Query 006500
Match_columns 643
No_of_seqs 606 out of 3674
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 00:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0338 ATP-dependent RNA heli 100.0 6E-102 1E-106 778.5 39.6 460 110-569 163-628 (691)
2 KOG0330 ATP-dependent RNA heli 100.0 2E-75 4.2E-80 571.1 32.1 374 124-503 60-433 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 2.9E-69 6.2E-74 563.5 35.8 363 125-488 91-459 (519)
4 COG0513 SrmB Superfamily II DN 100.0 3.9E-67 8.4E-72 571.9 42.2 366 125-494 29-398 (513)
5 KOG0340 ATP-dependent RNA heli 100.0 2.6E-67 5.6E-72 508.3 33.5 378 123-506 5-390 (442)
6 KOG0342 ATP-dependent RNA heli 100.0 3E-66 6.4E-71 521.5 36.6 385 122-512 79-469 (543)
7 KOG0345 ATP-dependent RNA heli 100.0 1.1E-65 2.4E-70 513.6 38.6 361 125-488 4-375 (567)
8 KOG0347 RNA helicase [RNA proc 100.0 1.2E-66 2.6E-71 528.3 31.0 371 120-494 176-587 (731)
9 KOG0343 RNA Helicase [RNA proc 100.0 9.3E-66 2E-70 521.7 35.2 385 124-513 68-458 (758)
10 KOG0328 Predicted ATP-dependen 100.0 2E-65 4.4E-70 480.3 28.8 370 123-498 25-394 (400)
11 KOG0333 U5 snRNP-like RNA heli 100.0 9E-65 2E-69 512.4 33.0 365 121-489 241-636 (673)
12 PRK04837 ATP-dependent RNA hel 100.0 3.2E-62 7E-67 527.4 42.3 367 124-494 7-379 (423)
13 KOG0346 RNA helicase [RNA proc 100.0 4.5E-62 9.8E-67 483.3 35.5 353 125-480 19-413 (569)
14 PRK11634 ATP-dependent RNA hel 100.0 1.4E-60 2.9E-65 529.6 50.9 371 124-501 5-376 (629)
15 PRK10590 ATP-dependent RNA hel 100.0 4.3E-61 9.4E-66 522.0 42.5 365 126-494 2-369 (456)
16 PTZ00110 helicase; Provisional 100.0 5.4E-61 1.2E-65 528.6 43.7 365 120-488 125-495 (545)
17 KOG0326 ATP-dependent RNA heli 100.0 1.8E-63 3.8E-68 474.6 20.6 368 120-495 80-447 (459)
18 KOG0348 ATP-dependent RNA heli 100.0 1.5E-61 3.2E-66 489.8 34.7 373 117-489 128-566 (708)
19 PRK04537 ATP-dependent RNA hel 100.0 9.2E-61 2E-65 528.4 43.0 368 125-495 9-382 (572)
20 PRK11776 ATP-dependent RNA hel 100.0 1.1E-60 2.5E-65 520.9 43.0 364 124-495 3-367 (460)
21 PRK11192 ATP-dependent RNA hel 100.0 1.3E-59 2.8E-64 509.5 43.9 366 126-494 2-369 (434)
22 PLN00206 DEAD-box ATP-dependen 100.0 2.1E-59 4.5E-64 514.8 42.2 364 121-489 117-487 (518)
23 KOG0336 ATP-dependent RNA heli 100.0 3.7E-60 7.9E-65 465.0 28.6 362 121-487 215-582 (629)
24 KOG0335 ATP-dependent RNA heli 100.0 1.2E-59 2.7E-64 482.6 28.7 363 121-487 70-454 (482)
25 PRK01297 ATP-dependent RNA hel 100.0 1.2E-57 2.7E-62 498.3 44.6 370 124-497 86-462 (475)
26 KOG0341 DEAD-box protein abstr 100.0 1.6E-60 3.4E-65 464.7 16.6 358 116-478 161-529 (610)
27 KOG0339 ATP-dependent RNA heli 100.0 3.3E-58 7.1E-63 462.2 31.1 365 121-488 219-586 (731)
28 KOG0350 DEAD-box ATP-dependent 100.0 1.1E-56 2.5E-61 451.6 33.3 363 124-491 126-554 (620)
29 PTZ00424 helicase 45; Provisio 100.0 1.3E-55 2.8E-60 474.6 42.5 366 124-495 27-392 (401)
30 KOG0332 ATP-dependent RNA heli 100.0 2.2E-56 4.8E-61 434.8 28.5 372 117-496 82-463 (477)
31 KOG0337 ATP-dependent RNA heli 100.0 2.5E-56 5.4E-61 440.6 26.3 366 124-495 20-386 (529)
32 KOG0327 Translation initiation 100.0 6.3E-55 1.4E-59 429.1 24.9 364 124-496 25-389 (397)
33 KOG0334 RNA helicase [RNA proc 100.0 1.8E-54 3.9E-59 473.3 31.1 376 120-499 360-740 (997)
34 KOG4284 DEAD box protein [Tran 100.0 2.9E-52 6.3E-57 429.6 25.7 354 121-479 21-381 (980)
35 TIGR03817 DECH_helic helicase/ 100.0 8.7E-51 1.9E-55 459.9 40.2 359 131-501 20-412 (742)
36 PLN03137 ATP-dependent DNA hel 100.0 1.2E-49 2.5E-54 446.5 39.9 345 125-487 435-797 (1195)
37 KOG0344 ATP-dependent RNA heli 100.0 1.4E-50 3.1E-55 417.7 26.5 366 122-489 129-507 (593)
38 TIGR00614 recQ_fam ATP-depende 100.0 5.4E-49 1.2E-53 428.5 35.3 326 141-487 5-343 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 3.9E-47 8.4E-52 424.4 37.0 333 132-487 9-353 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 3.8E-46 8.3E-51 417.8 36.4 324 142-488 8-342 (591)
41 KOG0329 ATP-dependent RNA heli 100.0 4.6E-47 1E-51 351.7 16.2 329 121-491 38-370 (387)
42 PRK13767 ATP-dependent helicas 100.0 5.2E-44 1.1E-48 412.6 38.4 339 132-475 18-396 (876)
43 PRK02362 ski2-like helicase; P 100.0 5.9E-44 1.3E-48 408.7 34.8 334 126-478 2-398 (737)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 6.5E-43 1.4E-47 387.6 34.8 316 143-476 12-390 (844)
45 PRK00254 ski2-like helicase; P 100.0 6.8E-43 1.5E-47 399.0 35.7 335 126-478 2-389 (720)
46 COG0514 RecQ Superfamily II DN 100.0 4.3E-43 9.3E-48 373.9 29.9 326 142-488 12-348 (590)
47 TIGR00580 mfd transcription-re 100.0 6.1E-42 1.3E-46 391.0 37.7 333 131-488 435-787 (926)
48 PRK10689 transcription-repair 100.0 2.5E-41 5.5E-46 393.9 37.8 329 135-488 589-936 (1147)
49 PRK09401 reverse gyrase; Revie 100.0 6.1E-41 1.3E-45 391.5 37.5 284 143-449 77-410 (1176)
50 COG1201 Lhr Lhr-like helicases 100.0 5.2E-41 1.1E-45 370.4 34.0 338 131-476 7-361 (814)
51 PRK10917 ATP-dependent DNA hel 100.0 2.8E-40 6.1E-45 373.0 37.6 315 137-475 252-587 (681)
52 PRK01172 ski2-like helicase; P 100.0 2.6E-40 5.7E-45 376.2 35.0 339 126-484 2-386 (674)
53 PHA02653 RNA helicase NPH-II; 100.0 2.3E-40 5E-45 366.0 32.7 319 150-485 167-522 (675)
54 PRK09751 putative ATP-dependen 100.0 4.6E-40 1E-44 384.6 36.5 303 167-472 1-380 (1490)
55 TIGR00643 recG ATP-dependent D 100.0 7.9E-40 1.7E-44 367.2 36.1 317 135-475 224-564 (630)
56 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.4E-39 5.3E-44 366.1 33.4 309 150-480 5-339 (819)
57 KOG0349 Putative DEAD-box RNA 100.0 2.1E-40 4.5E-45 327.9 17.9 293 195-488 285-626 (725)
58 TIGR01054 rgy reverse gyrase. 100.0 1.4E-38 3.1E-43 372.2 36.2 292 135-449 66-409 (1171)
59 COG1111 MPH1 ERCC4-like helica 100.0 6.8E-39 1.5E-43 326.4 28.9 327 145-481 13-485 (542)
60 PRK11664 ATP-dependent RNA hel 100.0 5.7E-39 1.2E-43 364.1 30.6 307 151-479 9-341 (812)
61 PRK14701 reverse gyrase; Provi 100.0 7.3E-39 1.6E-43 381.2 31.6 331 135-487 67-466 (1638)
62 KOG0352 ATP-dependent DNA heli 100.0 6.7E-39 1.5E-43 317.1 23.5 334 135-488 6-373 (641)
63 PRK12898 secA preprotein trans 100.0 5.5E-37 1.2E-41 333.6 37.2 321 143-481 100-590 (656)
64 PRK09200 preprotein translocas 100.0 3.4E-36 7.4E-41 334.2 38.3 322 143-481 75-545 (790)
65 PHA02558 uvsW UvsW helicase; P 100.0 8.8E-37 1.9E-41 334.3 30.5 303 145-468 112-443 (501)
66 TIGR03714 secA2 accessory Sec 100.0 2.7E-35 6E-40 323.8 40.3 317 149-481 70-541 (762)
67 COG1202 Superfamily II helicas 100.0 1.5E-36 3.3E-41 310.6 26.2 338 125-477 194-553 (830)
68 TIGR00963 secA preprotein tran 100.0 4.6E-35 9.9E-40 320.0 38.9 321 143-481 53-521 (745)
69 KOG0351 ATP-dependent DNA heli 100.0 1E-36 2.2E-41 343.1 26.7 334 135-488 252-603 (941)
70 TIGR01587 cas3_core CRISPR-ass 100.0 3.8E-36 8.3E-41 318.2 27.6 301 164-477 1-336 (358)
71 PRK13766 Hef nuclease; Provisi 100.0 8.2E-35 1.8E-39 337.3 37.8 325 146-479 14-481 (773)
72 KOG0354 DEAD-box like helicase 100.0 1.4E-35 3.1E-40 319.5 28.3 331 145-484 60-536 (746)
73 TIGR00603 rad25 DNA repair hel 100.0 4.6E-36 9.9E-41 330.1 21.0 316 147-487 255-617 (732)
74 PRK11131 ATP-dependent RNA hel 100.0 2.7E-34 5.9E-39 330.6 29.1 304 150-479 77-413 (1294)
75 TIGR03158 cas3_cyano CRISPR-as 100.0 9.4E-34 2E-38 297.2 30.7 293 151-462 1-357 (357)
76 COG0556 UvrB Helicase subunit 100.0 2E-34 4.4E-39 293.9 21.2 208 301-517 385-597 (663)
77 COG1205 Distinct helicase fami 100.0 3.3E-33 7.2E-38 317.5 32.9 339 132-476 55-421 (851)
78 KOG0353 ATP-dependent DNA heli 100.0 3.2E-33 7E-38 272.8 27.1 341 129-486 75-476 (695)
79 COG1204 Superfamily II helicas 100.0 2.4E-33 5.2E-38 314.3 28.5 334 130-474 14-405 (766)
80 PRK04914 ATP-dependent helicas 100.0 2.4E-32 5.1E-37 310.9 36.6 336 147-491 152-617 (956)
81 TIGR01967 DEAH_box_HrpA ATP-de 100.0 7.3E-32 1.6E-36 311.8 29.3 313 144-479 61-406 (1283)
82 PRK05580 primosome assembly pr 100.0 1.1E-29 2.5E-34 285.7 34.1 320 147-486 144-558 (679)
83 KOG0926 DEAH-box RNA helicase 100.0 1.2E-30 2.7E-35 275.6 24.2 331 132-476 244-703 (1172)
84 KOG0952 DNA/RNA helicase MER3/ 100.0 2.7E-30 5.8E-35 281.2 27.2 339 141-486 104-500 (1230)
85 KOG0385 Chromatin remodeling c 100.0 2.4E-30 5.3E-35 273.1 25.5 314 147-478 167-600 (971)
86 PRK13104 secA preprotein trans 100.0 1.1E-28 2.5E-33 273.4 38.0 321 143-481 79-591 (896)
87 PLN03142 Probable chromatin-re 100.0 3.5E-29 7.7E-34 285.9 33.4 328 147-487 169-611 (1033)
88 cd00268 DEADc DEAD-box helicas 100.0 2E-29 4.2E-34 245.1 25.1 202 127-330 1-202 (203)
89 COG1061 SSL2 DNA or RNA helica 100.0 1.9E-29 4.1E-34 271.0 25.7 299 146-469 35-382 (442)
90 PRK12904 preprotein translocas 100.0 1.4E-27 3E-32 264.8 40.3 320 143-481 78-577 (830)
91 KOG0947 Cytoplasmic exosomal R 100.0 5E-28 1.1E-32 260.5 35.0 328 138-485 289-733 (1248)
92 PRK12899 secA preprotein trans 100.0 1.1E-27 2.4E-32 264.8 37.4 147 129-284 66-228 (970)
93 PRK12906 secA preprotein trans 100.0 3.4E-27 7.3E-32 260.7 37.8 321 143-481 77-557 (796)
94 PRK09694 helicase Cas3; Provis 100.0 1.2E-27 2.5E-32 271.2 32.8 314 145-466 284-664 (878)
95 KOG0387 Transcription-coupled 100.0 1.2E-27 2.6E-32 254.2 29.7 328 130-478 196-659 (923)
96 TIGR00595 priA primosomal prot 100.0 6.8E-28 1.5E-32 262.0 26.4 299 166-485 1-389 (505)
97 COG1200 RecG RecG-like helicas 100.0 1.2E-26 2.7E-31 247.0 33.5 324 130-478 245-592 (677)
98 COG1643 HrpA HrpA-like helicas 100.0 2.1E-27 4.6E-32 264.9 26.8 310 149-478 52-388 (845)
99 KOG1123 RNA polymerase II tran 100.0 3.6E-29 7.7E-34 252.6 8.5 403 146-590 301-749 (776)
100 KOG0922 DEAH-box RNA helicase 100.0 9.7E-27 2.1E-31 245.2 24.3 309 149-479 53-392 (674)
101 TIGR00631 uvrb excinuclease AB 100.0 1.7E-26 3.7E-31 256.8 26.8 147 368-515 440-591 (655)
102 PRK13107 preprotein translocas 100.0 1.1E-25 2.4E-30 248.9 32.6 321 143-481 79-595 (908)
103 KOG0384 Chromodomain-helicase 100.0 6.5E-28 1.4E-32 266.4 15.0 329 146-488 369-824 (1373)
104 COG1197 Mfd Transcription-repa 100.0 1.5E-25 3.3E-30 251.3 34.1 331 131-487 578-929 (1139)
105 COG4098 comFA Superfamily II D 99.9 9.6E-26 2.1E-30 219.0 27.7 313 147-486 97-425 (441)
106 COG4581 Superfamily II RNA hel 99.9 1.2E-25 2.6E-30 252.1 31.9 320 140-476 113-536 (1041)
107 PRK11448 hsdR type I restricti 99.9 1.3E-25 2.9E-30 261.6 29.4 305 147-465 413-801 (1123)
108 KOG0951 RNA helicase BRR2, DEA 99.9 9.5E-26 2E-30 248.6 25.9 338 143-485 305-710 (1674)
109 KOG0948 Nuclear exosomal RNA h 99.9 2E-26 4.4E-31 242.6 16.2 320 147-486 129-549 (1041)
110 KOG0923 mRNA splicing factor A 99.9 1.1E-25 2.4E-30 234.4 21.4 310 146-477 264-606 (902)
111 PRK05298 excinuclease ABC subu 99.9 2.3E-24 5E-29 241.8 33.3 180 369-551 445-636 (652)
112 PF00270 DEAD: DEAD/DEAH box h 99.9 6.7E-25 1.5E-29 206.5 19.0 165 149-318 1-168 (169)
113 KOG2340 Uncharacterized conser 99.9 1.1E-24 2.5E-29 221.9 21.2 344 144-487 213-678 (698)
114 PF06862 DUF1253: Protein of u 99.9 3.3E-24 7.1E-29 223.4 24.3 298 190-487 31-425 (442)
115 KOG0924 mRNA splicing factor A 99.9 1.4E-24 3.1E-29 226.5 19.5 309 147-477 356-697 (1042)
116 COG1110 Reverse gyrase [DNA re 99.9 3.6E-23 7.8E-28 226.1 30.3 280 143-448 79-416 (1187)
117 KOG0950 DNA polymerase theta/e 99.9 5.9E-24 1.3E-28 231.3 21.2 341 132-487 208-621 (1008)
118 KOG0920 ATP-dependent RNA heli 99.9 9.1E-23 2E-27 226.8 26.0 317 147-478 173-545 (924)
119 KOG0389 SNF2 family DNA-depend 99.9 6.6E-23 1.4E-27 218.1 22.8 322 148-479 400-890 (941)
120 KOG0392 SNF2 family DNA-depend 99.9 6.5E-23 1.4E-27 226.1 21.1 323 147-478 975-1455(1549)
121 PRK12900 secA preprotein trans 99.9 2.4E-21 5.2E-26 215.4 32.6 124 356-481 582-715 (1025)
122 KOG0386 Chromatin remodeling c 99.9 2.5E-23 5.4E-28 226.2 15.3 330 143-488 390-847 (1157)
123 KOG0391 SNF2 family DNA-depend 99.9 1.9E-21 4.1E-26 212.4 27.9 112 367-478 1273-1388(1958)
124 KOG0390 DNA repair protein, SN 99.9 2.7E-21 5.9E-26 211.7 26.9 320 147-477 238-707 (776)
125 COG1203 CRISPR-associated heli 99.9 3.3E-21 7.1E-26 219.5 24.3 325 148-479 196-552 (733)
126 TIGR01407 dinG_rel DnaQ family 99.9 5.8E-20 1.3E-24 213.5 32.6 330 132-476 231-813 (850)
127 KOG0925 mRNA splicing factor A 99.9 2.5E-20 5.4E-25 188.5 22.4 330 124-477 24-387 (699)
128 PRK12326 preprotein translocas 99.9 1.7E-18 3.6E-23 188.0 36.3 320 143-481 75-551 (764)
129 KOG0388 SNF2 family DNA-depend 99.8 3.3E-20 7.2E-25 194.5 19.0 112 367-478 1041-1155(1185)
130 TIGR00348 hsdR type I site-spe 99.8 3.9E-19 8.6E-24 200.4 28.2 301 148-464 239-634 (667)
131 COG1198 PriA Primosomal protei 99.8 8.9E-19 1.9E-23 193.4 29.7 322 147-487 198-613 (730)
132 smart00487 DEXDc DEAD-like hel 99.8 8.1E-19 1.8E-23 168.9 22.1 186 143-333 4-191 (201)
133 PRK13103 secA preprotein trans 99.8 7.4E-18 1.6E-22 187.3 32.2 320 143-481 79-595 (913)
134 PRK12903 secA preprotein trans 99.8 7.9E-17 1.7E-21 177.3 37.5 319 143-481 75-543 (925)
135 KOG1000 Chromatin remodeling p 99.8 7.4E-18 1.6E-22 171.1 23.6 326 145-487 196-615 (689)
136 COG4096 HsdR Type I site-speci 99.8 3.5E-18 7.6E-23 184.9 22.6 298 146-464 164-525 (875)
137 PRK07246 bifunctional ATP-depe 99.8 4.3E-17 9.4E-22 187.0 29.8 288 141-449 240-725 (820)
138 KOG0949 Predicted helicase, DE 99.8 1.4E-17 2.9E-22 181.0 21.3 160 147-314 511-673 (1330)
139 CHL00122 secA preprotein trans 99.8 1.1E-15 2.4E-20 169.4 35.1 131 143-284 73-209 (870)
140 PF00271 Helicase_C: Helicase 99.7 7.4E-18 1.6E-22 136.6 8.3 78 388-465 1-78 (78)
141 cd00079 HELICc Helicase superf 99.7 2E-17 4.3E-22 148.3 12.0 117 357-473 13-131 (131)
142 PRK12902 secA preprotein trans 99.7 1.9E-14 4.2E-19 159.3 36.3 131 143-284 82-218 (939)
143 KOG1002 Nucleotide excision re 99.7 3.4E-15 7.3E-20 151.8 26.0 112 367-478 635-750 (791)
144 PRK08074 bifunctional ATP-depe 99.7 5.4E-15 1.2E-19 172.9 29.6 81 369-449 751-835 (928)
145 KOG4150 Predicted ATP-dependen 99.7 5.9E-16 1.3E-20 159.5 17.7 346 138-491 277-656 (1034)
146 KOG0953 Mitochondrial RNA heli 99.7 2.2E-16 4.7E-21 163.0 14.3 277 165-487 194-486 (700)
147 TIGR03117 cas_csf4 CRISPR-asso 99.7 2.8E-14 6.1E-19 156.9 31.3 78 369-449 469-561 (636)
148 cd00046 DEXDc DEAD-like helica 99.7 1.2E-15 2.5E-20 138.1 16.9 144 163-312 1-144 (144)
149 COG4889 Predicted helicase [Ge 99.7 1.4E-16 3.1E-21 171.0 9.2 307 143-463 157-571 (1518)
150 KOG1015 Transcription regulato 99.6 9.9E-15 2.2E-19 157.9 20.5 107 368-474 1140-1272(1567)
151 COG0553 HepA Superfamily II DN 99.6 1.9E-14 4E-19 170.7 25.3 107 372-478 713-823 (866)
152 KOG4439 RNA polymerase II tran 99.6 6.3E-15 1.4E-19 155.8 18.5 107 367-473 743-852 (901)
153 PF04851 ResIII: Type III rest 99.6 3.5E-15 7.6E-20 142.1 12.5 153 147-313 3-183 (184)
154 PRK12901 secA preprotein trans 99.6 1.8E-12 3.9E-17 145.2 31.8 111 368-481 626-745 (1112)
155 COG1199 DinG Rad3-related DNA 99.6 4.6E-13 1E-17 153.0 27.1 109 361-473 471-614 (654)
156 smart00490 HELICc helicase sup 99.6 6.8E-15 1.5E-19 120.1 8.3 81 385-465 2-82 (82)
157 KOG0951 RNA helicase BRR2, DEA 99.6 2.4E-13 5.1E-18 151.8 20.9 315 147-486 1143-1503(1674)
158 TIGR00604 rad3 DNA repair heli 99.5 2.2E-12 4.8E-17 147.6 26.0 75 143-220 6-84 (705)
159 PRK11747 dinG ATP-dependent DN 99.5 1.5E-11 3.2E-16 139.8 32.2 77 369-449 533-616 (697)
160 PRK14873 primosome assembly pr 99.4 1.6E-11 3.4E-16 137.2 24.2 136 169-320 167-311 (665)
161 PF02399 Herpes_ori_bp: Origin 99.4 3.7E-11 8.1E-16 132.3 22.5 288 165-477 52-388 (824)
162 TIGR02562 cas3_yersinia CRISPR 99.4 3.5E-11 7.7E-16 135.7 22.1 311 148-466 409-881 (1110)
163 PF00176 SNF2_N: SNF2 family N 99.4 3.3E-12 7.3E-17 131.7 11.8 156 151-314 1-174 (299)
164 KOG1016 Predicted DNA helicase 99.3 4.1E-10 8.8E-15 120.5 20.4 118 370-487 719-857 (1387)
165 COG0653 SecA Preprotein transl 99.2 8.6E-10 1.9E-14 122.5 20.8 314 148-479 81-547 (822)
166 KOG0921 Dosage compensation co 99.2 7.1E-11 1.5E-15 128.3 10.9 317 153-480 384-777 (1282)
167 PF07652 Flavi_DEAD: Flaviviru 99.2 1.1E-10 2.5E-15 102.6 10.2 135 162-316 4-140 (148)
168 smart00488 DEXDc2 DEAD-like he 99.1 9E-10 1.9E-14 112.1 14.3 76 143-219 5-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.1 9E-10 1.9E-14 112.1 14.3 76 143-219 5-84 (289)
170 COG0610 Type I site-specific r 99.1 3.6E-08 7.9E-13 115.3 29.4 299 163-475 274-651 (962)
171 PF07517 SecA_DEAD: SecA DEAD- 98.8 6.9E-08 1.5E-12 95.8 15.4 131 143-284 74-210 (266)
172 KOG1001 Helicase-like transcri 98.8 4.7E-08 1E-12 108.9 11.8 101 372-472 541-643 (674)
173 TIGR00596 rad1 DNA repair prot 98.5 3.4E-06 7.4E-11 96.3 16.4 69 244-313 5-73 (814)
174 KOG0952 DNA/RNA helicase MER3/ 98.4 1.8E-07 3.8E-12 104.6 4.7 225 148-384 928-1167(1230)
175 COG3587 Restriction endonuclea 98.4 1.7E-05 3.7E-10 87.5 19.8 70 420-489 483-565 (985)
176 KOG1132 Helicase of the DEAD s 98.4 7.1E-05 1.5E-09 83.2 24.4 82 367-449 558-656 (945)
177 KOG0383 Predicted helicase [Ge 98.4 2.4E-08 5.2E-13 109.8 -2.6 65 368-433 629-696 (696)
178 PRK15483 type III restriction- 98.4 3.6E-06 7.8E-11 96.3 14.4 70 420-489 501-580 (986)
179 PF13086 AAA_11: AAA domain; P 98.3 1.2E-06 2.7E-11 86.5 7.9 71 147-218 1-75 (236)
180 PF13307 Helicase_C_2: Helicas 98.3 2.1E-06 4.6E-11 80.2 8.2 110 364-476 4-149 (167)
181 PF13872 AAA_34: P-loop contai 98.2 2.5E-05 5.3E-10 77.9 13.2 172 130-318 26-226 (303)
182 KOG1802 RNA helicase nonsense 98.2 4.2E-05 9.1E-10 82.0 15.0 85 139-232 402-486 (935)
183 PF13604 AAA_30: AAA domain; P 98.1 1.4E-05 3.1E-10 76.7 10.1 123 147-310 1-129 (196)
184 KOG1131 RNA polymerase II tran 98.0 0.0028 6E-08 66.7 23.6 106 370-477 530-680 (755)
185 KOG1803 DNA helicase [Replicat 97.9 2E-05 4.4E-10 84.1 7.6 64 147-216 185-249 (649)
186 TIGR01447 recD exodeoxyribonuc 97.9 0.00011 2.3E-09 82.1 13.4 143 149-310 147-294 (586)
187 PF02562 PhoH: PhoH-like prote 97.9 4.1E-05 9E-10 73.1 8.4 145 146-310 3-154 (205)
188 PF13245 AAA_19: Part of AAA d 97.9 3.9E-05 8.4E-10 61.1 6.9 60 155-216 2-62 (76)
189 PRK10536 hypothetical protein; 97.8 0.00028 6E-09 69.4 13.2 144 143-309 55-210 (262)
190 PF12340 DUF3638: Protein of u 97.8 0.00012 2.5E-09 70.6 10.2 152 126-285 4-186 (229)
191 PF09848 DUF2075: Uncharacteri 97.8 5.3E-05 1.2E-09 79.9 8.6 107 165-298 4-117 (352)
192 PRK10875 recD exonuclease V su 97.8 0.00017 3.7E-09 80.6 12.3 143 149-311 154-301 (615)
193 TIGR00376 DNA helicase, putati 97.8 0.00026 5.6E-09 80.0 13.4 67 146-218 156-223 (637)
194 TIGR01448 recD_rel helicase, p 97.8 0.00033 7.2E-09 80.4 14.1 130 142-311 319-452 (720)
195 PF13401 AAA_22: AAA domain; P 97.4 0.00042 9.1E-09 61.6 7.0 37 273-312 89-125 (131)
196 COG3421 Uncharacterized protei 97.4 0.0015 3.3E-08 69.8 11.5 142 167-314 2-167 (812)
197 PF00580 UvrD-helicase: UvrD/R 97.3 0.00044 9.5E-09 71.6 7.2 124 148-281 1-125 (315)
198 PRK08181 transposase; Validate 97.3 0.0051 1.1E-07 61.8 13.8 112 158-317 102-214 (269)
199 PRK12723 flagellar biosynthesi 97.3 0.0032 6.9E-08 66.5 12.7 130 163-322 175-308 (388)
200 smart00492 HELICc3 helicase su 97.3 0.0016 3.5E-08 58.6 9.2 52 398-449 25-79 (141)
201 PF13871 Helicase_C_4: Helicas 97.2 0.0012 2.6E-08 65.9 8.5 79 411-489 52-142 (278)
202 PRK06526 transposase; Provisio 97.1 0.0073 1.6E-07 60.3 12.9 46 271-316 159-205 (254)
203 TIGR02768 TraA_Ti Ti-type conj 97.1 0.007 1.5E-07 69.9 14.4 75 132-213 338-413 (744)
204 PRK04296 thymidine kinase; Pro 97.1 0.0017 3.8E-08 61.9 8.0 109 164-312 4-115 (190)
205 smart00491 HELICc2 helicase su 97.1 0.0025 5.4E-08 57.5 8.1 67 383-449 4-80 (142)
206 PRK14974 cell division protein 97.0 0.0099 2.1E-07 61.6 13.3 53 271-323 222-275 (336)
207 PRK13889 conjugal transfer rel 97.0 0.011 2.3E-07 69.6 14.9 63 143-212 343-406 (988)
208 KOG1805 DNA replication helica 97.0 0.0056 1.2E-07 69.2 11.4 135 131-284 657-809 (1100)
209 KOG0298 DEAD box-containing he 97.0 0.0019 4.1E-08 74.8 7.8 154 162-320 374-558 (1394)
210 cd00009 AAA The AAA+ (ATPases 96.9 0.014 3.1E-07 52.2 12.0 25 162-187 19-43 (151)
211 PRK14722 flhF flagellar biosyn 96.9 0.005 1.1E-07 64.5 9.9 131 162-323 137-269 (374)
212 COG1419 FlhF Flagellar GTP-bin 96.8 0.017 3.7E-07 60.3 12.9 133 162-325 203-337 (407)
213 PRK13826 Dtr system oriT relax 96.7 0.028 6.1E-07 66.6 15.4 75 131-212 366-441 (1102)
214 PRK11889 flhF flagellar biosyn 96.7 0.018 3.8E-07 60.3 12.2 128 163-323 242-374 (436)
215 PF00448 SRP54: SRP54-type pro 96.7 0.0092 2E-07 57.1 9.2 127 165-321 4-134 (196)
216 smart00382 AAA ATPases associa 96.7 0.0042 9.1E-08 55.2 6.6 41 162-208 2-42 (148)
217 PF14617 CMS1: U3-containing 9 96.7 0.0053 1.1E-07 60.5 7.6 89 192-282 122-212 (252)
218 PRK06921 hypothetical protein; 96.7 0.018 4E-07 57.9 11.7 45 161-211 116-160 (266)
219 PRK05703 flhF flagellar biosyn 96.7 0.027 5.8E-07 60.7 13.6 128 162-323 221-354 (424)
220 COG1875 NYN ribonuclease and A 96.6 0.011 2.3E-07 60.3 9.4 65 141-208 222-288 (436)
221 PRK08116 hypothetical protein; 96.5 0.051 1.1E-06 54.8 13.4 109 163-317 115-226 (268)
222 PRK07952 DNA replication prote 96.4 0.049 1.1E-06 53.9 12.6 109 163-317 100-210 (244)
223 COG2805 PilT Tfp pilus assembl 96.4 0.0082 1.8E-07 59.6 6.6 52 122-192 103-154 (353)
224 PF05970 PIF1: PIF1-like helic 96.4 0.019 4E-07 60.9 9.9 59 148-212 2-66 (364)
225 PRK12377 putative replication 96.3 0.035 7.6E-07 55.1 10.8 45 162-213 101-145 (248)
226 PHA02533 17 large terminase pr 96.3 0.04 8.8E-07 60.9 12.4 148 147-312 59-210 (534)
227 KOG1133 Helicase of the DEAD s 96.3 0.052 1.1E-06 59.6 12.6 111 362-476 622-779 (821)
228 PRK08727 hypothetical protein; 96.2 0.026 5.6E-07 55.7 9.5 43 271-313 93-136 (233)
229 PRK06835 DNA replication prote 96.2 0.14 3E-06 53.1 15.0 44 162-212 183-226 (329)
230 COG1484 DnaC DNA replication p 96.1 0.03 6.6E-07 55.9 9.4 50 161-217 104-153 (254)
231 KOG0989 Replication factor C, 96.1 0.02 4.4E-07 57.0 7.8 46 267-313 125-170 (346)
232 cd01120 RecA-like_NTPases RecA 96.1 0.085 1.9E-06 48.3 11.9 44 270-313 84-137 (165)
233 PRK10919 ATP-dependent DNA hel 96.0 0.013 2.7E-07 67.3 7.1 71 147-221 2-72 (672)
234 PRK11054 helD DNA helicase IV; 96.0 0.025 5.4E-07 64.5 9.3 71 145-219 194-264 (684)
235 COG1444 Predicted P-loop ATPas 96.0 0.054 1.2E-06 61.2 11.5 142 148-314 212-358 (758)
236 PRK05642 DNA replication initi 96.0 0.04 8.7E-07 54.5 9.4 44 271-314 97-141 (234)
237 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.038 8.1E-07 54.2 9.2 41 273-313 92-133 (226)
238 PF05127 Helicase_RecD: Helica 95.9 0.0039 8.4E-08 58.1 1.8 125 166-314 1-125 (177)
239 PRK09112 DNA polymerase III su 95.8 0.07 1.5E-06 56.0 10.9 40 269-309 139-178 (351)
240 PTZ00293 thymidine kinase; Pro 95.7 0.053 1.1E-06 52.0 8.8 39 162-206 4-42 (211)
241 COG4962 CpaF Flp pilus assembl 95.6 0.026 5.6E-07 57.5 6.6 62 141-209 151-213 (355)
242 PRK06893 DNA replication initi 95.6 0.047 1E-06 53.8 8.4 45 271-315 91-137 (229)
243 PRK00149 dnaA chromosomal repl 95.6 0.053 1.2E-06 59.2 9.7 45 163-212 149-193 (450)
244 PRK00771 signal recognition pa 95.6 0.13 2.9E-06 55.3 12.1 50 273-322 177-227 (437)
245 TIGR01074 rep ATP-dependent DN 95.5 0.031 6.7E-07 64.4 7.5 70 148-221 2-71 (664)
246 PRK07003 DNA polymerase III su 95.5 0.072 1.6E-06 60.2 9.9 39 270-309 118-156 (830)
247 TIGR01075 uvrD DNA helicase II 95.5 0.027 5.9E-07 65.3 7.1 72 146-221 3-74 (715)
248 TIGR00362 DnaA chromosomal rep 95.5 0.065 1.4E-06 57.8 9.4 43 163-210 137-179 (405)
249 PF03354 Terminase_1: Phage Te 95.5 0.053 1.1E-06 59.7 8.9 149 150-309 1-160 (477)
250 PRK08084 DNA replication initi 95.4 0.076 1.6E-06 52.5 9.0 43 272-314 98-142 (235)
251 PF13177 DNA_pol3_delta2: DNA 95.4 0.3 6.4E-06 45.2 12.3 43 270-313 101-143 (162)
252 COG3973 Superfamily I DNA and 95.4 0.068 1.5E-06 58.0 8.8 89 131-220 188-284 (747)
253 PRK07764 DNA polymerase III su 95.3 0.21 4.6E-06 58.1 13.5 39 270-309 119-157 (824)
254 PRK12727 flagellar biosynthesi 95.2 0.38 8.3E-06 52.6 14.2 18 162-179 350-367 (559)
255 PRK11773 uvrD DNA-dependent he 95.2 0.043 9.3E-07 63.7 7.6 72 146-221 8-79 (721)
256 PRK13894 conjugal transfer ATP 95.2 0.11 2.5E-06 53.6 9.9 66 137-208 124-190 (319)
257 PRK14087 dnaA chromosomal repl 95.2 0.12 2.6E-06 56.3 10.4 108 163-314 142-250 (450)
258 PRK12323 DNA polymerase III su 95.2 0.12 2.5E-06 57.8 10.2 40 269-309 122-161 (700)
259 PRK08769 DNA polymerase III su 95.1 0.17 3.6E-06 52.3 10.6 144 145-311 2-152 (319)
260 PRK12422 chromosomal replicati 95.1 0.11 2.4E-06 56.3 9.7 47 271-317 202-250 (445)
261 PRK06731 flhF flagellar biosyn 95.1 0.3 6.5E-06 49.1 12.0 130 161-323 74-208 (270)
262 TIGR01425 SRP54_euk signal rec 95.0 0.25 5.5E-06 52.8 12.1 131 164-323 102-235 (429)
263 TIGR02760 TraI_TIGR conjugativ 95.0 0.2 4.4E-06 63.9 13.2 135 147-311 429-566 (1960)
264 PRK14961 DNA polymerase III su 95.0 0.23 5.1E-06 52.5 11.9 38 270-308 118-155 (363)
265 PHA03333 putative ATPase subun 95.0 0.35 7.5E-06 54.0 13.2 71 146-221 168-241 (752)
266 PRK07471 DNA polymerase III su 95.0 0.16 3.6E-06 53.5 10.5 134 164-312 43-181 (365)
267 PRK12726 flagellar biosynthesi 95.0 0.23 5.1E-06 51.9 11.3 17 162-178 206-222 (407)
268 TIGR00064 ftsY signal recognit 95.0 0.29 6.3E-06 49.4 11.9 130 163-322 73-212 (272)
269 TIGR02881 spore_V_K stage V sp 95.0 0.098 2.1E-06 52.6 8.5 16 163-178 43-58 (261)
270 cd01124 KaiC KaiC is a circadi 95.0 0.25 5.4E-06 46.6 10.9 48 165-219 2-49 (187)
271 PRK13833 conjugal transfer pro 94.9 0.085 1.8E-06 54.4 7.9 64 140-209 123-187 (323)
272 PRK14712 conjugal transfer nic 94.9 0.16 3.5E-06 62.5 11.2 64 147-212 835-900 (1623)
273 PRK14723 flhF flagellar biosyn 94.9 0.17 3.6E-06 57.9 10.6 17 163-179 186-202 (767)
274 PRK09111 DNA polymerase III su 94.9 0.18 3.9E-06 56.6 10.9 40 269-309 130-169 (598)
275 PRK14958 DNA polymerase III su 94.8 0.051 1.1E-06 59.9 6.5 39 270-309 118-156 (509)
276 PRK13709 conjugal transfer nic 94.8 0.19 4.2E-06 62.6 11.9 64 147-212 967-1032(1747)
277 TIGR02782 TrbB_P P-type conjug 94.8 0.26 5.7E-06 50.5 11.2 66 137-208 108-174 (299)
278 PRK14721 flhF flagellar biosyn 94.8 0.31 6.7E-06 52.1 11.9 131 162-323 191-323 (420)
279 PF00004 AAA: ATPase family as 94.7 0.043 9.4E-07 48.4 4.7 14 165-178 1-14 (132)
280 PRK11331 5-methylcytosine-spec 94.7 0.12 2.5E-06 55.4 8.5 32 148-179 180-211 (459)
281 COG1474 CDC6 Cdc6-related prot 94.7 0.22 4.8E-06 52.5 10.7 27 163-190 43-69 (366)
282 TIGR01547 phage_term_2 phage t 94.7 0.14 3.1E-06 54.9 9.4 143 164-322 3-150 (396)
283 PTZ00112 origin recognition co 94.7 0.17 3.7E-06 57.9 9.9 24 164-188 782-806 (1164)
284 PRK08939 primosomal protein Dn 94.7 0.4 8.6E-06 49.3 12.1 26 162-188 156-181 (306)
285 PRK08691 DNA polymerase III su 94.7 0.25 5.3E-06 55.8 11.2 40 269-309 117-156 (709)
286 PRK08903 DnaA regulatory inact 94.7 0.17 3.7E-06 49.7 9.1 42 272-314 91-133 (227)
287 PRK14964 DNA polymerase III su 94.6 0.27 5.9E-06 53.7 11.2 42 269-312 114-155 (491)
288 PHA02544 44 clamp loader, smal 94.6 0.19 4.2E-06 52.1 9.9 39 271-309 100-138 (316)
289 PRK14949 DNA polymerase III su 94.6 0.26 5.6E-06 57.0 11.3 38 270-308 118-155 (944)
290 PRK09183 transposase/IS protei 94.6 0.36 7.9E-06 48.4 11.3 20 159-178 99-118 (259)
291 PRK05707 DNA polymerase III su 94.6 0.073 1.6E-06 55.3 6.4 41 148-189 4-48 (328)
292 PRK14957 DNA polymerase III su 94.5 0.32 6.9E-06 53.9 11.7 40 269-309 117-156 (546)
293 COG3972 Superfamily I DNA and 94.5 0.12 2.5E-06 54.8 7.6 180 136-330 152-346 (660)
294 PRK06645 DNA polymerase III su 94.5 0.22 4.7E-06 54.8 10.3 17 163-179 44-60 (507)
295 PRK14088 dnaA chromosomal repl 94.5 0.26 5.7E-06 53.5 10.9 38 163-204 131-168 (440)
296 PRK14956 DNA polymerase III su 94.4 0.16 3.4E-06 55.0 8.8 15 164-178 42-56 (484)
297 PF05876 Terminase_GpA: Phage 94.4 0.11 2.5E-06 57.9 8.0 125 147-284 16-147 (557)
298 PRK12402 replication factor C 94.4 0.24 5.2E-06 51.8 10.2 40 270-311 124-163 (337)
299 PRK14952 DNA polymerase III su 94.4 0.53 1.1E-05 52.7 13.1 40 269-309 116-155 (584)
300 PRK14086 dnaA chromosomal repl 94.4 0.22 4.9E-06 55.4 10.0 46 271-316 377-424 (617)
301 PLN03025 replication factor C 94.4 0.5 1.1E-05 49.1 12.3 40 271-312 99-138 (319)
302 PRK12724 flagellar biosynthesi 94.3 0.54 1.2E-05 50.0 12.2 53 271-323 299-356 (432)
303 PRK07994 DNA polymerase III su 94.3 0.19 4.1E-06 56.7 9.3 38 270-308 118-155 (647)
304 PF00308 Bac_DnaA: Bacterial d 94.3 0.13 2.7E-06 50.3 7.1 107 164-316 36-144 (219)
305 COG0552 FtsY Signal recognitio 94.2 0.65 1.4E-05 47.3 12.1 129 165-323 142-280 (340)
306 PRK14960 DNA polymerase III su 94.2 0.12 2.5E-06 57.9 7.3 40 270-311 117-156 (702)
307 PRK05986 cob(I)alamin adenolsy 94.2 0.13 2.8E-06 48.5 6.6 146 161-322 21-168 (191)
308 TIGR03015 pepcterm_ATPase puta 94.1 0.25 5.4E-06 49.8 9.3 32 147-178 23-59 (269)
309 PRK14965 DNA polymerase III su 94.1 0.31 6.7E-06 54.8 10.7 40 269-309 117-156 (576)
310 PRK10917 ATP-dependent DNA hel 94.1 0.3 6.5E-06 56.3 10.9 76 369-444 309-389 (681)
311 CHL00181 cbbX CbbX; Provisiona 94.1 0.29 6.3E-06 49.9 9.6 18 162-179 59-76 (287)
312 KOG0338 ATP-dependent RNA heli 94.1 4.8 0.0001 43.2 18.3 71 369-443 251-332 (691)
313 PHA03368 DNA packaging termina 94.1 0.31 6.8E-06 54.2 10.2 135 162-314 254-392 (738)
314 PF05729 NACHT: NACHT domain 94.0 0.27 5.9E-06 45.1 8.6 45 165-210 3-47 (166)
315 PRK04195 replication factor C 94.0 0.36 7.8E-06 53.3 10.8 17 162-178 39-55 (482)
316 cd00561 CobA_CobO_BtuR ATP:cor 94.0 0.61 1.3E-05 42.8 10.5 53 269-321 93-147 (159)
317 PRK10867 signal recognition pa 94.0 0.66 1.4E-05 50.0 12.4 23 164-187 102-124 (433)
318 PRK00411 cdc6 cell division co 93.9 0.31 6.6E-06 52.3 10.0 25 163-188 56-80 (394)
319 COG0470 HolB ATPase involved i 93.9 0.16 3.5E-06 52.7 7.5 28 162-190 23-51 (325)
320 TIGR02785 addA_Gpos recombinat 93.9 0.15 3.2E-06 62.8 8.1 125 147-282 1-126 (1232)
321 TIGR01073 pcrA ATP-dependent D 93.8 0.16 3.5E-06 59.1 8.1 72 146-221 3-74 (726)
322 COG1110 Reverse gyrase [DNA re 93.8 0.25 5.5E-06 56.9 9.1 73 358-430 113-191 (1187)
323 PF05621 TniB: Bacterial TniB 93.8 0.36 7.8E-06 48.8 9.3 114 163-304 62-180 (302)
324 KOG1513 Nuclear helicase MOP-3 93.8 0.049 1.1E-06 60.4 3.4 158 145-312 262-454 (1300)
325 PRK14963 DNA polymerase III su 93.8 0.41 9E-06 52.8 10.7 24 164-188 38-61 (504)
326 TIGR02880 cbbX_cfxQ probable R 93.7 0.23 4.9E-06 50.7 8.0 18 162-179 58-75 (284)
327 PRK14969 DNA polymerase III su 93.7 0.59 1.3E-05 52.0 11.8 40 269-309 117-156 (527)
328 TIGR03499 FlhF flagellar biosy 93.7 0.14 3E-06 52.1 6.4 17 162-178 194-210 (282)
329 PRK14951 DNA polymerase III su 93.7 0.13 2.7E-06 57.9 6.5 42 269-312 122-163 (618)
330 PRK06995 flhF flagellar biosyn 93.6 0.36 7.8E-06 52.5 9.6 16 163-178 257-272 (484)
331 COG2804 PulE Type II secretory 93.5 0.12 2.5E-06 55.5 5.5 41 149-190 243-285 (500)
332 PRK05580 primosome assembly pr 93.4 0.31 6.7E-06 56.1 9.2 76 370-446 190-266 (679)
333 PF06745 KaiC: KaiC; InterPro 93.3 0.22 4.7E-06 48.9 6.9 131 162-312 19-160 (226)
334 cd01122 GP4d_helicase GP4d_hel 93.3 0.23 4.9E-06 50.3 7.2 41 159-204 27-67 (271)
335 TIGR00959 ffh signal recogniti 93.3 0.95 2.1E-05 48.7 12.0 51 272-322 183-234 (428)
336 PRK10436 hypothetical protein; 93.2 0.23 4.9E-06 54.0 7.4 39 149-188 203-243 (462)
337 PRK14955 DNA polymerase III su 93.2 0.48 1E-05 50.8 9.8 17 269-285 125-141 (397)
338 COG2256 MGS1 ATPase related to 93.2 0.25 5.4E-06 51.4 7.0 17 163-179 49-65 (436)
339 PRK05563 DNA polymerase III su 93.1 0.38 8.3E-06 53.9 9.2 31 269-300 117-147 (559)
340 COG1435 Tdk Thymidine kinase [ 93.1 0.55 1.2E-05 44.1 8.6 102 164-297 6-107 (201)
341 PRK07940 DNA polymerase III su 93.1 0.65 1.4E-05 49.5 10.5 46 269-316 115-160 (394)
342 PRK05896 DNA polymerase III su 93.1 0.18 3.9E-06 56.1 6.4 41 270-312 118-158 (605)
343 PRK14950 DNA polymerase III su 93.1 0.41 8.8E-06 54.1 9.4 41 269-311 118-158 (585)
344 TIGR00708 cobA cob(I)alamin ad 93.0 0.22 4.7E-06 46.3 5.9 54 269-322 95-150 (173)
345 TIGR02533 type_II_gspE general 93.0 0.29 6.3E-06 53.7 7.9 45 140-188 221-267 (486)
346 cd03115 SRP The signal recogni 92.9 2.1 4.6E-05 39.8 12.8 23 165-188 3-25 (173)
347 PRK14962 DNA polymerase III su 92.9 0.58 1.3E-05 51.1 10.0 15 164-178 38-52 (472)
348 PF13173 AAA_14: AAA domain 92.8 1 2.3E-05 39.6 9.9 37 272-312 62-98 (128)
349 TIGR00595 priA primosomal prot 92.8 0.39 8.6E-06 53.1 8.6 74 370-444 25-99 (505)
350 KOG2036 Predicted P-loop ATPas 92.8 1.1 2.3E-05 49.6 11.4 64 149-217 255-325 (1011)
351 PRK06871 DNA polymerase III su 92.8 0.26 5.5E-06 51.0 6.6 41 269-310 105-145 (325)
352 cd01129 PulE-GspE PulE/GspE Th 92.7 0.28 6.1E-06 49.4 6.8 44 140-187 59-104 (264)
353 TIGR02928 orc1/cdc6 family rep 92.7 0.68 1.5E-05 49.0 10.1 25 163-188 41-65 (365)
354 PRK13342 recombination factor 92.6 0.71 1.5E-05 49.8 10.1 16 163-178 37-52 (413)
355 PRK08533 flagellar accessory p 92.6 1.1 2.4E-05 44.1 10.6 51 161-218 23-73 (230)
356 PF01695 IstB_IS21: IstB-like 92.5 0.21 4.6E-06 47.0 5.2 48 157-211 42-89 (178)
357 KOG0744 AAA+-type ATPase [Post 92.5 0.93 2E-05 45.8 9.7 114 162-287 177-325 (423)
358 TIGR03877 thermo_KaiC_1 KaiC d 92.5 0.68 1.5E-05 45.8 9.1 51 162-219 21-71 (237)
359 KOG0733 Nuclear AAA ATPase (VC 92.5 0.41 8.8E-06 52.3 7.7 55 121-178 504-561 (802)
360 cd01130 VirB11-like_ATPase Typ 92.4 0.31 6.8E-06 46.2 6.4 32 147-178 9-41 (186)
361 KOG0745 Putative ATP-dependent 92.4 0.15 3.2E-06 53.3 4.2 24 163-188 227-250 (564)
362 PRK13341 recombination factor 92.3 0.78 1.7E-05 52.8 10.4 41 271-316 109-149 (725)
363 PRK13851 type IV secretion sys 92.2 0.23 5E-06 51.8 5.5 44 159-209 159-202 (344)
364 PRK10416 signal recognition pa 92.2 3.1 6.7E-05 43.0 13.8 53 270-322 195-254 (318)
365 PRK08451 DNA polymerase III su 92.2 0.76 1.6E-05 50.8 9.7 40 269-309 115-154 (535)
366 TIGR02525 plasmid_TraJ plasmid 92.2 0.35 7.6E-06 51.0 6.9 27 162-189 149-175 (372)
367 TIGR02538 type_IV_pilB type IV 92.1 0.37 7.9E-06 54.1 7.3 45 140-188 295-341 (564)
368 TIGR00643 recG ATP-dependent D 92.1 0.76 1.6E-05 52.5 10.0 76 369-444 283-363 (630)
369 PRK14959 DNA polymerase III su 92.0 0.54 1.2E-05 52.7 8.4 17 163-179 39-55 (624)
370 TIGR02524 dot_icm_DotB Dot/Icm 92.0 0.31 6.8E-06 51.2 6.2 27 161-188 133-159 (358)
371 KOG1513 Nuclear helicase MOP-3 92.0 0.2 4.3E-06 55.8 4.8 76 413-488 850-937 (1300)
372 PRK07993 DNA polymerase III su 91.9 0.25 5.4E-06 51.5 5.3 41 269-310 106-146 (334)
373 KOG0739 AAA+-type ATPase [Post 91.8 3.6 7.7E-05 41.3 12.7 125 156-330 155-296 (439)
374 PRK14873 primosome assembly pr 91.8 0.71 1.5E-05 52.6 9.3 75 370-445 188-264 (665)
375 KOG0991 Replication factor C, 91.8 0.37 7.9E-06 46.3 5.7 16 163-178 49-64 (333)
376 PRK13900 type IV secretion sys 91.8 0.48 1E-05 49.3 7.3 41 161-208 159-199 (332)
377 PRK14948 DNA polymerase III su 91.8 0.48 1E-05 53.6 7.8 25 163-188 39-63 (620)
378 TIGR00580 mfd transcription-re 91.7 0.93 2E-05 53.7 10.3 75 370-444 500-579 (926)
379 PRK11034 clpA ATP-dependent Cl 91.6 1.4 3.1E-05 51.0 11.5 44 273-316 280-327 (758)
380 KOG2028 ATPase related to the 91.6 0.79 1.7E-05 47.0 8.2 49 163-217 163-211 (554)
381 PF02534 T4SS-DNA_transf: Type 91.5 0.22 4.7E-06 54.9 4.7 57 163-231 45-101 (469)
382 TIGR00678 holB DNA polymerase 91.5 1.7 3.7E-05 41.1 10.3 26 163-189 15-40 (188)
383 cd01126 TraG_VirD4 The TraG/Tr 91.4 0.18 4E-06 53.8 3.9 56 164-231 1-56 (384)
384 PRK14954 DNA polymerase III su 91.3 0.7 1.5E-05 52.1 8.5 39 269-308 125-163 (620)
385 PRK06964 DNA polymerase III su 91.3 0.8 1.7E-05 47.8 8.3 41 149-190 3-48 (342)
386 COG0630 VirB11 Type IV secreto 91.2 0.69 1.5E-05 47.7 7.7 57 145-208 125-182 (312)
387 KOG0701 dsRNA-specific nucleas 91.1 0.15 3.2E-06 62.2 2.9 94 372-465 294-399 (1606)
388 TIGR02639 ClpA ATP-dependent C 91.1 3.1 6.8E-05 48.4 13.8 16 163-178 204-219 (731)
389 PRK00440 rfc replication facto 91.0 3.5 7.5E-05 42.6 13.0 38 271-309 102-139 (319)
390 PRK06090 DNA polymerase III su 91.0 1.6 3.4E-05 45.1 10.0 42 269-311 106-147 (319)
391 PF01443 Viral_helicase1: Vira 90.9 0.3 6.6E-06 48.0 4.7 20 165-185 1-20 (234)
392 PRK08699 DNA polymerase III su 90.8 2.8 6.1E-05 43.5 11.8 41 269-311 111-151 (325)
393 KOG0298 DEAD box-containing he 90.7 0.34 7.3E-06 57.0 5.3 98 367-469 1218-1316(1394)
394 PRK04841 transcriptional regul 90.6 2.2 4.8E-05 51.2 12.5 41 273-313 123-163 (903)
395 PF02572 CobA_CobO_BtuR: ATP:c 90.5 2 4.4E-05 39.9 9.3 140 167-322 8-149 (172)
396 COG0513 SrmB Superfamily II DN 90.5 2.2 4.8E-05 47.4 11.3 108 373-489 102-226 (513)
397 PF08423 Rad51: Rad51; InterP 90.4 0.57 1.2E-05 46.9 6.1 54 155-208 26-84 (256)
398 PRK07133 DNA polymerase III su 90.3 0.53 1.2E-05 53.6 6.4 34 269-303 116-149 (725)
399 PRK03992 proteasome-activating 90.3 1.1 2.4E-05 47.9 8.5 16 163-178 166-181 (389)
400 KOG0331 ATP-dependent RNA heli 90.3 3.1 6.7E-05 45.4 11.7 90 370-463 165-272 (519)
401 COG1219 ClpX ATP-dependent pro 90.2 0.23 4.9E-06 50.0 3.0 25 162-188 97-121 (408)
402 PRK06305 DNA polymerase III su 90.2 1 2.2E-05 49.0 8.3 36 270-306 120-155 (451)
403 PRK10689 transcription-repair 90.1 1.5 3.4E-05 53.2 10.4 76 369-444 648-728 (1147)
404 KOG0738 AAA+-type ATPase [Post 90.1 1.1 2.4E-05 46.4 7.8 22 157-178 235-261 (491)
405 PF10593 Z1: Z1 domain; Inter 90.1 1.1 2.3E-05 44.3 7.6 87 394-486 110-202 (239)
406 TIGR03881 KaiC_arch_4 KaiC dom 90.1 1.8 3.9E-05 42.4 9.3 49 162-217 20-68 (229)
407 KOG0741 AAA+-type ATPase [Post 90.1 3.4 7.4E-05 44.7 11.5 68 130-205 494-573 (744)
408 PRK07399 DNA polymerase III su 90.1 1.5 3.2E-05 45.4 8.9 50 256-309 111-160 (314)
409 PRK13897 type IV secretion sys 90.0 0.39 8.5E-06 53.9 5.0 58 163-232 159-216 (606)
410 TIGR00767 rho transcription te 90.0 1.6 3.5E-05 46.2 9.1 26 161-187 167-192 (415)
411 PRK13764 ATPase; Provisional 89.9 0.54 1.2E-05 52.5 6.0 27 161-188 256-282 (602)
412 PRK09087 hypothetical protein; 89.9 1 2.3E-05 44.1 7.3 38 274-313 90-127 (226)
413 KOG0742 AAA+-type ATPase [Post 89.8 0.52 1.1E-05 49.0 5.1 16 163-178 385-400 (630)
414 PRK06647 DNA polymerase III su 89.8 0.82 1.8E-05 51.2 7.2 24 164-188 40-63 (563)
415 PRK11823 DNA repair protein Ra 89.7 1.7 3.7E-05 47.3 9.5 51 162-219 80-130 (446)
416 KOG0732 AAA+-type ATPase conta 89.7 0.47 1E-05 55.5 5.4 63 251-315 345-417 (1080)
417 TIGR03819 heli_sec_ATPase heli 89.7 0.82 1.8E-05 47.8 6.8 63 137-208 154-217 (340)
418 cd01121 Sms Sms (bacterial rad 89.6 1.8 4E-05 45.8 9.4 50 162-218 82-131 (372)
419 COG0593 DnaA ATPase involved i 89.6 1.7 3.7E-05 46.1 9.0 47 271-317 175-223 (408)
420 cd00984 DnaB_C DnaB helicase C 89.5 2.8 6.2E-05 41.3 10.4 38 161-203 12-49 (242)
421 TIGR02397 dnaX_nterm DNA polym 89.5 2.5 5.4E-05 44.5 10.5 25 163-188 37-61 (355)
422 PRK14971 DNA polymerase III su 89.3 1.6 3.5E-05 49.4 9.3 41 269-311 119-159 (614)
423 PF06733 DEAD_2: DEAD_2; Inte 89.3 0.2 4.3E-06 46.9 1.8 45 241-285 114-159 (174)
424 cd01131 PilT Pilus retraction 89.3 0.51 1.1E-05 45.2 4.6 39 165-208 4-42 (198)
425 PF03237 Terminase_6: Terminas 89.3 5.2 0.00011 42.0 12.9 143 166-326 1-153 (384)
426 TIGR02858 spore_III_AA stage I 89.2 5.1 0.00011 40.4 11.8 34 154-189 100-136 (270)
427 PF12846 AAA_10: AAA-like doma 89.2 1.1 2.3E-05 45.8 7.3 43 162-210 1-43 (304)
428 PRK14953 DNA polymerase III su 89.1 2.6 5.6E-05 46.4 10.4 41 269-311 117-157 (486)
429 PRK06067 flagellar accessory p 89.0 2.5 5.3E-05 41.7 9.4 51 162-219 25-75 (234)
430 TIGR03878 thermo_KaiC_2 KaiC d 89.0 2.8 6E-05 42.1 9.8 36 162-203 36-71 (259)
431 TIGR03689 pup_AAA proteasome A 88.9 1.7 3.7E-05 47.8 8.7 25 162-187 216-240 (512)
432 KOG1133 Helicase of the DEAD s 88.9 0.49 1.1E-05 52.3 4.4 41 147-187 15-59 (821)
433 PF00437 T2SE: Type II/IV secr 88.7 0.3 6.5E-06 49.4 2.7 51 152-208 116-167 (270)
434 PHA00729 NTP-binding motif con 88.6 3 6.5E-05 40.6 9.3 74 248-322 60-138 (226)
435 PF13555 AAA_29: P-loop contai 88.3 0.63 1.4E-05 35.2 3.5 25 162-188 23-47 (62)
436 COG4626 Phage terminase-like p 88.2 3.7 7.9E-05 44.9 10.5 147 147-310 61-223 (546)
437 KOG2543 Origin recognition com 88.2 5.7 0.00012 41.3 11.2 45 271-315 115-161 (438)
438 TIGR00763 lon ATP-dependent pr 88.1 2 4.4E-05 50.3 9.3 17 162-178 347-363 (775)
439 PRK14701 reverse gyrase; Provi 88.1 2.4 5.1E-05 53.3 10.2 61 369-429 121-187 (1638)
440 COG1132 MdlB ABC-type multidru 88.1 2.2 4.8E-05 48.2 9.4 40 270-309 482-521 (567)
441 TIGR01243 CDC48 AAA family ATP 88.0 1.5 3.3E-05 51.1 8.2 44 272-315 547-601 (733)
442 TIGR01243 CDC48 AAA family ATP 87.9 3.5 7.5E-05 48.1 11.1 17 162-178 212-228 (733)
443 PRK05564 DNA polymerase III su 87.8 3.6 7.7E-05 42.6 10.1 41 269-311 91-131 (313)
444 COG2909 MalT ATP-dependent tra 87.8 2.3 5E-05 48.6 8.9 41 273-313 131-171 (894)
445 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.6 2 4.3E-05 38.8 7.1 37 271-310 88-124 (144)
446 COG2109 BtuR ATP:corrinoid ade 87.5 3.2 7E-05 38.8 8.3 53 270-322 121-175 (198)
447 COG1200 RecG RecG-like helicas 87.5 2.5 5.4E-05 47.2 8.8 76 369-444 310-390 (677)
448 COG0541 Ffh Signal recognition 87.5 5.5 0.00012 42.3 10.9 130 165-323 103-235 (451)
449 PRK04328 hypothetical protein; 87.5 4.7 0.0001 40.2 10.3 51 162-219 23-73 (249)
450 COG2255 RuvB Holliday junction 87.4 1.2 2.7E-05 44.3 5.8 16 163-178 53-68 (332)
451 PRK13850 type IV secretion sys 87.4 0.68 1.5E-05 52.7 4.7 57 163-231 140-196 (670)
452 COG1618 Predicted nucleotide k 87.4 0.55 1.2E-05 42.6 3.1 118 164-299 7-130 (179)
453 KOG0058 Peptide exporter, ABC 87.4 3.5 7.6E-05 46.4 9.9 143 161-310 493-660 (716)
454 PTZ00454 26S protease regulato 87.2 2.8 6E-05 44.9 9.0 52 124-178 141-195 (398)
455 cd03239 ABC_SMC_head The struc 86.9 0.64 1.4E-05 43.7 3.6 42 270-311 115-157 (178)
456 TIGR02788 VirB11 P-type DNA tr 86.9 0.65 1.4E-05 47.9 3.9 18 161-178 143-160 (308)
457 cd01128 rho_factor Transcripti 86.9 1.6 3.6E-05 43.3 6.6 20 159-178 13-32 (249)
458 TIGR03346 chaperone_ClpB ATP-d 86.8 3.8 8.3E-05 48.6 10.7 16 163-178 195-210 (852)
459 PF03266 NTPase_1: NTPase; In 86.8 0.31 6.8E-06 45.3 1.3 28 270-297 94-123 (168)
460 TIGR01420 pilT_fam pilus retra 86.8 0.94 2E-05 47.5 5.0 42 162-208 122-163 (343)
461 PF10412 TrwB_AAD_bind: Type I 86.6 0.52 1.1E-05 50.3 3.1 48 158-211 11-58 (386)
462 PRK05973 replicative DNA helic 86.6 1.3 2.7E-05 43.7 5.5 82 131-219 24-114 (237)
463 COG1198 PriA Primosomal protei 86.5 1.1 2.4E-05 51.1 5.7 73 370-443 245-318 (730)
464 cd01393 recA_like RecA is a b 86.4 1.8 3.9E-05 42.3 6.6 44 162-206 19-63 (226)
465 COG1197 Mfd Transcription-repa 86.4 7.2 0.00016 46.4 12.2 123 152-283 732-885 (1139)
466 PRK14970 DNA polymerase III su 86.3 4.9 0.00011 42.6 10.4 24 163-187 40-63 (367)
467 CHL00176 ftsH cell division pr 86.3 3.7 8.1E-05 46.7 9.8 16 163-178 217-232 (638)
468 CHL00095 clpC Clp protease ATP 86.2 4.6 0.0001 47.7 10.9 17 163-179 201-217 (821)
469 KOG0347 RNA helicase [RNA proc 86.1 2.1 4.6E-05 46.3 7.1 53 372-428 265-321 (731)
470 PRK08058 DNA polymerase III su 86.1 2.2 4.7E-05 44.5 7.3 41 269-311 108-148 (329)
471 PF03969 AFG1_ATPase: AFG1-lik 86.1 11 0.00024 39.7 12.6 110 162-316 62-172 (362)
472 cd01127 TrwB Bacterial conjuga 86.1 0.62 1.3E-05 50.2 3.4 49 156-210 36-84 (410)
473 TIGR03345 VI_ClpV1 type VI sec 86.1 8.2 0.00018 45.7 12.8 27 152-178 192-224 (852)
474 PRK06904 replicative DNA helic 86.0 6.7 0.00014 43.0 11.3 115 162-285 221-348 (472)
475 COG1074 RecB ATP-dependent exo 85.9 1.2 2.6E-05 54.5 5.9 56 161-217 15-70 (1139)
476 KOG2004 Mitochondrial ATP-depe 85.9 1.8 3.9E-05 48.4 6.6 94 148-284 416-518 (906)
477 PHA00012 I assembly protein 85.8 8.4 0.00018 39.5 10.8 25 165-189 4-28 (361)
478 KOG0344 ATP-dependent RNA heli 85.7 13 0.00028 40.8 12.8 97 171-281 366-466 (593)
479 KOG0060 Long-chain acyl-CoA tr 85.5 0.51 1.1E-05 51.3 2.3 48 251-300 570-617 (659)
480 TIGR02868 CydC thiol reductant 85.5 1.5 3.3E-05 49.0 6.3 27 161-189 360-386 (529)
481 PHA03372 DNA packaging termina 85.4 8.8 0.00019 42.6 11.5 130 162-313 202-338 (668)
482 PF12775 AAA_7: P-loop contain 85.3 1.8 3.9E-05 43.8 6.0 20 159-178 30-49 (272)
483 PF04931 DNA_pol_phi: DNA poly 85.1 0.52 1.1E-05 55.2 2.3 10 132-141 737-746 (784)
484 PRK07414 cob(I)yrinic acid a,c 84.9 2.4 5.2E-05 39.5 6.1 52 270-321 114-167 (178)
485 PRK11634 ATP-dependent RNA hel 84.8 3.7 8E-05 46.8 8.9 70 370-443 74-154 (629)
486 COG5008 PilU Tfp pilus assembl 84.7 0.94 2E-05 44.5 3.5 22 164-186 129-150 (375)
487 PRK04537 ATP-dependent RNA hel 84.7 5.8 0.00013 44.8 10.3 73 196-279 257-333 (572)
488 COG0466 Lon ATP-dependent Lon 84.4 3.1 6.6E-05 46.8 7.6 52 229-287 381-433 (782)
489 COG4555 NatA ABC-type Na+ tran 84.3 2.9 6.2E-05 39.7 6.3 53 269-321 149-201 (245)
490 cd00268 DEADc DEAD-box helicas 84.3 6 0.00013 37.7 9.1 72 369-444 68-149 (203)
491 KOG1807 Helicases [Replication 84.3 3.7 8E-05 46.2 8.1 70 147-217 378-448 (1025)
492 PRK13695 putative NTPase; Prov 84.3 9 0.00019 35.6 10.0 23 164-187 2-24 (174)
493 PRK10865 protein disaggregatio 84.3 5.3 0.00012 47.3 10.2 16 163-178 200-215 (857)
494 KOG0780 Signal recognition par 84.0 9.4 0.0002 39.8 10.3 130 165-323 104-236 (483)
495 cd03247 ABCC_cytochrome_bd The 84.0 3.8 8.2E-05 38.4 7.3 41 269-310 114-154 (178)
496 TIGR01389 recQ ATP-dependent D 83.9 13 0.00028 42.2 12.9 74 370-443 53-132 (591)
497 KOG0740 AAA+-type ATPase [Post 83.9 3.6 7.8E-05 43.8 7.7 46 271-316 245-302 (428)
498 PRK13822 conjugal transfer cou 83.8 1.4 3E-05 50.1 4.9 59 163-233 225-283 (641)
499 PRK11776 ATP-dependent RNA hel 83.7 3.7 8.1E-05 45.0 8.2 71 370-444 72-153 (460)
500 COG1122 CbiO ABC-type cobalt t 83.7 2.2 4.7E-05 42.0 5.6 32 272-303 157-188 (235)
No 1
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-102 Score=778.52 Aligned_cols=460 Identities=62% Similarity=0.962 Sum_probs=447.4
Q ss_pred CCCcCCCCCCCCcccC---CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHH
Q 006500 110 TKSFFAPADGASFHAN---SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186 (643)
Q Consensus 110 ~~~~~~~~~~~~~~~~---~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~ 186 (643)
...||++.+..+.... +|.+++||++|+++|..+||..|||||..+||.++.|+|+|.||.||||||.+|++|+|++
T Consensus 163 ~~~Ffa~~dg~s~~~~~~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLER 242 (691)
T KOG0338|consen 163 KKFFFATEDGVSADTQMNESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILER 242 (691)
T ss_pred ccccccccchhhhhhHHhhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHH
Confidence 4557777777666554 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCc
Q 006500 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS 266 (643)
Q Consensus 187 l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~ 266 (643)
+++++.+...++||||+|||+|+.|++.+.+++++|+.+.+++++||.+...|+..|+..|||||+|||||++||.+.++
T Consensus 243 LlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~s 322 (691)
T KOG0338|consen 243 LLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPS 322 (691)
T ss_pred HhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEE
Q 006500 267 VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346 (643)
Q Consensus 267 ~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 346 (643)
++++++.++|+||||+|++.||...+.+|++.||+++|+++|||||+..+.+++.+.+++|+.+.+++....+..++|.|
T Consensus 323 f~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEF 402 (691)
T KOG0338|consen 323 FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEF 402 (691)
T ss_pred ccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhhhHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEe
Q 006500 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (643)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLva 426 (643)
+++++.....+..++..++.+.+..++|||+.|++.|++|..+|..+|++++.|||+++|.+|.+.++.|++++++||||
T Consensus 403 iRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLia 482 (691)
T KOG0338|consen 403 IRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIA 482 (691)
T ss_pred heeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHH---hcCcccccchhhhhH
Q 006500 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR---AGSKLKSRIVAEQSI 503 (643)
Q Consensus 427 T~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~---~~~~~~~~~~~~~~~ 503 (643)
||+|+|||||++|.+||||.+|.+...|+||+|||+|+|+.|.+++|+...++++++.|.+. .+.+++.+.+++..+
T Consensus 483 TDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~I 562 (691)
T KOG0338|consen 483 TDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVI 562 (691)
T ss_pred echhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccccccHHHHHHHh
Q 006500 504 TKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAV 569 (643)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (643)
.+|...+++|++.+..++.++++++.++++++.+.+++||+++.+++.++|.|+|||+++++++.+
T Consensus 563 ek~~~~ieemE~~iq~vl~eE~~ekel~~ae~ql~k~en~Le~g~ei~arprRtWFqte~~kk~~K 628 (691)
T KOG0338|consen 563 EKFRKKIEEMEDTIQAVLDEEREEKELSKAEAQLEKGENMLEHGDEIYARPRRTWFQTEKDKKASK 628 (691)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccccCccchhhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988664
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-75 Score=571.14 Aligned_cols=374 Identities=41% Similarity=0.667 Sum_probs=355.1
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
..+|.+|++.+.+.++|...|+..||++|.++||.++.|+|+|+.|.||||||.+|+||++++++..+.. +.+|||+
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~---~~~lVLt 136 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKL---FFALVLT 136 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCC---ceEEEec
Confidence 5678999999999999999999999999999999999999999999999999999999999999987653 6899999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchh
Q 006500 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (643)
|||+||.|+.+.+..+....|+++.++.||.+...+...+...|+|+|+|||+|++|+.+...+.+..++++|+||||++
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrl 216 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRL 216 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred ccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHH
Q 006500 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (643)
Q Consensus 284 ~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (643)
+++.|...+..|++.+|..+|+++|||||+..+.++....+.+|+.+.+...+...+.+.|.+.++.. ..+..+|..
T Consensus 217 Ld~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~---k~K~~yLV~ 293 (476)
T KOG0330|consen 217 LDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG---KDKDTYLVY 293 (476)
T ss_pred hhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc---cccchhHHH
Confidence 99999999999999999999999999999999999999999999999988888888889998888754 457778888
Q ss_pred HhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEE
Q 006500 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (643)
Q Consensus 364 ~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI 443 (643)
+++...+..+||||++...+.+++-+|+..|+.+..|||.|++..|..+++.|++|.++||||||+++||||+|.|++||
T Consensus 294 ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VV 373 (476)
T KOG0330|consen 294 LLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVV 373 (476)
T ss_pred HHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEE
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccccchhhhhH
Q 006500 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI 503 (643)
Q Consensus 444 ~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~ 503 (643)
|||+|.+..+||||+||+||+|++|.+|+|++-.|...+.+|+..++.++....++...+
T Consensus 374 NyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~ 433 (476)
T KOG0330|consen 374 NYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEV 433 (476)
T ss_pred ecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHH
Confidence 999999999999999999999999999999999999999999999998887766665433
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-69 Score=563.46 Aligned_cols=363 Identities=39% Similarity=0.579 Sum_probs=325.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcC---CCCCCCeEEEE
Q 006500 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR---PKRIPAIRVLI 201 (643)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~---~~~~~~~~vLi 201 (643)
..|+.++|+..+..++...||..|||||.+.||.++.|+|++..|.||||||++|++|++.++... ..+..+|++||
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 389999999999999999999999999999999999999999999999999999999999999862 12345789999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCc
Q 006500 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (643)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (643)
|+|||+||.|+...+..++....+++.+++||.+...|...+..+.+|+|+|||||++++... ...|+++.++|+||||
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g-~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG-SLNLSRVTYLVLDEAD 249 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC-CccccceeEEEeccHH
Confidence 999999999999999999998899999999999999999999999999999999999999886 6889999999999999
Q ss_pred hhccCChHHHHHHHHHHC-CCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCC--CCCCCceEEEEEEechhhhhHH
Q 006500 282 RLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA--KRPSTLTEEVVRIRRMREVNQE 358 (643)
Q Consensus 282 ~l~~~g~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 358 (643)
+|+++||.+.+..|+..+ ++.+|++++|||+|.++..+...++.+|+.+.+.... ....++.|....+.......+.
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l 329 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKL 329 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHH
Confidence 999999999999999999 5566899999999999999999999999888776442 3344566666666543333333
Q ss_pred HHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCC
Q 006500 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (643)
Q Consensus 359 ~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~ 438 (643)
..++.-.....++++||||+|+..|+.|...|...++++..|||+.+|.+|..+|+.|++|++.||||||+|+||||||+
T Consensus 330 ~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~d 409 (519)
T KOG0331|consen 330 GKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPD 409 (519)
T ss_pred HHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcc
Confidence 33333333446789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHH
Q 006500 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (643)
Q Consensus 439 v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~ 488 (643)
|++|||||+|.+++.|+||+|||||+|+.|.+++|++..+......+.+.
T Consensus 410 V~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~ 459 (519)
T KOG0331|consen 410 VDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKV 459 (519)
T ss_pred ccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776666554
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-67 Score=571.87 Aligned_cols=366 Identities=43% Similarity=0.664 Sum_probs=337.1
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcC
Q 006500 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (643)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~P 204 (643)
..|++|+|++.+++++..+||..|||+|..+||.++.|+|+++.|+||||||++|++|+++++.........+ +||++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~-aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVS-ALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCc-eEEECC
Confidence 6799999999999999999999999999999999999999999999999999999999999976431111112 999999
Q ss_pred cHHHHHHHHHHHHHHhhcC-CceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchh
Q 006500 205 TRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (643)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~-~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (643)
||+||.|+++.+..++.+. ++++.+++||.+...+...+..+++|||+|||||++++... .+.++.+.++|+||||+|
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEADrm 186 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRM 186 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHhhh
Confidence 9999999999999999998 79999999999999999888888999999999999999987 789999999999999999
Q ss_pred ccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCC--CCCCceEEEEEEechhhhhHHHHH
Q 006500 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTEEVVRIRRMREVNQEAVL 361 (643)
Q Consensus 284 ~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 361 (643)
+++||...+..|+..+|..+|+++||||++..+..+.+.++.+|..+.+..... ....+.|.++.+.... .+...|
T Consensus 187 Ld~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~--~k~~~L 264 (513)
T COG0513 187 LDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE--EKLELL 264 (513)
T ss_pred hcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH--HHHHHH
Confidence 999999999999999999999999999999999999999999998887764444 6678888888876432 577888
Q ss_pred HHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccE
Q 006500 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441 (643)
Q Consensus 362 ~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~ 441 (643)
..++......++||||+|+..++.|+..|...|+++..|||+|+|.+|.+++..|++|+.+||||||+++||||||+|++
T Consensus 265 ~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 265 LKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 88888777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHHhhcccCCCccEEEEEeccC-cHHHHHHHHHHhcCccc
Q 006500 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLK 494 (643)
Q Consensus 442 VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~-d~~~l~~i~~~~~~~~~ 494 (643)
|||||+|.++..|+||+|||||+|..|.+++|+++. +...+..|.+..+..+.
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999986 89999999988655543
No 5
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-67 Score=508.32 Aligned_cols=378 Identities=41% Similarity=0.606 Sum_probs=340.2
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEE
Q 006500 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (643)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil 202 (643)
....|+.|||++++.+.|..+|+..|||+|+.|||.++.|+|+|.+|.||||||++|.+|+|++|...+. +.-+||+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~---giFalvl 81 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY---GIFALVL 81 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC---cceEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999999987765 4468999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhcc---CccCCCCeeEEEEeC
Q 006500 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS---MSVDLDDLAVLILDE 279 (643)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~---~~~~l~~i~~lVvDE 279 (643)
+|||+||.|+.+.|..+.+..++++++++||.+.-.+...+..++||||+|||+|.+++... ..+.+.+++++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999876 334688999999999
Q ss_pred CchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCC--CeEEecCCCCCCCCCceEEEEEEechhhhhH
Q 006500 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK--PLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (643)
Q Consensus 280 ah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (643)
||++++..|...+..+...+|..+|+++||||+++.+..+......+ +..+........+..+.+.++.+.. ..+
T Consensus 162 ADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~---~vk 238 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI---DVK 238 (442)
T ss_pred hhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecch---hhh
Confidence 99999999999999999999999999999999999998887766665 3444555555666778888877743 345
Q ss_pred HHHHHHHhhc---cCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccC
Q 006500 358 EAVLLSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (643)
Q Consensus 358 ~~~l~~~~~~---~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 434 (643)
..++..+++. ...+.++||+++...++.|+..|..+++.+..+||.|+|.+|..++.+|+++..+||||||+|+|||
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 5555555542 2467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccccchhhhhHHHH
Q 006500 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKW 506 (643)
Q Consensus 435 Di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 506 (643)
|||.|+.|||||+|.+|..|+||+||++|+|+.|.+++++++.|.+.+..|++..+.++.+..........+
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~~~~~ 390 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRTVELY 390 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccchhhhee
Confidence 999999999999999999999999999999999999999999999999999999999988766655544433
No 6
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3e-66 Score=521.52 Aligned_cols=385 Identities=34% Similarity=0.512 Sum_probs=342.1
Q ss_pred cccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCC-CCCCeEEE
Q 006500 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVL 200 (643)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vL 200 (643)
.....|..+.|++..++++..+||..+|++|+..|+.++.|+|+++.|.||||||++|+||+++.+++.+. ..++..+|
T Consensus 79 ~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vl 158 (543)
T KOG0342|consen 79 TTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVL 158 (543)
T ss_pred hhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEE
Confidence 34567888999999999999999999999999999999999999999999999999999999999987543 23577899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcC-CceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeC
Q 006500 201 ILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (643)
Q Consensus 201 il~Ptr~La~Q~~~~~~~l~~~~-~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (643)
||||||+||.|++.+++.+..+. ++.+.++.||.........+..+++|+|+|||||++||.+...+.+.+++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999999988 99999999999998888888889999999999999999998888888889999999
Q ss_pred CchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCC-CeEEecCCCCCC--CCCceEEEEEEechhhhh
Q 006500 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKR--PSTLTEEVVRIRRMREVN 356 (643)
Q Consensus 280 ah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~-p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 356 (643)
||+++++||+..+.+|+..+|+.+|+++||||.++.+.++.+..+.. |+.+.+...... ...+.|.++..... .
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~---~ 315 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSD---S 315 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecccc---c
Confidence 99999999999999999999999999999999999999999988876 777777654433 34566656555432 2
Q ss_pred HHHHHHHHhhccCC-ceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCC
Q 006500 357 QEAVLLSLCSKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435 (643)
Q Consensus 357 ~~~~l~~~~~~~~~-~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlD 435 (643)
....+..++++... .++||||+|...+..++.+|+...++|..|||..+|..|..+...|++.+..||||||+++||+|
T Consensus 316 ~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD 395 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLD 395 (543)
T ss_pred hHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCC
Confidence 35666677776665 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccccchhhhhHHHHHHHHHH
Q 006500 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQ 512 (643)
Q Consensus 436 i~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (643)
+|+|++||+||+|.++.+||||+|||||.|+.|.+++++.+++..+++.+. ..++.....++..........+.
T Consensus 396 ~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~~v~~~~~~ 469 (543)
T KOG0342|consen 396 IPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPEDVQSQLEK 469 (543)
T ss_pred CCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 45565555555544444444333
No 7
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-65 Score=513.64 Aligned_cols=361 Identities=39% Similarity=0.629 Sum_probs=324.3
Q ss_pred CCcccCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCe--EEE
Q 006500 125 NSFMELN--LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI--RVL 200 (643)
Q Consensus 125 ~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~--~vL 200 (643)
.+|++++ |++++++++..+||..+||+|..+||.++.++|+++.++||||||+||++|+++.++++....++. .+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3466554 569999999999999999999999999999999999999999999999999999998776655544 799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhc-CCceEEEEecCCChHHHHHHhc-CCCcEEEECchhHHHHHhc-cCccCCCCeeEEEE
Q 006500 201 ILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRN-SMSVDLDDLAVLIL 277 (643)
Q Consensus 201 il~Ptr~La~Q~~~~~~~l~~~-~~~~v~~~~g~~~~~~~~~~l~-~~~~Ivv~Tp~~L~~~l~~-~~~~~l~~i~~lVv 277 (643)
||+|||+||.|+.+++..|... .++.+.+++||.+.......+. .++.|+|+|||||.+++.. ...+++.+++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999999776 7899999999988776665554 5789999999999999987 33456779999999
Q ss_pred eCCchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCC--CCCCceEEEEEEechhhh
Q 006500 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTEEVVRIRRMREV 355 (643)
Q Consensus 278 DEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 355 (643)
||||+++++||...+..|+..+|+.++|-+||||.+..+.++....+.+|+.+.+..... .|..+...+..+.. .
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a---~ 240 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA---D 240 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH---H
Confidence 999999999999999999999999999999999999999999999999999998877665 67778777777754 4
Q ss_pred hHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhc--CCceEEccCCCCHHHHHHHHHHhhcCCceEEEeccccccc
Q 006500 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (643)
Q Consensus 356 ~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (643)
.+...+..++......++|||++|...++.....|... ...+..+||.|++..|..++..|.+....+|+|||+++||
T Consensus 241 eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 241 EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 56777788888777889999999999999998888765 6789999999999999999999999888899999999999
Q ss_pred CCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHH
Q 006500 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (643)
Q Consensus 434 lDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~ 488 (643)
||||+|++||+||+|.++..|+||+|||||+|+.|.+++|+.+.+..++..+.-+
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~ 375 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIK 375 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999888887776544
No 8
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-66 Score=528.30 Aligned_cols=371 Identities=39% Similarity=0.596 Sum_probs=321.1
Q ss_pred CCcccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhHHhHHHHHhcCCCC-----
Q 006500 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKR----- 193 (643)
Q Consensus 120 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~----- 193 (643)
.....+.|.+|+|+..++++|..+||..||+||...||.+..| .|++..|.||||||++|.||+++.+......
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3455778999999999999999999999999999999999999 7999999999999999999999976654321
Q ss_pred ---CCCe--EEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCcc-
Q 006500 194 ---IPAI--RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV- 267 (643)
Q Consensus 194 ---~~~~--~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~- 267 (643)
...+ -.||++|||+||.|+.+.+..++.++++++..++||.+...|.+.++..++|||+|||||+.++......
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 1233 4999999999999999999999999999999999999999999999999999999999999999765432
Q ss_pred -CCCCeeEEEEeCCchhccCChHHHHHHHHHHCC-----CCceeEEEeeccchh---------------------HHHHH
Q 006500 268 -DLDDLAVLILDEADRLLELGFSAEIHELVRLCP-----KRRQTMLFSATLTED---------------------VDELI 320 (643)
Q Consensus 268 -~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~-----~~~q~i~~SAT~~~~---------------------~~~~~ 320 (643)
.+.++.++||||||+|++.||...+..|++.+. ..+|+++||||++-. +..++
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 588899999999999999999999999988775 468999999998721 22222
Q ss_pred HH--hcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceE
Q 006500 321 KL--SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398 (643)
Q Consensus 321 ~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~ 398 (643)
.. +..+|..+...+.......+.+..+.|.. ..+..+|+.++.+ +++++|||||++..+.+|.-+|+.+++...
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~---~eKD~ylyYfl~r-yPGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPP---LEKDLYLYYFLTR-YPGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCc---cccceeEEEEEee-cCCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 21 23456777777666666667776666643 3344455545444 578999999999999999999999999999
Q ss_pred EccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCc
Q 006500 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (643)
Q Consensus 399 ~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d 478 (643)
.||+.|.|.+|.+.+++|++....||||||+|+||||||+|.|||||..|.+..-|+||.|||+|++..|..++|+.|.+
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccc
Q 006500 479 RSLLKAIAKRAGSKLK 494 (643)
Q Consensus 479 ~~~l~~i~~~~~~~~~ 494 (643)
...++.|.+.+.....
T Consensus 572 ~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 572 VGPLKKLCKTLKKKED 587 (731)
T ss_pred hHHHHHHHHHHhhccC
Confidence 9999888887754433
No 9
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-66 Score=521.72 Aligned_cols=385 Identities=35% Similarity=0.564 Sum_probs=346.6
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCC-CCCCeEEEEE
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLIL 202 (643)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vLil 202 (643)
...|.+|+|+..++++|...+|..+|.+|+.+||.++.|+|+|.+|.||||||++|++|+|++|++..= ...|.-+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 457899999999999999999999999999999999999999999999999999999999999987532 2345669999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCch
Q 006500 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (643)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (643)
.|||+||.|+++.+.+.+.++.+.++++.||.........+ ...+|+|||||||+.||.....++..++.++|+||||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 99999999999999999999999999999998866554444 45799999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCC--CCCCCCCceEEEEEEechhhhhHHHH
Q 006500 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP--SAKRPSTLTEEVVRIRRMREVNQEAV 360 (643)
Q Consensus 283 l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (643)
++++||...+..|+..+|+.+|+++||||.+..+.+++++.+.+|..+.+.. ....|.++.|.++.++ ...+..+
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~---l~~Ki~~ 303 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP---LEDKIDM 303 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe---hhhHHHH
Confidence 9999999999999999999999999999999999999999999998887753 3467888999888875 4568889
Q ss_pred HHHHhhccCCceEEEEeCCHHHHHHHHHHHhhc--CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCC
Q 006500 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (643)
Q Consensus 361 l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~ 438 (643)
|..++..+...++|||+.|.+.+..++..|..+ |+++..|||.|+|..|..++..|...+.-||+|||+++||||+|.
T Consensus 304 L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpa 383 (758)
T KOG0343|consen 304 LWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPA 383 (758)
T ss_pred HHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcc
Confidence 999999999999999999999999999999865 899999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCc-HHHHHHHHHHhcCcccccchhhhhHHHHHHHHHHH
Q 006500 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQM 513 (643)
Q Consensus 439 v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (643)
|++||+||+|.++.+|+||+||++|.+..|.+++++.+.+ ..++..|.+. ++++....+++..+..+...++.+
T Consensus 384 VdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k-~I~i~~i~i~~~k~~~i~~~l~~l 458 (758)
T KOG0343|consen 384 VDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK-KIPIKEIKIDPEKLTSIRNKLEAL 458 (758)
T ss_pred cceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc-CCCHHhhccCHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999998 6677777765 366666666665555544444443
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-65 Score=480.29 Aligned_cols=370 Identities=32% Similarity=0.526 Sum_probs=343.9
Q ss_pred ccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEE
Q 006500 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (643)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil 202 (643)
...+|++++|+..+++++...||.+|+.+|+.||+.++.|+|+++++..|+|||.+|.+.+++.+.-.. ...++|||
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~---r~tQ~lil 101 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV---RETQALIL 101 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc---ceeeEEEe
Confidence 357899999999999999999999999999999999999999999999999999999999988765432 34679999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCch
Q 006500 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (643)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (643)
+|||+||.|+.+.+..++.+.++.+..+.||.+.......+..+.+++.+|||++++.+... .+.-..++++|+||||.
T Consensus 102 sPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~-~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328|consen 102 SPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR-SLRTRAVKMLVLDEADE 180 (400)
T ss_pred cChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc-cccccceeEEEeccHHH
Confidence 99999999999999999999999999999999988888888899999999999999999875 67788999999999999
Q ss_pred hccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHH
Q 006500 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (643)
Q Consensus 283 l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (643)
|++.||..++..+.+.+|+..|++++|||++.++.+....++..|+.+-+.........+.++++.+. .+..+...|+
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve--~EewKfdtLc 258 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE--KEEWKFDTLC 258 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec--hhhhhHhHHH
Confidence 99999999999999999999999999999999999999999999999988777767777889888775 3455788888
Q ss_pred HHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEE
Q 006500 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (643)
Q Consensus 363 ~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (643)
.+.....-...+|||+|+..+.+|.+.|...++.+..+||+|++++|..++..|++|+.+|||+||+.+||+|+|.|++|
T Consensus 259 dLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslv 338 (400)
T KOG0328|consen 259 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLV 338 (400)
T ss_pred HHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEE
Confidence 88887777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccccch
Q 006500 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498 (643)
Q Consensus 443 I~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~~~~ 498 (643)
||||+|.+.+.|+||+||.||.|++|.++.|+...|...++.|++.++..+.+...
T Consensus 339 iNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 339 INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred EecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999988766665443
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=9e-65 Score=512.38 Aligned_cols=365 Identities=37% Similarity=0.579 Sum_probs=336.4
Q ss_pred CcccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCC------CC
Q 006500 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK------RI 194 (643)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~------~~ 194 (643)
+.+..+|++.+|+..+++.+...||..|+|+|..+||..++++|+|..+.||||||++|++|++-.+...+. ..
T Consensus 241 pnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~ 320 (673)
T KOG0333|consen 241 PNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320 (673)
T ss_pred CccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcc
Confidence 456789999999999999999999999999999999999999999999999999999999999998887663 34
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeE
Q 006500 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274 (643)
Q Consensus 195 ~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~ 274 (643)
.+|.++|++|||+|+.|+.++-.+|+...++++..++||.+...+.-.+..+++|+|+|||+|++.|.+. .+-++++.+
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr-~lvl~qcty 399 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENR-YLVLNQCTY 399 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHH-HHHhccCce
Confidence 5899999999999999999999999999999999999999999988889999999999999999999886 567899999
Q ss_pred EEEeCCchhccCChHHHHHHHHHHCCC-------------------------CceeEEEeeccchhHHHHHHHhcCCCeE
Q 006500 275 LILDEADRLLELGFSAEIHELVRLCPK-------------------------RRQTMLFSATLTEDVDELIKLSLTKPLR 329 (643)
Q Consensus 275 lVvDEah~l~~~g~~~~~~~i~~~~~~-------------------------~~q~i~~SAT~~~~~~~~~~~~~~~p~~ 329 (643)
||+||||+|+++||.+.+..++..+|. -+|+++|||||++.+..+++.+|..|+.
T Consensus 400 vvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~ 479 (673)
T KOG0333|consen 400 VVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVV 479 (673)
T ss_pred EeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeE
Confidence 999999999999999999999998873 1799999999999999999999999999
Q ss_pred EecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHH
Q 006500 330 LSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409 (643)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R 409 (643)
+.+.......+-+.|.+..+. ...+...|..++......++|||+|+++.|+.|++.|...|+++..|||+-+|.+|
T Consensus 480 vtig~~gk~~~rveQ~v~m~~---ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 480 VTIGSAGKPTPRVEQKVEMVS---EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQR 556 (673)
T ss_pred EEeccCCCCccchheEEEEec---chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHH
Confidence 998877766667777666654 34456677778877788899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHh
Q 006500 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (643)
Q Consensus 410 ~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~ 489 (643)
..+|+.|++|..+||||||+++||||||+|.+|||||++++...|+||+|||||+|+.|.+++|+++.+...++.+.+.+
T Consensus 557 e~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 557 ENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987777766543
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-62 Score=527.40 Aligned_cols=367 Identities=37% Similarity=0.574 Sum_probs=326.8
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCC----CCCCeEE
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIRV 199 (643)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~v 199 (643)
..+|++++|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++.++..+. ...++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 468999999999999999999999999999999999999999999999999999999999999876432 1345789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeC
Q 006500 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (643)
Q Consensus 200 Lil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (643)
|||+||++||.|+++.+..++...++++..++||.+...+...+..+++|+|+||++|.+++... .+.+.++++|||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~v~~lViDE 165 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN-HINLGAIQVVVLDE 165 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccccEEEEec
Confidence 99999999999999999999998999999999998888888888888999999999999998764 57899999999999
Q ss_pred CchhccCChHHHHHHHHHHCCC--CceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhH
Q 006500 280 ADRLLELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (643)
Q Consensus 280 ah~l~~~g~~~~~~~i~~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (643)
||+++++||...+..++..++. .+++++||||++..+..+....+..|..+.+.........+.+.+... ....+
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~---~~~~k 242 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP---SNEEK 242 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC---CHHHH
Confidence 9999999999999999999884 567899999999999999988899998877655444444455444332 22345
Q ss_pred HHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCC
Q 006500 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (643)
Q Consensus 358 ~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~ 437 (643)
...+..++......++||||+++..++.+...|...|+++..+||+|++.+|..+++.|++|+++|||||++++||||+|
T Consensus 243 ~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 243 MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 55666666666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCccc
Q 006500 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (643)
Q Consensus 438 ~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~ 494 (643)
+|++|||||+|.++..|+||+|||||+|+.|.+++|+++.+...+..+.+..+..+.
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~ 379 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIP 379 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999889988777665543
No 13
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-62 Score=483.33 Aligned_cols=353 Identities=38% Similarity=0.599 Sum_probs=320.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCC---CCCCeEEEE
Q 006500 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLI 201 (643)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~~~vLi 201 (643)
.+|++++|++.+++++..+||.+||-+|..+||+++.|+|+++.|.||||||.+|+||+++.++.... ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 67999999999999999999999999999999999999999999999999999999999999987543 346788999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCC--ceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeC
Q 006500 202 LTPTRELAVQVHSMIEKIAQFTD--IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (643)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~~--~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (643)
|+||++||.|++.++.++..+++ +++.-+....+.......+...|+|||+||++|+.++.......+..++++||||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999987754 6666677677777777888889999999999999999887556789999999999
Q ss_pred CchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCC-CCCCCceEEEEEEechhhhhHH
Q 006500 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA-KRPSTLTEEVVRIRRMREVNQE 358 (643)
Q Consensus 280 ah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 358 (643)
||-++..||...+..+...+|+..|.+++|||++.++..+.+++|++|+.+...... ..+..+.|+.+.+. ..++.
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs---e~DKf 255 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS---EEDKF 255 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec---cchhH
Confidence 999999999999999999999999999999999999999999999999998775443 34577888888875 45666
Q ss_pred HHHHHHhh-ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEeccc--------
Q 006500 359 AVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-------- 429 (643)
Q Consensus 359 ~~l~~~~~-~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~-------- 429 (643)
.++..+++ +...+++|||+||.+.+.+|.-+|...|++.+.|+|.|+...|..++++|+.|-+++|||||.
T Consensus 256 lllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~e 335 (569)
T KOG0346|consen 256 LLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLE 335 (569)
T ss_pred HHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhh
Confidence 66666554 455789999999999999999999999999999999999999999999999999999999981
Q ss_pred ---------------------------ccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHH
Q 006500 430 ---------------------------AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480 (643)
Q Consensus 430 ---------------------------~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~ 480 (643)
.+||||+..|.+|||||+|.++..|+||+|||||+|++|.+++|+++.+..
T Consensus 336 ee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 336 EEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred ccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 369999999999999999999999999999999999999999999998876
No 14
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.4e-60 Score=529.61 Aligned_cols=371 Identities=38% Similarity=0.624 Sum_probs=333.1
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
..+|.+|+|++.++++|..+||..|+|+|.++||.++.|+|+|+.||||||||++|++|+++.+... ...+++|||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~---~~~~~~LIL~ 81 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE---LKAPQILVLA 81 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc---cCCCeEEEEe
Confidence 3469999999999999999999999999999999999999999999999999999999999988543 2356899999
Q ss_pred CcHHHHHHHHHHHHHHhhc-CCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCch
Q 006500 204 PTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~-~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (643)
||++||.|+++.+..|... .++.+..++||.+...+...+..+++|||+||++|++++... .+.++++.+|||||||+
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~-~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG-TLDLSKLSGLVLDEADE 160 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcchhhceEEEeccHHH
Confidence 9999999999999998765 479999999999888888888889999999999999999874 57799999999999999
Q ss_pred hccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHH
Q 006500 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (643)
Q Consensus 283 l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (643)
|++++|...+..++..+|..+|+++||||+++.+..+...++..|..+.+.........+.+.++.+.. ..+...+.
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~---~~k~~~L~ 237 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG---MRKNEALV 237 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech---hhHHHHHH
Confidence 999999999999999999999999999999999999999999999887776554444556666655532 33555666
Q ss_pred HHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEE
Q 006500 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (643)
Q Consensus 363 ~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (643)
.++......++||||+|+..+..|+..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++|
T Consensus 238 ~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 66666666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccccchhhh
Q 006500 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQ 501 (643)
Q Consensus 443 I~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~ 501 (643)
||||+|.++..|+||+|||||+|+.|.+++|+.+.+...++.|.+.++..+....++..
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~ 376 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 376 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcH
Confidence 99999999999999999999999999999999999999999999988888766555443
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.3e-61 Score=521.97 Aligned_cols=365 Identities=39% Similarity=0.624 Sum_probs=326.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCC---CCCCeEEEEE
Q 006500 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLIL 202 (643)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~~~vLil 202 (643)
+|++|+|++.++++|..+||..||++|.++||.++.|+|+|+++|||||||++|++|+++.+..... ...++++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 6889999999999999999999999999999999999999999999999999999999999875432 1234689999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCch
Q 006500 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (643)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (643)
+||++||.|+.+.+..++...++.+..++|+.+...+...+...++|+|+||++|++++... .+.++++++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~-~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN-AVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC-CcccccceEEEeecHHH
Confidence 99999999999999999988899999999999988888888889999999999999988764 56789999999999999
Q ss_pred hccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHH
Q 006500 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (643)
Q Consensus 283 l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (643)
|++++|...+..++..++..+|+++||||+++.+..+...++.+|..+.+.........+.+.+..+. ...+...+.
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~k~~~l~ 237 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD---KKRKRELLS 237 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC---HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887766544444445555555443 233445566
Q ss_pred HHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEE
Q 006500 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (643)
Q Consensus 363 ~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (643)
.++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++|
T Consensus 238 ~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 238 QMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 66666666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCccc
Q 006500 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (643)
Q Consensus 443 I~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~ 494 (643)
|||++|.++.+|+||+|||||+|..|.+++|+...+...++.+.+.++..+.
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999887766553
No 16
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.4e-61 Score=528.64 Aligned_cols=365 Identities=35% Similarity=0.531 Sum_probs=319.7
Q ss_pred CCcccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCC--CCCCe
Q 006500 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAI 197 (643)
Q Consensus 120 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~ 197 (643)
.+.+..+|++++|++.++++|..+||..|||+|.++||.++.|+|+|+++|||||||++|++|++.++...+. ...++
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 3455678999999999999999999999999999999999999999999999999999999999998875432 23467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEE
Q 006500 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (643)
Q Consensus 198 ~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVv 277 (643)
.+|||+|||+||.|+.+.+..|+...++++.+++||.....+...+..+++|+|+||++|++++... ...+.++.+|||
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~-~~~l~~v~~lVi 283 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN-VTNLRRVTYLVL 283 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC-CCChhhCcEEEe
Confidence 8999999999999999999999988899999999999888888888889999999999999999874 467899999999
Q ss_pred eCCchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcC-CCeEEecCCCC-CCCCCceEEEEEEechhhh
Q 006500 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT-KPLRLSADPSA-KRPSTLTEEVVRIRRMREV 355 (643)
Q Consensus 278 DEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~-~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 355 (643)
||||+|++++|...+..++..+++.+|+++||||++..+..+...++. .|+.+.+.... .....+.+.+..+.. .
T Consensus 284 DEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~---~ 360 (545)
T PTZ00110 284 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE---H 360 (545)
T ss_pred ehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec---h
Confidence 999999999999999999999999999999999999999998887775 57666554322 222345555544432 2
Q ss_pred hHHHHHHHHhhcc--CCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEeccccccc
Q 006500 356 NQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (643)
Q Consensus 356 ~~~~~l~~~~~~~--~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (643)
.+...+..++... .+.++||||+++..++.|+..|...++.+..+||++++.+|..+++.|++|+.+|||||++++||
T Consensus 361 ~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rG 440 (545)
T PTZ00110 361 EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRG 440 (545)
T ss_pred hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcC
Confidence 3344444444432 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHH
Q 006500 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (643)
Q Consensus 434 lDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~ 488 (643)
||+|+|++|||||+|.++..|+||+|||||+|..|.|++|+++.+...+..+.+.
T Consensus 441 IDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 441 LDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988777766554
No 17
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-63 Score=474.59 Aligned_cols=368 Identities=33% Similarity=0.531 Sum_probs=340.2
Q ss_pred CCcccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEE
Q 006500 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199 (643)
Q Consensus 120 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~v 199 (643)
.....+.|+++.|.+.++..+...||.+|+|+|.++||.++.|+|+++.|..|+|||.+|++|+|+.+.... ...++
T Consensus 80 t~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~---~~IQ~ 156 (459)
T KOG0326|consen 80 TATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK---NVIQA 156 (459)
T ss_pred ccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc---cceeE
Confidence 344567899999999999999999999999999999999999999999999999999999999999986543 34578
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeC
Q 006500 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (643)
Q Consensus 200 Lil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (643)
+|++|||+||.|+...++.+++..++.+.+.+||.+.......+....+++|+||||+++++... -..++...++|+||
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg-Va~ls~c~~lV~DE 235 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG-VADLSDCVILVMDE 235 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc-cccchhceEEEech
Confidence 99999999999999999999999999999999999988888788889999999999999998875 45789999999999
Q ss_pred CchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHH
Q 006500 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359 (643)
Q Consensus 280 ah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (643)
||.|++..|...+..++..+|+.+|++++|||+|-.+..+...++.+|..+..-.+- ....++|++..+. +..+..
T Consensus 236 ADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL-tl~GvtQyYafV~---e~qKvh 311 (459)
T KOG0326|consen 236 ADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL-TLKGVTQYYAFVE---ERQKVH 311 (459)
T ss_pred hhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhh-hhcchhhheeeec---hhhhhh
Confidence 999999999999999999999999999999999999999999999999998875443 4557788777664 445667
Q ss_pred HHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCc
Q 006500 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439 (643)
Q Consensus 360 ~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v 439 (643)
.|..++.+..-...||||||...++.|++...+.|++|.++|+.|-|..|.+++..|++|.++.|||||++.||||++.|
T Consensus 312 CLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqav 391 (459)
T KOG0326|consen 312 CLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAV 391 (459)
T ss_pred hHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhccccccee
Confidence 77777777777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccc
Q 006500 440 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (643)
Q Consensus 440 ~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~ 495 (643)
++|||||+|+++++|+||+||.||.|..|.++.|++..|+..+..|++.+|..++.
T Consensus 392 NvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~p 447 (459)
T KOG0326|consen 392 NVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKP 447 (459)
T ss_pred eEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999987764
No 18
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-61 Score=489.79 Aligned_cols=373 Identities=35% Similarity=0.526 Sum_probs=320.9
Q ss_pred CCCCCcccCCcccCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCC--
Q 006500 117 ADGASFHANSFMELNLSRPLLRACE-ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-- 193 (643)
Q Consensus 117 ~~~~~~~~~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-- 193 (643)
....++....|..|||++.+...|. .|++..||.+|+++||.+++|+|++|.++||||||++|++|+++.+.....+
T Consensus 128 v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~ 207 (708)
T KOG0348|consen 128 VSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ 207 (708)
T ss_pred ccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc
Confidence 3445677788999999999999995 4899999999999999999999999999999999999999999999886643
Q ss_pred -CCCeEEEEEcCcHHHHHHHHHHHHHHhhc-CCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCC
Q 006500 194 -IPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (643)
Q Consensus 194 -~~~~~vLil~Ptr~La~Q~~~~~~~l~~~-~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~ 271 (643)
..|+-+|||+|||+||.|+|+.+.++... +.+--+.+.||.........++.+.+|+|+|||||++||.+...+.++.
T Consensus 208 Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~ 287 (708)
T KOG0348|consen 208 RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSR 287 (708)
T ss_pred ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeee
Confidence 45788999999999999999999998764 4566688899999988999999999999999999999999999999999
Q ss_pred eeEEEEeCCchhccCChHHHHHHHHHHC-------------CCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCC---
Q 006500 272 LAVLILDEADRLLELGFSAEIHELVRLC-------------PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPS--- 335 (643)
Q Consensus 272 i~~lVvDEah~l~~~g~~~~~~~i~~~~-------------~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~--- 335 (643)
+.+||+||||+|+++||...+..|++.+ |...|.+++|||++..+..+....+.+|+.+..+..
T Consensus 288 LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 288 LRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQ 367 (708)
T ss_pred eeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhh
Confidence 9999999999999999999999998776 234789999999999999999999999998873211
Q ss_pred ----------------------CCCCCCceEEEEEEechhhhh-HHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhh
Q 006500 336 ----------------------AKRPSTLTEEVVRIRRMREVN-QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL 392 (643)
Q Consensus 336 ----------------------~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~ 392 (643)
...|..+.+.+..+++.-... -...|...+......++|||+.+.+.++.-...|..
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 123444555555554422111 122333444555567999999999999877776642
Q ss_pred ----------------------cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCC
Q 006500 393 ----------------------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450 (643)
Q Consensus 393 ----------------------~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s 450 (643)
.+.++..|||+|+|.+|..+++.|......||+|||+++||||+|.|++||.||+|.+
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s 527 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFS 527 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCC
Confidence 2457899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHh
Q 006500 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (643)
Q Consensus 451 ~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~ 489 (643)
+.+|+||+|||+|+|.+|.+++|+.|.+..++..+....
T Consensus 528 ~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 528 TADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred HHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 999999999999999999999999999999888877653
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.2e-61 Score=528.37 Aligned_cols=368 Identities=37% Similarity=0.577 Sum_probs=327.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCC----CCCCeEEE
Q 006500 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIRVL 200 (643)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~vL 200 (643)
.+|++|+|++.++++|..+||..|||+|.++||.++.|+|+++++|||||||++|++|++++++.... ....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 46999999999999999999999999999999999999999999999999999999999999875431 12246899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCC
Q 006500 201 ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (643)
Q Consensus 201 il~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (643)
||+||++||.|+++.+..|....++++..++|+.....+...+..+++|+|+||++|++++.....+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999999999999999888999999999999888888888889999999999999998755567889999999999
Q ss_pred chhccCChHHHHHHHHHHCCC--CceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHH
Q 006500 281 DRLLELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (643)
Q Consensus 281 h~l~~~g~~~~~~~i~~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (643)
|+|++++|...+..++..++. .+|+++||||++..+..+...++..|..+.+.........+.+.+... ....+.
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~---~~~~k~ 245 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP---ADEEKQ 245 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec---CHHHHH
Confidence 999999999999999999986 789999999999999999998888887766544433344455554433 233455
Q ss_pred HHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCC
Q 006500 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (643)
Q Consensus 359 ~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~ 438 (643)
..+..++....+.++||||+|+..++.|+..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+
T Consensus 246 ~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 246 TLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 56666776666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccc
Q 006500 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (643)
Q Consensus 439 v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~ 495 (643)
|++|||||+|.++..|+||+|||||.|..|.+++|+++.+...+..|.+.++.++..
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~ 382 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPV 382 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCc
Confidence 999999999999999999999999999999999999999988888888877665543
No 20
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.1e-60 Score=520.89 Aligned_cols=364 Identities=37% Similarity=0.584 Sum_probs=329.1
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
..+|++++|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++++.... ..+++|||+
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~---~~~~~lil~ 79 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR---FRVQALVLC 79 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc---CCceEEEEe
Confidence 35799999999999999999999999999999999999999999999999999999999999985432 245799999
Q ss_pred CcHHHHHHHHHHHHHHhhcC-CceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCch
Q 006500 204 PTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~-~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (643)
||++||.|+.+.++.++... ++++..++||.+...+...+..+++|+|+||++|.+++... .+.+.++++|||||||+
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~-~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG-TLDLDALNTLVLDEADR 158 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC-CccHHHCCEEEEECHHH
Confidence 99999999999999987653 78999999999988888888889999999999999999874 57789999999999999
Q ss_pred hccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHH
Q 006500 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (643)
Q Consensus 283 l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (643)
|+++||...+..++..+|..+|+++||||+++.+..+...++..|..+.+.... ....+.+.++.+... .+...+.
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~---~k~~~l~ 234 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPD---ERLPALQ 234 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcH---HHHHHHH
Confidence 999999999999999999999999999999999999999999999888775544 334466666655432 3566677
Q ss_pred HHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEE
Q 006500 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (643)
Q Consensus 363 ~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (643)
.++....+.++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++|
T Consensus 235 ~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 235 RLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 77776677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccc
Q 006500 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (643)
Q Consensus 443 I~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~ 495 (643)
|+||+|.++..|+||+|||||+|+.|.+++|+++.+...+..+.+..+..+..
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 99999999999999999999999999999999999999999998877765554
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.3e-59 Score=509.47 Aligned_cols=366 Identities=40% Similarity=0.627 Sum_probs=326.3
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCC-CCCeEEEEEcC
Q 006500 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLILTP 204 (643)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~vLil~P 204 (643)
+|++++|++.++++|..+||..|+++|.++||.++.|+|+++++|||+|||++|++|+++++...+.. ..++++|||+|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 58899999999999999999999999999999999999999999999999999999999998753321 23468999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc
Q 006500 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (643)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~ 284 (643)
|++||.|+++.+..++...++++..++||.....+...+..+++|+|+||++|++++... .+.+.++++|||||||+|+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~-~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE-NFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CcCcccCCEEEEECHHHHh
Confidence 999999999999999999999999999999988888888888999999999999998774 5778999999999999999
Q ss_pred cCChHHHHHHHHHHCCCCceeEEEeeccch-hHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHH
Q 006500 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (643)
Q Consensus 285 ~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (643)
+++|...+..+...++...|+++||||++. .+..+....+..|+.+...........+.+.+..... ...+...+..
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~--~~~k~~~l~~ 238 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADD--LEHKTALLCH 238 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCC--HHHHHHHHHH
Confidence 999999999999999999999999999985 5778888888889888776655555556665554432 2345566777
Q ss_pred HhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEE
Q 006500 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (643)
Q Consensus 364 ~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI 443 (643)
++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||
T Consensus 239 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 239 LLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred HHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 77665678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCccc
Q 006500 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (643)
Q Consensus 444 ~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~ 494 (643)
|||+|.++..|+||+|||||+|..|.+++|+...+...+..+.+.+...+.
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999998888888765544443
No 22
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.1e-59 Score=514.75 Aligned_cols=364 Identities=31% Similarity=0.504 Sum_probs=317.9
Q ss_pred CcccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCC----CCCCC
Q 006500 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP----KRIPA 196 (643)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~----~~~~~ 196 (643)
+.+..+|.+++|++.++++|...||..|||+|.++||.++.|+|+++++|||||||++|++|++.++.... ....+
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~ 196 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRN 196 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999886421 12246
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEE
Q 006500 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (643)
Q Consensus 197 ~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lV 276 (643)
+++|||+|||+||.|+.+.+..+....++++..++||.....+...+..+++|+|+||++|++++... .+.+.++.+||
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lV 275 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLV 275 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccchheeEEE
Confidence 78999999999999999999999888889999999998887777778888999999999999998875 67899999999
Q ss_pred EeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhh
Q 006500 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (643)
Q Consensus 277 vDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (643)
|||||+|+++||...+..++..++ .+|+++||||+++.+..+...++.+++.+...........+.+.+..+... .
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~---~ 351 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETK---Q 351 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccch---h
Confidence 999999999999999999998885 589999999999999999999998888887755544444455555554332 2
Q ss_pred HHHHHHHHhhc--cCCceEEEEeCCHHHHHHHHHHHhh-cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEeccccccc
Q 006500 357 QEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (643)
Q Consensus 357 ~~~~l~~~~~~--~~~~~~LIF~~s~~~~~~l~~~L~~-~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (643)
+...+..++.. ....++||||+++..++.+...|.. .++.+..+||++++.+|..+++.|++|+.+|||||++++||
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rG 431 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRG 431 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhcc
Confidence 33444444432 2346899999999999999999975 68999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHh
Q 006500 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (643)
Q Consensus 434 lDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~ 489 (643)
||+|+|++|||||+|.++..|+||+|||||.|..|.+++|+++.+...+..+.+.+
T Consensus 432 iDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l 487 (518)
T PLN00206 432 VDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALL 487 (518)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887777766543
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-60 Score=465.04 Aligned_cols=362 Identities=35% Similarity=0.557 Sum_probs=318.8
Q ss_pred CcccCCccc-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCC---CCCC
Q 006500 121 SFHANSFME-LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPA 196 (643)
Q Consensus 121 ~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~ 196 (643)
+.+..+|++ ++..+++++.+...||.+|||||.+++|.+|+|.|++..|.||+|||++|++|.+-++...+. ...+
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 334566665 677899999999999999999999999999999999999999999999999999888876553 3467
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEE
Q 006500 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (643)
Q Consensus 197 ~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lV 276 (643)
+.+|+++|||+||.|+.-++.+++ +.+....+++||.+...+...++.+.+|+|+||++|.++..+. .++|.++.+||
T Consensus 295 p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n-~i~l~siTYlV 372 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN-VINLASITYLV 372 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC-eeeeeeeEEEE
Confidence 889999999999999988888764 5688899999999999999999999999999999999987765 68899999999
Q ss_pred EeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCC-CCCceEEEEEEechhhh
Q 006500 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR-PSTLTEEVVRIRRMREV 355 (643)
Q Consensus 277 vDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 355 (643)
+||||+|+++||...+.+|+-.+.+.+|+++.|||.|+.+..+...++..|+.+.+...... ...+.|.++ +. ...
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~-v~--~d~ 449 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNII-VT--TDS 449 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEE-ec--ccH
Confidence 99999999999999999999999999999999999999999999999999988776543322 233445442 22 233
Q ss_pred hHHHHHHHHhh-ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccC
Q 006500 356 NQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (643)
Q Consensus 356 ~~~~~l~~~~~-~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 434 (643)
.+......+.. .....++||||..+-.++.|..-|...|+....|||+-.|.+|..+++.|++|.++||||||+++|||
T Consensus 450 ~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGl 529 (629)
T KOG0336|consen 450 EKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGL 529 (629)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCC
Confidence 34444444433 44568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHH
Q 006500 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 435 Di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~ 487 (643)
|++++.||+|||+|.|...|+||+||+||+|++|.+++|++.+|..+...+.+
T Consensus 530 Dv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 530 DVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred CchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777654
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-59 Score=482.56 Aligned_cols=363 Identities=37% Similarity=0.566 Sum_probs=323.4
Q ss_pred CcccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCC-------
Q 006500 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR------- 193 (643)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~------- 193 (643)
+.+..+|.+-.+...+...+...||..|||+|+.+||.+..|+|+++||+||||||.+|++|++.+++.....
T Consensus 70 p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~ 149 (482)
T KOG0335|consen 70 PPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGG 149 (482)
T ss_pred CCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCC
Confidence 3344577777889999999999999999999999999999999999999999999999999999999876431
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCee
Q 006500 194 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (643)
Q Consensus 194 ~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~ 273 (643)
...|++||++|||+||.|++++..++....+++++..||+.+...+...+..++||+|+|||+|.+.+... .+.|.+++
T Consensus 150 ~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g-~i~l~~~k 228 (482)
T KOG0335|consen 150 GVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG-KISLDNCK 228 (482)
T ss_pred CCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc-eeehhhCc
Confidence 12488999999999999999999999998999999999999988888889999999999999999998875 68899999
Q ss_pred EEEEeCCchhcc-CChHHHHHHHHHHCCC----CceeEEEeeccchhHHHHHHHhcCC-CeEEecCCCCCCCCCceEEEE
Q 006500 274 VLILDEADRLLE-LGFSAEIHELVRLCPK----RRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTEEVV 347 (643)
Q Consensus 274 ~lVvDEah~l~~-~g~~~~~~~i~~~~~~----~~q~i~~SAT~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~ 347 (643)
++||||||+|++ +||.+.+..|+..... .+|+++||||.+..+..++..++.. .+.+.+........++.|.+.
T Consensus 229 ~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~ 308 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKIL 308 (482)
T ss_pred EEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEee
Confidence 999999999998 9999999999988754 6899999999999999998888876 666666666667788999888
Q ss_pred EEechhhhhHHHHHHHHhhccC----Cc-----eEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhc
Q 006500 348 RIRRMREVNQEAVLLSLCSKTF----TS-----KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418 (643)
Q Consensus 348 ~~~~~~~~~~~~~l~~~~~~~~----~~-----~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~ 418 (643)
++.... +...|+.++.... .+ .++|||.+++.+..+..+|...++++..+||..++.+|.+++..|++
T Consensus 309 ~V~~~~---kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 309 FVNEME---KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN 385 (482)
T ss_pred eecchh---hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc
Confidence 886543 4444454444322 23 79999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHH
Q 006500 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 419 g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~ 487 (643)
|...+||||++++||||||+|+||||||+|.+..+|+||+|||||.|+.|.+++|++..+....+.+.+
T Consensus 386 g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~ 454 (482)
T KOG0335|consen 386 GKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVE 454 (482)
T ss_pred CCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999777666665544
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-57 Score=498.28 Aligned_cols=370 Identities=36% Similarity=0.611 Sum_probs=325.5
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCC----CCCeEE
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR----IPAIRV 199 (643)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~----~~~~~v 199 (643)
...|.+++|++.++++|..+||..|+++|.++|+.++.|+|+|+++|||||||++|++|+++.+...+.. ...+++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 4578889999999999999999999999999999999999999999999999999999999998865422 125689
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhc-CCCcEEEECchhHHHHHhccCccCCCCeeEEEEe
Q 006500 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (643)
Q Consensus 200 Lil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~-~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvD 278 (643)
|||+||++||.|+++.+..+....++.+..++||.+...+...+. ..++|+|+||++|+.++... ...++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~-~~~l~~l~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG-EVHLDMVEVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CcccccCceEEec
Confidence 999999999999999999999888999999999987776655554 56899999999999988764 5678999999999
Q ss_pred CCchhccCChHHHHHHHHHHCCC--CceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhh
Q 006500 279 EADRLLELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (643)
Q Consensus 279 Eah~l~~~g~~~~~~~i~~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (643)
|||++++++|...+..++..++. .+|++++|||++.++..+...++..|..+.+.........+.+.+..+. ...
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~ 321 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVA---GSD 321 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEec---chh
Confidence 99999999999999999998865 5799999999999999999999888887766555444444555554443 233
Q ss_pred HHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCC
Q 006500 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (643)
Q Consensus 357 ~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi 436 (643)
+...+..++......++||||+++..++.+..+|...++.+..+||++++.+|..+++.|++|+.+|||||+++++||||
T Consensus 322 k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 322 KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 45566666666666799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccccc
Q 006500 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497 (643)
Q Consensus 437 ~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~~~ 497 (643)
|++++||+|++|.|+.+|+||+||+||.|+.|.+++|+++.|...+..+.+.++..+....
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~ 462 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEM 462 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccC
Confidence 9999999999999999999999999999999999999999999889999888887765333
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.6e-60 Score=464.65 Aligned_cols=358 Identities=37% Similarity=0.610 Sum_probs=317.5
Q ss_pred CCCCCCcccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCC----
Q 006500 116 PADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP---- 191 (643)
Q Consensus 116 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~---- 191 (643)
..+..+++..+|.++.++..+++.|+..|+..|||+|.+.||.+++|+|.|..|-||||||++|.+|++-..+...
T Consensus 161 eGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lP 240 (610)
T KOG0341|consen 161 EGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLP 240 (610)
T ss_pred eCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCc
Confidence 3456677889999999999999999999999999999999999999999999999999999999999987655422
Q ss_pred -CCCCCeEEEEEcCcHHHHHHHHHHHHHHhh------cCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhcc
Q 006500 192 -KRIPAIRVLILTPTRELAVQVHSMIEKIAQ------FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS 264 (643)
Q Consensus 192 -~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~------~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~ 264 (643)
.+..+|-.||+||+|+||.|.++.+..++. .+.++.+++.||.+...+...++.+.+|+|+|||||.+.|...
T Consensus 241 f~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK 320 (610)
T KOG0341|consen 241 FARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK 320 (610)
T ss_pred cccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh
Confidence 234578899999999999999999988865 3567899999999999999999999999999999999999875
Q ss_pred CccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceE
Q 006500 265 MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTE 344 (643)
Q Consensus 265 ~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 344 (643)
..+|.-..++.+||||+|+++||...+..++.++...+|+++||||||..+..+++..+.+|+.+.+.......-++.|
T Consensus 321 -~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQ 399 (610)
T KOG0341|consen 321 -IMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQ 399 (610)
T ss_pred -hccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHH
Confidence 6788889999999999999999999999999999999999999999999999999999999999988655544434443
Q ss_pred EEEEEechhhhhHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEE
Q 006500 345 EVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424 (643)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vL 424 (643)
.+-. .....+.-+++..+.+. ..++||||..+..++.+..||-..|+.+..|||+-+|++|..+++.|+.|+-+||
T Consensus 400 evEy---VkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVL 475 (610)
T KOG0341|consen 400 EVEY---VKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVL 475 (610)
T ss_pred HHHH---HHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceE
Confidence 3222 22333444455444443 5699999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCc
Q 006500 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (643)
Q Consensus 425 vaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d 478 (643)
||||+++.|+|+|++.||||||+|.....|+||+|||||.|++|.+.+|+++..
T Consensus 476 VATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 476 VATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred EEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999864
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-58 Score=462.24 Aligned_cols=365 Identities=36% Similarity=0.556 Sum_probs=332.8
Q ss_pred CcccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCC--CCCCeE
Q 006500 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIR 198 (643)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~~ 198 (643)
+.+..+|++++++..|..++...-|.+|||+|..++|.++.|+|++..|.||||||.+|+.|++-++...+. ...+|-
T Consensus 219 ~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi 298 (731)
T KOG0339|consen 219 PRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPI 298 (731)
T ss_pred CCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCe
Confidence 345788999999999999999999999999999999999999999999999999999999999999987654 245788
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEe
Q 006500 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (643)
Q Consensus 199 vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvD 278 (643)
.||++|||+||.|++.++++|++..+++++++|||.+...|...|+.++.|||||||||++++.-. ..++.++.+||||
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK-atn~~rvS~LV~D 377 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK-ATNLSRVSYLVLD 377 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh-cccceeeeEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999998764 6789999999999
Q ss_pred CCchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHH
Q 006500 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (643)
Q Consensus 279 Eah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (643)
||++|.++||...+..|..++.+.+|+|+||||+...+..+.+.++..|+.+...........++|.+..+... ..+.
T Consensus 378 EadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~--~~Kl 455 (731)
T KOG0339|consen 378 EADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE--EKKL 455 (731)
T ss_pred chhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc--HHHH
Confidence 99999999999999999999999999999999999999999999999999887766666667788877666543 2233
Q ss_pred H-HHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCC
Q 006500 359 A-VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (643)
Q Consensus 359 ~-~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~ 437 (643)
. ++..+......+++|||+.-+..++.+...|...++++..+||++.|.+|.+++..|+.+...|||+||+++||+||+
T Consensus 456 ~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 456 NWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 3 334444455567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHH
Q 006500 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (643)
Q Consensus 438 ~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~ 488 (643)
.+.+|||||+-.+...|.||+||+||+|.+|.+++|+++.|..+.-.+.+.
T Consensus 536 ~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnn 586 (731)
T KOG0339|consen 536 SIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNN 586 (731)
T ss_pred ccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHH
Confidence 999999999999999999999999999999999999999998776665554
No 28
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-56 Score=451.56 Aligned_cols=363 Identities=35% Similarity=0.548 Sum_probs=310.1
Q ss_pred cCCcccCCCCHHH----------HHHHHHCCCCCCCHHHHHHHHHHhc---------CCCeEEEcCCCchhHHHhHHhHH
Q 006500 124 ANSFMELNLSRPL----------LRACEALGYSKPTPIQAACIPLALT---------GRDICGSAITGSGKTAAFALPTL 184 (643)
Q Consensus 124 ~~~f~~l~l~~~l----------~~~l~~~g~~~~~~~Q~~~i~~~l~---------g~d~l~~a~TGsGKT~~~~l~~l 184 (643)
...|+.++++..+ ..++..+++++.+|+|..++|+++. ++|++|.||||||||++|.||++
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 3446666766543 3448889999999999999999964 58999999999999999999999
Q ss_pred HHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCC-C----cEEEECchhHHH
Q 006500 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM-P----DIVVATPGRMID 259 (643)
Q Consensus 185 ~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~-~----~Ivv~Tp~~L~~ 259 (643)
+.+..++- +..++|||+||++|+.|+++.|..|+...++.|+.+.|..+.......+.+. + ||+|+|||||++
T Consensus 206 Q~L~~R~v--~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVD 283 (620)
T KOG0350|consen 206 QLLSSRPV--KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVD 283 (620)
T ss_pred HHHccCCc--cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHH
Confidence 99987754 4578999999999999999999999999999999999999888777666553 3 899999999999
Q ss_pred HHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCC----------------------------------CCcee
Q 006500 260 HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP----------------------------------KRRQT 305 (643)
Q Consensus 260 ~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~----------------------------------~~~q~ 305 (643)
||.+...+.|.+++++||||||+|++..|..++-.++..+. ++.+.
T Consensus 284 Hl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~k 363 (620)
T KOG0350|consen 284 HLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWK 363 (620)
T ss_pred hccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHh
Confidence 99998899999999999999999999888888877664432 22357
Q ss_pred EEEeeccchhHHHHHHHhcCCCeEEecC----CCCCCCCCceEEEEEEechhhhhHHHHHHHHhhccCCceEEEEeCCHH
Q 006500 306 MLFSATLTEDVDELIKLSLTKPLRLSAD----PSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQ 381 (643)
Q Consensus 306 i~~SAT~~~~~~~~~~~~~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~ 381 (643)
+++|||++.+-..+..+.++.|....+. .....|..+.+..+.+. ...+...+..++......++|+|+++..
T Consensus 364 L~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~---~~~kpl~~~~lI~~~k~~r~lcf~~S~~ 440 (620)
T KOG0350|consen 364 LVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTE---PKFKPLAVYALITSNKLNRTLCFVNSVS 440 (620)
T ss_pred hhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecc---cccchHhHHHHHHHhhcceEEEEecchH
Confidence 8999999999999999999998554443 33445666666655543 2345666777777777889999999999
Q ss_pred HHHHHHHHHh----hcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHH
Q 006500 382 AAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHR 457 (643)
Q Consensus 382 ~~~~l~~~L~----~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr 457 (643)
.+.++...|+ ..++++..+.|.++...|...+++|..|.++||||||+++||||+.+|+.|||||+|.+...|+||
T Consensus 441 sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR 520 (620)
T KOG0350|consen 441 SANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHR 520 (620)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHh
Confidence 9999999887 346788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCccEEEEEeccCcHHHHHHHHHHhcC
Q 006500 458 VGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS 491 (643)
Q Consensus 458 ~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~ 491 (643)
+|||||+|+.|.|++++...+...+..+.+..+.
T Consensus 521 ~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 521 AGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred hcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 9999999999999999999988777777666554
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-55 Score=474.61 Aligned_cols=366 Identities=33% Similarity=0.530 Sum_probs=322.0
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
..+|.++++++.+.++|..+||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+... ..++++|||+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---~~~~~~lil~ 103 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD---LNACQALILA 103 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC---CCCceEEEEC
Confidence 4679999999999999999999999999999999999999999999999999999999999887532 2356799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchh
Q 006500 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (643)
||++|+.|+.+.+..++...++.+..++|+.........+..+++|+|+||++|.+.+... ...+.++++|||||||++
T Consensus 104 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 104 PTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR-HLRVDDLKLFILDEADEM 182 (401)
T ss_pred CCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC-CcccccccEEEEecHHHH
Confidence 9999999999999999888888888899998877777777788999999999999988764 467899999999999999
Q ss_pred ccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHH
Q 006500 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (643)
Q Consensus 284 ~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (643)
++++|...+..++..++...|++++|||+++.+..+...++..|..+.+.........+.+.+..+.. ...+...+..
T Consensus 183 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 260 (401)
T PTZ00424 183 LSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEK--EEWKFDTLCD 260 (401)
T ss_pred HhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecCh--HHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888776554433334445555444432 2233444555
Q ss_pred HhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEE
Q 006500 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (643)
Q Consensus 364 ~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI 443 (643)
++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||
T Consensus 261 ~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI 340 (401)
T PTZ00424 261 LYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 340 (401)
T ss_pred HHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE
Confidence 55555567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccc
Q 006500 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (643)
Q Consensus 444 ~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~ 495 (643)
+|++|.+...|+||+||+||.|+.|.|++|+++.+...++.+.+.....+..
T Consensus 341 ~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~ 392 (401)
T PTZ00424 341 NYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEE 392 (401)
T ss_pred EECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccc
Confidence 9999999999999999999999999999999999999999998887665554
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-56 Score=434.75 Aligned_cols=372 Identities=31% Similarity=0.492 Sum_probs=329.6
Q ss_pred CCCCCcccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCC
Q 006500 117 ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRI 194 (643)
Q Consensus 117 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~ 194 (643)
.+...++..+|++|+|+|++++++..|+|.+|+.||..++|.++.. +++|.++..|+|||.+|.|.+|.++.-. .
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---~ 158 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---V 158 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc---c
Confidence 3445678899999999999999999999999999999999999996 7999999999999999999999887543 3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeE
Q 006500 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274 (643)
Q Consensus 195 ~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~ 274 (643)
..|.+++|+|||+||.|+.+.+.+.+++.++++.+...+.... +.-.-...|+|+|||.+++++..-..+.+..+++
T Consensus 159 ~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~---rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikv 235 (477)
T KOG0332|consen 159 VVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK---RGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKV 235 (477)
T ss_pred cCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc---cCCcchhheeeCCCccHHHHHHHHHhhChhhceE
Confidence 3567999999999999999999999999988888887775221 1111235899999999999998855788999999
Q ss_pred EEEeCCchhcc-CChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechh
Q 006500 275 LILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353 (643)
Q Consensus 275 lVvDEah~l~~-~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (643)
+|+||||.|++ .||.+.-..|.+.+|+..|+++||||....+..+......++..+.+........++.|.++.|. .
T Consensus 236 fVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~--~ 313 (477)
T KOG0332|consen 236 FVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCA--C 313 (477)
T ss_pred EEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeecc--c
Confidence 99999999995 68999999999999999999999999999999999999999988887777777778888888776 4
Q ss_pred hhhHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEeccccccc
Q 006500 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (643)
Q Consensus 354 ~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (643)
...+...+..+.....-+..||||.|+..+.+|+..|...|..+..+||+|...+|..++.+|+.|..+|||+|++++||
T Consensus 314 ~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARG 393 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARG 393 (477)
T ss_pred hhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcc
Confidence 56678888887776666889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEecCCCC------ChhHHHHHHhhcccCCCccEEEEEeccC-cHHHHHHHHHHhcCccccc
Q 006500 434 LDIIGVQTVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKSR 496 (643)
Q Consensus 434 lDi~~v~~VI~~d~p~------s~~~y~Qr~GRagR~g~~g~~~~l~~~~-d~~~l~~i~~~~~~~~~~~ 496 (643)
||++.|++|||||+|. +++.|+||+|||||.|+.|.++.|+... ...++..|.+.++..+..+
T Consensus 394 iDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~ 463 (477)
T KOG0332|consen 394 IDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRL 463 (477)
T ss_pred cccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceec
Confidence 9999999999999996 7889999999999999999999999765 5677888998887666543
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-56 Score=440.62 Aligned_cols=366 Identities=39% Similarity=0.580 Sum_probs=336.5
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
..+|..+||+..+++++...||..|||+|++.||.++.++|++..+.||||||.+|++|+++++.... ..+.++||+.
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--~~g~Ralils 97 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--QTGLRALILS 97 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--ccccceeecc
Confidence 46799999999999999999999999999999999999999999999999999999999999998765 4678899999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchh
Q 006500 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (643)
|||+|+.|+.+.++.+++++++++.+++||.+...+...+..++|||++||++++...... .+.|+.++|||+||||+|
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sveyVVfdEadrl 176 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVEYVVFDEADRL 176 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-eccccceeeeeehhhhHH
Confidence 9999999999999999999999999999999999999999999999999999998655443 578999999999999999
Q ss_pred ccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHH
Q 006500 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (643)
Q Consensus 284 ~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (643)
..+||.+++.+++..+|..+|+++||||+|..+.++.+..+..|+.+..+.+......+...+..++. ..+..+|+.
T Consensus 177 femgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~---a~K~aaLl~ 253 (529)
T KOG0337|consen 177 FEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK---AEKEAALLS 253 (529)
T ss_pred HhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc---HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877777677777766666643 456666666
Q ss_pred Hhhcc-CCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEE
Q 006500 364 LCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (643)
Q Consensus 364 ~~~~~-~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (643)
++... ...+++||+.|...++.+...|...|+.+..++|.|++.-|...+..|+.++..+||.|++++||+|||..+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 66543 34589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccc
Q 006500 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (643)
Q Consensus 443 I~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~ 495 (643)
||||.|....-|+||+||++|+|+.|++|.++.+.+..++-.+.-..+..+.-
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~ 386 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIF 386 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceee
Confidence 99999999999999999999999999999999999999998888887766553
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-55 Score=429.05 Aligned_cols=364 Identities=32% Similarity=0.536 Sum_probs=333.0
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
..+|++++|++.|++.+...||.+|+.+|+.||+++..|.|+++.+.+|+|||.+|.+++++.+.... ....+|+++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~---ke~qalila 101 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV---KETQALILA 101 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch---HHHHHHHhc
Confidence 45899999999999999999999999999999999999999999999999999999999999874432 234689999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhc-CCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCch
Q 006500 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~-~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (643)
|||+||.|+......++...+.++..+.||.........+. ..++|+++|||++.+.+... .+....++++|+||||.
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHh
Confidence 99999999999999999999999999999988775554444 45899999999999998776 67788899999999999
Q ss_pred hccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHH
Q 006500 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (643)
Q Consensus 283 l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (643)
++..||...+..+.+.+|...|++++|||++.++..+.+.++.+|+.+.+.........+.|+++.+.... +...|+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~---k~~~l~ 257 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE---KLDTLC 257 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc---cccHHH
Confidence 99999999999999999999999999999999999999999999999998777777778888888876543 666677
Q ss_pred HHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEE
Q 006500 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (643)
Q Consensus 363 ~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (643)
.++. .-...+|||||+..+..+...|...++.+..+||.|.+.+|..++..|+.|..+|||.|++++||+|+..+..|
T Consensus 258 dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 258 DLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 7766 34678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCccccc
Q 006500 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (643)
Q Consensus 443 I~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~~ 496 (643)
|||++|.+...|+||+||+||.|.+|.++.++...+...++.+.+.++..+.+.
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~ 389 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEEL 389 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceec
Confidence 999999999999999999999999999999999999999999998887766643
No 33
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-54 Score=473.27 Aligned_cols=376 Identities=37% Similarity=0.540 Sum_probs=334.1
Q ss_pred CCcccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCC--CCCCe
Q 006500 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAI 197 (643)
Q Consensus 120 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~ 197 (643)
.+.+..+|.+.|++..++..++.+||.+|+|||.+|||+++.|+|+|..|.||||||++|++|++.++.-.+. ...+|
T Consensus 360 ~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGP 439 (997)
T KOG0334|consen 360 CPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGP 439 (997)
T ss_pred CCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCc
Confidence 4566789999999999999999999999999999999999999999999999999999999999987765442 34589
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccC--ccCCCCeeEE
Q 006500 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM--SVDLDDLAVL 275 (643)
Q Consensus 198 ~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~--~~~l~~i~~l 275 (643)
.+||++|||+||.|+++++..|+...++++++++||.....+...++.++.|+|+|||++++.+..+. -.++.++.+|
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~l 519 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYL 519 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999886542 2256667799
Q ss_pred EEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhh
Q 006500 276 ILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV 355 (643)
Q Consensus 276 VvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (643)
|+||||+|+++||.+.+..|++.+++.+|+++||||++..+..+....++.|+.+.+.........+.+.+..+.. +.
T Consensus 520 v~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~--e~ 597 (997)
T KOG0334|consen 520 VLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAI--EN 597 (997)
T ss_pred eechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecC--ch
Confidence 9999999999999999999999999999999999999999999999999999998887666566666666655541 33
Q ss_pred hHHHHHHHHhh-ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccC
Q 006500 356 NQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (643)
Q Consensus 356 ~~~~~l~~~~~-~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 434 (643)
.+...|..++. ....+++||||.....|..+..-|...|+.|..|||+.++.+|..+++.|++|.+.+||+|++++|||
T Consensus 598 eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGL 677 (997)
T KOG0334|consen 598 EKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGL 677 (997)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccc
Confidence 44444544443 33368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccccchh
Q 006500 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 499 (643)
Q Consensus 435 Di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~~~~~ 499 (643)
|++.+.+|||||+|..+..|+||+|||||+|+.|.|++|+.+.+..+...|.+.+ .+....++
T Consensus 678 dv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al--~~~~~~~P 740 (997)
T KOG0334|consen 678 DVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL--ELSKQPVP 740 (997)
T ss_pred ccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH--HhccCCCc
Confidence 9999999999999999999999999999999999999999998888888887776 44444444
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.9e-52 Score=429.58 Aligned_cols=354 Identities=30% Similarity=0.473 Sum_probs=318.8
Q ss_pred CcccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEE
Q 006500 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (643)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vL 200 (643)
+.....|++|.|.++++..|...+|..||++|..|||.++.+-|+||.+..|+|||++|.+.+++.+..+. ..+.++
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~---~~~q~~ 97 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS---SHIQKV 97 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc---CcceeE
Confidence 33456789999999999999999999999999999999999999999999999999999999999886543 456799
Q ss_pred EEcCcHHHHHHHHHHHHHHhh-cCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeC
Q 006500 201 ILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (643)
Q Consensus 201 il~Ptr~La~Q~~~~~~~l~~-~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (643)
||+|||++|.|+.+.+..++. +.|++|.+++||.........++. ++|+|+|||||..++... .++.+.++++|+||
T Consensus 98 Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~-~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 98 IVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELG-AMNMSHVRLFVLDE 175 (980)
T ss_pred EEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhc-CCCccceeEEEecc
Confidence 999999999999999999986 579999999999887766665554 789999999999988775 68899999999999
Q ss_pred Cchhcc-CChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhh---
Q 006500 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV--- 355 (643)
Q Consensus 280 ah~l~~-~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 355 (643)
||.|++ ..|...+..|++.+|..+|+++||||.+..+.+++..+|.+|..+.........-++.|+++........
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsvee 255 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEE 255 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHH
Confidence 999998 5599999999999999999999999999999999999999999999887777777888887766543221
Q ss_pred --hHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEeccccccc
Q 006500 356 --NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (643)
Q Consensus 356 --~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (643)
.+...|-.+++..+-...||||+....|+-++.+|...|+.|-+|.|.|+|.+|..+++.++.-.++|||+||+.+||
T Consensus 256 mrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRG 335 (980)
T KOG4284|consen 256 MRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARG 335 (980)
T ss_pred HHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhcc
Confidence 234456666777777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcH
Q 006500 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (643)
Q Consensus 434 lDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~ 479 (643)
||-+.|++|||.|+|.+..+|.||+|||||+|..|.+++|+.....
T Consensus 336 IDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 336 IDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred CCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999977643
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=8.7e-51 Score=459.87 Aligned_cols=359 Identities=19% Similarity=0.233 Sum_probs=280.4
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 006500 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (643)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~ 210 (643)
.|++.+.++|..+||..|+++|.++||.++.|+|+++++|||||||++|++|+++.+... +++++|||+|||+||.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----~~~~aL~l~PtraLa~ 95 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----PRATALYLAPTKALAA 95 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----CCcEEEEEcChHHHHH
Confidence 488999999999999999999999999999999999999999999999999999998753 2468999999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccC---ccCCCCeeEEEEeCCchhccCC
Q 006500 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM---SVDLDDLAVLILDEADRLLELG 287 (643)
Q Consensus 211 Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~---~~~l~~i~~lVvDEah~l~~~g 287 (643)
|+.+.++.+. ..++++..+.|+.+. .+...+...++|+|+||++|...+.... ...++++++|||||||.+.+.
T Consensus 96 q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~- 172 (742)
T TIGR03817 96 DQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV- 172 (742)
T ss_pred HHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc-
Confidence 9999999987 457888887777664 4455667779999999999875432211 123788999999999998763
Q ss_pred hHHHHHHH-------HHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEec---------
Q 006500 288 FSAEIHEL-------VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR--------- 351 (643)
Q Consensus 288 ~~~~~~~i-------~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------- 351 (643)
|...+..+ ....+..+|++++|||+++... +...++..|+.+.. ... .+....+.......
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~-~~~-~~~~~~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVT-EDG-SPRGARTVALWEPPLTELTGENG 249 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEEC-CCC-CCcCceEEEEecCCccccccccc
Confidence 55444333 3344677899999999997754 56666667755432 111 22222222211111
Q ss_pred -----hhhhhHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhc--------CCceEEccCCCCHHHHHHHHHHhhc
Q 006500 352 -----MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--------ALKAAELHGNLTQAQRLEALELFRK 418 (643)
Q Consensus 352 -----~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~--------~~~~~~lh~~~~~~~R~~~l~~F~~ 418 (643)
.....+...+..++.. +.++||||+|+..++.++.+|... +..+..+||++++.+|..+++.|++
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred cccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 0111233344444443 579999999999999999988653 5678899999999999999999999
Q ss_pred CCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEec--cCcHHHHHHHHHHhcCccccc
Q 006500 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT--DNDRSLLKAIAKRAGSKLKSR 496 (643)
Q Consensus 419 g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~--~~d~~~l~~i~~~~~~~~~~~ 496 (643)
|+.++||||+++++||||+++++||||++|.+..+|+||+|||||.|+.|.+++++. +.|..++..+.+.+...+...
T Consensus 328 G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 328 GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999999999999986 446666776766666666554
Q ss_pred chhhh
Q 006500 497 IVAEQ 501 (643)
Q Consensus 497 ~~~~~ 501 (643)
.++..
T Consensus 408 ~~~~~ 412 (742)
T TIGR03817 408 VFDPD 412 (742)
T ss_pred eeCCC
Confidence 44433
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.2e-49 Score=446.47 Aligned_cols=345 Identities=21% Similarity=0.259 Sum_probs=265.9
Q ss_pred CCccc--CCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEE
Q 006500 125 NSFME--LNLSRPLLRACE-ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (643)
Q Consensus 125 ~~f~~--l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLi 201 (643)
..|.. ++.+..+...+. .+||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|+|.. ++.+||
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------~GiTLV 505 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------PGITLV 505 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------CCcEEE
Confidence 34553 556666766664 489999999999999999999999999999999999999999853 235999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhc------CCCcEEEECchhHHH--H-HhccCcc-CCCC
Q 006500 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR------SMPDIVVATPGRMID--H-LRNSMSV-DLDD 271 (643)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~------~~~~Ivv~Tp~~L~~--~-l~~~~~~-~l~~ 271 (643)
|+|+++|+.++...+.. .++.+..+.++.....+...+. ..++|+|+||++|.. . +.....+ ....
T Consensus 506 ISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~ 581 (1195)
T PLN03137 506 ISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGL 581 (1195)
T ss_pred EeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccc
Confidence 99999999855444443 4789999999988766544332 468999999999852 1 2111111 2345
Q ss_pred eeEEEEeCCchhccCC--hHHHHHHH--HHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEE
Q 006500 272 LAVLILDEADRLLELG--FSAEIHEL--VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV 347 (643)
Q Consensus 272 i~~lVvDEah~l~~~g--~~~~~~~i--~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 347 (643)
+.+|||||||++++|| |+..+..+ +....+..|+++||||+++.+...+...+.......+.....++ ++...++
T Consensus 582 LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~Vv 660 (1195)
T PLN03137 582 LARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSVV 660 (1195)
T ss_pred cceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEEe
Confidence 8899999999999998 77766653 33334567899999999998887665544332222222233333 2322221
Q ss_pred EEechhhhhHHHHHHHHhh-ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEe
Q 006500 348 RIRRMREVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (643)
Q Consensus 348 ~~~~~~~~~~~~~l~~~~~-~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLva 426 (643)
... ......+..++. ...+...||||.|+..++.++.+|...|+.+..+||+|++.+|..+++.|..|+++||||
T Consensus 661 ---~k~-kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVA 736 (1195)
T PLN03137 661 ---PKT-KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICA 736 (1195)
T ss_pred ---ccc-hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 111 111123333433 334567899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHH
Q 006500 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 427 T~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~ 487 (643)
|+++++|||+|+|++||||++|.++..|+||+|||||.|.+|.|++|++..|...++.+..
T Consensus 737 TdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 737 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred echhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988877777654
No 37
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-50 Score=417.70 Aligned_cols=366 Identities=35% Similarity=0.485 Sum_probs=315.5
Q ss_pred cccCCccc----CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCC--CCCC
Q 006500 122 FHANSFME----LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRIP 195 (643)
Q Consensus 122 ~~~~~f~~----l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~ 195 (643)
....+|.+ +..++.+++.+...||..|+|+|..++|.++.++|++.|+|||||||++|.+|++.++.... +...
T Consensus 129 ~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~ 208 (593)
T KOG0344|consen 129 PPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKV 208 (593)
T ss_pred CccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCcc
Confidence 34455554 56788999999999999999999999999999999999999999999999999999987654 2245
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHh--hcCCceEEEEecCCChHHHH-HHhcCCCcEEEECchhHHHHHhccC-ccCCCC
Q 006500 196 AIRVLILTPTRELAVQVHSMIEKIA--QFTDIRCCLVVGGLSTKMQE-TALRSMPDIVVATPGRMIDHLRNSM-SVDLDD 271 (643)
Q Consensus 196 ~~~vLil~Ptr~La~Q~~~~~~~l~--~~~~~~v~~~~g~~~~~~~~-~~l~~~~~Ivv~Tp~~L~~~l~~~~-~~~l~~ 271 (643)
+.+++|+.|||+||.|++.++.++. ...++++..+.......... ......++|+|.||-++..++.... .+.++.
T Consensus 209 gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~ 288 (593)
T KOG0344|consen 209 GLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSK 288 (593)
T ss_pred ceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhhe
Confidence 7789999999999999999999998 55666655554443222211 1223357999999999999887642 357999
Q ss_pred eeEEEEeCCchhccC-ChHHHHHHHHHHCC-CCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEE
Q 006500 272 LAVLILDEADRLLEL-GFSAEIHELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI 349 (643)
Q Consensus 272 i~~lVvDEah~l~~~-g~~~~~~~i~~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 349 (643)
+.++|+||||++.+. +|..++..|+..|. +...+-+||||++.++.+++......++.+.+.........+.|..+.+
T Consensus 289 V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~ 368 (593)
T KOG0344|consen 289 VEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFC 368 (593)
T ss_pred eeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheee
Confidence 999999999999988 89999999887765 4567789999999999999999999998888766555556677777776
Q ss_pred echhhhhHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHH-hhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecc
Q 006500 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF-GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (643)
Q Consensus 350 ~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L-~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~ 428 (643)
.. ...+...+..++......++|||+++++.+..|...| ...++++..+||..++.+|..++++|+.|++.|||||+
T Consensus 369 gs--e~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTd 446 (593)
T KOG0344|consen 369 GS--EKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTD 446 (593)
T ss_pred ec--chhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehh
Confidence 53 4567777888888888899999999999999999999 67799999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHh
Q 006500 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (643)
Q Consensus 429 ~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~ 489 (643)
+++||||+.+|++|||||+|.+..+|+||+||+||+|+.|++|+||++.|...++.|++..
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888753
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.4e-49 Score=428.53 Aligned_cols=326 Identities=22% Similarity=0.306 Sum_probs=256.1
Q ss_pred HHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006500 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (643)
Q Consensus 141 ~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~ 220 (643)
..+||..|+|+|.++|+.++.|+|+++++|||||||++|++|++.. ++.+|||+||++|+.|++..+..
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---------~~~~lVi~P~~~L~~dq~~~l~~-- 73 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---------DGITLVISPLISLMEDQVLQLKA-- 73 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---------CCcEEEEecHHHHHHHHHHHHHH--
Confidence 3579999999999999999999999999999999999999999842 23589999999999998888875
Q ss_pred hcCCceEEEEecCCChHHHHH----HhcCCCcEEEECchhHHHHHhccCcc-CCCCeeEEEEeCCchhccCC--hHHHHH
Q 006500 221 QFTDIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLELG--FSAEIH 293 (643)
Q Consensus 221 ~~~~~~v~~~~g~~~~~~~~~----~l~~~~~Ivv~Tp~~L~~~l~~~~~~-~l~~i~~lVvDEah~l~~~g--~~~~~~ 293 (643)
.++.+..+.++........ ...+.++|+++||+++.....-...+ ....+++|||||||++++|| |+..+.
T Consensus 74 --~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~ 151 (470)
T TIGR00614 74 --SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYK 151 (470)
T ss_pred --cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHH
Confidence 4778888888766553322 22455899999999975432110012 46789999999999999998 566555
Q ss_pred HH---HHHCCCCceeEEEeeccchhHHHHHHHh--cCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhh-c
Q 006500 294 EL---VRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS-K 367 (643)
Q Consensus 294 ~i---~~~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 367 (643)
.+ ...+ +..+++++|||+++.+...+... +..|..+.. ...++ ++.. .+..... .....+..++. .
T Consensus 152 ~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~--s~~r~-nl~~---~v~~~~~-~~~~~l~~~l~~~ 223 (470)
T TIGR00614 152 ALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT--SFDRP-NLYY---EVRRKTP-KILEDLLRFIRKE 223 (470)
T ss_pred HHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC--CCCCC-CcEE---EEEeCCc-cHHHHHHHHHHHh
Confidence 43 3344 46789999999998876655443 344544332 22222 2221 1111111 12223334443 4
Q ss_pred cCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCC
Q 006500 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447 (643)
Q Consensus 368 ~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~ 447 (643)
..+..+||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||||++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~ 303 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL 303 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHH
Q 006500 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 448 p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~ 487 (643)
|.++..|+||+|||||.|.+|.|++|+++.|...++.+..
T Consensus 304 P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 304 PKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 9999999999999999999999999999999887777754
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.9e-47 Score=424.40 Aligned_cols=333 Identities=21% Similarity=0.282 Sum_probs=259.5
Q ss_pred CCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 006500 132 LSRPLLRACE-ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (643)
Q Consensus 132 l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~ 210 (643)
+.......|+ .+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. .+.+|||+|+++|+.
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------DGLTLVVSPLISLMK 79 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------CCCEEEEecHHHHHH
Confidence 3334444443 379999999999999999999999999999999999999999843 235899999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCChHHHHHH----hcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccC
Q 006500 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (643)
Q Consensus 211 Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~----l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~ 286 (643)
|+.+.+.. .++.+..+.++......... ..+..+++++||++|....... .+...++++|||||||++++|
T Consensus 80 dqv~~l~~----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 80 DQVDQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCccccccc
Confidence 99888876 36777777777665543322 2345799999999986321111 233457899999999999999
Q ss_pred C--hHHHHHHH---HHHCCCCceeEEEeeccchhHHHHHHHh--cCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHH
Q 006500 287 G--FSAEIHEL---VRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359 (643)
Q Consensus 287 g--~~~~~~~i---~~~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (643)
| |+..+..+ ...+ +..+++++|||+++.....+... +..|..... ...++ ++...+. . ......
T Consensus 155 G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~--~~~r~-nl~~~v~--~---~~~~~~ 225 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--SFDRP-NIRYTLV--E---KFKPLD 225 (607)
T ss_pred cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC--CCCCC-cceeeee--e---ccchHH
Confidence 8 55554433 3344 46789999999998776544333 344543332 12222 2221111 1 112233
Q ss_pred HHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCc
Q 006500 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439 (643)
Q Consensus 360 ~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v 439 (643)
.+..++....+.++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|+.|+.+|||||+++++|||+|+|
T Consensus 226 ~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V 305 (607)
T PRK11057 226 QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNV 305 (607)
T ss_pred HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCc
Confidence 44555555667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHH
Q 006500 440 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 440 ~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~ 487 (643)
++||||++|.|...|+||+|||||.|.+|.|++|+++.|...++.+..
T Consensus 306 ~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~ 353 (607)
T PRK11057 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred CEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999877766654
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.8e-46 Score=417.81 Aligned_cols=324 Identities=24% Similarity=0.341 Sum_probs=260.1
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 142 ~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
.+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+|+++|+.|+++.+..+
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------~g~~lVisPl~sL~~dq~~~l~~~-- 76 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------KGLTVVISPLISLMKDQVDQLRAA-- 76 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHc--
Confidence 489999999999999999999999999999999999999999842 235899999999999998888763
Q ss_pred cCCceEEEEecCCChHHHHH----HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC--hHHHHHHH
Q 006500 222 FTDIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHEL 295 (643)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~----~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g--~~~~~~~i 295 (643)
++.+..+.++.+...... ...+..+|+++||++|....... .+...++++|||||||+++.|| |+..+..+
T Consensus 77 --gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 --GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 688888888877654432 23456899999999986432221 2345679999999999999988 66655544
Q ss_pred ---HHHCCCCceeEEEeeccchhHHHHHHHhcC--CCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhccCC
Q 006500 296 ---VRLCPKRRQTMLFSATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT 370 (643)
Q Consensus 296 ---~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 370 (643)
...+|. .+++++|||+++.+...+...+. .+..+. ....++ ++...... .......+..++....+
T Consensus 154 ~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~-nl~~~v~~-----~~~~~~~l~~~l~~~~~ 224 (591)
T TIGR01389 154 GSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI--TSFDRP-NLRFSVVK-----KNNKQKFLLDYLKKHRG 224 (591)
T ss_pred HHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe--cCCCCC-CcEEEEEe-----CCCHHHHHHHHHHhcCC
Confidence 444544 44999999999988776665543 333222 122222 22222111 12234445555555557
Q ss_pred ceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCC
Q 006500 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450 (643)
Q Consensus 371 ~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s 450 (643)
.++||||+|+..++.++.+|...|+++..+||+|+..+|..+++.|.+|+.+|||||+++++|||+|+|++||||++|.|
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s 304 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGN 304 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHH
Q 006500 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (643)
Q Consensus 451 ~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~ 488 (643)
...|+|++|||||.|.+|.|++|+++.|...++.+...
T Consensus 305 ~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 305 LESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQ 342 (591)
T ss_pred HHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhc
Confidence 99999999999999999999999999998877776553
No 41
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-47 Score=351.66 Aligned_cols=329 Identities=35% Similarity=0.605 Sum_probs=282.8
Q ss_pred CcccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEE
Q 006500 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (643)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vL 200 (643)
+.+.+.|.++-|.|++++++...||..|+.+|.+|||.++.|-|++..|..|.|||.+|.+..|+.+-.-+. ...+|
T Consensus 38 ~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g---~vsvl 114 (387)
T KOG0329|consen 38 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG---QVSVL 114 (387)
T ss_pred EEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC---eEEEE
Confidence 345677999999999999999999999999999999999999999999999999999999999988754322 45699
Q ss_pred EEcCcHHHHHHHHHHHHHHhhc-CCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeC
Q 006500 201 ILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (643)
Q Consensus 201 il~Ptr~La~Q~~~~~~~l~~~-~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (643)
|+|.||+||.|+.++...|+++ +++++.+++||.+.......+++.|+|+|+|||+++.+.++. .+++.+++.+|+||
T Consensus 115 vmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k-~l~lk~vkhFvlDE 193 (387)
T KOG0329|consen 115 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR-SLNLKNVKHFVLDE 193 (387)
T ss_pred EEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc-cCchhhcceeehhh
Confidence 9999999999999999999988 679999999999999888899999999999999999988875 78999999999999
Q ss_pred Cchhcc-CChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCC-CCCceEEEEEEechhhhhH
Q 006500 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR-PSTLTEEVVRIRRMREVNQ 357 (643)
Q Consensus 280 ah~l~~-~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 357 (643)
||.|+. ...+..+.+|.+..|...|+++||||++.++....+.++.+|+.+.++.+... .-++.|.++... ...+
T Consensus 194 cdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLk---e~eK 270 (387)
T KOG0329|consen 194 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLK---ENEK 270 (387)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhh---hhhh
Confidence 999985 56889999999999999999999999999999999999999999988765443 234556555543 3344
Q ss_pred HHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCC
Q 006500 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (643)
Q Consensus 358 ~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~ 437 (643)
...+..++....-..++||+.+... +. | +.+ ||||++++||+||.
T Consensus 271 Nrkl~dLLd~LeFNQVvIFvKsv~R------------------------------l~-f---~kr-~vat~lfgrgmdie 315 (387)
T KOG0329|consen 271 NRKLNDLLDVLEFNQVVIFVKSVQR------------------------------LS-F---QKR-LVATDLFGRGMDIE 315 (387)
T ss_pred hhhhhhhhhhhhhcceeEeeehhhh------------------------------hh-h---hhh-hHHhhhhccccCcc
Confidence 4455555555555789999998765 00 3 123 89999999999999
Q ss_pred CccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccC-cHHHHHHHHHHhcC
Q 006500 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGS 491 (643)
Q Consensus 438 ~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~-d~~~l~~i~~~~~~ 491 (643)
.|+.|||||+|.++.+|+||+|||||.|..|.+++|++.. +...+..+..+...
T Consensus 316 rvNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v 370 (387)
T KOG0329|consen 316 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEV 370 (387)
T ss_pred cceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhc
Confidence 9999999999999999999999999999999999999764 56777777776543
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.2e-44 Score=412.62 Aligned_cols=339 Identities=22% Similarity=0.302 Sum_probs=249.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCC---CCCeEEEEEcCcHHH
Q 006500 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR---IPAIRVLILTPTREL 208 (643)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~---~~~~~vLil~Ptr~L 208 (643)
+++.+.+.+.. +|..|+|+|.+++|.++.|+|++++||||||||++|.+|+++++...... .+++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56677776655 79999999999999999999999999999999999999999998753221 346789999999999
Q ss_pred HHHHHHHHHH-------Hh-----hcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCc-cCCCCeeEE
Q 006500 209 AVQVHSMIEK-------IA-----QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-VDLDDLAVL 275 (643)
Q Consensus 209 a~Q~~~~~~~-------l~-----~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~-~~l~~i~~l 275 (643)
+.|+++.+.. ++ ...++++...+|+.+.......+...++|+|+||++|..++.+... ..+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876553 22 1127788999999888877777888899999999999877754321 147889999
Q ss_pred EEeCCchhccCChHH----HHHHHHHHCCCCceeEEEeeccchhHHHHHHHhc-------CCCeEEecCCCCCCCCCceE
Q 006500 276 ILDEADRLLELGFSA----EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSL-------TKPLRLSADPSAKRPSTLTE 344 (643)
Q Consensus 276 VvDEah~l~~~g~~~----~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~-------~~p~~~~~~~~~~~~~~~~~ 344 (643)
||||||.+.+..+.. .+..+....+...|+|++|||+++ ...+..... ..+..+.. ........+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~-~~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVD-ARFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEc-cCCCccceEEE
Confidence 999999999765443 334444555577899999999975 223322221 11222211 11111111100
Q ss_pred E-----EEEEech-hhhhHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhc------CCceEEccCCCCHHHHHHH
Q 006500 345 E-----VVRIRRM-REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLEA 412 (643)
Q Consensus 345 ~-----~~~~~~~-~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~------~~~~~~lh~~~~~~~R~~~ 412 (643)
. +...... ........+..++. .+.++||||+|+..++.++..|... +..+..+||+|++.+|..+
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 0 0000000 00011122222222 2468999999999999999998762 4689999999999999999
Q ss_pred HHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccC-CCccEEEEEec
Q 006500 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVT 475 (643)
Q Consensus 413 l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~-g~~g~~~~l~~ 475 (643)
++.|++|..+|||||+++++|||+|++++||+|+.|.++..|+||+||+||. |..+.++++..
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999999999999999985 43444444443
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.9e-44 Score=408.71 Aligned_cols=334 Identities=24% Similarity=0.312 Sum_probs=257.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcC
Q 006500 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (643)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~P 204 (643)
.|++++|++.+++++...||..|+|+|.++++. ++.|+|+++++|||||||++|.+|++.++.. +.++|||+|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~------~~kal~i~P 75 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR------GGKALYIVP 75 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc------CCcEEEEeC
Confidence 477899999999999999999999999999998 7789999999999999999999999999852 346999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc
Q 006500 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (643)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~ 284 (643)
+++||.|+++.+..+.. .++++..++|+...... ....++|+|+||+++..++.+. ...+.++++|||||+|.+.
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVDEVHLID 150 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEECccccC
Confidence 99999999999998754 38899999998654432 2345899999999998888764 3447889999999999999
Q ss_pred cCChHHHHHHHHH---HCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEE------------EE
Q 006500 285 ELGFSAEIHELVR---LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV------------RI 349 (643)
Q Consensus 285 ~~g~~~~~~~i~~---~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------------~~ 349 (643)
+.++...+..++. ..+...|+|++|||+++ ..++....-...+ ....+|..+..... .+
T Consensus 151 d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~-----~~~~rpv~l~~~v~~~~~~~~~~~~~~~ 224 (737)
T PRK02362 151 SANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELV-----DSEWRPIDLREGVFYGGAIHFDDSQREV 224 (737)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcc-----cCCCCCCCCeeeEecCCeeccccccccC
Confidence 8777777666544 34567899999999975 2333322211110 00111211111110 00
Q ss_pred echhhhhHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhc------------------------------------
Q 006500 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------------------------------------ 393 (643)
Q Consensus 350 ~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~------------------------------------ 393 (643)
...........+...+. .++++||||+|+..++.++..|...
T Consensus 225 ~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 302 (737)
T PRK02362 225 EVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCV 302 (737)
T ss_pred CCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHH
Confidence 00000111122222222 4679999999999999888777532
Q ss_pred CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEe----cC-----CCCChhHHHHHHhhcccC
Q 006500 394 ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA-----CPRDLTSYVHRVGRTARA 464 (643)
Q Consensus 394 ~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~----~d-----~p~s~~~y~Qr~GRagR~ 464 (643)
...++++||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.++.+|.||+|||||.
T Consensus 303 ~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 303 AKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred HhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 136889999999999999999999999999999999999999999999997 76 688999999999999999
Q ss_pred CCc--cEEEEEeccCc
Q 006500 465 GRE--GYAVTFVTDND 478 (643)
Q Consensus 465 g~~--g~~~~l~~~~d 478 (643)
|.. |.+++++...+
T Consensus 383 g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 383 GLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCceEEEEecCch
Confidence 865 99999987653
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=6.5e-43 Score=387.57 Aligned_cols=316 Identities=21% Similarity=0.225 Sum_probs=241.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCC-CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEE-EcCcHHHHHHHHHHHHHHh
Q 006500 143 LGYSKPTPIQAACIPLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI-LTPTRELAVQVHSMIEKIA 220 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLi-l~Ptr~La~Q~~~~~~~l~ 220 (643)
.||. |||||.++||.++.|+ ++++++|||||||.+|.++++.. .. ....++.|| ++|||+|+.|+++.+..++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~---~~~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI---GAKVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc---cccccceEEEeCchHHHHHHHHHHHHHHH
Confidence 5888 9999999999999998 57788999999999766555522 11 122344555 7799999999999999998
Q ss_pred hcC-----------------------CceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCc-----------
Q 006500 221 QFT-----------------------DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS----------- 266 (643)
Q Consensus 221 ~~~-----------------------~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~----------- 266 (643)
+.. ++++..++||.+...++..+..+++|||+|+ +++.+..-
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~ 162 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSR 162 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccccc
Confidence 754 4889999999999999999999999999995 44443211
Q ss_pred -c---CCCCeeEEEEeCCchhccCChHHHHHHHHHHC--CC---CceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCC
Q 006500 267 -V---DLDDLAVLILDEADRLLELGFSAEIHELVRLC--PK---RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337 (643)
Q Consensus 267 -~---~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~--~~---~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~ 337 (643)
+ .+.++++||||||| +.++|...+..|+..+ ++ ++|+++||||++.++..+...++..+..+.+.....
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l 240 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL 240 (844)
T ss_pred cchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccc
Confidence 0 26889999999999 7889999999999964 43 269999999999988888877777776655543322
Q ss_pred CCCCceEEEEEEechhhh-hHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHH-----H
Q 006500 338 RPSTLTEEVVRIRRMREV-NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL-----E 411 (643)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~-----~ 411 (643)
....+.+. +........ .....+..++ ...++++||||||+..++.++..|...++ ..|||.|++.+|. .
T Consensus 241 ~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~ 316 (844)
T TIGR02621 241 AAKKIVKL-VPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKE 316 (844)
T ss_pred cccceEEE-EecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHH
Confidence 22333332 222111100 0111122222 23457899999999999999999998877 8999999999999 8
Q ss_pred HHHHhhc----CC-------ceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCcc-EEEEEecc
Q 006500 412 ALELFRK----QH-------VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG-YAVTFVTD 476 (643)
Q Consensus 412 ~l~~F~~----g~-------~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g-~~~~l~~~ 476 (643)
+++.|++ |. ..|||||+++++||||+. ++||++..| ..+|+||+||+||.|..| ..++++..
T Consensus 317 il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 317 IFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 8999987 44 679999999999999986 899998877 689999999999999753 43555533
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.8e-43 Score=399.02 Aligned_cols=335 Identities=20% Similarity=0.272 Sum_probs=261.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcC
Q 006500 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (643)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~P 204 (643)
.|.++++++.+.+.+...||..|+|+|.++++. ++.|+|+++++|||||||++|.+|+++++... +.++|||+|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-----~~~~l~l~P 76 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-----GGKAVYLVP 76 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-----CCeEEEEeC
Confidence 467889999999999999999999999999985 78899999999999999999999999988643 347999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc
Q 006500 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (643)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~ 284 (643)
+++|+.|+++.+..|.. .++++..++|+...... ....++|+|+||+++..++... ...+.++++|||||+|.+.
T Consensus 77 ~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~-~~~l~~l~lvViDE~H~l~ 151 (720)
T PRK00254 77 LKALAEEKYREFKDWEK-LGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKLVVADEIHLIG 151 (720)
T ss_pred hHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCC-chhhhcCCEEEEcCcCccC
Confidence 99999999999988753 58999999998765432 2356899999999998877654 3457899999999999999
Q ss_pred cCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEE-----EEEEechh----hh
Q 006500 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE-----VVRIRRMR----EV 355 (643)
Q Consensus 285 ~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~ 355 (643)
++++...+..++..++..+|+|++|||+++ ..++... +..+... ...++..+... +....... ..
T Consensus 152 ~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~w-l~~~~~~----~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 152 SYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEW-LNAELVV----SDWRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred CccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHH-hCCcccc----CCCCCCcceeeEecCCeeeccCcchhcchH
Confidence 988999999999999889999999999975 3444443 2222111 11222222211 11111100 00
Q ss_pred hHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhh---------------------------------cCCceEEccC
Q 006500 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL---------------------------------AALKAAELHG 402 (643)
Q Consensus 356 ~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~---------------------------------~~~~~~~lh~ 402 (643)
.....+...+. .++++||||+|+..++.++..|.. ....++++||
T Consensus 226 ~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHa 303 (720)
T PRK00254 226 SWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHA 303 (720)
T ss_pred HHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCC
Confidence 11112222232 357899999999999877655532 1235899999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEe-------cCCCC-ChhHHHHHHhhcccCC--CccEEEE
Q 006500 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN-------YACPR-DLTSYVHRVGRTARAG--REGYAVT 472 (643)
Q Consensus 403 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~-------~d~p~-s~~~y~Qr~GRagR~g--~~g~~~~ 472 (643)
+|++.+|..+.+.|++|..+|||||+++++|+|+|.+++||. |+.|. +...|.||+|||||.| ..|.+++
T Consensus 304 gl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii 383 (720)
T PRK00254 304 GLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAII 383 (720)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEE
Confidence 999999999999999999999999999999999999999994 56554 5679999999999965 6799999
Q ss_pred EeccCc
Q 006500 473 FVTDND 478 (643)
Q Consensus 473 l~~~~d 478 (643)
++...+
T Consensus 384 ~~~~~~ 389 (720)
T PRK00254 384 VATTEE 389 (720)
T ss_pred EecCcc
Confidence 987655
No 46
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.3e-43 Score=373.85 Aligned_cols=326 Identities=23% Similarity=0.331 Sum_probs=259.4
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 142 ~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
-+||..+++-|.++|..++.|+|+++..|||.||+++|++|++-. .+.+|||+|..+|+....+.++.
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G~TLVVSPLiSLM~DQV~~l~~--- 79 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EGLTLVVSPLISLMKDQVDQLEA--- 79 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CCCEEEECchHHHHHHHHHHHHH---
Confidence 479999999999999999999999999999999999999999843 22589999999999877777766
Q ss_pred cCCceEEEEecCCChHHHHHHh----cCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC--hHHHHHHH
Q 006500 222 FTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHEL 295 (643)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l----~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g--~~~~~~~i 295 (643)
.|+.+..+.+..+.......+ .+..++++-+|++|...-... .+.-..+.++||||||++++|| |++.+..+
T Consensus 80 -~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~-~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 80 -AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE-LLKRLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred -cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH-HHHhCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 578999988887766544332 345799999999985431110 1224468899999999999998 88888776
Q ss_pred HH---HCCCCceeEEEeeccchhHHHHHHHhcC--CCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhccCC
Q 006500 296 VR---LCPKRRQTMLFSATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT 370 (643)
Q Consensus 296 ~~---~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 370 (643)
.. .+| +++++++|||.++.+...+...+. .+..+.. ...+|. +...+.... ....+...+.. ......
T Consensus 158 g~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~--sfdRpN-i~~~v~~~~--~~~~q~~fi~~-~~~~~~ 230 (590)
T COG0514 158 GRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG--SFDRPN-LALKVVEKG--EPSDQLAFLAT-VLPQLS 230 (590)
T ss_pred HHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe--cCCCch-hhhhhhhcc--cHHHHHHHHHh-hccccC
Confidence 44 344 788999999999998887765443 3323222 333442 222222111 11122222221 124456
Q ss_pred ceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCC
Q 006500 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450 (643)
Q Consensus 371 ~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s 450 (643)
+..||||.|++.++.++.+|...|+++..+|++|+..+|..+.+.|..++..|+|||.++++|||.|+|++|||||+|.|
T Consensus 231 ~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s 310 (590)
T COG0514 231 KSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGS 310 (590)
T ss_pred CCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHH
Q 006500 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (643)
Q Consensus 451 ~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~ 488 (643)
.++|+|-+|||||.|.+..|++|+++.|....+.+.+.
T Consensus 311 ~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 311 IESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred HHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999998877776655
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=6.1e-42 Score=390.97 Aligned_cols=333 Identities=19% Similarity=0.201 Sum_probs=256.9
Q ss_pred CCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcC------CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc
Q 006500 131 NLSRPLLRAC-EALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 131 ~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~l~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
..+..+...+ ..++|. ||++|..+|+.++.+ .|++++|+||||||.+|+++++..+.. +.+++||+
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------g~qvlvLv 507 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------GKQVAVLV 507 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh------CCeEEEEe
Confidence 3445555555 457885 999999999999985 799999999999999999999988753 35799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHH---hc-CCCcEEEECchhHHHHHhccCccCCCCeeEEEEeC
Q 006500 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA---LR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~---l~-~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (643)
||++||.|+++.+..++...++++..++|+.+....... +. +.++|||+||..+ .. .+.+.++++|||||
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~--~v~f~~L~llVIDE 581 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QK--DVKFKDLGLLIIDE 581 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hC--CCCcccCCEEEeec
Confidence 999999999999999887778999999988765443332 32 4689999999432 22 46788999999999
Q ss_pred CchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHH
Q 006500 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359 (643)
Q Consensus 280 ah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (643)
+|++ .......+..++..+|+++||||+.+....+....+.++..+...+.... .+...+... .......
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~--~V~t~v~~~---~~~~i~~ 651 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRL--PVRTFVMEY---DPELVRE 651 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCcc--ceEEEEEec---CHHHHHH
Confidence 9994 22334556667788999999999988776665555566655554332211 222222221 1111111
Q ss_pred HHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhc--CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCC
Q 006500 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (643)
Q Consensus 360 ~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~ 437 (643)
.+...+ ..+++++|||+++..++.++..|... ++++..+||.|++.+|..++..|++|+.+|||||+++++|||+|
T Consensus 652 ~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp 729 (926)
T TIGR00580 652 AIRREL--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIP 729 (926)
T ss_pred HHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccc
Confidence 121112 23578999999999999999999874 78999999999999999999999999999999999999999999
Q ss_pred CccEEEecCCCC-ChhHHHHHHhhcccCCCccEEEEEeccC------cHHHHHHHHHH
Q 006500 438 GVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDN------DRSLLKAIAKR 488 (643)
Q Consensus 438 ~v~~VI~~d~p~-s~~~y~Qr~GRagR~g~~g~~~~l~~~~------d~~~l~~i~~~ 488 (643)
++++||++++|. +...|.||+||+||.|+.|.|++++.+. ..+.++.|.+.
T Consensus 730 ~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 730 NANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred cCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 999999999976 6779999999999999999999998653 34555555543
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.5e-41 Score=393.86 Aligned_cols=329 Identities=21% Similarity=0.224 Sum_probs=257.8
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcC------CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 135 PLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 135 ~l~~~l~~~g~~~~~~~Q~~~i~~~l~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
...+.+..++| .||++|.++|+.++.+ .|++++|+||+|||.+|+.+++..+. .+.+++||+||++|
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------~g~qvlvLvPT~eL 661 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------NHKQVAVLVPTTLL 661 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------cCCeEEEEeCcHHH
Confidence 44556678899 5999999999999997 89999999999999998888877653 24579999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhc----CCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc
Q 006500 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (643)
Q Consensus 209 a~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~----~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~ 284 (643)
|.|+++.+.+++...++++.+++|+.+...+...+. +.++|+|+||+.| .. .+.+.++++|||||+|++
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~--~v~~~~L~lLVIDEahrf- 734 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS--DVKWKDLGLLIVDEEHRF- 734 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC--CCCHhhCCEEEEechhhc-
Confidence 999999999876666888989999887766654432 4689999999643 22 456788999999999996
Q ss_pred cCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHH
Q 006500 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364 (643)
Q Consensus 285 ~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (643)
|+.. ...+..++..+|+++||||+.+....+....+.++..+...+... ..+.+....+. ....+...+..+
T Consensus 735 --G~~~--~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~--~~~~k~~il~el 806 (1147)
T PRK10689 735 --GVRH--KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYD--SLVVREAILREI 806 (1147)
T ss_pred --chhH--HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecC--cHHHHHHHHHHH
Confidence 4332 345667788999999999998888777777777887666533321 12333332221 111223333333
Q ss_pred hhccCCceEEEEeCCHHHHHHHHHHHhhc--CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEE
Q 006500 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (643)
Q Consensus 365 ~~~~~~~~~LIF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (643)
. .+++++|||+++..++.++..|... ++.+..+||+|++.+|.+++..|++|+.+|||||+++++|||+|+|++|
T Consensus 807 ~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~V 883 (1147)
T PRK10689 807 L---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 (1147)
T ss_pred h---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEE
Confidence 3 2578999999999999999999877 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCC-CChhHHHHHHhhcccCCCccEEEEEeccC------cHHHHHHHHHH
Q 006500 443 INYACP-RDLTSYVHRVGRTARAGREGYAVTFVTDN------DRSLLKAIAKR 488 (643)
Q Consensus 443 I~~d~p-~s~~~y~Qr~GRagR~g~~g~~~~l~~~~------d~~~l~~i~~~ 488 (643)
|+.+.+ .+...|+||+||+||.|+.|.|++++.+. ....++.|.+.
T Consensus 884 Ii~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred EEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 954443 24567999999999999999999998543 24555555543
No 49
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.1e-41 Score=391.50 Aligned_cols=284 Identities=22% Similarity=0.257 Sum_probs=222.4
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
.|+ .|+++|..++|.++.|+|++++||||||||+ |.++++..+.. .++++|||+||++|+.|+++.++.++..
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----KGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----cCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 477 7999999999999999999999999999996 56666555432 2567999999999999999999999988
Q ss_pred CCceEEEEecCCCh-----HHHHHHhc-CCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhcc-----------
Q 006500 223 TDIRCCLVVGGLST-----KMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----------- 285 (643)
Q Consensus 223 ~~~~v~~~~g~~~~-----~~~~~~l~-~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~----------- 285 (643)
.++.+..++|+.+. ......+. +.++|+|+||++|.+++. .+....+++|||||||+|+.
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~ 226 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYL 226 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhhHHHh
Confidence 88888888877542 12223333 468999999999999876 34556799999999999986
Q ss_pred CChH-HHHHHHHHHCCC------------------------CceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCC
Q 006500 286 LGFS-AEIHELVRLCPK------------------------RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPS 340 (643)
Q Consensus 286 ~g~~-~~~~~i~~~~~~------------------------~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 340 (643)
.||. ..+..++..++. .+|+++||||+++..... ..+..+..+.+........
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--~l~~~ll~~~v~~~~~~~r 304 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--KLFRELLGFEVGSPVFYLR 304 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--HHhhccceEEecCcccccC
Confidence 6784 667777777654 689999999998752221 2233444444433333445
Q ss_pred CceEEEEEEechhhhhHHHHHHHHhhccCCceEEEEeCCHHH---HHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhh
Q 006500 341 TLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA---AHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417 (643)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~---~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~ 417 (643)
++.+.++... .+...+..++... +.++||||++... ++.++.+|...|+++..+||+| .+.++.|+
T Consensus 305 nI~~~yi~~~-----~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~ 373 (1176)
T PRK09401 305 NIVDSYIVDE-----DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE 373 (1176)
T ss_pred CceEEEEEcc-----cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH
Confidence 6666665432 2444555555544 4689999999777 9999999999999999999999 23469999
Q ss_pred cCCceEEEe----cccccccCCCCC-ccEEEecCCCC
Q 006500 418 KQHVDFLIA----TDVAARGLDIIG-VQTVINYACPR 449 (643)
Q Consensus 418 ~g~~~vLva----T~~~~~GlDi~~-v~~VI~~d~p~ 449 (643)
+|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 374 ~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 374 EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 999999999 699999999999 89999999997
No 50
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.2e-41 Score=370.38 Aligned_cols=338 Identities=24% Similarity=0.310 Sum_probs=273.2
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCC--CCCCCeEEEEEcCcHHH
Q 006500 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRIPAIRVLILTPTREL 208 (643)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~~vLil~Ptr~L 208 (643)
-|++.+.+.+... |..|||.|..+||.+..|+|+|+.||||||||+++.+|++..+.... ....+..+|+|+|.|+|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 4788999999888 99999999999999999999999999999999999999999999884 23346889999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccC-ccCCCCeeEEEEeCCchhccCC
Q 006500 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLILDEADRLLELG 287 (643)
Q Consensus 209 a~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~-~~~l~~i~~lVvDEah~l~~~g 287 (643)
...+...+..+....|+.+.+-+|+.+.........++|||+||||+.|.-++.... .-.|.++.+|||||.|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 999999999999999999999999999998888899999999999999987776631 2258999999999999998543
Q ss_pred ----hHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCC--CeEEecCCCCCCCCCceEEEEEEech------hhh
Q 006500 288 ----FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK--PLRLSADPSAKRPSTLTEEVVRIRRM------REV 355 (643)
Q Consensus 288 ----~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 355 (643)
..-.+..+.+..+ ..|.|++|||..+ .....+..... +..+........ ..+. +...... ...
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k~-~~i~--v~~p~~~~~~~~~~~~ 240 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAKK-LEIK--VISPVEDLIYDEELWA 240 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCCc-ceEE--EEecCCccccccchhH
Confidence 2344455666666 8999999999984 44444443333 444433222211 1111 1111110 111
Q ss_pred hHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcC-CceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccC
Q 006500 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA-LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (643)
Q Consensus 356 ~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~-~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 434 (643)
.....+..+.+.+ ..+|||+||+..++.+...|...+ ..+..+||+++...|..+.++|++|+.+++|||..++.||
T Consensus 241 ~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGI 318 (814)
T COG1201 241 ALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGI 318 (814)
T ss_pred HHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcc
Confidence 1223334444443 389999999999999999999887 8999999999999999999999999999999999999999
Q ss_pred CCCCccEEEecCCCCChhHHHHHHhhccc-CCCccEEEEEecc
Q 006500 435 DIIGVQTVINYACPRDLTSYVHRVGRTAR-AGREGYAVTFVTD 476 (643)
Q Consensus 435 Di~~v~~VI~~d~p~s~~~y~Qr~GRagR-~g~~g~~~~l~~~ 476 (643)
|+.+|+.||+|+.|.++...+||+||+|+ .|....++++...
T Consensus 319 DiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 319 DIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999985 6666777777766
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.8e-40 Score=373.00 Aligned_cols=315 Identities=22% Similarity=0.261 Sum_probs=236.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHhcC------CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 006500 137 LRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (643)
Q Consensus 137 ~~~l~~~g~~~~~~~Q~~~i~~~l~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~ 210 (643)
...+..++| .||++|.++++.+..+ .+++++|+||||||++|++|++..+.. +.+++|++||++||.
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~------g~q~lilaPT~~LA~ 324 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA------GYQAALMAPTEILAE 324 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc------CCeEEEEeccHHHHH
Confidence 344466788 4999999999999987 489999999999999999999988742 457999999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCChHHHHH---Hh-cCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccC
Q 006500 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---AL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (643)
Q Consensus 211 Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~---~l-~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~ 286 (643)
|+++.+++++...++++..++|+.+...... .+ .+.++|+|+||+.+.. ...+.++++|||||+|++..
T Consensus 325 Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrfg~- 397 (681)
T PRK10917 325 QHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRFGV- 397 (681)
T ss_pred HHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhhhH-
Confidence 9999999999888999999999988654332 23 3469999999987743 34577899999999998632
Q ss_pred ChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhh
Q 006500 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366 (643)
Q Consensus 287 g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (643)
.....+......+++++||||+.+....+.......+..+...+.. +. .+...+.. ..........+...+
T Consensus 398 ----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~-r~-~i~~~~~~--~~~~~~~~~~i~~~~- 468 (681)
T PRK10917 398 ----EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG-RK-PITTVVIP--DSRRDEVYERIREEI- 468 (681)
T ss_pred ----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC-CC-CcEEEEeC--cccHHHHHHHHHHHH-
Confidence 2222333445568999999998776544433222222222211111 11 22222221 111111112222222
Q ss_pred ccCCceEEEEeCCH--------HHHHHHHHHHhhc--CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCC
Q 006500 367 KTFTSKVIIFSGTK--------QAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (643)
Q Consensus 367 ~~~~~~~LIF~~s~--------~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi 436 (643)
..+.+++|||+.+ ..+..+...|... ++.+..+||.|++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 469 -~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi 547 (681)
T PRK10917 469 -AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV 547 (681)
T ss_pred -HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc
Confidence 3467899999954 3455666666654 5789999999999999999999999999999999999999999
Q ss_pred CCccEEEecCCCC-ChhHHHHHHhhcccCCCccEEEEEec
Q 006500 437 IGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVT 475 (643)
Q Consensus 437 ~~v~~VI~~d~p~-s~~~y~Qr~GRagR~g~~g~~~~l~~ 475 (643)
|++++||+|++|. ....|.||+||+||.|.+|.|++++.
T Consensus 548 p~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 548 PNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999997 57788899999999999999999995
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.6e-40 Score=376.21 Aligned_cols=339 Identities=19% Similarity=0.241 Sum_probs=251.3
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCc
Q 006500 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (643)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Pt 205 (643)
.|++++|++.+++.+...+|. |+++|.++++.+..|+++++++|||||||+++.+++++.+.. +.++||++|+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~------~~k~v~i~P~ 74 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA------GLKSIYIVPL 74 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh------CCcEEEEech
Confidence 467789999999999999997 999999999999999999999999999999999999988753 2469999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhcc
Q 006500 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (643)
Q Consensus 206 r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~ 285 (643)
++||.|+++.+..+.. .++++...+|+...... ....++|+|+||+++..++... ...+.++++|||||||.+.+
T Consensus 75 raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 75 RSLAMEKYEELSRLRS-LGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred HHHHHHHHHHHHHHhh-cCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecchhccC
Confidence 9999999999988643 57888888887654322 2346799999999998877664 34578899999999999987
Q ss_pred CChHHHHHHHH---HHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEe----chhhhhHH
Q 006500 286 LGFSAEIHELV---RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR----RMREVNQE 358 (643)
Q Consensus 286 ~g~~~~~~~i~---~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 358 (643)
.++...+..++ ...+...|+|++|||+++ ..++... +..+. + ....++..+........ ........
T Consensus 150 ~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~w-l~~~~-~---~~~~r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 150 EDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQW-LNASL-I---KSNFRPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred CCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHH-hCCCc-c---CCCCCCCCeEEEEEecCeeeecccccccc
Confidence 77666666554 445678899999999975 3444433 22211 0 01112222221111000 00000000
Q ss_pred HHHHHHhh--ccCCceEEEEeCCHHHHHHHHHHHhhc-------------------------CCceEEccCCCCHHHHHH
Q 006500 359 AVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLA-------------------------ALKAAELHGNLTQAQRLE 411 (643)
Q Consensus 359 ~~l~~~~~--~~~~~~~LIF~~s~~~~~~l~~~L~~~-------------------------~~~~~~lh~~~~~~~R~~ 411 (643)
.+..++. ...++++||||+++..++.++..|... ...++++||+|++.+|..
T Consensus 224 -~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 224 -DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred -cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 0111111 124679999999999999998887542 124788999999999999
Q ss_pred HHHHhhcCCceEEEecccccccCCCCCccEEEecCC---------CCChhHHHHHHhhcccCCC--ccEEEEEeccCc-H
Q 006500 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC---------PRDLTSYVHRVGRTARAGR--EGYAVTFVTDND-R 479 (643)
Q Consensus 412 ~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~---------p~s~~~y~Qr~GRagR~g~--~g~~~~l~~~~d-~ 479 (643)
+++.|++|..+|||||+++++|+|+|+.. ||+++. |.++.+|.||+|||||.|. .|.+++++...+ .
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~ 381 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY 381 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccH
Confidence 99999999999999999999999999864 555443 4578899999999999884 677888765443 3
Q ss_pred HHHHH
Q 006500 480 SLLKA 484 (643)
Q Consensus 480 ~~l~~ 484 (643)
..++.
T Consensus 382 ~~~~~ 386 (674)
T PRK01172 382 DAAKK 386 (674)
T ss_pred HHHHH
Confidence 33333
No 53
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.3e-40 Score=365.97 Aligned_cols=319 Identities=19% Similarity=0.188 Sum_probs=234.1
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCCchhHHH---------hHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006500 150 PIQAACIPLALTGRDICGSAITGSGKTAA---------FALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (643)
Q Consensus 150 ~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~---------~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~ 220 (643)
.+|.++++.++.|+++|++|+||||||++ |++|.+..+..-.......+++|++|||+||.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999997 334444443211111234579999999999999999988765
Q ss_pred hc---CCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHH
Q 006500 221 QF---TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297 (643)
Q Consensus 221 ~~---~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~ 297 (643)
++ .+..+.+.+||.... .........+|+|+|++.. ...+..+++|||||||++...+ +.+..++.
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk 315 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVAR 315 (675)
T ss_pred CccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHHHH
Confidence 44 467788899997632 2222333679999997631 1247789999999999998765 34445554
Q ss_pred HC-CCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEech-------hhhhHHHHHHHHhhc--
Q 006500 298 LC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM-------REVNQEAVLLSLCSK-- 367 (643)
Q Consensus 298 ~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~-- 367 (643)
.. ++.+|+++||||++.++..+ ..++.+|..+.+... ....+.+.++..... ....+...+..+...
T Consensus 316 ~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~ 392 (675)
T PHA02653 316 KHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTP 392 (675)
T ss_pred HhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhc
Confidence 33 34469999999999888776 567778877766321 223344444322110 011122222222221
Q ss_pred cCCceEEEEeCCHHHHHHHHHHHhhc--CCceEEccCCCCHHHHHHHHHHh-hcCCceEEEecccccccCCCCCccEEEe
Q 006500 368 TFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELF-RKQHVDFLIATDVAARGLDIIGVQTVIN 444 (643)
Q Consensus 368 ~~~~~~LIF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~l~~F-~~g~~~vLvaT~~~~~GlDi~~v~~VI~ 444 (643)
..++.+|||++++..++.+...|... ++.+..|||+|++. .++++.| ++|+.+|||||++|+||||||+|++||+
T Consensus 393 ~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 393 PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEE
Confidence 23468999999999999999999877 79999999999985 4667777 6899999999999999999999999999
Q ss_pred cC---CCC---------ChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHH
Q 006500 445 YA---CPR---------DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485 (643)
Q Consensus 445 ~d---~p~---------s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i 485 (643)
+| .|. |..+|+||+|||||. ++|.|+.|+++.+...+..+
T Consensus 471 ~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 471 TGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred CCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 99 665 788999999999998 79999999998775333333
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=4.6e-40 Score=384.60 Aligned_cols=303 Identities=22% Similarity=0.310 Sum_probs=227.0
Q ss_pred EEcCCCchhHHHhHHhHHHHHhcCCC-------CCCCeEEEEEcCcHHHHHHHHHHHHHHh------------hcCCceE
Q 006500 167 GSAITGSGKTAAFALPTLERLLYRPK-------RIPAIRVLILTPTRELAVQVHSMIEKIA------------QFTDIRC 227 (643)
Q Consensus 167 ~~a~TGsGKT~~~~l~~l~~l~~~~~-------~~~~~~vLil~Ptr~La~Q~~~~~~~l~------------~~~~~~v 227 (643)
|++|||||||++|.+|+|.+++.... ...++++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999986431 1235789999999999999999887521 1247899
Q ss_pred EEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccC--C--hHHHHHHHHHHCCCCc
Q 006500 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL--G--FSAEIHELVRLCPKRR 303 (643)
Q Consensus 228 ~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~--g--~~~~~~~i~~~~~~~~ 303 (643)
...+|+.+...+...++..++|+|+||++|..+|.+.....++++++|||||+|.|.+. | +...+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999888777778889999999999998876543346899999999999999864 3 4456667777788889
Q ss_pred eeEEEeeccchhHHHHHHHhc-CCCeEEecCCCCCCCCCceEEEEEEechhh------------------hhHHHHHHHH
Q 006500 304 QTMLFSATLTEDVDELIKLSL-TKPLRLSADPSAKRPSTLTEEVVRIRRMRE------------------VNQEAVLLSL 364 (643)
Q Consensus 304 q~i~~SAT~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~l~~~ 364 (643)
|+|+||||+++ ..++..... ..|+.+.. ....+...+. .++....... .........+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 445544332 23555432 2222222222 1111111000 0000111111
Q ss_pred hh-ccCCceEEEEeCCHHHHHHHHHHHhhcC---------------------------------CceEEccCCCCHHHHH
Q 006500 365 CS-KTFTSKVIIFSGTKQAAHRLKILFGLAA---------------------------------LKAAELHGNLTQAQRL 410 (643)
Q Consensus 365 ~~-~~~~~~~LIF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~lh~~~~~~~R~ 410 (643)
+. ...+.++||||||+..++.++..|+... +.+..+||+|++.+|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 11 1235689999999999999999887531 1256899999999999
Q ss_pred HHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccC-CCccEEEE
Q 006500 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVT 472 (643)
Q Consensus 411 ~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~-g~~g~~~~ 472 (643)
.+.+.|++|+.++||||+.+++||||+.|++||+|+.|.++.+|+||+||+||. |..+.+++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli 380 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLF 380 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEE
Confidence 999999999999999999999999999999999999999999999999999995 33444553
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=7.9e-40 Score=367.18 Aligned_cols=317 Identities=21% Similarity=0.253 Sum_probs=234.6
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcC------CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 135 PLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 135 ~l~~~l~~~g~~~~~~~Q~~~i~~~l~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
.+.+.+..++| .||++|.++|+.++.+ .+.+++|+||||||++|++|++..+.. +.+++|++||++|
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~------g~qvlilaPT~~L 296 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA------GYQVALMAPTEIL 296 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc------CCcEEEECCHHHH
Confidence 34566788899 6999999999999986 268999999999999999999988743 4569999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecCCChHHHHH---Hh-cCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc
Q 006500 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---AL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (643)
Q Consensus 209 a~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~---~l-~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~ 284 (643)
|.|+++.+.+++...++++.+++|+.+...... .+ .+.++|+|+||+.+.+ ...+.++++|||||+|++.
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhcc
Confidence 999999999998888999999999987655322 22 3468999999988753 3557889999999999853
Q ss_pred cCChHHHHHHHHHHCC--CCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHH
Q 006500 285 ELGFSAEIHELVRLCP--KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (643)
Q Consensus 285 ~~g~~~~~~~i~~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (643)
. . ....+..... ..+++++||||+.+....+..........+...+.. + ..+...+.. . ......+.
T Consensus 371 ~---~-qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~-r-~~i~~~~~~--~---~~~~~~~~ 439 (630)
T TIGR00643 371 V---E-QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPG-R-KPITTVLIK--H---DEKDIVYE 439 (630)
T ss_pred H---H-HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCC-C-CceEEEEeC--c---chHHHHHH
Confidence 2 1 1122333332 267899999998765443322111111111111111 1 112222211 1 11122222
Q ss_pred HHhhc-cCCceEEEEeCCH--------HHHHHHHHHHhh--cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEeccccc
Q 006500 363 SLCSK-TFTSKVIIFSGTK--------QAAHRLKILFGL--AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (643)
Q Consensus 363 ~~~~~-~~~~~~LIF~~s~--------~~~~~l~~~L~~--~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~ 431 (643)
.+... ..+..++|||+.. ..+..+...|.. .++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 440 ~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 519 (630)
T TIGR00643 440 FIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE 519 (630)
T ss_pred HHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee
Confidence 22221 2357899999875 445566666654 478899999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEecCCCC-ChhHHHHHHhhcccCCCccEEEEEec
Q 006500 432 RGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVT 475 (643)
Q Consensus 432 ~GlDi~~v~~VI~~d~p~-s~~~y~Qr~GRagR~g~~g~~~~l~~ 475 (643)
+|+|+|++++||+|+.|. +...|.||+||+||.|.+|.|++++.
T Consensus 520 ~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999999999997 67888899999999999999999983
No 56
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.4e-39 Score=366.10 Aligned_cols=309 Identities=18% Similarity=0.233 Sum_probs=236.2
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH-HhhcCCceEE
Q 006500 150 PIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCC 228 (643)
Q Consensus 150 ~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~-l~~~~~~~v~ 228 (643)
.+-.+++..+.+++++|++|+||||||++|.+++++... .+++++|++|||++|.|+++.+.. +....+..|+
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 344566777778899999999999999999999998762 234799999999999999998854 3334566777
Q ss_pred EEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCc-hhccCChHHH-HHHHHHHCCCCceeE
Q 006500 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSAE-IHELVRLCPKRRQTM 306 (643)
Q Consensus 229 ~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah-~l~~~g~~~~-~~~i~~~~~~~~q~i 306 (643)
+.+++.+ .....++|+|+|||+|++.+.+ ...++++++|||||+| ++++.++... +..+...++...|+|
T Consensus 79 y~vr~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 79 YRVRGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEcccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 6666532 2345689999999999999876 4578999999999999 5777665433 345666678889999
Q ss_pred EEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhh--HHHHHHHHhhccCCceEEEEeCCHHHHH
Q 006500 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN--QEAVLLSLCSKTFTSKVIIFSGTKQAAH 384 (643)
Q Consensus 307 ~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~LIF~~s~~~~~ 384 (643)
+||||++... ...++.++..+.... +...+.+.+.......... ....+..++.. ..+.+|||+++...++
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~g---r~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEG---RSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIR 223 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecC---cceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHH
Confidence 9999998654 244555544444322 1112333333322111100 11223333333 3578999999999999
Q ss_pred HHHHHHhh---cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCC-----------
Q 006500 385 RLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD----------- 450 (643)
Q Consensus 385 ~l~~~L~~---~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s----------- 450 (643)
.+...|.. .++.+..|||+|++.+|..+++.|++|..+||||||++++|||||+|++||++++|..
T Consensus 224 ~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~ 303 (819)
T TIGR01970 224 RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITR 303 (819)
T ss_pred HHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCce
Confidence 99999986 4789999999999999999999999999999999999999999999999999999863
Q ss_pred -------hhHHHHHHhhcccCCCccEEEEEeccCcHH
Q 006500 451 -------LTSYVHRVGRTARAGREGYAVTFVTDNDRS 480 (643)
Q Consensus 451 -------~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~ 480 (643)
..+|+||+|||||. ++|.||.|+++.+..
T Consensus 304 L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 304 LETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred eeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 34689999999998 799999999987643
No 57
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-40 Score=327.92 Aligned_cols=293 Identities=33% Similarity=0.463 Sum_probs=235.4
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhc---CCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCC
Q 006500 195 PAIRVLILTPTRELAVQVHSMIEKIAQF---TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (643)
Q Consensus 195 ~~~~vLil~Ptr~La~Q~~~~~~~l~~~---~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~ 271 (643)
+.|.++|+-|.|+|+.|.++.+++|-.+ +.++..++.||.....+...+..+.+|+|+||+||.+.+... .+.+..
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g-~~~lt~ 363 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG-LVTLTH 363 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc-ceeeee
Confidence 3578999999999999999977776443 456667889998888899999999999999999999988775 567889
Q ss_pred eeEEEEeCCchhccCChHHHHHHHHHHCC------CCceeEEEeeccch-hHHHHHHHhcCCCeEEecCCCCCCCCCceE
Q 006500 272 LAVLILDEADRLLELGFSAEIHELVRLCP------KRRQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTE 344 (643)
Q Consensus 272 i~~lVvDEah~l~~~g~~~~~~~i~~~~~------~~~q~i~~SAT~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 344 (643)
..++|+|||+.++..|+.+.|..+...+| ...|.++.|||+.. ++..+....++-|..+........|....+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 99999999999999999999988877776 35799999999973 444555566777777776666555555544
Q ss_pred EEEEEechhh-------------------------------hhHH-----HHHHHHhhccCCceEEEEeCCHHHHHHHHH
Q 006500 345 EVVRIRRMRE-------------------------------VNQE-----AVLLSLCSKTFTSKVIIFSGTKQAAHRLKI 388 (643)
Q Consensus 345 ~~~~~~~~~~-------------------------------~~~~-----~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~ 388 (643)
....+.+... .... ++-...+++..-.+.||||.|+..|+.|..
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 4332211000 0000 001112234445789999999999999999
Q ss_pred HHhhcC---CceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCC
Q 006500 389 LFGLAA---LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465 (643)
Q Consensus 389 ~L~~~~---~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g 465 (643)
+|.+.| ++|.++||+..+.+|...++.|+.+.+++||||++++|||||.++-+|||..+|.....|+||+||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 998874 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEeccCcHHHHHHHHHH
Q 006500 466 REGYAVTFVTDNDRSLLKAIAKR 488 (643)
Q Consensus 466 ~~g~~~~l~~~~d~~~l~~i~~~ 488 (643)
+-|.+|+++...-.+.+...-+.
T Consensus 604 rmglaislvat~~ekvwyh~c~s 626 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHWCKS 626 (725)
T ss_pred hcceeEEEeeccchheeehhhhc
Confidence 99999999987665655554443
No 58
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.4e-38 Score=372.20 Aligned_cols=292 Identities=23% Similarity=0.281 Sum_probs=219.3
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHH
Q 006500 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (643)
Q Consensus 135 ~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~ 214 (643)
.+.+.+.......|+++|+.++|.++.|+|++++||||||||+ |.+|++..+... ++++|||+||++||.|+++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~-----g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK-----GKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc-----CCeEEEEeCHHHHHHHHHH
Confidence 3444454434447999999999999999999999999999997 677777665432 4679999999999999999
Q ss_pred HHHHHhhcCCceEE---EEecCCChHHHHH---Hhc-CCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhcc--
Q 006500 215 MIEKIAQFTDIRCC---LVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-- 285 (643)
Q Consensus 215 ~~~~l~~~~~~~v~---~~~g~~~~~~~~~---~l~-~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~-- 285 (643)
.+..++...++.+. .++|+.+...+.. .+. +.++|+|+||++|.+++.... . .++++||||||+|+.
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---P-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---C-CCCEEEEeChHhhhhcc
Confidence 99999887666543 4678877665432 233 459999999999998876521 2 789999999999997
Q ss_pred ---------CChHHH-HHHH----------------------HHHCCCCce--eEEEeecc-chhHHHHHHHhcCCCeEE
Q 006500 286 ---------LGFSAE-IHEL----------------------VRLCPKRRQ--TMLFSATL-TEDVDELIKLSLTKPLRL 330 (643)
Q Consensus 286 ---------~g~~~~-~~~i----------------------~~~~~~~~q--~i~~SAT~-~~~~~~~~~~~~~~p~~~ 330 (643)
+||... +..+ ++.+++.+| ++++|||+ +..+.. .++..+..+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccce
Confidence 678653 3333 233455555 56789994 443322 334455555
Q ss_pred ecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhccCCceEEEEeCCH---HHHHHHHHHHhhcCCceEEccCCCCHH
Q 006500 331 SADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTK---QAAHRLKILFGLAALKAAELHGNLTQA 407 (643)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~---~~~~~l~~~L~~~~~~~~~lh~~~~~~ 407 (643)
.+........++.+.++.... ....+..++... +.++||||+++ +.++.++.+|...|+++..+||++++
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~-----~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED-----LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred EecCccccccceEEEEEeccc-----HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 554443334456665543221 123344455443 46899999999 99999999999999999999999974
Q ss_pred HHHHHHHHhhcCCceEEEe----cccccccCCCCC-ccEEEecCCCC
Q 006500 408 QRLEALELFRKQHVDFLIA----TDVAARGLDIIG-VQTVINYACPR 449 (643)
Q Consensus 408 ~R~~~l~~F~~g~~~vLva----T~~~~~GlDi~~-v~~VI~~d~p~ 449 (643)
.+++.|++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 599999999999 89999999884
No 59
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.8e-39 Score=326.45 Aligned_cols=327 Identities=26% Similarity=0.346 Sum_probs=241.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 006500 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (643)
Q Consensus 145 ~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~ 224 (643)
.-.++.||......++.+ |++++.|||.|||+++++.+...+.+.+ + ++|+|+||+.|+.|.++.+.++...+.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~----~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG----G-KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC----C-eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 346889999998888776 8999999999999998888887775532 3 799999999999999999999988888
Q ss_pred ceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc-cCChHHHHHHHHHHCCCCc
Q 006500 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRR 303 (643)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~-~~g~~~~~~~i~~~~~~~~ 303 (643)
-.++.++|..++..... .+...+|+|+||+.+.+-|..+ .+++.++.++|+||||+-. +..+......+++. .+++
T Consensus 87 ~~i~~ltGev~p~~R~~-~w~~~kVfvaTPQvveNDl~~G-rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-~k~~ 163 (542)
T COG1111 87 DEIAALTGEVRPEEREE-LWAKKKVFVATPQVVENDLKAG-RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-AKNP 163 (542)
T ss_pred hheeeecCCCChHHHHH-HHhhCCEEEeccHHHHhHHhcC-ccChHHceEEEechhhhccCcchHHHHHHHHHHh-ccCc
Confidence 88999999988876544 4556799999999999888775 6889999999999999976 44444444444443 4667
Q ss_pred eeEEEeeccchhHHHHHHHh--cC-CCeEE--------------------------------------------------
Q 006500 304 QTMLFSATLTEDVDELIKLS--LT-KPLRL-------------------------------------------------- 330 (643)
Q Consensus 304 q~i~~SAT~~~~~~~~~~~~--~~-~p~~~-------------------------------------------------- 330 (643)
.++++||||..+...+.... ++ ..+.+
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999975433321000 00 00000
Q ss_pred ---ecCCCCC------------CCCCceEE--------------------------------EE------EEec------
Q 006500 331 ---SADPSAK------------RPSTLTEE--------------------------------VV------RIRR------ 351 (643)
Q Consensus 331 ---~~~~~~~------------~~~~~~~~--------------------------------~~------~~~~------ 351 (643)
...+... ........ +. ....
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 0000000 00000000 00 0000
Q ss_pred --------------------hhhhhHHHH----HHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceE-Ec------
Q 006500 352 --------------------MREVNQEAV----LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA-EL------ 400 (643)
Q Consensus 352 --------------------~~~~~~~~~----l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~-~l------ 400 (643)
.....+... +...+.+..+.++|||++.+.+++.+.++|...+..+. .+
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 000001111 12223345567999999999999999999999988774 32
Q ss_pred --cCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCc
Q 006500 401 --HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (643)
Q Consensus 401 --h~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d 478 (643)
..||+|.++.++++.|++|.++|||||+++++|||||.++.||+|++-.|+..++||.||||| ++.|.+++|++.++
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR-~r~Grv~vLvt~gt 482 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR-KRKGRVVVLVTEGT 482 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc-CCCCeEEEEEecCc
Confidence 247999999999999999999999999999999999999999999999999999999999999 58999999999986
Q ss_pred HHH
Q 006500 479 RSL 481 (643)
Q Consensus 479 ~~~ 481 (643)
+..
T Consensus 483 rde 485 (542)
T COG1111 483 RDE 485 (542)
T ss_pred hHH
Confidence 543
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.7e-39 Score=364.07 Aligned_cols=307 Identities=17% Similarity=0.231 Sum_probs=233.8
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH-HhhcCCceEEE
Q 006500 151 IQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCL 229 (643)
Q Consensus 151 ~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~-l~~~~~~~v~~ 229 (643)
+-.+++..+.+++++++.|+||||||++|.+++++... ..+++||++|||++|.|+++.+.. +....+..+++
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 33456677778899999999999999999999997642 124799999999999999998854 44446778888
Q ss_pred EecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCch-hccCChH-HHHHHHHHHCCCCceeEE
Q 006500 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGFS-AEIHELVRLCPKRRQTML 307 (643)
Q Consensus 230 ~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~-l~~~g~~-~~~~~i~~~~~~~~q~i~ 307 (643)
.+++.+. ....++|+|+|||+|++++.. ...++++++|||||+|. .++.++. ..+..++..++...|+|+
T Consensus 83 ~vr~~~~------~~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 83 RMRAESK------VGPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred EecCccc------cCCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 7776432 234568999999999998876 45789999999999997 4554432 334456677788899999
Q ss_pred EeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhH--HHHHHHHhhccCCceEEEEeCCHHHHHH
Q 006500 308 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ--EAVLLSLCSKTFTSKVIIFSGTKQAAHR 385 (643)
Q Consensus 308 ~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~LIF~~s~~~~~~ 385 (643)
||||++... ...++.++..+.... +...+.+.+........... ...+..++.. ..+.+|||++++..++.
T Consensus 155 mSATl~~~~---l~~~~~~~~~I~~~g---r~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~ 227 (812)
T PRK11664 155 MSATLDNDR---LQQLLPDAPVIVSEG---RSFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQR 227 (812)
T ss_pred EecCCCHHH---HHHhcCCCCEEEecC---ccccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHH
Confidence 999998642 234555444444322 11224444433221111100 1123333332 35789999999999999
Q ss_pred HHHHHhh---cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCC------------
Q 006500 386 LKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD------------ 450 (643)
Q Consensus 386 l~~~L~~---~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s------------ 450 (643)
+...|.. .++.+..+||+|++.+|..++..|++|+.+|||||+++++|||||+|++||+++++..
T Consensus 228 l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L 307 (812)
T PRK11664 228 VQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRL 307 (812)
T ss_pred HHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCccee
Confidence 9999986 5788999999999999999999999999999999999999999999999999888753
Q ss_pred ------hhHHHHHHhhcccCCCccEEEEEeccCcH
Q 006500 451 ------LTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (643)
Q Consensus 451 ------~~~y~Qr~GRagR~g~~g~~~~l~~~~d~ 479 (643)
-.+|+||+|||||. ++|.||.|+++.+.
T Consensus 308 ~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 308 VTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred EEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 35799999999997 69999999998654
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=7.3e-39 Score=381.19 Aligned_cols=331 Identities=21% Similarity=0.245 Sum_probs=252.7
Q ss_pred HHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHH
Q 006500 135 PLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213 (643)
Q Consensus 135 ~l~~~l~~-~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~ 213 (643)
.+.+.+.. +|| .|+++|+.++|.++.|+|+++.||||||||++++++++.... .+.++|||+||++|+.|++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------~g~~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------KGKKCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------cCCeEEEEECHHHHHHHHH
Confidence 44455554 899 699999999999999999999999999999965555543321 2457999999999999999
Q ss_pred HHHHHHhhcC--CceEEEEecCCChHHHHH---Hhc-CCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhcc--
Q 006500 214 SMIEKIAQFT--DIRCCLVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-- 285 (643)
Q Consensus 214 ~~~~~l~~~~--~~~v~~~~g~~~~~~~~~---~l~-~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~-- 285 (643)
+.++.++... ++++..++|+.+...+.. .+. +.++|+|+||++|.+++... . ...++++||||||+|+.
T Consensus 140 ~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 140 EKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceeccccc
Confidence 9999998764 467778889988765532 233 45899999999998876542 1 26789999999999987
Q ss_pred ---------CChHHHHHH----HHH----------------------HCCCCce-eEEEeeccchhHHHHHHHhcCCCeE
Q 006500 286 ---------LGFSAEIHE----LVR----------------------LCPKRRQ-TMLFSATLTEDVDELIKLSLTKPLR 329 (643)
Q Consensus 286 ---------~g~~~~~~~----i~~----------------------~~~~~~q-~i~~SAT~~~~~~~~~~~~~~~p~~ 329 (643)
.||...+.. +++ .+|+.+| ++++|||+++... .. ..+..+..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~~-~l~~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-RV-KLYRELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-HH-HHhhcCeE
Confidence 478777754 322 2355566 5779999986411 12 23456666
Q ss_pred EecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhccCCceEEEEeCCHHH---HHHHHHHHhhcCCceEEccCCCCH
Q 006500 330 LSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA---AHRLKILFGLAALKAAELHGNLTQ 406 (643)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~---~~~l~~~L~~~~~~~~~lh~~~~~ 406 (643)
+.+.........+.+.++..... .+ ..+..++... +.++||||+++.. ++.++.+|...|+++..+||+
T Consensus 295 f~v~~~~~~lr~i~~~yi~~~~~---~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNPEKI---IK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEecCCCCCCCCcEEEEEECCHH---HH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 66654444445666666543221 12 3455555544 5689999999875 589999999999999999995
Q ss_pred HHHHHHHHHhhcCCceEEEec----ccccccCCCCC-ccEEEecCCCC---ChhHHHHHH-------------hhcccCC
Q 006500 407 AQRLEALELFRKQHVDFLIAT----DVAARGLDIIG-VQTVINYACPR---DLTSYVHRV-------------GRTARAG 465 (643)
Q Consensus 407 ~~R~~~l~~F~~g~~~vLvaT----~~~~~GlDi~~-v~~VI~~d~p~---s~~~y~Qr~-------------GRagR~g 465 (643)
|..+++.|++|+.+||||| ++++||||+|+ |++|||||+|. +...|.|.. ||+||.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8899999999999999999 58999999999 99999999999 888777665 9999999
Q ss_pred CccEEEEEeccCcHHHHHHHHH
Q 006500 466 REGYAVTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 466 ~~g~~~~l~~~~d~~~l~~i~~ 487 (643)
.++.+++.+...+...++.+.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~l~ 466 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLRSILK 466 (1638)
T ss_pred CcchhHHHhHHHHHHHHHHHhc
Confidence 8888887777777666665543
No 62
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.7e-39 Score=317.06 Aligned_cols=334 Identities=22% Similarity=0.329 Sum_probs=256.4
Q ss_pred HHHHHHHH-CCCCCC-CHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 006500 135 PLLRACEA-LGYSKP-TPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (643)
Q Consensus 135 ~l~~~l~~-~g~~~~-~~~Q~~~i~~~l~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q 211 (643)
.+.++|+. +|+.++ ++.|..++..+..+ +||.+++|||+||+++|+||.|-+ +.-+||+.|..+|...
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------~gITIV~SPLiALIkD 76 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------GGITIVISPLIALIKD 76 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------CCeEEEehHHHHHHHH
Confidence 45566644 677665 79999999999886 699999999999999999999854 2258999999999887
Q ss_pred HHHHHHHHhhcCCceEEEEecCCChHHHHHHh------cCCCcEEEECchhH-----HHHHhccCccCCCCeeEEEEeCC
Q 006500 212 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL------RSMPDIVVATPGRM-----IDHLRNSMSVDLDDLAVLILDEA 280 (643)
Q Consensus 212 ~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l------~~~~~Ivv~Tp~~L-----~~~l~~~~~~~l~~i~~lVvDEa 280 (643)
..+.+..+ .+++..+.+-.+..+....+ +....+++.||+.- ...|.. -.+-..+.++|||||
T Consensus 77 QiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 77 QIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechh
Confidence 77777764 56666666666655443332 44578999999863 222221 112345789999999
Q ss_pred chhccCC--hHHHHHHHHHH--CCCCceeEEEeeccchhHHHHH--HHhcCCCeEEecCCCCCCCCCceEEEEEEec-hh
Q 006500 281 DRLLELG--FSAEIHELVRL--CPKRRQTMLFSATLTEDVDELI--KLSLTKPLRLSADPSAKRPSTLTEEVVRIRR-MR 353 (643)
Q Consensus 281 h~l~~~g--~~~~~~~i~~~--~~~~~q~i~~SAT~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~ 353 (643)
|++.+|| |++.+..+... .-....-+.+|||.++.+.+.+ .+.+++|+.+...+.... ..|+.+.. ..
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~-----NLFYD~~~K~~ 225 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRD-----NLFYDNHMKSF 225 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhh-----hhhHHHHHHHH
Confidence 9999999 77777766433 2345667999999999998865 567788887765433221 11111100 00
Q ss_pred hhhHHHHHHHHhh-------------ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCC
Q 006500 354 EVNQEAVLLSLCS-------------KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (643)
Q Consensus 354 ~~~~~~~l~~~~~-------------~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~ 420 (643)
..+....|..++. +...+-.||||.|++.+++++..|...|+++..+|.++...+|..+.+.|.+|+
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 1112223333332 222356899999999999999999999999999999999999999999999999
Q ss_pred ceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHH
Q 006500 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (643)
Q Consensus 421 ~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~ 488 (643)
..|++||..+++|+|-|+|++|||+++|.|...|.|-.|||||.|.+.+|.+|++..|+..+..+.+.
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998888776654
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.5e-37 Score=333.64 Aligned_cols=321 Identities=23% Similarity=0.229 Sum_probs=244.3
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
+|. .|+++|..++|.++.|+ |+.+.||+|||++|.+|++.+.+. ++.++|++||++||.|.++++..++.+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~------G~~v~VvTptreLA~qdae~~~~l~~~ 170 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA------GLPVHVITVNDYLAERDAELMRPLYEA 170 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc------CCeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 466 59999999999999999 999999999999999999988653 446999999999999999999999999
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhH-HHHHhccCc------------------------cCCCCeeEEEE
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS------------------------VDLDDLAVLIL 277 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~~~------------------------~~l~~i~~lVv 277 (643)
.++++++++|+.+.. .......+||+|+|...| .++|+.... .-...+.++||
T Consensus 171 lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 171 LGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred cCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 999999999997653 444567899999998877 455544311 12356789999
Q ss_pred eCCchhc-c--------------C---ChHHHHHHHHHHC--------------------------------C-------
Q 006500 278 DEADRLL-E--------------L---GFSAEIHELVRLC--------------------------------P------- 300 (643)
Q Consensus 278 DEah~l~-~--------------~---g~~~~~~~i~~~~--------------------------------~------- 300 (643)
||+|.++ + . .+...+..+...+ +
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999843 1 0 0000000000000 0
Q ss_pred -----------------C-------------------------------------------------------------C
Q 006500 301 -----------------K-------------------------------------------------------------R 302 (643)
Q Consensus 301 -----------------~-------------------------------------------------------------~ 302 (643)
+ -
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 0 0
Q ss_pred ceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhcc--CCceEEEEeCCH
Q 006500 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT--FTSKVIIFSGTK 380 (643)
Q Consensus 303 ~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~LIF~~s~ 380 (643)
.++.+||||++....++...+...++.+.......+. ..+.++.+. ...+...+..++... .+.++||||+|+
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~--~~~~~v~~t---~~~K~~aL~~~i~~~~~~~~pvLIft~t~ 483 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRR--HLPDEVFLT---AAAKWAAVAARVRELHAQGRPVLVGTRSV 483 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccce--ecCCEEEeC---HHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 2568999999988888888888777776654333221 222223222 234555565555432 256899999999
Q ss_pred HHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCC---Ccc-----EEEecCCCCChh
Q 006500 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---GVQ-----TVINYACPRDLT 452 (643)
Q Consensus 381 ~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~---~v~-----~VI~~d~p~s~~ 452 (643)
..++.++..|...|+++..|||.++ +|...+..|..+...|+|||++++||+||+ +|. +||+|++|.|..
T Consensus 484 ~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r 561 (656)
T PRK12898 484 AASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSAR 561 (656)
T ss_pred HHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHH
Confidence 9999999999999999999999865 455555566666667999999999999999 676 999999999999
Q ss_pred HHHHHHhhcccCCCccEEEEEeccCcHHH
Q 006500 453 SYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (643)
Q Consensus 453 ~y~Qr~GRagR~g~~g~~~~l~~~~d~~~ 481 (643)
.|+||+|||||.|.+|.+++|++..|.-+
T Consensus 562 ~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 562 IDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred HHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 99999999999999999999999877433
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.4e-36 Score=334.22 Aligned_cols=322 Identities=20% Similarity=0.240 Sum_probs=236.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
+|. .|+++|..+++.++.|+ |+.+.||+|||++|++|++...+. +..++|++||+.||.|.++++..+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~------G~~v~VvTpt~~LA~qd~e~~~~l~~~ 145 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE------GKGVHLITVNDYLAKRDAEEMGQVYEF 145 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc------CCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 576 69999999999998887 999999999999999999866553 345999999999999999999999999
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhH-HHHHhccC-----ccCCCCeeEEEEeCCchhc-cC--------C
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-EL--------G 287 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~l~-~~--------g 287 (643)
.++++++++|+.+...+.. ....++|+|+||++| .++|.... ...+..+.++||||||.|+ +. |
T Consensus 146 lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg 224 (790)
T PRK09200 146 LGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISG 224 (790)
T ss_pred cCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeC
Confidence 9999999999987322222 345699999999999 55554421 2356788999999999954 10 0
Q ss_pred -------hHHHHHHHHHHCCC-----------------------------------------------------------
Q 006500 288 -------FSAEIHELVRLCPK----------------------------------------------------------- 301 (643)
Q Consensus 288 -------~~~~~~~i~~~~~~----------------------------------------------------------- 301 (643)
+...+..+...+..
T Consensus 225 ~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~d 304 (790)
T PRK09200 225 KPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVD 304 (790)
T ss_pred CCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCc
Confidence 11111111111100
Q ss_pred ----------------------------------------------------------CceeEEEeeccchhHHHHHHHh
Q 006500 302 ----------------------------------------------------------RRQTMLFSATLTEDVDELIKLS 323 (643)
Q Consensus 302 ----------------------------------------------------------~~q~i~~SAT~~~~~~~~~~~~ 323 (643)
-.++.+||+|....-.++...+
T Consensus 305 YiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y 384 (790)
T PRK09200 305 YIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY 384 (790)
T ss_pred EEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh
Confidence 0145566666655444544433
Q ss_pred cCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhc--cCCceEEEEeCCHHHHHHHHHHHhhcCCceEEcc
Q 006500 324 LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401 (643)
Q Consensus 324 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh 401 (643)
-...+.+ +.. .|......-..+-. ....+...+...+.. ..+.++||||+|+..++.++..|...|+++..||
T Consensus 385 ~l~v~~I---Pt~-kp~~r~d~~~~i~~-~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~ 459 (790)
T PRK09200 385 NMEVVQI---PTN-RPIIRIDYPDKVFV-TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLN 459 (790)
T ss_pred CCcEEEC---CCC-CCcccccCCCeEEc-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEec
Confidence 2222221 111 22111111001111 223455555555533 3567999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCceEEEecccccccCCC---CCcc-----EEEecCCCCChhHHHHHHhhcccCCCccEEEEE
Q 006500 402 GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI---IGVQ-----TVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473 (643)
Q Consensus 402 ~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi---~~v~-----~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l 473 (643)
|.+.+.++..+...+..| .|+|||++++||+|| |+|. +||+|++|.|...|+||+|||||.|.+|.+++|
T Consensus 460 ~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~ 537 (790)
T PRK09200 460 AKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFF 537 (790)
T ss_pred CCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEE
Confidence 999998888888777766 799999999999999 6998 999999999999999999999999999999999
Q ss_pred eccCcHHH
Q 006500 474 VTDNDRSL 481 (643)
Q Consensus 474 ~~~~d~~~ 481 (643)
++..|.-+
T Consensus 538 is~eD~l~ 545 (790)
T PRK09200 538 ISLEDDLL 545 (790)
T ss_pred EcchHHHH
Confidence 99876433
No 65
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=8.8e-37 Score=334.31 Aligned_cols=303 Identities=15% Similarity=0.130 Sum_probs=217.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 006500 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (643)
Q Consensus 145 ~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~ 224 (643)
...|+++|.++++.++.++++++++|||+|||+++.. +...+.... .+++|||+||++|+.||.+.+.++.....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~~----~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLENY----EGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhcC----CCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 3479999999999999999999999999999987543 222222221 23699999999999999999999876555
Q ss_pred ceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCce
Q 006500 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304 (643)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q 304 (643)
..+..+.+|.... ...+|+|+||++|..... ..+.++++|||||||++.... +..++..+++.++
T Consensus 187 ~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~ 251 (501)
T PHA02558 187 EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKF 251 (501)
T ss_pred cceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccchh----HHHHHHhhhccce
Confidence 5555666664321 357999999999976432 236789999999999997643 4566677777789
Q ss_pred eEEEeeccchhHHHHHH--HhcCCCeEEecCCCC----CCCCCceEEEEEEech--------------------hhhhHH
Q 006500 305 TMLFSATLTEDVDELIK--LSLTKPLRLSADPSA----KRPSTLTEEVVRIRRM--------------------REVNQE 358 (643)
Q Consensus 305 ~i~~SAT~~~~~~~~~~--~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~--------------------~~~~~~ 358 (643)
+++||||+......... ..+. |+...+.... .....+....+.+... ....+.
T Consensus 252 ~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn 330 (501)
T PHA02558 252 KFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRN 330 (501)
T ss_pred EEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHH
Confidence 99999999754322111 1111 2222111000 0000000000000000 000111
Q ss_pred HHHHHHhh--ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEec-ccccccCC
Q 006500 359 AVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT-DVAARGLD 435 (643)
Q Consensus 359 ~~l~~~~~--~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT-~~~~~GlD 435 (643)
..+..+.. ...+.++||||.+.+.++.|+..|...++++..+||++++.+|..+++.|++|...||||| +++++|+|
T Consensus 331 ~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 331 KWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 12222221 1235689999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CCCccEEEecCCCCChhHHHHHHhhcccCCCcc
Q 006500 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREG 468 (643)
Q Consensus 436 i~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g 468 (643)
+|++++||++.+|.+...|+||+||++|.+..+
T Consensus 411 ip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 411 IKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 999999999999999999999999999976444
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.7e-35 Score=323.85 Aligned_cols=317 Identities=17% Similarity=0.161 Sum_probs=224.5
Q ss_pred CHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEE
Q 006500 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (643)
Q Consensus 149 ~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~ 228 (643)
+|+|.+++..+..+++.|+.++||+|||++|++|++...+.. ..++|++|++.||.|+++++..++.+.|+++.
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g------~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~ 143 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTG------KGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVS 143 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcC------CceEEeCCCHHHHHHHHHHHHHHHhhcCCcEE
Confidence 444444554444455579999999999999999988776532 34999999999999999999999999999999
Q ss_pred EEecCCC---hHHHHHHhcCCCcEEEECchhH-HHHHhcc-----CccCCCCeeEEEEeCCchhccCC------------
Q 006500 229 LVVGGLS---TKMQETALRSMPDIVVATPGRM-IDHLRNS-----MSVDLDDLAVLILDEADRLLELG------------ 287 (643)
Q Consensus 229 ~~~g~~~---~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~-----~~~~l~~i~~lVvDEah~l~~~g------------ 287 (643)
+++++.. .........+.++|+++||++| .++|... ....+..+.++||||||.|+-..
T Consensus 144 ~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~ 223 (762)
T TIGR03714 144 LGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPR 223 (762)
T ss_pred EEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCc
Confidence 8887622 2222333446799999999999 5555432 23446789999999999964210
Q ss_pred ----hHHHHHHHHHHCCC--------------------------------------------------------------
Q 006500 288 ----FSAEIHELVRLCPK-------------------------------------------------------------- 301 (643)
Q Consensus 288 ----~~~~~~~i~~~~~~-------------------------------------------------------------- 301 (643)
+...+..+...+..
T Consensus 224 ~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV 303 (762)
T TIGR03714 224 VQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVV 303 (762)
T ss_pred cchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 11111111111100
Q ss_pred -------------------------------------------------------CceeEEEeeccchhHHHHHHHhcCC
Q 006500 302 -------------------------------------------------------RRQTMLFSATLTEDVDELIKLSLTK 326 (643)
Q Consensus 302 -------------------------------------------------------~~q~i~~SAT~~~~~~~~~~~~~~~ 326 (643)
-.++.+||+|......++...+-..
T Consensus 304 ~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~ 383 (762)
T TIGR03714 304 TNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLS 383 (762)
T ss_pred ECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCC
Confidence 0245667777655555555433222
Q ss_pred CeEEecCCCCCCCCCceEE--EEEEechhhhhHHHHHHHHhhc--cCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccC
Q 006500 327 PLRLSADPSAKRPSTLTEE--VVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 402 (643)
Q Consensus 327 p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~--~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~ 402 (643)
.+.+. . ..|...... .+.. ....+...+...+.. ..+.++||||+|+..++.+...|...|+++..|||
T Consensus 384 v~~IP---t-~kp~~r~d~~d~i~~---~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 384 VVKIP---T-NKPIIRIDYPDKIYA---TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred EEEcC---C-CCCeeeeeCCCeEEE---CHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 11111 1 112111111 1111 223345555554433 45679999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEecccccccCCCC---------CccEEEecCCCCChhHHHHHHhhcccCCCccEEEEE
Q 006500 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473 (643)
Q Consensus 403 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~---------~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l 473 (643)
.+.+.++..+...|+.| .|+|||++++||+||+ ++.+|++|++|..... +||+|||||.|.+|.+++|
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~ 533 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFF 533 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEE
Confidence 99999988887777766 6999999999999999 9999999999987666 9999999999999999999
Q ss_pred eccCcHHH
Q 006500 474 VTDNDRSL 481 (643)
Q Consensus 474 ~~~~d~~~ 481 (643)
++..|.-+
T Consensus 534 is~eD~l~ 541 (762)
T TIGR03714 534 VSLEDDLI 541 (762)
T ss_pred Eccchhhh
Confidence 99877533
No 67
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=310.58 Aligned_cols=338 Identities=23% Similarity=0.291 Sum_probs=271.8
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc
Q 006500 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
-...+|.+++.+.+.|+..|+..+.|+|..++.. ++.|.|.++..+|+||||++.-++-+.+++.. +.+.|+|+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-----g~KmlfLv 268 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-----GKKMLFLV 268 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-----CCeEEEEe
Confidence 3456789999999999999999999999999976 67899999999999999999889989888764 34699999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHH----HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeC
Q 006500 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~----~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (643)
|..+||+|-++.|+.-....++.+.+-+|-........ .....+||||+|++.+-.+|+.. ..+.+++.|||||
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVVIDE 346 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVVIDE 346 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--CcccccceEEeee
Confidence 99999999999999877778898888888655443321 12345899999999997777663 6789999999999
Q ss_pred CchhccCChHHHHH---HHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhh
Q 006500 280 ADRLLELGFSAEIH---ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (643)
Q Consensus 280 ah~l~~~g~~~~~~---~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (643)
.|.|-+......+. .=++.+-+..|.|.+|||..+. .++++.+-.+++.+. .+|..+...++.++. ...
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-----~RPVplErHlvf~~~--e~e 418 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-----ERPVPLERHLVFARN--ESE 418 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec-----CCCCChhHeeeeecC--chH
Confidence 99887633332222 2234444589999999999754 445555444455443 367777766666653 334
Q ss_pred HHHHHHHHhh--------ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecc
Q 006500 357 QEAVLLSLCS--------KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (643)
Q Consensus 357 ~~~~l~~~~~--------~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~ 428 (643)
+..++..+++ ..+.+.+|||++|+..|+.|+.+|...|+++.++|++|+..+|..+...|.++...++|+|-
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 5555554443 45678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEE---ecCCCC-ChhHHHHHHhhcccCC--CccEEEEEeccC
Q 006500 429 VAARGLDIIGVQTVI---NYACPR-DLTSYVHRVGRTARAG--REGYAVTFVTDN 477 (643)
Q Consensus 429 ~~~~GlDi~~v~~VI---~~d~p~-s~~~y~Qr~GRagR~g--~~g~~~~l~~~~ 477 (643)
+++-|+|+|.-.+|+ -++..| |+..|.|+.|||||.+ ..|++|+++.+.
T Consensus 499 AL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999766554 355666 8999999999999976 469999999875
No 68
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=4.6e-35 Score=320.01 Aligned_cols=321 Identities=20% Similarity=0.219 Sum_probs=238.1
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
+|. .|+++|..+.+.++.|+ |+.++||+|||++|.+|++-..+. +..++|++||+.||.|.++++..+..+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~------G~~V~VvTpt~~LA~qdae~~~~l~~~ 123 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT------GKGVHVVTVNDYLAQRDAEWMGQVYRF 123 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh------CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 465 58999999999888776 999999999999999999544332 224999999999999999999999999
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhH-HHHHhccC-----ccCCCCeeEEEEeCCchhcc---------CC
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLLE---------LG 287 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~l~~---------~g 287 (643)
.++++++++|+.+....... ..++|+|+||++| .++|.... ...+..+.++||||+|+++- .|
T Consensus 124 LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 124 LGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred CCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 99999999999886554433 3589999999999 88887752 24578899999999999542 01
Q ss_pred -------hHHHHHHHHHHCC--------------------------------------------------------C---
Q 006500 288 -------FSAEIHELVRLCP--------------------------------------------------------K--- 301 (643)
Q Consensus 288 -------~~~~~~~i~~~~~--------------------------------------------------------~--- 301 (643)
.......+.+.+. +
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 0000000110000 0
Q ss_pred ----------------------------------------------------------CceeEEEeeccchhHHHHHHHh
Q 006500 302 ----------------------------------------------------------RRQTMLFSATLTEDVDELIKLS 323 (643)
Q Consensus 302 ----------------------------------------------------------~~q~i~~SAT~~~~~~~~~~~~ 323 (643)
-.++.+||+|...+..++...+
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 361 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY 361 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh
Confidence 0245667777765555555444
Q ss_pred cCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHh--hccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEcc
Q 006500 324 LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC--SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401 (643)
Q Consensus 324 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh 401 (643)
-...+.+... .|......-..+-. ....+...+...+ ....+.++||||+|+..++.++..|...|+++..||
T Consensus 362 ~l~vv~IPtn----kp~~R~d~~d~i~~-t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Ln 436 (745)
T TIGR00963 362 NLEVVVVPTN----RPVIRKDLSDLVYK-TEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLN 436 (745)
T ss_pred CCCEEEeCCC----CCeeeeeCCCeEEc-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEee
Confidence 3332222211 11111111111111 1222333333322 233577999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCC-------ccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEe
Q 006500 402 GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG-------VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474 (643)
Q Consensus 402 ~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~-------v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~ 474 (643)
+. +.+|...+..|..+...|+|||++|+||+||+. .-+||+|++|.|...|.|+.|||||.|.+|.+..|+
T Consensus 437 a~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~l 514 (745)
T TIGR00963 437 AK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFL 514 (745)
T ss_pred CC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEE
Confidence 98 889999999999999999999999999999998 559999999999999999999999999999999999
Q ss_pred ccCcHHH
Q 006500 475 TDNDRSL 481 (643)
Q Consensus 475 ~~~d~~~ 481 (643)
+..|.-+
T Consensus 515 s~eD~l~ 521 (745)
T TIGR00963 515 SLEDNLM 521 (745)
T ss_pred eccHHHH
Confidence 9987544
No 69
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1e-36 Score=343.11 Aligned_cols=334 Identities=23% Similarity=0.277 Sum_probs=262.7
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHH
Q 006500 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (643)
Q Consensus 135 ~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~ 214 (643)
.+......+|+..+++-|.++|..++.|+|+++.+|||.||+++|+||++- .++.+|||.|..+|+..+..
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---------~~gitvVISPL~SLm~DQv~ 322 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL---------LGGVTVVISPLISLMQDQVT 322 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc---------cCCceEEeccHHHHHHHHHH
Confidence 344445678999999999999999999999999999999999999999972 23368999999999775444
Q ss_pred HHHHHhhcCCceEEEEecCCChHHHHH---Hh-cC--CCcEEEECchhHHHHHhcc-CccCCCC---eeEEEEeCCchhc
Q 006500 215 MIEKIAQFTDIRCCLVVGGLSTKMQET---AL-RS--MPDIVVATPGRMIDHLRNS-MSVDLDD---LAVLILDEADRLL 284 (643)
Q Consensus 215 ~~~~l~~~~~~~v~~~~g~~~~~~~~~---~l-~~--~~~Ivv~Tp~~L~~~l~~~-~~~~l~~---i~~lVvDEah~l~ 284 (643)
.+.. .++....+.++.....+.. .+ .+ ..+|++.||+.+...-.-. ....+.. +.++||||||+++
T Consensus 323 ~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 323 HLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred hhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh
Confidence 4422 5889999999887753322 22 23 4789999999875422111 0123334 8999999999999
Q ss_pred cCC--hHHHHHHHH---HHCCCCceeEEEeeccchhHHHHHHHhc--CCCeEEecCCCCCCCCCceEEEEEEechh-hhh
Q 006500 285 ELG--FSAEIHELV---RLCPKRRQTMLFSATLTEDVDELIKLSL--TKPLRLSADPSAKRPSTLTEEVVRIRRMR-EVN 356 (643)
Q Consensus 285 ~~g--~~~~~~~i~---~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 356 (643)
.|| |++.+..+. ...+ ...+|.+|||.+..+...+-..+ .+|..+. ....+ +++...+. ... ...
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~sfnR-~NL~yeV~---~k~~~~~ 471 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK--SSFNR-PNLKYEVS---PKTDKDA 471 (941)
T ss_pred hhcccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec--ccCCC-CCceEEEE---eccCccc
Confidence 998 777666553 3333 37899999999998887665444 4444332 23323 34443332 222 233
Q ss_pred HHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCC
Q 006500 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (643)
Q Consensus 357 ~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi 436 (643)
....+.......+...+||||.++.+++.++..|...|+++..+|++|+..+|..+...|..++++|++||=++++|||.
T Consensus 472 ~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK 551 (941)
T KOG0351|consen 472 LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK 551 (941)
T ss_pred hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC
Confidence 34444445556677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHH
Q 006500 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (643)
Q Consensus 437 ~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~ 488 (643)
|+|+.||||.+|++.+.|+|-+|||||.|....|++|++..|...++.+...
T Consensus 552 ~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 552 PDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred CceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998888777654
No 70
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.8e-36 Score=318.21 Aligned_cols=301 Identities=22% Similarity=0.199 Sum_probs=206.7
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChH------
Q 006500 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK------ 237 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~------ 237 (643)
++++.+|||||||++|++|++..+... .+.+++|++|+++|+.|+++.+..++. ..+..++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~----~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ----KADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC----CCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhccC
Confidence 589999999999999999999886432 245799999999999999999998753 2344444432211
Q ss_pred ------HHHHHh------cCCCcEEEECchhHHHHHhccCc---cCC--CCeeEEEEeCCchhccCChHHHHHHHHHHCC
Q 006500 238 ------MQETAL------RSMPDIVVATPGRMIDHLRNSMS---VDL--DDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (643)
Q Consensus 238 ------~~~~~l------~~~~~Ivv~Tp~~L~~~l~~~~~---~~l--~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~ 300 (643)
...... ...++|+|+||+.++..+..... ..+ -..++||+||||.+..+++.. +..++..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 000001 12367999999999887765211 111 123789999999999765443 444444443
Q ss_pred -CCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhc-cCCceEEEEeC
Q 006500 301 -KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK-TFTSKVIIFSG 378 (643)
Q Consensus 301 -~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~LIF~~ 378 (643)
...|+++||||++..+..+.......+.......... .....+.+..... ....+...+..++.. ..++++||||+
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIES-DKVGEISSLERLLEFIKKGGKIAIIVN 230 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeecc-ccccCHHHHHHHHHHhhCCCeEEEEEC
Confidence 4689999999999777666654433221111110000 0011122211111 111222333333322 24679999999
Q ss_pred CHHHHHHHHHHHhhcCC--ceEEccCCCCHHHHHH----HHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChh
Q 006500 379 TKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLE----ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLT 452 (643)
Q Consensus 379 s~~~~~~l~~~L~~~~~--~~~~lh~~~~~~~R~~----~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~ 452 (643)
++..++.+...|...+. .+..+||++++.+|.+ +++.|++|...|||||+++++|+|++ +++||++..| +.
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999988765 5999999999999976 48999999999999999999999995 8999999876 78
Q ss_pred HHHHHHhhcccCCCc----cEEEEEeccC
Q 006500 453 SYVHRVGRTARAGRE----GYAVTFVTDN 477 (643)
Q Consensus 453 ~y~Qr~GRagR~g~~----g~~~~l~~~~ 477 (643)
+|+||+||+||.|+. |.+++|....
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 999999999998754 3677776544
No 71
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=8.2e-35 Score=337.32 Aligned_cols=325 Identities=25% Similarity=0.309 Sum_probs=238.6
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCc
Q 006500 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225 (643)
Q Consensus 146 ~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~ 225 (643)
..+++||..++..++.+ |+|+++|||+|||+++++++...+.. ++.++|||+||++|+.|+.+.++.+....+.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-----~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-----KGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-----CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 46899999999988887 99999999999999988888877631 2457999999999999999999988765556
Q ss_pred eEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCcee
Q 006500 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305 (643)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~ 305 (643)
.+..++|+.+... ...+...++|+|+||+.+...+... .+.+.++++|||||||++.+......+........+.+++
T Consensus 88 ~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~i 165 (773)
T PRK13766 88 KIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAG-RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLV 165 (773)
T ss_pred eEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcC-CCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEE
Confidence 7888888877654 3344556899999999998877553 4678899999999999988544344444444444566789
Q ss_pred EEEeeccchhHHHH---HHHhcCCCeEEecCCCCC-----CCCCceE---------------------------------
Q 006500 306 MLFSATLTEDVDEL---IKLSLTKPLRLSADPSAK-----RPSTLTE--------------------------------- 344 (643)
Q Consensus 306 i~~SAT~~~~~~~~---~~~~~~~p~~~~~~~~~~-----~~~~~~~--------------------------------- 344 (643)
++||||+......+ ........+.+....... .+..+..
T Consensus 166 l~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~ 245 (773)
T PRK13766 166 LGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVI 245 (773)
T ss_pred EEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 99999986443322 221111111110000000 0000000
Q ss_pred ---------------------EEEEEec----------------------------------------------------
Q 006500 345 ---------------------EVVRIRR---------------------------------------------------- 351 (643)
Q Consensus 345 ---------------------~~~~~~~---------------------------------------------------- 351 (643)
.+.....
T Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~ 325 (773)
T PRK13766 246 VSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKR 325 (773)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHH
Confidence 0000000
Q ss_pred -----------------hhhhhHHHHHHHHhh----ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCC-------
Q 006500 352 -----------------MREVNQEAVLLSLCS----KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN------- 403 (643)
Q Consensus 352 -----------------~~~~~~~~~l~~~~~----~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~------- 403 (643)
.....+...+..++. ...+.++||||+++.++..|..+|...++.+..+||.
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~ 405 (773)
T PRK13766 326 LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDK 405 (773)
T ss_pred HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccC
Confidence 000001111222221 1456799999999999999999999999999999886
Q ss_pred -CCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcH
Q 006500 404 -LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (643)
Q Consensus 404 -~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~ 479 (643)
|++.+|.+++..|++|+.+|||||+++++|+|+|.+++||+||+|+|+..|+||+||+||.| +|.+++|+...+.
T Consensus 406 ~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 406 GMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999976 6999999987653
No 72
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=319.47 Aligned_cols=331 Identities=24% Similarity=0.309 Sum_probs=236.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 006500 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (643)
Q Consensus 145 ~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~ 224 (643)
.-.++.||.+.+..+| |+|+|+++|||+|||+++...+++++-+.+. .++|+++||+.|+.|....+..++. +
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~----~KiVF~aP~~pLv~QQ~a~~~~~~~--~ 132 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK----GKVVFLAPTRPLVNQQIACFSIYLI--P 132 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc----ceEEEeeCCchHHHHHHHHHhhccC--c
Confidence 3479999999999999 9999999999999999999999999877654 5899999999999998866666543 2
Q ss_pred ceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc-cCChHHHHHHHHHHCCCCc
Q 006500 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRR 303 (643)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~-~~g~~~~~~~i~~~~~~~~ 303 (643)
..+....||.........+....+|+|+||..|.+.|.+.....|+.+.++||||||+-. +..+...+..++..-....
T Consensus 133 ~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccc
Confidence 555556666544444456677789999999999999887654557999999999999977 5556666667776666666
Q ss_pred eeEEEeeccchhHHHHHHHhcC---C----------------------CeEE-------------------------ecC
Q 006500 304 QTMLFSATLTEDVDELIKLSLT---K----------------------PLRL-------------------------SAD 333 (643)
Q Consensus 304 q~i~~SAT~~~~~~~~~~~~~~---~----------------------p~~~-------------------------~~~ 333 (643)
|+|++|||+..+.........+ . |+.+ ...
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 9999999998554333111000 0 0000 000
Q ss_pred C---------------CCCCCCCceE---------------------EEEEEec--------------h-----------
Q 006500 334 P---------------SAKRPSTLTE---------------------EVVRIRR--------------M----------- 352 (643)
Q Consensus 334 ~---------------~~~~~~~~~~---------------------~~~~~~~--------------~----------- 352 (643)
. ......+..+ ..+++-. .
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 0 0000000000 0000000 0
Q ss_pred -------------------hhhhHHH----HHHHHhhccCCceEEEEeCCHHHHHHHHHHHhh---cCCceEEccC----
Q 006500 353 -------------------REVNQEA----VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL---AALKAAELHG---- 402 (643)
Q Consensus 353 -------------------~~~~~~~----~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~---~~~~~~~lh~---- 402 (643)
....+.. ++..........++||||.++..|..|..+|.. .+++...+-|
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKS 452 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccc
Confidence 0000000 011111233456899999999999999999983 2444444433
Q ss_pred ----CCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCc
Q 006500 403 ----NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (643)
Q Consensus 403 ----~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d 478 (643)
+|++.++.++++.|++|.++|||||+++++||||+.|+.||.||.-.|+...+||.|| ||+ +.|.++++++..+
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchh
Confidence 7999999999999999999999999999999999999999999999999999999999 996 5899999998554
Q ss_pred HHHHHH
Q 006500 479 RSLLKA 484 (643)
Q Consensus 479 ~~~l~~ 484 (643)
...++.
T Consensus 531 ~~~~E~ 536 (746)
T KOG0354|consen 531 VIEFER 536 (746)
T ss_pred HHHHHH
Confidence 444433
No 73
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.6e-36 Score=330.11 Aligned_cols=316 Identities=16% Similarity=0.204 Sum_probs=217.6
Q ss_pred CCCHHHHHHHHHHhc-C--CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 006500 147 KPTPIQAACIPLALT-G--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~-g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~ 223 (643)
.|+|||.+++..++. | +..++++|||+|||++ .+.++..+. .++|||||+..|+.||.+.|.+|+...
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlv-ai~aa~~l~--------k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV-GVTAACTVK--------KSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHH-HHHHHHHhC--------CCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 689999999999885 3 4789999999999998 455555542 248999999999999999999987666
Q ss_pred CceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhcc-------CccCCCCeeEEEEeCCchhccCChHHHHHHHH
Q 006500 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-------MSVDLDDLAVLILDEADRLLELGFSAEIHELV 296 (643)
Q Consensus 224 ~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~-------~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~ 296 (643)
...+..++|+.... ......|+|+|+..+....... ..+.-..|++||+||||++....|. .++
T Consensus 326 ~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr----~il 396 (732)
T TIGR00603 326 DSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFR----RVL 396 (732)
T ss_pred CceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHH----HHH
Confidence 66777777763321 2234689999998775322111 0122357899999999998654333 344
Q ss_pred HHCCCCceeEEEeeccchhHHHH--HHHhcCCCeEEecCCCCC----CCCCceEEEEEEechh-----------------
Q 006500 297 RLCPKRRQTMLFSATLTEDVDEL--IKLSLTKPLRLSADPSAK----RPSTLTEEVVRIRRMR----------------- 353 (643)
Q Consensus 297 ~~~~~~~q~i~~SAT~~~~~~~~--~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~----------------- 353 (643)
..+. ....++||||+..+-... +... -.|..+....... ......-.-+++.-..
T Consensus 397 ~~l~-a~~RLGLTATP~ReD~~~~~L~~L-iGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l 474 (732)
T TIGR00603 397 TIVQ-AHCKLGLTATLVREDDKITDLNFL-IGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLL 474 (732)
T ss_pred HhcC-cCcEEEEeecCcccCCchhhhhhh-cCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHH
Confidence 4443 234699999996432211 1111 2233322211000 0000000011111100
Q ss_pred ---hhhHHHHHHHHhhc--cCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcC-CceEEEec
Q 006500 354 ---EVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIAT 427 (643)
Q Consensus 354 ---~~~~~~~l~~~~~~--~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g-~~~vLvaT 427 (643)
...+...+..++.. ..+.++||||.+...+..++..|. +..|||.+++.+|.++++.|+.| .+++||+|
T Consensus 475 ~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S 549 (732)
T TIGR00603 475 YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLS 549 (732)
T ss_pred hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEe
Confidence 01122222223332 357899999999999998888773 45699999999999999999875 78999999
Q ss_pred ccccccCCCCCccEEEecCCCC-ChhHHHHHHhhcccCCCccEE-------EEEeccCcHHHHHHHHH
Q 006500 428 DVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYA-------VTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 428 ~~~~~GlDi~~v~~VI~~d~p~-s~~~y~Qr~GRagR~g~~g~~-------~~l~~~~d~~~l~~i~~ 487 (643)
+++.+|||+|++++||+++.|. |...|+||+||++|.+..|.+ |.|+++++..+..+-.+
T Consensus 550 kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~R 617 (732)
T TIGR00603 550 KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKR 617 (732)
T ss_pred cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHH
Confidence 9999999999999999999985 999999999999998765544 89999998776554443
No 74
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.7e-34 Score=330.63 Aligned_cols=304 Identities=18% Similarity=0.214 Sum_probs=210.4
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcH----HHHHHHHHHHHHHhhcCCc
Q 006500 150 PIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR----ELAVQVHSMIEKIAQFTDI 225 (643)
Q Consensus 150 ~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr----~La~Q~~~~~~~l~~~~~~ 225 (643)
.+-.+++..+..++.++++|+||||||+ ++|.+..-... .....+++..|.| +||.|+.+++..- .|-
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~---g~~g~I~~TQPRRlAArsLA~RVA~El~~~---lG~ 148 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR---GVKGLIGHTQPRRLAARTVANRIAEELETE---LGG 148 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC---CCCCceeeCCCcHHHHHHHHHHHHHHHhhh---hcc
Confidence 3445566666677778899999999999 47744332211 1123577778865 6677777766641 122
Q ss_pred eEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCc-hhccCChHHH-HHHHHHHCCCCc
Q 006500 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSAE-IHELVRLCPKRR 303 (643)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah-~l~~~g~~~~-~~~i~~~~~~~~ 303 (643)
.+++-+.. ......+++|+|+|||+|++.+... ..++++++||||||| ++++.+|... +..++.. .+..
T Consensus 149 ~VGY~vrf------~~~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdl 219 (1294)
T PRK11131 149 CVGYKVRF------NDQVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDL 219 (1294)
T ss_pred eeceeecC------ccccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHHHHHHhhhc-CCCc
Confidence 23222221 1122456899999999999998763 458999999999999 5889888753 3333322 2468
Q ss_pred eeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHH------hhccCCceEEEEe
Q 006500 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL------CSKTFTSKVIIFS 377 (643)
Q Consensus 304 q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~LIF~ 377 (643)
|+|+||||++. ..+.+.+...|+ +.+... ...+...+..........+...+..+ +.....+.+|||+
T Consensus 220 KvILmSATid~--e~fs~~F~~apv-I~V~Gr---~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFL 293 (1294)
T PRK11131 220 KVIITSATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFM 293 (1294)
T ss_pred eEEEeeCCCCH--HHHHHHcCCCCE-EEEcCc---cccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 99999999974 355665555554 433221 11233333322111110011111111 1234467899999
Q ss_pred CCHHHHHHHHHHHhhcCCc---eEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecC--------
Q 006500 378 GTKQAAHRLKILFGLAALK---AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA-------- 446 (643)
Q Consensus 378 ~s~~~~~~l~~~L~~~~~~---~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d-------- 446 (643)
++...++.++..|...++. +..+||+|++.+|..+++. .|..+||||||++++|||||+|++||+++
T Consensus 294 pg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd 371 (1294)
T PRK11131 294 SGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYS 371 (1294)
T ss_pred CCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccc
Confidence 9999999999999987664 7789999999999999986 47899999999999999999999999986
Q ss_pred -------CCC---ChhHHHHHHhhcccCCCccEEEEEeccCcH
Q 006500 447 -------CPR---DLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (643)
Q Consensus 447 -------~p~---s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~ 479 (643)
+|. |..+|.||+|||||. ++|.||.|+++.+.
T Consensus 372 ~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 372 YRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred cccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 343 457899999999998 69999999998764
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=9.4e-34 Score=297.16 Aligned_cols=293 Identities=18% Similarity=0.189 Sum_probs=202.2
Q ss_pred HHHHHHHHHhcCCC--eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc----CC
Q 006500 151 IQAACIPLALTGRD--ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF----TD 224 (643)
Q Consensus 151 ~Q~~~i~~~l~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~----~~ 224 (643)
+|.++++.+..+.+ +++++|||||||.+|++|++.. ..++++++|+++|+.|+++.+..+... .+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 59999999999874 7789999999999999998842 124899999999999999999888643 25
Q ss_pred ceEEEEecCCChHH--H------------------HHHhcCCCcEEEECchhHHHHHhccCc-------cCCCCeeEEEE
Q 006500 225 IRCCLVVGGLSTKM--Q------------------ETALRSMPDIVVATPGRMIDHLRNSMS-------VDLDDLAVLIL 277 (643)
Q Consensus 225 ~~v~~~~g~~~~~~--~------------------~~~l~~~~~Ivv~Tp~~L~~~l~~~~~-------~~l~~i~~lVv 277 (643)
..+..+.|...... . .......+.|++|||+.|..++..... ..+.++++|||
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 56666666422110 0 011124688999999999766543211 12578999999
Q ss_pred eCCchhccCChH-----HHHHHHHHHCCCCceeEEEeeccchhHHHHHHHh--cCCCeEEecCCCC----------CCC-
Q 006500 278 DEADRLLELGFS-----AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSA----------KRP- 339 (643)
Q Consensus 278 DEah~l~~~g~~-----~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~----------~~~- 339 (643)
||+|.+..++.. .....++.......+++++|||+++.+...+... +..|+........ ..+
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 999998754421 2333444444445799999999999877776654 4444322211100 000
Q ss_pred -------CCceEEEEEEechhhhhHHHHHH----HHhhccCCceEEEEeCCHHHHHHHHHHHhhcC--CceEEccCCCCH
Q 006500 340 -------STLTEEVVRIRRMREVNQEAVLL----SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA--LKAAELHGNLTQ 406 (643)
Q Consensus 340 -------~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~--~~~~~lh~~~~~ 406 (643)
+.+.+.+.. ...........+. ..+....++++||||+|+..++.++..|...+ +.+..+||.+++
T Consensus 232 ~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~ 310 (357)
T TIGR03158 232 QSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPK 310 (357)
T ss_pred cccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCH
Confidence 123332222 1111111111111 12222356799999999999999999999764 578899999999
Q ss_pred HHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcc
Q 006500 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462 (643)
Q Consensus 407 ~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRag 462 (643)
.+|.++ ++..|||||++++||||++.+ +|| ++ |.++..|+||+||+|
T Consensus 311 ~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 311 KDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 998765 378899999999999999987 666 55 889999999999987
No 76
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-34 Score=293.86 Aligned_cols=208 Identities=20% Similarity=0.219 Sum_probs=173.0
Q ss_pred CCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhccCCceEEEEeCCH
Q 006500 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTK 380 (643)
Q Consensus 301 ~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~ 380 (643)
...|+|++|||+.+...+.... ..+... -+|+++....+.+++........+-........+.++||.+-|+
T Consensus 385 ~~~q~i~VSATPg~~E~e~s~~---~vveQi-----IRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTK 456 (663)
T COG0556 385 KIPQTIYVSATPGDYELEQSGG---NVVEQI-----IRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTK 456 (663)
T ss_pred hcCCEEEEECCCChHHHHhccC---ceeEEe-----ecCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehH
Confidence 3479999999998766544331 222222 27888888888888765544333322222345578999999999
Q ss_pred HHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCC-----ChhHHH
Q 006500 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR-----DLTSYV 455 (643)
Q Consensus 381 ~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~-----s~~~y~ 455 (643)
++++.|..||...|+++.++|+++..-+|.+++..++.|.++|||+.+++.+|||+|.|..|.++|..+ |..+.+
T Consensus 457 kmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 457 KMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 899999
Q ss_pred HHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccccchhhhhHHHHHHHHHHHHHHH
Q 006500 456 HRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQV 517 (643)
Q Consensus 456 Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (643)
|.+|||+| +-.|.+++|.+.-+.+|-++|.+..+.+-.+..++..+...+.++.+.+.+.+
T Consensus 537 QtIGRAAR-N~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l 597 (663)
T COG0556 537 QTIGRAAR-NVNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDIL 597 (663)
T ss_pred HHHHHHhh-ccCCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhh
Confidence 99999999 67999999999999999999999988888888888888877777777665544
No 77
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=317.51 Aligned_cols=339 Identities=23% Similarity=0.299 Sum_probs=262.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 006500 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (643)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q 211 (643)
....+..++...|+..|+.+|.+|+..+.+|+|+||+.+||||||.+|++|++++++..+.. ++|+|.||++||..
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a----~AL~lYPtnALa~D 130 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA----RALLLYPTNALAND 130 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc----cEEEEechhhhHhh
Confidence 34456888889999999999999999999999999999999999999999999999987654 69999999999999
Q ss_pred HHHHHHHHhhcCC--ceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhcc-C--ccCCCCeeEEEEeCCchhcc-
Q 006500 212 VHSMIEKIAQFTD--IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-M--SVDLDDLAVLILDEADRLLE- 285 (643)
Q Consensus 212 ~~~~~~~l~~~~~--~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~-~--~~~l~~i~~lVvDEah~l~~- 285 (643)
+.+.+.++....+ +.+..+.|..........+.+.++|++|||.+|..++... . .+.+.++++|||||+|..-.
T Consensus 131 Q~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv 210 (851)
T COG1205 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV 210 (851)
T ss_pred HHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc
Confidence 9999999987766 8888889988888877888999999999999997744432 2 22577899999999997532
Q ss_pred CC-----hHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhh-----
Q 006500 286 LG-----FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV----- 355 (643)
Q Consensus 286 ~g-----~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 355 (643)
.| ....+..+++..+..+|+|+.|||+.+. .++...++.......+. ....+..........+.....
T Consensus 211 ~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~~~~~r 288 (851)
T COG1205 211 QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIRELAESIR 288 (851)
T ss_pred chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhhhhhcc
Confidence 11 2234444555566789999999999754 44444455444444322 233444444444443311000
Q ss_pred -hHHHHHHHHhh--ccCCceEEEEeCCHHHHHHHH----HHHhhcC----CceEEccCCCCHHHHHHHHHHhhcCCceEE
Q 006500 356 -NQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLK----ILFGLAA----LKAAELHGNLTQAQRLEALELFRKQHVDFL 424 (643)
Q Consensus 356 -~~~~~l~~~~~--~~~~~~~LIF~~s~~~~~~l~----~~L~~~~----~~~~~lh~~~~~~~R~~~l~~F~~g~~~vL 424 (643)
.....+..+.. -..+-++|+|+.++..++.+. ..+...+ ..+..+++++...+|.++...|++|+..++
T Consensus 289 ~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~ 368 (851)
T COG1205 289 RSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGV 368 (851)
T ss_pred cchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEE
Confidence 11111111211 123568999999999999996 3333344 568899999999999999999999999999
Q ss_pred EecccccccCCCCCccEEEecCCCC-ChhHHHHHHhhcccCCCccEEEEEecc
Q 006500 425 IATDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTD 476 (643)
Q Consensus 425 vaT~~~~~GlDi~~v~~VI~~d~p~-s~~~y~Qr~GRagR~g~~g~~~~l~~~ 476 (643)
++|+++.-|+||.+++.||+++.|. +..++.||.||+||.++.+..+++...
T Consensus 369 ~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 369 IATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred ecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 9999999999999999999999999 899999999999999977777777763
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3.2e-33 Score=272.84 Aligned_cols=341 Identities=18% Similarity=0.229 Sum_probs=260.9
Q ss_pred cCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHH
Q 006500 129 ELNLSRPLLRACE-ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (643)
Q Consensus 129 ~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~ 207 (643)
+++.+......|+ .+...+++|.|..+|+..+.|.++++..|||.||+++|++|+|.. .+-+||+||...
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---------dg~alvi~plis 145 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---------DGFALVICPLIS 145 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---------CCceEeechhHH
Confidence 3567777666664 467789999999999999999999999999999999999999855 234899999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEecCCChHHHH---HHh---cCCCcEEEECchhHHH------HHhccCccCCCCeeEE
Q 006500 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE---TAL---RSMPDIVVATPGRMID------HLRNSMSVDLDDLAVL 275 (643)
Q Consensus 208 La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~---~~l---~~~~~Ivv~Tp~~L~~------~l~~~~~~~l~~i~~l 275 (643)
|+....-.+++ .|+....+....+..... ..+ .....+++.||+.+.. -|.. .+....+.++
T Consensus 146 lmedqil~lkq----lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek--a~~~~~~~~i 219 (695)
T KOG0353|consen 146 LMEDQILQLKQ----LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK--ALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHH----hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH--HhhcceeEEE
Confidence 98866566666 467777666655433221 112 2236789999998743 2332 3456678999
Q ss_pred EEeCCchhccCC--hHHHHH--HHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEec
Q 006500 276 ILDEADRLLELG--FSAEIH--ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 351 (643)
Q Consensus 276 VvDEah~l~~~g--~~~~~~--~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 351 (643)
.|||+|+-..|| |+..+. .++...-+...+|+++||.++.+....+..+.....+.+.....+| ++...+..-+.
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~-nl~yev~qkp~ 298 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRP-NLKYEVRQKPG 298 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCC-CceeEeeeCCC
Confidence 999999999998 555544 3455555678899999999988877766555433333333344344 44444333322
Q ss_pred hhhhhHHHHHHHHhh-ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccc
Q 006500 352 MREVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (643)
Q Consensus 352 ~~~~~~~~~l~~~~~-~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~ 430 (643)
. ...-..-+..+++ ...+...||||-++..++.++..|+..|+.+..+|.+|.+.++.-+-+.|..|++.|+|+|-++
T Consensus 299 n-~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 299 N-EDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred C-hHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeee
Confidence 2 2222222333333 3445678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEecCCCCChhHHHH-------------------------------------------HHhhcccCCCc
Q 006500 431 ARGLDIIGVQTVINYACPRDLTSYVH-------------------------------------------RVGRTARAGRE 467 (643)
Q Consensus 431 ~~GlDi~~v~~VI~~d~p~s~~~y~Q-------------------------------------------r~GRagR~g~~ 467 (643)
++|||-|+|++|||..+|.|...|.| ..||+||.|.+
T Consensus 378 gmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~ 457 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMK 457 (695)
T ss_pred cccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCc
Confidence 99999999999999999999999999 78999999999
Q ss_pred cEEEEEeccCcHHHHHHHH
Q 006500 468 GYAVTFVTDNDRSLLKAIA 486 (643)
Q Consensus 468 g~~~~l~~~~d~~~l~~i~ 486 (643)
..|++|+.-.|.-.+..+.
T Consensus 458 a~cilyy~~~difk~ssmv 476 (695)
T KOG0353|consen 458 ADCILYYGFADIFKISSMV 476 (695)
T ss_pred ccEEEEechHHHHhHHHHH
Confidence 9999999888765555443
No 79
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=314.32 Aligned_cols=334 Identities=20% Similarity=0.246 Sum_probs=245.8
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 130 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
+.+...+.+-+...|+..+.+.|+.++...+. ++|+|+|+|||||||+++.+.+++.+... +.++|+|||+++|
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----~~k~vYivPlkAL 88 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----GGKVVYIVPLKAL 88 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----CCcEEEEeChHHH
Confidence 34778888888889998888888888876555 59999999999999999999999999765 3469999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCCh
Q 006500 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 288 (643)
Q Consensus 209 a~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~ 288 (643)
|.+.++.+..| ...|++|...+|+...... ....++|+|+||+++-..+++... .+..+++|||||+|.+.+...
T Consensus 89 a~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 89 AEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCccc
Confidence 99999999955 4469999999999775542 234689999999999888887644 578899999999998886544
Q ss_pred HHHHHHHHH---HCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCC-CCCCCCCceEEEEEEechhh---hhHHH-H
Q 006500 289 SAEIHELVR---LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP-SAKRPSTLTEEVVRIRRMRE---VNQEA-V 360 (643)
Q Consensus 289 ~~~~~~i~~---~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~-~ 360 (643)
...+..++. ......|++++|||+++ ..++....-.+++.....+ ...++....+.+........ ..... .
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~ 242 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLA 242 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHH
Confidence 444444433 33334899999999985 4444444333333111111 11222333333333321111 11111 1
Q ss_pred HHH-HhhccCCceEEEEeCCHHHHHHHHHHHhhc-------------------------------------CCceEEccC
Q 006500 361 LLS-LCSKTFTSKVIIFSGTKQAAHRLKILFGLA-------------------------------------ALKAAELHG 402 (643)
Q Consensus 361 l~~-~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~lh~ 402 (643)
+.. +.....++.+||||+|+..+...+..+... -..++.+|+
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 111 122344679999999999998888777620 123678999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEE----ecC-----CCCChhHHHHHHhhcccCC--CccEEE
Q 006500 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----NYA-----CPRDLTSYVHRVGRTARAG--REGYAV 471 (643)
Q Consensus 403 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI----~~d-----~p~s~~~y~Qr~GRagR~g--~~g~~~ 471 (643)
+|+..+|.-+.+.|+.|.++||+||..++.|+|+|.-.+|| -|+ .+-++.+|+|+.|||||.| ..|.++
T Consensus 323 GL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~ 402 (766)
T COG1204 323 GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAI 402 (766)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEE
Confidence 99999999999999999999999999999999999877777 566 5558899999999999987 446777
Q ss_pred EEe
Q 006500 472 TFV 474 (643)
Q Consensus 472 ~l~ 474 (643)
++.
T Consensus 403 i~~ 405 (766)
T COG1204 403 ILA 405 (766)
T ss_pred EEe
Confidence 776
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.4e-32 Score=310.95 Aligned_cols=336 Identities=16% Similarity=0.153 Sum_probs=218.4
Q ss_pred CCCHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 006500 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~ 224 (643)
.|.|+|..++..++.. ..+|+++++|.|||+.+.+.+-+.+.... ..++|||||+ .|+.||..++..++ +
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~----~~rvLIVvP~-sL~~QW~~El~~kF---~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR----AERVLILVPE-TLQHQWLVEMLRRF---N 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC----CCcEEEEcCH-HHHHHHHHHHHHHh---C
Confidence 4899999998877653 47999999999999986554444333321 2359999998 89999998886643 4
Q ss_pred ceEEEEecCCChHHHHH--HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC--hHHHHHHHHHHCC
Q 006500 225 IRCCLVVGGLSTKMQET--ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHELVRLCP 300 (643)
Q Consensus 225 ~~v~~~~g~~~~~~~~~--~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g--~~~~~~~i~~~~~ 300 (643)
+.+.++.++........ ......+++|+|++.|...-.....+.-..|++|||||||++.+.. -...+..+.....
T Consensus 224 l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 224 LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 45444443321110000 1112468999999887642111011223468999999999997321 1122233333333
Q ss_pred CCceeEEEeeccch-hHHHH-------------------------------HHHhc-CCC--------------------
Q 006500 301 KRRQTMLFSATLTE-DVDEL-------------------------------IKLSL-TKP-------------------- 327 (643)
Q Consensus 301 ~~~q~i~~SAT~~~-~~~~~-------------------------------~~~~~-~~p-------------------- 327 (643)
....++++||||.. ...++ +...+ ..+
T Consensus 304 ~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 383 (956)
T PRK04914 304 VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEP 383 (956)
T ss_pred ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhH
Confidence 44578999999852 11110 00000 000
Q ss_pred -------------------------------eEEecCC--CCCCCCCceEEEEEEech----------------------
Q 006500 328 -------------------------------LRLSADP--SAKRPSTLTEEVVRIRRM---------------------- 352 (643)
Q Consensus 328 -------------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~---------------------- 352 (643)
+.+.... ....|....+. +.+...
T Consensus 384 l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~-~~l~~~~~y~~~~~~~~~~~~~~~l~pe 462 (956)
T PRK04914 384 LLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHP-IPLPLPEQYQTAIKVSLEARARDMLYPE 462 (956)
T ss_pred HHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeE-eecCCCHHHHHHHHHhHHHHHHhhcCHH
Confidence 0000000 00000000000 000000
Q ss_pred -------------hhhhHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHH-hhcCCceEEccCCCCHHHHHHHHHHhhc
Q 006500 353 -------------REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF-GLAALKAAELHGNLTQAQRLEALELFRK 418 (643)
Q Consensus 353 -------------~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L-~~~~~~~~~lh~~~~~~~R~~~l~~F~~ 418 (643)
....+...+..++....+.++||||+++..+..+...| ...|+.+..+||+|++.+|.++++.|++
T Consensus 463 ~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~ 542 (956)
T PRK04914 463 QIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFAD 542 (956)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhc
Confidence 00112334555566666789999999999999999999 4679999999999999999999999998
Q ss_pred C--CceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcC
Q 006500 419 Q--HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS 491 (643)
Q Consensus 419 g--~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~ 491 (643)
+ ...|||||+++++|+|++.+++|||||+||||..|+||+||+||+|++|.+.+++........+.|.+.+..
T Consensus 543 ~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 543 EEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred CCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 4 589999999999999999999999999999999999999999999999988777766555455555554443
No 81
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.3e-32 Score=311.85 Aligned_cols=313 Identities=19% Similarity=0.216 Sum_probs=216.1
Q ss_pred CCCCCCHHH---HHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006500 144 GYSKPTPIQ---AACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (643)
Q Consensus 144 g~~~~~~~Q---~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~ 220 (643)
.|...-|+. .+++..+..++.+|++|+||||||++ +|.+..-... ...++++++.|.|..|..++..+....
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~---~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR---GSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC---CCCceEecCCccHHHHHHHHHHHHHHh
Confidence 444434444 35566666677888999999999995 5654332211 123468889999998888776665543
Q ss_pred hcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCc-hhccCChHHH-HHHHHHH
Q 006500 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSAE-IHELVRL 298 (643)
Q Consensus 221 ~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah-~l~~~g~~~~-~~~i~~~ 298 (643)
+..++..+|..-. ........+.|+|+|+|+|+..+... ..+..+++||||||| +.++.+|... +..++..
T Consensus 136 ---g~~lG~~VGY~vR--~~~~~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~ 208 (1283)
T TIGR01967 136 ---GTPLGEKVGYKVR--FHDQVSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR 208 (1283)
T ss_pred ---CCCcceEEeeEEc--CCcccCCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHHHHHhh
Confidence 3333444442100 01113456899999999999988763 458999999999999 5888887764 5555544
Q ss_pred CCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechh---hhhHHH----HHHHHhhccCCc
Q 006500 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR---EVNQEA----VLLSLCSKTFTS 371 (643)
Q Consensus 299 ~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~ 371 (643)
. +..|+|+||||+.. ..+.+.+...|+ +.+... ..+ +...+....... ...... .+..++. ..++
T Consensus 209 r-pdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr-~~P--Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~G 280 (1283)
T TIGR01967 209 R-PDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGR-TYP--VEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPG 280 (1283)
T ss_pred C-CCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCC-ccc--ceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCC
Confidence 4 47899999999964 455565555554 333221 112 222222111100 001111 1222222 2457
Q ss_pred eEEEEeCCHHHHHHHHHHHhhcC---CceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCC
Q 006500 372 KVIIFSGTKQAAHRLKILFGLAA---LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 448 (643)
Q Consensus 372 ~~LIF~~s~~~~~~l~~~L~~~~---~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p 448 (643)
.+|||+++..+++.+...|...+ +.+..+||.|++.+|.+++..+ +..+|||||+++++|||||+|++||+++++
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~ 358 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTA 358 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCc
Confidence 89999999999999999998764 4588999999999999997654 347899999999999999999999999954
Q ss_pred C------------------ChhHHHHHHhhcccCCCccEEEEEeccCcH
Q 006500 449 R------------------DLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (643)
Q Consensus 449 ~------------------s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~ 479 (643)
. |..+|.||+|||||.| +|.||.|+++.+.
T Consensus 359 r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 359 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred cccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 3 5579999999999987 9999999998654
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.1e-29 Score=285.75 Aligned_cols=320 Identities=19% Similarity=0.223 Sum_probs=217.9
Q ss_pred CCCHHHHHHHHHHhcC---CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 006500 147 KPTPIQAACIPLALTG---RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g---~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~ 223 (643)
.|+++|+++++.+..+ +++++.|+||||||.+|+.++.+.+.. +.++|||+||++|+.|+++.+++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~------g~~vLvLvPt~~L~~Q~~~~l~~~f--- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ------GKQALVLVPEIALTPQMLARFRARF--- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc------CCeEEEEeCcHHHHHHHHHHHHHHh---
Confidence 5899999999999884 789999999999999998877666542 3469999999999999999998753
Q ss_pred CceEEEEecCCChHHHHH----HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCCh------HHHHH
Q 006500 224 DIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF------SAEIH 293 (643)
Q Consensus 224 ~~~v~~~~g~~~~~~~~~----~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~------~~~~~ 293 (643)
+..+..++|+.+...... ...+.++|+|+|++.+. ..+.++++|||||+|...-+.. ...+
T Consensus 215 g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v- 285 (679)
T PRK05580 215 GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL- 285 (679)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHH-
Confidence 678899999987654432 23456899999998763 3467889999999998663321 1122
Q ss_pred HHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEech-hh----hhHHHHHHHHhhc-
Q 006500 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM-RE----VNQEAVLLSLCSK- 367 (643)
Q Consensus 294 ~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~- 367 (643)
.+......+.|+|++|||++.+....+... ....+.............-.++..... .. ......+..+...
T Consensus 286 a~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l 363 (679)
T PRK05580 286 AVVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL 363 (679)
T ss_pred HHHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH
Confidence 233444567899999999886655443321 111111111110000001111111100 00 0001111111111
Q ss_pred cCCceEEEEeCCH------------------------------------------------------------HHHHHHH
Q 006500 368 TFTSKVIIFSGTK------------------------------------------------------------QAAHRLK 387 (643)
Q Consensus 368 ~~~~~~LIF~~s~------------------------------------------------------------~~~~~l~ 387 (643)
..+.++|||+|.+ ..++++.
T Consensus 364 ~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~ 443 (679)
T PRK05580 364 ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLE 443 (679)
T ss_pred HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHH
Confidence 1234677776642 2445667
Q ss_pred HHHhhc--CCceEEccCCCCH--HHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCC--CC----------h
Q 006500 388 ILFGLA--ALKAAELHGNLTQ--AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP--RD----------L 451 (643)
Q Consensus 388 ~~L~~~--~~~~~~lh~~~~~--~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p--~s----------~ 451 (643)
+.|... +.++..+|+++.+ .++..+++.|++|+.+|||+|+++++|+|+|+|++|+.++.+ -+ .
T Consensus 444 e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~ 523 (679)
T PRK05580 444 EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTF 523 (679)
T ss_pred HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHH
Confidence 777665 7889999999874 578999999999999999999999999999999999655544 32 2
Q ss_pred hHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHH
Q 006500 452 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486 (643)
Q Consensus 452 ~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~ 486 (643)
+.|.|++||+||.+..|.+++.....+...+..+.
T Consensus 524 ~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 524 QLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred HHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 67999999999999999999887666555555443
No 83
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-30 Score=275.56 Aligned_cols=331 Identities=18% Similarity=0.171 Sum_probs=241.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 006500 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (643)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q 211 (643)
-+.+++++-..+. ...-.++++..|..+--+||||.||||||++....++++.+.......++.+-|..|+|..|.-
T Consensus 244 R~~EIQ~sR~~LP---I~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaia 320 (1172)
T KOG0926|consen 244 RPAEIQESRLDLP---IVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIA 320 (1172)
T ss_pred CcHHHHHHHhcCc---hhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHH
Confidence 3445555433332 2233456677777777788999999999998777788887776655556789999999988887
Q ss_pred HHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc-c----C
Q 006500 212 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-E----L 286 (643)
Q Consensus 212 ~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~-~----~ 286 (643)
++.....-....+-.|++.+.- ...+...+.|.++|.|.|+..+.+ ++.|..++.|||||||.-. + .
T Consensus 321 mAkRVa~EL~~~~~eVsYqIRf------d~ti~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILi 392 (1172)
T KOG0926|consen 321 MAKRVAFELGVLGSEVSYQIRF------DGTIGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILI 392 (1172)
T ss_pred HHHHHHHHhccCccceeEEEEe------ccccCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHH
Confidence 6654443222244455544432 222445678999999999999988 7889999999999999744 2 3
Q ss_pred ChHHHHHHHHHHCCC------CceeEEEeeccchh-HHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHH
Q 006500 287 GFSAEIHELVRLCPK------RRQTMLFSATLTED-VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359 (643)
Q Consensus 287 g~~~~~~~i~~~~~~------~~q~i~~SAT~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (643)
|+...+..+.....+ +.++|+||||+.-. ..+...+|-..|..+.++. ...+...|+..+....+......
T Consensus 393 GmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdA--RQfPVsIHF~krT~~DYi~eAfr 470 (1172)
T KOG0926|consen 393 GMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDA--RQFPVSIHFNKRTPDDYIAEAFR 470 (1172)
T ss_pred HHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeec--ccCceEEEeccCCCchHHHHHHH
Confidence 455666666555444 77899999999732 3333344444444454432 22233444545555556666777
Q ss_pred HHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhc----------------------------------------------
Q 006500 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA---------------------------------------------- 393 (643)
Q Consensus 360 ~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~---------------------------------------------- 393 (643)
..+.++.+.+.+.+|||+.....+..|...|+..
T Consensus 471 Ktc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~e 550 (1172)
T KOG0926|consen 471 KTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDE 550 (1172)
T ss_pred HHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchh
Confidence 7888999999999999999999999888777321
Q ss_pred -----------------------------------------------------CCceEEccCCCCHHHHHHHHHHhhcCC
Q 006500 394 -----------------------------------------------------ALKAAELHGNLTQAQRLEALELFRKQH 420 (643)
Q Consensus 394 -----------------------------------------------------~~~~~~lh~~~~~~~R~~~l~~F~~g~ 420 (643)
.+-|+.|++-++...+++++..-..|.
T Consensus 551 d~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~ 630 (1172)
T KOG0926|consen 551 DIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGE 630 (1172)
T ss_pred hhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCc
Confidence 023788999999999999999999999
Q ss_pred ceEEEecccccccCCCCCccEEEe--------cCCCCChhHH----------HHHHhhcccCCCccEEEEEecc
Q 006500 421 VDFLIATDVAARGLDIIGVQTVIN--------YACPRDLTSY----------VHRVGRTARAGREGYAVTFVTD 476 (643)
Q Consensus 421 ~~vLvaT~~~~~GlDi~~v~~VI~--------~d~p~s~~~y----------~Qr~GRagR~g~~g~~~~l~~~ 476 (643)
.-++|||++|++.|.||+|++||. ||.-..++.| -||+|||||.| +|+||.||+.
T Consensus 631 RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 631 RLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred eEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 999999999999999999999995 5544444443 49999999988 9999999985
No 84
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.7e-30 Score=281.21 Aligned_cols=339 Identities=18% Similarity=0.235 Sum_probs=244.7
Q ss_pred HHCCCCCCCHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhHHhHHHHHhcCCC----CCCCeEEEEEcCcHHHHHHHHHH
Q 006500 141 EALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIRVLILTPTRELAVQVHSM 215 (643)
Q Consensus 141 ~~~g~~~~~~~Q~~~i~~~l~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~vLil~Ptr~La~Q~~~~ 215 (643)
..++|..+..+|..+.|.+... .|.|||||||||||-.|+|.+|+.+..... .....++++|+|+++||..+++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 4568889999999999999874 699999999999999999999998875211 23466899999999999988877
Q ss_pred HHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccC--ccCCCCeeEEEEeCCchhccCChHHHHH
Q 006500 216 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM--SVDLDDLAVLILDEADRLLELGFSAEIH 293 (643)
Q Consensus 216 ~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~--~~~l~~i~~lVvDEah~l~~~g~~~~~~ 293 (643)
+.+-....|+.|..++|+......+ ...++|+|+||+..--.-+... .-.++.+++|||||+|.|-+. ..+.++
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHH
Confidence 7665555699999999997765544 2358999999999732222211 224678999999999976542 333343
Q ss_pred HH-------HHHCCCCceeEEEeeccchhHHHHHHHhcCC-CeEEecCCCCCCCCCceEEEEEEechhhhhHHH------
Q 006500 294 EL-------VRLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA------ 359 (643)
Q Consensus 294 ~i-------~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 359 (643)
.| ........+++++|||+|+.. +++...-.+ +.-+..-....+|..+.+.++-...........
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~e-DvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNYE-DVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCHH-HHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 33 333445678999999998643 333322222 233333334557888888877665441111111
Q ss_pred --HHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcC-----------------------CceEEccCCCCHHHHHHHHH
Q 006500 360 --VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA-----------------------LKAAELHGNLTQAQRLEALE 414 (643)
Q Consensus 360 --~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~-----------------------~~~~~lh~~~~~~~R~~~l~ 414 (643)
.+..++ ..++.++|||.++....+.++.|...+ ...+..|++|...+|.-+..
T Consensus 339 ~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~ 416 (1230)
T KOG0952|consen 339 YDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEK 416 (1230)
T ss_pred HHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHH
Confidence 112222 236799999999999998888885421 23667899999999999999
Q ss_pred HhhcCCceEEEecccccccCCCCCccEEE----ecCCCC------ChhHHHHHHhhcccC--CCccEEEEEeccCcHHHH
Q 006500 415 LFRKQHVDFLIATDVAARGLDIIGVQTVI----NYACPR------DLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLL 482 (643)
Q Consensus 415 ~F~~g~~~vLvaT~~~~~GlDi~~v~~VI----~~d~p~------s~~~y~Qr~GRagR~--g~~g~~~~l~~~~d~~~l 482 (643)
.|..|.++||+||..++.|+|+|.--++| .||.-. +.-..+|..|||||. +..|.++++-+.+-...+
T Consensus 417 ~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 417 EFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 99999999999999999999998766665 344433 466788999999994 467999888777655444
Q ss_pred HHHH
Q 006500 483 KAIA 486 (643)
Q Consensus 483 ~~i~ 486 (643)
..+.
T Consensus 497 ~sLl 500 (1230)
T KOG0952|consen 497 ESLL 500 (1230)
T ss_pred HHHH
Confidence 4443
No 85
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.97 E-value=2.4e-30 Score=273.12 Aligned_cols=314 Identities=19% Similarity=0.279 Sum_probs=223.5
Q ss_pred CCCHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 147 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
.+++||.+.++|+.+ |-++|++..+|.|||++ .|.+|..+..... .++ ..||+||...| ..|.+++++|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~-~~G-PfLVi~P~StL-~NW~~Ef~rf~-- 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG-IPG-PFLVIAPKSTL-DNWMNEFKRFT-- 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC-CCC-CeEEEeeHhhH-HHHHHHHHHhC--
Confidence 699999999999875 67899999999999998 6777777665432 233 38999999988 45788888887
Q ss_pred CCceEEEEecCCChHHH--H-HHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHC
Q 006500 223 TDIRCCLVVGGLSTKMQ--E-TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~--~-~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~ 299 (643)
+++++.+++|....... . .......+|+|||++..+..- ..+.--.|+++||||||++-|. ...+..+++.+
T Consensus 241 P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f 315 (971)
T KOG0385|consen 241 PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREF 315 (971)
T ss_pred CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEEEechhhhhcch--hhHHHHHHHHh
Confidence 68899999998643321 1 122347899999999987641 1334457999999999999874 44445555555
Q ss_pred CCCceeEEEeeccc-hhHHHH-----------------------------------------------------------
Q 006500 300 PKRRQTMLFSATLT-EDVDEL----------------------------------------------------------- 319 (643)
Q Consensus 300 ~~~~q~i~~SAT~~-~~~~~~----------------------------------------------------------- 319 (643)
.... .+++|+|+- +++.++
T Consensus 316 ~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred cccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 4433 366677753 222222
Q ss_pred ----------------------------------------------HHHhcCCCeEEecCCCCCCCCCceEEEEEEechh
Q 006500 320 ----------------------------------------------IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353 (643)
Q Consensus 320 ----------------------------------------------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (643)
++..|+.|..+...... .|....+.+ ..
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg-~pyttdehL-----v~ 468 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG-PPYTTDEHL-----VT 468 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC-CCCCcchHH-----Hh
Confidence 11112222211110000 000000000 01
Q ss_pred hhhHHHHHHHHhh--ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCC---ceEEEecc
Q 006500 354 EVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH---VDFLIATD 428 (643)
Q Consensus 354 ~~~~~~~l~~~~~--~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~---~~vLvaT~ 428 (643)
...+..+|..++. ...+++||||.+...+.+.|..|+...++.++.|+|.++..+|..+++.|+... +-+|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 1222233333332 234789999999999999999999999999999999999999999999999753 55899999
Q ss_pred cccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCcc--EEEEEeccCc
Q 006500 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG--YAVTFVTDND 478 (643)
Q Consensus 429 ~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g--~~~~l~~~~d 478 (643)
+++.|||+..+++||.||..|||+..+|.+.||+|+|+.. .||.|++.+.
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 9999999999999999999999999999999999999765 4556677664
No 86
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.1e-28 Score=273.42 Aligned_cols=321 Identities=21% Similarity=0.243 Sum_probs=229.9
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
+|. .|+++|.-+--.+..| -|+.++||+|||++|.+|++..++.. ..++|++||+.||.|.++++..+..+
T Consensus 79 lg~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G------~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAISG------RGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred cCC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhcC------CCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 454 4777787666555554 58999999999999999999877543 24899999999999999999999999
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhH-HHHHhccCccCC-----CCeeEEEEeCCchhcc---------CC
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDL-----DDLAVLILDEADRLLE---------LG 287 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~~~~~l-----~~i~~lVvDEah~l~~---------~g 287 (643)
.|+++++++|+.+...+...+ .+||+|+||++| .++|.+...+.+ ..+.++||||||.|+- .|
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg 227 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISG 227 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeC
Confidence 999999999998877654443 689999999999 999988644444 5899999999999541 00
Q ss_pred -------hHHHHHHHHHHCCC--------------C--------------------------------------------
Q 006500 288 -------FSAEIHELVRLCPK--------------R-------------------------------------------- 302 (643)
Q Consensus 288 -------~~~~~~~i~~~~~~--------------~-------------------------------------------- 302 (643)
+...+..+...+.. .
T Consensus 228 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~ 307 (896)
T PRK13104 228 AAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNA 307 (896)
T ss_pred CCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHH
Confidence 11111111111100 0
Q ss_pred ------------------------------------------------------------------------ceeEEEee
Q 006500 303 ------------------------------------------------------------------------RQTMLFSA 310 (643)
Q Consensus 303 ------------------------------------------------------------------------~q~i~~SA 310 (643)
.++-+||+
T Consensus 308 aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTG 387 (896)
T PRK13104 308 ALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTG 387 (896)
T ss_pred HHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCC
Confidence 12334444
Q ss_pred ccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHh--hccCCceEEEEeCCHHHHHHHHH
Q 006500 311 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC--SKTFTSKVIIFSGTKQAAHRLKI 388 (643)
Q Consensus 311 T~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~LIF~~s~~~~~~l~~ 388 (643)
|...+..++...+-...+.+... +|......-..+-. ....+...+...+ ....+.++||||+|+..++.++.
T Consensus 388 Ta~te~~Ef~~iY~l~Vv~IPtn----kp~~R~d~~d~v~~-t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~ 462 (896)
T PRK13104 388 TADTEAYEFQQIYNLEVVVIPTN----RSMIRKDEADLVYL-TQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQ 462 (896)
T ss_pred CChhHHHHHHHHhCCCEEECCCC----CCcceecCCCeEEc-CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHH
Confidence 44444444333332222221111 11111111001111 1223333333322 23457799999999999999999
Q ss_pred HHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCC-------------------------------
Q 006500 389 LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII------------------------------- 437 (643)
Q Consensus 389 ~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~------------------------------- 437 (643)
+|...|+++..||+.+.+.++..+.+.|+.|. |+|||++|+||+||.
T Consensus 463 ~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (896)
T PRK13104 463 LLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKR 540 (896)
T ss_pred HHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhh
Confidence 99999999999999999999999999999995 999999999999995
Q ss_pred -------CccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHH
Q 006500 438 -------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (643)
Q Consensus 438 -------~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~ 481 (643)
|==+||-...+.|..---|-.||+||-|.+|.+..|+|-.|.-+
T Consensus 541 ~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 541 HDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred hhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 12379999999999999999999999999999999999887543
No 87
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=3.5e-29 Score=285.87 Aligned_cols=328 Identities=18% Similarity=0.223 Sum_probs=221.5
Q ss_pred CCCHHHHHHHHHHh----cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
.+++||..++.|++ +|.++|++..+|.|||++ .+.++..+..... ....+|||||. .+..||.+++.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQ-aIalL~~L~~~~~--~~gp~LIVvP~-SlL~nW~~Ei~kw~-- 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQ-TISLLGYLHEYRG--ITGPHMVVAPK-STLGNWMNEIRRFC-- 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHH-HHHHHHHHHHhcC--CCCCEEEEeCh-HHHHHHHHHHHHHC--
Confidence 68999999999986 478899999999999998 4556655543221 12348999997 55688999999987
Q ss_pred CCceEEEEecCCChHHHHH---HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHC
Q 006500 223 TDIRCCLVVGGLSTKMQET---ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~---~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~ 299 (643)
+.+++..++|......... ......+|+|+|++.+...... +.-..|.+|||||||++-+. .......+..+
T Consensus 243 p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 243 PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 4567777777643322211 1234689999999998765432 23346889999999999873 33344555555
Q ss_pred CCCceeEEEeeccch-hHHHHHHHh-cCCCeEE----------------------------------ec---CCCCCCCC
Q 006500 300 PKRRQTMLFSATLTE-DVDELIKLS-LTKPLRL----------------------------------SA---DPSAKRPS 340 (643)
Q Consensus 300 ~~~~q~i~~SAT~~~-~~~~~~~~~-~~~p~~~----------------------------------~~---~~~~~~~~ 340 (643)
.. ...+++|+||-. .+.++..+. +-.|-.+ .. +.....|+
T Consensus 318 ~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp 396 (1033)
T PLN03142 318 ST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 396 (1033)
T ss_pred hc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC
Confidence 43 345889999852 222221110 0000000 00 00000111
Q ss_pred CceEEEEEEech------------------------------------------------------------hhhhHHHH
Q 006500 341 TLTEEVVRIRRM------------------------------------------------------------REVNQEAV 360 (643)
Q Consensus 341 ~~~~~~~~~~~~------------------------------------------------------------~~~~~~~~ 360 (643)
.....+.+.-. ....+...
T Consensus 397 -K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 397 -KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred -ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 11111111100 00112222
Q ss_pred HHHHhh--ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcC---CceEEEecccccccCC
Q 006500 361 LLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ---HVDFLIATDVAARGLD 435 (643)
Q Consensus 361 l~~~~~--~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g---~~~vLvaT~~~~~GlD 435 (643)
+..++. ...++++|||+....++..|..+|...++.+..|||+++..+|..+++.|+.. .+-+|++|.+++.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 222222 23467999999999999999999999999999999999999999999999863 3467999999999999
Q ss_pred CCCccEEEecCCCCChhHHHHHHhhcccCCCccE--EEEEeccCc--HHHHHHHHH
Q 006500 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGY--AVTFVTDND--RSLLKAIAK 487 (643)
Q Consensus 436 i~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~--~~~l~~~~d--~~~l~~i~~ 487 (643)
+..+++||+||+||||..+.|++||++|.|+... ++.|++.++ ..++....+
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~ 611 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYK 611 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999998754 555666654 344544433
No 88
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=2e-29 Score=245.05 Aligned_cols=202 Identities=49% Similarity=0.786 Sum_probs=183.0
Q ss_pred cccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcH
Q 006500 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (643)
Q Consensus 127 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr 206 (643)
|+++++++.+.+.+..+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+..... ..++++||++||+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~-~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK-KDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc-cCCceEEEEcCCH
Confidence 677899999999999999999999999999999999999999999999999999999999877531 2457899999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccC
Q 006500 207 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (643)
Q Consensus 207 ~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~ 286 (643)
+|+.|+...+..+....++.+..++|+.........+..+++|+|+||+.|...+.+. ...+.+++++|+||||.+.+.
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChHHhhcc
Confidence 9999999999999887889999999998877666666678999999999999988875 467889999999999999999
Q ss_pred ChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEE
Q 006500 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 330 (643)
Q Consensus 287 g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~ 330 (643)
++...+..++..++..+|++++|||+++.+..+...++.+|+.+
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 99999999999999999999999999999999999999888765
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.9e-29 Score=271.03 Aligned_cols=299 Identities=21% Similarity=0.251 Sum_probs=206.3
Q ss_pred CCCCHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 146 SKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 146 ~~~~~~Q~~~i~~~l~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
..|++||++++..+.. ++.+++++|||+|||.++ +.++..+.. .+||||||++|+.||.+.+..+..
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va-~~~~~~~~~--------~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVA-AEAIAELKR--------STLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHH-HHHHHHhcC--------CEEEEECcHHHHHHHHHHHHHhcC
Confidence 3699999999999999 899999999999999874 555555422 299999999999999877776543
Q ss_pred cCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCC
Q 006500 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301 (643)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~ 301 (643)
.. ..++.+.|+... ... ..|+|+|...+.... ....+....+.+||+||||++....+......+....+
T Consensus 106 ~~-~~~g~~~~~~~~------~~~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~- 175 (442)
T COG1061 106 LN-DEIGIYGGGEKE------LEP-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP- 175 (442)
T ss_pred Cc-cccceecCceec------cCC-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccc-
Confidence 22 123444443211 111 469999999987742 00123344799999999999987666655554443333
Q ss_pred CceeEEEeeccchhH-HHHHHHh-cCCCeEEecCCC------CCCCCCceEEEEEEech---------------------
Q 006500 302 RRQTMLFSATLTEDV-DELIKLS-LTKPLRLSADPS------AKRPSTLTEEVVRIRRM--------------------- 352 (643)
Q Consensus 302 ~~q~i~~SAT~~~~~-~~~~~~~-~~~p~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------- 352 (643)
+++||||+.... ......+ +..|+.+..... ...+..+.. +.+...
T Consensus 176 ---~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~--i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 176 ---RLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVE--IKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred ---eeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEE--EEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 899999987333 1111111 111233222111 001111111 111000
Q ss_pred --------------hhhhHHHHHHHHhhcc-CCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhh
Q 006500 353 --------------REVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417 (643)
Q Consensus 353 --------------~~~~~~~~l~~~~~~~-~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~ 417 (643)
....+...+..++... .+.++|||+.+...+..++..|...++ +..+.|.++..+|..+++.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 0000111112222222 467999999999999999999999888 889999999999999999999
Q ss_pred cCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhccc-CCCccE
Q 006500 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR-AGREGY 469 (643)
Q Consensus 418 ~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR-~g~~g~ 469 (643)
.|..++|+++.++.+|+|+|+++++|...+..|+..|+||+||.-| ...++.
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred cCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 9999999999999999999999999999999999999999999999 333443
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.4e-27 Score=264.80 Aligned_cols=320 Identities=20% Similarity=0.214 Sum_probs=236.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHH-HHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL-ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l-~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
+|. .|++.|--+.-.+..|+ |+.+.||+|||+++.+|++ +.+ .. ..+-|++||..||.|.++++..+..
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL-~G------~~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL-TG------KGVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH-cC------CCEEEEecCHHHHHHHHHHHHHHHh
Confidence 455 58889988877676664 9999999999999999996 554 22 1377999999999999999999999
Q ss_pred cCCceEEEEecCCChHHHHHHhcCCCcEEEECchhH-HHHHhccCcc-----CCCCeeEEEEeCCchhccC---------
Q 006500 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLLEL--------- 286 (643)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~~~~-----~l~~i~~lVvDEah~l~~~--------- 286 (643)
+.|+++++++|+.+...+...+ .++|+|+||++| .++|++.... .+..+.++||||||.|+=.
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiS 225 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIIS 225 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeE
Confidence 9999999999998887666554 489999999999 8999875422 3678899999999995410
Q ss_pred C-------hHHHHHHHHHHCCC----------------------------------------------------------
Q 006500 287 G-------FSAEIHELVRLCPK---------------------------------------------------------- 301 (643)
Q Consensus 287 g-------~~~~~~~i~~~~~~---------------------------------------------------------- 301 (643)
| +...+..+...+..
T Consensus 226 g~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~ 305 (830)
T PRK12904 226 GPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDV 305 (830)
T ss_pred CCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 0 11111111111100
Q ss_pred -----------------------------------------------------------CceeEEEeeccchhHHHHHHH
Q 006500 302 -----------------------------------------------------------RRQTMLFSATLTEDVDELIKL 322 (643)
Q Consensus 302 -----------------------------------------------------------~~q~i~~SAT~~~~~~~~~~~ 322 (643)
-.++.+||+|...+..++...
T Consensus 306 dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 385 (830)
T PRK12904 306 DYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI 385 (830)
T ss_pred cEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHH
Confidence 024566777776655555554
Q ss_pred hcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhc--cCCceEEEEeCCHHHHHHHHHHHhhcCCceEEc
Q 006500 323 SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAEL 400 (643)
Q Consensus 323 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~l 400 (643)
+-...+.+... .|......-..+. .....+...+...+.. ..+.++||||+|+..++.++.+|...|+++..|
T Consensus 386 Y~l~vv~IPtn----kp~~r~d~~d~i~-~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vL 460 (830)
T PRK12904 386 YNLDVVVIPTN----RPMIRIDHPDLIY-KTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVL 460 (830)
T ss_pred hCCCEEEcCCC----CCeeeeeCCCeEE-ECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEec
Confidence 43332222211 1211111000111 1223445555555533 456799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCc--------------------------------------cEE
Q 006500 401 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV--------------------------------------QTV 442 (643)
Q Consensus 401 h~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v--------------------------------------~~V 442 (643)
|+. +.+|...+..|+.+...|+|||++|+||+||+-- =||
T Consensus 461 nak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 461 NAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred cCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 995 8899999999999999999999999999999642 379
Q ss_pred EecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHH
Q 006500 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (643)
Q Consensus 443 I~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~ 481 (643)
|....|.|..-.-|-.||+||-|.+|.+..|+|-.|.-+
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 999999999999999999999999999999999887543
No 91
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5e-28 Score=260.55 Aligned_cols=328 Identities=18% Similarity=0.193 Sum_probs=240.4
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006500 138 RACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (643)
Q Consensus 138 ~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 217 (643)
+.+..++|. |..+|++||-++..|..++|+|+|.+|||+++-.++.-.-. .++++++.+|-++|.+|-++.|+
T Consensus 289 e~a~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~------h~TR~iYTSPIKALSNQKfRDFk 361 (1248)
T KOG0947|consen 289 EMALIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK------HMTRTIYTSPIKALSNQKFRDFK 361 (1248)
T ss_pred hHHhhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh------hccceEecchhhhhccchHHHHH
Confidence 344556774 99999999999999999999999999999876555433321 24579999999999999999988
Q ss_pred HHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHH
Q 006500 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297 (643)
Q Consensus 218 ~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~ 297 (643)
.-+.. +++++|+.. +...+.++|+|.+.|...|.++.+ .++++++||+||+|.+.+....-.+.+++-
T Consensus 362 ~tF~D----vgLlTGDvq-------inPeAsCLIMTTEILRsMLYrgad-liRDvE~VIFDEVHYiND~eRGvVWEEViI 429 (1248)
T KOG0947|consen 362 ETFGD----VGLLTGDVQ-------INPEASCLIMTTEILRSMLYRGAD-LIRDVEFVIFDEVHYINDVERGVVWEEVII 429 (1248)
T ss_pred Hhccc----cceeeccee-------eCCCcceEeehHHHHHHHHhcccc-hhhccceEEEeeeeecccccccccceeeee
Confidence 74332 347888754 345678999999999999998643 478899999999999999888888999999
Q ss_pred HCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhh-----------------------
Q 006500 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE----------------------- 354 (643)
Q Consensus 298 ~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 354 (643)
++|+..++|++|||.|+...-.-+..-.+.-.+.+.....+|..+.+.+..-....+
T Consensus 430 MlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ 509 (1248)
T KOG0947|consen 430 MLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKE 509 (1248)
T ss_pred eccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccc
Confidence 999999999999999875543322222222223333344556555555432111000
Q ss_pred ---------------------------------------h---hHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhh
Q 006500 355 ---------------------------------------V---NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL 392 (643)
Q Consensus 355 ---------------------------------------~---~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~ 392 (643)
. .....+...+....--+++|||-+++.|+..+.+|..
T Consensus 510 ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~ 589 (1248)
T KOG0947|consen 510 AKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTN 589 (1248)
T ss_pred ccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhc
Confidence 0 0011122222233334799999999999999999954
Q ss_pred cC---------------------------------------CceEEccCCCCHHHHHHHHHHhhcCCceEEEeccccccc
Q 006500 393 AA---------------------------------------LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (643)
Q Consensus 393 ~~---------------------------------------~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (643)
.+ -.++++||++=+--..-+.-.|..|-++||+||..+++|
T Consensus 590 ~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMG 669 (1248)
T KOG0947|consen 590 LNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMG 669 (1248)
T ss_pred cCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhh
Confidence 32 237789999999999999999999999999999999999
Q ss_pred CCCCCccEEEecCCC---------CChhHHHHHHhhcccCC--CccEEEEEeccC--cHHHHHHH
Q 006500 434 LDIIGVQTVINYACP---------RDLTSYVHRVGRTARAG--REGYAVTFVTDN--DRSLLKAI 485 (643)
Q Consensus 434 lDi~~v~~VI~~d~p---------~s~~~y~Qr~GRagR~g--~~g~~~~l~~~~--d~~~l~~i 485 (643)
+|.|.-.+|+. .+- -+|-.|.|++|||||.| ..|.+++++... +...++.+
T Consensus 670 VNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 670 VNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred cCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhH
Confidence 99997776662 221 26889999999999988 578888887654 33444433
No 92
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.1e-27 Score=264.85 Aligned_cols=147 Identities=20% Similarity=0.290 Sum_probs=129.2
Q ss_pred cCCCCHHHHHHHH-----HCCCCCC---CHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEE
Q 006500 129 ELNLSRPLLRACE-----ALGYSKP---TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (643)
Q Consensus 129 ~l~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vL 200 (643)
.+++.+.+.+.+. .+||..| +|+|.++||.++.++++++.++||+|||++|++|++..++... .++
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~------~v~ 139 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK------PVH 139 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC------CeE
Confidence 4688888888877 6899999 9999999999999999999999999999999999998886431 289
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhH-HHHHhccCccCCC-------Ce
Q 006500 201 ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDLD-------DL 272 (643)
Q Consensus 201 il~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~~~~~l~-------~i 272 (643)
||+||++||.|.++++..+..+.++++.+++||.+...+...+ .++|+|+||++| .+++... .+.++ .+
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~-~~~~~~~~~vqr~~ 216 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDN-SIATRKEEQVGRGF 216 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCC-CCCcCHHHhhcccc
Confidence 9999999999999999999999999999999999988776554 589999999999 9999875 23333 56
Q ss_pred eEEEEeCCchhc
Q 006500 273 AVLILDEADRLL 284 (643)
Q Consensus 273 ~~lVvDEah~l~ 284 (643)
.++||||||.|+
T Consensus 217 ~~~IIDEADsmL 228 (970)
T PRK12899 217 YFAIIDEVDSIL 228 (970)
T ss_pred cEEEEechhhhh
Confidence 899999999976
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.4e-27 Score=260.69 Aligned_cols=321 Identities=20% Similarity=0.240 Sum_probs=228.0
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
+|. .|++.|.-+.-.+..|+ |+.+.||+|||++..+|++-..+.. ..|-|++||--||.|-++++..+..+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G------~~v~vvT~neyLA~Rd~e~~~~~~~~ 147 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTG------KGVHVVTVNEYLSSRDATEMGELYRW 147 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcC------CCeEEEeccHHHHHhhHHHHHHHHHh
Confidence 455 58899988877776666 9999999999999999988777643 34899999999999999999999999
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhH-HHHHhccC-----ccCCCCeeEEEEeCCchhc-c--------CC
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-E--------LG 287 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~l~-~--------~g 287 (643)
.|++++++.++.+....... ..+||+++|...| .++|+... ......+.+.||||+|.++ + .|
T Consensus 148 LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 148 LGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred cCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 99999999988776654433 4679999998765 33444321 1124567899999999854 1 00
Q ss_pred -------hHHHHHHHHHHCCC-----------------------------------------------------------
Q 006500 288 -------FSAEIHELVRLCPK----------------------------------------------------------- 301 (643)
Q Consensus 288 -------~~~~~~~i~~~~~~----------------------------------------------------------- 301 (643)
+...+..+...+..
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 01111111110000
Q ss_pred ---------------------------------------------------------------------CceeEEEeecc
Q 006500 302 ---------------------------------------------------------------------RRQTMLFSATL 312 (643)
Q Consensus 302 ---------------------------------------------------------------------~~q~i~~SAT~ 312 (643)
-.++.+||+|.
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 01345556665
Q ss_pred chhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhh--ccCCceEEEEeCCHHHHHHHHHHH
Q 006500 313 TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILF 390 (643)
Q Consensus 313 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~LIF~~s~~~~~~l~~~L 390 (643)
..+..++...+-...+.+ +. ..|......-..+- .....+...+...+. ...+.++||||+|+..++.++..|
T Consensus 386 ~~e~~Ef~~iY~l~vv~I---Pt-nkp~~r~d~~d~i~-~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L 460 (796)
T PRK12906 386 KTEEEEFREIYNMEVITI---PT-NRPVIRKDSPDLLY-PTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLL 460 (796)
T ss_pred HHHHHHHHHHhCCCEEEc---CC-CCCeeeeeCCCeEE-cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 544444433332221111 11 11211111000110 112334445554442 235789999999999999999999
Q ss_pred hhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCC---Ccc-----EEEecCCCCChhHHHHHHhhcc
Q 006500 391 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---GVQ-----TVINYACPRDLTSYVHRVGRTA 462 (643)
Q Consensus 391 ~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~---~v~-----~VI~~d~p~s~~~y~Qr~GRag 462 (643)
...|+++..||+.+.+.++..+...++.|. |+|||++|+||+||+ +|. +||+++.|.|...|.|+.||||
T Consensus 461 ~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtG 538 (796)
T PRK12906 461 DEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSG 538 (796)
T ss_pred HHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhc
Confidence 999999999999999888888888877776 999999999999994 899 9999999999999999999999
Q ss_pred cCCCccEEEEEeccCcHHH
Q 006500 463 RAGREGYAVTFVTDNDRSL 481 (643)
Q Consensus 463 R~g~~g~~~~l~~~~d~~~ 481 (643)
|.|.+|.+..|++..|.-+
T Consensus 539 RqG~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 539 RQGDPGSSRFYLSLEDDLM 557 (796)
T ss_pred cCCCCcceEEEEeccchHH
Confidence 9999999999999987533
No 94
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=1.2e-27 Score=271.19 Aligned_cols=314 Identities=20% Similarity=0.218 Sum_probs=203.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc--
Q 006500 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-- 222 (643)
Q Consensus 145 ~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~-- 222 (643)
...|+|+|+.+......+..+|+.+|||+|||.++++.+ ..+.... ...+++|.+||++++.|+++.+..+...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A-~~l~~~~---~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYA-WRLIDQG---LADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHH-HHHHHhC---CCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 347999999886554456678899999999999965544 4444322 1346999999999999999999876542
Q ss_pred CCceEEEEecCCChHHHH---------------------HHhc---C---CCcEEEECchhHHHHHhccCccCCCCe---
Q 006500 223 TDIRCCLVVGGLSTKMQE---------------------TALR---S---MPDIVVATPGRMIDHLRNSMSVDLDDL--- 272 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~---------------------~~l~---~---~~~Ivv~Tp~~L~~~l~~~~~~~l~~i--- 272 (643)
....+.+.+|........ ..+. . -.+|+|+|...++..+.......+..+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 245677777764322110 0011 1 268999999998765443322222222
Q ss_pred -eEEEEeCCchhccCChHHHHHHHHHHC-CCCceeEEEeeccchhHHHHHHHhcCC----------CeEEecCCCC----
Q 006500 273 -AVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTK----------PLRLSADPSA---- 336 (643)
Q Consensus 273 -~~lVvDEah~l~~~g~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~----------p~~~~~~~~~---- 336 (643)
++|||||+|..-.. +...+..+++.+ .....+|++|||+|....+.+...+.. |.........
T Consensus 440 ~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 440 RSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred cCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 48999999986432 333444444443 235679999999998776543322111 1000000000
Q ss_pred ---CCCCC-ceEEEEEEech--hh-hhHHHHHHHHhhc-cCCceEEEEeCCHHHHHHHHHHHhhcC---CceEEccCCCC
Q 006500 337 ---KRPST-LTEEVVRIRRM--RE-VNQEAVLLSLCSK-TFTSKVIIFSGTKQAAHRLKILFGLAA---LKAAELHGNLT 405 (643)
Q Consensus 337 ---~~~~~-~~~~~~~~~~~--~~-~~~~~~l~~~~~~-~~~~~~LIF~~s~~~~~~l~~~L~~~~---~~~~~lh~~~~ 405 (643)
..+.. -....+.+... .. ......+..+... ..++++||||||+..+..++..|...+ ..+..+||.++
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 00000 00111111111 00 1112233333332 346789999999999999999998764 67999999999
Q ss_pred HHHH----HHHHHHh-hcCC---ceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCC
Q 006500 406 QAQR----LEALELF-RKQH---VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466 (643)
Q Consensus 406 ~~~R----~~~l~~F-~~g~---~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~ 466 (643)
..+| .++++.| ++|+ ..|||||+++++|||| ++++||....| ...++||+||+||.+.
T Consensus 599 ~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 599 LNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999 4577888 6665 4799999999999999 68999998888 6799999999999775
No 95
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.2e-27 Score=254.19 Aligned_cols=328 Identities=19% Similarity=0.206 Sum_probs=223.3
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCc
Q 006500 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (643)
Q Consensus 130 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Pt 205 (643)
+.++..| +..+.+||++++.|+.. +...|+...||.|||++ .+..|..++.... .. ..+|||||.
T Consensus 196 ~~vPg~I--------~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k-~~-~paLIVCP~ 264 (923)
T KOG0387|consen 196 FKVPGFI--------WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGK-LT-KPALIVCPA 264 (923)
T ss_pred ccccHHH--------HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhccc-cc-CceEEEccH
Confidence 4566666 34678999999999875 57899999999999987 5666777766532 23 359999997
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEecCCChHH--------HHHH-----hcCCCcEEEECchhHHHHHhccCccCCCCe
Q 006500 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM--------QETA-----LRSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (643)
Q Consensus 206 r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~--------~~~~-----l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i 272 (643)
.+..||.+++..|+ +.++|.+++|..+... .+.. ......|+|+|+..+.-. ...+.-..|
T Consensus 265 -Tii~qW~~E~~~w~--p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---~d~l~~~~W 338 (923)
T KOG0387|consen 265 -TIIHQWMKEFQTWW--PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---GDDLLGILW 338 (923)
T ss_pred -HHHHHHHHHHHHhC--cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc---Ccccccccc
Confidence 67789999999986 5688888888766311 1111 223467999999887532 223445579
Q ss_pred eEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccc-hhHHHHHHHh-----------------cCCCeEEecCC
Q 006500 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT-EDVDELIKLS-----------------LTKPLRLSADP 334 (643)
Q Consensus 273 ~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~-~~~~~~~~~~-----------------~~~p~~~~~~~ 334 (643)
.++|+||+|++-|.. ..+...+..++ ..+.|++|.|+- +.+.++..++ +..|+......
T Consensus 339 ~y~ILDEGH~IrNpn--s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Ggya 415 (923)
T KOG0387|consen 339 DYVILDEGHRIRNPN--SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYA 415 (923)
T ss_pred cEEEecCcccccCCc--cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccC
Confidence 999999999987643 33333333333 234456666642 3333332111 00010000000
Q ss_pred CC----------------------------------CCCCCceEEEEEE-------------------------------
Q 006500 335 SA----------------------------------KRPSTLTEEVVRI------------------------------- 349 (643)
Q Consensus 335 ~~----------------------------------~~~~~~~~~~~~~------------------------------- 349 (643)
.. ..| .-.+.++.|
T Consensus 416 NAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp-~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~ 494 (923)
T KOG0387|consen 416 NASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLP-KKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLS 494 (923)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCC-CccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCcccee
Confidence 00 000 000000111
Q ss_pred -----------------------------echhhhhHHHHHHHHhh--ccCCceEEEEeCCHHHHHHHHHHHh-hcCCce
Q 006500 350 -----------------------------RRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFG-LAALKA 397 (643)
Q Consensus 350 -----------------------------~~~~~~~~~~~l~~~~~--~~~~~~~LIF~~s~~~~~~l~~~L~-~~~~~~ 397 (643)
.......+..++..++. ...+.++|+|.+++.+...|..+|. ..++++
T Consensus 495 Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysy 574 (923)
T KOG0387|consen 495 GIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSY 574 (923)
T ss_pred chHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceE
Confidence 01112223334444333 2346799999999999999999999 689999
Q ss_pred EEccCCCCHHHHHHHHHHhhcCCce--EEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccE--EEEE
Q 006500 398 AELHGNLTQAQRLEALELFRKQHVD--FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY--AVTF 473 (643)
Q Consensus 398 ~~lh~~~~~~~R~~~l~~F~~g~~~--vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~--~~~l 473 (643)
+.+.|.++...|..++++|+++..- +|++|.+++.|+|+.+++.||+||+.|||....|..-||.|.|++.. +|.|
T Consensus 575 lRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL 654 (923)
T KOG0387|consen 575 LRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRL 654 (923)
T ss_pred EEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEE
Confidence 9999999999999999999987643 78999999999999999999999999999999999999999997754 5556
Q ss_pred eccCc
Q 006500 474 VTDND 478 (643)
Q Consensus 474 ~~~~d 478 (643)
++..+
T Consensus 655 ~t~gT 659 (923)
T KOG0387|consen 655 MTAGT 659 (923)
T ss_pred ecCCc
Confidence 77664
No 96
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=6.8e-28 Score=262.05 Aligned_cols=299 Identities=18% Similarity=0.208 Sum_probs=195.3
Q ss_pred EEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHH---H
Q 006500 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---A 242 (643)
Q Consensus 166 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~---~ 242 (643)
++.|+||||||.+|+..+ ...+.. +.++||++|+++|+.|+++.+++.. +..+..++|+.+...... .
T Consensus 1 LL~g~TGsGKT~v~l~~i-~~~l~~-----g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAI-EKVLAL-----GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHH-HHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHH
Confidence 478999999999975544 444432 3369999999999999999998753 567888899877654322 2
Q ss_pred -hcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC-----hH-HHHHHHHHHCCCCceeEEEeeccchh
Q 006500 243 -LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----FS-AEIHELVRLCPKRRQTMLFSATLTED 315 (643)
Q Consensus 243 -l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g-----~~-~~~~~i~~~~~~~~q~i~~SAT~~~~ 315 (643)
..+..+|||+|+..+. ..+.++++|||||+|...-++ |. ..+. ++.....+.++|++|||++.+
T Consensus 72 ~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a-~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVA-VYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHH-HHHHHhcCCCEEEEeCCCCHH
Confidence 3356899999998763 246778999999999876433 11 1222 233334578899999998765
Q ss_pred HHHHHHHhcCCCeEE-ecCCCCCCCCCceEEEEEEechh--hhhHHHHHHHHhhc-cCCceEEEEeCCHHH---------
Q 006500 316 VDELIKLSLTKPLRL-SADPSAKRPSTLTEEVVRIRRMR--EVNQEAVLLSLCSK-TFTSKVIIFSGTKQA--------- 382 (643)
Q Consensus 316 ~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~~~~~~LIF~~s~~~--------- 382 (643)
....+.. ..... ...............++...... .......+..+... ..+.++|||+|++..
T Consensus 143 s~~~~~~---g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 143 SYHNAKQ---KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HHHHHhc---CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhC
Confidence 4443321 11111 11110000000111111111110 00011122222221 224679999766432
Q ss_pred ---------------------------------------------------HHHHHHHHhhc--CCceEEccCCCCHHHH
Q 006500 383 ---------------------------------------------------AHRLKILFGLA--ALKAAELHGNLTQAQR 409 (643)
Q Consensus 383 ---------------------------------------------------~~~l~~~L~~~--~~~~~~lh~~~~~~~R 409 (643)
.+++.+.|... +.++..+|+++++..+
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCcc
Confidence 46677777765 7899999999988766
Q ss_pred --HHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCC------------ChhHHHHHHhhcccCCCccEEEEEec
Q 006500 410 --LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------DLTSYVHRVGRTARAGREGYAVTFVT 475 (643)
Q Consensus 410 --~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~------------s~~~y~Qr~GRagR~g~~g~~~~l~~ 475 (643)
..+++.|++|+.+|||+|+++++|+|+|+|++|+.++.+. ..+.|.|++||+||.+..|.+++...
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8999999999999999999999999999999986444332 24678999999999999999997655
Q ss_pred cCcHHHHHHH
Q 006500 476 DNDRSLLKAI 485 (643)
Q Consensus 476 ~~d~~~l~~i 485 (643)
..+...+..+
T Consensus 380 ~p~~~~~~~~ 389 (505)
T TIGR00595 380 NPNHPAIQAA 389 (505)
T ss_pred CCCCHHHHHH
Confidence 4444444443
No 97
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.2e-26 Score=246.99 Aligned_cols=324 Identities=23% Similarity=0.253 Sum_probs=236.6
Q ss_pred CCCCHHHHH-HHHHCCCCCCCHHHHHHHHHHhcC------CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEE
Q 006500 130 LNLSRPLLR-ACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (643)
Q Consensus 130 l~l~~~l~~-~l~~~g~~~~~~~Q~~~i~~~l~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil 202 (643)
++.+..+++ .+..+.|. ||..|+.++..|... -+-+++|.-|||||+++++.++..+- .|.++..+
T Consensus 245 ~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------~G~Q~ALM 317 (677)
T COG1200 245 LPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------AGYQAALM 317 (677)
T ss_pred CCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------cCCeeEEe
Confidence 344555444 44778885 999999999999874 36789999999999999999988874 34579999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHH---h-cCCCcEEEECchhHHHHHhccCccCCCCeeEEEEe
Q 006500 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA---L-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (643)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~---l-~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvD 278 (643)
+||--||.|.++.+.+|....++++..++|.......... + .+..+|||+|-.-+. . ...+.++.++|+|
T Consensus 318 APTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ----d--~V~F~~LgLVIiD 391 (677)
T COG1200 318 APTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ----D--KVEFHNLGLVIID 391 (677)
T ss_pred ccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh----c--ceeecceeEEEEe
Confidence 9999999999999999999999999999998776654433 2 345899999954432 2 5778899999999
Q ss_pred CCchhccCChHHHHHHHHHHCCC-CceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhH
Q 006500 279 EADRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (643)
Q Consensus 279 Eah~l~~~g~~~~~~~i~~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (643)
|=|| |.-.-...+..-.. .+.+++||||+-|....+....- ..+++.. ..|++-......+-. ....
T Consensus 392 EQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgD---ldvS~Id--ElP~GRkpI~T~~i~--~~~~ 459 (677)
T COG1200 392 EQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGD---LDVSIID--ELPPGRKPITTVVIP--HERR 459 (677)
T ss_pred cccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhcc---ccchhhc--cCCCCCCceEEEEec--cccH
Confidence 9999 44333334443334 67899999999776554433211 1122211 122221111111111 1112
Q ss_pred HHHHHHHhh-ccCCceEEEEeCCHH--------HHHHHHHHHhhc--CCceEEccCCCCHHHHHHHHHHhhcCCceEEEe
Q 006500 358 EAVLLSLCS-KTFTSKVIIFSGTKQ--------AAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (643)
Q Consensus 358 ~~~l~~~~~-~~~~~~~LIF~~s~~--------~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLva 426 (643)
...+..+.. -..+..+.|.|+-++ .+..+...|... +++++.+||.|+..+..+++..|++|+.+||||
T Consensus 460 ~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVa 539 (677)
T COG1200 460 PEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVA 539 (677)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEE
Confidence 222222221 124678888898654 444555666532 677999999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEecCCCC-ChhHHHHHHhhcccCCCccEEEEEeccCc
Q 006500 427 TDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDND 478 (643)
Q Consensus 427 T~~~~~GlDi~~v~~VI~~d~p~-s~~~y~Qr~GRagR~g~~g~~~~l~~~~d 478 (643)
|.+.+-|+|+|+++++|+++.-. ...+.-|-.||+||.+.++.|++++.+..
T Consensus 540 TTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 540 TTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred eeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999999988654 67788899999999889999999998876
No 98
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.1e-27 Score=264.86 Aligned_cols=310 Identities=19% Similarity=0.212 Sum_probs=222.9
Q ss_pred CHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh-cCCceE
Q 006500 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRC 227 (643)
Q Consensus 149 ~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~-~~~~~v 227 (643)
+....+.+..+.++.-+|++|+||||||++....+++..+ ..++++.++.|+|..|.-+++.+.+... ..|-.|
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 4556667777778888999999999999986666776654 2345799999999888887776655432 234455
Q ss_pred EEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchh-ccCChHHH-HHHHHHHCCCCcee
Q 006500 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELGFSAE-IHELVRLCPKRRQT 305 (643)
Q Consensus 228 ~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l-~~~g~~~~-~~~i~~~~~~~~q~ 305 (643)
++.+-. .......+.|-++|.|.|+..+.+ +..|+.+++|||||||+- ++..|.-- +..++...+.+.++
T Consensus 127 GY~iRf------e~~~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 127 GYSIRF------ESKVSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eEEEEe------eccCCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 554443 223455678999999999999987 566999999999999964 35444433 34456666767999
Q ss_pred EEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEe-chh-hhhHHHHHHHHhhccCCceEEEEeCCHHHH
Q 006500 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMR-EVNQEAVLLSLCSKTFTSKVIIFSGTKQAA 383 (643)
Q Consensus 306 i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~ 383 (643)
|++|||+.. ..+...+-.-|+ +.+... ..| +.-.+.... ... .................+.+|||.+....+
T Consensus 199 IimSATld~--~rfs~~f~~apv-i~i~GR-~fP--Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 199 IIMSATLDA--ERFSAYFGNAPV-IEIEGR-TYP--VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEEecccCH--HHHHHHcCCCCE-EEecCC-ccc--eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 999999974 333333333443 333211 111 111111111 111 111122223334455578999999999999
Q ss_pred HHHHHHHhh----cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCC-----------
Q 006500 384 HRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP----------- 448 (643)
Q Consensus 384 ~~l~~~L~~----~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p----------- 448 (643)
+++...|.. ..+.+.+|||.|+..++.++++.-..|..+|++||++|+++|.|++|++||.-+.-
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 999999987 35789999999999999999998888888899999999999999999999964432
Q ss_pred -------CChhHHHHHHhhcccCCCccEEEEEeccCc
Q 006500 449 -------RDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (643)
Q Consensus 449 -------~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d 478 (643)
-|-.+..||.|||||.+ +|.||.+++..+
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred eeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 25667889999999976 999999999854
No 99
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.6e-29 Score=252.62 Aligned_cols=403 Identities=16% Similarity=0.194 Sum_probs=268.9
Q ss_pred CCCCHHHHHHHHHHhcC---CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 146 SKPTPIQAACIPLALTG---RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 146 ~~~~~~Q~~~i~~~l~g---~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
..++|||..++..++.+ +..||+.|+|+|||++ .+.+...+.+ ++||||.+...+.||...+..|+..
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLV-GvTAa~tikK--------~clvLcts~VSVeQWkqQfk~wsti 371 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLV-GVTAACTIKK--------SCLVLCTSAVSVEQWKQQFKQWSTI 371 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCcee-eeeeeeeecc--------cEEEEecCccCHHHHHHHHHhhccc
Confidence 46899999999999985 7899999999999987 5555555533 4999999999999999999999887
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccC-------ccCCCCeeEEEEeCCchhccCChHHHHHHH
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-------SVDLDDLAVLILDEADRLLELGFSAEIHEL 295 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~-------~~~l~~i~~lVvDEah~l~~~g~~~~~~~i 295 (643)
.+-.++.++..... ....++.|+|+|+..+..--.+.. .+.-..|+++|+||+|.+....|+..+.-+
T Consensus 372 ~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv 446 (776)
T KOG1123|consen 372 QDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIV 446 (776)
T ss_pred CccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHH
Confidence 77777777776432 245678999999866532111100 112346999999999999988899888877
Q ss_pred HHHCCCCceeEEEeeccchhHHHHHHHhc-CCCeEE---------------------------ecCCCCCCCCCceEEEE
Q 006500 296 VRLCPKRRQTMLFSATLTEDVDELIKLSL-TKPLRL---------------------------SADPSAKRPSTLTEEVV 347 (643)
Q Consensus 296 ~~~~~~~~q~i~~SAT~~~~~~~~~~~~~-~~p~~~---------------------------~~~~~~~~~~~~~~~~~ 347 (643)
-.++. +++|||+-.+-..+..+.+ -.|-.+ .+.....+...-.....
T Consensus 447 ~aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lL 521 (776)
T KOG1123|consen 447 QAHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLL 521 (776)
T ss_pred HHHhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhee
Confidence 77775 8999999754333322211 111000 00001111112222334
Q ss_pred EEechhhhhHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcC-CceEEEe
Q 006500 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIA 426 (643)
Q Consensus 348 ~~~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g-~~~vLva 426 (643)
.+....+.....+|..++.+ .+.++|||..+.-....++..|+.. .|+|.++|.+|+++++.|+-+ .++.++-
T Consensus 522 yvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~Kp-----fIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 522 YVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGKP-----FIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred eecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCCc-----eEECCCchhHHHHHHHhcccCCccceEEE
Confidence 44445555566667666655 6889999999998888888777654 789999999999999999964 6888999
Q ss_pred cccccccCCCCCccEEEecCCCC-ChhHHHHHHhhcccCC------CccEEEEEeccCcHHHHHHHHHHhcCcccccchh
Q 006500 427 TDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAG------REGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 499 (643)
Q Consensus 427 T~~~~~GlDi~~v~~VI~~d~p~-s~~~y~Qr~GRagR~g------~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~~~~~ 499 (643)
+.++...||+|.++++|+...-. |..+-.||.||.-|+- -....|+|++.++..|...-.++. ..++
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ~------FLid 669 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQQ------FLID 669 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhhh------hhhh
Confidence 99999999999999999654332 7788899999999863 346789999999999888776653 5566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccccccHHHHHHHhhhcHhhHhhc
Q 006500 500 EQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKG 579 (643)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (643)
+....+..+.+..++..-...+....++..+.+..+.......-++...+- + +...+..+..+++..+.++
T Consensus 670 QGYsfkVit~L~gme~~~~l~y~skeeq~~LLq~Vl~a~d~~~e~E~~~~~-~--------~~~~~a~r~~gslssmsGg 740 (776)
T KOG1123|consen 670 QGYSFKVITNLPGMENLEDLAYASKEEQLELLQKVLLASDLDAELEDLEDE-S--------RASSKAVRSEGSLSSMSGG 740 (776)
T ss_pred cCceEEEeecCCCcCcCcccccCCHHHHHHHHHHHHhcchhhhcccccccc-c--------cccccceecccccccccCC
Confidence 655555444444443322222333333444443333332221111111111 0 1223333445666667777
Q ss_pred cCCCCccchhh
Q 006500 580 KGSGNEVTSAQ 590 (643)
Q Consensus 580 ~~~~~~~~~~~ 590 (643)
.++ .+++..
T Consensus 741 d~m--~Y~ey~ 749 (776)
T KOG1123|consen 741 DDM--AYMEYN 749 (776)
T ss_pred Ccc--eeeeec
Confidence 555 777754
No 100
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.95 E-value=9.7e-27 Score=245.22 Aligned_cols=309 Identities=15% Similarity=0.141 Sum_probs=214.7
Q ss_pred CHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh-hcCCceE
Q 006500 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA-QFTDIRC 227 (643)
Q Consensus 149 ~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~-~~~~~~v 227 (643)
..+-.+++..+..++-+|+.|+||||||++....+.+..... .+++.|..|+|..|.-++..+..-. ...|-.|
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~-----~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS-----SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc-----CCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 445567788888889999999999999997444444443332 2349999999998887776555432 2244455
Q ss_pred EEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHH---CCCCce
Q 006500 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL---CPKRRQ 304 (643)
Q Consensus 228 ~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~---~~~~~q 304 (643)
++.+.-.+ .....+.|.++|.|.|++.+.. +..|+.+++|||||||.-.- +.+.+.-+++. -.+..+
T Consensus 128 GY~IRFed------~ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl--~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 128 GYTIRFED------STSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSL--HTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eeEEEecc------cCCCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhh--HHHHHHHHHHHHHhcCCCce
Confidence 55443322 2234578999999999998877 56789999999999996431 12222223222 234568
Q ss_pred eEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEe-chhhhhHHHHHHHHhhccCCceEEEEeCCHHHH
Q 006500 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAA 383 (643)
Q Consensus 305 ~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~ 383 (643)
+|++|||+.. ..+...|...|+. .+. ....| +...+...+ .............++...+++-+|||.++.+++
T Consensus 198 lIimSATlda--~kfS~yF~~a~i~-~i~-GR~fP--Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEI 271 (674)
T KOG0922|consen 198 LIIMSATLDA--EKFSEYFNNAPIL-TIP-GRTFP--VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEI 271 (674)
T ss_pred EEEEeeeecH--HHHHHHhcCCceE-eec-CCCCc--eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Confidence 9999999973 3333333333433 221 11111 222222111 111222233445566667788999999999999
Q ss_pred HHHHHHHhhc----CC----ceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecC--------C
Q 006500 384 HRLKILFGLA----AL----KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA--------C 447 (643)
Q Consensus 384 ~~l~~~L~~~----~~----~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d--------~ 447 (643)
+.+...|.+. +- -+..+||.|+..++.+++..-..|..+|+++|++++..|.|+|+.+||.-+ +
T Consensus 272 e~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p 351 (674)
T KOG0922|consen 272 EAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNP 351 (674)
T ss_pred HHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecc
Confidence 9998888764 11 246899999999999999999999999999999999999999999999533 2
Q ss_pred ----------CCChhHHHHHHhhcccCCCccEEEEEeccCcH
Q 006500 448 ----------PRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (643)
Q Consensus 448 ----------p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~ 479 (643)
|-|-.+-.||.|||||.| +|+|+.++++.+.
T Consensus 352 ~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 352 RTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred ccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 336778889999999976 9999999998764
No 101
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.95 E-value=1.7e-26 Score=256.83 Aligned_cols=147 Identities=22% Similarity=0.277 Sum_probs=127.3
Q ss_pred cCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecC-
Q 006500 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA- 446 (643)
Q Consensus 368 ~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d- 446 (643)
..+.++||||+|+..+++|..+|...|+++..+||++++.+|..++..|+.|++.|||||+++++|+|+|++++||++|
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Da 519 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA 519 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCc
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ----CCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcCcccccchhhhhHHHHHHHHHHHHH
Q 006500 447 ----CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMED 515 (643)
Q Consensus 447 ----~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (643)
.|.+..+|+||+|||||. ..|.+++|+...+..+...|.+....+-.+..++..+...+.++.+.+.+
T Consensus 520 difG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~~~~~~iq~~~~~~~~~~p~~~~~~~~~ 591 (655)
T TIGR00631 520 DKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRD 591 (655)
T ss_pred ccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHhHHHHHhhhhhhcCCCCcccCcchHH
Confidence 799999999999999997 68999999999999999998887433333355555555555555444433
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-25 Score=248.94 Aligned_cols=321 Identities=18% Similarity=0.188 Sum_probs=227.9
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
+|. .|+++|--+--.+. ..-|+.++||.|||++|.+|++.+.+.. ..|.||+|+..||.|.++++..+..+
T Consensus 79 lgm-~~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al~g------~~VhIvT~ndyLA~RD~e~m~~l~~~ 149 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNALTG------KGVHVITVNDYLARRDAENNRPLFEF 149 (908)
T ss_pred hCC-CcCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHhcC------CCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 455 47778876655554 4458999999999999999999877643 23999999999999999999999999
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhH-HHHHhccCccCC-----CCeeEEEEeCCchhccC---------C
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDL-----DDLAVLILDEADRLLEL---------G 287 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~~~~~l-----~~i~~lVvDEah~l~~~---------g 287 (643)
.|++++++.++.+... ..-.+.+||+++||+.| .++|+....... ..+.++||||||.++-. |
T Consensus 150 lGlsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg 227 (908)
T PRK13107 150 LGLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISG 227 (908)
T ss_pred cCCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecC
Confidence 9999999999877633 33345789999999999 888887533333 77889999999986521 0
Q ss_pred -------hHHHHH----HHHHH------------------------------------C---------------------
Q 006500 288 -------FSAEIH----ELVRL------------------------------------C--------------------- 299 (643)
Q Consensus 288 -------~~~~~~----~i~~~------------------------------------~--------------------- 299 (643)
+...+. .+... +
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~ 307 (908)
T PRK13107 228 AAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLL 307 (908)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHH
Confidence 001011 11100 0
Q ss_pred -------------CCC-------------------------------------------------------------cee
Q 006500 300 -------------PKR-------------------------------------------------------------RQT 305 (643)
Q Consensus 300 -------------~~~-------------------------------------------------------------~q~ 305 (643)
.++ .++
T Consensus 308 ~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (908)
T PRK13107 308 HHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKL 387 (908)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHh
Confidence 000 123
Q ss_pred EEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhh--ccCCceEEEEeCCHHHH
Q 006500 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAA 383 (643)
Q Consensus 306 i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~LIF~~s~~~~ 383 (643)
-+||+|...+..++...+-...+.+.......+. .....+.. ....+...+..-+. ...+.++||||.|+..+
T Consensus 388 ~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~-d~~d~iy~----t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 388 AGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRK-DMADLVYL----TADEKYQAIIKDIKDCRERGQPVLVGTVSIEQS 462 (908)
T ss_pred hcccCCChHHHHHHHHHhCCCEEECCCCCCccce-eCCCcEEe----CHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHH
Confidence 4455555444444443332222222111111111 11111111 11223333222221 23477999999999999
Q ss_pred HHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCC--------------------------
Q 006500 384 HRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII-------------------------- 437 (643)
Q Consensus 384 ~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~-------------------------- 437 (643)
+.++.+|...|+++..||+.+++.++..+.+.|+.|. |+|||++|+||+||.
T Consensus 463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~ 540 (908)
T PRK13107 463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKAD 540 (908)
T ss_pred HHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999998 999999999999996
Q ss_pred -----------CccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHH
Q 006500 438 -----------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (643)
Q Consensus 438 -----------~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~ 481 (643)
|==+||-...+.|..--.|-.||+||-|.+|.+..|+|-.|.-+
T Consensus 541 ~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 541 WQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 22379999999999999999999999999999999999887533
No 103
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.95 E-value=6.5e-28 Score=266.35 Aligned_cols=329 Identities=19% Similarity=0.256 Sum_probs=224.4
Q ss_pred CCCCHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 146 SKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 146 ~~~~~~Q~~~i~~~l~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
..++.||-+.++|++. ++++|++..+|.|||++ .+..|..++.... ..| .+|||+|...+.. |...|..|+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~-~~g-pflvvvplst~~~-W~~ef~~w~- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ-IHG-PFLVVVPLSTITA-WEREFETWT- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh-ccC-CeEEEeehhhhHH-HHHHHHHHh-
Confidence 5799999999999876 68999999999999987 6666666665432 223 3899999987754 667777775
Q ss_pred cCCceEEEEecCCChHHHHHH----hcC-----CCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHH
Q 006500 222 FTDIRCCLVVGGLSTKMQETA----LRS-----MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292 (643)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~----l~~-----~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~ 292 (643)
.+++.+++|.......... ... .+++++||++.++.- ...+.--.|.+++|||||+|.|.. ..+
T Consensus 444 --~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD---k~~L~~i~w~~~~vDeahrLkN~~--~~l 516 (1373)
T KOG0384|consen 444 --DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD---KAELSKIPWRYLLVDEAHRLKNDE--SKL 516 (1373)
T ss_pred --hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc---HhhhccCCcceeeecHHhhcCchH--HHH
Confidence 7888888998655443322 122 479999999998542 222333458899999999998742 223
Q ss_pred HHHHHHCCCCceeEEEeeccc-hhHHHHHHHh-cCCCeEEe---------------------------------cCCCCC
Q 006500 293 HELVRLCPKRRQTMLFSATLT-EDVDELIKLS-LTKPLRLS---------------------------------ADPSAK 337 (643)
Q Consensus 293 ~~i~~~~~~~~q~i~~SAT~~-~~~~~~~~~~-~~~p~~~~---------------------------------~~~~~~ 337 (643)
...+..+.... .+++|.|+- +.+.++..+. +..|..+. -+.+..
T Consensus 517 ~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 517 YESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 33344333322 366777764 3444443221 11111100 000000
Q ss_pred CCCCceEEEEEEe-------------------------------------------------chhh-----h---hHHHH
Q 006500 338 RPSTLTEEVVRIR-------------------------------------------------RMRE-----V---NQEAV 360 (643)
Q Consensus 338 ~~~~~~~~~~~~~-------------------------------------------------~~~~-----~---~~~~~ 360 (643)
.|+. .+.++++. .... . .....
T Consensus 596 lp~k-~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 596 LPPK-EETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCC-cceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 1111 11111111 0000 0 00112
Q ss_pred HHHHh-------------h--ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhc---CCce
Q 006500 361 LLSLC-------------S--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK---QHVD 422 (643)
Q Consensus 361 l~~~~-------------~--~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~---g~~~ 422 (643)
|..++ . +..+++||||.+.+.+.+.|+.||...++++-.|.|.+...-|..++++|+. ..+-
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 22221 1 3347899999999999999999999999999999999999999999999996 3677
Q ss_pred EEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCcc--EEEEEeccCc--HHHHHHHHHH
Q 006500 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG--YAVTFVTDND--RSLLKAIAKR 488 (643)
Q Consensus 423 vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g--~~~~l~~~~d--~~~l~~i~~~ 488 (643)
+|+||.+++.|||+..+++||+||..|||+..+|...||+|+|++. .+|.|++.+. ..++.+....
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~K 824 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLK 824 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875 4677788875 4555554444
No 104
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=1.5e-25 Score=251.30 Aligned_cols=331 Identities=22% Similarity=0.235 Sum_probs=252.4
Q ss_pred CCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhc----C--CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc
Q 006500 131 NLSRPLLRAC-EALGYSKPTPIQAACIPLALT----G--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 131 ~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~l~----g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
+.+...+..+ ..++|. -|+-|..||..+.. + -|-++||.-|-|||-+++=+++-.+.. +.+|.||+
T Consensus 578 ~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~------GKQVAvLV 650 (1139)
T COG1197 578 PPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD------GKQVAVLV 650 (1139)
T ss_pred CCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC------CCeEEEEc
Confidence 3344444433 456775 79999999998876 3 489999999999999877777777643 45799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHh----cCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeC
Q 006500 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (643)
||.-||.|.++.|+.-+...+++|..+..-.+.+.+...+ .+..||||+|--- |.. ++.+.++++|||||
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL----L~k--dv~FkdLGLlIIDE 724 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL----LSK--DVKFKDLGLLIIDE 724 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHh----hCC--CcEEecCCeEEEec
Confidence 9999999999999998888899999998888877766554 3568999999422 323 67899999999999
Q ss_pred CchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechh-hhhHH
Q 006500 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR-EVNQE 358 (643)
Q Consensus 280 ah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 358 (643)
=|+ |.-.-.+-++.+..+.-++-+|||+-|....+.-..++.--.+...+.. +.+ .+.++ .... ...+.
T Consensus 725 EqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~-R~p--V~T~V--~~~d~~~ire 794 (1139)
T COG1197 725 EQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED-RLP--VKTFV--SEYDDLLIRE 794 (1139)
T ss_pred hhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC-Ccc--eEEEE--ecCChHHHHH
Confidence 999 5555566666677788899999999887776665555543233322222 221 11111 2222 22222
Q ss_pred HHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhc--CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCC
Q 006500 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (643)
Q Consensus 359 ~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi 436 (643)
.++..+ ..+|.+-...|.++..+.++..|..+ ..+++..||.|+..+-.+++..|-+|+++|||||-+.+.||||
T Consensus 795 AI~REl---~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDI 871 (1139)
T COG1197 795 AILREL---LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDI 871 (1139)
T ss_pred HHHHHH---hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCC
Confidence 222222 23678888889999999999999876 5678999999999999999999999999999999999999999
Q ss_pred CCccEEEecCCCC-ChhHHHHHHhhcccCCCccEEEEEeccCc------HHHHHHHHH
Q 006500 437 IGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDND------RSLLKAIAK 487 (643)
Q Consensus 437 ~~v~~VI~~d~p~-s~~~y~Qr~GRagR~g~~g~~~~l~~~~d------~~~l~~i~~ 487 (643)
|+++++|.-+... ...+..|..||+||.++.|.||.++.+.. .+.++.|.+
T Consensus 872 PnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 872 PNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred CCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 9999999777665 67899999999999999999999998643 455666665
No 105
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=9.6e-26 Score=218.96 Aligned_cols=313 Identities=20% Similarity=0.224 Sum_probs=223.1
Q ss_pred CCCHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 147 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
++++.|+.+-..++. ..+.|++|.||+|||-. +.+.++..+.. |.++.|.+|+...|..++..++. .|
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-----G~~vciASPRvDVclEl~~Rlk~--aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-----GGRVCIASPRVDVCLELYPRLKQ--AF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-----CCeEEEecCcccchHHHHHHHHH--hh
Confidence 689999988777665 57999999999999986 67777777654 55799999999999999999887 45
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCC
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~ 302 (643)
.+..+.+++|+..... ...++|+|...|++.-.. ++++||||+|...-..-......+.+.....
T Consensus 169 ~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~a--------FD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 169 SNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQA--------FDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred ccCCeeeEecCCchhc-------cccEEEEehHHHHHHHhh--------ccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 6788899999865432 268999999999886543 6799999999875322222223344445556
Q ss_pred ceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhH----HHHHHHHhh--ccCCceEEEE
Q 006500 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ----EAVLLSLCS--KTFTSKVIIF 376 (643)
Q Consensus 303 ~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~--~~~~~~~LIF 376 (643)
.-+|++|||++..+..-+...-..++ .+.......+-..-.++++........ ...+..++. ...+.++|||
T Consensus 234 g~~IylTATp~k~l~r~~~~g~~~~~--klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 234 GATIYLTATPTKKLERKILKGNLRIL--KLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred CceEEEecCChHHHHHHhhhCCeeEe--ecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 67899999999887765543222222 221122222222233444443322211 123444443 2335799999
Q ss_pred eCCHHHHHHHHHHHhhc--CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCC--CCChh
Q 006500 377 SGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC--PRDLT 452 (643)
Q Consensus 377 ~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~--p~s~~ 452 (643)
+++....+.++..|+.. ...++..|+. ...|.+..+.|++|+.++||+|.+++||+.+|+|+++|.-.- -.+.+
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 99999999999999543 4456788884 467899999999999999999999999999999998663221 13788
Q ss_pred HHHHHHhhcccCC--CccEEEEEeccCcHHHHHHHH
Q 006500 453 SYVHRVGRTARAG--REGYAVTFVTDNDRSLLKAIA 486 (643)
Q Consensus 453 ~y~Qr~GRagR~g--~~g~~~~l~~~~d~~~l~~i~ 486 (643)
..+|..||+||.- ..|.++.|-......|...+.
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~k 425 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARK 425 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHH
Confidence 9999999999943 457877776666666665543
No 106
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.2e-25 Score=252.11 Aligned_cols=320 Identities=20% Similarity=0.224 Sum_probs=236.2
Q ss_pred HHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006500 140 CEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (643)
Q Consensus 140 l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l 219 (643)
...+||. |.++|++++..+..|.+|+++||||||||.+.-.++...+.. +.++++++|.++|..|.+..+...
T Consensus 113 ~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~------~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 113 AREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD------GQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred HHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc------CCceEeccchhhhhhhHHHHHHHH
Confidence 3566785 999999999999999999999999999998865555544432 234999999999999999888764
Q ss_pred hhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHC
Q 006500 220 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (643)
Q Consensus 220 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~ 299 (643)
.....-.+++++|+.+ +...+.|+|+|.+.|.+.+... ...+..+.+||+||+|.|.+......+++++-++
T Consensus 186 fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 186 FGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred hhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 4322334577788754 4567899999999999998875 5678999999999999999988889999999999
Q ss_pred CCCceeEEEeeccchhHHH--HHHHhcCCCeEEecCCCCCCCCCceEEEEEEec-------hhh---hh---HH------
Q 006500 300 PKRRQTMLFSATLTEDVDE--LIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR-------MRE---VN---QE------ 358 (643)
Q Consensus 300 ~~~~q~i~~SAT~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~---~~------ 358 (643)
|...|+++||||+++...- .+...-..|..+.. ...+|..+.+++..-.. ... .. ..
T Consensus 258 P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~--t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~ 335 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS--TEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCF 335 (1041)
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe--ecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhcc
Confidence 9999999999999865443 33332344444433 33456555554322100 000 00 00
Q ss_pred --------------------------------HHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhc-------------
Q 006500 359 --------------------------------AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------------- 393 (643)
Q Consensus 359 --------------------------------~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~------------- 393 (643)
..+...+......++|+|+-++..|+.++..+...
T Consensus 336 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~ 415 (1041)
T COG4581 336 SEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIR 415 (1041)
T ss_pred chhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHH
Confidence 00111111122347999999999999887666311
Q ss_pred ---------------CC-------------ceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEE--
Q 006500 394 ---------------AL-------------KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI-- 443 (643)
Q Consensus 394 ---------------~~-------------~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI-- 443 (643)
++ .++++|++|=+..+..+-..|..|-++||++|.+++.|+|.|.-++|+
T Consensus 416 ~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~ 495 (1041)
T COG4581 416 EIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTS 495 (1041)
T ss_pred HHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeee
Confidence 11 245789999999999999999999999999999999999998776665
Q ss_pred --ecC----CCCChhHHHHHHhhcccCCC--ccEEEEEecc
Q 006500 444 --NYA----CPRDLTSYVHRVGRTARAGR--EGYAVTFVTD 476 (643)
Q Consensus 444 --~~d----~p~s~~~y~Qr~GRagR~g~--~g~~~~l~~~ 476 (643)
.+| .+-++..|.|+.|||||.|. .|.+++...+
T Consensus 496 l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 496 LSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred eEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 122 23378999999999999884 5888888544
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=1.3e-25 Score=261.58 Aligned_cols=305 Identities=20% Similarity=0.250 Sum_probs=196.4
Q ss_pred CCCHHHHHHHHHHhc-----CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 147 KPTPIQAACIPLALT-----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~-----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
.+++||.+||..+.. .+.++++++||||||.+ ++.++..++... ...+||||+|+++|+.|+.+.|..+..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~t-ai~li~~L~~~~---~~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRT-AIALMYRLLKAK---RFRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHH-HHHHHHHHHhcC---ccCeEEEEecHHHHHHHHHHHHHhccc
Confidence 589999999987763 36899999999999988 455666665432 234799999999999999999987632
Q ss_pred cCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhcc----CccCCCCeeEEEEeCCchhcc---------CC-
Q 006500 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLE---------LG- 287 (643)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~----~~~~l~~i~~lVvDEah~l~~---------~g- 287 (643)
.....+..+++..... .........|+|+|+..|...+... ..+.+..+++|||||||+-.. .+
T Consensus 489 ~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 489 EGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred ccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 2221221122211111 1112345789999999997765321 124567889999999999531 11
Q ss_pred -----hHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCe---------------------EEecCCC--CCC-
Q 006500 288 -----FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL---------------------RLSADPS--AKR- 338 (643)
Q Consensus 288 -----~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~---------------------~~~~~~~--~~~- 338 (643)
+...+..++.++. .-.|+|||||...... ++..|+ .+..... ...
T Consensus 567 ~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred chhhhHHHHHHHHHhhcC--ccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 2355666676553 4569999999643322 122222 1111000 000
Q ss_pred CCC-----ceEEEEEEe--chh-----hh---hH-------H----HHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhh
Q 006500 339 PST-----LTEEVVRIR--RMR-----EV---NQ-------E----AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL 392 (643)
Q Consensus 339 ~~~-----~~~~~~~~~--~~~-----~~---~~-------~----~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~ 392 (643)
... +......+. ... .. .+ . ..+...+....++++||||.+...|+.+...|..
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 000 000000000 000 00 00 0 0011112222347999999999999998888764
Q ss_pred c------CC---ceEEccCCCCHHHHHHHHHHhhcCCc-eEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcc
Q 006500 393 A------AL---KAAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462 (643)
Q Consensus 393 ~------~~---~~~~lh~~~~~~~R~~~l~~F~~g~~-~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRag 462 (643)
. ++ .+..+||+++ ++..+++.|+++.. .|||+++++.+|+|+|.|.+||++.++.|...|+|++||+.
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhc
Confidence 2 22 4567899875 46789999999887 69999999999999999999999999999999999999999
Q ss_pred cCC
Q 006500 463 RAG 465 (643)
Q Consensus 463 R~g 465 (643)
|..
T Consensus 799 R~~ 801 (1123)
T PRK11448 799 RLC 801 (1123)
T ss_pred cCC
Confidence 953
No 108
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=9.5e-26 Score=248.61 Aligned_cols=338 Identities=19% Similarity=0.230 Sum_probs=244.4
Q ss_pred CCCCCCCHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhHHhHHHHHhcCCC-----CCCCeEEEEEcCcHHHHHHHHHHH
Q 006500 143 LGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPK-----RIPAIRVLILTPTRELAVQVHSMI 216 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-----~~~~~~vLil~Ptr~La~Q~~~~~ 216 (643)
.|...+.++|....+.++.+ .++++|||||+|||-.+++-+|+.+-.+.. ...+.++++++|..+|+..|...|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 46777999999999999987 589999999999999999999999876543 123558999999999999999988
Q ss_pred HHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCcc-CCCCeeEEEEeCCchhccCChHHHHHHH
Q 006500 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLELGFSAEIHEL 295 (643)
Q Consensus 217 ~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~-~l~~i~~lVvDEah~l~~~g~~~~~~~i 295 (643)
.+.....+++|.-.+|......+. ...+.|+|+||+..--.-++.... ..+-++++|+||.|.+-+. ..+.+..|
T Consensus 385 SkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpvLESI 460 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLESI 460 (1674)
T ss_pred HhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccc-cchHHHHH
Confidence 888888899999999986644332 235789999999873333332222 1335789999999976432 33333333
Q ss_pred H----H---HCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHH-----HHHH
Q 006500 296 V----R---LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA-----VLLS 363 (643)
Q Consensus 296 ~----~---~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~ 363 (643)
. . .-.....++++|||+|+... ........+.-+.......+|..+.|.++-+.......+.. ....
T Consensus 461 VaRt~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeK 539 (1674)
T KOG0951|consen 461 VARTFRRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEK 539 (1674)
T ss_pred HHHHHHHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHH
Confidence 2 1 22346789999999986533 22222223333333345568889999988876544433322 2333
Q ss_pred HhhccCCceEEEEeCCHHHHHHHHHHHhh-------------------------------------cCCceEEccCCCCH
Q 006500 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGL-------------------------------------AALKAAELHGNLTQ 406 (643)
Q Consensus 364 ~~~~~~~~~~LIF~~s~~~~~~l~~~L~~-------------------------------------~~~~~~~lh~~~~~ 406 (643)
.+.....++||||+-+++..-..++.++. +.+.++.+|++|+.
T Consensus 540 Vm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R 619 (1674)
T KOG0951|consen 540 VLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNR 619 (1674)
T ss_pred HHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCc
Confidence 44445558999999998876665555431 13568899999999
Q ss_pred HHHHHHHHHhhcCCceEEEecccccccCCCCCccEEE----ecCCCC------ChhHHHHHHhhcccCC--CccEEEEEe
Q 006500 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----NYACPR------DLTSYVHRVGRTARAG--REGYAVTFV 474 (643)
Q Consensus 407 ~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI----~~d~p~------s~~~y~Qr~GRagR~g--~~g~~~~l~ 474 (643)
.+|..+.+.|..|.++|||+|-.+++|+|+|+-.++| -|++.. +|...+||.|||||.+ +.|..++.-
T Consensus 620 ~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit 699 (1674)
T KOG0951|consen 620 KDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIIT 699 (1674)
T ss_pred chHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeecc
Confidence 9999999999999999999999999999999877777 466543 7999999999999966 446666665
Q ss_pred ccCcHHHHHHH
Q 006500 475 TDNDRSLLKAI 485 (643)
Q Consensus 475 ~~~d~~~l~~i 485 (643)
...+..+...+
T Consensus 700 ~~se~qyyls~ 710 (1674)
T KOG0951|consen 700 DHSELQYYLSL 710 (1674)
T ss_pred CchHhhhhHHh
Confidence 55555444443
No 109
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=2e-26 Score=242.61 Aligned_cols=320 Identities=20% Similarity=0.243 Sum_probs=238.0
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 006500 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (643)
.+.|+|..+|..+-++.++++.|.|.+|||.++-.++...+... -||++..|-++|.+|-|+.+..-++ .
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k------QRVIYTSPIKALSNQKYREl~~EF~----D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK------QRVIYTSPIKALSNQKYRELLEEFK----D 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc------CeEEeeChhhhhcchhHHHHHHHhc----c
Confidence 48999999999999999999999999999998777777666432 3699999999999999999887443 3
Q ss_pred EEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeE
Q 006500 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (643)
Q Consensus 227 v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i 306 (643)
|++.+|+.+ +...+..+|+|.+.|...|.++ ..-+..+.+||+||.|.|-+....-.+.+-+-.+|.+.+.+
T Consensus 199 VGLMTGDVT-------InP~ASCLVMTTEILRsMLYRG-SEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 199 VGLMTGDVT-------INPDASCLVMTTEILRSMLYRG-SEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred cceeeccee-------eCCCCceeeeHHHHHHHHHhcc-chHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 466777654 3456789999999999999886 44578899999999999998777777777778899999999
Q ss_pred EEeeccchhH--HHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEec------------hhhhhHHH-------------
Q 006500 307 LFSATLTEDV--DELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR------------MREVNQEA------------- 359 (643)
Q Consensus 307 ~~SAT~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~------------- 359 (643)
++|||+|+.. .+++...-..|..+.. ...+|+.+.|++..... ..+..-..
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVY--TdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVY--TDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEe--ecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 9999999654 3344444455654443 44577777776433111 00000000
Q ss_pred ------------------------HHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcC---------------------
Q 006500 360 ------------------------VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA--------------------- 394 (643)
Q Consensus 360 ------------------------~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~--------------------- 394 (643)
.+...+-.....++|||+-|++.|+.++-.|..+.
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 11111111223479999999999999977774432
Q ss_pred ------------------CceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEe----cCCC---C
Q 006500 395 ------------------LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YACP---R 449 (643)
Q Consensus 395 ------------------~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~----~d~p---~ 449 (643)
-.++.+||++-+--..-+.-.|..|-+++|+||..++.|||.|.-++|+- ||-. |
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRw 508 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRW 508 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceee
Confidence 23678999999988888888999999999999999999999987766652 2211 1
Q ss_pred -ChhHHHHHHhhcccCC--CccEEEEEeccC-cHHHHHHHH
Q 006500 450 -DLTSYVHRVGRTARAG--REGYAVTFVTDN-DRSLLKAIA 486 (643)
Q Consensus 450 -s~~~y~Qr~GRagR~g--~~g~~~~l~~~~-d~~~l~~i~ 486 (643)
+.-.|+|+.|||||.| ..|.||++++.. +....+.+.
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~ 549 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDML 549 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHh
Confidence 5668999999999988 469999998764 444444443
No 110
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=234.42 Aligned_cols=310 Identities=18% Similarity=0.191 Sum_probs=211.3
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh-hcCC
Q 006500 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA-QFTD 224 (643)
Q Consensus 146 ~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~-~~~~ 224 (643)
-...++-.+.+.++-.++-+||.|.||||||++....+.+..+.. .+.++-+..|+|..|..++..+.+-. ...|
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk----~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTK----GGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccccc----CCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 345677788888888899999999999999996444444443322 23459999999999988876555432 2223
Q ss_pred ceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchh-ccCCh-HHHHHHHHHHCCCC
Q 006500 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELGF-SAEIHELVRLCPKR 302 (643)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l-~~~g~-~~~~~~i~~~~~~~ 302 (643)
..|++-.. ++.......-|-++|.|.|+..+.. ..+|.++++|||||||.- +.... ...+..|.+ +.+.
T Consensus 340 ~eVGYsIR------FEdcTSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL~TDILfgLvKDIar-~Rpd 410 (902)
T KOG0923|consen 340 HEVGYSIR------FEDCTSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTLHTDILFGLVKDIAR-FRPD 410 (902)
T ss_pred cccceEEE------eccccCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhhhhhHHHHHHHHHHh-hCCc
Confidence 22322221 1222334567889999999998877 567899999999999963 33221 122233333 3467
Q ss_pred ceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHH---HHHHhhccCCceEEEEeCC
Q 006500 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV---LLSLCSKTFTSKVIIFSGT 379 (643)
Q Consensus 303 ~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~LIF~~s 379 (643)
.++++.|||+.. ..+...+-..|+.. + +....|..+ +... ......-.+. ++.++...+.+-+|||...
T Consensus 411 LKllIsSAT~DA--ekFS~fFDdapIF~-i-PGRRyPVdi---~Yt~-~PEAdYldAai~tVlqIH~tqp~GDILVFltG 482 (902)
T KOG0923|consen 411 LKLLISSATMDA--EKFSAFFDDAPIFR-I-PGRRYPVDI---FYTK-APEADYLDAAIVTVLQIHLTQPLGDILVFLTG 482 (902)
T ss_pred ceEEeeccccCH--HHHHHhccCCcEEe-c-cCcccceee---eccc-CCchhHHHHHHhhheeeEeccCCccEEEEecc
Confidence 899999999964 33333333334332 2 222222211 1111 1111222222 3334456667899999999
Q ss_pred HHHHHHHHHHHhhc---------CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCC---
Q 006500 380 KQAAHRLKILFGLA---------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC--- 447 (643)
Q Consensus 380 ~~~~~~l~~~L~~~---------~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~--- 447 (643)
.+.++.....|... .+-+++||+++++..+..+++.-..|-.+|++||++|.++|.|++|.+||.-+.
T Consensus 483 QeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~ 562 (902)
T KOG0923|consen 483 QEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQ 562 (902)
T ss_pred HHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccc
Confidence 99888776666432 356889999999999999999999999999999999999999999999995332
Q ss_pred ---------------CCChhHHHHHHhhcccCCCccEEEEEeccC
Q 006500 448 ---------------PRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (643)
Q Consensus 448 ---------------p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~ 477 (643)
|-|-.+-.||.|||||.| +|+|+.|++.+
T Consensus 563 nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 563 NSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred cCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 235667789999999988 99999999854
No 111
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.94 E-value=2.3e-24 Score=241.79 Aligned_cols=180 Identities=21% Similarity=0.296 Sum_probs=144.5
Q ss_pred CCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCC-
Q 006500 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC- 447 (643)
Q Consensus 369 ~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~- 447 (643)
.+.++||||+|+..+++|..+|...|+++..+||++++.+|..++..|+.|.+.|||||+++++|+|+|++++||+++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----CCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHhcC-------cccccchhhhhHHHHHHHHHHHHHH
Q 006500 448 ----PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS-------KLKSRIVAEQSITKWSKIIEQMEDQ 516 (643)
Q Consensus 448 ----p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (643)
|.++.+|+||+|||||. ..|.|++|++..+..+.+.+.+.... ..+...++...+..|...++.+.+.
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIKKKIRDILDSVYKK 603 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHhhhhh
Confidence 78999999999999995 79999999997766666655443321 2233456666666666666544332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 006500 517 VAAILQEEREERILRKAEMEATKAENMIAHKEEIF 551 (643)
Q Consensus 517 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 551 (643)
..+.++.....+...+.+|.++.+.+.|+++..
T Consensus 604 --~~~~~~~~~~~~~~l~~~M~~aa~~l~fE~Aa~ 636 (652)
T PRK05298 604 --DKLSKKELEKLIKELEKQMKEAAKNLEFEEAAR 636 (652)
T ss_pred --ccCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 234445566677777777777777777765544
No 112
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=6.7e-25 Score=206.53 Aligned_cols=165 Identities=38% Similarity=0.559 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEE
Q 006500 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (643)
Q Consensus 149 ~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~ 228 (643)
||+|.++++.+..|+++++.||||+|||++|++++++.+... . ..++||++|+++|+.|+.+.+..++...++++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~---~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-K---DARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-S---SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-C---CceEEEEeecccccccccccccccccccccccc
Confidence 789999999999999999999999999999999999988765 2 237999999999999999999999888788999
Q ss_pred EEecCCChH-HHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCC--CCcee
Q 006500 229 LVVGGLSTK-MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP--KRRQT 305 (643)
Q Consensus 229 ~~~g~~~~~-~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~--~~~q~ 305 (643)
.++|+.... .....+...++|+|+||++|...+..... .+.++++||+||+|.+..+++...+..++..+. .+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 77 LLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred cccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 999988755 44445556799999999999999987433 667799999999999999889998999888873 35899
Q ss_pred EEEeeccchhHHH
Q 006500 306 MLFSATLTEDVDE 318 (643)
Q Consensus 306 i~~SAT~~~~~~~ 318 (643)
+++|||++..+..
T Consensus 156 i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 156 ILLSATLPSNVEK 168 (169)
T ss_dssp EEEESSSTHHHHH
T ss_pred EEEeeCCChhHhh
Confidence 9999999966654
No 113
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=221.87 Aligned_cols=344 Identities=21% Similarity=0.223 Sum_probs=248.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCCeEEE-cCCCchh--HHHhHHhHHHHHhcCC-------------------------CCCC
Q 006500 144 GYSKPTPIQAACIPLALTGRDICGS-AITGSGK--TAAFALPTLERLLYRP-------------------------KRIP 195 (643)
Q Consensus 144 g~~~~~~~Q~~~i~~~l~g~d~l~~-a~TGsGK--T~~~~l~~l~~l~~~~-------------------------~~~~ 195 (643)
.-..+|+.|.+.+..+.+++|++.- ...+.|+ +-.|++++|+++++.+ .+.+
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3457899999999999999999853 3334455 5678999999988532 2367
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCc---------eEEEEec---------------------CCChHHHHHHh--
Q 006500 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDI---------RCCLVVG---------------------GLSTKMQETAL-- 243 (643)
Q Consensus 196 ~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~---------~v~~~~g---------------------~~~~~~~~~~l-- 243 (643)
+|+||||||+|+.|..+.+.+..+....+- ++.--++ |...+.+...+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 899999999999999999999887432111 1111111 11111111111
Q ss_pred ----------cCCCcEEEECchhHHHHHhccCc----c-CCCCeeEEEEeCCchhc--cCChHHHHHHHHHHCCCC----
Q 006500 244 ----------RSMPDIVVATPGRMIDHLRNSMS----V-DLDDLAVLILDEADRLL--ELGFSAEIHELVRLCPKR---- 302 (643)
Q Consensus 244 ----------~~~~~Ivv~Tp~~L~~~l~~~~~----~-~l~~i~~lVvDEah~l~--~~g~~~~~~~i~~~~~~~---- 302 (643)
...+||+||+|..|..++.+... + .|++|.++|||.||.++ +|.+...+...++.+|..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCC
Confidence 23489999999999999974322 2 38999999999999988 677777888888888753
Q ss_pred -----------------ceeEEEeeccchhHHHHHHHhcCCC---eEEecCC----CCCCCCCceEEEEEEechhhhhHH
Q 006500 303 -----------------RQTMLFSATLTEDVDELIKLSLTKP---LRLSADP----SAKRPSTLTEEVVRIRRMREVNQE 358 (643)
Q Consensus 303 -----------------~q~i~~SAT~~~~~~~~~~~~~~~p---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 358 (643)
+|+++||+--.+.+..+....|.+- +...... .......+.|.+.++.........
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 5999999999999988888777652 1111111 111223345555554332222222
Q ss_pred HHHHHHh--------hccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccc
Q 006500 359 AVLLSLC--------SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (643)
Q Consensus 359 ~~l~~~~--------~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~ 430 (643)
+....++ .......+|||+|++-...+++++|....+++..+|.+.++..-.++...|-.|...||+.|..+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 2222211 12224578999999999999999999999999999999999999999999999999999999998
Q ss_pred c--ccCCCCCccEEEecCCCCChhHHHH---HHhhcccCC----CccEEEEEeccCcHHHHHHHHH
Q 006500 431 A--RGLDIIGVQTVINYACPRDLTSYVH---RVGRTARAG----REGYAVTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 431 ~--~GlDi~~v~~VI~~d~p~s~~~y~Q---r~GRagR~g----~~g~~~~l~~~~d~~~l~~i~~ 487 (643)
. +..+|.||+.||+|.+|.+|..|.. +++|+.--| ..-.|.+++++.|.-.|..|.-
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 5 8999999999999999999998864 455543222 3357999999999877776653
No 114
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.93 E-value=3.3e-24 Score=223.37 Aligned_cols=298 Identities=19% Similarity=0.225 Sum_probs=229.8
Q ss_pred CCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC-Cc----eEEEEec---------------CCChHHHHHHh------
Q 006500 190 RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DI----RCCLVVG---------------GLSTKMQETAL------ 243 (643)
Q Consensus 190 ~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~-~~----~v~~~~g---------------~~~~~~~~~~l------ 243 (643)
++.+.++|+||||+|+|..|.++.+.+..++... .+ ++..-+| ...+......+
T Consensus 31 RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD 110 (442)
T PF06862_consen 31 RDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDD 110 (442)
T ss_pred hccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccc
Confidence 4567889999999999999999999988876541 10 0000011 11111111111
Q ss_pred ------------------cCCCcEEEECchhHHHHHhcc----Cc-cCCCCeeEEEEeCCchhc--cCChHHHHHHHHHH
Q 006500 244 ------------------RSMPDIVVATPGRMIDHLRNS----MS-VDLDDLAVLILDEADRLL--ELGFSAEIHELVRL 298 (643)
Q Consensus 244 ------------------~~~~~Ivv~Tp~~L~~~l~~~----~~-~~l~~i~~lVvDEah~l~--~~g~~~~~~~i~~~ 298 (643)
...+|||||+|-.|...+... .. -.|++|+++|||.||.|+ ||.|...+...++.
T Consensus 111 ~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~ 190 (442)
T PF06862_consen 111 CFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNL 190 (442)
T ss_pred eEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhcc
Confidence 134899999999999988742 12 248999999999999887 89999999999998
Q ss_pred CCCC---------------------ceeEEEeeccchhHHHHHHHhcCCC---eEEecCCC-----CCCCCCceEEEEEE
Q 006500 299 CPKR---------------------RQTMLFSATLTEDVDELIKLSLTKP---LRLSADPS-----AKRPSTLTEEVVRI 349 (643)
Q Consensus 299 ~~~~---------------------~q~i~~SAT~~~~~~~~~~~~~~~p---~~~~~~~~-----~~~~~~~~~~~~~~ 349 (643)
.|+. +|+|++|+..++++..+....|.+. +.+..... ......+.|.+.++
T Consensus 191 ~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~ 270 (442)
T PF06862_consen 191 QPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRF 270 (442)
T ss_pred CCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEe
Confidence 8853 6999999999999999998877653 22222111 23456788889888
Q ss_pred echhhhhHHHHHHHH--------hh-ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCC
Q 006500 350 RRMREVNQEAVLLSL--------CS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (643)
Q Consensus 350 ~~~~~~~~~~~l~~~--------~~-~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~ 420 (643)
.........+....+ +. ....+++|||++|+-+..+|+++|...++.++.+|.++++.+-.++...|..|+
T Consensus 271 ~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~ 350 (442)
T PF06862_consen 271 DCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR 350 (442)
T ss_pred cCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC
Confidence 765544443332221 22 445679999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccccc--ccCCCCCccEEEecCCCCChhHHHHHHhhcccCC------CccEEEEEeccCcHHHHHHHHH
Q 006500 421 VDFLIATDVAA--RGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG------REGYAVTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 421 ~~vLvaT~~~~--~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g------~~g~~~~l~~~~d~~~l~~i~~ 487 (643)
.+|||.|..+. +...|.||++||.|.+|.+|..|...+.-.+... ..+.|.+|++..|...|+.|.-
T Consensus 351 ~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 351 KPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred ceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 99999999985 8899999999999999999999998887655533 2579999999999998888764
No 115
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.4e-24 Score=226.46 Aligned_cols=309 Identities=18% Similarity=0.171 Sum_probs=208.4
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh-cCCc
Q 006500 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDI 225 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~-~~~~ 225 (643)
.....+.+.+..+-.++-+|+.|.||||||++....+++..+.. .+.+.+..|.|..|..++..+..-.. ..|-
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~-----~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD-----NGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc-----CCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 44566777777787888899999999999997544444443322 34689999999999988776665432 1233
Q ss_pred eEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchh-ccCChHHHHHHHHHHCCCCce
Q 006500 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELGFSAEIHELVRLCPKRRQ 304 (643)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l-~~~g~~~~~~~i~~~~~~~~q 304 (643)
.|++.+.. ...-.....|-++|.|.|+..... .-.|..+++||+||||.- +|....--+.+..-.-..+.+
T Consensus 431 ~VGYsIRF------EdvT~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlK 502 (1042)
T KOG0924|consen 431 TVGYSIRF------EDVTSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLK 502 (1042)
T ss_pred ccceEEEe------eecCCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccce
Confidence 33332221 111223467899999999876544 456889999999999964 354433333333334456789
Q ss_pred eEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHH---HhhccCCceEEEEeCCHH
Q 006500 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS---LCSKTFTSKVIIFSGTKQ 381 (643)
Q Consensus 305 ~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~LIF~~s~~ 381 (643)
+|+.||||.. ..+...|-+.|.. .+ +....|..+ ..........-...+.. +......+-+|||.+..+
T Consensus 503 liVtSATm~a--~kf~nfFgn~p~f-~I-pGRTyPV~~----~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqe 574 (1042)
T KOG0924|consen 503 LIVTSATMDA--QKFSNFFGNCPQF-TI-PGRTYPVEI----MYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQE 574 (1042)
T ss_pred EEEeeccccH--HHHHHHhCCCcee-ee-cCCccceEE----EeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCc
Confidence 9999999963 3444433334432 22 111122111 11111112222222222 333455678999999887
Q ss_pred HHHHHHHH----Hhh------cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCC----
Q 006500 382 AAHRLKIL----FGL------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC---- 447 (643)
Q Consensus 382 ~~~~l~~~----L~~------~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~---- 447 (643)
.++-.... |.+ .++.++.|++.|++.-+.++++.-..|..+|+|||++|++.|.||++.+||..+.
T Consensus 575 diE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 575 DIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred chhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 66544433 332 2678999999999999999999999999999999999999999999999996442
Q ss_pred --------------CCChhHHHHHHhhcccCCCccEEEEEeccC
Q 006500 448 --------------PRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (643)
Q Consensus 448 --------------p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~ 477 (643)
|-|-..--||.|||||.| +|.||.+|+..
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 335666779999999987 99999999874
No 116
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=3.6e-23 Score=226.12 Aligned_cols=280 Identities=25% Similarity=0.302 Sum_probs=194.1
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
.|| .|+..|.....-++.|++.-+.||||.|||+- .+.+--.+-. .+.+++||+||+.|+.|+++.+.+++..
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a~-----kgkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLAK-----KGKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHHh-----cCCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 355 79999999999999999999999999999964 3333222211 2347999999999999999999999876
Q ss_pred CC-ceEEE-EecCCChHHHHH----HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhcc-----------
Q 006500 223 TD-IRCCL-VVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----------- 285 (643)
Q Consensus 223 ~~-~~v~~-~~g~~~~~~~~~----~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~----------- 285 (643)
.+ ..+.+ +++..+...... .-.++.||+|+|...|...+..... -++++++||.+|.++-
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~LkaskNvDriL~L 228 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAILKASKNVDRLLRL 228 (1187)
T ss_pred cCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHHHhccccHHHHHHH
Confidence 55 55544 455545444332 2346799999999988776655322 3578999999998763
Q ss_pred CChHHHH-------HHHHHH------------------------CCCCceeEEEeeccchhHH--HHHHHhcCCCeEEec
Q 006500 286 LGFSAEI-------HELVRL------------------------CPKRRQTMLFSATLTEDVD--ELIKLSLTKPLRLSA 332 (643)
Q Consensus 286 ~g~~~~~-------~~i~~~------------------------~~~~~q~i~~SAT~~~~~~--~~~~~~~~~p~~~~~ 332 (643)
.||.... ..+... -.+..++|+.|||..+.-. .+.+..+. +.+
T Consensus 229 lGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----Fev 304 (1187)
T COG1110 229 LGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEV 304 (1187)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----Ccc
Confidence 2333221 111111 1234688999999875432 22233222 111
Q ss_pred CCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhccCCceEEEEeCC---HHHHHHHHHHHhhcCCceEEccCCCCHHHH
Q 006500 333 DPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGT---KQAAHRLKILFGLAALKAAELHGNLTQAQR 409 (643)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s---~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R 409 (643)
........++.+.++.. .....+..+++.. +.+.|||++. ++.++.++.+|...|+++..+|+. .
T Consensus 305 G~~~~~LRNIvD~y~~~------~~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~ 372 (1187)
T COG1110 305 GSGGEGLRNIVDIYVES------ESLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----K 372 (1187)
T ss_pred CccchhhhheeeeeccC------ccHHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----c
Confidence 11111223344333322 2233334444443 5689999999 999999999999999999999983 2
Q ss_pred HHHHHHhhcCCceEEEec----ccccccCCCCC-ccEEEecCCC
Q 006500 410 LEALELFRKQHVDFLIAT----DVAARGLDIIG-VQTVINYACP 448 (643)
Q Consensus 410 ~~~l~~F~~g~~~vLvaT----~~~~~GlDi~~-v~~VI~~d~p 448 (643)
.+.++.|..|++++||++ .++-||||+|. ++++|+|+.|
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 678999999999999975 67789999997 8999999998
No 117
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=5.9e-24 Score=231.32 Aligned_cols=341 Identities=20% Similarity=0.249 Sum_probs=239.8
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHH--HHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 006500 132 LSRPLLRACEALGYSKPTPIQAACI--PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (643)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~~Q~~~i--~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La 209 (643)
++....-.....|...++.+|.+|+ |.++.+++.|+.+||+.|||++.-+-++..++...+ .++.+.|-...+
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr-----~~llilp~vsiv 282 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR-----NVLLILPYVSIV 282 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh-----ceeEecceeehh
Confidence 3444444556789999999999997 678889999999999999999999999988887654 389999998887
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccC-ccCCCCeeEEEEeCCchhccCCh
Q 006500 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLILDEADRLLELGF 288 (643)
Q Consensus 210 ~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~-~~~l~~i~~lVvDEah~l~~~g~ 288 (643)
..-...+..+....|+.+..++|...+... ...-++.|+|-++-..++.... .-.+..+++|||||.|.+.+.+.
T Consensus 283 ~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~r 358 (1008)
T KOG0950|consen 283 QEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGR 358 (1008)
T ss_pred HHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecccc
Confidence 777788888888889999888876554332 3446899999887544433211 22467789999999999998876
Q ss_pred HHHHHHHHHH-----CCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEE------EE--------
Q 006500 289 SAEIHELVRL-----CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV------RI-------- 349 (643)
Q Consensus 289 ~~~~~~i~~~-----~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------~~-------- 349 (643)
...++.++.. .....|+|++|||+++. .. +..++...+.. ...+|..+.+... ..
T Consensus 359 g~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~-~l-L~~~L~A~~y~----t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ 432 (1008)
T KOG0950|consen 359 GAILELLLAKILYENLETSVQIIGMSATIPNN-SL-LQDWLDAFVYT----TRFRPVPLKEYIKPGSLIYESSRNKVLRE 432 (1008)
T ss_pred chHHHHHHHHHHHhccccceeEeeeecccCCh-HH-HHHHhhhhhee----cccCcccchhccCCCcccccchhhHHHHH
Confidence 6655555432 22346899999999852 22 22222221111 1122222222110 00
Q ss_pred -e----chhhhhHHHHHHHHhhcc--CCceEEEEeCCHHHHHHHHHHHhh------------------------------
Q 006500 350 -R----RMREVNQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGL------------------------------ 392 (643)
Q Consensus 350 -~----~~~~~~~~~~l~~~~~~~--~~~~~LIF~~s~~~~~~l~~~L~~------------------------------ 392 (643)
. ........+.+..++... .+.++||||+++..|+.++..+..
T Consensus 433 ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 0 000001112222222221 234699999999999988654421
Q ss_pred --------cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEec---CCC-CChhHHHHHHhh
Q 006500 393 --------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY---ACP-RDLTSYVHRVGR 460 (643)
Q Consensus 393 --------~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~---d~p-~s~~~y~Qr~GR 460 (643)
....++++|++++..+|..+-..|++|...|++||+.++-|+++|..+++|-+ +.+ .+.-.|.||+||
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGR 592 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhh
Confidence 12457899999999999999999999999999999999999999999988843 222 366799999999
Q ss_pred cccCC--CccEEEEEeccCcHHHHHHHHH
Q 006500 461 TARAG--REGYAVTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 461 agR~g--~~g~~~~l~~~~d~~~l~~i~~ 487 (643)
|||+| ..|.+++++...+..++..+..
T Consensus 593 AGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhcccccCcceEEEeeccchhHHHHHHh
Confidence 99987 4599999999999877766654
No 118
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=9.1e-23 Score=226.81 Aligned_cols=317 Identities=17% Similarity=0.190 Sum_probs=228.8
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH-hhcCCc
Q 006500 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDI 225 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l-~~~~~~ 225 (643)
..+..+..+|..+.+++.++++|.||+|||++....+|+....+. ...++++..|+|-.|.-+++.+..- +...+-
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~---~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG---AACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC---CCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 356778888999999999999999999999998888998887665 4556999999998888888776543 222455
Q ss_pred eEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc-cCChHHHHHHHHHHCCCCce
Q 006500 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQ 304 (643)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~-~~g~~~~~~~i~~~~~~~~q 304 (643)
.|++.++..+. ......+++||.|.|++.|.. ...+..+..+|+||+|.-. +..|.-.+.+.+-...+..+
T Consensus 250 ~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 250 EVGYQVRLESK------RSRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred eeeEEEeeecc------cCCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 55555554322 223478999999999999987 5678899999999999754 56677666666666668899
Q ss_pred eEEEeeccchhHHHHHHHhcCCCeEEecCCCC-C---------------CCCCceEEE-----------EEEec--hhhh
Q 006500 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSA-K---------------RPSTLTEEV-----------VRIRR--MREV 355 (643)
Q Consensus 305 ~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~-~---------------~~~~~~~~~-----------~~~~~--~~~~ 355 (643)
+|+||||+..+ ....++.....+.+.... . ......+.. +.+.. ....
T Consensus 322 vILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 322 VILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 99999999733 233333332222211100 0 000000000 00000 0111
Q ss_pred hHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhc-------CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecc
Q 006500 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (643)
Q Consensus 356 ~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~-------~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~ 428 (643)
.-...+..++.....+.+|||.++...+..+...|... .+-+..+|+.|+..++..++.....|..+|+++|+
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 11223444555666789999999999999999988642 35678999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEe--------cCCCC----------ChhHHHHHHhhcccCCCccEEEEEeccCc
Q 006500 429 VAARGLDIIGVQTVIN--------YACPR----------DLTSYVHRVGRTARAGREGYAVTFVTDND 478 (643)
Q Consensus 429 ~~~~GlDi~~v~~VI~--------~d~p~----------s~~~y~Qr~GRagR~g~~g~~~~l~~~~d 478 (643)
+|+.+|.|++|-+||. ||+-. +-..-.||.|||||. ++|.||.+++...
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999999999995 44433 334556999999995 6999999998754
No 119
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.91 E-value=6.6e-23 Score=218.07 Aligned_cols=322 Identities=18% Similarity=0.190 Sum_probs=216.5
Q ss_pred CCHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 006500 148 PTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (643)
Q Consensus 148 ~~~~Q~~~i~~~l~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~ 223 (643)
+-+||.-.++|+.- +-++|++..+|.|||.+ .+..|..|..... ++ .-|||||...| ..|.++|.+|| +
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~--~g-pHLVVvPsSTl-eNWlrEf~kwC--P 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN--PG-PHLVVVPSSTL-ENWLREFAKWC--P 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC--CC-CcEEEecchhH-HHHHHHHHHhC--C
Confidence 78999999999753 45789999999999987 5666666654432 33 36999999888 55777888887 6
Q ss_pred CceEEEEecCCChHHHHHHh----cCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHC
Q 006500 224 DIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (643)
Q Consensus 224 ~~~v~~~~g~~~~~~~~~~l----~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~ 299 (643)
.++|..++|........+.. ....+|+++|+.-...--.....+.-.+|.++|+||+|.|-+.+ ..++..++..-
T Consensus 473 sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I~ 551 (941)
T KOG0389|consen 473 SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSIN 551 (941)
T ss_pred ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcccc
Confidence 78999999987554433222 23589999998765322111112234568899999999988764 33344444332
Q ss_pred CCCceeEEEeeccc-hhHHHHHHHh---cC-----------------------------------------CCeE-----
Q 006500 300 PKRRQTMLFSATLT-EDVDELIKLS---LT-----------------------------------------KPLR----- 329 (643)
Q Consensus 300 ~~~~q~i~~SAT~~-~~~~~~~~~~---~~-----------------------------------------~p~~----- 329 (643)
..+.|++|+|+- +++.+++.+. +. .|..
T Consensus 552 --An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K 629 (941)
T KOG0389|consen 552 --ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLK 629 (941)
T ss_pred --ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344577788763 2232221110 00 0000
Q ss_pred -------------Ee-------------------------cCCCCCCCC--Cce-------EEE-----EE---------
Q 006500 330 -------------LS-------------------------ADPSAKRPS--TLT-------EEV-----VR--------- 348 (643)
Q Consensus 330 -------------~~-------------------------~~~~~~~~~--~~~-------~~~-----~~--------- 348 (643)
+. ......... .+. |.+ +.
T Consensus 630 ~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak 709 (941)
T KOG0389|consen 630 SQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAK 709 (941)
T ss_pred HHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHH
Confidence 00 000000000 000 000 00
Q ss_pred ----Ee----------------------------------------chhhhhHHHHHHHHhh--ccCCceEEEEeCCHHH
Q 006500 349 ----IR----------------------------------------RMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQA 382 (643)
Q Consensus 349 ----~~----------------------------------------~~~~~~~~~~l~~~~~--~~~~~~~LIF~~s~~~ 382 (643)
.. ......+...|..++. ...+++||||.+...+
T Consensus 710 ~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqm 789 (941)
T KOG0389|consen 710 RILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQM 789 (941)
T ss_pred HHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHH
Confidence 00 0000111112222222 2336899999999999
Q ss_pred HHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCC--ceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhh
Q 006500 383 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH--VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGR 460 (643)
Q Consensus 383 ~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~--~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR 460 (643)
.+.|..+|...++.+..|+|.+...+|..++..|...+ +-+|++|.+++-|||+..+++||.||+..||-...|.-.|
T Consensus 790 LDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDR 869 (941)
T KOG0389|consen 790 LDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDR 869 (941)
T ss_pred HHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHH
Confidence 99999999999999999999999999999999999765 3479999999999999999999999999999999999999
Q ss_pred cccCCCc--cEEEEEeccCcH
Q 006500 461 TARAGRE--GYAVTFVTDNDR 479 (643)
Q Consensus 461 agR~g~~--g~~~~l~~~~d~ 479 (643)
++|.|+. -.++.|+++++.
T Consensus 870 cHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHhhCCcceeEEEEEEecCcH
Confidence 9999964 677888888874
No 120
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.90 E-value=6.5e-23 Score=226.14 Aligned_cols=323 Identities=18% Similarity=0.200 Sum_probs=211.9
Q ss_pred CCCHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhHHhHHHHHhcCCC---CCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006500 147 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLILTPTRELAVQVHSMIEKI 219 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~~~vLil~Ptr~La~Q~~~~~~~l 219 (643)
.++.||++.+.|+.- +-+.|+|..+|.|||++.+..+....+.+.. ...+...||+||. .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 357899999998642 3489999999999999854433333333311 2234448999997 8888899999999
Q ss_pred hhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHC
Q 006500 220 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (643)
Q Consensus 220 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~ 299 (643)
+.+ +++..++|+...+...+.-.++++|+|++|+.+.+-+.. +.-..|.|+|+||.|.|-|. ...+....+.+
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL 1126 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHHH
Confidence 876 777777887665555444456689999999998754432 11235889999999998873 34444444444
Q ss_pred CCCceeEEEeeccc-hhHHHHHHHh---cC--------------CCeE--------------------------------
Q 006500 300 PKRRQTMLFSATLT-EDVDELIKLS---LT--------------KPLR-------------------------------- 329 (643)
Q Consensus 300 ~~~~q~i~~SAT~~-~~~~~~~~~~---~~--------------~p~~-------------------------------- 329 (643)
.... .+++|+|+- +++.++..+| |. +|+.
T Consensus 1127 ~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1127 RANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred hhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333 366777763 2333331111 00 0000
Q ss_pred ------------------------------------------EecCCCCCCCCC-c--------------eEE-EEEEe-
Q 006500 330 ------------------------------------------LSADPSAKRPST-L--------------TEE-VVRIR- 350 (643)
Q Consensus 330 ------------------------------------------~~~~~~~~~~~~-~--------------~~~-~~~~~- 350 (643)
-..+........ - .|. ++..+
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 000000000000 0 000 00000
Q ss_pred -------------------chhhhhHHHHHHHHhh---c-------------cCCceEEEEeCCHHHHHHHHHHHhhc--
Q 006500 351 -------------------RMREVNQEAVLLSLCS---K-------------TFTSKVIIFSGTKQAAHRLKILFGLA-- 393 (643)
Q Consensus 351 -------------------~~~~~~~~~~l~~~~~---~-------------~~~~~~LIF~~s~~~~~~l~~~L~~~-- 393 (643)
......+...|..++. - ..++++||||+-+.+++.+.+-|-..
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 0001111122222221 1 13579999999999999998877554
Q ss_pred -CCceEEccCCCCHHHHHHHHHHhhcC-CceEE-EecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccE-
Q 006500 394 -ALKAAELHGNLTQAQRLEALELFRKQ-HVDFL-IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY- 469 (643)
Q Consensus 394 -~~~~~~lh~~~~~~~R~~~l~~F~~g-~~~vL-vaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~- 469 (643)
.+.+..|+|..++.+|.++.++|+++ .++|| ++|-+++.|+|+.|+++||+++-.|||...+|.+.||+|.|++-.
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 34566899999999999999999998 67765 588999999999999999999999999999999999999997754
Q ss_pred -EEEEeccCc
Q 006500 470 -AVTFVTDND 478 (643)
Q Consensus 470 -~~~l~~~~d 478 (643)
+|.|++.+.
T Consensus 1446 NVyRlItrGT 1455 (1549)
T KOG0392|consen 1446 NVYRLITRGT 1455 (1549)
T ss_pred eeeeehhccc
Confidence 555566655
No 121
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.4e-21 Score=215.39 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=109.7
Q ss_pred hHHHHHHHHhhc--cCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEeccccccc
Q 006500 356 NQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (643)
Q Consensus 356 ~~~~~l~~~~~~--~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (643)
.+...+...+.. ..+.++||||+|+..++.|+.+|...|+++..||+ .+.+|...+..|..+...|+|||++|+||
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 455555555532 35779999999999999999999999999999997 78899999999999999999999999999
Q ss_pred CCCC---Ccc-----EEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHH
Q 006500 434 LDII---GVQ-----TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (643)
Q Consensus 434 lDi~---~v~-----~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~ 481 (643)
+||+ +|. +||+++.|.|...|.|++|||||.|.+|.+++|++..|.-+
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 9999 564 45999999999999999999999999999999999987543
No 122
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=2.5e-23 Score=226.23 Aligned_cols=330 Identities=16% Similarity=0.177 Sum_probs=220.2
Q ss_pred CCCCCCCHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006500 143 LGYSKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 218 (643)
+.-..+.+||...+.|+.+ +-+.|++..||.|||.+ .+.++..++..... .+| .||++|+..|.. |..+|..
T Consensus 390 l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~-~GP-~LvivPlstL~N-W~~Ef~k 465 (1157)
T KOG0386|consen 390 LQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQM-QGP-FLIIVPLSTLVN-WSSEFPK 465 (1157)
T ss_pred hcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHccc-CCC-eEEeccccccCC-chhhccc
Confidence 3344799999999999876 34889999999999988 67777777765442 333 899999999966 6777777
Q ss_pred HhhcCCceEEEEecCCChHH--HHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHH
Q 006500 219 IAQFTDIRCCLVVGGLSTKM--QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296 (643)
Q Consensus 219 l~~~~~~~v~~~~g~~~~~~--~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~ 296 (643)
|+ +.+....+.|...... +.....+.++|+++|++.++. ....+.--+|.++||||.|+|.+ +...+...+
T Consensus 466 Wa--PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKN--a~~KLt~~L 538 (1157)
T KOG0386|consen 466 WA--PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKN--AICKLTDTL 538 (1157)
T ss_pred cc--cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccc--hhhHHHHHh
Confidence 75 4565555555432211 122334679999999998865 22223334688999999999876 222232222
Q ss_pred HHCCCCceeEEEeeccch----hHHHH-----------------------------------------------------
Q 006500 297 RLCPKRRQTMLFSATLTE----DVDEL----------------------------------------------------- 319 (643)
Q Consensus 297 ~~~~~~~q~i~~SAT~~~----~~~~~----------------------------------------------------- 319 (643)
+........+++|+|+-. ++..+
T Consensus 539 ~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlL 618 (1157)
T KOG0386|consen 539 NTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLL 618 (1157)
T ss_pred hccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHH
Confidence 221122222334444320 00000
Q ss_pred ------------------------------------------------------------HHHhcCCCeEEecCCCCCCC
Q 006500 320 ------------------------------------------------------------IKLSLTKPLRLSADPSAKRP 339 (643)
Q Consensus 320 ------------------------------------------------------------~~~~~~~p~~~~~~~~~~~~ 339 (643)
.+..|+.|..+.-...
T Consensus 619 RRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~---- 694 (1157)
T KOG0386|consen 619 RRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN---- 694 (1157)
T ss_pred HhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcc----
Confidence 0111111111000000
Q ss_pred CCceEEEEEEechhhhhHHHHHHHHhh--ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhh
Q 006500 340 STLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417 (643)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~ 417 (643)
.+...+-...-.+...+..+|..++. +..+++||.||........+..||...++.+..++|.+...+|...+..|+
T Consensus 695 -~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN 773 (1157)
T KOG0386|consen 695 -SYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFN 773 (1157)
T ss_pred -ccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhc
Confidence 00000000011122334444444443 345799999999999999999999999999999999999999999999999
Q ss_pred cCC---ceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHH
Q 006500 418 KQH---VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (643)
Q Consensus 418 ~g~---~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~ 488 (643)
... +.+|++|.+++.|+|+..+++||+||..|||..+.|+..||+|+|+...|.++....-.++.+.|...
T Consensus 774 ~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 774 APDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred CCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 753 45899999999999999999999999999999999999999999998888777766655555555444
No 123
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=212.42 Aligned_cols=112 Identities=21% Similarity=0.335 Sum_probs=101.6
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCC--ceEEEecccccccCCCCCccEEEe
Q 006500 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH--VDFLIATDVAARGLDIIGVQTVIN 444 (643)
Q Consensus 367 ~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~--~~vLvaT~~~~~GlDi~~v~~VI~ 444 (643)
+..++++|||++...+.+.|..+|+..|+-+..|+|.+..++|...+++|+... +.+|++|...+.|||+.++++||+
T Consensus 1273 k~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF 1352 (1958)
T KOG0391|consen 1273 KSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF 1352 (1958)
T ss_pred HhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE
Confidence 345889999999999999999999999999999999999999999999999874 568999999999999999999999
Q ss_pred cCCCCChhHHHHHHhhcccCCCcc--EEEEEeccCc
Q 006500 445 YACPRDLTSYVHRVGRTARAGREG--YAVTFVTDND 478 (643)
Q Consensus 445 ~d~p~s~~~y~Qr~GRagR~g~~g--~~~~l~~~~d 478 (643)
||..||+.-..|...|++|+|+.- +.|.|++...
T Consensus 1353 YDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1353 YDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 999999999999999999999764 4555666654
No 124
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.89 E-value=2.7e-21 Score=211.69 Aligned_cols=320 Identities=17% Similarity=0.161 Sum_probs=209.7
Q ss_pred CCCHHHHHHHHHHhc---C-------CCeEEEcCCCchhHHHhHHhHHHHHhcCCCC--CCCeEEEEEcCcHHHHHHHHH
Q 006500 147 KPTPIQAACIPLALT---G-------RDICGSAITGSGKTAAFALPTLERLLYRPKR--IPAIRVLILTPTRELAVQVHS 214 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~---g-------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~vLil~Ptr~La~Q~~~ 214 (643)
.++|+|.+++..+.. | ..+|++..+|+|||+. +++.+..+++.... ..-.+.|||+|. .|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 589999999987654 2 3577899999999998 67777777664321 111468999997 77799999
Q ss_pred HHHHHhhcCCceEEEEecCCCh--HHHHH-----HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC
Q 006500 215 MIEKIAQFTDIRCCLVVGGLST--KMQET-----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287 (643)
Q Consensus 215 ~~~~l~~~~~~~v~~~~g~~~~--~~~~~-----~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g 287 (643)
+|.+|.....+....++|..+. ..... ......-|++.+++.+.+++.. +.+..+++||+||+|++-|.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccch-
Confidence 9999976556777777887664 11111 1122346788899998776654 44667899999999998764
Q ss_pred hHHHHHHHHHHCCCCceeEEEeeccc-hhHHHHH----------------------------------------------
Q 006500 288 FSAEIHELVRLCPKRRQTMLFSATLT-EDVDELI---------------------------------------------- 320 (643)
Q Consensus 288 ~~~~~~~i~~~~~~~~q~i~~SAT~~-~~~~~~~---------------------------------------------- 320 (643)
...+...+..+.. ++.|++|+|+- +++.+..
T Consensus 392 -~s~~~kaL~~l~t-~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 -DSLTLKALSSLKT-PRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hhHHHHHHHhcCC-CceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 2233333333332 33467777763 1222211
Q ss_pred -----HHhcCCCeEEecCCCCCCCCCceEEEEEEe---------------------------------------------
Q 006500 321 -----KLSLTKPLRLSADPSAKRPSTLTEEVVRIR--------------------------------------------- 350 (643)
Q Consensus 321 -----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 350 (643)
..++.... ........+.....++.+.
T Consensus 470 L~~~t~~fi~rrt---~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~ 546 (776)
T KOG0390|consen 470 LRELTNKFILRRT---GDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLC 546 (776)
T ss_pred HHHHHHhheeecc---cchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccc
Confidence 11100000 0000000011111111111
Q ss_pred --------------------------chhhhhHHHHHHHHh---hccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEcc
Q 006500 351 --------------------------RMREVNQEAVLLSLC---SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401 (643)
Q Consensus 351 --------------------------~~~~~~~~~~l~~~~---~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh 401 (643)
......+...|..++ .......+.+..|.+...+.+...++..|+.++.||
T Consensus 547 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLd 626 (776)
T KOG0390|consen 547 EKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLD 626 (776)
T ss_pred ccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEc
Confidence 001112222333333 122223455556777788888888888899999999
Q ss_pred CCCCHHHHHHHHHHhhcCC---ceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEE--ecc
Q 006500 402 GNLTQAQRLEALELFRKQH---VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF--VTD 476 (643)
Q Consensus 402 ~~~~~~~R~~~l~~F~~g~---~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l--~~~ 476 (643)
|.|+..+|..+++.|++.. .-+|++|-+++.||++-|++.||.||++|||+.-.|+++|+.|.||+-.|++| ++.
T Consensus 627 G~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 627 GKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred CCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecC
Confidence 9999999999999999753 33678899999999999999999999999999999999999999988776665 554
Q ss_pred C
Q 006500 477 N 477 (643)
Q Consensus 477 ~ 477 (643)
+
T Consensus 707 G 707 (776)
T KOG0390|consen 707 G 707 (776)
T ss_pred C
Confidence 4
No 125
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=3.3e-21 Score=219.48 Aligned_cols=325 Identities=20% Similarity=0.192 Sum_probs=212.8
Q ss_pred CCHHHHHHHHHHhcC---C-CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 006500 148 PTPIQAACIPLALTG---R-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (643)
Q Consensus 148 ~~~~Q~~~i~~~l~g---~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~ 223 (643)
..+.|..++..++.. . .+++.||||+|||.+.+++++..+... .....+++++.|++++..++++.++.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--ccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 488999999888874 4 778999999999999888888776553 1245689999999999999999999877655
Q ss_pred CceEEEEecCCChHHHHHH-----h---------cCCCcEEEECchhHHHHHhccCccC-C--CCeeEEEEeCCchhccC
Q 006500 224 DIRCCLVVGGLSTKMQETA-----L---------RSMPDIVVATPGRMIDHLRNSMSVD-L--DDLAVLILDEADRLLEL 286 (643)
Q Consensus 224 ~~~v~~~~g~~~~~~~~~~-----l---------~~~~~Ivv~Tp~~L~~~l~~~~~~~-l--~~i~~lVvDEah~l~~~ 286 (643)
++....++|.......... . ..-..++++||..+.........+. + -..+++|+||+|.+...
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 4433323333222111110 0 0113445555555444222211111 1 12468999999988765
Q ss_pred ChHHHHHHHHHHC-CCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEe-chhhhhH--HHHH-
Q 006500 287 GFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQ--EAVL- 361 (643)
Q Consensus 287 g~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~l- 361 (643)
.....+..++..+ ..+..+|++|||+|+.+.+.+...+.....+....... .......+... ....... ....
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~ 431 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFC--PKEDEPGLKRKERVDVEDGPQEELIE 431 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccc--ccccccccccccchhhhhhhhHhhhh
Confidence 3233333333322 24577899999999999998887766554433321100 00000000000 0000011 0111
Q ss_pred HHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhh----cCCceEEEecccccccCCCC
Q 006500 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR----KQHVDFLIATDVAARGLDII 437 (643)
Q Consensus 362 ~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~----~g~~~vLvaT~~~~~GlDi~ 437 (643)
........+.+++|.|||+..|.++...|+..+.++..|||.+...+|.+.++.+. .+...|+|||++.+-|+|+.
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 11122334679999999999999999999998888999999999999988887554 46788999999999999994
Q ss_pred CccEEEecCCCCChhHHHHHHhhcccCC--CccEEEEEeccCcH
Q 006500 438 GVQTVINYACPRDLTSYVHRVGRTARAG--REGYAVTFVTDNDR 479 (643)
Q Consensus 438 ~v~~VI~~d~p~s~~~y~Qr~GRagR~g--~~g~~~~l~~~~d~ 479 (643)
.+++|-= +....+.+||+||++|-| ..|.++++......
T Consensus 512 -fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 512 -FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred -cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 7777643 335789999999999998 57888877665543
No 126
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.87 E-value=5.8e-20 Score=213.54 Aligned_cols=330 Identities=19% Similarity=0.218 Sum_probs=204.0
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHH----HHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHH
Q 006500 132 LSRPLLRACEALGYSKPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (643)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~~Q~~~i~----~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~ 207 (643)
+++.+.+.+...||. +++.|.+.+. .+..++++++.||||+|||++|++|++.... . +.+++|.+||++
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~-----~~~vvi~t~t~~ 303 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T-----EKPVVISTNTKV 303 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C-----CCeEEEEeCcHH
Confidence 445677788888997 8999998665 5556899999999999999999999987764 1 236999999999
Q ss_pred HHHHHHH-HHHHHhhcCC--ceEEEEecCCChH---HH------------------------------------------
Q 006500 208 LAVQVHS-MIEKIAQFTD--IRCCLVVGGLSTK---MQ------------------------------------------ 239 (643)
Q Consensus 208 La~Q~~~-~~~~l~~~~~--~~v~~~~g~~~~~---~~------------------------------------------ 239 (643)
|..|+.. .+..+.+..+ +++..+.|+...- ..
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 9999865 5665555433 7777777654220 00
Q ss_pred --HHH------------------------hcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccC-------
Q 006500 240 --ETA------------------------LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL------- 286 (643)
Q Consensus 240 --~~~------------------------l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~------- 286 (643)
+.. ....++|||+...-|+..+.... ..+....++||||||+|.+.
T Consensus 384 ~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~-~ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 384 MFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP-ELFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc-ccCCCCCEEEEECcchHHHHHHHHhcc
Confidence 000 01226899999998888775432 23455689999999996420
Q ss_pred Ch-----HHH-------------------------------------------------------------HHHH---HH
Q 006500 287 GF-----SAE-------------------------------------------------------------IHEL---VR 297 (643)
Q Consensus 287 g~-----~~~-------------------------------------------------------------~~~i---~~ 297 (643)
.+ ... ...+ +.
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 00 000 0000 00
Q ss_pred H-----------C-------------------------------------CCCceeEEEeeccchh--HHHHHH-HhcCC
Q 006500 298 L-----------C-------------------------------------PKRRQTMLFSATLTED--VDELIK-LSLTK 326 (643)
Q Consensus 298 ~-----------~-------------------------------------~~~~q~i~~SAT~~~~--~~~~~~-~~~~~ 326 (643)
. + +....+|++|||++.. ...+.. +.+..
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 0 0 0124678999999732 222222 22222
Q ss_pred CeEEecCCCCCCCCCc-eEEEEEEec----h----hhhh---HHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhh--
Q 006500 327 PLRLSADPSAKRPSTL-TEEVVRIRR----M----REVN---QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-- 392 (643)
Q Consensus 327 p~~~~~~~~~~~~~~~-~~~~~~~~~----~----~~~~---~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~-- 392 (643)
....... ..|-.. .+..+.+.. . .... -...+..++.. .++++|||++|+..++.++..|..
T Consensus 623 ~~~~~~~---~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 623 VHFNTIE---PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred cccceec---CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 1111111 011111 111111111 0 0111 11122233333 457999999999999999999875
Q ss_pred --cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCcc--EEEecCCCCC-h----------------
Q 006500 393 --AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ--TVINYACPRD-L---------------- 451 (643)
Q Consensus 393 --~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~--~VI~~d~p~s-~---------------- 451 (643)
.++.+ +..+.. ..|..+++.|++|+..||++|+.+.+|||+|+.. +||+..+|.. |
T Consensus 699 ~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g 775 (850)
T TIGR01407 699 EFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEG 775 (850)
T ss_pred cccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhc
Confidence 23343 333333 5788999999999999999999999999999965 5777777741 1
Q ss_pred -------------hHHHHHHhhcccCCCccEEEEEecc
Q 006500 452 -------------TSYVHRVGRTARAGREGYAVTFVTD 476 (643)
Q Consensus 452 -------------~~y~Qr~GRagR~g~~g~~~~l~~~ 476 (643)
..+.|.+||.-|.....-++++++.
T Consensus 776 ~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 776 KNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred CCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 2234999999996644334444443
No 127
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=2.5e-20 Score=188.55 Aligned_cols=330 Identities=20% Similarity=0.168 Sum_probs=215.4
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
.+.|...+.++...+.++...--..+.++.+.+..+.+++-+++.|.||||||++....++...+... ..|....
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-----~~v~CTQ 98 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-----TGVACTQ 98 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-----cceeecC
Confidence 67788889999988888776544566777778888888899999999999999865555555544332 2488999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchh
Q 006500 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (643)
|.|..|.+++.....- .++..+--+|-.- .++.....++=.-++|.+.|++...+ .-.+..+++||+||||.-
T Consensus 99 prrvaamsva~RVadE---MDv~lG~EVGysI--rfEdC~~~~T~Lky~tDgmLlrEams--~p~l~~y~viiLDeahER 171 (699)
T KOG0925|consen 99 PRRVAAMSVAQRVADE---MDVTLGEEVGYSI--RFEDCTSPNTLLKYCTDGMLLREAMS--DPLLGRYGVIILDEAHER 171 (699)
T ss_pred chHHHHHHHHHHHHHH---hccccchhccccc--cccccCChhHHHHHhcchHHHHHHhh--CcccccccEEEechhhhh
Confidence 9999999887665543 2333222222110 01111111112236788888877666 346889999999999963
Q ss_pred c-cCC-hHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHH
Q 006500 284 L-ELG-FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361 (643)
Q Consensus 284 ~-~~g-~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 361 (643)
. ... ..-.+..++... +..++|++|||+.. ..+ +.++.++..+.+.. ..|..+ -................+
T Consensus 172 tlATDiLmGllk~v~~~r-pdLk~vvmSatl~a--~Kf-q~yf~n~Pll~vpg--~~PvEi-~Yt~e~erDylEaairtV 244 (699)
T KOG0925|consen 172 TLATDILMGLLKEVVRNR-PDLKLVVMSATLDA--EKF-QRYFGNAPLLAVPG--THPVEI-FYTPEPERDYLEAAIRTV 244 (699)
T ss_pred hHHHHHHHHHHHHHHhhC-CCceEEEeecccch--HHH-HHHhCCCCeeecCC--CCceEE-EecCCCChhHHHHHHHHH
Confidence 2 211 222334444444 48899999999853 333 34455544444422 222211 000111122223333445
Q ss_pred HHHhhccCCceEEEEeCCHHHHHHHHHHHhhc---------CCceEEccCCCCHHHHHHHHHHhhc---C--CceEEEec
Q 006500 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA---------ALKAAELHGNLTQAQRLEALELFRK---Q--HVDFLIAT 427 (643)
Q Consensus 362 ~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~---------~~~~~~lh~~~~~~~R~~~l~~F~~---g--~~~vLvaT 427 (643)
+.++....++-+|||..+.+.++...+.+... .+++..|| +.++.++++.... | ..+|+|+|
T Consensus 245 ~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvst 320 (699)
T KOG0925|consen 245 LQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVST 320 (699)
T ss_pred HHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEe
Confidence 56666667889999999999888777766521 35788888 4444455444332 2 46799999
Q ss_pred ccccccCCCCCccEEEecCC------------------CCChhHHHHHHhhcccCCCccEEEEEeccC
Q 006500 428 DVAARGLDIIGVQTVINYAC------------------PRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (643)
Q Consensus 428 ~~~~~GlDi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~ 477 (643)
+++...+.|++|.+||.-++ |-|-.+-.||.||+||. ++|+|+.|+++.
T Consensus 321 niaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 321 NIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred cchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 99999999999999996443 44667788999999995 699999999874
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.7e-18 Score=187.95 Aligned_cols=320 Identities=21% Similarity=0.215 Sum_probs=217.0
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
+|. .|++.|.-+.-.++.|+ |+.+.||+|||++..+|++...+.. ..|-|++|+--||.|-++++..+..+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G------~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQG------RRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcC------CCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 465 58999999998888774 7899999999999999988776543 34899999999999999999999999
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhH-HHHHhcc-----CccCCCCeeEEEEeCCchhccC---------C
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNS-----MSVDLDDLAVLILDEADRLLEL---------G 287 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~-----~~~~l~~i~~lVvDEah~l~~~---------g 287 (643)
.|++++++.++.+........ .+||+++|..-| .++|+.. .......+.++||||+|.++-. |
T Consensus 146 LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg 223 (764)
T PRK12326 146 LGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAG 223 (764)
T ss_pred cCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeC
Confidence 999999999987766544433 589999998654 2233322 1223456889999999984310 0
Q ss_pred ------hHHHHHHHHHHCCC------------------------------------------------------------
Q 006500 288 ------FSAEIHELVRLCPK------------------------------------------------------------ 301 (643)
Q Consensus 288 ------~~~~~~~i~~~~~~------------------------------------------------------------ 301 (643)
....+..+...+..
T Consensus 224 ~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~d 303 (764)
T PRK12326 224 STPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVH 303 (764)
T ss_pred CCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 01111111111100
Q ss_pred ----------------------------------------------------------CceeEEEeeccchhHHHHHHHh
Q 006500 302 ----------------------------------------------------------RRQTMLFSATLTEDVDELIKLS 323 (643)
Q Consensus 302 ----------------------------------------------------------~~q~i~~SAT~~~~~~~~~~~~ 323 (643)
-.++.+||+|......++...+
T Consensus 304 YiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY 383 (764)
T PRK12326 304 YIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY 383 (764)
T ss_pred EEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh
Confidence 0245667777765555555443
Q ss_pred cCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHh-h-ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEcc
Q 006500 324 LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC-S-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401 (643)
Q Consensus 324 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh 401 (643)
-...+.+.. . .|......-..+-. ....+...+..-+ . ...+.+|||.|.|....+.|+.+|...|++...|+
T Consensus 384 ~l~Vv~IPt---n-kp~~R~d~~d~iy~-t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLN 458 (764)
T PRK12326 384 DLGVSVIPP---N-KPNIREDEADRVYA-TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLN 458 (764)
T ss_pred CCcEEECCC---C-CCceeecCCCceEe-CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeec
Confidence 322222111 1 11111110001111 1222333332222 2 23577999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCC-ceEEEecccccccCCCC---------------CccEEEecCCCCChhHHHHHHhhcccCC
Q 006500 402 GNLTQAQRLEALELFRKQH-VDFLIATDVAARGLDII---------------GVQTVINYACPRDLTSYVHRVGRTARAG 465 (643)
Q Consensus 402 ~~~~~~~R~~~l~~F~~g~-~~vLvaT~~~~~GlDi~---------------~v~~VI~~d~p~s~~~y~Qr~GRagR~g 465 (643)
+.-...+ ..++. ..|+ -.|.|||+.|+||.||. |==|||-...|.|..-..|-.||+||-|
T Consensus 459 Ak~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 459 AKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred cCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC
Confidence 8744333 23332 2343 45999999999999996 2247999999999999999999999999
Q ss_pred CccEEEEEeccCcHHH
Q 006500 466 REGYAVTFVTDNDRSL 481 (643)
Q Consensus 466 ~~g~~~~l~~~~d~~~ 481 (643)
.+|.+..|+|-.|.-+
T Consensus 536 DpGss~f~lSleDdl~ 551 (764)
T PRK12326 536 DPGSSVFFVSLEDDVV 551 (764)
T ss_pred CCCceeEEEEcchhHH
Confidence 9999999999887544
No 129
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.85 E-value=3.3e-20 Score=194.46 Aligned_cols=112 Identities=16% Similarity=0.261 Sum_probs=101.0
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCC-ceEEEecccccccCCCCCccEEEec
Q 006500 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH-VDFLIATDVAARGLDIIGVQTVINY 445 (643)
Q Consensus 367 ~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~-~~vLvaT~~~~~GlDi~~v~~VI~~ 445 (643)
+..++++|+|++..++...+..||...++....|+|.....+|..++..|+... +-+|++|.+++.||++..+++||+|
T Consensus 1041 kaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFY 1120 (1185)
T KOG0388|consen 1041 KAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFY 1120 (1185)
T ss_pred hcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEe
Confidence 345789999999999999999999999999999999999999999999999854 4578999999999999999999999
Q ss_pred CCCCChhHHHHHHhhcccCCCcc--EEEEEeccCc
Q 006500 446 ACPRDLTSYVHRVGRTARAGREG--YAVTFVTDND 478 (643)
Q Consensus 446 d~p~s~~~y~Qr~GRagR~g~~g--~~~~l~~~~d 478 (643)
|..|||....|.+.||+|.|+.- .+|.|+...+
T Consensus 1121 dSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1121 DSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred cCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 99999999999999999999764 4566666554
No 130
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.84 E-value=3.9e-19 Score=200.44 Aligned_cols=301 Identities=19% Similarity=0.164 Sum_probs=177.8
Q ss_pred CCHHHHHHHHHHhc----------CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006500 148 PTPIQAACIPLALT----------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (643)
Q Consensus 148 ~~~~Q~~~i~~~l~----------g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 217 (643)
++++|..++..++. .+..+++.+||||||++ ++.+...++.. ...+++|||+|+.+|..|+.+.|.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t-~~~la~~l~~~---~~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLT-MLFAARKALEL---LKNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHH-HHHHHHHHHhh---cCCCeEEEEECcHHHHHHHHHHHH
Confidence 68889998877643 25799999999999987 34444444432 235689999999999999999999
Q ss_pred HHhhcCCceEEEEecCCChHHHHHHhc-CCCcEEEECchhHHHHHhcc-CccCCCCe-eEEEEeCCchhccCChHHHHHH
Q 006500 218 KIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNS-MSVDLDDL-AVLILDEADRLLELGFSAEIHE 294 (643)
Q Consensus 218 ~l~~~~~~~v~~~~g~~~~~~~~~~l~-~~~~Ivv~Tp~~L~~~l~~~-~~~~l~~i-~~lVvDEah~l~~~g~~~~~~~ 294 (643)
.+.... ..+..+.......+. ....|+|+|...|...+... ..+....- -+||+||||+.....+.. .
T Consensus 315 ~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~---~ 385 (667)
T TIGR00348 315 SLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAK---N 385 (667)
T ss_pred hhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHH---H
Confidence 874310 111112222222232 34689999999997644321 11111111 289999999865332222 2
Q ss_pred HHHHCCCCceeEEEeeccchhHHHHHHHhc----CCCeEEecCCCCCCCCCceEEEE-E-------Eech----------
Q 006500 295 LVRLCPKRRQTMLFSATLTEDVDELIKLSL----TKPLRLSADPSAKRPSTLTEEVV-R-------IRRM---------- 352 (643)
Q Consensus 295 i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~-~-------~~~~---------- 352 (643)
+...+| +...++|||||-..........+ ..++.. ..-......++.-.+. . +...
T Consensus 386 l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~ 463 (667)
T TIGR00348 386 LKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIF 463 (667)
T ss_pred HHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHH
Confidence 223444 46789999999532111110111 111111 0000000000000000 0 0000
Q ss_pred -------hhhh------------------------HHHHHHHHhh--ccCCceEEEEeCCHHHHHHHHHHHhhc-----C
Q 006500 353 -------REVN------------------------QEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLA-----A 394 (643)
Q Consensus 353 -------~~~~------------------------~~~~l~~~~~--~~~~~~~LIF~~s~~~~~~l~~~L~~~-----~ 394 (643)
.... ...++..+.. ...+++++|||.++..|.++...|... +
T Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~ 543 (667)
T TIGR00348 464 ELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFE 543 (667)
T ss_pred HhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccC
Confidence 0000 0000111111 122479999999999999999888654 2
Q ss_pred CceEEccCCCCHH---------------------HHHHHHHHhhc-CCceEEEecccccccCCCCCccEEEecCCCCChh
Q 006500 395 LKAAELHGNLTQA---------------------QRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYACPRDLT 452 (643)
Q Consensus 395 ~~~~~lh~~~~~~---------------------~R~~~l~~F~~-g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~ 452 (643)
..+..+++..+.. ....++++|++ +..+|||.++.+.+|+|.|.+++++..-+-.+ .
T Consensus 544 ~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h 622 (667)
T TIGR00348 544 ASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-H 622 (667)
T ss_pred CeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-c
Confidence 4455666654332 12468889976 67899999999999999999999987765554 5
Q ss_pred HHHHHHhhcccC
Q 006500 453 SYVHRVGRTARA 464 (643)
Q Consensus 453 ~y~Qr~GRagR~ 464 (643)
.++|.+||+.|.
T Consensus 623 ~LlQai~R~nR~ 634 (667)
T TIGR00348 623 GLLQAIARTNRI 634 (667)
T ss_pred HHHHHHHHhccc
Confidence 689999999994
No 131
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=8.9e-19 Score=193.38 Aligned_cols=322 Identities=20% Similarity=0.257 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHHHhcC----CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 147 KPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
.+.+-|+.++..+... ...++.|.||||||-+| +.+++..+... ..+|||+|-..|..|+.+.|+..+
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvY-l~~i~~~L~~G-----kqvLvLVPEI~Ltpq~~~rf~~rF-- 269 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVY-LEAIAKVLAQG-----KQVLVLVPEIALTPQLLARFKARF-- 269 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHH-HHHHHHHHHcC-----CEEEEEeccccchHHHHHHHHHHh--
Confidence 5678899999988765 67889999999999996 55555555543 359999999999999999998764
Q ss_pred CCceEEEEecCCChHHHHH----HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc-----cCChHHHHH
Q 006500 223 TDIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-----ELGFSAEIH 293 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~----~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~-----~~g~~~~~~ 293 (643)
+.++.+++++.+...... ...+...|||+|=-.| ...+.++++|||||=|.-. ...+...-.
T Consensus 270 -g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdv 340 (730)
T COG1198 270 -GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDV 340 (730)
T ss_pred -CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh--------cCchhhccEEEEeccccccccCCcCCCcCHHHH
Confidence 588899999988765432 3346789999993332 2357889999999999754 122334444
Q ss_pred HHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhh----HHHHHHHHhh-cc
Q 006500 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN----QEAVLLSLCS-KT 368 (643)
Q Consensus 294 ~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~-~~ 368 (643)
.+++....+.++|+-|||++-+........ ....+...............++..+...... ....+..+-. -.
T Consensus 341 A~~Ra~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~ 418 (730)
T COG1198 341 AVLRAKKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE 418 (730)
T ss_pred HHHHHHHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh
Confidence 455555567889999999875444433221 1111111111111101111111111111000 0111111111 11
Q ss_pred CCceEEEEeCCHHH------------------------------------------------------------HHHHHH
Q 006500 369 FTSKVIIFSGTKQA------------------------------------------------------------AHRLKI 388 (643)
Q Consensus 369 ~~~~~LIF~~s~~~------------------------------------------------------------~~~l~~ 388 (643)
.+..+|||.|.+.- .+++.+
T Consensus 419 ~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteriee 498 (730)
T COG1198 419 RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEE 498 (730)
T ss_pred cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHH
Confidence 12344444433211 123333
Q ss_pred HHhh--cCCceEEccCCCCHHH--HHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCC------------Chh
Q 006500 389 LFGL--AALKAAELHGNLTQAQ--RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------DLT 452 (643)
Q Consensus 389 ~L~~--~~~~~~~lh~~~~~~~--R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~------------s~~ 452 (643)
.|.. .+.++..+.++++... -...+..|.+|+.+|||.|..++.|.|+|+++.|...|... ..+
T Consensus 499 eL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fq 578 (730)
T COG1198 499 ELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQ 578 (730)
T ss_pred HHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHH
Confidence 3332 2567888888876644 46789999999999999999999999999999988766553 345
Q ss_pred HHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHH
Q 006500 453 SYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 453 ~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~ 487 (643)
.+.|-.|||||++.+|.+++-...-+...+..+..
T Consensus 579 ll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 579 LLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 67899999999999999999887777777666654
No 132
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.83 E-value=8.1e-19 Score=168.92 Aligned_cols=186 Identities=40% Similarity=0.600 Sum_probs=151.2
Q ss_pred CCCCCCCHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 143 LGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
.++..|+++|.++++.++.+ +.++++++||+|||.++..+++..+.... ..++||++|++.++.|+...+..+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~----~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK----GKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC----CCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 46778999999999999999 99999999999999988888888775432 23699999999999999999998765
Q ss_pred cCCceEEEEecCCChHHHHHHhcCCC-cEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCC
Q 006500 222 FTDIRCCLVVGGLSTKMQETALRSMP-DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (643)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l~~~~-~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~ 300 (643)
..........++.........+.... +|+++|++.+...+.... .....+.++||||||.+....+...+..++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 80 SLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred cCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 54434444555555444444455555 999999999999887753 5667789999999999997678888889988888
Q ss_pred CCceeEEEeeccchhHHHHHHHhcCCCeEEecC
Q 006500 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (643)
Q Consensus 301 ~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~ 333 (643)
...+++++|||+++........++...+.+...
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred ccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 889999999999998888888888776666553
No 133
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=7.4e-18 Score=187.31 Aligned_cols=320 Identities=18% Similarity=0.208 Sum_probs=212.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
+|. .|+++|--+--.+. ..-|+.+.||+|||+++.+|++-..+.. ..|-|++||--||.|-++++..+..+
T Consensus 79 lGm-~~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~G------~~VhvvT~ndyLA~RD~e~m~~l~~~ 149 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALSG------KGVHVVTVNDYLARRDANWMRPLYEF 149 (913)
T ss_pred hCC-CcchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHcC------CCEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 453 57777876655454 4568999999999999999998666543 34899999999999999999999999
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhH-HHHHhccCc-----cCCCCeeEEEEeCCchhc-c--------CC
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLL-E--------LG 287 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~~~-----~~l~~i~~lVvDEah~l~-~--------~g 287 (643)
.|++++++.++.+.......+ .+||+++|..-| .++|+.... .-...+.++||||+|.++ + .|
T Consensus 150 lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg 227 (913)
T PRK13103 150 LGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISG 227 (913)
T ss_pred cCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecC
Confidence 999999999887766555444 389999998876 344443211 124778899999999954 1 00
Q ss_pred -------hHHHHHHHHHHC-------------------------------------------------------------
Q 006500 288 -------FSAEIHELVRLC------------------------------------------------------------- 299 (643)
Q Consensus 288 -------~~~~~~~i~~~~------------------------------------------------------------- 299 (643)
....+..+...+
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~ 307 (913)
T PRK13103 228 QAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLL 307 (913)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHH
Confidence 000000000000
Q ss_pred -------------CC-------------------------------------------------------------Ccee
Q 006500 300 -------------PK-------------------------------------------------------------RRQT 305 (643)
Q Consensus 300 -------------~~-------------------------------------------------------------~~q~ 305 (643)
.+ -.++
T Consensus 308 ~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (913)
T PRK13103 308 THVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKL 387 (913)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchh
Confidence 00 0134
Q ss_pred EEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhh--ccCCceEEEEeCCHHHH
Q 006500 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAA 383 (643)
Q Consensus 306 i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~LIF~~s~~~~ 383 (643)
-+||+|...+..++...+-...+.+.......+. .....+.. ....+...+..-+. ...+.+|||-+.|....
T Consensus 388 sGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~-D~~d~vy~----t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~S 462 (913)
T PRK13103 388 SGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARK-DFNDLVYL----TAEEKYAAIITDIKECMALGRPVLVGTATIETS 462 (913)
T ss_pred ccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccc-cCCCeEEc----CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHH
Confidence 4555555544444444332222222211111111 11111111 12223333332222 23477999999999999
Q ss_pred HHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcC-CceEEEecccccccCCCC-------------------------
Q 006500 384 HRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDII------------------------- 437 (643)
Q Consensus 384 ~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g-~~~vLvaT~~~~~GlDi~------------------------- 437 (643)
+.|+.+|...|++.-.|+......+ ..++. ..| .-.|.|||+.|+||.||.
T Consensus 463 E~ls~~L~~~gi~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 463 EHMSNLLKKEGIEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHcCCcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 9999999999999888888644333 22222 345 456999999999999994
Q ss_pred ------------CccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHH
Q 006500 438 ------------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (643)
Q Consensus 438 ------------~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~ 481 (643)
|==+||-...+.|..--.|-.||+||-|.+|.+..|+|-.|.-+
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 22379999999999999999999999999999999999877543
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=7.9e-17 Score=177.27 Aligned_cols=319 Identities=18% Similarity=0.208 Sum_probs=212.6
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
+|. +|++.|.-+.-.+..| -|+.+.||-|||++..+|++-..+.. ..|-|++..--||..=++++..+..+
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~G------kgVhVVTvNdYLA~RDae~mg~vy~f 145 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTG------KGVIVSTVNEYLAERDAEEMGKVFNF 145 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcC------CceEEEecchhhhhhhHHHHHHHHHH
Confidence 455 5888998887666666 48999999999999999986554432 23778888889999999999999999
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhH-HHHHhccCc-----cCCCCeeEEEEeCCchhc-cC--------C
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLL-EL--------G 287 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~~~-----~~l~~i~~lVvDEah~l~-~~--------g 287 (643)
.|++|+++..+........ .+.+||+++|..-| .++|+.... .-...+.+.||||+|.++ +. |
T Consensus 146 LGLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg 223 (925)
T PRK12903 146 LGLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISG 223 (925)
T ss_pred hCCceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccC
Confidence 9999999988776654443 34689999998765 344544321 224667899999999854 10 0
Q ss_pred -------hHHHHHHHHHHCCC-----------------------------------------------------------
Q 006500 288 -------FSAEIHELVRLCPK----------------------------------------------------------- 301 (643)
Q Consensus 288 -------~~~~~~~i~~~~~~----------------------------------------------------------- 301 (643)
+...+..+...+..
T Consensus 224 ~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dY 303 (925)
T PRK12903 224 GQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEY 303 (925)
T ss_pred CCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 11111111111100
Q ss_pred ---------------------------------------------------------CceeEEEeeccchhHHHHHHHhc
Q 006500 302 ---------------------------------------------------------RRQTMLFSATLTEDVDELIKLSL 324 (643)
Q Consensus 302 ---------------------------------------------------------~~q~i~~SAT~~~~~~~~~~~~~ 324 (643)
-.++-+||+|...+-.++...+-
T Consensus 304 iV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~ 383 (925)
T PRK12903 304 IVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYN 383 (925)
T ss_pred EEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhC
Confidence 01345566666555555554333
Q ss_pred CCCeEEecCCCCCCCCCceEEE-EEEechhhhhHHHHHHH-Hhh-ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEcc
Q 006500 325 TKPLRLSADPSAKRPSTLTEEV-VRIRRMREVNQEAVLLS-LCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401 (643)
Q Consensus 325 ~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~-~~~-~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh 401 (643)
...+.+... +|......- ..+. ....+...+.. +.. ...+.+|||.|.|....+.|+.+|...|++...|+
T Consensus 384 l~Vv~IPTn----kP~~R~D~~d~iy~--t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLN 457 (925)
T PRK12903 384 MRVNVVPTN----KPVIRKDEPDSIFG--TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLN 457 (925)
T ss_pred CCEEECCCC----CCeeeeeCCCcEEE--cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeec
Confidence 222222111 111111100 0111 11223333322 222 23577999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHhhcC-CceEEEecccccccCCCCCcc--------EEEecCCCCChhHHHHHHhhcccCCCccEEEE
Q 006500 402 GNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDIIGVQ--------TVINYACPRDLTSYVHRVGRTARAGREGYAVT 472 (643)
Q Consensus 402 ~~~~~~~R~~~l~~F~~g-~~~vLvaT~~~~~GlDi~~v~--------~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~ 472 (643)
+.-. ++...+-. ..| .-.|.|||+.|+||.||.--. |||....|.|..-.-|..||+||.|.+|.+..
T Consensus 458 Ak~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 458 AKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred ccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 8633 33332222 445 456999999999999996332 89999999999999999999999999999999
Q ss_pred EeccCcHHH
Q 006500 473 FVTDNDRSL 481 (643)
Q Consensus 473 l~~~~d~~~ 481 (643)
|+|-.|.-+
T Consensus 535 ~lSLeD~L~ 543 (925)
T PRK12903 535 FISLDDQLF 543 (925)
T ss_pred EEecchHHH
Confidence 999877433
No 135
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.80 E-value=7.4e-18 Score=171.15 Aligned_cols=326 Identities=14% Similarity=0.180 Sum_probs=210.8
Q ss_pred CCCCCHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 006500 145 YSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (643)
Q Consensus 145 ~~~~~~~Q~~~i~~~l~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~ 223 (643)
+..+.|+|.+.+..++. |..+++...+|.|||+++ |.+ ...++.. ...||+||.. +-.-|.+.+..|..-.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laI-A~yyraE-----wplliVcPAs-vrftWa~al~r~lps~ 267 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAI-ARYYRAE-----WPLLIVCPAS-VRFTWAKALNRFLPSI 267 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHH-HHHHhhc-----CcEEEEecHH-HhHHHHHHHHHhcccc
Confidence 33578999999988776 678999999999999974 333 3333321 1389999984 4466888888886532
Q ss_pred CceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCc
Q 006500 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (643)
Q Consensus 224 ~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~ 303 (643)
. .+.++.++.+.- ..+-....|.|.+++.|..+ .+ .+.-..+.+||+||+|.|-+.. ......++..+....
T Consensus 268 ~-pi~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l-~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 268 H-PIFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLL-HD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAK 339 (689)
T ss_pred c-ceEEEecccCCc---cccccCCeEEEEEHHHHHHH-HH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhh
Confidence 2 244445543321 11233457899999887543 22 2334568999999999887643 223444555555556
Q ss_pred eeEEEeeccc-------------------hhHHHHHHHhcCC---CeEEecCC------------------------CCC
Q 006500 304 QTMLFSATLT-------------------EDVDELIKLSLTK---PLRLSADP------------------------SAK 337 (643)
Q Consensus 304 q~i~~SAT~~-------------------~~~~~~~~~~~~~---p~~~~~~~------------------------~~~ 337 (643)
.+|++|+|+. ++..++...+|.. ++.+.... -.+
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999974 1222222222221 01111100 011
Q ss_pred CCCCceEEEEEEechhhh-----------------------------------hHHHHHHHH------hhccCCceEEEE
Q 006500 338 RPSTLTEEVVRIRRMREV-----------------------------------NQEAVLLSL------CSKTFTSKVIIF 376 (643)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~l~~~------~~~~~~~~~LIF 376 (643)
.|+. .+.++.+-..... .+...+..+ +....+.+.|||
T Consensus 420 LPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 420 LPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred CCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 2222 1111111100000 000001111 123346789999
Q ss_pred eCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcC-CceE-EEecccccccCCCCCccEEEecCCCCChhHH
Q 006500 377 SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDF-LIATDVAARGLDIIGVQTVINYACPRDLTSY 454 (643)
Q Consensus 377 ~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g-~~~v-LvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y 454 (643)
+--....+-+...+...++....|+|.++..+|..+.+.|+.. ++.| +++..+++.||++...+.|++..++|||.-.
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvL 578 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVL 578 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceE
Confidence 9999999999999999999999999999999999999999965 4555 6678889999999999999999999999999
Q ss_pred HHHHhhcccCCCccEEE--EEeccCc--HHHHHHHHH
Q 006500 455 VHRVGRTARAGREGYAV--TFVTDND--RSLLKAIAK 487 (643)
Q Consensus 455 ~Qr~GRagR~g~~g~~~--~l~~~~d--~~~l~~i~~ 487 (643)
+|.-.|++|.|++..+. .|+.+.+ ..++..+.+
T Consensus 579 lQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~ 615 (689)
T KOG1000|consen 579 LQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQ 615 (689)
T ss_pred EechhhhhhccccceeeEEEEEecCchHHHHHHHHHH
Confidence 99999999999876544 3445543 334444443
No 136
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=3.5e-18 Score=184.94 Aligned_cols=298 Identities=20% Similarity=0.223 Sum_probs=191.8
Q ss_pred CCCCHHHHHHHHHHhc----C-CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006500 146 SKPTPIQAACIPLALT----G-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (643)
Q Consensus 146 ~~~~~~Q~~~i~~~l~----g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~ 220 (643)
..++.||..||..+.. | +-+|+++.||+|||.+ .+.++.+|.+... ..+||+|+-++.|+.|.+..+..+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~---~KRVLFLaDR~~Lv~QA~~af~~~~ 239 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGW---VKRVLFLADRNALVDQAYGAFEDFL 239 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhcch---hheeeEEechHHHHHHHHHHHHHhC
Confidence 4589999999877654 4 4588999999999988 5777777776532 3479999999999999999988876
Q ss_pred hcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhcc----CccCCCCeeEEEEeCCchhccCChHHHHHHHH
Q 006500 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLELGFSAEIHELV 296 (643)
Q Consensus 221 ~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~----~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~ 296 (643)
.+.. .+..+.+.. ....+.|.|+|+..|...+... ..+....+++|||||||+-.-..+ ..|+
T Consensus 240 P~~~-~~n~i~~~~--------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~----~~I~ 306 (875)
T COG4096 240 PFGT-KMNKIEDKK--------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEW----SSIL 306 (875)
T ss_pred CCcc-ceeeeeccc--------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhh----HHHH
Confidence 5422 222222221 1125799999999998887654 123466799999999998543222 2444
Q ss_pred HHCCCCceeEEEeeccchhHHHHHHHhc-CCCeEE----------------------ecCCCCCCCCCceEE--------
Q 006500 297 RLCPKRRQTMLFSATLTEDVDELIKLSL-TKPLRL----------------------SADPSAKRPSTLTEE-------- 345 (643)
Q Consensus 297 ~~~~~~~q~i~~SAT~~~~~~~~~~~~~-~~p~~~----------------------~~~~~~~~~~~~~~~-------- 345 (643)
.++..-. +++|||+...+....-.++ ..|+.. .+......+..+...
T Consensus 307 dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i 384 (875)
T COG4096 307 DYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI 384 (875)
T ss_pred HHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcccc
Confidence 4433222 4459998765544433333 333211 111111111111000
Q ss_pred -----EEEEe--------chhhhhHHHHHHHHhhc--cC--CceEEEEeCCHHHHHHHHHHHhhc-----CCceEEccCC
Q 006500 346 -----VVRIR--------RMREVNQEAVLLSLCSK--TF--TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGN 403 (643)
Q Consensus 346 -----~~~~~--------~~~~~~~~~~l~~~~~~--~~--~~~~LIF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~ 403 (643)
..... ......-...+...+.. .. .+++||||.+..+|+++...|... +--+..|.|.
T Consensus 385 ~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d 464 (875)
T COG4096 385 DEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD 464 (875)
T ss_pred CcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc
Confidence 00000 00001111223333333 11 368999999999999999999765 2335566665
Q ss_pred CCHHHHHHHHHHhhcC--CceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccC
Q 006500 404 LTQAQRLEALELFRKQ--HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464 (643)
Q Consensus 404 ~~~~~R~~~l~~F~~g--~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~ 464 (643)
..+. ...+..|... -..|.|+.+++.+|+|+|.|..+|.+-.-.|..-|.|++||+-|.
T Consensus 465 ~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 465 AEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred chhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 5443 3455666553 346899999999999999999999999999999999999999884
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.79 E-value=4.3e-17 Score=187.03 Aligned_cols=288 Identities=19% Similarity=0.240 Sum_probs=177.4
Q ss_pred HHCCCCCCCHHHHHHHHH----HhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHH-HHH
Q 006500 141 EALGYSKPTPIQAACIPL----ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-HSM 215 (643)
Q Consensus 141 ~~~g~~~~~~~Q~~~i~~----~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~-~~~ 215 (643)
...||. +++-|.+.+.. +..+..+++.|+||+|||++|++|++... .+.++||++||++|+.|+ ...
T Consensus 240 ~~~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 240 ALLGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred ccCCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHH
Confidence 334664 89999884433 33467888999999999999999988754 134699999999999999 477
Q ss_pred HHHHhhcCCceEEEEecCCChHH---H--------------------------------------------HHHh-----
Q 006500 216 IEKIAQFTDIRCCLVVGGLSTKM---Q--------------------------------------------ETAL----- 243 (643)
Q Consensus 216 ~~~l~~~~~~~v~~~~g~~~~~~---~--------------------------------------------~~~l----- 243 (643)
+..+.+..++++..+.|+.+.-- . +..+
T Consensus 312 i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 312 VKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 88887777888887777643110 0 0000
Q ss_pred -------------------cCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC-----h----H---HH-
Q 006500 244 -------------------RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----F----S---AE- 291 (643)
Q Consensus 244 -------------------~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g-----~----~---~~- 291 (643)
...+||||+.-.-|+..+.... .+...+++||||||++.+.. . . ..
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l 469 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTI 469 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHH
Confidence 1126899999888877664432 35678999999999964210 0 0 00
Q ss_pred ------------------------------------------HHH-------H--------HHH----------------
Q 006500 292 ------------------------------------------IHE-------L--------VRL---------------- 298 (643)
Q Consensus 292 ------------------------------------------~~~-------i--------~~~---------------- 298 (643)
+.. + ...
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~ 549 (820)
T PRK07246 470 QKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQS 549 (820)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 000 0 000
Q ss_pred --------------------CCCCceeEEEeeccc--hhHHHHHH-HhcCCCeEEecCCCCCCCCCceEEEEEE----ec
Q 006500 299 --------------------CPKRRQTMLFSATLT--EDVDELIK-LSLTKPLRLSADPSAKRPSTLTEEVVRI----RR 351 (643)
Q Consensus 299 --------------------~~~~~q~i~~SAT~~--~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~ 351 (643)
++....+|++|||++ +... +.. +.+......... .... .+..+.+ +.
T Consensus 550 ~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~--~~~~---~~~~~~i~~~~p~ 623 (820)
T PRK07246 550 EKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE--KDKK---QDQLVVVDQDMPL 623 (820)
T ss_pred CcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC--CChH---HccEEEeCCCCCC
Confidence 001136789999996 3322 222 222211111110 0000 1111111 11
Q ss_pred h----hhhh---HHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEE
Q 006500 352 M----REVN---QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424 (643)
Q Consensus 352 ~----~~~~---~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vL 424 (643)
. .... -...+..+. ..++++||+++|+...+.++..|....+.+ ...|... .+..++++|+++...||
T Consensus 624 ~~~~~~~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vL 698 (820)
T PRK07246 624 VTETSDEVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQIL 698 (820)
T ss_pred CCCCChHHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEE
Confidence 0 0011 111222333 346899999999999999999987655544 3334222 25668999999888999
Q ss_pred EecccccccCCCCC--ccEEEecCCCC
Q 006500 425 IATDVAARGLDIIG--VQTVINYACPR 449 (643)
Q Consensus 425 vaT~~~~~GlDi~~--v~~VI~~d~p~ 449 (643)
++|..+.+|+|+|+ ...||+..+|.
T Consensus 699 lG~~sFwEGVD~p~~~~~~viI~kLPF 725 (820)
T PRK07246 699 LGLGSFWEGVDFVQADRMIEVITRLPF 725 (820)
T ss_pred EecchhhCCCCCCCCCeEEEEEecCCC
Confidence 99999999999974 56677777663
No 138
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=180.97 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=116.9
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC-Cc
Q 006500 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DI 225 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~-~~ 225 (643)
.|..+|.+.+..+-.+...+|.|||.+|||.+ ..-+++.+++..+ ...||+++||.+|+.|+...+..-.... -.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD---~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESD---SDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcC---CCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 47889999999999999999999999999986 6777888887644 3469999999999999976665543222 22
Q ss_pred eEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhcc--CccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCc
Q 006500 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS--MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (643)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~--~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~ 303 (643)
+...+.|......+.. .-++.|+|+-|+-|-..|... .......++++|+||+|.+.+..-...+.+++...| .
T Consensus 587 rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--C 662 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--C 662 (1330)
T ss_pred cchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--C
Confidence 2233334322221111 225899999999998877663 223467899999999999987665555666666654 5
Q ss_pred eeEEEeeccch
Q 006500 304 QTMLFSATLTE 314 (643)
Q Consensus 304 q~i~~SAT~~~ 314 (643)
.++++|||+.+
T Consensus 663 P~L~LSATigN 673 (1330)
T KOG0949|consen 663 PFLVLSATIGN 673 (1330)
T ss_pred CeeEEecccCC
Confidence 58999999874
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.77 E-value=1.1e-15 Score=169.43 Aligned_cols=131 Identities=24% Similarity=0.273 Sum_probs=98.4
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
+|+. |++.|.-+.-.+ .+.-|+.+.||.|||+++.+|++-..+. +..|-|++++..||.+-++++..+..+
T Consensus 73 lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~------G~~VhVvT~NdyLA~RD~e~m~pvy~~ 143 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT------GKGVHIVTVNDYLAKRDQEWMGQIYRF 143 (870)
T ss_pred hCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc------CCceEEEeCCHHHHHHHHHHHHHHHHH
Confidence 4654 778887765444 5568999999999999999999644432 234899999999999999999999999
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchh-----HHHHHhcc-CccCCCCeeEEEEeCCchhc
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGR-----MIDHLRNS-MSVDLDDLAVLILDEADRLL 284 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~-----L~~~l~~~-~~~~l~~i~~lVvDEah~l~ 284 (643)
.|++|+++.++.+...... .+.+||+++|..- |.+.+... .......+.++||||+|.++
T Consensus 144 LGLsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 144 LGLTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred cCCceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999999988877654443 4558999999864 34433211 11234668899999999843
No 140
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.73 E-value=7.4e-18 Score=136.63 Aligned_cols=78 Identities=33% Similarity=0.599 Sum_probs=75.6
Q ss_pred HHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCC
Q 006500 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465 (643)
Q Consensus 388 ~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g 465 (643)
++|...++++..+||++++.+|..+++.|++|...|||||+++++|+|+|.+++||+|++|+|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999976
No 141
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.73 E-value=2e-17 Score=148.34 Aligned_cols=117 Identities=39% Similarity=0.603 Sum_probs=106.1
Q ss_pred HHHHHHHHhhcc--CCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccC
Q 006500 357 QEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (643)
Q Consensus 357 ~~~~l~~~~~~~--~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 434 (643)
+...+..++... .++++||||++...++.+..+|...+..+..+||.++..+|..++..|.+|...||++|..+++|+
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~ 92 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGI 92 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCc
Confidence 444444444433 367999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEE
Q 006500 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473 (643)
Q Consensus 435 Di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l 473 (643)
|+|++++||++++|++...|+|++||++|.|+.|.+++|
T Consensus 93 d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 93 DLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred ChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999988764
No 142
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.9e-14 Score=159.28 Aligned_cols=131 Identities=21% Similarity=0.225 Sum_probs=101.4
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
+|. .|+++|--+--.+ ...-|+.+.||-|||+++.+|++-..+.. ..|-||+++--||.+=++++..+..+
T Consensus 82 lG~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~G------kgVhVVTvNdYLA~RDae~m~~vy~~ 152 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALTG------KGVHVVTVNDYLARRDAEWMGQVHRF 152 (939)
T ss_pred hCC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhcC------CCeEEEeCCHHHHHhHHHHHHHHHHH
Confidence 454 4777777665555 45568999999999999999988665543 23899999999999999999999999
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhH-----HHHHhc-cCccCCCCeeEEEEeCCchhc
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-----IDHLRN-SMSVDLDDLAVLILDEADRLL 284 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-----~~~l~~-~~~~~l~~i~~lVvDEah~l~ 284 (643)
.|++|+++.++...... ...+.+||+++|+..| .+.+.. ........+.+.||||+|.++
T Consensus 153 LGLtvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 153 LGLSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred hCCeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99999999887766543 3456799999999876 555543 222345778899999999854
No 143
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.71 E-value=3.4e-15 Score=151.78 Aligned_cols=112 Identities=20% Similarity=0.282 Sum_probs=98.9
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcC-Cce-EEEecccccccCCCCCccEEEe
Q 006500 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVD-FLIATDVAARGLDIIGVQTVIN 444 (643)
Q Consensus 367 ~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g-~~~-vLvaT~~~~~GlDi~~v~~VI~ 444 (643)
+...-+.|||.+...+.+.+.-.|+..|++|+-|.|+|++..|...++.|.+. .+. +|++-.+++.-||+..+.+|++
T Consensus 635 rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm 714 (791)
T KOG1002|consen 635 RDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM 714 (791)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe
Confidence 33345789999999999999999999999999999999999999999999986 344 5778889999999999999999
Q ss_pred cCCCCChhHHHHHHhhcccCCC--ccEEEEEeccCc
Q 006500 445 YACPRDLTSYVHRVGRTARAGR--EGYAVTFVTDND 478 (643)
Q Consensus 445 ~d~p~s~~~y~Qr~GRagR~g~--~g~~~~l~~~~d 478 (643)
+|+=|||..-.|...|.+|+|+ +-.++.|+-++.
T Consensus 715 mDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 715 MDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred ecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 9999999999999999999995 567777776654
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.70 E-value=5.4e-15 Score=172.91 Aligned_cols=81 Identities=12% Similarity=0.152 Sum_probs=64.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHHhhcCC--ceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCC--ccEEEe
Q 006500 369 FTSKVIIFSGTKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG--VQTVIN 444 (643)
Q Consensus 369 ~~~~~LIF~~s~~~~~~l~~~L~~~~~--~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~--v~~VI~ 444 (643)
.++++|||++|+...+.+...|..... ....+--+++...|..+++.|+.+.-.||++|..+.+|+|+|+ +++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 467999999999999999999875422 1222333444456788999999988899999999999999998 588998
Q ss_pred cCCCC
Q 006500 445 YACPR 449 (643)
Q Consensus 445 ~d~p~ 449 (643)
..+|.
T Consensus 831 ~kLPF 835 (928)
T PRK08074 831 VRLPF 835 (928)
T ss_pred ecCCC
Confidence 88775
No 145
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=5.9e-16 Score=159.45 Aligned_cols=346 Identities=13% Similarity=0.067 Sum_probs=233.0
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006500 138 RACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (643)
Q Consensus 138 ~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 217 (643)
..+..+.......+|..+|..+..|+++++.-.|.+||.++|.+.....+...+. ...+++.|+.+++....+.+.
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~----s~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA----TNSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc----cceecchhHHHHhhccCCceE
Confidence 3445566667788999999999999999999999999999999988877665443 347999999999764332211
Q ss_pred HHhh-c--CCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhcc-Cc--cCCCCeeEEEEeCCchhccC-C--h
Q 006500 218 KIAQ-F--TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-MS--VDLDDLAVLILDEADRLLEL-G--F 288 (643)
Q Consensus 218 ~l~~-~--~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~-~~--~~l~~i~~lVvDEah~l~~~-g--~ 288 (643)
-... . ..--++-.+.+.+........+.+.+++++.|......+... .. ..+-...++++||+|..+.. + -
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~ 432 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALA 432 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHH
Confidence 1000 0 011233345555655666667778999999998876544321 11 12334568999999975532 1 2
Q ss_pred HHHHHHHHHHC-----CCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhh---H---
Q 006500 289 SAEIHELVRLC-----PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN---Q--- 357 (643)
Q Consensus 289 ~~~~~~i~~~~-----~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 357 (643)
...+..+.+.+ ..+.|++--|||+...+......+--+-+.+.. ....|..-.+.+++-++..... +
T Consensus 433 ~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~--~DGSPs~~K~~V~WNP~~~P~~~~~~~~~ 510 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVT--IDGSPSSEKLFVLWNPSAPPTSKSEKSSK 510 (1034)
T ss_pred HHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEE--ecCCCCccceEEEeCCCCCCcchhhhhhH
Confidence 23334444433 246788999999987666555544333333222 3335556666666654322211 1
Q ss_pred ----HHHHHHHhhccCCceEEEEeCCHHHHHHHHHH----HhhcCC----ceEEccCCCCHHHHHHHHHHhhcCCceEEE
Q 006500 358 ----EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKIL----FGLAAL----KAAELHGNLTQAQRLEALELFRKQHVDFLI 425 (643)
Q Consensus 358 ----~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~----L~~~~~----~~~~lh~~~~~~~R~~~l~~F~~g~~~vLv 425 (643)
..++..++. .+-++|-||++++.|+.+-.. |.+.+- .+..+.|+...++|.++....-.|+..-+|
T Consensus 511 i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giI 588 (1034)
T KOG4150|consen 511 VVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGII 588 (1034)
T ss_pred HHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEE
Confidence 112222222 256899999999999877443 333222 244577999999999999999999999999
Q ss_pred ecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEe--ccCcHHHHHHHHHHhcC
Q 006500 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLKAIAKRAGS 491 (643)
Q Consensus 426 aT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~--~~~d~~~l~~i~~~~~~ 491 (643)
+|++++.||||.+++.|++.++|.|...+.|..|||||.+++..++.++ +|-|..++..-..-.++
T Consensus 589 aTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~ 656 (1034)
T KOG4150|consen 589 ATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGS 656 (1034)
T ss_pred ecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCC
Confidence 9999999999999999999999999999999999999988887666555 45565555544443333
No 146
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=2.2e-16 Score=162.96 Aligned_cols=277 Identities=23% Similarity=0.260 Sum_probs=177.4
Q ss_pred eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhc
Q 006500 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~ 244 (643)
++-+|||.||||.- +|+++.... ..++.-|.|.||..+++.++. .|+.|.+++|......... .
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~ak------sGvycGPLrLLA~EV~~r~na----~gipCdL~TGeE~~~~~~~--~ 257 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSAK------SGVYCGPLRLLAHEVYDRLNA----LGIPCDLLTGEERRFVLDN--G 257 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhhc------cceecchHHHHHHHHHHHhhh----cCCCccccccceeeecCCC--C
Confidence 55799999999964 466665433 258999999999999999887 5888888888643221110 1
Q ss_pred CCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHH-HHHHHHCCCCceeEEEeeccchhHHHHHHHh
Q 006500 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI-HELVRLCPKRRQTMLFSATLTEDVDELIKLS 323 (643)
Q Consensus 245 ~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~-~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 323 (643)
..+..+-+|-+..- .-..+++.||||...|.+....-.+ ..++........+ .+ .+.+..+.+..
T Consensus 258 ~~a~hvScTVEM~s---------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHL---CG--epsvldlV~~i 323 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVS---------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHL---CG--EPSVLDLVRKI 323 (700)
T ss_pred CcccceEEEEEEee---------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhc---cC--CchHHHHHHHH
Confidence 23567777755431 1134789999999998864432222 2233222222111 11 12344444443
Q ss_pred cCCCeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCc-eEEccC
Q 006500 324 LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK-AAELHG 402 (643)
Q Consensus 324 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~-~~~lh~ 402 (643)
+...- .....+.+-+..+.. ....+..-+....++-+| .|-|++.+..+...+...|.. +++|+|
T Consensus 324 ~k~TG----------d~vev~~YeRl~pL~---v~~~~~~sl~nlk~GDCv-V~FSkk~I~~~k~kIE~~g~~k~aVIYG 389 (700)
T KOG0953|consen 324 LKMTG----------DDVEVREYERLSPLV---VEETALGSLSNLKPGDCV-VAFSKKDIFTVKKKIEKAGNHKCAVIYG 389 (700)
T ss_pred HhhcC----------CeeEEEeecccCcce---ehhhhhhhhccCCCCCeE-EEeehhhHHHHHHHHHHhcCcceEEEec
Confidence 32110 001111122222211 111222223333333443 355788888888888888765 999999
Q ss_pred CCCHHHHHHHHHHhhc--CCceEEEecccccccCCCCCccEEEecCCCC---------ChhHHHHHHhhcccCCC---cc
Q 006500 403 NLTQAQRLEALELFRK--QHVDFLIATDVAARGLDIIGVQTVINYACPR---------DLTSYVHRVGRTARAGR---EG 468 (643)
Q Consensus 403 ~~~~~~R~~~l~~F~~--g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~---------s~~~y~Qr~GRagR~g~---~g 468 (643)
++++..|...-..|++ ++++||||||+.++|||+ +++.||+|.+-+ +..+..|..|||||.|. .|
T Consensus 390 sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G 468 (700)
T KOG0953|consen 390 SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQG 468 (700)
T ss_pred CCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCc
Confidence 9999999999999998 899999999999999999 899999988653 67788899999999873 47
Q ss_pred EEEEEeccCcHHHHHHHHH
Q 006500 469 YAVTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 469 ~~~~l~~~~d~~~l~~i~~ 487 (643)
.+.+|..+ |...++.+.+
T Consensus 469 ~vTtl~~e-DL~~L~~~l~ 486 (700)
T KOG0953|consen 469 EVTTLHSE-DLKLLKRILK 486 (700)
T ss_pred eEEEeeHh-hHHHHHHHHh
Confidence 77776654 4444444443
No 147
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.69 E-value=2.8e-14 Score=156.89 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=60.9
Q ss_pred CCceEEEEeCCHHHHHHHHHHHhhc-CCceEEccCCCCHHHHHHHHHHhhc----CCceEEEecccccccCCC-------
Q 006500 369 FTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRK----QHVDFLIATDVAARGLDI------- 436 (643)
Q Consensus 369 ~~~~~LIF~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~R~~~l~~F~~----g~~~vLvaT~~~~~GlDi------- 436 (643)
.++++||.+.|+..+..++..|... .+. ..+.|..+ .+..+++.|+. |...||++|+.+.+|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 4679999999999999999998653 233 34455332 45668888887 478899999999999999
Q ss_pred -CC--ccEEEecCCCC
Q 006500 437 -IG--VQTVINYACPR 449 (643)
Q Consensus 437 -~~--v~~VI~~d~p~ 449 (643)
|| +++||+.-+|.
T Consensus 546 ~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 546 DKDNLLTDLIITCAPF 561 (636)
T ss_pred CCCCcccEEEEEeCCC
Confidence 34 89999988884
No 148
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.68 E-value=1.2e-15 Score=138.10 Aligned_cols=144 Identities=45% Similarity=0.570 Sum_probs=110.9
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (643)
+++++.++||+|||.++...+...+... ...+++|++|++.++.|+.+.+..+... +..+..+.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~----~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL----KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc----cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHH
Confidence 4689999999999998766666655431 2346999999999999999999887665 6788888887766655555
Q ss_pred hcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeecc
Q 006500 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (643)
Q Consensus 243 l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~ 312 (643)
.....+|+++|++.+...+.... .....+.++||||+|.+....+...............+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 66789999999999988776542 3456788999999999987655444333445556778899999996
No 149
>COG4889 Predicted helicase [General function prediction only]
Probab=99.66 E-value=1.4e-16 Score=171.00 Aligned_cols=307 Identities=20% Similarity=0.224 Sum_probs=178.9
Q ss_pred CCCCCCCHHHHHHHHHHhcC----CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006500 143 LGYSKPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 218 (643)
..-.+|+|+|+.||..++.| ...=+.+.+|+|||++ .|-+.+++-. .++|+|+|+.+|..|..+....
T Consensus 157 ~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfT-sLkisEala~-------~~iL~LvPSIsLLsQTlrew~~ 228 (1518)
T COG4889 157 KKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFT-SLKISEALAA-------ARILFLVPSISLLSQTLREWTA 228 (1518)
T ss_pred CCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccch-HHHHHHHHhh-------hheEeecchHHHHHHHHHHHhh
Confidence 34568999999999999886 2344566789999998 6777777754 3699999999998887544433
Q ss_pred HhhcCCceEEEEecCCChHHH-----------------------H--HHhcCCCcEEEECchhHHHHHhccCccCCCCee
Q 006500 219 IAQFTDIRCCLVVGGLSTKMQ-----------------------E--TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (643)
Q Consensus 219 l~~~~~~~v~~~~g~~~~~~~-----------------------~--~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~ 273 (643)
-. ...++...+++....... + ..-..+--||++|++.|...-... ..-+..++
T Consensus 229 ~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ-e~G~~~fD 306 (1518)
T COG4889 229 QK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ-EAGLDEFD 306 (1518)
T ss_pred cc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH-HcCCCCcc
Confidence 11 124444444443221110 0 001123468999999987654332 45577899
Q ss_pred EEEEeCCchhccCChHH-HHHHHHHH----CCCCceeEEEeeccchhHHH---HHH---------------------Hhc
Q 006500 274 VLILDEADRLLELGFSA-EIHELVRL----CPKRRQTMLFSATLTEDVDE---LIK---------------------LSL 324 (643)
Q Consensus 274 ~lVvDEah~l~~~g~~~-~~~~i~~~----~~~~~q~i~~SAT~~~~~~~---~~~---------------------~~~ 324 (643)
+||+||||+........ .-..+.+. --+..+.+.+|||+.-.-.. .++ +.+
T Consensus 307 liicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~F 386 (1518)
T COG4889 307 LIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGF 386 (1518)
T ss_pred EEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccH
Confidence 99999999954311100 00000000 00112347788887411111 000 000
Q ss_pred ---------CC--CeEEecCCCCCCCCCceEEEEEEechhhhhHHHHHHH-------Hhh--------------ccCCce
Q 006500 325 ---------TK--PLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS-------LCS--------------KTFTSK 372 (643)
Q Consensus 325 ---------~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~--------------~~~~~~ 372 (643)
.. .+.+.++.. .....+....... .......-... +.+ ..+-.+
T Consensus 387 geAv~rdlLTDYKVmvlaVd~~-~i~~~~~~~~~~~---~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~R 462 (1518)
T COG4889 387 GEAVERDLLTDYKVMVLAVDKE-VIAGVLQSVLSGP---SKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQR 462 (1518)
T ss_pred HHHHHhhhhccceEEEEEechh-hhhhhhhhhccCc---ccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHH
Confidence 00 011111100 0000000000000 00000000000 000 011236
Q ss_pred EEEEeCCHHHHHHHHHHHhh---------------cCCceEEccCCCCHHHHHHHHH---HhhcCCceEEEecccccccC
Q 006500 373 VIIFSGTKQAAHRLKILFGL---------------AALKAAELHGNLTQAQRLEALE---LFRKQHVDFLIATDVAARGL 434 (643)
Q Consensus 373 ~LIF~~s~~~~~~l~~~L~~---------------~~~~~~~lh~~~~~~~R~~~l~---~F~~g~~~vLvaT~~~~~Gl 434 (643)
.|-||.+.++...++..|.. +.+++..++|.|...+|...+. .|....++||--...+++|+
T Consensus 463 AIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGV 542 (1518)
T COG4889 463 AIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGV 542 (1518)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCC
Confidence 78899998888777665532 2345667789999999966554 34567888999999999999
Q ss_pred CCCCccEEEecCCCCChhHHHHHHhhccc
Q 006500 435 DIIGVQTVINYACPRDLTSYVHRVGRTAR 463 (643)
Q Consensus 435 Di~~v~~VI~~d~p~s~~~y~Qr~GRagR 463 (643)
|+|.++.||+|++-.+....+|.+||+.|
T Consensus 543 DVPaLDsViFf~pr~smVDIVQaVGRVMR 571 (1518)
T COG4889 543 DVPALDSVIFFDPRSSMVDIVQAVGRVMR 571 (1518)
T ss_pred CccccceEEEecCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999
No 150
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.64 E-value=9.9e-15 Score=157.95 Aligned_cols=107 Identities=19% Similarity=0.257 Sum_probs=94.6
Q ss_pred cCCceEEEEeCCHHHHHHHHHHHhh----------------------cCCceEEccCCCCHHHHHHHHHHhhcCC----c
Q 006500 368 TFTSKVIIFSGTKQAAHRLKILFGL----------------------AALKAAELHGNLTQAQRLEALELFRKQH----V 421 (643)
Q Consensus 368 ~~~~~~LIF~~s~~~~~~l~~~L~~----------------------~~~~~~~lh~~~~~~~R~~~l~~F~~g~----~ 421 (643)
..+.++|||.+|......+..+|.. .|..+..|+|..+...|......|++-. .
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 3478999999999999999988853 2567889999999999999999999742 3
Q ss_pred eEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEe
Q 006500 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474 (643)
Q Consensus 422 ~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~ 474 (643)
.+||+|.+++.|||+-.++.||+||..|||.-..|.+=|+.|.|+..-||+|-
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 48999999999999999999999999999999999999999999887777663
No 151
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.64 E-value=1.9e-14 Score=170.69 Aligned_cols=107 Identities=22% Similarity=0.338 Sum_probs=97.2
Q ss_pred eEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcC--CceEEEecccccccCCCCCccEEEecCCCC
Q 006500 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ--HVDFLIATDVAARGLDIIGVQTVINYACPR 449 (643)
Q Consensus 372 ~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g--~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~ 449 (643)
++|||++.......+..+|...++.+..++|.++...|...+..|.++ ..-+|++|.+++.|||+..+++||+||+.|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 899999999999999999999999999999999999999999999986 455788889999999999999999999999
Q ss_pred ChhHHHHHHhhcccCCCccEEEEE--eccCc
Q 006500 450 DLTSYVHRVGRTARAGREGYAVTF--VTDND 478 (643)
Q Consensus 450 s~~~y~Qr~GRagR~g~~g~~~~l--~~~~d 478 (643)
|+....|.+.|++|.|++..+.++ +..++
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 999999999999999987665544 45444
No 152
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.64 E-value=6.3e-15 Score=155.82 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=93.1
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhc--CCceE-EEecccccccCCCCCccEEE
Q 006500 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK--QHVDF-LIATDVAARGLDIIGVQTVI 443 (643)
Q Consensus 367 ~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~--g~~~v-LvaT~~~~~GlDi~~v~~VI 443 (643)
.....+++|..+-......++..++..|..+..+||.....+|..+++.|+. |..+| ||+--+++-|||+-+.+|+|
T Consensus 743 ~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHli 822 (901)
T KOG4439|consen 743 TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLI 822 (901)
T ss_pred hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEE
Confidence 3445688888888888888999999999999999999999999999999985 44455 55667788999999999999
Q ss_pred ecCCCCChhHHHHHHhhcccCCCccEEEEE
Q 006500 444 NYACPRDLTSYVHRVGRTARAGREGYAVTF 473 (643)
Q Consensus 444 ~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l 473 (643)
..|+-|||+--.|.+.|..|.|++..++++
T Consensus 823 lvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 823 LVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred EEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 999999999999999999999987666554
No 153
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.62 E-value=3.5e-15 Score=142.10 Aligned_cols=153 Identities=20% Similarity=0.156 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHhc-------CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006500 147 KPTPIQAACIPLALT-------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~-------g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l 219 (643)
+|+++|.+++..++. ++.+++.+|||||||.+++.. +..+.. ++||++|+..|+.|+.+.+..+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~-~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALAL-ILELAR--------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHH-HHHHHC--------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhh-hhcccc--------ceeEecCHHHHHHHHHHHHHHh
Confidence 489999999999884 588999999999999985543 444433 5999999999999999999765
Q ss_pred hhcCCceEE-----------EEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccC----------ccCCCCeeEEEEe
Q 006500 220 AQFTDIRCC-----------LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM----------SVDLDDLAVLILD 278 (643)
Q Consensus 220 ~~~~~~~v~-----------~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~----------~~~l~~i~~lVvD 278 (643)
......... ...................+++++|...|........ ......+.+||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 432111100 0111111122233335568999999999987764311 1234567899999
Q ss_pred CCchhccCChHHHHHHHHHHCCCCceeEEEeeccc
Q 006500 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (643)
Q Consensus 279 Eah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~ 313 (643)
|||++....- +..++. .....+|+|||||.
T Consensus 154 EaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9999764321 344444 55677899999985
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1.8e-12 Score=145.23 Aligned_cols=111 Identities=21% Similarity=0.224 Sum_probs=92.2
Q ss_pred cCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcC-CceEEEecccccccCCCC--------C
Q 006500 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDII--------G 438 (643)
Q Consensus 368 ~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g-~~~vLvaT~~~~~GlDi~--------~ 438 (643)
..+.+|||-+.|....+.|+.+|...|++.-.|++.....+-.-+-+ .| .-.|-|||+.|+||-||. |
T Consensus 626 ~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMAGRGTDIkLg~~V~e~G 702 (1112)
T PRK12901 626 EAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMAGRGTDIKLSPEVKAAG 702 (1112)
T ss_pred HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCcCCCcCcccchhhHHcC
Confidence 35779999999999999999999999999888888655444322222 24 345899999999999996 3
Q ss_pred ccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHH
Q 006500 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (643)
Q Consensus 439 v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~ 481 (643)
==+||-...+.|..-.-|-.||+||-|.+|.+..|+|-.|.-+
T Consensus 703 GL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 703 GLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred CCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 3579999999999999999999999999999999999887533
No 155
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.58 E-value=4.6e-13 Score=153.02 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=79.5
Q ss_pred HHHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCCc-eEEccCCCCHHHHHHHHHHhhcCCc-eEEEecccccccCCCCC
Q 006500 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK-AAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIG 438 (643)
Q Consensus 361 l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~~~~R~~~l~~F~~g~~-~vLvaT~~~~~GlDi~~ 438 (643)
+..+.... ++++|||++|+..+..+...|...... ....+|..+. ..+++.|..+.- .++|+|..+++|+|+|+
T Consensus 471 i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g 546 (654)
T COG1199 471 LREILKAS-PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFWEGVDFPG 546 (654)
T ss_pred HHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeeccccCcccCCC
Confidence 33344444 559999999999999999999876653 3444554443 478888887655 89999999999999998
Q ss_pred --ccEEEecCCCCC------------------------------hhHHHHHHhhcccCCCc-cEEEEE
Q 006500 439 --VQTVINYACPRD------------------------------LTSYVHRVGRTARAGRE-GYAVTF 473 (643)
Q Consensus 439 --v~~VI~~d~p~s------------------------------~~~y~Qr~GRagR~g~~-g~~~~l 473 (643)
++.||+..+|.- .....|.+||+-|.-.. |.++++
T Consensus 547 ~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 547 DALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred CCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 588998888752 23445999999994433 444443
No 156
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.57 E-value=6.8e-15 Score=120.11 Aligned_cols=81 Identities=47% Similarity=0.724 Sum_probs=77.3
Q ss_pred HHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccC
Q 006500 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464 (643)
Q Consensus 385 ~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~ 464 (643)
.+..+|...++.+..+||.++..+|..++..|+.|...|||+|+++++|+|+|.+++||++++|+++..|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 006500 465 G 465 (643)
Q Consensus 465 g 465 (643)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 157
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.55 E-value=2.4e-13 Score=151.80 Aligned_cols=315 Identities=16% Similarity=0.220 Sum_probs=210.8
Q ss_pred CCCHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHH-HHHHHHHHhhcCC
Q 006500 147 KPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ-VHSMIEKIAQFTD 224 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q-~~~~~~~l~~~~~ 224 (643)
...|+|.++.+.+.+. .++++++|+|||||.+.-++++. ..+..++++++|.-+.+.. ...+-++|....|
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------CccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 3478999998888774 57889999999999987776664 2345689999999998884 4566677777789
Q ss_pred ceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC------hHHHHHHHHHH
Q 006500 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG------FSAEIHELVRL 298 (643)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g------~~~~~~~i~~~ 298 (643)
.++..+.|..+.... +....+|+|+||+++-.+ + ....+++.|+||+|.+.... ..+ +..+-..
T Consensus 1216 ~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q 1285 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQ 1285 (1674)
T ss_pred ceEEecCCccccchH---HhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHH
Confidence 999988888765433 455679999999997443 2 35678899999999876321 112 4455555
Q ss_pred CCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEEEEechhhhhHH-----HHHHHHhh-ccCCce
Q 006500 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE-----AVLLSLCS-KTFTSK 372 (643)
Q Consensus 299 ~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~-~~~~~~ 372 (643)
+-+..+++.+|..+++. ..+ ..+...-.+.+. ...++..+.-.+.-+....-.... ..+..+.. ...+.+
T Consensus 1286 ~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~-p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~ 1361 (1674)
T KOG0951|consen 1286 LEKKIRVVALSSSLANA-RDL--IGASSSGVFNFS-PSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKP 1361 (1674)
T ss_pred HHhheeEEEeehhhccc-hhh--ccccccceeecC-cccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 66778889999887643 222 222222223332 233555554433333221111111 11111221 234678
Q ss_pred EEEEeCCHHHHHHHHHHHhh----------------------cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccc
Q 006500 373 VIIFSGTKQAAHRLKILFGL----------------------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (643)
Q Consensus 373 ~LIF~~s~~~~~~l~~~L~~----------------------~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~ 430 (643)
.+||+++++.+..++.-|-. ..++.+.=|.+|+..+..-+...|..|.+.|+|...-
T Consensus 1362 ~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~- 1440 (1674)
T KOG0951|consen 1362 AIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD- 1440 (1674)
T ss_pred eEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-
Confidence 99999999998877543311 1233333499999999999999999999999888766
Q ss_pred cccCCCCCccEEE----ecC------CCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHH
Q 006500 431 ARGLDIIGVQTVI----NYA------CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486 (643)
Q Consensus 431 ~~GlDi~~v~~VI----~~d------~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~ 486 (643)
..|+-...--+|+ .|| .+.+.....|++|+|.| .|.|++++......+++...
T Consensus 1441 ~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1441 CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhc
Confidence 7777654333333 233 34467889999999998 56899999988887776653
No 158
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=2.2e-12 Score=147.61 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=60.5
Q ss_pred CCCCCCCHHHHHHHHHHh----cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006500 143 LGYSKPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 218 (643)
+.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.|+|......+ ..+++++++.|..-..|+.+++++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~---~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP---EVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc---ccccEEEEcccchHHHHHHHHHHh
Confidence 457777999988876554 4789999999999999998999988765433 235799999999988999999988
Q ss_pred Hh
Q 006500 219 IA 220 (643)
Q Consensus 219 l~ 220 (643)
+.
T Consensus 83 ~~ 84 (705)
T TIGR00604 83 LM 84 (705)
T ss_pred hh
Confidence 53
No 159
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.52 E-value=1.5e-11 Score=139.82 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=59.9
Q ss_pred CCceEEEEeCCHHHHHHHHHHHhhc-CCceEEccCCCCHHHHHHHHHHhh----cCCceEEEecccccccCCCCC--ccE
Q 006500 369 FTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFR----KQHVDFLIATDVAARGLDIIG--VQT 441 (643)
Q Consensus 369 ~~~~~LIF~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~R~~~l~~F~----~g~~~vLvaT~~~~~GlDi~~--v~~ 441 (643)
.++++|||++|+...+.+...|... +.. ...+|. ..+..+++.|+ .|...||++|..+.+|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3556999999999999999988643 333 344553 24667786676 467789999999999999998 789
Q ss_pred EEecCCCC
Q 006500 442 VINYACPR 449 (643)
Q Consensus 442 VI~~d~p~ 449 (643)
||+..+|.
T Consensus 609 vII~kLPF 616 (697)
T PRK11747 609 VIITKIPF 616 (697)
T ss_pred EEEEcCCC
Confidence 99988774
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.44 E-value=1.6e-11 Score=137.19 Aligned_cols=136 Identities=16% Similarity=0.197 Sum_probs=92.8
Q ss_pred cCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHH----HHhc
Q 006500 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE----TALR 244 (643)
Q Consensus 169 a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~----~~l~ 244 (643)
+.+|||||.+|+ .++...+.. +..+|||+|...|..|+.+.|+..+ .+..+..++++.+..... ....
T Consensus 167 ~~~GSGKTevyl-~~i~~~l~~-----Gk~vLvLvPEi~lt~q~~~rl~~~f--~~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 167 ALPGEDWARRLA-AAAAATLRA-----GRGALVVVPDQRDVDRLEAALRALL--GAGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred cCCCCcHHHHHH-HHHHHHHHc-----CCeEEEEecchhhHHHHHHHHHHHc--CCCcEEEECCCCCHHHHHHHHHHHhC
Confidence 346999999974 455555443 2359999999999999999998754 236688899988766443 2334
Q ss_pred CCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc--cC-C--hHHHHHHHHHHCCCCceeEEEeeccchhHHHH
Q 006500 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL--EL-G--FSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 319 (643)
Q Consensus 245 ~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~--~~-g--~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~ 319 (643)
+...|||+|-..+ ...+.++++|||||=|.-. +. + |...-..+.+....+..+|+-|||++-+...+
T Consensus 239 G~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 239 GQARVVVGTRSAV--------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCCcEEEEcceeE--------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 5689999994333 3357889999999999643 11 1 22222233334445678999999998665544
Q ss_pred H
Q 006500 320 I 320 (643)
Q Consensus 320 ~ 320 (643)
.
T Consensus 311 ~ 311 (665)
T PRK14873 311 V 311 (665)
T ss_pred H
Confidence 3
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.39 E-value=3.7e-11 Score=132.29 Aligned_cols=288 Identities=17% Similarity=0.222 Sum_probs=177.3
Q ss_pred eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhc
Q 006500 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~ 244 (643)
.++.+|+|||||.+ ++..|...+.. +..++|+|..+++|+.++...++... ..++....-.++. .+.
T Consensus 52 ~vVRSpMGTGKTta-Li~wLk~~l~~----~~~~VLvVShRrSL~~sL~~rf~~~~-l~gFv~Y~d~~~~-------~i~ 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTA-LIRWLKDALKN----PDKSVLVVSHRRSLTKSLAERFKKAG-LSGFVNYLDSDDY-------IID 118 (824)
T ss_pred EEEECCCCCCcHHH-HHHHHHHhccC----CCCeEEEEEhHHHHHHHHHHHHhhcC-CCcceeeeccccc-------ccc
Confidence 56999999999987 56666655432 23469999999999999988887521 1122211111110 011
Q ss_pred -CCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHH-------HHHHHHCCCCceeEEEeeccchhH
Q 006500 245 -SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI-------HELVRLCPKRRQTMLFSATLTEDV 316 (643)
Q Consensus 245 -~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~-------~~i~~~~~~~~q~i~~SAT~~~~~ 316 (643)
...+-+++..+.|.... ...+.++++|||||+-.+++.-|...+ ..+...+.....+|++-||+....
T Consensus 119 ~~~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred ccccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 13567788877776543 224667999999999987764332222 223344556678999999999999
Q ss_pred HHHHHHhcCC-CeEEecCCCCCCCCCceEEEEEEech---------------------------------hhhhHHHHHH
Q 006500 317 DELIKLSLTK-PLRLSADPSAKRPSTLTEEVVRIRRM---------------------------------REVNQEAVLL 362 (643)
Q Consensus 317 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~ 362 (643)
.+++...... ++.+... ....+.-........+.. ..........
T Consensus 195 vdFl~~~Rp~~~i~vI~n-~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVN-TYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHhCCCCcEEEEEe-eeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 8888775433 2222221 111110000000000000 0000111122
Q ss_pred HHhh-ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCc--
Q 006500 363 SLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV-- 439 (643)
Q Consensus 363 ~~~~-~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v-- 439 (643)
.+.. -..+.++-||+.|...++.++.+......++..++|.-+..+. +.| ++++|+++|.+..-|+++...
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhhc
Confidence 2222 2235688899999999999999999999999999887666532 223 579999999999999999654
Q ss_pred cEEEecCCCC----ChhHHHHHHhhcccCCCccEEEEEeccC
Q 006500 440 QTVINYACPR----DLTSYVHRVGRTARAGREGYAVTFVTDN 477 (643)
Q Consensus 440 ~~VI~~d~p~----s~~~y~Qr~GRagR~g~~g~~~~l~~~~ 477 (643)
+-|+-|=-|. +..+..|++||+-... ....+++++..
T Consensus 348 ~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 348 DSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 4466553332 3446789999975544 55666666543
No 162
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.38 E-value=3.5e-11 Score=135.71 Aligned_cols=311 Identities=20% Similarity=0.178 Sum_probs=179.2
Q ss_pred CCHHHHHHHHHHhc--------CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006500 148 PTPIQAACIPLALT--------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (643)
Q Consensus 148 ~~~~Q~~~i~~~l~--------g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l 219 (643)
-+.+|-+|...+.. |--+|-.|.||+|||++ =.-|+..+-.. ..+.|+.|-.-.|+|..|.-+.+++-
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~---~~g~RfsiALGLRTLTLQTGda~r~r 484 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDD---KQGARFAIALGLRSLTLQTGHALKTR 484 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCC---CCCceEEEEccccceeccchHHHHHh
Confidence 45689888887765 23466789999999987 55566555322 34668899999999999998888876
Q ss_pred hhcCCceEEEEecCCChHHHHH-------------------------------------------Hhc--------CCCc
Q 006500 220 AQFTDIRCCLVVGGLSTKMQET-------------------------------------------ALR--------SMPD 248 (643)
Q Consensus 220 ~~~~~~~v~~~~g~~~~~~~~~-------------------------------------------~l~--------~~~~ 248 (643)
.....-...+++|+.....-.. .+. -...
T Consensus 485 L~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 485 LNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred cCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 6655556666676643221100 000 0157
Q ss_pred EEEECchhHHHHHhcc--CccCCC----CeeEEEEeCCchhccCChHHHHHHHHHHC-CCCceeEEEeeccchhHHHHHH
Q 006500 249 IVVATPGRMIDHLRNS--MSVDLD----DLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIK 321 (643)
Q Consensus 249 Ivv~Tp~~L~~~l~~~--~~~~l~----~i~~lVvDEah~l~~~g~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~ 321 (643)
|+|+|+..++...... ....+. .-+.|||||+|..-... ...+..++..+ .-...++++|||+|+.+...+.
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 9999999998776321 111111 12589999999754322 12233333321 1246789999999987655422
Q ss_pred -----------HhcCC---CeEEe---cCCCCC----------------------------CCCCceEEEEEEechhhh-
Q 006500 322 -----------LSLTK---PLRLS---ADPSAK----------------------------RPSTLTEEVVRIRRMREV- 355 (643)
Q Consensus 322 -----------~~~~~---p~~~~---~~~~~~----------------------------~~~~~~~~~~~~~~~~~~- 355 (643)
..... |+.+. ++.... .+..-.-.++.+......
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 12221 21111 000000 000000011111111100
Q ss_pred ------hHHHH---HHHHhh----cc--CCce---EEEEeCCHHHHHHHHHHHhhc------CCceEEccCCCCHHHHHH
Q 006500 356 ------NQEAV---LLSLCS----KT--FTSK---VIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLE 411 (643)
Q Consensus 356 ------~~~~~---l~~~~~----~~--~~~~---~LIF~~s~~~~~~l~~~L~~~------~~~~~~lh~~~~~~~R~~ 411 (643)
....+ ...++. .. .+.+ .||-+.++..+..++..|-.. .+.+.++|+......|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 00001 111111 11 1222 366677777777776666432 356888999988777766
Q ss_pred HHHHh----------------------hc----CCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCC
Q 006500 412 ALELF----------------------RK----QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465 (643)
Q Consensus 412 ~l~~F----------------------~~----g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g 465 (643)
+.+.. .+ +...|+|+|.+.+-|+|+ +.+.+|- -|.+..+.+||+||+.|.|
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccc
Confidence 55442 11 356799999999999998 5666553 3557899999999999966
Q ss_pred C
Q 006500 466 R 466 (643)
Q Consensus 466 ~ 466 (643)
.
T Consensus 881 ~ 881 (1110)
T TIGR02562 881 L 881 (1110)
T ss_pred c
Confidence 3
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.36 E-value=3.3e-12 Score=131.68 Aligned_cols=156 Identities=21% Similarity=0.173 Sum_probs=96.8
Q ss_pred HHHHHHHHHh-------------cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006500 151 IQAACIPLAL-------------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (643)
Q Consensus 151 ~Q~~~i~~~l-------------~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 217 (643)
+|..++.+++ ..+.+|++..+|+|||++ .+.++..+...........+|||||. .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~-~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTIT-AIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHH-HHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhh-hhhhhhhhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 5888887773 346899999999999988 45555555444332222359999999 77789999999
Q ss_pred HHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHH-----HHHhccCccCCCCeeEEEEeCCchhccCChHHHH
Q 006500 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI-----DHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292 (643)
Q Consensus 218 ~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~-----~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~ 292 (643)
.++....+++..+.|...............+|+|+|+..+. .... .+.--.+++|||||+|.+-+.. ...
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~---~l~~~~~~~vIvDEaH~~k~~~--s~~ 153 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE---DLKQIKWDRVIVDEAHRLKNKD--SKR 153 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH---HHHTSEEEEEEETTGGGGTTTT--SHH
T ss_pred cccccccccccccccccccccccccccccceeeecccccccccccccccc---ccccccceeEEEeccccccccc--ccc
Confidence 99865567777777665122222223345799999999998 2111 1122349999999999996432 333
Q ss_pred HHHHHHCCCCceeEEEeeccch
Q 006500 293 HELVRLCPKRRQTMLFSATLTE 314 (643)
Q Consensus 293 ~~i~~~~~~~~q~i~~SAT~~~ 314 (643)
...+..+. ....+++|||+..
T Consensus 154 ~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 154 YKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccccc-cceEEeecccccc
Confidence 33444443 6677999999754
No 164
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.26 E-value=4.1e-10 Score=120.49 Aligned_cols=118 Identities=21% Similarity=0.268 Sum_probs=100.5
Q ss_pred CceEEEEeCCHHHHHHHHHHHhhc------------------CCceEEccCCCCHHHHHHHHHHhhcC---CceEEEecc
Q 006500 370 TSKVIIFSGTKQAAHRLKILFGLA------------------ALKAAELHGNLTQAQRLEALELFRKQ---HVDFLIATD 428 (643)
Q Consensus 370 ~~~~LIF~~s~~~~~~l~~~L~~~------------------~~~~~~lh~~~~~~~R~~~l~~F~~g---~~~vLvaT~ 428 (643)
+.++|||..+......+..+|... +.+.+.+.|.++..+|.+++.+|++. ..-||++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 568999999999999999999653 24567899999999999999999863 246899999
Q ss_pred cccccCCCCCccEEEecCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHH
Q 006500 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (643)
Q Consensus 429 ~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~ 487 (643)
+...||++-+.+.+|.||.-|++.--.|.+.|+.|-|++..|++|---.|..+-+.|..
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIyd 857 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYD 857 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999888888766666555555443
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.21 E-value=8.6e-10 Score=122.51 Aligned_cols=314 Identities=19% Similarity=0.187 Sum_probs=190.5
Q ss_pred CCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceE
Q 006500 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227 (643)
Q Consensus 148 ~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v 227 (643)
|..+| .+-.+.....-++-+.||-|||++..+|+.-..+... .+.+++..--||..-.+++..+..+.|+++
T Consensus 81 ~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk------gVhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 81 HFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK------GVHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred hhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC------CcEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 44444 4555556667889999999999999999875554332 378888888999999999999999999999
Q ss_pred EEEecCCChHHHHHHhcCCCcEEEECchhH-HHHHhcc-----CccCCCCeeEEEEeCCchhcc---------CC-----
Q 006500 228 CLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNS-----MSVDLDDLAVLILDEADRLLE---------LG----- 287 (643)
Q Consensus 228 ~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L-~~~l~~~-----~~~~l~~i~~lVvDEah~l~~---------~g----- 287 (643)
++...+.+....... ..+||.++|...| .++|+.. ...-...+.+.|+||+|.++= .|
T Consensus 153 G~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~ 230 (822)
T COG0653 153 GVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDS 230 (822)
T ss_pred eeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccC
Confidence 999999877655543 4589999997654 2222221 112244578999999998541 11
Q ss_pred --hHHHHHHHHHHCCCC--------ceeEEEe------------------------------------------------
Q 006500 288 --FSAEIHELVRLCPKR--------RQTMLFS------------------------------------------------ 309 (643)
Q Consensus 288 --~~~~~~~i~~~~~~~--------~q~i~~S------------------------------------------------ 309 (643)
+...+..+...+... .+.|.||
T Consensus 231 ~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd 310 (822)
T COG0653 231 SELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRD 310 (822)
T ss_pred chHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEec
Confidence 233333333222211 0111111
Q ss_pred -------------------------------------------------------------eccchhHHHHHHHhcCCCe
Q 006500 310 -------------------------------------------------------------ATLTEDVDELIKLSLTKPL 328 (643)
Q Consensus 310 -------------------------------------------------------------AT~~~~~~~~~~~~~~~p~ 328 (643)
.|...+..++...+....+
T Consensus 311 ~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv 390 (822)
T COG0653 311 GEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVV 390 (822)
T ss_pred CeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCcee
Confidence 1111111111111111001
Q ss_pred EEecCCCCCCCCCceEEEEEEechhhhhHHH-HHHHHhh-ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCH
Q 006500 329 RLSADPSAKRPSTLTEEVVRIRRMREVNQEA-VLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406 (643)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~-~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~ 406 (643)
.+.......+.. ..+.+. .....+.. ++..+.. ...+.++||-+.++...+.+...|...|++...|+..-..
T Consensus 391 ~iPTnrp~~R~D-~~D~vy----~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~ 465 (822)
T COG0653 391 VIPTNRPIIRLD-EPDLVY----KTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA 465 (822)
T ss_pred eccCCCcccCCC-Cccccc----cchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH
Confidence 000000000000 000000 01122222 2223322 3457899999999999999999999999998888886664
Q ss_pred HHHHHHHHHhhcCC-ceEEEecccccccCCCCCcc-----------EEEecCCCCChhHHHHHHhhcccCCCccEEEEEe
Q 006500 407 AQRLEALELFRKQH-VDFLIATDVAARGLDIIGVQ-----------TVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474 (643)
Q Consensus 407 ~~R~~~l~~F~~g~-~~vLvaT~~~~~GlDi~~v~-----------~VI~~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~ 474 (643)
.+-. +-.+ .|+ --|-|||+.|+||-||.--. +||-..--.|..---|--||+||.|-+|.+..|+
T Consensus 466 ~EA~--Iia~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~l 542 (822)
T COG0653 466 REAE--IIAQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYL 542 (822)
T ss_pred HHHH--HHhh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhh
Confidence 3322 2222 243 34889999999999994322 4565555556666669999999999999999988
Q ss_pred ccCcH
Q 006500 475 TDNDR 479 (643)
Q Consensus 475 ~~~d~ 479 (643)
+-.|.
T Consensus 543 SleD~ 547 (822)
T COG0653 543 SLEDD 547 (822)
T ss_pred hhHHH
Confidence 87664
No 166
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.19 E-value=7.1e-11 Score=128.32 Aligned_cols=317 Identities=17% Similarity=0.205 Sum_probs=193.9
Q ss_pred HHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH-hhcCCceEEEEe
Q 006500 153 AACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDIRCCLVV 231 (643)
Q Consensus 153 ~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l-~~~~~~~v~~~~ 231 (643)
..++..+..+.-+++.+.||+|||..+...+|+.++......-. -+.+..|+|..+.-+++.+.+- +...+-.|+.-.
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~-na~v~qprrisaisiaerva~er~e~~g~tvgy~v 462 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASF-NAVVSQPRRISAISLAERVANERGEEVGETCGYNV 462 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccc-cceeccccccchHHHHHHHHHhhHHhhcccccccc
Confidence 34444455567788999999999999999999999877653222 3788899998888776655432 111122222111
Q ss_pred cCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc-cCChHHHHHHHHHHCCCCceeEEEee
Q 006500 232 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSA 310 (643)
Q Consensus 232 g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~-~~g~~~~~~~i~~~~~~~~q~i~~SA 310 (643)
.. ....-..---|+++|-+.|+..+.+. +..+.++|+||.|..- +..|...+..=+....+...++++||
T Consensus 463 Rf-----~Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsa 533 (1282)
T KOG0921|consen 463 RF-----DSATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSA 533 (1282)
T ss_pred cc-----cccccccccceeeeccchhhhhhhhc----ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhc
Confidence 11 11111122368999999999888764 4567899999999754 33355444443444444555666666
Q ss_pred ccchhHHHH--------------------HHHhcCCCeEEecCCCCCCCC-CceEE------------EEEEec------
Q 006500 311 TLTEDVDEL--------------------IKLSLTKPLRLSADPSAKRPS-TLTEE------------VVRIRR------ 351 (643)
Q Consensus 311 T~~~~~~~~--------------------~~~~~~~p~~~~~~~~~~~~~-~~~~~------------~~~~~~------ 351 (643)
|+..+.... ....+..+............. ...+. -..+..
T Consensus 534 tIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~ 613 (1282)
T KOG0921|consen 534 TIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNEST 613 (1282)
T ss_pred ccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchh
Confidence 665332211 111111111000000000000 00000 000000
Q ss_pred -------hhhh----hHHHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhc-------CCceEEccCCCCHHHHHHHH
Q 006500 352 -------MREV----NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-------ALKAAELHGNLTQAQRLEAL 413 (643)
Q Consensus 352 -------~~~~----~~~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~-------~~~~~~lh~~~~~~~R~~~l 413 (643)
.... .-...+..+......+-++||.+.-.....|..+|... .+..+.+|+.+...++.++.
T Consensus 614 ~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf 693 (1282)
T KOG0921|consen 614 RTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVF 693 (1282)
T ss_pred hhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhcc
Confidence 0000 00112222334455678999999999888888877543 46788999999999999999
Q ss_pred HHhhcCCceEEEecccccccCCCCCccEEEecCCCC------------------ChhHHHHHHhhcccCCCccEEEEEec
Q 006500 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------------DLTSYVHRVGRTARAGREGYAVTFVT 475 (643)
Q Consensus 414 ~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~------------------s~~~y~Qr~GRagR~g~~g~~~~l~~ 475 (643)
+....|..+++++|+++...+.+.++.+||+-+.-. +....+||.||+||. ++|.|+.+++
T Consensus 694 ~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 694 EPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred CcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 999999999999999999999999988888533221 455678999999994 6899999887
Q ss_pred cCcHH
Q 006500 476 DNDRS 480 (643)
Q Consensus 476 ~~d~~ 480 (643)
..-..
T Consensus 773 ~arF~ 777 (1282)
T KOG0921|consen 773 RARFE 777 (1282)
T ss_pred HHHHH
Confidence 64433
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.19 E-value=1.1e-10 Score=102.56 Aligned_cols=135 Identities=21% Similarity=0.210 Sum_probs=80.9
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (643)
|+-.++-..+|+|||.-.+--++...+.+ +.++|||.|||.++..+.+.++. .++++. ..-...
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-----~~rvLvL~PTRvva~em~~aL~~----~~~~~~--t~~~~~----- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-----RLRVLVLAPTRVVAEEMYEALKG----LPVRFH--TNARMR----- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-----T--EEEEESSHHHHHHHHHHTTT----SSEEEE--STTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-----cCeEEEecccHHHHHHHHHHHhc----CCcccC--ceeeec-----
Confidence 44467889999999986444444444443 34699999999999888877764 233332 111110
Q ss_pred HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC--hHHHHHHHHHHCCCCceeEEEeeccchhH
Q 006500 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (643)
Q Consensus 242 ~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g--~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 316 (643)
...++.-|-++|...+...+.+ ...+.+|+++|+||||..-.+. ++..+..+-.. ....+|++|||+|...
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~--g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES--GEAKVIFMTATPPGSE 140 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT--TS-EEEEEESS-TT--
T ss_pred cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHhhhc--cCeeEEEEeCCCCCCC
Confidence 1235567889999998887776 3457899999999999754322 33333333222 2357899999998644
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.12 E-value=9e-10 Score=112.13 Aligned_cols=76 Identities=28% Similarity=0.291 Sum_probs=60.1
Q ss_pred CCCCCCCHHHHH----HHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006500 143 LGYSKPTPIQAA----CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (643)
Q Consensus 143 ~g~~~~~~~Q~~----~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 218 (643)
+.|. |+|.|.+ ++..+..|.++++.+|||+|||++|++|++..+...+....+.+++|+++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3454 6999999 4555666899999999999999999999998776544322344799999999998888777766
Q ss_pred H
Q 006500 219 I 219 (643)
Q Consensus 219 l 219 (643)
+
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 5
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.12 E-value=9e-10 Score=112.13 Aligned_cols=76 Identities=28% Similarity=0.291 Sum_probs=60.1
Q ss_pred CCCCCCCHHHHH----HHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006500 143 LGYSKPTPIQAA----CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (643)
Q Consensus 143 ~g~~~~~~~Q~~----~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 218 (643)
+.|. |+|.|.+ ++..+..|.++++.+|||+|||++|++|++..+...+....+.+++|+++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3454 6999999 4555666899999999999999999999998776544322344799999999998888777766
Q ss_pred H
Q 006500 219 I 219 (643)
Q Consensus 219 l 219 (643)
+
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 5
No 170
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.11 E-value=3.6e-08 Score=115.33 Aligned_cols=299 Identities=19% Similarity=0.171 Sum_probs=164.1
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (643)
+..+|+--||||||++ ++.+.+.+... ...+.|+||+-++.|-.|+.+.+..+........ ...+...-...
T Consensus 274 ~~G~IWHtqGSGKTlT-m~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~ 345 (962)
T COG0610 274 KGGYIWHTQGSGKTLT-MFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKEL 345 (962)
T ss_pred CceEEEeecCCchHHH-HHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHH
Confidence 5699999999999987 55555555444 3456899999999999999999999865432211 33344444445
Q ss_pred hcCC-CcEEEECchhHHHHHhccCcc-CCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHH-
Q 006500 243 LRSM-PDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL- 319 (643)
Q Consensus 243 l~~~-~~Ivv~Tp~~L~~~l~~~~~~-~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~- 319 (643)
+... ..|+|||-+.|-..+...... .-..--+||+|||||-- .|+.. ..+...++ +...++||+||--.-...
T Consensus 346 l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ-~G~~~--~~~~~~~~-~a~~~gFTGTPi~~~d~~t 421 (962)
T COG0610 346 LEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ-YGELA--KLLKKALK-KAIFIGFTGTPIFKEDKDT 421 (962)
T ss_pred HhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc-ccHHH--HHHHHHhc-cceEEEeeCCccccccccc
Confidence 5533 489999999998777553111 12223379999999843 23222 22233333 367899999986332222
Q ss_pred HHHhcCCCeEEecCCCCCCCCCceEEEEEEe----chhhhhH--------------------------------------
Q 006500 320 IKLSLTKPLRLSADPSAKRPSTLTEEVVRIR----RMREVNQ-------------------------------------- 357 (643)
Q Consensus 320 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------------------------------- 357 (643)
....+...+.............+.......+ .......
T Consensus 422 t~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~ 501 (962)
T COG0610 422 TKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRL 501 (962)
T ss_pred hhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHH
Confidence 1222222221111111101000000000000 0000000
Q ss_pred ----HHHHHHHhh-ccCCceEEEEeCCHHHHHHHHHHHhhcC---------------------CceEEc--cCCCCHHHH
Q 006500 358 ----EAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAA---------------------LKAAEL--HGNLTQAQR 409 (643)
Q Consensus 358 ----~~~l~~~~~-~~~~~~~LIF~~s~~~~~~l~~~L~~~~---------------------~~~~~l--h~~~~~~~R 409 (643)
..+...+.. ...+.++++.+.++..+..+.+...... ...... |... ...+
T Consensus 502 ~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~ 580 (962)
T COG0610 502 IRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEK 580 (962)
T ss_pred HHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHH
Confidence 000011112 3345677777777774444443322110 000000 1111 1223
Q ss_pred HHHHHH--hhcCCceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccC--C-C-ccEEEEEec
Q 006500 410 LEALEL--FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA--G-R-EGYAVTFVT 475 (643)
Q Consensus 410 ~~~l~~--F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~--g-~-~g~~~~l~~ 475 (643)
.....+ ......++||.++.+-+|+|-|.++++. .|-|--....+|.+-||.|. + + .|.++-|+.
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 333444 3345788999999999999999988665 67777888999999999993 3 1 244544444
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.85 E-value=6.9e-08 Score=95.79 Aligned_cols=131 Identities=26% Similarity=0.322 Sum_probs=97.1
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
.|+ .|++.|.-++-.+..|+ |+...||-|||++..+|+.-..+. +..|=|++.+..||.+=++++..+..+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~------G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ------GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT------SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh------cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 455 58999999887776665 999999999999888887766654 234889999999999999999999999
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhHH-HHHhccC----cc-CCCCeeEEEEeCCchhc
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI-DHLRNSM----SV-DLDDLAVLILDEADRLL 284 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~-~~l~~~~----~~-~l~~i~~lVvDEah~l~ 284 (643)
.|++++.++++.+....... ..++|+++|...|. ++|++.. .. ....+.++||||||.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999998876544333 34689999998764 3444321 11 25678899999999876
No 172
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.75 E-value=4.7e-08 Score=108.91 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=91.0
Q ss_pred eEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCC-ceE-EEecccccccCCCCCccEEEecCCCC
Q 006500 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH-VDF-LIATDVAARGLDIIGVQTVINYACPR 449 (643)
Q Consensus 372 ~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~-~~v-LvaT~~~~~GlDi~~v~~VI~~d~p~ 449 (643)
+++||++-...+..+...|...++....+.|.|+...|.+.+..|..+. ..| |++..+++-||++..+.+|+..|+=|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8999999999999999999999999999999999999999999999653 334 56788899999999999999999999
Q ss_pred ChhHHHHHHhhcccCCCccEEEE
Q 006500 450 DLTSYVHRVGRTARAGREGYAVT 472 (643)
Q Consensus 450 s~~~y~Qr~GRagR~g~~g~~~~ 472 (643)
||..--|.+-|++|.|+.-.+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999997655544
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.46 E-value=3.4e-06 Score=96.34 Aligned_cols=69 Identities=20% Similarity=0.122 Sum_probs=47.7
Q ss_pred cCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccc
Q 006500 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (643)
Q Consensus 244 ~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~ 313 (643)
.....|+++||..|..-|... .+++..+..|||||||++....-...+..+.+...+..-+.+|||.+.
T Consensus 5 y~~ggi~~~T~rIl~~DlL~~-ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLTG-IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred hhcCCEEEEechhhHhHHhcC-CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 345689999999997766554 688999999999999998754444444444444444444555555543
No 174
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.42 E-value=1.8e-07 Score=104.56 Aligned_cols=225 Identities=20% Similarity=0.266 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 006500 148 PTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (643)
Q Consensus 148 ~~~~Q~~~i~~~l~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (643)
+.|+|.+.+..+.. ..++++.+|||+|||++|-+.++..+...+ ..++++++|...|+..-.+.........|++
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p----~~kvvyIap~kalvker~~Dw~~r~~~~g~k 1003 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP----GSKVVYIAPDKALVKERSDDWSKRDELPGIK 1003 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC----CccEEEEcCCchhhcccccchhhhcccCCce
Confidence 44556555443333 367889999999999999999887776543 3579999999999775544444433445888
Q ss_pred EEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCcc-CCCCeeEEEEeCCchhccCChHHHHHH-------HHHH
Q 006500 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLELGFSAEIHE-------LVRL 298 (643)
Q Consensus 227 v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~-~l~~i~~lVvDEah~l~~~g~~~~~~~-------i~~~ 298 (643)
+.-+.|....... -...++|+|+||++...+.+++... -+.+++.+|+||.|.+... ..+.+.. +-..
T Consensus 1004 ~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~ 1079 (1230)
T KOG0952|consen 1004 VIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQ 1079 (1230)
T ss_pred eEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccc
Confidence 9998888766522 1245799999999988777644332 4778999999999987643 1111111 1122
Q ss_pred CCCCceeEEEeeccchhHHHHHHHhcCCCeEEecCCCCCCCCCceEEEE------EEechhhhhHHHHHHHHhhccCCce
Q 006500 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV------RIRRMREVNQEAVLLSLCSKTFTSK 372 (643)
Q Consensus 299 ~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~ 372 (643)
.++.++.+++|--+. ....+....-.++. ..+. ...+|..+...+. .+.......+ ..+..+....+..+
T Consensus 1080 t~~~vr~~glsta~~-na~dla~wl~~~~~-~nf~-~svrpvp~~~~i~gfp~~~~cprm~smnk-pa~qaik~~sp~~p 1155 (1230)
T KOG0952|consen 1080 TEEPVRYLGLSTALA-NANDLADWLNIKDM-YNFR-PSVRPVPLEVHIDGFPGQHYCPRMMSMNK-PAFQAIKTHSPIKP 1155 (1230)
T ss_pred cCcchhhhhHhhhhh-ccHHHHHHhCCCCc-CCCC-cccccCCceEeecCCCchhcchhhhhccc-HHHHHHhcCCCCCc
Confidence 334455566654332 22223222211221 1111 1122322222221 2222222222 33444555667789
Q ss_pred EEEEeCCHHHHH
Q 006500 373 VIIFSGTKQAAH 384 (643)
Q Consensus 373 ~LIF~~s~~~~~ 384 (643)
+|||+.++....
T Consensus 1156 ~lifv~srrqtr 1167 (1230)
T KOG0952|consen 1156 VLIFVSSRRQTR 1167 (1230)
T ss_pred eEEEeecccccc
Confidence 999998776443
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.42 E-value=1.7e-05 Score=87.48 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=57.2
Q ss_pred CceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccC--CCccE-----------EEEEeccCcHHHHHHHH
Q 006500 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGY-----------AVTFVTDNDRSLLKAIA 486 (643)
Q Consensus 420 ~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~--g~~g~-----------~~~l~~~~d~~~l~~i~ 486 (643)
..++|++-.++.+|+|=|+|=+++-+....|..+=+|-+||.-|. .+.|. -.++++..+..+++.+.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 578999999999999999999999999999999999999999993 33443 23456677777887777
Q ss_pred HHh
Q 006500 487 KRA 489 (643)
Q Consensus 487 ~~~ 489 (643)
+..
T Consensus 563 kEI 565 (985)
T COG3587 563 KEI 565 (985)
T ss_pred HHH
Confidence 654
No 176
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.42 E-value=7.1e-05 Score=83.16 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=49.7
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHHhhcC-------CceEEccCCCCHHHHHHHHHHhhc--------CCceEEEeccccc
Q 006500 367 KTFTSKVIIFSGTKQAAHRLKILFGLAA-------LKAAELHGNLTQAQRLEALELFRK--------QHVDFLIATDVAA 431 (643)
Q Consensus 367 ~~~~~~~LIF~~s~~~~~~l~~~L~~~~-------~~~~~lh~~~~~~~R~~~l~~F~~--------g~~~vLvaT~~~~ 431 (643)
+..+.++|||++++...+.+..+....+ ++- .+.+=-+..+-.+++..|-+ |-.-+.||-.-.+
T Consensus 558 rvVp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVS 636 (945)
T KOG1132|consen 558 RVVPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVS 636 (945)
T ss_pred hhcccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEeccccc
Confidence 3445679999999998888855443321 111 11111122233344444443 2334566777779
Q ss_pred ccCCCCC--ccEEEecCCCC
Q 006500 432 RGLDIIG--VQTVINYACPR 449 (643)
Q Consensus 432 ~GlDi~~--v~~VI~~d~p~ 449 (643)
+|||+.+ .+.||..++|.
T Consensus 637 EGlDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 637 EGLDFSDDNGRAVIITGLPY 656 (945)
T ss_pred CCCCccccCCceeEEecCCC
Confidence 9999965 67899999885
No 177
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.40 E-value=2.4e-08 Score=109.77 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=59.1
Q ss_pred cCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhc---CCceEEEeccccccc
Q 006500 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK---QHVDFLIATDVAARG 433 (643)
Q Consensus 368 ~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~---g~~~vLvaT~~~~~G 433 (643)
..+++|+||.+...+.+.|..++...+ .+..++|..+..+|..++.+|+. .++.+|++|.+.+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 347899999999999999999999999 99999999999999999999993 367799999998876
No 178
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.39 E-value=3.6e-06 Score=96.29 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=53.6
Q ss_pred CceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhhcccCC--Ccc-------E-EEEEeccCcHHHHHHHHHHh
Q 006500 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG--REG-------Y-AVTFVTDNDRSLLKAIAKRA 489 (643)
Q Consensus 420 ~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g--~~g-------~-~~~l~~~~d~~~l~~i~~~~ 489 (643)
..++|++-.++.+|.|-|+|-.+..+.-..|...-.|.+||.-|.- +.| . -.++++.....+...|.+..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 6789999999999999999999999998889999999999999832 222 2 22334555666666665544
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.33 E-value=1.2e-06 Score=86.47 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHhcCCC-eEEEcCCCchhHHHhHHhHHHHHhcC---CCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006500 147 KPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYR---PKRIPAIRVLILTPTRELAVQVHSMIEK 218 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~---~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 218 (643)
++.+.|..|+..++.... .+|.||.|+|||.+ +..++..+... .....+.++||++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999998 89999999999975 55566565221 1123355799999999999998888776
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.30 E-value=2.1e-06 Score=80.19 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=73.3
Q ss_pred HhhccCCceEEEEeCCHHHHHHHHHHHhhcCC--ceEEccCCCCHHHHHHHHHHhhcCCceEEEecc--cccccCCCCC-
Q 006500 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLEALELFRKQHVDFLIATD--VAARGLDIIG- 438 (643)
Q Consensus 364 ~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~--~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~--~~~~GlDi~~- 438 (643)
++... ++++|||++|+...+.+...+..... ....+.. +...+..+++.|+.+...||+++. .+.+|||+++
T Consensus 4 l~~~~-~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 4 LISAV-PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HHHCC-SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred HHhcC-CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 34443 58999999999999999999986532 1122222 356788899999999999999999 9999999997
Q ss_pred -ccEEEecCCCCC-hh-----------------------------HHHHHHhhcccCCCccEEEEEecc
Q 006500 439 -VQTVINYACPRD-LT-----------------------------SYVHRVGRTARAGREGYAVTFVTD 476 (643)
Q Consensus 439 -v~~VI~~d~p~s-~~-----------------------------~y~Qr~GRagR~g~~g~~~~l~~~ 476 (643)
++.||...+|.. +. ...|.+||+-|....--+++++++
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 889999998852 11 123999999996654444444443
No 181
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.18 E-value=2.5e-05 Score=77.95 Aligned_cols=172 Identities=19% Similarity=0.180 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----------CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEE
Q 006500 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALT----------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199 (643)
Q Consensus 130 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~----------g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~v 199 (643)
+.|+..+... ..++..|.+++-.+.+ ....++...||.||..+..-.|+++++.... +.
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-----r~ 94 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-----RA 94 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-----ce
Confidence 4666655443 2578999998877653 3568899999999998766777788776543 48
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCcc--CC--------
Q 006500 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV--DL-------- 269 (643)
Q Consensus 200 Lil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~--~l-------- 269 (643)
|++..+-.|-....+-+..+... .+.+..+..-... ....-...|+++|+..|...-...... .+
T Consensus 95 vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g 169 (303)
T PF13872_consen 95 VWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCG 169 (303)
T ss_pred EEEECChhhhhHHHHHHHHhCCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHh
Confidence 99999999988777777766432 3333333221100 001224579999999887764321111 11
Q ss_pred -CCeeEEEEeCCchhccCCh--------HHHHHHHHHHCCCCceeEEEeeccchhHHH
Q 006500 270 -DDLAVLILDEADRLLELGF--------SAEIHELVRLCPKRRQTMLFSATLTEDVDE 318 (643)
Q Consensus 270 -~~i~~lVvDEah~l~~~g~--------~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~ 318 (643)
..=.+||+||||...+..- ...+..+.+.+|..+ ++.+|||-..+..+
T Consensus 170 ~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~N 226 (303)
T PF13872_consen 170 EDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPRN 226 (303)
T ss_pred cCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCce
Confidence 1124899999999876532 245556667776655 99999998765543
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.16 E-value=4.2e-05 Score=82.04 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=68.0
Q ss_pred HHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006500 139 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (643)
Q Consensus 139 ~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 218 (643)
.+...|+.++..-|..|+..+|+..=.|++||+|+|||.+ ...|+-++... ....|||++|+...+.|+++.+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvt-sa~IVyhl~~~----~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ----HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceeh-hHHHHHHHHHh----cCCceEEEcccchhHHHHHHHHHh
Confidence 4455688899999999999999999999999999999987 45555555544 234599999999999999998887
Q ss_pred HhhcCCceEEEEec
Q 006500 219 IAQFTDIRCCLVVG 232 (643)
Q Consensus 219 l~~~~~~~v~~~~g 232 (643)
++++|.-+..
T Consensus 477 ----tgLKVvRl~a 486 (935)
T KOG1802|consen 477 ----TGLKVVRLCA 486 (935)
T ss_pred ----cCceEeeeeh
Confidence 5676665544
No 183
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.13 E-value=1.4e-05 Score=76.67 Aligned_cols=123 Identities=25% Similarity=0.244 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHhcCC--CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 006500 147 KPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g~--d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~ 224 (643)
+|++-|.+++..++.+. -+++.|+.|+|||.+ +..+...+... +.++++++||...+..+.+.. +
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~-----g~~v~~~apT~~Aa~~L~~~~-------~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA-----GKRVIGLAPTNKAAKELREKT-------G 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT-----T--EEEEESSHHHHHHHHHHH-------T
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC-----CCeEEEECCcHHHHHHHHHhh-------C
Confidence 47889999999998654 366889999999976 44455555443 346999999998877654441 2
Q ss_pred ceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccC---ccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCC
Q 006500 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM---SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301 (643)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~---~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~ 301 (643)
+.+. |-..++....... ...+....+||||||-.+. ...+..++..++.
T Consensus 68 ~~a~------------------------Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 68 IEAQ------------------------TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKK 119 (196)
T ss_dssp S-EE------------------------EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T
T ss_pred cchh------------------------hHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHh
Confidence 2221 2111111111100 0014456799999999764 3456666777766
Q ss_pred -CceeEEEee
Q 006500 302 -RRQTMLFSA 310 (643)
Q Consensus 302 -~~q~i~~SA 310 (643)
..++|++-=
T Consensus 120 ~~~klilvGD 129 (196)
T PF13604_consen 120 SGAKLILVGD 129 (196)
T ss_dssp -T-EEEEEE-
T ss_pred cCCEEEEECC
Confidence 455555543
No 184
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.97 E-value=0.0028 Score=66.71 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=68.3
Q ss_pred CceEEEEeCCHHHHHHHHHHHhhcCC-------ceEEccCCCCHHHHHHHHHHhh----cCCceEEEe--cccccccCCC
Q 006500 370 TSKVIIFSGTKQAAHRLKILFGLAAL-------KAAELHGNLTQAQRLEALELFR----KQHVDFLIA--TDVAARGLDI 436 (643)
Q Consensus 370 ~~~~LIF~~s~~~~~~l~~~L~~~~~-------~~~~lh~~~~~~~R~~~l~~F~----~g~~~vLva--T~~~~~GlDi 436 (643)
+++++.|.+++--.+.+...-...|+ +. .+-+.-+..+-.-++..++ +|.--||++ -.-.++|+|+
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL-~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF 608 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKL-LFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDF 608 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCce-EEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCccc
Confidence 56788999988777666554444432 22 3334444444455555554 355556654 4556799999
Q ss_pred CCcc--EEEecCCCCChh------------------------------HHHHHHhhcccCCCccEEEEEeccC
Q 006500 437 IGVQ--TVINYACPRDLT------------------------------SYVHRVGRTARAGREGYAVTFVTDN 477 (643)
Q Consensus 437 ~~v~--~VI~~d~p~s~~------------------------------~y~Qr~GRagR~g~~g~~~~l~~~~ 477 (643)
.+-. .||+++.|.-.. .-.|..||+-| |+.-..++++.+.
T Consensus 609 ~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr-~K~dYg~mI~aDk 680 (755)
T KOG1131|consen 609 DHHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLR-GKTDYGLMIFADK 680 (755)
T ss_pred ccccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHh-ccccceeeEeeeh
Confidence 8755 899999997322 12388999999 7777777777653
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.93 E-value=2e-05 Score=84.12 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHhcCCC-eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 006500 147 KPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 216 (643)
.+.+-|..|+..+.+.++ .++.||+|+|||.+ +.-+++.+.... .+|||++||...+..+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~T-lvEiI~qlvk~~-----k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRT-LVEIISQLVKQK-----KRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceee-HHHHHHHHHHcC-----CeEEEEcCchHHHHHHHHHh
Confidence 577889999999999865 45999999999988 444555555443 36999999999988887753
No 186
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.92 E-value=0.00011 Score=82.06 Aligned_cols=143 Identities=20% Similarity=0.209 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEE
Q 006500 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (643)
Q Consensus 149 ~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~ 228 (643)
.+.|+.++..++.++-+++.|+.|+|||++ +..++..+..........++++++||--.|..+.+.+.......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 378999999999999999999999999986 45555554432211113469999999999888877765532111100
Q ss_pred EEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccC-----ccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCc
Q 006500 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-----SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (643)
Q Consensus 229 ~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~-----~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~ 303 (643)
. .+.....+-..|-.+|+....... ......+++||||||-.+- ...+..+++.++...
T Consensus 224 -------~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 -------E-----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNT 287 (586)
T ss_pred -------h-----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCC
Confidence 0 000011122344444443221110 0123357899999998653 334566777888888
Q ss_pred eeEEEee
Q 006500 304 QTMLFSA 310 (643)
Q Consensus 304 q~i~~SA 310 (643)
++|++.=
T Consensus 288 rlIlvGD 294 (586)
T TIGR01447 288 KLILLGD 294 (586)
T ss_pred EEEEECC
Confidence 8776654
No 187
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.90 E-value=4.1e-05 Score=73.06 Aligned_cols=145 Identities=16% Similarity=0.109 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHH-------HHHHHH
Q 006500 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-------HSMIEK 218 (643)
Q Consensus 146 ~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~-------~~~~~~ 218 (643)
...+..|..++..++...-+++.||.|+|||+..+..+++.+.... -.+++|+-|+.+....+ .+.+.-
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~----~~kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE----YDKIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-----SEEEEEE-S--TT----SS---------T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC----CcEEEEEecCCCCccccccCCCCHHHHHHH
Confidence 4568899999999998888889999999999988888888776532 23688888876531110 000000
Q ss_pred HhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHH
Q 006500 219 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298 (643)
Q Consensus 219 l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~ 298 (643)
|....--....+.+... ...+.....|-+.++..+. ...+. -.+||||||..+. ...+..++..
T Consensus 79 ~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~iR-------Grt~~-~~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 79 YLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAFIR-------GRTFD-NAFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp TTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGGT-------T--B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhhc-------Ccccc-ceEEEEecccCCC----HHHHHHHHcc
Confidence 00000000000001111 1111223455555544432 12232 3799999999864 4566777777
Q ss_pred CCCCceeEEEee
Q 006500 299 CPKRRQTMLFSA 310 (643)
Q Consensus 299 ~~~~~q~i~~SA 310 (643)
+..+.+++++.-
T Consensus 143 ~g~~skii~~GD 154 (205)
T PF02562_consen 143 IGEGSKIIITGD 154 (205)
T ss_dssp B-TT-EEEEEE-
T ss_pred cCCCcEEEEecC
Confidence 777777666543
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=97.90 E-value=3.9e-05 Score=61.11 Aligned_cols=60 Identities=28% Similarity=0.386 Sum_probs=41.3
Q ss_pred HHHHHhcCCC-eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 006500 155 CIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (643)
Q Consensus 155 ~i~~~l~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 216 (643)
++...+.+.. +++.||.|||||.+ ++.++..+....... +.++||++||+.++..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~-~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTT-LAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHH-HHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443334444 55699999999976 566666665432222 457999999999999887776
No 189
>PRK10536 hypothetical protein; Provisional
Probab=97.84 E-value=0.00028 Score=69.37 Aligned_cols=144 Identities=18% Similarity=0.204 Sum_probs=79.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHH-----------HH
Q 006500 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA-----------VQ 211 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La-----------~Q 211 (643)
.++...+..|...+.++..+..+++.|++|+|||+.....+++.+.... -.+++|.=|+.+.. ..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~----~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD----VDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC----eeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 3556678899999999988888889999999999886665665554321 23567766665321 11
Q ss_pred HHHHHHHHhhcCCceEEEEecCCChHHHHHHhc-CCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHH
Q 006500 212 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290 (643)
Q Consensus 212 ~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~-~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~ 290 (643)
+.-++.-+...... +.|. ......+. ....|-|.....+ +. ..|. -.+||||||+.+. ..
T Consensus 131 ~~p~~~pi~D~L~~----~~~~---~~~~~~~~~~~~~Iei~~l~ym----RG---rtl~-~~~vIvDEaqn~~----~~ 191 (262)
T PRK10536 131 FAPYFRPVYDVLVR----RLGA---SFMQYCLRPEIGKVEIAPFAYM----RG---RTFE-NAVVILDEAQNVT----AA 191 (262)
T ss_pred HHHHHHHHHHHHHH----HhCh---HHHHHHHHhccCcEEEecHHHh----cC---Cccc-CCEEEEechhcCC----HH
Confidence 11111111110000 0111 11111111 1234555543332 22 2222 3699999999764 36
Q ss_pred HHHHHHHHCCCCceeEEEe
Q 006500 291 EIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 291 ~~~~i~~~~~~~~q~i~~S 309 (643)
.+..++..+..+.++|++.
T Consensus 192 ~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHHhhcCCCCEEEEeC
Confidence 6777777777776665543
No 190
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.83 E-value=0.00012 Score=70.59 Aligned_cols=152 Identities=21% Similarity=0.251 Sum_probs=95.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc---CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEE
Q 006500 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALT---GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (643)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~---g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil 202 (643)
.|.....+..++=-+. .++ -+++.|.+++..+.+ |.|.+...-||.|||.+ ++|++..++....+ -+-++
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~----Lvrvi 76 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR----LVRVI 76 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc----EEEEE
Confidence 4555555555544332 233 589999999999887 57999999999999987 89999998876543 36677
Q ss_pred cCcHHHHHHHHHHHHHHhh-cCCceEEEE--ecCCChHHH-----H---HHhcCCCcEEEECchhHHHHHhc-------c
Q 006500 203 TPTRELAVQVHSMIEKIAQ-FTDIRCCLV--VGGLSTKMQ-----E---TALRSMPDIVVATPGRMIDHLRN-------S 264 (643)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~-~~~~~v~~~--~g~~~~~~~-----~---~~l~~~~~Ivv~Tp~~L~~~l~~-------~ 264 (643)
+|. .|..|..+.+..-.. ..+-++..+ ......... . ........|+++||+.++.+.-. .
T Consensus 77 Vpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~ 155 (229)
T PF12340_consen 77 VPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDG 155 (229)
T ss_pred cCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhc
Confidence 785 788988888776432 223333222 222221111 1 11234567999999987554211 1
Q ss_pred Cc-----c-----CCCCeeEEEEeCCchhcc
Q 006500 265 MS-----V-----DLDDLAVLILDEADRLLE 285 (643)
Q Consensus 265 ~~-----~-----~l~~i~~lVvDEah~l~~ 285 (643)
.. + -+..-..-|+||+|.++.
T Consensus 156 ~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 156 KPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 00 0 123345679999998765
No 191
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.82 E-value=5.3e-05 Score=79.88 Aligned_cols=107 Identities=22% Similarity=0.284 Sum_probs=67.1
Q ss_pred eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhc
Q 006500 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~ 244 (643)
++|.|..|||||+. ++.++..+... ..+.++++++++..|...+...+..-. . .
T Consensus 4 ~~I~G~aGTGKTvl-a~~l~~~l~~~---~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~------------~ 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVL-ALNLAKELQNS---EEGKKVLYLCGNHPLRNKLREQLAKKY----------N------------P 57 (352)
T ss_pred EEEEecCCcCHHHH-HHHHHHHhhcc---ccCCceEEEEecchHHHHHHHHHhhhc----------c------------c
Confidence 67999999999987 56666665111 123458999999999887777776521 0 0
Q ss_pred CCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC-------hHHHHHHHHHH
Q 006500 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-------FSAEIHELVRL 298 (643)
Q Consensus 245 ~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g-------~~~~~~~i~~~ 298 (643)
......+.++..++..+.. .......+++|||||||+|...+ ....+..+++.
T Consensus 58 ~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0112234444455443331 12345678999999999998732 23555566555
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.79 E-value=0.00017 Score=80.56 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEE
Q 006500 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (643)
Q Consensus 149 ~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~ 228 (643)
.+.|+.|+-.++.++-+++.|++|+|||++ +..++..+..... ....++++++||.-.|..+.+.+.......++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~-~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLT-- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcC-CCCcEEEEECCcHHHHHHHHHHHHhhhhccccc--
Confidence 589999999999999999999999999986 4455555443211 123468999999999998888776532211110
Q ss_pred EEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccC-----ccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCc
Q 006500 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-----SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (643)
Q Consensus 229 ~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~-----~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~ 303 (643)
.. +......-..|-.+|+....... ....-.+++||||||-.+- ...+..+++.+++..
T Consensus 230 -------~~-----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 -------DE-----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHA 293 (615)
T ss_pred -------hh-----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCC
Confidence 00 00000111234344433211110 0122346899999998652 445566777888888
Q ss_pred eeEEEeec
Q 006500 304 QTMLFSAT 311 (643)
Q Consensus 304 q~i~~SAT 311 (643)
++|++.=.
T Consensus 294 rlIlvGD~ 301 (615)
T PRK10875 294 RVIFLGDR 301 (615)
T ss_pred EEEEecch
Confidence 88777543
No 193
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.77 E-value=0.00026 Score=80.05 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006500 146 SKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (643)
Q Consensus 146 ~~~~~~Q~~~i~~~l~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 218 (643)
..+.+.|..++..++.. ..+++.||+|+|||.+ +..++..+... +.+||+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~-----g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKR-----GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHc-----CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999999887 5677999999999976 45555555443 23699999999999998887765
No 194
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.75 E-value=0.00033 Score=80.41 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=80.0
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 142 ~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
..++ .+++-|++++..+..++-+++.|+.|+|||++ +-.++..+.... ....+++++||...|.++.+..
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~---~~~~v~l~ApTg~AA~~L~e~~----- 388 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELG---GLLPVGLAAPTGRAAKRLGEVT----- 388 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcC---CCceEEEEeCchHHHHHHHHhc-----
Confidence 3454 59999999999999999899999999999975 444444443321 0135889999988877554321
Q ss_pred cCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhcc----CccCCCCeeEEEEeCCchhccCChHHHHHHHHH
Q 006500 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297 (643)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~----~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~ 297 (643)
+... .|-.+|+...... ..-.....++||||||+.+.. ..+..++.
T Consensus 389 --g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~ 438 (720)
T TIGR01448 389 --GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLA 438 (720)
T ss_pred --CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHH
Confidence 2111 1111111110000 000123467999999997643 23456667
Q ss_pred HCCCCceeEEEeec
Q 006500 298 LCPKRRQTMLFSAT 311 (643)
Q Consensus 298 ~~~~~~q~i~~SAT 311 (643)
.++...++|++.=+
T Consensus 439 ~~~~~~rlilvGD~ 452 (720)
T TIGR01448 439 ALPDHARLLLVGDT 452 (720)
T ss_pred hCCCCCEEEEECcc
Confidence 77877777776543
No 195
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.40 E-value=0.00042 Score=61.64 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=22.4
Q ss_pred eEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeecc
Q 006500 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (643)
Q Consensus 273 ~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~ 312 (643)
.+|||||||++.. ...+..+........=.+++++|+
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEECh
Confidence 6899999999742 444444444444433345666664
No 196
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.0015 Score=69.79 Aligned_cols=142 Identities=17% Similarity=0.176 Sum_probs=68.5
Q ss_pred EEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH-HhhcCCceEEEEecCCChHHH----HH
Q 006500 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVGGLSTKMQ----ET 241 (643)
Q Consensus 167 ~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~-l~~~~~~~v~~~~g~~~~~~~----~~ 241 (643)
..+.||||||++.. .++-+++..+-+ ..|+.|............+.. ++...=+.-.+.+++...... ..
T Consensus 2 f~matgsgkt~~ma-~lil~~y~kgyr----~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fs 76 (812)
T COG3421 2 FEMATGSGKTLVMA-GLILECYKKGYR----NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFS 76 (812)
T ss_pred cccccCCChhhHHH-HHHHHHHHhchh----hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccC
Confidence 46789999999844 444444443322 367777765554433222111 000000000111111111000 00
Q ss_pred HhcCCCcEEEECchhHHHHHhccC--cc---CCCCee-EEEEeCCchhccCC-------------hHHHHHHHHHHCCCC
Q 006500 242 ALRSMPDIVVATPGRMIDHLRNSM--SV---DLDDLA-VLILDEADRLLELG-------------FSAEIHELVRLCPKR 302 (643)
Q Consensus 242 ~l~~~~~Ivv~Tp~~L~~~l~~~~--~~---~l~~i~-~lVvDEah~l~~~g-------------~~~~~~~i~~~~~~~ 302 (643)
.......|+++|.+.|...+.+.. .+ ++.+.. +++-||||++-... +...+..-+ ...+.
T Consensus 77 ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~-~~nkd 155 (812)
T COG3421 77 EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL-EQNKD 155 (812)
T ss_pred ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH-hcCCC
Confidence 023346799999999977665432 12 233334 46679999975311 112111111 12344
Q ss_pred ceeEEEeeccch
Q 006500 303 RQTMLFSATLTE 314 (643)
Q Consensus 303 ~q~i~~SAT~~~ 314 (643)
.-++.+|||.+.
T Consensus 156 ~~~lef~at~~k 167 (812)
T COG3421 156 NLLLEFSATIPK 167 (812)
T ss_pred ceeehhhhcCCc
Confidence 456889999983
No 197
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.33 E-value=0.00044 Score=71.56 Aligned_cols=124 Identities=24% Similarity=0.237 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceE
Q 006500 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227 (643)
Q Consensus 148 ~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v 227 (643)
+++-|.++|.. ...+++|.|..|||||.+.+.-++ .++.... ..+.++|+|++|+.+|..+.+.+..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~-~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIA-YLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEEEQQE- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHH-HHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHH-Hhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCccccc-
Confidence 57889999987 677899999999999998444444 4444332 445679999999999999988888865432110
Q ss_pred EEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCC-CCeeEEEEeCCc
Q 006500 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDL-DDLAVLILDEAD 281 (643)
Q Consensus 228 ~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l-~~i~~lVvDEah 281 (643)
................+.|+|-..+...+-....... -.-.+-++|+..
T Consensus 76 -----~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 -----SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -----CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred -----ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000011122223456788998877654433211111 112356666666
No 198
>PRK08181 transposase; Validated
Probab=97.28 E-value=0.0051 Score=61.77 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=61.5
Q ss_pred HHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChH
Q 006500 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237 (643)
Q Consensus 158 ~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~ 237 (643)
++-.+++++++||+|+|||.. +..+...+.... ..|++ ++...|..++......
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHL-a~Aia~~a~~~g-----~~v~f-~~~~~L~~~l~~a~~~------------------- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHL-AAAIGLALIENG-----WRVLF-TRTTDLVQKLQVARRE------------------- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHH-HHHHHHHHHHcC-----Cceee-eeHHHHHHHHHHHHhC-------------------
Confidence 455678999999999999965 333333443321 12444 4555665444221000
Q ss_pred HHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC-hHHHHHHHHHHCCCCceeEEEeeccchhH
Q 006500 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (643)
Q Consensus 238 ~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g-~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 316 (643)
.+...++..+ .++++|||||.+.+.... -...+..+++.......+|+.|-..+.+.
T Consensus 156 --------------~~~~~~l~~l--------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w 213 (269)
T PRK08181 156 --------------LQLESAIAKL--------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEW 213 (269)
T ss_pred --------------CcHHHHHHHH--------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 0122222222 346699999999765433 23456677766544445666555554443
Q ss_pred H
Q 006500 317 D 317 (643)
Q Consensus 317 ~ 317 (643)
.
T Consensus 214 ~ 214 (269)
T PRK08181 214 N 214 (269)
T ss_pred H
Confidence 3
No 199
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0032 Score=66.54 Aligned_cols=130 Identities=17% Similarity=0.155 Sum_probs=69.5
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCc-HHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Pt-r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (643)
+.+++.||||+|||++. .-+..++............||-+-| |.-+..+ ++.|+...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~-aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~------------ 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTI-AKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA------------ 238 (388)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe------------
Confidence 46779999999999873 3333333221111111223343333 4444322 55555545554422
Q ss_pred HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccC-ChHHHHHHHHHHCCCC-ceeEEEeeccchh-HHH
Q 006500 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKR-RQTMLFSATLTED-VDE 318 (643)
Q Consensus 242 ~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~-g~~~~~~~i~~~~~~~-~q~i~~SAT~~~~-~~~ 318 (643)
+.++..+...+.. +.++++||||++.++... .....+..++.....+ --.+.+|||.... +.+
T Consensus 239 ---------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 239 ---------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred ---------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 1134444444433 246789999999987632 1334555666655433 3568899998744 333
Q ss_pred HHHH
Q 006500 319 LIKL 322 (643)
Q Consensus 319 ~~~~ 322 (643)
.+..
T Consensus 305 ~~~~ 308 (388)
T PRK12723 305 IFHQ 308 (388)
T ss_pred HHHH
Confidence 3333
No 200
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.27 E-value=0.0016 Score=58.63 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=41.2
Q ss_pred EEccCCCCHHHHHHHHHHhhcCCc-eEEEecccccccCCCCC--ccEEEecCCCC
Q 006500 398 AELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIG--VQTVINYACPR 449 (643)
Q Consensus 398 ~~lh~~~~~~~R~~~l~~F~~g~~-~vLvaT~~~~~GlDi~~--v~~VI~~d~p~ 449 (643)
..+..+.+..+...+++.|+.... .||++|..+++|+|+|+ ++.||...+|.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344555666677889999987543 79999988999999998 67899888875
No 201
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.23 E-value=0.0012 Score=65.86 Aligned_cols=79 Identities=19% Similarity=0.345 Sum_probs=61.6
Q ss_pred HHHHHhhcCCceEEEecccccccCCCCC--------ccEEEecCCCCChhHHHHHHhhcccCCCc-cEEEEEecc---Cc
Q 006500 411 EALELFRKQHVDFLIATDVAARGLDIIG--------VQTVINYACPRDLTSYVHRVGRTARAGRE-GYAVTFVTD---ND 478 (643)
Q Consensus 411 ~~l~~F~~g~~~vLvaT~~~~~GlDi~~--------v~~VI~~d~p~s~~~y~Qr~GRagR~g~~-g~~~~l~~~---~d 478 (643)
...+.|++|+..|+|.|++++.||.+.. -++-|.+.+||+....+|..||++|.|+. ...|.++.. .+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5578899999999999999999999853 34567899999999999999999999874 444555443 35
Q ss_pred HHHHHHHHHHh
Q 006500 479 RSLLKAIAKRA 489 (643)
Q Consensus 479 ~~~l~~i~~~~ 489 (643)
..+...+.+++
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 55666666554
No 202
>PRK06526 transposase; Provisional
Probab=97.12 E-value=0.0073 Score=60.30 Aligned_cols=46 Identities=17% Similarity=0.065 Sum_probs=28.1
Q ss_pred CeeEEEEeCCchhccCC-hHHHHHHHHHHCCCCceeEEEeeccchhH
Q 006500 271 DLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~g-~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 316 (643)
.+.+|||||+|.+.... -...+..+++.......+|+.|...+...
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w 205 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRW 205 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHH
Confidence 46799999999765322 23345566554333345777777765543
No 203
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.10 E-value=0.007 Score=69.93 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 006500 132 LSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (643)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~ 210 (643)
+++..+...-..++ .+++-|..++..++.+ +-+++.|+.|+|||++ +-.+++.+... +.++++++||--.|.
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~~-----g~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEAA-----GYRVIGAALSGKAAE 410 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHhC-----CCeEEEEeCcHHHHH
Confidence 44444333322333 5899999999999885 5567999999999976 34444443322 346999999977765
Q ss_pred HHH
Q 006500 211 QVH 213 (643)
Q Consensus 211 Q~~ 213 (643)
.+.
T Consensus 411 ~L~ 413 (744)
T TIGR02768 411 GLQ 413 (744)
T ss_pred HHH
Confidence 543
No 204
>PRK04296 thymidine kinase; Provisional
Probab=97.10 E-value=0.0017 Score=61.93 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=58.0
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCc---HHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHH
Q 006500 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT---RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Pt---r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~ 240 (643)
=.++.|++|+|||+. ++-++.++... +.+++|+-|. +....++ ....++.+.
T Consensus 4 i~litG~~GsGKTT~-~l~~~~~~~~~-----g~~v~i~k~~~d~~~~~~~i-------~~~lg~~~~------------ 58 (190)
T PRK04296 4 LEFIYGAMNSGKSTE-LLQRAYNYEER-----GMKVLVFKPAIDDRYGEGKV-------VSRIGLSRE------------ 58 (190)
T ss_pred EEEEECCCCCHHHHH-HHHHHHHHHHc-----CCeEEEEeccccccccCCcE-------ecCCCCccc------------
Confidence 367899999999976 55555555433 2357887663 2221111 111111110
Q ss_pred HHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeecc
Q 006500 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (643)
Q Consensus 241 ~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~ 312 (643)
.+.+..+..++..+.. .-.++.+|||||||.+. ...+..+++.+......+++++-.
T Consensus 59 -------~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 59 -------AIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred -------ceEeCChHHHHHHHHh----hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEecC
Confidence 0123444455555433 22457899999998542 233555666644344456666543
No 205
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.05 E-value=0.0025 Score=57.54 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=44.5
Q ss_pred HHHHHHHHhhcCC---ceEEccCCCCHHHHHHHHHHhhcCCc---eEEEeccc--ccccCCCCC--ccEEEecCCCC
Q 006500 383 AHRLKILFGLAAL---KAAELHGNLTQAQRLEALELFRKQHV---DFLIATDV--AARGLDIIG--VQTVINYACPR 449 (643)
Q Consensus 383 ~~~l~~~L~~~~~---~~~~lh~~~~~~~R~~~l~~F~~g~~---~vLvaT~~--~~~GlDi~~--v~~VI~~d~p~ 449 (643)
.+.+...+...+. ....+.......+...+++.|++... .||+++.. +++|||+|+ ++.||..++|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3445555554432 12233333333455788889987543 68988877 899999998 68899988884
No 206
>PRK14974 cell division protein FtsY; Provisional
Probab=97.03 E-value=0.0099 Score=61.62 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=39.7
Q ss_pred CeeEEEEeCCchhc-cCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHh
Q 006500 271 DLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS 323 (643)
Q Consensus 271 ~i~~lVvDEah~l~-~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 323 (643)
.+++|+||.|.++. +..+...+..+.+...+..-+++++||...+....+..+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 46799999999886 344667777777777777778899999887666655544
No 207
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.01 E-value=0.011 Score=69.56 Aligned_cols=63 Identities=21% Similarity=0.075 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHhcCCC-eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 006500 143 LGYSKPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (643)
Q Consensus 143 ~g~~~~~~~Q~~~i~~~l~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~ 212 (643)
.|+ .+++-|..++..++.+++ +++.|..|+|||++ +-.+...+.. .+.+|+.++||--.|..+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-----~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-----AGYEVRGAALSGIAAENL 406 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----cCCeEEEecCcHHHHHHH
Confidence 454 599999999999999765 56999999999986 4444444422 244699999998776544
No 208
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.97 E-value=0.0056 Score=69.18 Aligned_cols=135 Identities=18% Similarity=0.112 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCC-eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 006500 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (643)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La 209 (643)
.+.+.+.+- -+..+..-|++|+-.++..+| .+|.|-+|+|||++ +..++..|... +.+||+.+=|-..+
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~~-----gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVAL-----GKKVLLTSYTHSAV 726 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHHc-----CCeEEEEehhhHHH
Confidence 344554443 244688899999999998876 55899999999986 44455555544 33599999998775
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCCChHH--H---------------HHHhcCCCcEEEECchhHHHHHhccCccCCCCe
Q 006500 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKM--Q---------------ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (643)
Q Consensus 210 ~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~--~---------------~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i 272 (643)
..+ +.++.+ .++.+.-+-.+..... + ...+...+.||.+|--.+-..| +....+
T Consensus 727 DNI---LiKL~~-~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-----f~~R~F 797 (1100)
T KOG1805|consen 727 DNI---LIKLKG-FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL-----FVNRQF 797 (1100)
T ss_pred HHH---HHHHhc-cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh-----hhcccc
Confidence 555 444432 2333222111111111 1 1122345788888866554333 334568
Q ss_pred eEEEEeCCchhc
Q 006500 273 AVLILDEADRLL 284 (643)
Q Consensus 273 ~~lVvDEah~l~ 284 (643)
+++|||||-.++
T Consensus 798 D~cIiDEASQI~ 809 (1100)
T KOG1805|consen 798 DYCIIDEASQIL 809 (1100)
T ss_pred CEEEEccccccc
Confidence 999999999865
No 209
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.95 E-value=0.0019 Score=74.75 Aligned_cols=154 Identities=21% Similarity=0.148 Sum_probs=93.4
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcC-----------C-CCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEE
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYR-----------P-KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~-----------~-~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~ 229 (643)
|++++....+|+|||..-+...+..+-+. . .....+.+|||+|. ++..||.+++...+.. .+.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~-~lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS-LLKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc-cceEEE
Confidence 57789999999999987554444332110 0 01123458999998 5668999999986643 367777
Q ss_pred EecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCcc-------------C----C--CCeeEEEEeCCchhccCChHH
Q 006500 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV-------------D----L--DDLAVLILDEADRLLELGFSA 290 (643)
Q Consensus 230 ~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~-------------~----l--~~i~~lVvDEah~l~~~g~~~ 290 (643)
+.|-.....-...---.+|||+||+..|...+...... . | -.|=-|+||||..+-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 76642221111111234899999999998877543111 0 1 1122589999996654 334
Q ss_pred HHHHHHHHCCCCceeEEEeeccchhHHHHH
Q 006500 291 EIHELVRLCPKRRQTMLFSATLTEDVDELI 320 (643)
Q Consensus 291 ~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 320 (643)
...+.+..++. ...-.+|+||-..+.++.
T Consensus 530 ~~a~M~~rL~~-in~W~VTGTPiq~Iddl~ 558 (1394)
T KOG0298|consen 530 AAAEMVRRLHA-INRWCVTGTPIQKIDDLF 558 (1394)
T ss_pred HHHHHHHHhhh-hceeeecCCchhhhhhhH
Confidence 44444444443 334678999766555543
No 210
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.90 E-value=0.014 Score=52.18 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=18.8
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERL 187 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l 187 (643)
++.+++.|++|+|||.. +..+...+
T Consensus 19 ~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 67899999999999975 44444444
No 211
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.005 Score=64.53 Aligned_cols=131 Identities=21% Similarity=0.206 Sum_probs=64.3
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (643)
|..+++.||||+|||++. .-+...+..... ..++.++. +-..-.--.+.++.|+...++.+..
T Consensus 137 g~ii~lvGptGvGKTTti-akLA~~~~~~~G---~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~------------ 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT-AKLAARCVMRFG---ASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA------------ 199 (374)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHHhcC---CCeEEEEe-cccccccHHHHHHHHHHHcCCceEe------------
Confidence 567889999999999873 333333321111 11344333 2221111134455555444544332
Q ss_pred HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC-hHHHHHHHHHHCCCCceeEEEeeccchhH-HHH
Q 006500 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDV-DEL 319 (643)
Q Consensus 242 ~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g-~~~~~~~i~~~~~~~~q~i~~SAT~~~~~-~~~ 319 (643)
+.+++.+...+.. +.+.++|+||.+-+..... ....+..+.........++++|||...+. .+.
T Consensus 200 ---------~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 200 ---------VKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred ---------cCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 3334444333332 2345789999997553222 22233333222223344788899986554 334
Q ss_pred HHHh
Q 006500 320 IKLS 323 (643)
Q Consensus 320 ~~~~ 323 (643)
++.+
T Consensus 266 i~~f 269 (374)
T PRK14722 266 VQAY 269 (374)
T ss_pred HHHH
Confidence 4443
No 212
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.83 E-value=0.017 Score=60.25 Aligned_cols=133 Identities=23% Similarity=0.261 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (643)
++-+.+.||||.|||++ +.-+..+.. ..... ....||.+-|-=.+. +++++.++...++.+.+
T Consensus 203 ~~vi~LVGPTGVGKTTT-lAKLAar~~-~~~~~-~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~v------------ 265 (407)
T COG1419 203 KRVIALVGPTGVGKTTT-LAKLAARYV-MLKKK-KKVAIITTDTYRIGA--VEQLKTYADIMGVPLEV------------ 265 (407)
T ss_pred CcEEEEECCCCCcHHHH-HHHHHHHHH-hhccC-cceEEEEeccchhhH--HHHHHHHHHHhCCceEE------------
Confidence 67788999999999987 333322222 11111 113455555432222 34566666555665544
Q ss_pred HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc-cCChHHHHHHHHHHCCCCceeEEEeeccch-hHHHH
Q 006500 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTE-DVDEL 319 (643)
Q Consensus 242 ~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~-~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~-~~~~~ 319 (643)
+-+|.-|...+.. +.+.++|.||=+-+-. +......+..++......--.+.+|||... ++.+.
T Consensus 266 ---------v~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 266 ---------VYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred ---------ecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 4455555554443 3455778888776532 222455666666666444556888998764 45555
Q ss_pred HHHhcC
Q 006500 320 IKLSLT 325 (643)
Q Consensus 320 ~~~~~~ 325 (643)
+..+-.
T Consensus 332 ~~~f~~ 337 (407)
T COG1419 332 IKQFSL 337 (407)
T ss_pred HHHhcc
Confidence 555433
No 213
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.74 E-value=0.028 Score=66.60 Aligned_cols=75 Identities=19% Similarity=0.059 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 006500 131 NLSRPLLRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (643)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La 209 (643)
++++..+......++ .+++-|..++..+.. ++-+++.|+.|+|||++ +-++...+.. .+.+|+.++||--.|
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-----~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-----AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----cCCeEEEEcCcHHHH
Confidence 455555555544444 599999999998865 45567999999999986 4555554432 244699999997776
Q ss_pred HHH
Q 006500 210 VQV 212 (643)
Q Consensus 210 ~Q~ 212 (643)
..+
T Consensus 439 ~~L 441 (1102)
T PRK13826 439 EGL 441 (1102)
T ss_pred HHH
Confidence 554
No 214
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.018 Score=60.30 Aligned_cols=128 Identities=17% Similarity=0.142 Sum_probs=67.0
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEE-c-CcHH-HHHHHHHHHHHHhhcCCceEEEEecCCChHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL-T-PTRE-LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil-~-Ptr~-La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~ 239 (643)
+.+++.||||+|||++. ..+...+... +.+++++ + |-|. .+.|+ +.++...++.+.
T Consensus 242 ~vI~LVGptGvGKTTTi-aKLA~~L~~~-----GkkVglI~aDt~RiaAvEQL----k~yae~lgipv~----------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL-AKMAWQFHGK-----KKTVGFITTDHSRIGTVQQL----QDYVKTIGFEVI----------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHH-HHHHHHHHHc-----CCcEEEEecCCcchHHHHHH----HHHhhhcCCcEE-----------
Confidence 45779999999999863 3333333322 1234443 3 3342 33343 333332333322
Q ss_pred HHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccC-ChHHHHHHHHHHCCCCceeEEEeeccch-hHH
Q 006500 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE-DVD 317 (643)
Q Consensus 240 ~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~-g~~~~~~~i~~~~~~~~q~i~~SAT~~~-~~~ 317 (643)
++.+|..|.+.+.... ...++++|+||-+-+.... .....+..++....+..-++.+|||... ++.
T Consensus 301 ----------v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~ 368 (436)
T PRK11889 301 ----------AVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 368 (436)
T ss_pred ----------ecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHH
Confidence 1335666665554311 1124678999999876532 2344455555544444445778998664 445
Q ss_pred HHHHHh
Q 006500 318 ELIKLS 323 (643)
Q Consensus 318 ~~~~~~ 323 (643)
..+..+
T Consensus 369 ~i~~~F 374 (436)
T PRK11889 369 EIITNF 374 (436)
T ss_pred HHHHHh
Confidence 555544
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.69 E-value=0.0092 Score=57.14 Aligned_cols=127 Identities=19% Similarity=0.222 Sum_probs=69.0
Q ss_pred eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc--CcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHH
Q 006500 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT--PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~--Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (643)
+++.||||+|||++ +.-+..++..... ++.+++ ..|.-| .++++.++...++.+........
T Consensus 4 i~lvGptGvGKTTt-~aKLAa~~~~~~~-----~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTT-IAKLAARLKLKGK-----KVALISADTYRIGA---VEQLKTYAEILGVPFYVARTESD------- 67 (196)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHTT-------EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSC-------
T ss_pred EEEECCCCCchHhH-HHHHHHHHhhccc-----cceeecCCCCCccH---HHHHHHHHHHhccccchhhcchh-------
Confidence 56899999999987 4444444433311 233333 334343 34455555555666544322211
Q ss_pred hcCCCcEEEECchhH-HHHHhccCccCCCCeeEEEEeCCchhcc-CChHHHHHHHHHHCCCCceeEEEeeccchhHHHHH
Q 006500 243 LRSMPDIVVATPGRM-IDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 320 (643)
Q Consensus 243 l~~~~~Ivv~Tp~~L-~~~l~~~~~~~l~~i~~lVvDEah~l~~-~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 320 (643)
|..+ ...+.. ....++++|+||=+.+... ......+..++....+..-.+.+|||...+....+
T Consensus 68 -----------~~~~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 68 -----------PAEIAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp -----------HHHHHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred -----------hHHHHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 1111 122221 1123467899998876542 23456666777777666667899999987655444
Q ss_pred H
Q 006500 321 K 321 (643)
Q Consensus 321 ~ 321 (643)
.
T Consensus 134 ~ 134 (196)
T PF00448_consen 134 L 134 (196)
T ss_dssp H
T ss_pred H
Confidence 3
No 216
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.68 E-value=0.0042 Score=55.24 Aligned_cols=41 Identities=27% Similarity=0.120 Sum_probs=25.9
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
+..+++.||+|+|||.. +..++..+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl-~~~l~~~~~~~~-----~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTL-ARALARELGPPG-----GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHH-HHHHHhccCCCC-----CCEEEECCEEcc
Confidence 46788999999999986 333333332211 136777777554
No 217
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.67 E-value=0.0053 Score=60.51 Aligned_cols=89 Identities=21% Similarity=0.307 Sum_probs=65.1
Q ss_pred CCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecC-CChHHHHHHhc-CCCcEEEECchhHHHHHhccCccCC
Q 006500 192 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG-LSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDL 269 (643)
Q Consensus 192 ~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~-~~~~~~~~~l~-~~~~Ivv~Tp~~L~~~l~~~~~~~l 269 (643)
.....|.+|||+..-.-|..+.+.++.|.. .+..|+-++.- .....+...+. ...+|.|+||+||..++.+. .+.+
T Consensus 122 ~~~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~-~L~l 199 (252)
T PF14617_consen 122 KEKGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG-ALSL 199 (252)
T ss_pred cCCCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC-CCCc
Confidence 344567899999986666677776666521 12444555544 35666666666 46899999999999999775 7889
Q ss_pred CCeeEEEEeCCch
Q 006500 270 DDLAVLILDEADR 282 (643)
Q Consensus 270 ~~i~~lVvDEah~ 282 (643)
+++.+||||=-|.
T Consensus 200 ~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 200 SNLKRIVLDWSYL 212 (252)
T ss_pred ccCeEEEEcCCcc
Confidence 9999999998774
No 218
>PRK06921 hypothetical protein; Provisional
Probab=96.67 E-value=0.018 Score=57.92 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=27.4
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q 211 (643)
.+.++++.|++|+|||.. +..+...+.... +..++++ +..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~~~----g~~v~y~-~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMRKK----GVPVLYF-PFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhhhc----CceEEEE-EHHHHHHH
Confidence 357799999999999975 445555554321 2235554 44455443
No 219
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.67 E-value=0.027 Score=60.68 Aligned_cols=128 Identities=23% Similarity=0.255 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHh-cCCCCCCCeEEE-EEcCc-HHHHHHHHHHHHHHhhcCCceEEEEecCCChHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLL-YRPKRIPAIRVL-ILTPT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~-~~~~~~~~~~vL-il~Pt-r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~ 238 (643)
++.+++.||||+|||++. .-+...+. ... +.+|. |-+-+ |.-+ .+.+..|+...++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~-~kLA~~~~~~~~----g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~~--------- 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTL-AKLAARYALLYG----KKKVALITLDTYRIGA---VEQLKTYAKIMGIPVEV--------- 283 (424)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHHhcC----CCeEEEEECCccHHHH---HHHHHHHHHHhCCceEc---------
Confidence 456779999999999863 33333332 111 11243 33322 3322 23444444434443322
Q ss_pred HHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhcc-CChHHHHHHHHHHC-CCCceeEEEeeccchh-
Q 006500 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLC-PKRRQTMLFSATLTED- 315 (643)
Q Consensus 239 ~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~-~g~~~~~~~i~~~~-~~~~q~i~~SAT~~~~- 315 (643)
+.++..+...+.. +..+++||||-+-+... ......+..++... ....-.+++|||....
T Consensus 284 ------------~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 284 ------------VYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred ------------cCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 2344445444443 23578999999876432 22334555555522 2334478899988754
Q ss_pred HHHHHHHh
Q 006500 316 VDELIKLS 323 (643)
Q Consensus 316 ~~~~~~~~ 323 (643)
+......+
T Consensus 347 l~~~~~~f 354 (424)
T PRK05703 347 LKDIYKHF 354 (424)
T ss_pred HHHHHHHh
Confidence 44444443
No 220
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.63 E-value=0.011 Score=60.30 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=48.1
Q ss_pred HHCCCCCCCHHHHHHHHHHhcCC--CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 141 EALGYSKPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 141 ~~~g~~~~~~~Q~~~i~~~l~g~--d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
+.+|+......|.-|+.+++.-. =|.+.|+.|||||+.++.+.++..+.++. --+++|.=|+..+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~---y~KiiVtRp~vpv 288 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR---YRKIIVTRPTVPV 288 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh---hceEEEecCCcCc
Confidence 34688877888888998888753 35589999999998888888877765432 2257887777554
No 221
>PRK08116 hypothetical protein; Validated
Probab=96.47 E-value=0.051 Score=54.82 Aligned_cols=109 Identities=18% Similarity=0.200 Sum_probs=57.9
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (643)
..+++.|++|+|||.. +..+.+.+.... ..+++ .+..+|...+...+.. . +.
T Consensus 115 ~gl~l~G~~GtGKThL-a~aia~~l~~~~-----~~v~~-~~~~~ll~~i~~~~~~-----~-------~~--------- 166 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL-AACIANELIEKG-----VPVIF-VNFPQLLNRIKSTYKS-----S-------GK--------- 166 (268)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHHcC-----CeEEE-EEHHHHHHHHHHHHhc-----c-------cc---------
Confidence 3588999999999976 455666665432 12444 4455554443332211 0 00
Q ss_pred hcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCch--hccCChHHHHHHHHHHCC-CCceeEEEeeccchhHH
Q 006500 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR--LLELGFSAEIHELVRLCP-KRRQTMLFSATLTEDVD 317 (643)
Q Consensus 243 l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~--l~~~g~~~~~~~i~~~~~-~~~q~i~~SAT~~~~~~ 317 (643)
.+...++..+ .+.++||||+.+. ..+| ....+..+++... ...++|+.|-..+.++.
T Consensus 167 ---------~~~~~~~~~l--------~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 167 ---------EDENEIIRSL--------VNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred ---------ccHHHHHHHh--------cCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 0111223322 3456899999964 3333 3455666666543 33456666655544443
No 222
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.42 E-value=0.049 Score=53.92 Aligned_cols=109 Identities=19% Similarity=0.319 Sum_probs=58.5
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (643)
..+++.|++|+|||.. +..+...+.... ..++++ +...|...+...+.. .
T Consensus 100 ~~~~l~G~~GtGKThL-a~aia~~l~~~g-----~~v~~i-t~~~l~~~l~~~~~~-------------~---------- 149 (244)
T PRK07952 100 ASFIFSGKPGTGKNHL-AAAICNELLLRG-----KSVLII-TVADIMSAMKDTFSN-------------S---------- 149 (244)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHhcC-----CeEEEE-EHHHHHHHHHHHHhh-------------c----------
Confidence 4788999999999976 455555555432 235554 444443322221100 0
Q ss_pred hcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHH-HHHHHHHHCCC-CceeEEEeeccchhHH
Q 006500 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA-EIHELVRLCPK-RRQTMLFSATLTEDVD 317 (643)
Q Consensus 243 l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~-~~~~i~~~~~~-~~q~i~~SAT~~~~~~ 317 (643)
-.+...++.. +..+++|||||.+......+.. .+..|++.... ...+|+.|---..++.
T Consensus 150 --------~~~~~~~l~~--------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 150 --------ETSEEQLLND--------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred --------cccHHHHHHH--------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 0122233333 2347799999999876444443 45556655332 4456666554444443
No 223
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.37 E-value=0.0082 Score=59.59 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=34.4
Q ss_pred cccCCcccCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCC
Q 006500 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 192 (643)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~ 192 (643)
....+|++|++++-+.+.+.. ...=++|.||||||||++ +..++.++..+..
T Consensus 103 ~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 103 SKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred ccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 345567777776655443211 112367999999999988 7888888876543
No 224
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.36 E-value=0.019 Score=60.86 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHH------hcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 006500 148 PTPIQAACIPLA------LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (643)
Q Consensus 148 ~~~~Q~~~i~~~------l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~ 212 (643)
|++-|+.++..+ ..+..+.+.|+-|+|||.. +-.+...+.. .+..+++++||...|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~----~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS----RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc----ccceEEEecchHHHHHhc
Confidence 677899998887 5678899999999999974 5555444443 234699999998887765
No 225
>PRK12377 putative replication protein; Provisional
Probab=96.30 E-value=0.035 Score=55.10 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=28.0
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~ 213 (643)
..++++.|++|+|||.. +..+.+.+.... ..+ +.++..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~g-----~~v-~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAKG-----RSV-IVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHcC-----CCe-EEEEHHHHHHHHH
Confidence 36789999999999975 455555554322 123 4445556655543
No 226
>PHA02533 17 large terminase protein; Provisional
Probab=96.29 E-value=0.04 Score=60.94 Aligned_cols=148 Identities=14% Similarity=0.104 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC--
Q 006500 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-- 224 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~-- 224 (643)
.|.|+|...+..+..++-.++..+=..|||.+....++......+ +..+++++|++.-|..+++.++......+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~----~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK----DKNVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 488999999988876777778888999999876544544443322 34799999999999988887776543321
Q ss_pred ceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCC--C
Q 006500 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK--R 302 (643)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~--~ 302 (643)
.+...... ......+.+++.|.+.|... ....-.+..++|+||+|.+.+ +...+..+...+.. .
T Consensus 135 ~~~~i~~~----~~~~I~l~NGS~I~~lss~~--------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~ 200 (534)
T PHA02533 135 LQPGIVEW----NKGSIELENGSKIGAYASSP--------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRS 200 (534)
T ss_pred hhcceeec----CccEEEeCCCCEEEEEeCCC--------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCC
Confidence 11111000 00111224455554444211 111122456899999997654 33333333333322 2
Q ss_pred ceeEEEeecc
Q 006500 303 RQTMLFSATL 312 (643)
Q Consensus 303 ~q~i~~SAT~ 312 (643)
.+++++|.+.
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 3455666553
No 227
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.28 E-value=0.052 Score=59.57 Aligned_cols=111 Identities=14% Similarity=0.187 Sum_probs=73.5
Q ss_pred HHHhhccCCceEEEEeCCHHHHHHHHHHHhhcCC-------ceEEccCCCCHHHHHHHHHHhhc----CCceEEEec--c
Q 006500 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL-------KAAELHGNLTQAQRLEALELFRK----QHVDFLIAT--D 428 (643)
Q Consensus 362 ~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~-------~~~~lh~~~~~~~R~~~l~~F~~----g~~~vLvaT--~ 428 (643)
..++.. .++++++|++|+.-...+.+.+...|+ +-..+-..-+ -..+++.|.. |.-.+|+|. .
T Consensus 622 ~nL~~~-VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGG 697 (821)
T KOG1133|consen 622 SNLSNA-VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGG 697 (821)
T ss_pred HHHHhh-CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 334444 458999999999999999998886654 2222222222 3455666653 454566664 5
Q ss_pred cccccCCCCC--ccEEEecCCCCC-h-----------------------h--------HHHHHHhhcccCCCccEEEEEe
Q 006500 429 VAARGLDIIG--VQTVINYACPRD-L-----------------------T--------SYVHRVGRTARAGREGYAVTFV 474 (643)
Q Consensus 429 ~~~~GlDi~~--v~~VI~~d~p~s-~-----------------------~--------~y~Qr~GRagR~g~~g~~~~l~ 474 (643)
-+++|||+.+ ++.||..++|.. . . ..-|.+|||-|.-+.=.+++|+
T Consensus 698 KlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~Ll 777 (821)
T KOG1133|consen 698 KLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLL 777 (821)
T ss_pred ccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEe
Confidence 6689999977 889999998862 1 1 1228899998866666666666
Q ss_pred cc
Q 006500 475 TD 476 (643)
Q Consensus 475 ~~ 476 (643)
+.
T Consensus 778 D~ 779 (821)
T KOG1133|consen 778 DK 779 (821)
T ss_pred hh
Confidence 54
No 228
>PRK08727 hypothetical protein; Validated
Probab=96.22 E-value=0.026 Score=55.75 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=24.3
Q ss_pred CeeEEEEeCCchhccCC-hHHHHHHHHHHCCCCceeEEEeeccc
Q 006500 271 DLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLT 313 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~g-~~~~~~~i~~~~~~~~q~i~~SAT~~ 313 (643)
++.+|||||+|.+..+. ....+..+++........+++|+..+
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~ 136 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQM 136 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 35689999999887533 33445555554432222355555433
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.18 E-value=0.14 Score=53.14 Aligned_cols=44 Identities=25% Similarity=0.212 Sum_probs=27.9
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~ 212 (643)
+.++++.|+||+|||.. +..+...+... +..|++ .+...|..++
T Consensus 183 ~~~Lll~G~~GtGKThL-a~aIa~~l~~~-----g~~V~y-~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFL-SNCIAKELLDR-----GKSVIY-RTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHH-HHHHHHHHHHC-----CCeEEE-EEHHHHHHHH
Confidence 57899999999999975 44455555433 223444 4555664443
No 230
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.11 E-value=0.03 Score=55.92 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=34.3
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 217 (643)
.+.++++.|++|+|||.. +.++.+.+... + .-++++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThL-a~Ai~~~l~~~-----g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHL-AIAIGNELLKA-----G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHHc-----C-CeEEEEEHHHHHHHHHHHHh
Confidence 678999999999999986 45555555532 1 23555777788776655443
No 231
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.10 E-value=0.02 Score=56.97 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=32.0
Q ss_pred cCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccc
Q 006500 267 VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (643)
Q Consensus 267 ~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~ 313 (643)
.....++++|+||||.|... -...+...+...+....+++++-.+.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChh
Confidence 34566789999999988743 34455566666677777777776654
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.08 E-value=0.085 Score=48.28 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=26.3
Q ss_pred CCeeEEEEeCCchhccCC----------hHHHHHHHHHHCCCCceeEEEeeccc
Q 006500 270 DDLAVLILDEADRLLELG----------FSAEIHELVRLCPKRRQTMLFSATLT 313 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g----------~~~~~~~i~~~~~~~~q~i~~SAT~~ 313 (643)
....++||||.+.+.... ....+..+........-+++++...+
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 457799999999876432 23455555555544444455555444
No 233
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.03 E-value=0.013 Score=67.26 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
.+++-|.+++.. ....++|.|..|||||.+ ++.-+.+++... +.++.++|+|+.|+..|..+.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGC-GYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhc-CCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478899999865 346788999999999988 555555555321 23455799999999999999888877643
No 234
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.02 E-value=0.025 Score=64.55 Aligned_cols=71 Identities=25% Similarity=0.229 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006500 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (643)
Q Consensus 145 ~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l 219 (643)
-..+++-|.+++-. ...+++|.|..|||||.+ ++.-+..++... ...+.++|+|+.|+.+|..+.+.+...
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~v-l~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSV-LVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHH-HHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 35699999999853 335688999999999987 455555554332 233457999999999999888887764
No 235
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.98 E-value=0.054 Score=61.17 Aligned_cols=142 Identities=20% Similarity=0.237 Sum_probs=83.6
Q ss_pred CCHHHHH---HHHHHhcCC--CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 006500 148 PTPIQAA---CIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (643)
Q Consensus 148 ~~~~Q~~---~i~~~l~g~--d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~ 222 (643)
.|.-|.+ .+..++..+ -+++.|.-|=|||.+..|.+........ ..+++|++|+.+-+..+++.+.+-..+
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~----~~~iiVTAP~~~nv~~Lf~fa~~~l~~ 287 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG----SVRIIVTAPTPANVQTLFEFAGKGLEF 287 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC----CceEEEeCCCHHHHHHHHHHHHHhHHH
Confidence 4455555 455555543 5679999999999887766633322211 346999999999988888877765555
Q ss_pred CCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCC
Q 006500 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (643)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~ 302 (643)
.|..-.+........ ...-.....|=+-+|.... ..-++||||||=.+ ..+.+..++...
T Consensus 288 lg~~~~v~~d~~g~~--~~~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaI----plplL~~l~~~~--- 347 (758)
T COG1444 288 LGYKRKVAPDALGEI--REVSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAI----PLPLLHKLLRRF--- 347 (758)
T ss_pred hCCccccccccccce--eeecCCceeEEeeCcchhc-----------ccCCEEEEehhhcC----ChHHHHHHHhhc---
Confidence 554322222110000 0000011234455554432 11458999999876 355555665554
Q ss_pred ceeEEEeeccch
Q 006500 303 RQTMLFSATLTE 314 (643)
Q Consensus 303 ~q~i~~SAT~~~ 314 (643)
+.++||.|+..
T Consensus 348 -~rv~~sTTIhG 358 (758)
T COG1444 348 -PRVLFSTTIHG 358 (758)
T ss_pred -CceEEEeeecc
Confidence 34899999863
No 236
>PRK05642 DNA replication initiation factor; Validated
Probab=95.95 E-value=0.04 Score=54.45 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=30.1
Q ss_pred CeeEEEEeCCchhccC-ChHHHHHHHHHHCCCCceeEEEeeccch
Q 006500 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE 314 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~-g~~~~~~~i~~~~~~~~q~i~~SAT~~~ 314 (643)
+.++||||+.|.+... .+...+..+++.+......++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 3568999999987643 3456677787776654455777777654
No 237
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.94 E-value=0.038 Score=54.22 Aligned_cols=41 Identities=10% Similarity=0.231 Sum_probs=23.8
Q ss_pred eEEEEeCCchhccC-ChHHHHHHHHHHCCCCceeEEEeeccc
Q 006500 273 AVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLT 313 (643)
Q Consensus 273 ~~lVvDEah~l~~~-g~~~~~~~i~~~~~~~~q~i~~SAT~~ 313 (643)
.+|||||+|.+... .....+..+++........+++|++..
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 58999999988643 234555555544322222455666643
No 238
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.90 E-value=0.0039 Score=58.10 Aligned_cols=125 Identities=21% Similarity=0.195 Sum_probs=54.5
Q ss_pred EEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcC
Q 006500 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245 (643)
Q Consensus 166 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~ 245 (643)
++.|+-|-|||.+..+.+...+... ..+++|.+|+.+-+..+++.+..-....+++........ ........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~-----~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~ 72 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG-----KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG---QIIKLRFN 72 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------EEEE-SS--S-HHHHHCC-----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc-----CceEEEecCCHHHHHHHHHHHHhhccccccccccccccc---cccccccc
Confidence 5789999999987555543322211 136999999999888777766553332232220000000 00001112
Q ss_pred CCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccch
Q 006500 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (643)
Q Consensus 246 ~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~ 314 (643)
...|-+..|..+...- ...++||||||=.+. .+.+..++.. ...++||.|...
T Consensus 73 ~~~i~f~~Pd~l~~~~--------~~~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi~G 125 (177)
T PF05127_consen 73 KQRIEFVAPDELLAEK--------PQADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTIHG 125 (177)
T ss_dssp CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBSS
T ss_pred cceEEEECCHHHHhCc--------CCCCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeeccc
Confidence 4567777777764321 134689999998763 3444444433 235788888864
No 239
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.07 Score=55.97 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=26.5
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
...+.++||||||.|... -.+.+.++++..|...-+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 456889999999998643 2345666666655555555554
No 240
>PTZ00293 thymidine kinase; Provisional
Probab=95.73 E-value=0.053 Score=52.03 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=27.1
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr 206 (643)
|+=.++.|||+||||.- +|-.+.+..... .+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~ag-----~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTYSE-----KKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHHcC-----CceEEEEecc
Confidence 44457899999999976 566666554432 2488888863
No 241
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.64 E-value=0.026 Score=57.47 Aligned_cols=62 Identities=29% Similarity=0.280 Sum_probs=46.8
Q ss_pred HHCCCCCCCHHHHHHHHHHhcCC-CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 006500 141 EALGYSKPTPIQAACIPLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (643)
Q Consensus 141 ~~~g~~~~~~~Q~~~i~~~l~g~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La 209 (643)
.-..|..+++-|...+-.+..++ ++|++|.||||||+. +-++...... .-+++.+--|.+|-
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~~-----~eRvItiEDtaELq 213 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFIDS-----DERVITIEDTAELQ 213 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCCC-----cccEEEEeehhhhc
Confidence 33457789999999999998876 999999999999984 4444333222 22689998888883
No 242
>PRK06893 DNA replication initiation factor; Validated
Probab=95.64 E-value=0.047 Score=53.77 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=29.4
Q ss_pred CeeEEEEeCCchhccC-ChHHHHHHHHHHCCC-CceeEEEeeccchh
Q 006500 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCPK-RRQTMLFSATLTED 315 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~-g~~~~~~~i~~~~~~-~~q~i~~SAT~~~~ 315 (643)
+.++|||||.|.+... .+...+..+++.... ..+++++|++.++.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 4679999999988633 234456666655543 34567788877654
No 243
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.63 E-value=0.053 Score=59.24 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=26.9
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~ 212 (643)
+.+++.||+|+|||.. +..+.+.+.... ++.+++++ +...+...+
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~~---~~~~v~yi-~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEKN---PNAKVVYV-TSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHhC---CCCeEEEE-EHHHHHHHH
Confidence 4588999999999975 344444544321 13345555 444554443
No 244
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.57 E-value=0.13 Score=55.30 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=33.0
Q ss_pred eEEEEeCCchhcc-CChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHH
Q 006500 273 AVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (643)
Q Consensus 273 ~~lVvDEah~l~~-~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 322 (643)
++||||.|-++.. ......+..+.....+..-++.++||...+....+..
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 7899999976542 2244555666666666666788888887655554444
No 245
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.49 E-value=0.031 Score=64.42 Aligned_cols=70 Identities=20% Similarity=0.130 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 148 ~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
+++-|.+++.. ...+++|.|..|||||.+ ++.-+.+++... ...+.++|+|+.|+..|.++.+.+.....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~-~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNC-GYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68889998864 356899999999999988 555555555421 23455799999999999999888877653
No 246
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.48 E-value=0.072 Score=60.22 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=24.8
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
..++++||||+|.|....+ +.+.++++..+....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4578999999998876443 44555566655544444433
No 247
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.48 E-value=0.027 Score=65.32 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 146 ~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
..|++-|.+++.. ....++|.|..|||||.+ +..-+.+++... +.++.++|+|+.|+..|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999864 346799999999999988 555555555432 23456799999999999999998888754
No 248
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.45 E-value=0.065 Score=57.75 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=25.6
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~ 210 (643)
+.+++.|++|+|||.. +..+.+.+.... ++.+++++. ...+..
T Consensus 137 n~l~l~G~~G~GKThL-~~ai~~~l~~~~---~~~~v~yi~-~~~~~~ 179 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL-LHAIGNEILENN---PNAKVVYVS-SEKFTN 179 (405)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHHHhC---CCCcEEEEE-HHHHHH
Confidence 4578999999999975 344555554331 123466653 334433
No 249
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.45 E-value=0.053 Score=59.70 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhc-----C----CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006500 150 PIQAACIPLALT-----G----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (643)
Q Consensus 150 ~~Q~~~i~~~l~-----g----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~ 220 (643)
|+|+-++-.++. | +.+++.-+=|-|||......++..++.. +..+..++++++++.-|..+++.+..+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~--g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD--GEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC--CccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 568877777763 2 4578888999999976444444444433 2335679999999999999999888876
Q ss_pred hcCCceEEEEecCCChHHHHHHhc-CCCcEEEECchhHHHHHhc-cCccCCCCeeEEEEeCCchhccCChHHHHHHHHHH
Q 006500 221 QFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRN-SMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298 (643)
Q Consensus 221 ~~~~~~v~~~~g~~~~~~~~~~l~-~~~~Ivv~Tp~~L~~~l~~-~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~ 298 (643)
...+.-... ... .... ....|.....+.++..+.. .....-.+..++|+||+|.+.+......+..-...
T Consensus 79 ~~~~~l~~~-~~~-------~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~ 150 (477)
T PF03354_consen 79 EASPELRKR-KKP-------KIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGA 150 (477)
T ss_pred HhChhhccc-hhh-------hhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhcc
Confidence 542211000 000 0000 1122333222333222222 11222335679999999998764444443333333
Q ss_pred CCCCceeEEEe
Q 006500 299 CPKRRQTMLFS 309 (643)
Q Consensus 299 ~~~~~q~i~~S 309 (643)
. ++++++++|
T Consensus 151 r-~~pl~~~IS 160 (477)
T PF03354_consen 151 R-PNPLIIIIS 160 (477)
T ss_pred C-CCceEEEEe
Confidence 2 345555543
No 250
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.39 E-value=0.076 Score=52.53 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=25.3
Q ss_pred eeEEEEeCCchhccC-ChHHHHHHHHHHCCC-CceeEEEeeccch
Q 006500 272 LAVLILDEADRLLEL-GFSAEIHELVRLCPK-RRQTMLFSATLTE 314 (643)
Q Consensus 272 i~~lVvDEah~l~~~-g~~~~~~~i~~~~~~-~~q~i~~SAT~~~ 314 (643)
+.+|||||+|.+... .....+..+++.+.. ....+++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 458999999988642 345555566655432 2223555665443
No 251
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.38 E-value=0.3 Score=45.23 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=29.8
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccc
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~ 313 (643)
..++++|||+||.|... -.+.+.++++.-|....+|++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 56899999999988643 45667777777776666666665443
No 252
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.36 E-value=0.068 Score=57.96 Aligned_cols=89 Identities=25% Similarity=0.257 Sum_probs=57.6
Q ss_pred CCCHH-HHHHHHHCCCCCCCH----HHHHHHHHHhc--CCCeEEEcCCCchhHHHhHHhHHHHHhcCC-CCCCCeEEEEE
Q 006500 131 NLSRP-LLRACEALGYSKPTP----IQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLLYRP-KRIPAIRVLIL 202 (643)
Q Consensus 131 ~l~~~-l~~~l~~~g~~~~~~----~Q~~~i~~~l~--g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~vLil 202 (643)
++..+ |+..|....-.+++. +|.+-=..|.. ++-++|+|..|||||.+ .++=+..++++- ....+..|||+
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTti-ALHRvAyLlY~~R~~l~~k~vlvl 266 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTI-ALHRVAYLLYGYRGPLQAKPVLVL 266 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhH-HHHHHHHHHhccccccccCceEEE
Confidence 44444 556666654444443 44444333443 45677999999999988 455555555443 33344459999
Q ss_pred cCcHHHHHHHHHHHHHHh
Q 006500 203 TPTRELAVQVHSMIEKIA 220 (643)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~ 220 (643)
.|++.+..-+.+.+-.|+
T Consensus 267 ~PN~vFleYis~VLPeLG 284 (747)
T COG3973 267 GPNRVFLEYISRVLPELG 284 (747)
T ss_pred cCcHHHHHHHHHhchhhc
Confidence 999999888888877764
No 253
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.32 E-value=0.21 Score=58.12 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=27.0
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
..++++||||||+|...+ .+.+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 568899999999987543 445666666666655555544
No 254
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.38 Score=52.56 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=15.1
Q ss_pred CCCeEEEcCCCchhHHHh
Q 006500 162 GRDICGSAITGSGKTAAF 179 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~ 179 (643)
|+.++++|+||+|||+..
T Consensus 350 G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTI 367 (559)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 566779999999999863
No 255
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.22 E-value=0.043 Score=63.68 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 146 ~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
..|++-|.+++... ...++|.|..|||||.+ ++.-+.+++... +.++.++|+|+-|+..|..+.+.+..+..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRV-LVHRIAWLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35899999998643 45789999999999988 455555555322 23455799999999999999988887654
No 256
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.22 E-value=0.11 Score=53.56 Aligned_cols=66 Identities=30% Similarity=0.350 Sum_probs=43.9
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHh-cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 137 LRACEALGYSKPTPIQAACIPLAL-TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 137 ~~~l~~~g~~~~~~~Q~~~i~~~l-~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
+..+...|+ +++.|...+..++ .+++++++|+||||||.. +-.++..+...+ +..+++++-.+.+|
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~---~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD---PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC---CCceEEEEcCCCcc
Confidence 344444554 5677888887654 467899999999999964 555555443211 23368888888877
No 257
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.20 E-value=0.12 Score=56.27 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=57.5
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (643)
+.+++.|++|+|||.. +..+.+.+.... ++.+++++.+ ..+...+...+..- .
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~---~~~~v~yv~~-~~f~~~~~~~l~~~----~------------------ 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNF---SDLKVSYMSG-DEFARKAVDILQKT----H------------------ 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhC---CCCeEEEEEH-HHHHHHHHHHHHHh----h------------------
Confidence 4588999999999964 334444443221 2335666544 56655554444320 0
Q ss_pred hcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccC-ChHHHHHHHHHHCCCCceeEEEeeccch
Q 006500 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE 314 (643)
Q Consensus 243 l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~-g~~~~~~~i~~~~~~~~q~i~~SAT~~~ 314 (643)
.+...+... +.+.++|||||+|.+... .....+..+++.+......+++|+..++
T Consensus 195 ---------~~~~~~~~~--------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 195 ---------KEIEQFKNE--------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred ---------hHHHHHHHH--------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 001111111 234679999999987642 2345566666655433333455554444
No 258
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.12 Score=57.77 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=25.8
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
...++++||||+|.|....+ +.+.+.++.-+....+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEe
Confidence 35688999999999875444 34445555555555555544
No 259
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.10 E-value=0.17 Score=52.26 Aligned_cols=144 Identities=21% Similarity=0.207 Sum_probs=71.9
Q ss_pred CCCCCHHHHHHHHHHhc----CC---CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006500 145 YSKPTPIQAACIPLALT----GR---DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (643)
Q Consensus 145 ~~~~~~~Q~~~i~~~l~----g~---d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 217 (643)
+..+.|+|..++..+.. |+ -+++.||.|+||+.. ...+...++.......+ -|+.. ..+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l-A~~lA~~LlC~~~~~~~-----~c~~c-------~~~~ 68 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV-ALALAEHVLASGPDPAA-----AQRTR-------QLIA 68 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH-HHHHHHHHhCCCCCCCC-----cchHH-------HHHh
Confidence 35678888888876653 33 588999999999975 45555566543211100 11111 1111
Q ss_pred HHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHH
Q 006500 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297 (643)
Q Consensus 218 ~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~ 297 (643)
. ..++++.+.......... +....|.|-.--.+...+... ......+++|||+||.|... -.+.+.++++
T Consensus 69 ~-g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~--p~~g~~kV~iI~~ae~m~~~-AaNaLLKtLE 138 (319)
T PRK08769 69 A-GTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALT--PQYGIAQVVIVDPADAINRA-ACNALLKTLE 138 (319)
T ss_pred c-CCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhC--cccCCcEEEEeccHhhhCHH-HHHHHHHHhh
Confidence 1 112333222101110000 000112222212233323221 12356889999999998643 4555666777
Q ss_pred HCCCCceeEEEeec
Q 006500 298 LCPKRRQTMLFSAT 311 (643)
Q Consensus 298 ~~~~~~q~i~~SAT 311 (643)
.-|....+|++|..
T Consensus 139 EPp~~~~fiL~~~~ 152 (319)
T PRK08769 139 EPSPGRYLWLISAQ 152 (319)
T ss_pred CCCCCCeEEEEECC
Confidence 76666666666543
No 260
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.07 E-value=0.11 Score=56.29 Aligned_cols=47 Identities=11% Similarity=0.215 Sum_probs=27.7
Q ss_pred CeeEEEEeCCchhccCC-hHHHHHHHHHHCC-CCceeEEEeeccchhHH
Q 006500 271 DLAVLILDEADRLLELG-FSAEIHELVRLCP-KRRQTMLFSATLTEDVD 317 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~g-~~~~~~~i~~~~~-~~~q~i~~SAT~~~~~~ 317 (643)
+.++|+|||+|.+.... ....+..+++.+. ...|+|+.|-+.+..+.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 46799999999986532 3445555555432 34455555544454443
No 261
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.06 E-value=0.3 Score=49.13 Aligned_cols=130 Identities=18% Similarity=0.132 Sum_probs=68.0
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEE-cCc-H-HHHHHHHHHHHHHhhcCCceEEEEecCCChH
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL-TPT-R-ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil-~Pt-r-~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~ 237 (643)
.+..+++.|++|+|||..+.+-+ ..+... +.++.++ +-+ | ..+.||... +...++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~-~~l~~~-----~~~v~~i~~D~~ri~~~~ql~~~----~~~~~~~~~~-------- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMA-WQFHGK-----KKTVGFITTDHSRIGTVQQLQDY----VKTIGFEVIA-------- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHH-HHHHHc-----CCeEEEEecCCCCHHHHHHHHHH----hhhcCceEEe--------
Confidence 34667799999999998644332 222221 1224333 322 2 344454433 2222332221
Q ss_pred HHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhcc-CChHHHHHHHHHHCCCCceeEEEeeccch-h
Q 006500 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTE-D 315 (643)
Q Consensus 238 ~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~-~g~~~~~~~i~~~~~~~~q~i~~SAT~~~-~ 315 (643)
..+|..|...+... .....+++||||-+-+... ......+..++....+..-.+.+|||... +
T Consensus 136 -------------~~~~~~l~~~l~~l--~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 136 -------------VRDEAAMTRALTYF--KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred -------------cCCHHHHHHHHHHH--HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 12444554444321 1123578999999987642 22344455555555444446779998764 5
Q ss_pred HHHHHHHh
Q 006500 316 VDELIKLS 323 (643)
Q Consensus 316 ~~~~~~~~ 323 (643)
....++.|
T Consensus 201 ~~~~~~~f 208 (270)
T PRK06731 201 MIEIITNF 208 (270)
T ss_pred HHHHHHHh
Confidence 55665554
No 262
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.04 E-value=0.25 Score=52.82 Aligned_cols=131 Identities=11% Similarity=0.105 Sum_probs=65.1
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcC--cHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHH
Q 006500 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP--TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~P--tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (643)
-++++|++|+|||++ +.-+...+... +.++++++. .|..|.. +++.++...++.+.....+..+...
T Consensus 102 vi~lvG~~GvGKTTt-aaKLA~~l~~~-----G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~dp~~i-- 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTT-CTKLAYYYQRK-----GFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESDPVKI-- 170 (429)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHHHHC-----CCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCCHHHH--
Confidence 356999999999976 33333333222 123555443 3544443 3444554456655433332221100
Q ss_pred HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhcc-CChHHHHHHHHHHCCCCceeEEEeeccchhHHHHH
Q 006500 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 320 (643)
Q Consensus 242 ~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~-~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 320 (643)
..+.+.. ..-..+++||||=+-++-. ......+..+.....+..-+++++||...+....+
T Consensus 171 ---------------~~~~l~~---~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a 232 (429)
T TIGR01425 171 ---------------ASEGVEK---FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA 232 (429)
T ss_pred ---------------HHHHHHH---HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH
Confidence 0001111 0012356777777766442 12344555555555555567888888876655555
Q ss_pred HHh
Q 006500 321 KLS 323 (643)
Q Consensus 321 ~~~ 323 (643)
..|
T Consensus 233 ~~F 235 (429)
T TIGR01425 233 KAF 235 (429)
T ss_pred HHH
Confidence 443
No 263
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.04 E-value=0.2 Score=63.92 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 006500 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~ 224 (643)
.+++-|..++..++.. +-.++.|+.|+|||.+ +-.++..+.. .+.+|++++||.-.+.++.+.....+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~-----~G~~V~~lAPTgrAA~~L~e~~g~~A---- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE-----QGYEIQIITAGSLSAQELRQKIPRLA---- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh-----cCCeEEEEeCCHHHHHHHHHHhcchh----
Confidence 5899999999999886 4567999999999976 4444444322 24469999999887766655422110
Q ss_pred ceEEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHC-CCCc
Q 006500 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRR 303 (643)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~-~~~~ 303 (643)
..+. .....+.. ..-..|..+|+ .. ...+..-++||||||-.+.. ..+..++... +...
T Consensus 499 ---~Ti~------~~l~~l~~--~~~~~tv~~fl---~~--~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 499 ---STFI------TWVKNLFN--DDQDHTVQGLL---DK--SSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNS 558 (1960)
T ss_pred ---hhHH------HHHHhhcc--cccchhHHHhh---cc--cCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCC
Confidence 0000 00000000 01122222332 11 23345677999999996643 2344555544 4567
Q ss_pred eeEEEeec
Q 006500 304 QTMLFSAT 311 (643)
Q Consensus 304 q~i~~SAT 311 (643)
++|++.=+
T Consensus 559 rvVlvGD~ 566 (1960)
T TIGR02760 559 KLILLNDS 566 (1960)
T ss_pred EEEEEcCh
Confidence 77777654
No 264
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.23 Score=52.54 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=23.3
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEE
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~ 308 (643)
....++||||+|.|....+ +.+.+.+...|....+|+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 4578999999999865333 2344445554444444443
No 265
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.02 E-value=0.35 Score=54.03 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHhc---CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 146 SKPTPIQAACIPLALT---GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 146 ~~~~~~Q~~~i~~~l~---g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
.-|+|.=.+-|..++. .+-.++.+|=|-|||.+..+.+. .+... .+.+|+|++|...-+.++++.+..+..
T Consensus 168 ~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f----~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 168 EAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF----LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh----cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3445555555555554 46788899999999987544443 33321 135799999999999999888877765
No 266
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.16 Score=53.51 Aligned_cols=134 Identities=18% Similarity=0.152 Sum_probs=64.6
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCC-----eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHH
Q 006500 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPA-----IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~-----~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~ 238 (643)
-.|+.||.|+||+.. ...+...++........ +..+.+++.-..|.++ .. ..++++.+ +........
T Consensus 43 A~Lf~Gp~G~GK~~l-A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i----~~-~~HPDl~~--i~~~~~~~~ 114 (365)
T PRK07471 43 AWLIGGPQGIGKATL-AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI----AA-GAHGGLLT--LERSWNEKG 114 (365)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH----Hc-cCCCCeEE--Eeccccccc
Confidence 588999999999976 45556666654321111 2234445553333332 21 12233332 221100000
Q ss_pred HHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeecc
Q 006500 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (643)
Q Consensus 239 ~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~ 312 (643)
. +....|.|-.--.+...+.. ......+.++||||+|.|... -.+.+.+.++..|...-+|++|..+
T Consensus 115 --~--~~~~~I~VdqiR~l~~~~~~--~~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 115 --K--RLRTVITVDEVRELISFFGL--TAAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred --c--cccccccHHHHHHHHHHhCc--CcccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 0 00122333222223333322 123456889999999987532 3445556666555555455544443
No 267
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.23 Score=51.92 Aligned_cols=17 Identities=41% Similarity=0.347 Sum_probs=14.5
Q ss_pred CCCeEEEcCCCchhHHH
Q 006500 162 GRDICGSAITGSGKTAA 178 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~ 178 (643)
++-++++||+|+|||++
T Consensus 206 ~~ii~lvGptGvGKTTt 222 (407)
T PRK12726 206 HRIISLIGQTGVGKTTT 222 (407)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45677999999999986
No 268
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.98 E-value=0.29 Score=49.43 Aligned_cols=130 Identities=20% Similarity=0.291 Sum_probs=63.5
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc--CcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT--PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~--Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~ 240 (643)
+-++++|++|+|||++ +.-+...+... +.+++++. +.|.-+. +.+..|+...++.+.....+..
T Consensus 73 ~vi~l~G~~G~GKTTt-~akLA~~l~~~-----g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~d----- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTT-IAKLANKLKKQ-----GKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGAD----- 138 (272)
T ss_pred eEEEEECCCCCcHHHH-HHHHHHHHHhc-----CCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCC-----
Confidence 3466889999999986 33333333222 23455554 3344332 3344444444544332111111
Q ss_pred HHhcCCCcEEEECchh-HHHHHhccCccCCCCeeEEEEeCCchhcc-CChHHHHHHHHHHCC------CCceeEEEeecc
Q 006500 241 TALRSMPDIVVATPGR-MIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCP------KRRQTMLFSATL 312 (643)
Q Consensus 241 ~~l~~~~~Ivv~Tp~~-L~~~l~~~~~~~l~~i~~lVvDEah~l~~-~g~~~~~~~i~~~~~------~~~q~i~~SAT~ 312 (643)
|.. +.+.+.. .....+++||||=+-++.. ......+..+....+ ..--++.++||.
T Consensus 139 -------------p~~~~~~~l~~---~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~ 202 (272)
T TIGR00064 139 -------------PAAVAFDAIQK---AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT 202 (272)
T ss_pred -------------HHHHHHHHHHH---HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC
Confidence 111 1111111 0123466788887776542 223445555555544 445578888887
Q ss_pred chhHHHHHHH
Q 006500 313 TEDVDELIKL 322 (643)
Q Consensus 313 ~~~~~~~~~~ 322 (643)
..+....+..
T Consensus 203 ~~~~~~~~~~ 212 (272)
T TIGR00064 203 GQNALEQAKV 212 (272)
T ss_pred CHHHHHHHHH
Confidence 6554444433
No 269
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.97 E-value=0.098 Score=52.64 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=14.3
Q ss_pred CCeEEEcCCCchhHHH
Q 006500 163 RDICGSAITGSGKTAA 178 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~ 178 (643)
.++++.||+|+|||..
T Consensus 43 ~~vll~GppGtGKTtl 58 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTV 58 (261)
T ss_pred ceEEEEcCCCCCHHHH
Confidence 5789999999999975
No 270
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.96 E-value=0.25 Score=46.65 Aligned_cols=48 Identities=27% Similarity=0.115 Sum_probs=29.8
Q ss_pred eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006500 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l 219 (643)
+++.|++|+|||... +-++...... +.++++++.. +...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~-~~~~~~~~~~-----g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFA-LQFLYAGLAR-----GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHH-HHHHHHHHHC-----CCcEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999763 4433333332 2347777653 5556666666554
No 271
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.94 E-value=0.085 Score=54.41 Aligned_cols=64 Identities=31% Similarity=0.304 Sum_probs=43.2
Q ss_pred HHHCCCCCCCHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 006500 140 CEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (643)
Q Consensus 140 l~~~g~~~~~~~Q~~~i~~~l~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La 209 (643)
+...|. +++.|...+..++. +.+++++|+||||||+. +-.++..+...+ +..+++++=.+.||.
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~---~~~rivtiEd~~El~ 187 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA---PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC---CCceEEEecCCcccc
Confidence 334443 67788877766655 56899999999999975 455555553322 123678888788873
No 272
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.90 E-value=0.16 Score=62.49 Aligned_cols=64 Identities=25% Similarity=0.201 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 006500 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~ 212 (643)
.+++-|.+++..++.+ +-+++.|..|+|||++ +-.++..+..-. ...+..++.++||--.+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~-l~~i~~~~~~l~-e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ-FRAVMSAVNMLP-ESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH-HHHHHHHHHHHh-hccCceEEEEechHHHHHHH
Confidence 6899999999999975 6678999999999986 333333221100 11234688999998876655
No 273
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.86 E-value=0.17 Score=57.88 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=13.8
Q ss_pred CCeEEEcCCCchhHHHh
Q 006500 163 RDICGSAITGSGKTAAF 179 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~ 179 (643)
+-+.+.||||+|||++.
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34569999999999863
No 274
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.85 E-value=0.18 Score=56.63 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=26.3
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
+...+++||||+|.|.... .+.+.+.++..|....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4568899999999986432 344555566655555555544
No 275
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.85 E-value=0.051 Score=59.91 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=26.2
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
..++++||||||.|....+ +.+.++++..|....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998875433 44555666666665555544
No 276
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.84 E-value=0.19 Score=62.57 Aligned_cols=64 Identities=23% Similarity=0.177 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 006500 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~ 212 (643)
.+++-|..++..++.+ +-++|.|..|+|||++ +-.++..+.... ...+.+++.++||--.|..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~-~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLP-ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhh-cccCceEEEECCcHHHHHHH
Confidence 5899999999999986 4577999999999986 444444432111 11244688999998876654
No 277
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.82 E-value=0.26 Score=50.50 Aligned_cols=66 Identities=33% Similarity=0.325 Sum_probs=42.6
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 137 LRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 137 ~~~l~~~g~~~~~~~Q~~~i~~~l~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
+..+...|. +++.|...+..++. +++++++|+||||||+. +-.++..+... .+..+++++=.+.++
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~---~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN---DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc---CCCceEEEECCchhh
Confidence 334444443 55666666665554 57999999999999975 44455444321 123368888888887
No 278
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.77 E-value=0.31 Score=52.11 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (643)
|.-+.+.||||+|||++...-+-..+.... ...-.+|.+.+--.+. .+.+..++...++.+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~---~~~v~~i~~d~~riga--lEQL~~~a~ilGvp~~~v----------- 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG---ADKVALLTTDSYRIGG--HEQLRIYGKLLGVSVRSI----------- 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC---CCeEEEEecCCcchhH--HHHHHHHHHHcCCceecC-----------
Confidence 445669999999999863322211221111 1112455565533222 233444444445443322
Q ss_pred HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhcc-CChHHHHHHHHHHCCCCceeEEEeeccchh-HHHH
Q 006500 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTED-VDEL 319 (643)
Q Consensus 242 ~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~-~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~-~~~~ 319 (643)
.++..+...+.. +.+.++++||.+-+.-. ......+..+....+....++++|||.... +.+.
T Consensus 255 ----------~~~~dl~~al~~-----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 255 ----------KDIADLQLMLHE-----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ----------CCHHHHHHHHHH-----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 223233222222 34566788888643221 112233333322223334568899997644 4444
Q ss_pred HHHh
Q 006500 320 IKLS 323 (643)
Q Consensus 320 ~~~~ 323 (643)
+..+
T Consensus 320 ~~~f 323 (420)
T PRK14721 320 ISAY 323 (420)
T ss_pred HHHh
Confidence 4443
No 279
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.75 E-value=0.043 Score=48.40 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=12.6
Q ss_pred eEEEcCCCchhHHH
Q 006500 165 ICGSAITGSGKTAA 178 (643)
Q Consensus 165 ~l~~a~TGsGKT~~ 178 (643)
+++.||.|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999975
No 280
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.75 E-value=0.12 Score=55.41 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHhcCCCeEEEcCCCchhHHHh
Q 006500 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAF 179 (643)
Q Consensus 148 ~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~ 179 (643)
+-......+..+..++++++.|++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 34455666777778999999999999999763
No 281
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.22 Score=52.47 Aligned_cols=27 Identities=33% Similarity=0.268 Sum_probs=21.2
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcC
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYR 190 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~ 190 (643)
.++++-|+||+|||.+ .-.++..+...
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHhh
Confidence 4699999999999987 56666666544
No 282
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.70 E-value=0.14 Score=54.93 Aligned_cols=143 Identities=20% Similarity=0.198 Sum_probs=76.9
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHH-HHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHH
Q 006500 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE-LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~-La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (643)
-.++.|..|||||.+..+-++..+.... ++.++||+-|+.. |..-++..+.......++....-...... ...
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~---~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~---~i~ 76 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK---KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM---EIK 76 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC---CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc---EEE
Confidence 3578999999999888877777776641 2356899999986 55556666665544334322111111100 000
Q ss_pred hcC-CCcEEEECc-hhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCC--CCceeEEEeeccchhHHH
Q 006500 243 LRS-MPDIVVATP-GRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP--KRRQTMLFSATLTEDVDE 318 (643)
Q Consensus 243 l~~-~~~Ivv~Tp-~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~--~~~q~i~~SAT~~~~~~~ 318 (643)
+.. +..|++..- ...-. + .....+.++.+|||..+... .+.+++..+. ...+.+++|.||.....-
T Consensus 77 ~~~~g~~i~f~g~~d~~~~-i-----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 77 ILNTGKKFIFKGLNDKPNK-L-----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred ecCCCeEEEeecccCChhH-h-----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 111 334555432 11111 1 12234689999999988543 2333332222 222248888888653333
Q ss_pred HHHH
Q 006500 319 LIKL 322 (643)
Q Consensus 319 ~~~~ 322 (643)
+...
T Consensus 147 ~~~~ 150 (396)
T TIGR01547 147 VKKR 150 (396)
T ss_pred HHHH
Confidence 3333
No 283
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.68 E-value=0.17 Score=57.95 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=17.9
Q ss_pred Ce-EEEcCCCchhHHHhHHhHHHHHh
Q 006500 164 DI-CGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 164 d~-l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
++ +|.|+||+|||++ ...++..+.
T Consensus 782 nvLYIyG~PGTGKTAT-VK~VLrELq 806 (1164)
T PTZ00112 782 QILYISGMPGTGKTAT-VYSVIQLLQ 806 (1164)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 45 4999999999987 555555553
No 284
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.67 E-value=0.4 Score=49.33 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=19.3
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
++++++.|++|+|||.. +..+.+.+.
T Consensus 156 ~~gl~L~G~~G~GKThL-a~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL-LAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 46799999999999976 344455554
No 285
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.66 E-value=0.25 Score=55.77 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=25.8
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
+..++++||||+|.|.... .+.+.+++...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999876432 344555666655555555544
No 286
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.65 E-value=0.17 Score=49.65 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=24.8
Q ss_pred eeEEEEeCCchhccCChHHHHHHHHHHCCCCce-eEEEeeccch
Q 006500 272 LAVLILDEADRLLELGFSAEIHELVRLCPKRRQ-TMLFSATLTE 314 (643)
Q Consensus 272 i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q-~i~~SAT~~~ 314 (643)
.++|||||+|.+... -...+..+++....... +++++++.++
T Consensus 91 ~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 91 AELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred CCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 458999999987543 23444455544333333 4677776543
No 287
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.64 E-value=0.27 Score=53.66 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=25.6
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeecc
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~ 312 (643)
...++++||||+|.|....+ +.+.+.++..|....+|+ .+|-
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIl-atte 155 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFIL-ATTE 155 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEE-EeCC
Confidence 35788999999998865433 344555555554444444 3343
No 288
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.64 E-value=0.19 Score=52.08 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=25.5
Q ss_pred CeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
..++|||||+|.+........+..+++..+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 356899999998843334555666677666666555533
No 289
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.59 E-value=0.26 Score=56.97 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=24.1
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEE
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~ 308 (643)
..++++||||||.|... -.+.+.++++..|....+|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 46789999999998533 334455555555555544443
No 290
>PRK09183 transposase/IS protein; Provisional
Probab=94.58 E-value=0.36 Score=48.41 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=17.3
Q ss_pred HhcCCCeEEEcCCCchhHHH
Q 006500 159 ALTGRDICGSAITGSGKTAA 178 (643)
Q Consensus 159 ~l~g~d~l~~a~TGsGKT~~ 178 (643)
+-.+.++++.||+|+|||..
T Consensus 99 i~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHH
Confidence 44678999999999999975
No 291
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=0.073 Score=55.28 Aligned_cols=41 Identities=22% Similarity=0.051 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHhcC----CCeEEEcCCCchhHHHhHHhHHHHHhc
Q 006500 148 PTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLLY 189 (643)
Q Consensus 148 ~~~~Q~~~i~~~l~g----~d~l~~a~TGsGKT~~~~l~~l~~l~~ 189 (643)
+.|+|...+..++.. +-+++.||.|.|||.. ...+...++.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~-A~~~A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRAL-AERLAAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHH-HHHHHHHHcC
Confidence 468888888877764 3588999999999975 4445555554
No 292
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.54 E-value=0.32 Score=53.91 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=26.1
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
.....++||||||+|... -.+.+..+++..|....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 346789999999998653 3345556666655555555544
No 293
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.54 E-value=0.12 Score=54.85 Aligned_cols=180 Identities=17% Similarity=0.228 Sum_probs=92.6
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 006500 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 215 (643)
Q Consensus 136 l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 215 (643)
++..++.. +..+...|.++.-..-.|+- .+.|-.|||||...++- +.++... .+..+++|.+=|+.|+.++...
T Consensus 152 ~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~K-aa~lh~k---nPd~~I~~Tfftk~L~s~~r~l 225 (660)
T COG3972 152 LLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHK-AAELHSK---NPDSRIAFTFFTKILASTMRTL 225 (660)
T ss_pred HHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHH-HHHHhcC---CCCceEEEEeehHHHHHHHHHH
Confidence 44444332 44566678777544444544 57788999999863333 3333322 2345899999999999999988
Q ss_pred HHHHhhc--------CCceEEEEecCCChHHHHHHhcCC---CcEEEECc----hhHHHHHhccCccCCCCeeEEEEeCC
Q 006500 216 IEKIAQF--------TDIRCCLVVGGLSTKMQETALRSM---PDIVVATP----GRMIDHLRNSMSVDLDDLAVLILDEA 280 (643)
Q Consensus 216 ~~~l~~~--------~~~~v~~~~g~~~~~~~~~~l~~~---~~Ivv~Tp----~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (643)
+.+|+-. ..+-++.-.||............. ..+-++-- ..++..+-+. .-....+++|.|||+
T Consensus 226 v~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~-~~~~~~yD~ilIDE~ 304 (660)
T COG3972 226 VPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIAD-INNKKAYDYILIDES 304 (660)
T ss_pred HHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHh-hhccccccEEEeccc
Confidence 8887631 123333334444332221111111 11212111 1122222111 123567899999999
Q ss_pred chhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHHhcCCCeEE
Q 006500 281 DRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 330 (643)
Q Consensus 281 h~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~ 330 (643)
.- |......++-.+.++.+.|.... .++..+....|..|..+
T Consensus 305 QD-----FP~~F~~Lcf~~tkd~KrlvyAy---DelQnls~~~m~ppe~i 346 (660)
T COG3972 305 QD-----FPQSFIDLCFMVTKDKKRLVYAY---DELQNLSNVKMRPPEEI 346 (660)
T ss_pred cc-----CCHHHHHHHHHHhcCcceEEEeh---HhhhcccccCCCCHHHh
Confidence 86 44444444444333333344332 34444444445444333
No 294
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.53 E-value=0.22 Score=54.77 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=14.6
Q ss_pred CCeEEEcCCCchhHHHh
Q 006500 163 RDICGSAITGSGKTAAF 179 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~ 179 (643)
+.+|++||.|+|||.++
T Consensus 44 ~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSA 60 (507)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36899999999999863
No 295
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.52 E-value=0.26 Score=53.48 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=23.8
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcC
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~P 204 (643)
+.+++.|++|+|||.. +..+.+.+.... ++.+++++..
T Consensus 131 n~l~lyG~~G~GKTHL-l~ai~~~l~~~~---~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL-LQSIGNYVVQNE---PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHH-HHHHHHHHHHhC---CCCeEEEEEH
Confidence 4688999999999975 344444444321 1235666653
No 296
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.45 E-value=0.16 Score=54.96 Aligned_cols=15 Identities=27% Similarity=0.120 Sum_probs=13.4
Q ss_pred CeEEEcCCCchhHHH
Q 006500 164 DICGSAITGSGKTAA 178 (643)
Q Consensus 164 d~l~~a~TGsGKT~~ 178 (643)
.+|++||.|+|||.+
T Consensus 42 a~Lf~GP~GtGKTTl 56 (484)
T PRK14956 42 AYIFFGPRGVGKTTI 56 (484)
T ss_pred EEEEECCCCCCHHHH
Confidence 369999999999986
No 297
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.43 E-value=0.11 Score=57.94 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHH-HHHHHHhhcC
Q 006500 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH-SMIEKIAQFT 223 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~-~~~~~l~~~~ 223 (643)
..+|||.+.+..+-.. +.++++.++-+|||.+ ++.++-...... +..+|++.||..+|..+. ..+..+....
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~-~~n~~g~~i~~~----P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTEL-LLNWIGYSIDQD----PGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHH-HHhhceEEEEeC----CCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 5789999999887664 5788999999999986 344433332221 234999999999999775 4444443322
Q ss_pred CceEEEEec----CCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc
Q 006500 224 DIRCCLVVG----GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (643)
Q Consensus 224 ~~~v~~~~g----~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~ 284 (643)
+.--..+.. ..........+. +..+.++.... ...+.-..+.++++||.|...
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S-------~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANS-------PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCC-------CcccccCCcCEEEEechhhcc
Confidence 210011111 111111122222 23344433111 112233457899999999985
No 298
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.43 E-value=0.24 Score=51.76 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=24.8
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeec
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT 311 (643)
....+|||||+|.+... ....+..++...+....+|+ +++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeC
Confidence 45679999999987532 34455566666555555444 443
No 299
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.41 E-value=0.53 Score=52.71 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=25.3
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
....+++||||||.|.... .+.+.++++..|...-+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3568899999999987543 334455556555544444444
No 300
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.39 E-value=0.22 Score=55.42 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=28.2
Q ss_pred CeeEEEEeCCchhccCC-hHHHHHHHHHHCCC-CceeEEEeeccchhH
Q 006500 271 DLAVLILDEADRLLELG-FSAEIHELVRLCPK-RRQTMLFSATLTEDV 316 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~g-~~~~~~~i~~~~~~-~~q~i~~SAT~~~~~ 316 (643)
++++||||+.|.+.... ....+..+++.+.. ..++|+.|-..+..+
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 46799999999886533 34556666665544 345555444444443
No 301
>PLN03025 replication factor C subunit; Provisional
Probab=94.37 E-value=0.5 Score=49.07 Aligned_cols=40 Identities=15% Similarity=0.298 Sum_probs=24.7
Q ss_pred CeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeecc
Q 006500 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~ 312 (643)
.++++||||+|.|.... ...+..++...+.... ++++++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~-~il~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTR-FALACNT 138 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCce-EEEEeCC
Confidence 57899999999986432 4445555555444443 4444443
No 302
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.32 E-value=0.54 Score=50.02 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=30.1
Q ss_pred CeeEEEEeCCchhc-cCChHHHHHHHHHHCC---CCceeEEEeeccch-hHHHHHHHh
Q 006500 271 DLAVLILDEADRLL-ELGFSAEIHELVRLCP---KRRQTMLFSATLTE-DVDELIKLS 323 (643)
Q Consensus 271 ~i~~lVvDEah~l~-~~g~~~~~~~i~~~~~---~~~q~i~~SAT~~~-~~~~~~~~~ 323 (643)
..++||||=+-+.. +......+..++.... +...++.+|||... ++......+
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 46789999776543 2223344455554432 22356888999887 444444433
No 303
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.31 E-value=0.19 Score=56.70 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=24.4
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEE
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~ 308 (643)
..++++||||||+|.... .+.+.++++.-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 468899999999887543 34455566655544444443
No 304
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.28 E-value=0.13 Score=50.33 Aligned_cols=107 Identities=19% Similarity=0.206 Sum_probs=58.4
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHh
Q 006500 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l 243 (643)
-+++.|++|+|||-. +..+.+.+.... ++.+|+++.. .+........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~---~~~~v~y~~~-~~f~~~~~~~~~~------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH---PGKRVVYLSA-EEFIREFADALRD------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC---TTS-EEEEEH-HHHHHHHHHHHHT-------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc---ccccceeecH-HHHHHHHHHHHHc-------------------------
Confidence 378999999999974 444444444321 2334666543 3554443333332
Q ss_pred cCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccC-ChHHHHHHHHHHCC-CCceeEEEeeccchhH
Q 006500 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCP-KRRQTMLFSATLTEDV 316 (643)
Q Consensus 244 ~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~-g~~~~~~~i~~~~~-~~~q~i~~SAT~~~~~ 316 (643)
.....+.+.+ ..+++|+||..|.+... .....+..+++.+. ...++|+.|...|.++
T Consensus 86 --------~~~~~~~~~~--------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 --------GEIEEFKDRL--------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp --------TSHHHHHHHH--------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred --------ccchhhhhhh--------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 0112232222 34679999999998753 23455566665543 3456666665666543
No 305
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.25 E-value=0.65 Score=47.34 Aligned_cols=129 Identities=21% Similarity=0.292 Sum_probs=72.2
Q ss_pred eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcC-c-HHHHHHHHHHHHHHhhcCCceEEEE-ecCCChHHHHH
Q 006500 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP-T-RELAVQVHSMIEKIAQFTDIRCCLV-VGGLSTKMQET 241 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~P-t-r~La~Q~~~~~~~l~~~~~~~v~~~-~g~~~~~~~~~ 241 (643)
++++|..|+|||++ +.=|.+++... +.+|++.+- | |+-|. ++++.|+...++.+..- .|+.+..
T Consensus 142 il~vGVNG~GKTTT--IaKLA~~l~~~----g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAa---- 208 (340)
T COG0552 142 ILFVGVNGVGKTTT--IAKLAKYLKQQ----GKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAA---- 208 (340)
T ss_pred EEEEecCCCchHhH--HHHHHHHHHHC----CCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHH----
Confidence 56899999999986 44444444432 224555443 2 34433 44555665567766542 2222111
Q ss_pred HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccC-ChHHHHHHHHHHCCCCce-----eE-EEeeccch
Q 006500 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQ-----TM-LFSATLTE 314 (643)
Q Consensus 242 ~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~-g~~~~~~~i~~~~~~~~q-----~i-~~SAT~~~ 314 (643)
...+.+... .-.++++|++|=|-||-+. +.-..+.+|.+.+.+... ++ .+=||..+
T Consensus 209 --------------VafDAi~~A---kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 209 --------------VAFDAIQAA---KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred --------------HHHHHHHHH---HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 112223221 1235778888888888753 356777777776655432 44 44899887
Q ss_pred hHHHHHHHh
Q 006500 315 DVDELIKLS 323 (643)
Q Consensus 315 ~~~~~~~~~ 323 (643)
+-..-++.|
T Consensus 272 nal~QAk~F 280 (340)
T COG0552 272 NALSQAKIF 280 (340)
T ss_pred hHHHHHHHH
Confidence 665555443
No 306
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.22 E-value=0.12 Score=57.88 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=25.6
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeec
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT 311 (643)
..++++||||+|+|.... .+.+.++++..|....+|+ ++|
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FIL-aTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLF-ATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEE-EEC
Confidence 467899999999886543 3445556666555554444 444
No 307
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.19 E-value=0.13 Score=48.54 Aligned_cols=146 Identities=12% Similarity=0.093 Sum_probs=77.5
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHH
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~ 240 (643)
....+++..++|.|||.+.+--++..+-. +.+|+|+.=.+--. -+.+...+....++.+...-.+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~------G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~~g~~~~~~~-- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH------GKKVGVVQFIKGAW--STGERNLLEFGGGVEFHVMGTGFTWET-- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC------CCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEECCCCCcccC--
Confidence 45678899999999998865555555432 34577765333210 011222222212333222111100000
Q ss_pred HHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCCh--HHHHHHHHHHCCCCceeEEEeeccchhHHH
Q 006500 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDE 318 (643)
Q Consensus 241 ~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~--~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~ 318 (643)
.....-+......+..... .+.-..+++||+||.-..+++|+ ...+..++...|...-+|+..-.+|+++.+
T Consensus 91 ----~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 91 ----QDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred ----CCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 0000000001111222211 12235689999999999998886 467777888877777777777777777776
Q ss_pred HHHH
Q 006500 319 LIKL 322 (643)
Q Consensus 319 ~~~~ 322 (643)
.+..
T Consensus 165 ~ADl 168 (191)
T PRK05986 165 AADL 168 (191)
T ss_pred hCch
Confidence 6553
No 308
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.15 E-value=0.25 Score=49.79 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHh---c-CC-CeEEEcCCCchhHHH
Q 006500 147 KPTPIQAACIPLAL---T-GR-DICGSAITGSGKTAA 178 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l---~-g~-d~l~~a~TGsGKT~~ 178 (643)
.+++.+.+++..+. . +. .+++.|++|+|||+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 35566666665543 2 23 577999999999986
No 309
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.14 E-value=0.31 Score=54.84 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=25.2
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
...++++||||+|.|... -.+.+.++++..|...-+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 456889999999987643 3345556666555544444433
No 310
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.14 E-value=0.3 Score=56.28 Aligned_cols=76 Identities=20% Similarity=0.206 Sum_probs=64.0
Q ss_pred CCceEEEEeCCHHHHHHHHHHH----hhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccc-cccCCCCCccEEE
Q 006500 369 FTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVI 443 (643)
Q Consensus 369 ~~~~~LIF~~s~~~~~~l~~~L----~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~-~~GlDi~~v~~VI 443 (643)
.+.+++|.+||...+......+ ...++++..+||+++..+|..++..+.+|..+|+|+|... ...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 3568999999999888766554 4457999999999999999999999999999999999744 4567788899888
Q ss_pred e
Q 006500 444 N 444 (643)
Q Consensus 444 ~ 444 (643)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 311
>CHL00181 cbbX CbbX; Provisional
Probab=94.13 E-value=0.29 Score=49.90 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.1
Q ss_pred CCCeEEEcCCCchhHHHh
Q 006500 162 GRDICGSAITGSGKTAAF 179 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~ 179 (643)
|.++++.||+|+|||..+
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999863
No 312
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.11 E-value=4.8 Score=43.22 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=55.2
Q ss_pred CCceEEEEeCCHHHHHHHHHHHhhc----CCceEEccCCCCHHHHHHHHHHhhcCCceEEEeccc-------ccccCCCC
Q 006500 369 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-------AARGLDII 437 (643)
Q Consensus 369 ~~~~~LIF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~-------~~~GlDi~ 437 (643)
+..+|||.|||+..+..+....... .+.++..-|+++-..+..+++. ..+|+|||+- -+.++++.
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCcccc
Confidence 3468999999999888776655443 6889999999999998888863 5679999962 14677777
Q ss_pred CccEEE
Q 006500 438 GVQTVI 443 (643)
Q Consensus 438 ~v~~VI 443 (643)
++.++|
T Consensus 327 siEVLv 332 (691)
T KOG0338|consen 327 SIEVLV 332 (691)
T ss_pred ceeEEE
Confidence 777766
No 313
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.09 E-value=0.31 Score=54.16 Aligned_cols=135 Identities=19% Similarity=0.146 Sum_probs=81.7
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC--CceEEEEecCCChHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT--DIRCCLVVGGLSTKMQ 239 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~--~~~v~~~~g~~~~~~~ 239 (643)
.+-.++..|--.|||.. +.+++..++.. ..+.++++++|.+..+..+++.+..+.... +..+..+.| ...
T Consensus 254 qk~tVflVPRR~GKTwi-vv~iI~~ll~s---~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--- 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWF-LVPLIALALAT---FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--- 325 (738)
T ss_pred ccceEEEecccCCchhh-HHHHHHHHHHh---CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---
Confidence 46788999999999986 34666655533 235579999999999999998888765421 222222222 111
Q ss_pred HHHhcCC--CcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccch
Q 006500 240 ETALRSM--PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (643)
Q Consensus 240 ~~~l~~~--~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~ 314 (643)
.-.+.++ +.|.++|- .+.....-..++++|||||+.+...-+...+ -.+. ..++++|++|.|.+.
T Consensus 326 ~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~--~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 326 SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLN--QTNCKIIFVSSTNTG 392 (738)
T ss_pred EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHh--ccCccEEEEecCCCC
Confidence 0011112 35666531 1222233446889999999987653232222 2222 237889999998764
No 314
>PF05729 NACHT: NACHT domain
Probab=94.05 E-value=0.27 Score=45.12 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=27.0
Q ss_pred eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 006500 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~ 210 (643)
++|.|+.|+|||.. +..+...+...........+++..+.+....
T Consensus 3 l~I~G~~G~GKStl-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 3 LWISGEPGSGKSTL-LRKLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEECCCCCChHHH-HHHHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 67999999999976 5555555554432211123455555555544
No 315
>PRK04195 replication factor C large subunit; Provisional
Probab=94.02 E-value=0.36 Score=53.27 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCchhHHH
Q 006500 162 GRDICGSAITGSGKTAA 178 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~ 178 (643)
.+.+++.||+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999975
No 316
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.02 E-value=0.61 Score=42.77 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=42.8
Q ss_pred CCCeeEEEEeCCchhccCCh--HHHHHHHHHHCCCCceeEEEeeccchhHHHHHH
Q 006500 269 LDDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~--~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 321 (643)
...+++||+||.-..++.|+ ...+..+++..|...-+|+.+-.+++++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999999888775 467788888888887888888888888776654
No 317
>PRK10867 signal recognition particle protein; Provisional
Probab=94.01 E-value=0.66 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=16.0
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHH
Q 006500 164 DICGSAITGSGKTAAFALPTLERL 187 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l 187 (643)
-++++|++|+|||++ +.-+...+
T Consensus 102 vI~~vG~~GsGKTTt-aakLA~~l 124 (433)
T PRK10867 102 VIMMVGLQGAGKTTT-AGKLAKYL 124 (433)
T ss_pred EEEEECCCCCcHHHH-HHHHHHHH
Confidence 366899999999986 33333333
No 318
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.94 E-value=0.31 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=19.2
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
.++++.||+|+|||.+ +-.++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999986 455555543
No 319
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.89 E-value=0.16 Score=52.74 Aligned_cols=28 Identities=32% Similarity=0.262 Sum_probs=20.5
Q ss_pred CCC-eEEEcCCCchhHHHhHHhHHHHHhcC
Q 006500 162 GRD-ICGSAITGSGKTAAFALPTLERLLYR 190 (643)
Q Consensus 162 g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~ 190 (643)
... +++.||.|+|||.+ ...+...++..
T Consensus 23 ~~halL~~Gp~G~Gktt~-a~~lA~~l~~~ 51 (325)
T COG0470 23 LPHALLFYGPPGVGKTTA-ALALAKELLCE 51 (325)
T ss_pred CCceeeeeCCCCCCHHHH-HHHHHHHHhCC
Confidence 345 89999999999987 45555555543
No 320
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.86 E-value=0.15 Score=62.76 Aligned_cols=125 Identities=24% Similarity=0.222 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 006500 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (643)
++|+-|.++|. ..+++++|.|..|||||.+..--++..+... ....++|+|+=|+..|..+.+.+..-.... +.
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~~ 74 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG---VDIDRLLVVTFTNAAAREMKERIEEALQKA-LQ 74 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC---CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-Hh
Confidence 36889999997 3688999999999999998555566555432 223469999999999988777766533210 00
Q ss_pred EEEEecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCC-CeeEEEEeCCch
Q 006500 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLD-DLAVLILDEADR 282 (643)
Q Consensus 227 v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~-~i~~lVvDEah~ 282 (643)
.......-...+..-...-|+|-..++..+-+.....+. +-.+=|.||...
T Consensus 75 -----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 -----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 000001111222233455678877776555443211110 113445776664
No 321
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.85 E-value=0.16 Score=59.07 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 006500 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (643)
Q Consensus 146 ~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~ 221 (643)
..|++-|.+++.. ....++|.|..|||||.+ ++.-+.+++... ...+-++|+++-|+..|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-l~~ria~Li~~~-~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRV-LTHRIAHLIAEK-NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHH-HHHHHHHHHHcC-CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999864 346799999999999988 444445555322 23345799999999999998888877654
No 322
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.83 E-value=0.25 Score=56.86 Aligned_cols=73 Identities=23% Similarity=0.213 Sum_probs=57.9
Q ss_pred HHHHHHHhhccCCceEEEEeCCHHHHHHHHHHHhhc----C-CceEE-ccCCCCHHHHHHHHHHhhcCCceEEEecccc
Q 006500 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA----A-LKAAE-LHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (643)
Q Consensus 358 ~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~----~-~~~~~-lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~ 430 (643)
...+..+.....+.++++.+||...+.+..+.|... + ..+.. +||.|+..++..++++|.+|.++|||+|..+
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 334445555556789999999998888888777654 2 44433 9999999999999999999999999999765
No 323
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.80 E-value=0.36 Score=48.79 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=57.6
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCC---CCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRP---KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~ 239 (643)
.++++.|+||-|||.+ +--+....... ....-|.++|-+|...-....+..+-... +..+. ...+....
T Consensus 62 p~lLivG~snnGKT~I--i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~~---~~~~~~~~ 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI--IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPYR---PRDRVAKL 133 (302)
T ss_pred CceEEecCCCCcHHHH--HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---CcccC---CCCCHHHH
Confidence 5899999999999984 22222222111 11223567777887766555555444322 21110 01111100
Q ss_pred HHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChH--HHHHHHHHHCCCCce
Q 006500 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQ 304 (643)
Q Consensus 240 ~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~--~~~~~i~~~~~~~~q 304 (643)
. ...+.++.. -.+++|||||.|.++..... ..+...++.+....+
T Consensus 134 ~--------------~~~~~llr~------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 134 E--------------QQVLRLLRR------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred H--------------HHHHHHHHH------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 0 011223332 24779999999999876543 233344444444443
No 324
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.79 E-value=0.049 Score=60.37 Aligned_cols=158 Identities=19% Similarity=0.175 Sum_probs=94.9
Q ss_pred CCCCCHHHHHHHHHHhcC----------CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHH
Q 006500 145 YSKPTPIQAACIPLALTG----------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (643)
Q Consensus 145 ~~~~~~~Q~~~i~~~l~g----------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~ 214 (643)
-..++..|.+++-.+.+. -..||....|.||-.+..-.|++..++.++ ++|++.-+..|-...-+
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK-----rAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK-----RALWFSVSSDLKFDAER 336 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc-----eeEEEEeccccccchhh
Confidence 346788899888776552 246666667776665444556777776544 58999988888666555
Q ss_pred HHHHHhhcCCceEEEEecC----CChHHHHHHhcCCCcEEEECchhHHHHHhccCcc------------CCCCeeEEEEe
Q 006500 215 MIEKIAQFTDIRCCLVVGG----LSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV------------DLDDLAVLILD 278 (643)
Q Consensus 215 ~~~~l~~~~~~~v~~~~g~----~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~------------~l~~i~~lVvD 278 (643)
-+..+. .+++.|..+.-- .+... .-...-.|+++|+-.|+-.-...... --..=.+||+|
T Consensus 337 DL~Dig-A~~I~V~alnK~KYakIss~e---n~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 337 DLRDIG-ATGIAVHALNKFKYAKISSKE---NTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred chhhcC-CCCccceehhhcccccccccc---cCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 666543 345555443221 11100 00112369999997775443321100 00112589999
Q ss_pred CCchhccC---------ChHHHHHHHHHHCCCCceeEEEeecc
Q 006500 279 EADRLLEL---------GFSAEIHELVRLCPKRRQTMLFSATL 312 (643)
Q Consensus 279 Eah~l~~~---------g~~~~~~~i~~~~~~~~q~i~~SAT~ 312 (643)
|||+-.+. -....+..+-+.+|. .+++.-|||-
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~-ARVVYASATG 454 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPN-ARVVYASATG 454 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhCCC-ceEEEeeccC
Confidence 99986552 145677777777765 5688899984
No 325
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.78 E-value=0.41 Score=52.75 Aligned_cols=24 Identities=25% Similarity=0.052 Sum_probs=17.3
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 164 DICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
-+|+.||.|+|||++ ...+...+.
T Consensus 38 a~Lf~GppGtGKTTl-A~~lA~~l~ 61 (504)
T PRK14963 38 AYLFSGPRGVGKTTT-ARLIAMAVN 61 (504)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHHh
Confidence 359999999999987 344444444
No 326
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.73 E-value=0.23 Score=50.66 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.3
Q ss_pred CCCeEEEcCCCchhHHHh
Q 006500 162 GRDICGSAITGSGKTAAF 179 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~ 179 (643)
+.++++.||+|+|||+++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999753
No 327
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.73 E-value=0.59 Score=51.99 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=25.9
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
...++++||||+|.|.... .+.+.+.++..|....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3567899999999887533 334555555555555555544
No 328
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.71 E-value=0.14 Score=52.14 Aligned_cols=17 Identities=41% Similarity=0.419 Sum_probs=14.2
Q ss_pred CCCeEEEcCCCchhHHH
Q 006500 162 GRDICGSAITGSGKTAA 178 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~ 178 (643)
++.++++||||+|||++
T Consensus 194 ~~vi~~vGptGvGKTTt 210 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTT 210 (282)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34577999999999986
No 329
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.68 E-value=0.13 Score=57.87 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=24.8
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeecc
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~ 312 (643)
...++++||||+|.|....|. .+.+.++..|....+|+ .+|-
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL-~Ttd 163 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVL-ATTD 163 (618)
T ss_pred cCCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEE-EECC
Confidence 346889999999998754433 33444444444444444 3343
No 330
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.62 E-value=0.36 Score=52.52 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=13.5
Q ss_pred CCeEEEcCCCchhHHH
Q 006500 163 RDICGSAITGSGKTAA 178 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~ 178 (643)
+-+++.||||+|||++
T Consensus 257 ~Vi~LvGpnGvGKTTT 272 (484)
T PRK06995 257 GVFALMGPTGVGKTTT 272 (484)
T ss_pred cEEEEECCCCccHHHH
Confidence 3466999999999986
No 331
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.49 E-value=0.12 Score=55.54 Aligned_cols=41 Identities=32% Similarity=0.313 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHhcCCC--eEEEcCCCchhHHHhHHhHHHHHhcC
Q 006500 149 TPIQAACIPLALTGRD--ICGSAITGSGKTAAFALPTLERLLYR 190 (643)
Q Consensus 149 ~~~Q~~~i~~~l~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~~ 190 (643)
++.|...+..+++... +++.||||||||++ +..+++.+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 5778888877777543 44899999999988 77788777654
No 332
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.41 E-value=0.31 Score=56.05 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=64.0
Q ss_pred CceEEEEeCCHHHHHHHHHHHhh-cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEecC
Q 006500 370 TSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446 (643)
Q Consensus 370 ~~~~LIF~~s~~~~~~l~~~L~~-~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d 446 (643)
+.++||.++++..+..+...|.. .+..+..+||+++..+|.........|..+|+|+|..+.. +.+.++.+||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 56899999999999999888865 4788999999999999999999999999999999974432 5567788887543
No 333
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.30 E-value=0.22 Score=48.90 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc-------CCceEEEEecCC
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-------TDIRCCLVVGGL 234 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~-------~~~~v~~~~g~~ 234 (643)
|..+++.|++|+|||+..+..+.+.+..... ++++++-. +-..++.+.+..+.-. ..+.+.-.....
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge-----~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGE-----KVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT-------EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC-----cEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 4678899999999997644445455443122 37777643 4445566666554210 011111111100
Q ss_pred ChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhcc----CChHHHHHHHHHHCCCCceeEEEee
Q 006500 235 STKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----LGFSAEIHELVRLCPKRRQTMLFSA 310 (643)
Q Consensus 235 ~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~----~g~~~~~~~i~~~~~~~~q~i~~SA 310 (643)
... . -..+..+...+... +.-.....+|||-...+.. ..++..+..+...+.....+.++++
T Consensus 93 ~~~----------~--~~~~~~l~~~i~~~--i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 93 IGW----------S--PNDLEELLSKIREA--IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp ST-----------T--SCCHHHHHHHHHHH--HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccc----------c--ccCHHHHHHHHHHH--HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 000 0 11233333333321 1111237999999988832 2255666667666665666777777
Q ss_pred cc
Q 006500 311 TL 312 (643)
Q Consensus 311 T~ 312 (643)
..
T Consensus 159 ~~ 160 (226)
T PF06745_consen 159 EM 160 (226)
T ss_dssp EE
T ss_pred cc
Confidence 74
No 334
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.30 E-value=0.23 Score=50.26 Aligned_cols=41 Identities=27% Similarity=0.166 Sum_probs=25.0
Q ss_pred HhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcC
Q 006500 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (643)
Q Consensus 159 ~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~P 204 (643)
+..|.-+++.|++|+|||.. ++.++..+... .+.+++++.-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l-~~~~~~~~~~~----~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTF-LREYALDLITQ----HGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHH-HHHHHHHHHHh----cCceEEEEEc
Confidence 33567788999999999975 34333333222 1234777653
No 335
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.26 E-value=0.95 Score=48.71 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=26.6
Q ss_pred eeEEEEeCCchhcc-CChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHHH
Q 006500 272 LAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (643)
Q Consensus 272 i~~lVvDEah~l~~-~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 322 (643)
+++||||=+-++.. ......+..+...+.+.--++.++||...+....+..
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~ 234 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKT 234 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHH
Confidence 55677777765542 2233444444444444334566677765555544443
No 336
>PRK10436 hypothetical protein; Provisional
Probab=93.23 E-value=0.23 Score=54.01 Aligned_cols=39 Identities=38% Similarity=0.334 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHhc--CCCeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 149 TPIQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 149 ~~~Q~~~i~~~l~--g~d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
.+.|...+..++. +.-++++||||||||++ +..++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 4556666665554 34577999999999987 456666653
No 337
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.21 E-value=0.48 Score=50.84 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.4
Q ss_pred CCCeeEEEEeCCchhcc
Q 006500 269 LDDLAVLILDEADRLLE 285 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~ 285 (643)
+....++||||+|.|..
T Consensus 125 ~~~~kvvIIdea~~l~~ 141 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI 141 (397)
T ss_pred cCCeEEEEEeChhhCCH
Confidence 46788999999999864
No 338
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.17 E-value=0.25 Score=51.39 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=14.8
Q ss_pred CCeEEEcCCCchhHHHh
Q 006500 163 RDICGSAITGSGKTAAF 179 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~ 179 (643)
.+.|++||.|+|||..+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 47999999999999854
No 339
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.14 E-value=0.38 Score=53.85 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=19.4
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCC
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~ 300 (643)
...++++||||+|.|....+ +.+.+.+...|
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~-naLLKtLEepp 147 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAF-NALLKTLEEPP 147 (559)
T ss_pred cCCeEEEEEECcccCCHHHH-HHHHHHhcCCC
Confidence 45688999999998864322 33344444433
No 340
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.13 E-value=0.55 Score=44.12 Aligned_cols=102 Identities=20% Similarity=0.184 Sum_probs=57.7
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHh
Q 006500 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l 243 (643)
=.++.|||+||||.. +|-.+.++... +-++++..|...- . .+.....-.-|.
T Consensus 6 l~~i~gpM~SGKT~e-Ll~r~~~~~~~-----g~~v~vfkp~iD~------------R-~~~~~V~Sr~G~--------- 57 (201)
T COG1435 6 LEFIYGPMFSGKTEE-LLRRARRYKEA-----GMKVLVFKPAIDT------------R-YGVGKVSSRIGL--------- 57 (201)
T ss_pred EEEEEccCcCcchHH-HHHHHHHHHHc-----CCeEEEEeccccc------------c-cccceeeeccCC---------
Confidence 357899999999986 55555555433 3358888885221 0 111111111111
Q ss_pred cCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHH
Q 006500 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297 (643)
Q Consensus 244 ~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~ 297 (643)
....++|-++..+.+.+.... . ...+.+|.||||+-+.. .....+.++..
T Consensus 58 -~~~A~~i~~~~~i~~~i~~~~-~-~~~~~~v~IDEaQF~~~-~~v~~l~~lad 107 (201)
T COG1435 58 -SSEAVVIPSDTDIFDEIAALH-E-KPPVDCVLIDEAQFFDE-ELVYVLNELAD 107 (201)
T ss_pred -cccceecCChHHHHHHHHhcc-c-CCCcCEEEEehhHhCCH-HHHHHHHHHHh
Confidence 124566777788888776532 1 12278999999995432 23333444433
No 341
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.10 E-value=0.65 Score=49.50 Aligned_cols=46 Identities=28% Similarity=0.404 Sum_probs=28.1
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccchhH
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 316 (643)
....+++||||+|+|... ..+.+.++++..|.. -++++++|-+..+
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~-~~fIL~a~~~~~l 160 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPR-TVWLLCAPSPEDV 160 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCC-CeEEEEECChHHC
Confidence 356789999999998643 234555566554444 4455555544433
No 342
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.08 E-value=0.18 Score=56.12 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=23.7
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeecc
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~ 312 (643)
...+++||||||.|... -...+..++...|...- ++|.+|-
T Consensus 118 ~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tv-fIL~Tt~ 158 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVV-FIFATTE 158 (605)
T ss_pred CCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEE-EEEECCC
Confidence 45789999999987543 23445555555444433 3333343
No 343
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.08 E-value=0.41 Score=54.11 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=23.5
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeec
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT 311 (643)
+...++|||||+|.|.... .+.+...+...+.. -+++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~-tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPH-AIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCC-eEEEEEeC
Confidence 4568899999999876432 23344444444333 33444443
No 344
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.05 E-value=0.22 Score=46.33 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=42.5
Q ss_pred CCCeeEEEEeCCchhccCChH--HHHHHHHHHCCCCceeEEEeeccchhHHHHHHH
Q 006500 269 LDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~--~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 322 (643)
-..+++||+||+-..+++|+. ..+..+++..|...-+|+..-.+|+.+.+++..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 356899999999999888854 567788888888878888777888877776553
No 345
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.01 E-value=0.29 Score=53.73 Aligned_cols=45 Identities=31% Similarity=0.346 Sum_probs=30.2
Q ss_pred HHHCCCCCCCHHHHHHHHHHhcCC-C-eEEEcCCCchhHHHhHHhHHHHHh
Q 006500 140 CEALGYSKPTPIQAACIPLALTGR-D-ICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 140 l~~~g~~~~~~~Q~~~i~~~l~g~-d-~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
|..+|| .+-|.+.+..++... . ++++||||||||++ +..++..+.
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~ 267 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLN 267 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccC
Confidence 345554 466777777666643 3 56999999999986 444565553
No 346
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.94 E-value=2.1 Score=39.81 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=16.2
Q ss_pred eEEEcCCCchhHHHhHHhHHHHHh
Q 006500 165 ICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
+++.|++|+|||.. ..-+...+.
T Consensus 3 ~~~~G~~G~GKTt~-~~~la~~~~ 25 (173)
T cd03115 3 ILLVGLQGVGKTTT-AAKLALYLK 25 (173)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHH
Confidence 56899999999986 344444443
No 347
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.91 E-value=0.58 Score=51.15 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.3
Q ss_pred CeEEEcCCCchhHHH
Q 006500 164 DICGSAITGSGKTAA 178 (643)
Q Consensus 164 d~l~~a~TGsGKT~~ 178 (643)
.+|++||+|+|||+.
T Consensus 38 ~~Lf~GPpGtGKTTl 52 (472)
T PRK14962 38 AYIFAGPRGTGKTTV 52 (472)
T ss_pred EEEEECCCCCCHHHH
Confidence 368999999999986
No 348
>PF13173 AAA_14: AAA domain
Probab=92.82 E-value=1 Score=39.62 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=23.6
Q ss_pred eeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeecc
Q 006500 272 LAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (643)
Q Consensus 272 i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~ 312 (643)
-.+|++||+|.+.+ +...+..+.... ...++ ++|+..
T Consensus 62 ~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~i-i~tgS~ 98 (128)
T PF13173_consen 62 KKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKI-ILTGSS 98 (128)
T ss_pred CcEEEEehhhhhcc--HHHHHHHHHHhc-cCceE-EEEccc
Confidence 44899999999875 566666666644 33444 444443
No 349
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.80 E-value=0.39 Score=53.07 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=62.4
Q ss_pred CceEEEEeCCHHHHHHHHHHHhh-cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEe
Q 006500 370 TSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 444 (643)
Q Consensus 370 ~~~~LIF~~s~~~~~~l~~~L~~-~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~ 444 (643)
+.++||.+|+...+..+...|.. .+..+..+||+++..+|.++.....+|+.+|+|+|..+-. +-+.++.+||.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 56899999999999888888865 3778999999999999999999999999999999976543 45667787774
No 350
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.79 E-value=1.1 Score=49.61 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHhcC------CCeE-EEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006500 149 TPIQAACIPLALTG------RDIC-GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (643)
Q Consensus 149 ~~~Q~~~i~~~l~g------~d~l-~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 217 (643)
|--|..++-.++.. +.++ +.|.-|-||+.+..+.+..++... -..+.|..|.-+=..-+++.+-
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~G-----ysnIyvtSPspeNlkTlFeFv~ 325 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFG-----YSNIYVTSPSPENLKTLFEFVF 325 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcC-----cceEEEcCCChHHHHHHHHHHH
Confidence 66788887665542 4444 899999999999888887776543 2248899999877666655543
No 351
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.77 E-value=0.26 Score=51.00 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=27.0
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEee
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SA 310 (643)
...++++|||+||.|... -.+.+.++++.-|...-+|+.|.
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEEC
Confidence 456899999999998743 35556666666555554444443
No 352
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.73 E-value=0.28 Score=49.36 Aligned_cols=44 Identities=32% Similarity=0.318 Sum_probs=29.5
Q ss_pred HHHCCCCCCCHHHHHHHHHHhc-C-CCeEEEcCCCchhHHHhHHhHHHHH
Q 006500 140 CEALGYSKPTPIQAACIPLALT-G-RDICGSAITGSGKTAAFALPTLERL 187 (643)
Q Consensus 140 l~~~g~~~~~~~Q~~~i~~~l~-g-~d~l~~a~TGsGKT~~~~l~~l~~l 187 (643)
+..+|+ .+.|.+.+..++. . ..++++|+||||||+. +..++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 445554 4556666666554 3 3578999999999986 45555555
No 353
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.71 E-value=0.68 Score=49.03 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=19.1
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
.++++.||+|+|||.+ +-.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999976 455555543
No 354
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.59 E-value=0.71 Score=49.85 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=14.1
Q ss_pred CCeEEEcCCCchhHHH
Q 006500 163 RDICGSAITGSGKTAA 178 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~ 178 (643)
..+++.||+|+|||..
T Consensus 37 ~~ilL~GppGtGKTtL 52 (413)
T PRK13342 37 SSMILWGPPGTGKTTL 52 (413)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3789999999999975
No 355
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.56 E-value=1.1 Score=44.09 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=30.3
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 218 (643)
.|.-+++.|++|+|||+. ++.++..+... +.++++++.. +-..+..+.+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl-~~~~~~~~~~~-----g~~~~yi~~e-~~~~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSIL-SQRLAYGFLQN-----GYSVSYVSTQ-LTTTEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHhC-----CCcEEEEeCC-CCHHHHHHHHHH
Confidence 467788999999999975 34444444432 2346777743 333444444443
No 356
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.51 E-value=0.21 Score=46.99 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=27.6
Q ss_pred HHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 006500 157 PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (643)
Q Consensus 157 ~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q 211 (643)
.++-.++++++.|++|+|||.. ...+...+.... ..+++ ++...|...
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThL-a~ai~~~~~~~g-----~~v~f-~~~~~L~~~ 89 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHL-AVAIANEAIRKG-----YSVLF-ITASDLLDE 89 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHH-HHHHHHHHHHTT-------EEE-EEHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHH-HHHHHHHhccCC-----cceeE-eecCceecc
Confidence 3344578999999999999976 444555555432 23444 455566444
No 357
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.93 Score=45.83 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHH-----------HHHHHHHHHHHHhhcCCceEEEE
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE-----------LAVQVHSMIEKIAQFTDIRCCLV 230 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~-----------La~Q~~~~~~~l~~~~~~~v~~~ 230 (643)
+|-+++.||+|+|||.. +-.+.+++--+.........||=...-. |+.++++.+..+....+.-|.++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56678999999999964 5666666654432222223455444444 45555566666666666555555
Q ss_pred ecCCC---------------hH---------HHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccC
Q 006500 231 VGGLS---------------TK---------MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (643)
Q Consensus 231 ~g~~~---------------~~---------~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~ 286 (643)
..... .+ .|...++..++++|-|..-|.+ .++.-.||-||-....
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----------siD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----------SIDVAFVDRADIVFYV 324 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----------HHHHHhhhHhhheeec
Confidence 54311 00 2334456667777666544443 3455778999977665
Q ss_pred C
Q 006500 287 G 287 (643)
Q Consensus 287 g 287 (643)
|
T Consensus 325 G 325 (423)
T KOG0744|consen 325 G 325 (423)
T ss_pred C
Confidence 5
No 358
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.48 E-value=0.68 Score=45.80 Aligned_cols=51 Identities=18% Similarity=0.069 Sum_probs=33.2
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l 219 (643)
|..+++.|++|+|||+..+..+.+.+ .. +.++++++ +-+-..|+.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~-~~-----ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL-QM-----GEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-Hc-----CCcEEEEE-eeCCHHHHHHHHHHh
Confidence 56788999999999976444444444 22 22477776 345556666666654
No 359
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.41 Score=52.30 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=33.4
Q ss_pred CcccCCcccCCCCHHHHHHHHH---CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHH
Q 006500 121 SFHANSFMELNLSRPLLRACEA---LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (643)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~---~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~ 178 (643)
..+..+|.+.|--..+...|.. ..+.+|--++.-.|. .-..+|++||.|+|||+.
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLL 561 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHH
Confidence 4456678888765555555433 223333333333221 135799999999999985
No 360
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.43 E-value=0.31 Score=46.20 Aligned_cols=32 Identities=44% Similarity=0.461 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHhc-CCCeEEEcCCCchhHHH
Q 006500 147 KPTPIQAACIPLALT-GRDICGSAITGSGKTAA 178 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~-g~d~l~~a~TGsGKT~~ 178 (643)
.+++-|...+...+. |..++++|+||||||+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 467778888877666 67888999999999985
No 361
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=0.15 Score=53.34 Aligned_cols=24 Identities=42% Similarity=0.443 Sum_probs=18.4
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
-|+|+.||||||||+. .-.|.+++
T Consensus 227 SNvLllGPtGsGKTll--aqTLAr~l 250 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLL--AQTLARVL 250 (564)
T ss_pred ccEEEECCCCCchhHH--HHHHHHHh
Confidence 5799999999999984 44455554
No 362
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.34 E-value=0.78 Score=52.84 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=24.2
Q ss_pred CeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccchhH
Q 006500 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 316 (643)
...+|||||+|++.... .. .++..+. ..++++++||-.+..
T Consensus 109 ~~~IL~IDEIh~Ln~~q-Qd---aLL~~lE-~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ-QD---ALLPWVE-NGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCHHH-HH---HHHHHhc-CceEEEEEecCCChH
Confidence 35589999999875321 22 2333332 356778888765443
No 363
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.22 E-value=0.23 Score=51.81 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=29.7
Q ss_pred HhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 006500 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (643)
Q Consensus 159 ~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La 209 (643)
+..+.+++++|+||||||+. +-.++..+ .. ..+++.+=.+.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i-~~-----~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAI-PP-----QERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHccc-CC-----CCCEEEECCCcccc
Confidence 33578999999999999974 34444333 11 23477778887773
No 364
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.18 E-value=3.1 Score=43.04 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=30.3
Q ss_pred CCeeEEEEeCCchhcc-CChHHHHHHHHHHC------CCCceeEEEeeccchhHHHHHHH
Q 006500 270 DDLAVLILDEADRLLE-LGFSAEIHELVRLC------PKRRQTMLFSATLTEDVDELIKL 322 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~-~g~~~~~~~i~~~~------~~~~q~i~~SAT~~~~~~~~~~~ 322 (643)
.++++||||=+-++.. ......+..+.+.+ .+..-++.++||...+....+..
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~ 254 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA 254 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH
Confidence 3567888888887653 22334555554432 23335688899976544333333
No 365
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.18 E-value=0.76 Score=50.78 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=27.0
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
...++++||||||.|... -.+.+...+...|....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 457889999999988643 3345566666666666555554
No 366
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.16 E-value=0.35 Score=51.00 Aligned_cols=27 Identities=22% Similarity=-0.002 Sum_probs=20.4
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhc
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 189 (643)
+..++++||||||||+. +-.++..+..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 44688999999999986 5566666643
No 367
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.08 E-value=0.37 Score=54.14 Aligned_cols=45 Identities=31% Similarity=0.335 Sum_probs=30.7
Q ss_pred HHHCCCCCCCHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 140 CEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 140 l~~~g~~~~~~~Q~~~i~~~l~g--~d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
+..+|| .+-|.+.+..++.. .-++++||||||||++ +..++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 455664 45666666666553 3467999999999987 456666653
No 368
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.07 E-value=0.76 Score=52.52 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=63.5
Q ss_pred CCceEEEEeCCHHHHHHHHHHH----hhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccc-cccCCCCCccEEE
Q 006500 369 FTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVI 443 (643)
Q Consensus 369 ~~~~~LIF~~s~~~~~~l~~~L----~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~-~~GlDi~~v~~VI 443 (643)
.+.+++|.+||+..+......+ ...|+++..+||+++..+|..++....+|+.+|+|+|..+ ...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 3568999999999888776554 4457999999999999999999999999999999999765 3457778888887
Q ss_pred e
Q 006500 444 N 444 (643)
Q Consensus 444 ~ 444 (643)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 369
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.02 E-value=0.54 Score=52.65 Aligned_cols=17 Identities=29% Similarity=0.173 Sum_probs=14.4
Q ss_pred CCeEEEcCCCchhHHHh
Q 006500 163 RDICGSAITGSGKTAAF 179 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~ 179 (643)
..+|+.||.|+|||.+.
T Consensus 39 ha~Lf~GPpG~GKTtiA 55 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIA 55 (624)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35789999999999864
No 370
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.95 E-value=0.31 Score=51.24 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=19.7
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
.+.-++++||||||||+. +-.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 456788999999999986 444555543
No 371
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.95 E-value=0.2 Score=55.84 Aligned_cols=76 Identities=20% Similarity=0.335 Sum_probs=56.9
Q ss_pred HHHhhcCCceEEEecccccccCCCCCccEEE--------ecCCCCChhHHHHHHhhcccCCCc-cEEEEE-ecc--CcHH
Q 006500 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVI--------NYACPRDLTSYVHRVGRTARAGRE-GYAVTF-VTD--NDRS 480 (643)
Q Consensus 413 l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI--------~~d~p~s~~~y~Qr~GRagR~g~~-g~~~~l-~~~--~d~~ 480 (643)
-++|..|+-.|-|-+.+++-||-++.-+.|+ -+.+|||...-||..|||+|.++- +--|+| +++ .++.
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 4679999999999999999999997766555 588999999999999999997642 333433 333 3555
Q ss_pred HHHHHHHH
Q 006500 481 LLKAIAKR 488 (643)
Q Consensus 481 ~l~~i~~~ 488 (643)
+..-++++
T Consensus 930 FAS~VAKR 937 (1300)
T KOG1513|consen 930 FASIVAKR 937 (1300)
T ss_pred HHHHHHHH
Confidence 54444444
No 372
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.86 E-value=0.25 Score=51.49 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=26.4
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEee
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SA 310 (643)
...++++|||+||.|... -.+.+.++++.-|...-+|++|.
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEEC
Confidence 467899999999998643 34555666666444444444443
No 373
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=3.6 Score=41.26 Aligned_cols=125 Identities=17% Similarity=0.221 Sum_probs=69.2
Q ss_pred HHHHhcCC-----CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEE
Q 006500 156 IPLALTGR-----DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230 (643)
Q Consensus 156 i~~~l~g~-----d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~ 230 (643)
+|.++.|+ .+++-||.|+||+.. .-++..- . + .+.+-+.+..|+..|.-+-.++..
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYL--AKAVATE---A----n-STFFSvSSSDLvSKWmGESEkLVk--------- 215 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYL--AKAVATE---A----N-STFFSVSSSDLVSKWMGESEKLVK--------- 215 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHH--HHHHHhh---c----C-CceEEeehHHHHHHHhccHHHHHH---------
Confidence 46788874 588999999999954 3333221 0 1 256777777887666444333211
Q ss_pred ecCCChHHHHHHhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC-------hHHHHHHHHHHCC---
Q 006500 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-------FSAEIHELVRLCP--- 300 (643)
Q Consensus 231 ~g~~~~~~~~~~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g-------~~~~~~~i~~~~~--- 300 (643)
.|..+.+. +.-++|.|||.|.+.... -+..-.+++-.+.
T Consensus 216 -------------------------nLFemARe------~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG 264 (439)
T KOG0739|consen 216 -------------------------NLFEMARE------NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVG 264 (439)
T ss_pred -------------------------HHHHHHHh------cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccc
Confidence 12222222 234589999999776422 1111122222221
Q ss_pred -CCceeEEEeeccchhHHH-HHHHhcCCCeEE
Q 006500 301 -KRRQTMLFSATLTEDVDE-LIKLSLTKPLRL 330 (643)
Q Consensus 301 -~~~q~i~~SAT~~~~~~~-~~~~~~~~p~~~ 330 (643)
..--++++.||-.+++.+ .++..+.+.+.+
T Consensus 265 ~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 265 NDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred cCCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 234579999998887644 445444444443
No 374
>PRK14873 primosome assembly protein PriA; Provisional
Probab=91.83 E-value=0.71 Score=52.59 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=62.9
Q ss_pred CceEEEEeCCHHHHHHHHHHHhhc-C-CceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEEec
Q 006500 370 TSKVIIFSGTKQAAHRLKILFGLA-A-LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445 (643)
Q Consensus 370 ~~~~LIF~~s~~~~~~l~~~L~~~-~-~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~ 445 (643)
+..+||.++.+..+..+...|... + ..+..+|++++..+|.+......+|+.+|+|+|..+-- +-+++...||..
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvd 264 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLVAIW 264 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEEEEE
Confidence 668999999999999888888754 3 67999999999999999999999999999999987643 455566667643
No 375
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.78 E-value=0.37 Score=46.33 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=14.8
Q ss_pred CCeEEEcCCCchhHHH
Q 006500 163 RDICGSAITGSGKTAA 178 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~ 178 (643)
.++++.||+|.|||++
T Consensus 49 P~liisGpPG~GKTTs 64 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTS 64 (333)
T ss_pred CceEeeCCCCCchhhH
Confidence 4899999999999986
No 376
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.76 E-value=0.48 Score=49.33 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=27.9
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
.+++++++|+||||||+. +-.++..+- . ..+++++=-+.||
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip-~-----~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIP-A-----IERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCC-C-----CCeEEEecCCCcc
Confidence 468999999999999974 444444431 1 2357776666666
No 377
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.76 E-value=0.48 Score=53.64 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=17.9
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
..+|+.||.|+|||.+ ...+...++
T Consensus 39 ~a~Lf~Gp~G~GKttl-A~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSS-ARILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHH-HHHHHHHhc
Confidence 4579999999999986 344444443
No 378
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=91.67 E-value=0.93 Score=53.70 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=63.7
Q ss_pred CceEEEEeCCHHHHHHHHHHHhh----cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccc-cccCCCCCccEEEe
Q 006500 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVIN 444 (643)
Q Consensus 370 ~~~~LIF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~-~~GlDi~~v~~VI~ 444 (643)
+.+++|.+||...+......|.. .++++..++|.++..++..++..+.+|+.+|+|+|..+ ...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 56899999999999988776554 46788899999999999999999999999999999744 45678888988884
No 379
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.60 E-value=1.4 Score=51.03 Aligned_cols=44 Identities=14% Similarity=0.303 Sum_probs=26.1
Q ss_pred eEEEEeCCchhccCCh----HHHHHHHHHHCCCCceeEEEeeccchhH
Q 006500 273 AVLILDEADRLLELGF----SAEIHELVRLCPKRRQTMLFSATLTEDV 316 (643)
Q Consensus 273 ~~lVvDEah~l~~~g~----~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 316 (643)
.+|+|||+|.+...|- ...+..++..+-...++.++.||-.++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999975432 2233334443333445666777765554
No 380
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=91.60 E-value=0.79 Score=46.98 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=27.7
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 217 (643)
..+|++||.|+|||..+ .++.. .......+.+=+.-|.+-...+...++
T Consensus 163 pSmIlWGppG~GKTtlA--rlia~----tsk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLA--RLIAS----TSKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHH--HHHHh----hcCCCceEEEEEeccccchHHHHHHHH
Confidence 47999999999999742 22221 111122345556655555444444444
No 381
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.50 E-value=0.22 Score=54.86 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=41.5
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEe
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~ 231 (643)
.++++.||||||||..+.+|.+-.. +. -++|+=|-.+|.......+++ .+.+|.++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~---~~-----s~iV~D~KgEl~~~t~~~r~~----~G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY---PG-----SMIVTDPKGELYEKTAGYRKK----RGYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc---cC-----CEEEEECCCcHHHHHHHHHHH----CCCEEEEee
Confidence 4799999999999999999976332 11 389999999997766665554 344555443
No 382
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.46 E-value=1.7 Score=41.13 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=19.0
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhc
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLY 189 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~ 189 (643)
+.+|+.||.|+|||.. ...+...++.
T Consensus 15 ~~~L~~G~~G~gkt~~-a~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELL-ALALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHH-HHHHHHHHcC
Confidence 3578999999999975 4555555554
No 383
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.40 E-value=0.18 Score=53.81 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=40.0
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEe
Q 006500 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~ 231 (643)
++++.|+||||||..+.+|-+-.. +..++|+=|.-++........+. .|..|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~--------~~s~vv~D~Kge~~~~t~~~r~~----~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW--------PGSVVVLDPKGENFELTSEHRRA----LGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC--------CCCEEEEccchhHHHHHHHHHHH----cCCeEEEEc
Confidence 478999999999999888876432 12489999999997766555443 344555443
No 384
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.34 E-value=0.7 Score=52.13 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=23.2
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEE
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~ 308 (643)
+...+++||||+|.|.... .+.+..+++..|...-+|+.
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~ 163 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFA 163 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEE
Confidence 4568899999999986432 23444444444443333333
No 385
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.31 E-value=0.8 Score=47.77 Aligned_cols=41 Identities=20% Similarity=0.082 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHhc--C---CCeEEEcCCCchhHHHhHHhHHHHHhcC
Q 006500 149 TPIQAACIPLALT--G---RDICGSAITGSGKTAAFALPTLERLLYR 190 (643)
Q Consensus 149 ~~~Q~~~i~~~l~--g---~d~l~~a~TGsGKT~~~~l~~l~~l~~~ 190 (643)
.|+|...+..+.. + +-+++.||.|.||+.. ...+...++..
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~l-A~~~A~~LlC~ 48 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDF-AQHLAQGLLCE 48 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHH-HHHHHHHHcCC
Confidence 4556666555543 2 4678999999999976 45555555553
No 386
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.17 E-value=0.69 Score=47.71 Aligned_cols=57 Identities=33% Similarity=0.373 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 145 YSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 145 ~~~~~~~Q~~~i~~~l~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
+..+++.|..-+..++. +++++++|+||||||.. +.+++..+- +..+++.+=-|.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip------~~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIP------PEERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCC------chhcEEEEeccccc
Confidence 44577888777665554 68999999999999975 555554431 22356777666666
No 387
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=91.08 E-value=0.15 Score=62.21 Aligned_cols=94 Identities=27% Similarity=0.343 Sum_probs=72.6
Q ss_pred eEEEEeCCHHHHHHHHHHHhhcC-CceEEccCCCC-----------HHHHHHHHHHhhcCCceEEEecccccccCCCCCc
Q 006500 372 KVIIFSGTKQAAHRLKILFGLAA-LKAAELHGNLT-----------QAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439 (643)
Q Consensus 372 ~~LIF~~s~~~~~~l~~~L~~~~-~~~~~lh~~~~-----------~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v 439 (643)
..++|++-...+..+...+.... ..+..+.|.+. ...+..++..|.....++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 35789988777777766665432 12222333221 1246788999999999999999999999999999
Q ss_pred cEEEecCCCCChhHHHHHHhhcccCC
Q 006500 440 QTVINYACPRDLTSYVHRVGRTARAG 465 (643)
Q Consensus 440 ~~VI~~d~p~s~~~y~Qr~GRagR~g 465 (643)
+.|+.++.|.....|+|+.||+-+++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999976643
No 388
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.06 E-value=3.1 Score=48.44 Aligned_cols=16 Identities=31% Similarity=0.219 Sum_probs=14.8
Q ss_pred CCeEEEcCCCchhHHH
Q 006500 163 RDICGSAITGSGKTAA 178 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~ 178 (643)
.++|+.||+|+|||..
T Consensus 204 ~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAI 219 (731)
T ss_pred CceEEECCCCCCHHHH
Confidence 5899999999999976
No 389
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.99 E-value=3.5 Score=42.56 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=23.8
Q ss_pred CeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
...+|||||+|.+... ....+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999988542 2344555566555555555443
No 390
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.98 E-value=1.6 Score=45.11 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=27.1
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeec
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT 311 (643)
...++++|||+||.|... -.+.+.++++.-|...-+|++|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 456899999999998643 345566666665554444444443
No 391
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.92 E-value=0.3 Score=47.97 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=14.9
Q ss_pred eEEEcCCCchhHHHhHHhHHH
Q 006500 165 ICGSAITGSGKTAAFALPTLE 185 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~ 185 (643)
++|.|+.|||||.. +.-++.
T Consensus 1 ~vv~G~pGsGKSt~-i~~~~~ 20 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL-IKKLLK 20 (234)
T ss_pred CEEEcCCCCCHHHH-HHHHHH
Confidence 47899999999985 444443
No 392
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.83 E-value=2.8 Score=43.52 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=27.1
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeec
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT 311 (643)
....+++|+|++|.|-.. ....+.++++..+.... ++++++
T Consensus 111 ~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~-~Ilvth 151 (325)
T PRK08699 111 RGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVV-FLLVSH 151 (325)
T ss_pred cCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCE-EEEEeC
Confidence 456889999999987643 56666667777665443 444444
No 393
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.74 E-value=0.34 Score=57.01 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=76.8
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCce-EEEecccccccCCCCCccEEEec
Q 006500 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD-FLIATDVAARGLDIIGVQTVINY 445 (643)
Q Consensus 367 ~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~-vLvaT~~~~~GlDi~~v~~VI~~ 445 (643)
+....++|||+.-......+...+...++....--+ .++-...+..|.+ ++ +|+-+...+-|+|+-++.||+..
T Consensus 1218 k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ 1292 (1394)
T KOG0298|consen 1218 KNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLV 1292 (1394)
T ss_pred cCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhhee
Confidence 444578999999888888888877777777654443 2334455666765 44 56678889999999999999999
Q ss_pred CCCCChhHHHHHHhhcccCCCccE
Q 006500 446 ACPRDLTSYVHRVGRTARAGREGY 469 (643)
Q Consensus 446 d~p~s~~~y~Qr~GRagR~g~~g~ 469 (643)
++--|+..-.|.+||.+|.|++--
T Consensus 1293 ePiLN~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1293 EPILNPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred ccccCchHHHhhhhhhhhcccccc
Confidence 999999999999999999997643
No 394
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.58 E-value=2.2 Score=51.16 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=33.8
Q ss_pred eEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccc
Q 006500 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (643)
Q Consensus 273 ~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~ 313 (643)
-+||||++|.+-+......+..++...|....+|+.|-+.+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 48999999998766667788888899998889988887754
No 395
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=90.49 E-value=2 Score=39.89 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=64.6
Q ss_pred EEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHhcCC
Q 006500 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246 (643)
Q Consensus 167 ~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~ 246 (643)
+---.|=|||++++=-++..+- .+.+|+|+.=.+.- .-+.++..+....++.+...--+.........
T Consensus 8 vytG~GKGKTTAAlGlalRA~G------~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~---- 75 (172)
T PF02572_consen 8 VYTGDGKGKTTAALGLALRAAG------HGMRVLIVQFLKGG--RYSGELKALKKLPNVEIERFGKGFVWRMNEEE---- 75 (172)
T ss_dssp EEESSSS-HHHHHHHHHHHHHC------TT--EEEEESS--S--S--HHHHHHGGGT--EEEE--TT----GGGHH----
T ss_pred EEeCCCCCchHHHHHHHHHHHh------CCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEEcCCcccccCCCcH----
Confidence 4445788999986555555542 24468888755541 11233333333334433221111000000000
Q ss_pred CcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChH--HHHHHHHHHCCCCceeEEEeeccchhHHHHHHH
Q 006500 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (643)
Q Consensus 247 ~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~--~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 322 (643)
.+ .......++.... .+.-..+++||+||+-..++.|+. ..+..++...|...-+|+..-.+++++.+.+..
T Consensus 76 ~~--~~~~~~~~~~a~~--~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 76 ED--RAAAREGLEEAKE--AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp HH--HHHHHHHHHHHHH--HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SE
T ss_pred HH--HHHHHHHHHHHHH--HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCe
Confidence 00 0000111121111 223457899999999999988864 667788888787777787777788877776653
No 396
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.46 E-value=2.2 Score=47.43 Aligned_cols=108 Identities=20% Similarity=0.335 Sum_probs=71.9
Q ss_pred EEEEeCCHHHHHHHHHHHhh----c-CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecc-----ccccc-CCCCCccE
Q 006500 373 VIIFSGTKQAAHRLKILFGL----A-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAARG-LDIIGVQT 441 (643)
Q Consensus 373 ~LIF~~s~~~~~~l~~~L~~----~-~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~G-lDi~~v~~ 441 (643)
+||++||++.|..+.+.+.. . ++.+..++|+++...+...++. | .+|||+|+ .+.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 89999999999988876653 3 5778999999998888766655 6 99999995 45566 89999999
Q ss_pred EEe------cCCCCChhHHHHHHhhcccCCCccEEEEEeccCcHHHHHHHHHHh
Q 006500 442 VIN------YACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (643)
Q Consensus 442 VI~------~d~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~l~~i~~~~ 489 (643)
+|. +|+ ....-+..+...-. .-.-.++++-.=...+..+.+..
T Consensus 178 lVlDEADrmLd~--Gf~~~i~~I~~~~p---~~~qtllfSAT~~~~i~~l~~~~ 226 (513)
T COG0513 178 LVLDEADRMLDM--GFIDDIEKILKALP---PDRQTLLFSATMPDDIRELARRY 226 (513)
T ss_pred EEeccHhhhhcC--CCHHHHHHHHHhCC---cccEEEEEecCCCHHHHHHHHHH
Confidence 884 443 23333333333222 23445555543222455555544
No 397
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=90.42 E-value=0.57 Score=46.90 Aligned_cols=54 Identities=19% Similarity=0.100 Sum_probs=32.5
Q ss_pred HHHHHhcC----CCeE-EEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 155 CIPLALTG----RDIC-GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 155 ~i~~~l~g----~d~l-~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
.+..++.| ..+. ++|+.|||||...+..++...+.......+.++++|......
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f 84 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF 84 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC
Confidence 66777765 3455 999999999965333333333332222335578888765543
No 398
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.35 E-value=0.53 Score=53.61 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=21.1
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCc
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~ 303 (643)
....+++||||||.|... -...+...+...|...
T Consensus 116 ~g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~t 149 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHV 149 (725)
T ss_pred cCCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCce
Confidence 357889999999987643 2334444455444433
No 399
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.26 E-value=1.1 Score=47.88 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.5
Q ss_pred CCeEEEcCCCchhHHH
Q 006500 163 RDICGSAITGSGKTAA 178 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~ 178 (643)
+.+++.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 6799999999999975
No 400
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.26 E-value=3.1 Score=45.43 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=66.4
Q ss_pred CceEEEEeCCHHHHHHHHHHHhhc----CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecc-----ccc-ccCCCCCc
Q 006500 370 TSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIGV 439 (643)
Q Consensus 370 ~~~~LIF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~GlDi~~v 439 (643)
+..+||.++|++.+..+...+... ++...+++|+.+...+.+.+++ -++|+|+|. .+. --+|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 457999999999999998777654 5668899999999887776652 578999995 333 34788899
Q ss_pred cEEEe--------cCCCCChhHHHHHHhhccc
Q 006500 440 QTVIN--------YACPRDLTSYVHRVGRTAR 463 (643)
Q Consensus 440 ~~VI~--------~d~p~s~~~y~Qr~GRagR 463 (643)
.++|. .++-......++.++|..|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 99883 2223355666777777666
No 401
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.24 E-value=0.23 Score=49.95 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=18.6
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
..|+++.||||||||+. .-.|.+++
T Consensus 97 KSNILLiGPTGsGKTlL--AqTLAk~L 121 (408)
T COG1219 97 KSNILLIGPTGSGKTLL--AQTLAKIL 121 (408)
T ss_pred eccEEEECCCCCcHHHH--HHHHHHHh
Confidence 45899999999999985 33444544
No 402
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.16 E-value=1 Score=49.03 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=21.6
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeE
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i 306 (643)
...+++||||||.|.... .+.+..++...+....+|
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEE
Confidence 567899999999886432 334444555544433333
No 403
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.14 E-value=1.5 Score=53.16 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=62.9
Q ss_pred CCceEEEEeCCHHHHHHHHHHHhh----cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEeccc-ccccCCCCCccEEE
Q 006500 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-AARGLDIIGVQTVI 443 (643)
Q Consensus 369 ~~~~~LIF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~-~~~GlDi~~v~~VI 443 (643)
.+.+++|.+||...+..+...|.. .++.+..++|..+..++..++..+.+|..+|||+|.. +...+.+..+.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 367899999999999888776653 3578889999999999999999999999999999964 44556777888877
Q ss_pred e
Q 006500 444 N 444 (643)
Q Consensus 444 ~ 444 (643)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 404
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=1.1 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.9
Q ss_pred HHHhcC-----CCeEEEcCCCchhHHH
Q 006500 157 PLALTG-----RDICGSAITGSGKTAA 178 (643)
Q Consensus 157 ~~~l~g-----~d~l~~a~TGsGKT~~ 178 (643)
|-.++| +.+|+.||.|+|||+.
T Consensus 235 Pe~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 235 PEFFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred HHHHhhcccccceeeeeCCCCCcHHHH
Confidence 445555 7899999999999974
No 405
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.12 E-value=1.1 Score=44.33 Aligned_cols=87 Identities=13% Similarity=0.230 Sum_probs=64.4
Q ss_pred CCceEEccCCCCHHHHHHHHHHhhcCC----ceEEEecccccccCCCCCccEEEecCCCCChhHHHHHHhh--cccCCCc
Q 006500 394 ALKAAELHGNLTQAQRLEALELFRKQH----VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGR--TARAGRE 467 (643)
Q Consensus 394 ~~~~~~lh~~~~~~~R~~~l~~F~~g~----~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR--agR~g~~ 467 (643)
++.+..++|+.+... -.|.++. ..|+|+=+.++||+.+++..+....--+.+..++.|| || .-|.|-.
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~gY~ 183 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPGYE 183 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCcccc
Confidence 577778886655433 2344443 7899999999999999999999999999988888887 44 3466777
Q ss_pred cEEEEEeccCcHHHHHHHH
Q 006500 468 GYAVTFVTDNDRSLLKAIA 486 (643)
Q Consensus 468 g~~~~l~~~~d~~~l~~i~ 486 (643)
+.|.++.++.-...+..|.
T Consensus 184 dl~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHIA 202 (239)
T ss_pred cceEEecCHHHHHHHHHHH
Confidence 8888888765555444443
No 406
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.08 E-value=1.8 Score=42.44 Aligned_cols=49 Identities=18% Similarity=0.105 Sum_probs=27.4
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 217 (643)
|..+++.|++|+|||......+.+.+ .. +..++++.. -+.+.++.+...
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~-~~-----g~~~~~is~-e~~~~~i~~~~~ 68 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGL-RD-----GDPVIYVTT-EESRESIIRQAA 68 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHH-hc-----CCeEEEEEc-cCCHHHHHHHHH
Confidence 56788999999999975333333333 22 123566653 233344444433
No 407
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=3.4 Score=44.66 Aligned_cols=68 Identities=22% Similarity=0.088 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHH----Hhc--------CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCe
Q 006500 130 LNLSRPLLRACEALGYSKPTPIQAACIPL----ALT--------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI 197 (643)
Q Consensus 130 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~----~l~--------g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 197 (643)
+|.+..-++.+...|.-.-.+.=..++.. +.+ -..+++.||.|||||..+.-.++. ...|
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~--------S~FP 565 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS--------SDFP 565 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh--------cCCC
Confidence 57888888877777665544443333322 211 136889999999999643222221 1234
Q ss_pred EEEEEcCc
Q 006500 198 RVLILTPT 205 (643)
Q Consensus 198 ~vLil~Pt 205 (643)
-+=|+.|.
T Consensus 566 FvKiiSpe 573 (744)
T KOG0741|consen 566 FVKIISPE 573 (744)
T ss_pred eEEEeChH
Confidence 46677775
No 408
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=90.06 E-value=1.5 Score=45.37 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=29.8
Q ss_pred hHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 256 RMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 256 ~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
.+...+... ......+++|||+||.|... -.+.+.++++..| ..-+|++|
T Consensus 111 ~i~~~l~~~--p~~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 111 EIKRFLSRP--PLEAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred HHHHHHccC--cccCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEE
Confidence 344444432 22457899999999988543 3455666666655 44344443
No 409
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.98 E-value=0.39 Score=53.91 Aligned_cols=58 Identities=22% Similarity=0.115 Sum_probs=44.4
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEec
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g 232 (643)
.++++.||||||||..+.+|-+-.+ + .-++|+=|--++........++ .|.+|.++..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~---~-----~S~VV~DpKGEl~~~Ta~~R~~----~G~~V~vfdP 216 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW---E-----DSVVVHDIKLENYELTSGWREK----QGQKVFVWEP 216 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC---C-----CCEEEEeCcHHHHHHHHHHHHH----CCCeEEEEeC
Confidence 5789999999999999999988653 1 2389999999998777666655 3666665543
No 410
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.96 E-value=1.6 Score=46.17 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=19.4
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHH
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l 187 (643)
.|+-+++.||+|+|||.. +..+.+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL-~~~i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL-LQKIAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHH-HHHHHHhh
Confidence 478899999999999975 33344443
No 411
>PRK13764 ATPase; Provisional
Probab=89.94 E-value=0.54 Score=52.54 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=20.5
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
.+++++++|+||||||+. +..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 357899999999999975 455555553
No 412
>PRK09087 hypothetical protein; Validated
Probab=89.86 E-value=1 Score=44.10 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=24.7
Q ss_pred EEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccc
Q 006500 274 VLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (643)
Q Consensus 274 ~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~ 313 (643)
+|+||++|.+. .-...+..+++.+......++++++.+
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~ 127 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLW 127 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 79999999763 235667777776665444456655543
No 413
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.79 E-value=0.52 Score=48.98 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=14.8
Q ss_pred CCeEEEcCCCchhHHH
Q 006500 163 RDICGSAITGSGKTAA 178 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~ 178 (643)
+|+++-||+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7999999999999975
No 414
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.77 E-value=0.82 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.062 Sum_probs=17.0
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 164 DICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
-+|+.||.|.|||.++ ..+...+.
T Consensus 40 ayLf~Gp~G~GKTt~A-r~lAk~L~ 63 (563)
T PRK06647 40 AYIFSGPRGVGKTSSA-RAFARCLN 63 (563)
T ss_pred EEEEECCCCCCHHHHH-HHHHHhhc
Confidence 4789999999999863 33444443
No 415
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.73 E-value=1.7 Score=47.28 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=31.8
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l 219 (643)
|.-+++.|++|+|||+. ++-+...+... +.+++++.-- +...|+......+
T Consensus 80 Gs~~lI~G~pG~GKTtL-~lq~a~~~a~~-----g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTL-LLQVAARLAAA-----GGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHH-HHHHHHHHHhc-----CCeEEEEEcc-ccHHHHHHHHHHc
Confidence 45677999999999975 44444444322 2357887743 4556666555543
No 416
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=89.71 E-value=0.47 Score=55.48 Aligned_cols=63 Identities=21% Similarity=0.219 Sum_probs=39.0
Q ss_pred EECchhHHHHHhccCccCCCCeeEEEEeCCchhcc-------CCh---HHHHHHHHHHCCCCceeEEEeeccchh
Q 006500 251 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-------LGF---SAEIHELVRLCPKRRQTMLFSATLTED 315 (643)
Q Consensus 251 v~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~-------~g~---~~~~~~i~~~~~~~~q~i~~SAT~~~~ 315 (643)
|+.+++=+.++... ..-....++.+||.+-+.- .-+ ...+..++.-++...|+++.+||..++
T Consensus 345 vgEaERqlrllFee--A~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 345 VGEAERQLRLLFEE--AQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred cCcHHHHHHHHHHH--HhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 55666655555431 2234567899999994431 113 344444555567788999999997543
No 417
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.67 E-value=0.82 Score=47.79 Aligned_cols=63 Identities=27% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 137 LRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 137 ~~~l~~~g~~~~~~~Q~~~i~~~l~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
+..+...|+ +++.+...+..+.. +.+++++|+||||||.. +-.++ .+... ..+++++--+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~-~~i~~-----~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALL-ALVAP-----DERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHH-ccCCC-----CCcEEEECCccee
Confidence 444455555 55677777776665 56999999999999974 33333 32221 2246777777777
No 418
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.60 E-value=1.8 Score=45.76 Aligned_cols=50 Identities=26% Similarity=0.267 Sum_probs=30.6
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 218 (643)
|.-+++.|++|+|||+. ++-+...+... +.+++++.-. +...|+......
T Consensus 82 GslvLI~G~pG~GKStL-llq~a~~~a~~-----g~~VlYvs~E-Es~~qi~~Ra~r 131 (372)
T cd01121 82 GSVILIGGDPGIGKSTL-LLQVAARLAKR-----GGKVLYVSGE-ESPEQIKLRADR 131 (372)
T ss_pred CeEEEEEeCCCCCHHHH-HHHHHHHHHhc-----CCeEEEEECC-cCHHHHHHHHHH
Confidence 45677999999999975 44444444322 2358887654 334565554444
No 419
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.56 E-value=1.7 Score=46.15 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=32.3
Q ss_pred CeeEEEEeCCchhccC-ChHHHHHHHHHHCCCCc-eeEEEeeccchhHH
Q 006500 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCPKRR-QTMLFSATLTEDVD 317 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~-g~~~~~~~i~~~~~~~~-q~i~~SAT~~~~~~ 317 (643)
++++++||.++.+... .....+..+++.+.... |+++.|..+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 5779999999988764 35666667776665443 66666666665544
No 420
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.54 E-value=2.8 Score=41.34 Aligned_cols=38 Identities=32% Similarity=0.286 Sum_probs=24.6
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
.|.-++++|++|+|||.. ++-++.++.... +.++++++
T Consensus 12 ~G~l~lI~G~~G~GKT~~-~~~~~~~~~~~~----g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAF-ALNIAENIAKKQ----GKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHHhC----CCceEEEe
Confidence 456788999999999965 444444443321 22477777
No 421
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.49 E-value=2.5 Score=44.50 Aligned_cols=25 Identities=28% Similarity=0.126 Sum_probs=17.6
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
+.+++.||.|+|||.+ ...+...+.
T Consensus 37 ~~~Ll~G~~G~GKt~~-a~~la~~l~ 61 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSI-ARIFAKALN 61 (355)
T ss_pred eEEEEECCCCCCHHHH-HHHHHHHhc
Confidence 3578999999999975 444444443
No 422
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.34 E-value=1.6 Score=49.44 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=25.5
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeec
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT 311 (643)
+...+++||||||.|... -.+.+..++...|... +++|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCe-EEEEEeC
Confidence 567889999999998643 2334555555544433 4445555
No 423
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.34 E-value=0.2 Score=46.95 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=28.6
Q ss_pred HHhcCCCcEEEECchhHHHHHhccCcc-CCCCeeEEEEeCCchhcc
Q 006500 241 TALRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLE 285 (643)
Q Consensus 241 ~~l~~~~~Ivv~Tp~~L~~~l~~~~~~-~l~~i~~lVvDEah~l~~ 285 (643)
......+||||+++..|++........ ....-.+|||||||.|.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 334556899999999887653322111 122346999999999875
No 424
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.32 E-value=0.51 Score=45.24 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=23.3
Q ss_pred eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
++++||||||||+. +..++..+.... +.+++.+--..++
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~~~----~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINKNK----THHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhhcC----CcEEEEEcCCccc
Confidence 67999999999986 444555543221 2245555544343
No 425
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.28 E-value=5.2 Score=42.00 Aligned_cols=143 Identities=22% Similarity=0.145 Sum_probs=60.9
Q ss_pred EEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHH-HHH---HHHHHhhcCCceEEEE--ecCCChHHH
Q 006500 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ-VHS---MIEKIAQFTDIRCCLV--VGGLSTKMQ 239 (643)
Q Consensus 166 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q-~~~---~~~~l~~~~~~~v~~~--~g~~~~~~~ 239 (643)
|+.++.|+|||.+..+.++..+...+. ...++++ ||...+.. +.. .+..+... .+.+... ....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~---~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----- 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP---GRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRK----- 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-----EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSE-----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC---CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCc-----
Confidence 577899999999877777777665542 1245555 65544443 222 23332222 1222211 1110
Q ss_pred HHHhcCCCcEEEECchh--HHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccc--hh
Q 006500 240 ETALRSMPDIVVATPGR--MIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT--ED 315 (643)
Q Consensus 240 ~~~l~~~~~Ivv~Tp~~--L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~--~~ 315 (643)
..+.++..|.+.+... -...+.. ..+.++++||+-.+.+.-+...+...+..... ...+++|.|+. ..
T Consensus 71 -~~~~nG~~i~~~~~~~~~~~~~~~G------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~ 142 (384)
T PF03237_consen 71 -IILPNGSRIQFRGADSPDSGDNIRG------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGW 142 (384)
T ss_dssp -EEETTS-EEEEES-----SHHHHHT------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSH
T ss_pred -EEecCceEEEEeccccccccccccc------cccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCc
Confidence 0013444566655321 1122222 35779999998877654344444333333322 22225555443 33
Q ss_pred HHHHHHHhcCC
Q 006500 316 VDELIKLSLTK 326 (643)
Q Consensus 316 ~~~~~~~~~~~ 326 (643)
+..+.......
T Consensus 143 ~~~~~~~~~~~ 153 (384)
T PF03237_consen 143 FYEIFQRNLDD 153 (384)
T ss_dssp HHHHHHHHHCT
T ss_pred eeeeeehhhcC
Confidence 44444444333
No 426
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.24 E-value=5.1 Score=40.38 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=22.9
Q ss_pred HHHHHHhcC---CCeEEEcCCCchhHHHhHHhHHHHHhc
Q 006500 154 ACIPLALTG---RDICGSAITGSGKTAAFALPTLERLLY 189 (643)
Q Consensus 154 ~~i~~~l~g---~d~l~~a~TGsGKT~~~~l~~l~~l~~ 189 (643)
..++.+... +++++.||+|+|||+. +-++..++.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl--~~~l~~~~~ 136 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL--LRDLARILS 136 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH--HHHHhCccC
Confidence 335555543 5789999999999974 455555443
No 427
>PF12846 AAA_10: AAA-like domain
Probab=89.19 E-value=1.1 Score=45.77 Aligned_cols=43 Identities=33% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~ 210 (643)
++++++.|+||||||... ..++..+.... ..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~-~~l~~~~~~~g-----~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL-KNLLEQLIRRG-----PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHHHcC-----CCEEEEcCCchHHH
Confidence 467999999999999874 46666655443 35888888766644
No 428
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.09 E-value=2.6 Score=46.40 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=23.2
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeec
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT 311 (643)
.....++||||||.|....+ +.+...+...|.. -++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~-~v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPR-TIFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCC-eEEEEEEC
Confidence 45678999999998764333 3334444443333 33444333
No 429
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.01 E-value=2.5 Score=41.65 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=29.8
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l 219 (643)
|.-+++.|++|+|||......+.+.+ .+ +.+++++.-- +-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~-~~-----g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL-KQ-----GKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH-hC-----CCEEEEEEcC-CCHHHHHHHHHHC
Confidence 45677999999999976433334333 22 2346666543 3334555555553
No 430
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.96 E-value=2.8 Score=42.10 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=23.0
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
|.-+++.|++|+|||+..+..+.+.+ .. +.++++++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a-~~-----Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQA-SR-----GNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-hC-----CCcEEEEE
Confidence 46678999999999975333333333 22 22477766
No 431
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=88.88 E-value=1.7 Score=47.81 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=18.3
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERL 187 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l 187 (643)
.+.+++.||+|+|||+. .-.+.+.+
T Consensus 216 p~GILLyGPPGTGKT~L-AKAlA~eL 240 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI-AKAVANSL 240 (512)
T ss_pred CcceEEECCCCCcHHHH-HHHHHHhh
Confidence 46799999999999985 34444443
No 432
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.87 E-value=0.49 Score=52.28 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHh----cCCCeEEEcCCCchhHHHhHHhHHHHH
Q 006500 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERL 187 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l----~g~d~l~~a~TGsGKT~~~~l~~l~~l 187 (643)
+|+.||...+..+. .|+-.|+..|||+|||+..+-.++..|
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 58899988876654 489899999999999988665555544
No 433
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.71 E-value=0.3 Score=49.39 Aligned_cols=51 Identities=29% Similarity=0.232 Sum_probs=32.7
Q ss_pred HHHHHHHH-hcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 152 QAACIPLA-LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 152 Q~~~i~~~-l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
..+.+..+ ..+.+++++|+||||||+. +-.++..+-.. ..+++++-.+.++
T Consensus 116 ~~~~l~~~v~~~~~ili~G~tGSGKTT~-l~all~~i~~~-----~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILISGPTGSGKTTL-LNALLEEIPPE-----DERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHCHHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT-----TSEEEEEESSS-S
T ss_pred HHHHHhhccccceEEEEECCCccccchH-HHHHhhhcccc-----ccceEEeccccce
Confidence 33344333 3467899999999999986 45555554332 2357888777777
No 434
>PHA00729 NTP-binding motif containing protein
Probab=88.59 E-value=3 Score=40.59 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=36.0
Q ss_pred cEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccC-ChH----HHHHHHHHHCCCCceeEEEeeccchhHHHHHHH
Q 006500 248 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFS----AEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (643)
Q Consensus 248 ~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~-g~~----~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 322 (643)
..++.+...|+..+.... -....+.++|||++-.-+.. .+. .....+...+....+++.|...-+.++...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~-~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAI-DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHH-hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 444555555555554321 11234568999995432211 111 112223333333456677777666666665554
No 435
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=88.32 E-value=0.63 Score=35.18 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=18.4
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHh
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLL 188 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~ 188 (643)
|...++.+++|||||.. +-++..++
T Consensus 23 g~~tli~G~nGsGKSTl--lDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL--LDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHHH
Confidence 45688999999999984 44554444
No 436
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=88.21 E-value=3.7 Score=44.90 Aligned_cols=147 Identities=15% Similarity=0.066 Sum_probs=81.8
Q ss_pred CCCHHHHHHHHHHhc------C----CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 006500 147 KPTPIQAACIPLALT------G----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~------g----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 216 (643)
.+-|+|.=++-.++. | +..+|..|-+-|||......++..++... ..+-.+.|++|+.+-+.+.++.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--RSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--hcCCcEEEEeccHHHHHHhhHHH
Confidence 478999999998884 1 35788999999999654422333332222 23456999999999999888887
Q ss_pred HHHhhcCCceEEEEecCCChHHHHHHhcCCCcEEEECch---hHHHHHh-ccCccCCCCeeEEEEeCCchhccCChHHHH
Q 006500 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG---RMIDHLR-NSMSVDLDDLAVLILDEADRLLELGFSAEI 292 (643)
Q Consensus 217 ~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv~Tp~---~L~~~l~-~~~~~~l~~i~~lVvDEah~l~~~g~~~~~ 292 (643)
+....... + .........+....+.. ..+..+. +....+-.+..+.|+||.|.....+ ..+
T Consensus 139 r~mv~~~~--------~-----l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~ 203 (546)
T COG4626 139 RDMVKRDD--------D-----LRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMY 203 (546)
T ss_pred HHHHHhCc--------c-----hhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHH
Confidence 76543222 0 00001111111111111 1111111 1222334456799999999866542 444
Q ss_pred HHHHHHC--CCCceeEEEee
Q 006500 293 HELVRLC--PKRRQTMLFSA 310 (643)
Q Consensus 293 ~~i~~~~--~~~~q~i~~SA 310 (643)
..+..-+ .+..+++..|.
T Consensus 204 ~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 204 SEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHhhhccCcCceEEEEec
Confidence 4444433 24456666664
No 437
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=88.16 E-value=5.7 Score=41.35 Aligned_cols=45 Identities=27% Similarity=0.349 Sum_probs=34.0
Q ss_pred CeeEEEEeCCchhccCC--hHHHHHHHHHHCCCCceeEEEeeccchh
Q 006500 271 DLAVLILDEADRLLELG--FSAEIHELVRLCPKRRQTMLFSATLTED 315 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~g--~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 315 (643)
.--++|+|-|+.+-+++ ....+..+-..++.+.-.|++|+++.+.
T Consensus 115 ~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 115 QKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred ceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 34589999999998776 4455666666777776678999998764
No 438
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.09 E-value=2 Score=50.33 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.5
Q ss_pred CCCeEEEcCCCchhHHH
Q 006500 162 GRDICGSAITGSGKTAA 178 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~ 178 (643)
+..+++.||+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45688999999999975
No 439
>PRK14701 reverse gyrase; Provisional
Probab=88.08 E-value=2.4 Score=53.35 Aligned_cols=61 Identities=20% Similarity=0.167 Sum_probs=53.2
Q ss_pred CCceEEEEeCCHHHHHHHHHHHhh------cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEeccc
Q 006500 369 FTSKVIIFSGTKQAAHRLKILFGL------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (643)
Q Consensus 369 ~~~~~LIF~~s~~~~~~l~~~L~~------~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~ 429 (643)
.+.++||.+||+..+..+...|.. .++.+..+||+++..++..+++.+.+|..+|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999988887765 2567889999999999999999999999999999964
No 440
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=88.06 E-value=2.2 Score=48.16 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=25.7
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEe
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~S 309 (643)
.+-.++|+|||..-++..-...+.+.+..+.+.+.+++.+
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 3446899999988887766667766665444554444433
No 441
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.95 E-value=1.5 Score=51.09 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=26.1
Q ss_pred eeEEEEeCCchhccC-------C-hHHHHHHHHHHC---CCCceeEEEeeccchh
Q 006500 272 LAVLILDEADRLLEL-------G-FSAEIHELVRLC---PKRRQTMLFSATLTED 315 (643)
Q Consensus 272 i~~lVvDEah~l~~~-------g-~~~~~~~i~~~~---~~~~q~i~~SAT~~~~ 315 (643)
..+|++||+|.+... + ....+.+++..+ .....++++.||-.++
T Consensus 547 p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 547 PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 468999999998621 1 122334444443 2445678888886543
No 442
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.90 E-value=3.5 Score=48.14 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.2
Q ss_pred CCCeEEEcCCCchhHHH
Q 006500 162 GRDICGSAITGSGKTAA 178 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~ 178 (643)
++.+++.||+|+|||+.
T Consensus 212 ~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CceEEEECCCCCChHHH
Confidence 57899999999999974
No 443
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.84 E-value=3.6 Score=42.58 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=24.7
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeec
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT 311 (643)
....+++|||+||.|... -.+.+.+.++..|... ++++.++
T Consensus 91 ~~~~kv~iI~~ad~m~~~-a~naLLK~LEepp~~t-~~il~~~ 131 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQ-AQNAFLKTIEEPPKGV-FIILLCE 131 (313)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHhcCCCCCe-EEEEEeC
Confidence 456889999999988643 2344555555444333 4444444
No 444
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.77 E-value=2.3 Score=48.58 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=37.1
Q ss_pred eEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccc
Q 006500 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (643)
Q Consensus 273 ~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~ 313 (643)
=++|+|.-|.+.+.-....+..++++.|.+...++.|-+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 48999999999998888999999999999999999988755
No 445
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.55 E-value=2 Score=38.76 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=26.1
Q ss_pred CeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEee
Q 006500 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SA 310 (643)
+-.++++||.-.-++......+..++..+. . +++++.
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~t 124 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVS 124 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEE
Confidence 456899999998887777777777776652 2 455544
No 446
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=87.55 E-value=3.2 Score=38.77 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=41.0
Q ss_pred CCeeEEEEeCCchhccCCh--HHHHHHHHHHCCCCceeEEEeeccchhHHHHHHH
Q 006500 270 DDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~--~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 322 (643)
..+++||+||.--.+.+|+ .+.+..+++.-|...-+|+..-..++.+.+++.+
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 3689999999999888775 4677778887777766776666778888777664
No 447
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=87.53 E-value=2.5 Score=47.24 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=65.7
Q ss_pred CCceEEEEeCCH----HHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccc-cccCCCCCccEEE
Q 006500 369 FTSKVIIFSGTK----QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVI 443 (643)
Q Consensus 369 ~~~~~LIF~~s~----~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~-~~GlDi~~v~~VI 443 (643)
.+..+.+-.||- +.+..+..+|...|+.+..+.|.+....|..++....+|+++++|.|-++ ...+++.+.-+||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 356788889985 45556777888889999999999999999999999999999999999877 5788888888887
Q ss_pred e
Q 006500 444 N 444 (643)
Q Consensus 444 ~ 444 (643)
.
T Consensus 390 i 390 (677)
T COG1200 390 I 390 (677)
T ss_pred E
Confidence 5
No 448
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.50 E-value=5.5 Score=42.27 Aligned_cols=130 Identities=19% Similarity=0.189 Sum_probs=75.5
Q ss_pred eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEc-C-cHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHH
Q 006500 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT-P-TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~-P-tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (643)
++.+|=-|||||++ +--+..++.+. +.++++++ - .|..| +++++.++...++.+.....+.++..-
T Consensus 103 ImmvGLQGsGKTTt-~~KLA~~lkk~-----~~kvllVaaD~~RpAA---~eQL~~La~q~~v~~f~~~~~~~Pv~I--- 170 (451)
T COG0541 103 ILMVGLQGSGKTTT-AGKLAKYLKKK-----GKKVLLVAADTYRPAA---IEQLKQLAEQVGVPFFGSGTEKDPVEI--- 170 (451)
T ss_pred EEEEeccCCChHhH-HHHHHHHHHHc-----CCceEEEecccCChHH---HHHHHHHHHHcCCceecCCCCCCHHHH---
Confidence 66899999999987 33333333332 12344443 3 34444 345666666566655433112111110
Q ss_pred hcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc-cCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHH
Q 006500 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (643)
Q Consensus 243 l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~-~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 321 (643)
....+.. +....+++||||=|-|+- +...-..+..|...+.+.--++.+=|+...+....+.
T Consensus 171 --------------ak~al~~---ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~ 233 (451)
T COG0541 171 --------------AKAALEK---AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAK 233 (451)
T ss_pred --------------HHHHHHH---HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHH
Confidence 0111111 123346789999998875 4446677788888887777778888888887777666
Q ss_pred Hh
Q 006500 322 LS 323 (643)
Q Consensus 322 ~~ 323 (643)
.|
T Consensus 234 aF 235 (451)
T COG0541 234 AF 235 (451)
T ss_pred HH
Confidence 54
No 449
>PRK04328 hypothetical protein; Provisional
Probab=87.49 E-value=4.7 Score=40.19 Aligned_cols=51 Identities=18% Similarity=0.051 Sum_probs=30.7
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l 219 (643)
|.-+++.|++|+|||+..+..+.+.+ ... .++++++ +-+-..++.+.+..+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~-~~g-----e~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGL-QMG-----EPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-hcC-----CcEEEEE-eeCCHHHHHHHHHHc
Confidence 56788999999999975444444443 222 2356665 444445555555554
No 450
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.43 E-value=1.2 Score=44.26 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=14.0
Q ss_pred CCeEEEcCCCchhHHH
Q 006500 163 RDICGSAITGSGKTAA 178 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~ 178 (643)
-++++.||+|.|||+.
T Consensus 53 DHvLl~GPPGlGKTTL 68 (332)
T COG2255 53 DHVLLFGPPGLGKTTL 68 (332)
T ss_pred CeEEeeCCCCCcHHHH
Confidence 3688999999999974
No 451
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.42 E-value=0.68 Score=52.72 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=41.5
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEe
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~ 231 (643)
.++++.||||||||..|.+|-+-.+ + ..++|+=|--++........++ .|..|.++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~---~-----gS~VV~DpKGE~~~~Ta~~R~~----~G~~V~~Fn 196 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF---K-----GSVIALDVKGELFELTSRARKA----SGDAVFKFA 196 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC---C-----CCEEEEeCCchHHHHHHHHHHh----CCCEEEEec
Confidence 5899999999999999999986543 1 1389999999997766555544 355555443
No 452
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.40 E-value=0.55 Score=42.64 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=63.8
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHh
Q 006500 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l 243 (643)
.+.+.|++|+|||+. ++-+.+.+....-+ -.-|++|- ++.=....|+++.-+..|....- ..
T Consensus 7 ki~ITG~PGvGKtTl-~~ki~e~L~~~g~k----vgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~l---a~ 68 (179)
T COG1618 7 KIFITGRPGVGKTTL-VLKIAEKLREKGYK----VGGFITPE----------VREGGKRIGFKIVDLATGEEGIL---AR 68 (179)
T ss_pred EEEEeCCCCccHHHH-HHHHHHHHHhcCce----eeeEEeee----------eecCCeEeeeEEEEccCCceEEE---EE
Confidence 578999999999986 67777777654322 23455553 22222334666665553321100 00
Q ss_pred cCCCcEEEECchhHHHHHhccCcc----CCCCeeEEEEeCCchhc--cCChHHHHHHHHHHC
Q 006500 244 RSMPDIVVATPGRMIDHLRNSMSV----DLDDLAVLILDEADRLL--ELGFSAEIHELVRLC 299 (643)
Q Consensus 244 ~~~~~Ivv~Tp~~L~~~l~~~~~~----~l~~i~~lVvDEah~l~--~~g~~~~~~~i~~~~ 299 (643)
.+....-|+-++...+.+..-... -+..-+++||||.--|- ...|...+.+++..-
T Consensus 69 ~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~ 130 (179)
T COG1618 69 VGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSG 130 (179)
T ss_pred cCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCC
Confidence 011233344444443333321100 12335799999999765 445888888877544
No 453
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.38 E-value=3.5 Score=46.37 Aligned_cols=143 Identities=22% Similarity=0.184 Sum_probs=72.8
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEE-EcCcHHHHHHHHHHHHHH-hhcC-----CceEEEEecC
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI-LTPTRELAVQVHSMIEKI-AQFT-----DIRCCLVVGG 233 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLi-l~Ptr~La~Q~~~~~~~l-~~~~-----~~~v~~~~g~ 233 (643)
.|+.+.+.||.|||||++ +.+|++++.... +++++ =.|.+++-.++.+.--.+ .+.+ .+.-.+.||-
T Consensus 493 pGe~vALVGPSGsGKSTi--asLL~rfY~Pts----G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~ 566 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTI--ASLLLRFYDPTS----GRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGL 566 (716)
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhcCCCC----CeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCC
Confidence 478899999999999984 677888775432 23443 367777755554421111 1110 0111112222
Q ss_pred CChHHH--------------HHHhcCCCcEEEECchhHHHHHhcc----CccCCCCeeEEEEeCCchhccCChHHHHHHH
Q 006500 234 LSTKMQ--------------ETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLELGFSAEIHEL 295 (643)
Q Consensus 234 ~~~~~~--------------~~~l~~~~~Ivv~Tp~~L~~~l~~~----~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i 295 (643)
...... ...+..+.+-.|+.-|..+.-=++. ..-.+.+-.++|+|||-.-++..-...+.+.
T Consensus 567 ~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~a 646 (716)
T KOG0058|consen 567 DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEA 646 (716)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHH
Confidence 211111 1111222333333332211000000 0012445668999999988887777777777
Q ss_pred HHHCCCCceeEEEee
Q 006500 296 VRLCPKRRQTMLFSA 310 (643)
Q Consensus 296 ~~~~~~~~q~i~~SA 310 (643)
+..+..+ +++++=|
T Consensus 647 L~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 647 LDRLMQG-RTVLVIA 660 (716)
T ss_pred HHHhhcC-CeEEEEe
Confidence 7777666 4555444
No 454
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=87.24 E-value=2.8 Score=44.85 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=28.9
Q ss_pred cCCcccCCCCHHHHHHHHH---CCCCCCCHHHHHHHHHHhcCCCeEEEcCCCchhHHH
Q 006500 124 ANSFMELNLSRPLLRACEA---LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (643)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~---~g~~~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~ 178 (643)
..+|.+++--....+.+.. +.+..|.-++...+ -..+.+++.||+|+|||+.
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHH
Confidence 3467776544444444332 12222222222221 1357899999999999985
No 455
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=86.94 E-value=0.64 Score=43.71 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=27.7
Q ss_pred CCeeEEEEeCCchhccCChHHHHHHHHHHCCC-CceeEEEeec
Q 006500 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTMLFSAT 311 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~-~~q~i~~SAT 311 (643)
..-.++++||...-++......+..++..+.. ..++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 45678999999988876666666666554433 3556655543
No 456
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=86.89 E-value=0.65 Score=47.94 Aligned_cols=18 Identities=44% Similarity=0.444 Sum_probs=16.1
Q ss_pred cCCCeEEEcCCCchhHHH
Q 006500 161 TGRDICGSAITGSGKTAA 178 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~ 178 (643)
.+.+++++|+||||||+.
T Consensus 143 ~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTF 160 (308)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 468999999999999974
No 457
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=86.88 E-value=1.6 Score=43.34 Aligned_cols=20 Identities=25% Similarity=0.049 Sum_probs=17.0
Q ss_pred HhcCCCeEEEcCCCchhHHH
Q 006500 159 ALTGRDICGSAITGSGKTAA 178 (643)
Q Consensus 159 ~l~g~d~l~~a~TGsGKT~~ 178 (643)
+-.|..+++.|+.|+|||+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34688999999999999974
No 458
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.85 E-value=3.8 Score=48.60 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=14.7
Q ss_pred CCeEEEcCCCchhHHH
Q 006500 163 RDICGSAITGSGKTAA 178 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~ 178 (643)
++.++.||+|+|||..
T Consensus 195 ~n~lL~G~pGvGKT~l 210 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAI 210 (852)
T ss_pred CceEEEcCCCCCHHHH
Confidence 6899999999999976
No 459
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=86.78 E-value=0.31 Score=45.34 Aligned_cols=28 Identities=18% Similarity=0.488 Sum_probs=18.8
Q ss_pred CCeeEEEEeCCchhc--cCChHHHHHHHHH
Q 006500 270 DDLAVLILDEADRLL--ELGFSAEIHELVR 297 (643)
Q Consensus 270 ~~i~~lVvDEah~l~--~~g~~~~~~~i~~ 297 (643)
..-+++|+||.-.|- ..+|...+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 456799999999775 4568888888877
No 460
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.78 E-value=0.94 Score=47.55 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=26.3
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~L 208 (643)
+..++++||||||||+. +..++..+... ...+++.+--..++
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~----~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN----AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC----CCCEEEEEcCChhh
Confidence 56788999999999986 44455544322 12346665554454
No 461
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=86.63 E-value=0.52 Score=50.31 Aligned_cols=48 Identities=31% Similarity=0.329 Sum_probs=34.0
Q ss_pred HHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 006500 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (643)
Q Consensus 158 ~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q 211 (643)
.-...+++++.|.||||||.+ +-+++..+..+. -+++|.=|.-+....
T Consensus 11 ~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~g-----~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 11 KDSENRHILIIGATGSGKTQA-IRHLLDQIRARG-----DRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHTT------EEEEEEETTHHHHH
T ss_pred cchhhCcEEEECCCCCCHHHH-HHHHHHHHHHcC-----CEEEEEECCchHHHH
Confidence 344568999999999999975 677887776653 358888888777443
No 462
>PRK05973 replicative DNA helicase; Provisional
Probab=86.59 E-value=1.3 Score=43.70 Aligned_cols=82 Identities=18% Similarity=0.132 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHH---------HHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEE
Q 006500 131 NLSRPLLRACEALGYSKPTPIQAA---------CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (643)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~~Q~~---------~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLi 201 (643)
+++..+-+....-||..-+-+... ..--+..|.-++|.|++|+|||+. .+-++...... +.+++|
T Consensus 24 ~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~l-alqfa~~~a~~-----Ge~vly 97 (237)
T PRK05973 24 PLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLL-GLELAVEAMKS-----GRTGVF 97 (237)
T ss_pred cHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHH-HHHHHHHHHhc-----CCeEEE
Confidence 444444444455566543322222 222233456788999999999976 44443333332 224666
Q ss_pred EcCcHHHHHHHHHHHHHH
Q 006500 202 LTPTRELAVQVHSMIEKI 219 (643)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l 219 (643)
++-- +-..|+.+.+..+
T Consensus 98 fSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 98 FTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred EEEe-CCHHHHHHHHHHc
Confidence 6432 3345666666654
No 463
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=86.46 E-value=1.1 Score=51.11 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=57.7
Q ss_pred CceEEEEeCCHHHHHHHHHHHhhc-CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccccccCCCCCccEEE
Q 006500 370 TSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (643)
Q Consensus 370 ~~~~LIF~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI 443 (643)
+..+||.+|-+.....+...|... |.++..+|++++..+|.....+..+|+.+|+|+|..+-- .-++++..||
T Consensus 245 GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-~Pf~~LGLII 318 (730)
T COG1198 245 GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-LPFKNLGLII 318 (730)
T ss_pred CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-CchhhccEEE
Confidence 568999999877777666666543 789999999999999999999999999999999976522 2334555555
No 464
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=86.44 E-value=1.8 Score=42.29 Aligned_cols=44 Identities=20% Similarity=0.004 Sum_probs=24.6
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCC-CCCCCeEEEEEcCcH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRP-KRIPAIRVLILTPTR 206 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~vLil~Ptr 206 (643)
|.-+.+.|++|+|||... +.++....... -......++++..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~-~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLC-LQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHH-HHHHHHhhcccccCCCcceEEEEecCC
Confidence 345669999999999764 33333332221 001123577776643
No 465
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=86.42 E-value=7.2 Score=46.42 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=93.5
Q ss_pred HHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHh--cCCC-------------------------CCCCeEEEEEcC
Q 006500 152 QAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL--YRPK-------------------------RIPAIRVLILTP 204 (643)
Q Consensus 152 Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~--~~~~-------------------------~~~~~~vLil~P 204 (643)
|++.|..+..+-|+|-...|=-=.|+-..+.-+..+. .++. -..++++.+|.|
T Consensus 732 ~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~N 811 (1139)
T COG1197 732 HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHN 811 (1139)
T ss_pred HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEec
Confidence 8888988888889998888888888754443332211 1110 145788999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHH----hcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCC
Q 006500 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (643)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~----l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (643)
..+-..++...++.+. +..++++.+|.......+.. ..+.+||+|||. .+.+ .+++.+...+||+-|
T Consensus 812 rV~~Ie~~~~~L~~LV--PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIEt--GIDIPnANTiIIe~A 882 (1139)
T COG1197 812 RVESIEKKAERLRELV--PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIET--GIDIPNANTIIIERA 882 (1139)
T ss_pred chhhHHHHHHHHHHhC--CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eeec--CcCCCCCceEEEecc
Confidence 9999999999999876 67889999999887765544 457899999993 3344 678888899999999
Q ss_pred chh
Q 006500 281 DRL 283 (643)
Q Consensus 281 h~l 283 (643)
|++
T Consensus 883 D~f 885 (1139)
T COG1197 883 DKF 885 (1139)
T ss_pred ccc
Confidence 985
No 466
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.32 E-value=4.9 Score=42.56 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=16.9
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHH
Q 006500 163 RDICGSAITGSGKTAAFALPTLERL 187 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l 187 (643)
+.++++||.|+|||.. ...+...+
T Consensus 40 ~~~L~~G~~G~GKt~~-a~~la~~l 63 (367)
T PRK14970 40 QALLFCGPRGVGKTTC-ARILARKI 63 (367)
T ss_pred eEEEEECCCCCCHHHH-HHHHHHHh
Confidence 3688999999999975 33334343
No 467
>CHL00176 ftsH cell division protein; Validated
Probab=86.27 E-value=3.7 Score=46.66 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=14.5
Q ss_pred CCeEEEcCCCchhHHH
Q 006500 163 RDICGSAITGSGKTAA 178 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~ 178 (643)
+.+++.||+|+|||+.
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5799999999999975
No 468
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.21 E-value=4.6 Score=47.74 Aligned_cols=17 Identities=29% Similarity=0.153 Sum_probs=15.1
Q ss_pred CCeEEEcCCCchhHHHh
Q 006500 163 RDICGSAITGSGKTAAF 179 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~ 179 (643)
+++|+.||+|.|||...
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 58999999999999863
No 469
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=86.14 E-value=2.1 Score=46.26 Aligned_cols=53 Identities=21% Similarity=0.372 Sum_probs=47.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhh----cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecc
Q 006500 372 KVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (643)
Q Consensus 372 ~~LIF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~ 428 (643)
-.|||++|++.+..+.+.|.. .++.+..|.|+|....+.+++.. .-.|+|||.
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 479999999999999999875 48999999999999999999986 567999995
No 470
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=86.12 E-value=2.2 Score=44.53 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=26.0
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeec
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT 311 (643)
....+++||||||.|... -.+.+.++++..|....+|+ .++
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il-~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAIL-LTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEE-EeC
Confidence 456789999999988643 34455566665555444444 443
No 471
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=86.10 E-value=11 Score=39.72 Aligned_cols=110 Identities=18% Similarity=0.191 Sum_probs=57.4
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (643)
.+.+.+.|+.|.|||.. +-++-..+.... ..+ ++--+.+..+++.+..+. |+...-
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~---k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l---- 117 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKR---KRR----VHFHEFMLDVHSRLHQLR-----------GQDDPL---- 117 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCccc---ccc----ccccHHHHHHHHHHHHHh-----------CCCccH----
Confidence 46788999999999974 333322221111 001 244477777777777753 111110
Q ss_pred HhcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHH-CCCCceeEEEeeccchhH
Q 006500 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL-CPKRRQTMLFSATLTEDV 316 (643)
Q Consensus 242 ~l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~-~~~~~q~i~~SAT~~~~~ 316 (643)
..+.+.+.. ...+|.+||.|. .+.+-.-.+..++.. +....-+|..|-++|.++
T Consensus 118 -------------~~va~~l~~-------~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 118 -------------PQVADELAK-------ESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred -------------HHHHHHHHh-------cCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 011222222 355899999994 333323333333333 334556677777776543
No 472
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.07 E-value=0.62 Score=50.21 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=35.1
Q ss_pred HHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 006500 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (643)
Q Consensus 156 i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~ 210 (643)
+|.-...+++++.|+||||||.. +..++..+.... .+++|+=|..++..
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~~-----~~~vi~D~kg~~~~ 84 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRARG-----DRAIIYDPNGGFVS 84 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhcC-----CCEEEEeCCcchhH
Confidence 34444568999999999999975 555565555442 35899999988743
No 473
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.05 E-value=8.2 Score=45.69 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=20.0
Q ss_pred HHHHHHHHh----c--CCCeEEEcCCCchhHHH
Q 006500 152 QAACIPLAL----T--GRDICGSAITGSGKTAA 178 (643)
Q Consensus 152 Q~~~i~~~l----~--g~d~l~~a~TGsGKT~~ 178 (643)
|...|..++ . ..++|+.||.|+|||..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAV 224 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHH
Confidence 555555554 2 25899999999999975
No 474
>PRK06904 replicative DNA helicase; Validated
Probab=86.05 E-value=6.7 Score=43.04 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=55.5
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEE-ec-CCChHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VG-GLSTKMQ 239 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~-~g-~~~~~~~ 239 (643)
|.=+++.|.||.|||.. .+-+..++.... +..|+|++.= .-..|+...+-.. ..++....+ .| ..+....
T Consensus 221 G~LiiIaarPg~GKTaf-alnia~~~a~~~----g~~Vl~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~g~~l~~~e~ 292 (472)
T PRK06904 221 SDLIIVAARPSMGKTTF-AMNLCENAAMAS----EKPVLVFSLE-MPAEQIMMRMLAS--LSRVDQTKIRTGQNLDQQDW 292 (472)
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHhc----CCeEEEEecc-CCHHHHHHHHHHh--hCCCCHHHhccCCCCCHHHH
Confidence 45567899999999964 555544433211 2246666443 3344555443322 223332222 23 2222221
Q ss_pred H------HHhcCCCcEEEE-----CchhHHHHHhccCccCCCCeeEEEEeCCchhcc
Q 006500 240 E------TALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (643)
Q Consensus 240 ~------~~l~~~~~Ivv~-----Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~ 285 (643)
. ..+...+.+.|- |+..+...+.... .....+++||||=.+.|..
T Consensus 293 ~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 293 AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCC
Confidence 1 123234456663 3444443332210 1112578999998887653
No 475
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=85.87 E-value=1.2 Score=54.47 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=42.3
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 217 (643)
.+.+++|.|..|||||.+...-++..++... ......+|||+.|+..+..+...+.
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~-~~~v~~ILvvTFT~aAa~Emk~RI~ 70 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG-PLDVDEILVVTFTKAAAAEMKERIR 70 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC-CCChhHeeeeeccHHHHHHHHHHHH
Confidence 4679999999999999986666777766642 2334569999999988776655544
No 476
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=85.86 E-value=1.8 Score=48.40 Aligned_cols=94 Identities=22% Similarity=0.446 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHh--------cCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006500 148 PTPIQAACIPLAL--------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (643)
Q Consensus 148 ~~~~Q~~~i~~~l--------~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l 219 (643)
+..+-.+++..+. .|+=+|+.||+|-|||-+ .-.+. +.+..
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI-~kSIA-----------------------------~ALnR- 464 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSI-AKSIA-----------------------------RALNR- 464 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccH-HHHHH-----------------------------HHhCC-
Confidence 4455566666553 256688999999999964 12221 11211
Q ss_pred hhcCCceEEEEecCCChHHHHHHhcCCCcEEE-ECchhHHHHHhccCccCCCCeeEEEEeCCchhc
Q 006500 220 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVV-ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (643)
Q Consensus 220 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Ivv-~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~ 284 (643)
+| +.+-.||...... +++.-.-.| +-||++++.|..-..-+ -++.|||+|.+.
T Consensus 465 -kF----fRfSvGG~tDvAe---IkGHRRTYVGAMPGkiIq~LK~v~t~N----PliLiDEvDKlG 518 (906)
T KOG2004|consen 465 -KF----FRFSVGGMTDVAE---IKGHRRTYVGAMPGKIIQCLKKVKTEN----PLILIDEVDKLG 518 (906)
T ss_pred -ce----EEEeccccccHHh---hcccceeeeccCChHHHHHHHhhCCCC----ceEEeehhhhhC
Confidence 11 1233466655433 334333334 56999999987632221 179999999987
No 477
>PHA00012 I assembly protein
Probab=85.79 E-value=8.4 Score=39.50 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=19.3
Q ss_pred eEEEcCCCchhHHHhHHhHHHHHhc
Q 006500 165 ICGSAITGSGKTAAFALPTLERLLY 189 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~~l~~ 189 (643)
.++.|..|||||+.....++..+..
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4689999999998866666666543
No 478
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.69 E-value=13 Score=40.75 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=68.8
Q ss_pred CCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHh----cCC
Q 006500 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSM 246 (643)
Q Consensus 171 TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~ 246 (643)
.+.||+..-++.+.+.+... ..|.+||.+-+.+-|.|++..+. .+.++++.+++|..+.......+ .+.
T Consensus 366 vF~gse~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG----FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred eeeecchhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccC
Confidence 46677766555555544322 34558999999999999988886 34789999999997665544332 345
Q ss_pred CcEEEECchhHHHHHhccCccCCCCeeEEEEeCCc
Q 006500 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (643)
Q Consensus 247 ~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (643)
..|+||| +.|.+ +++|..+.+||-+..-
T Consensus 439 IwvLicT-----dll~R--GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 439 IWVLICT-----DLLAR--GIDFKGVNLVINYDFP 466 (593)
T ss_pred eeEEEeh-----hhhhc--cccccCcceEEecCCC
Confidence 7899999 44555 5888999999986543
No 479
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=85.55 E-value=0.51 Score=51.32 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=30.2
Q ss_pred EECchhHHHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHCC
Q 006500 251 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (643)
Q Consensus 251 v~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~ 300 (643)
+-+||-..++-.. .+...+-++.|+|||-.-+..+....+.++++...
T Consensus 570 vLS~GEqQRLa~A--RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 570 VLSPGEQQRLAFA--RLFYHKPKFAILDECTSAVTEDVEGALYRKCREMG 617 (659)
T ss_pred hcCHHHHHHHHHH--HHHhcCCceEEeechhhhccHHHHHHHHHHHHHcC
Confidence 3456554433222 12344567899999998887777777777766653
No 480
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=85.48 E-value=1.5 Score=49.00 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=20.7
Q ss_pred cCCCeEEEcCCCchhHHHhHHhHHHHHhc
Q 006500 161 TGRDICGSAITGSGKTAAFALPTLERLLY 189 (643)
Q Consensus 161 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 189 (643)
.|+-+.+.||+|||||+ ++-++..++.
T Consensus 360 ~G~~vaIvG~SGsGKST--Ll~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKST--LLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 47788899999999997 4556655543
No 481
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=85.45 E-value=8.8 Score=42.61 Aligned_cols=130 Identities=16% Similarity=0.142 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh-cCCc-eEEEEecCCChHHH
Q 006500 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDI-RCCLVVGGLSTKMQ 239 (643)
Q Consensus 162 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~-~~~~-~v~~~~g~~~~~~~ 239 (643)
.+-.+..-|---|||.. +.|++..++.. ..+.++.+++.-+-.+.-+.+++..-+. +.+- .+...-
T Consensus 202 QkaTVFLVPRRHGKTWf-~VpiIsllL~s---~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k-------- 269 (668)
T PHA03372 202 QKATVFLVPRRHGKTWF-IIPIISFLLKN---IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENK-------- 269 (668)
T ss_pred ccceEEEecccCCceeh-HHHHHHHHHHh---hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeec--------
Confidence 46678888999999974 89999888874 4567899999999888776665543221 1121 111111
Q ss_pred HHHhcCCCcEEEECchhH----HHHHhccCccCCCCeeEEEEeCCchhccCChHHHHHHHHHHC-CCCceeEEEeeccc
Q 006500 240 ETALRSMPDIVVATPGRM----IDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLT 313 (643)
Q Consensus 240 ~~~l~~~~~Ivv~Tp~~L----~~~l~~~~~~~l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~-~~~~q~i~~SAT~~ 313 (643)
+..|.+.-|+.= ...-.+.....-..+.+++|||||-+.. ..+..|+-.+ .++.++|++|.|-+
T Consensus 270 ------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~KiIfISS~Ns 338 (668)
T PHA03372 270 ------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTTKIIFISSTNT 338 (668)
T ss_pred ------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCceEEEEeCCCC
Confidence 112333333221 1111233344556788999999996532 3344444443 35678899998864
No 482
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.26 E-value=1.8 Score=43.75 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.3
Q ss_pred HhcCCCeEEEcCCCchhHHH
Q 006500 159 ALTGRDICGSAITGSGKTAA 178 (643)
Q Consensus 159 ~l~g~d~l~~a~TGsGKT~~ 178 (643)
+..++.++++||+|+|||..
T Consensus 30 ~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHH
T ss_pred HHcCCcEEEECCCCCchhHH
Confidence 44578999999999999985
No 483
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=85.07 E-value=0.52 Score=55.24 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=4.5
Q ss_pred CCHHHHHHHH
Q 006500 132 LSRPLLRACE 141 (643)
Q Consensus 132 l~~~l~~~l~ 141 (643)
|+..|.+..+
T Consensus 737 lD~~La~~Fk 746 (784)
T PF04931_consen 737 LDEQLAAIFK 746 (784)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 484
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=84.85 E-value=2.4 Score=39.52 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=41.4
Q ss_pred CCeeEEEEeCCchhccCChH--HHHHHHHHHCCCCceeEEEeeccchhHHHHHH
Q 006500 270 DDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (643)
Q Consensus 270 ~~i~~lVvDEah~l~~~g~~--~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 321 (643)
..+++||+||.-..++.|+. ..+..+++..|...-+|+..-.+|+++.+.+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 56899999999999988864 67778888888877777777778877766554
No 485
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.79 E-value=3.7 Score=46.83 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=52.2
Q ss_pred CceEEEEeCCHHHHHHHHHHHhhc-----CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecc-----cccc-cCCCCC
Q 006500 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAAR-GLDIIG 438 (643)
Q Consensus 370 ~~~~LIF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~-GlDi~~ 438 (643)
..++||.|||+..+..++..|... ++.+..+||+.+...+...+. ....|||+|. .+.+ .+++..
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~----~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR----QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 458999999999998887765532 788999999988776655443 3578999994 3333 467888
Q ss_pred ccEEE
Q 006500 439 VQTVI 443 (643)
Q Consensus 439 v~~VI 443 (643)
+.+||
T Consensus 150 l~~lV 154 (629)
T PRK11634 150 LSGLV 154 (629)
T ss_pred ceEEE
Confidence 88877
No 486
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.74 E-value=0.94 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=16.4
Q ss_pred CeEEEcCCCchhHHHhHHhHHHH
Q 006500 164 DICGSAITGSGKTAAFALPTLER 186 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~ 186 (643)
=+|++|+|||||+++ +..++.+
T Consensus 129 LviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 129 LVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred eEEEECCCCCCchhh-HHHHhcc
Confidence 366899999999987 4555543
No 487
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.67 E-value=5.8 Score=44.78 Aligned_cols=73 Identities=19% Similarity=0.342 Sum_probs=55.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHHh----cCCCcEEEECchhHHHHHhccCccCCCC
Q 006500 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (643)
Q Consensus 196 ~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~ 271 (643)
+.++||.|+|+..|.++++.+.. .++.+..++|+.+.......+ .+..+|+|||. .+.. .+++..
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~----~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~ar--GIDip~ 325 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLER----HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAAR--GLHIDG 325 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhhc--CCCccC
Confidence 34699999999999999888876 478899999998776554333 35689999993 3333 577888
Q ss_pred eeEEEEeC
Q 006500 272 LAVLILDE 279 (643)
Q Consensus 272 i~~lVvDE 279 (643)
+.+||.-.
T Consensus 326 V~~VInyd 333 (572)
T PRK04537 326 VKYVYNYD 333 (572)
T ss_pred CCEEEEcC
Confidence 88887543
No 488
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=84.40 E-value=3.1 Score=46.77 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=33.1
Q ss_pred EEecCCChHHHHHHhcCCCcEEE-ECchhHHHHHhccCccCCCCeeEEEEeCCchhccCC
Q 006500 229 LVVGGLSTKMQETALRSMPDIVV-ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287 (643)
Q Consensus 229 ~~~g~~~~~~~~~~l~~~~~Ivv-~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~~~g 287 (643)
+-.||....... ++.-.-.| +-||+++..|......+. ++++||.|.|...-
T Consensus 381 ~sLGGvrDEAEI---RGHRRTYIGamPGrIiQ~mkka~~~NP----v~LLDEIDKm~ss~ 433 (782)
T COG0466 381 ISLGGVRDEAEI---RGHRRTYIGAMPGKIIQGMKKAGVKNP----VFLLDEIDKMGSSF 433 (782)
T ss_pred EecCccccHHHh---ccccccccccCChHHHHHHHHhCCcCC----eEEeechhhccCCC
Confidence 345776654443 33333334 459999998876533322 79999999998653
No 489
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=84.35 E-value=2.9 Score=39.66 Aligned_cols=53 Identities=21% Similarity=0.486 Sum_probs=43.4
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHH
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 321 (643)
..+-+++|+||.-.=++......+..++..+......++||.-.-+++..+..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCD 201 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCD 201 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhh
Confidence 34567999999998888778889999999998888889999887777766554
No 490
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=84.34 E-value=6 Score=37.69 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=51.5
Q ss_pred CCceEEEEeCCHHHHHHHHHHHhh----cCCceEEccCCCCHHHHHHHHHHhhcCCceEEEeccc-----c-cccCCCCC
Q 006500 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIG 438 (643)
Q Consensus 369 ~~~~~LIF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~-----~-~~GlDi~~ 438 (643)
.+.++||.+++...+......+.. .++.+..++|+.+..+....+. +...|+|+|.- + ..-+++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456899999999988877655543 4788889999998876654443 56789999952 2 22256777
Q ss_pred ccEEEe
Q 006500 439 VQTVIN 444 (643)
Q Consensus 439 v~~VI~ 444 (643)
++++|.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 888773
No 491
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=84.33 E-value=3.7 Score=46.19 Aligned_cols=70 Identities=20% Similarity=0.074 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEcCCCchhHHHhHHhHHHHHhcCCCC-CCCeEEEEEcCcHHHHHHHHHHHH
Q 006500 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLILTPTRELAVQVHSMIE 217 (643)
Q Consensus 147 ~~~~~Q~~~i~~~l~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~vLil~Ptr~La~Q~~~~~~ 217 (643)
.+..-|..|....+.++--|+.||.|+|||++ .+-++..++..... ...-.+||+|=|...+.|....+-
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~v-tlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLV-TLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceee-hHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 34556999999999999999999999999988 67777777765422 223358999999888888755443
No 492
>PRK13695 putative NTPase; Provisional
Probab=84.33 E-value=9 Score=35.64 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=16.3
Q ss_pred CeEEEcCCCchhHHHhHHhHHHHH
Q 006500 164 DICGSAITGSGKTAAFALPTLERL 187 (643)
Q Consensus 164 d~l~~a~TGsGKT~~~~l~~l~~l 187 (643)
.+++.|+.|+|||+.. ..++..+
T Consensus 2 ~i~ltG~~G~GKTTll-~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLV-LKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH
Confidence 3679999999999863 3344444
No 493
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.32 E-value=5.3 Score=47.32 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=14.6
Q ss_pred CCeEEEcCCCchhHHH
Q 006500 163 RDICGSAITGSGKTAA 178 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~ 178 (643)
.++|+.||+|+|||..
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 5899999999999976
No 494
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.01 E-value=9.4 Score=39.80 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=73.2
Q ss_pred eEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeE-EEEEcCc-HHHHHHHHHHHHHHhhcCCceEEEEecCCChHHHHHH
Q 006500 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR-VLILTPT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (643)
Q Consensus 165 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~-vLil~Pt-r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (643)
+++.+--|+|||++ +.-+..++.+. +.+ +||..-| |+-| ++.++.++...++.+..-+....
T Consensus 104 imfVGLqG~GKTTt-c~KlA~y~kkk-----G~K~~LvcaDTFRagA---fDQLkqnA~k~~iP~ygsyte~d------- 167 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTT-CTKLAYYYKKK-----GYKVALVCADTFRAGA---FDQLKQNATKARVPFYGSYTEAD------- 167 (483)
T ss_pred EEEEeccCCCccee-HHHHHHHHHhc-----CCceeEEeecccccch---HHHHHHHhHhhCCeeEecccccc-------
Confidence 44899999999986 33333333222 223 4444444 2222 44555555444554432111111
Q ss_pred hcCCCcEEEECchhHHHHHhccCccCCCCeeEEEEeCCchhc-cCChHHHHHHHHHHCCCCceeEEEeeccchhHHHHHH
Q 006500 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (643)
Q Consensus 243 l~~~~~Ivv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l~-~~g~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 321 (643)
|-.+...--. .+.-.++++||+|=+-|.- +.+....+.++.+.+.++.-++++-|++.........
T Consensus 168 -----------pv~ia~egv~--~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~ 234 (483)
T KOG0780|consen 168 -----------PVKIASEGVD--RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR 234 (483)
T ss_pred -----------hHHHHHHHHH--HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence 1111111001 2334568899999888765 3456677788888888777778888988877666655
Q ss_pred Hh
Q 006500 322 LS 323 (643)
Q Consensus 322 ~~ 323 (643)
.|
T Consensus 235 aF 236 (483)
T KOG0780|consen 235 AF 236 (483)
T ss_pred HH
Confidence 43
No 495
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=83.99 E-value=3.8 Score=38.37 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=27.9
Q ss_pred CCCeeEEEEeCCchhccCChHHHHHHHHHHCCCCceeEEEee
Q 006500 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (643)
Q Consensus 269 l~~i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~q~i~~SA 310 (643)
+.+-+++++||.-.-++......+.+++..+... .+++++.
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~s 154 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWIT 154 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEe
Confidence 3455799999999888877777777777665443 3444433
No 496
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=83.92 E-value=13 Score=42.21 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=60.6
Q ss_pred CceEEEEeCCHHHHHHHHHHHhhcCCceEEccCCCCHHHHHHHHHHhhcCCceEEEecccc------cccCCCCCccEEE
Q 006500 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIGVQTVI 443 (643)
Q Consensus 370 ~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~~~------~~GlDi~~v~~VI 443 (643)
++.+||.+|++..+......|...|+.+..+||+++..++..++.....|..++|+.|.-- ..-+....+.+||
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iV 132 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVA 132 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEE
Confidence 4578999999999888888888899999999999999999999999999999999887432 1223445666666
No 497
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.89 E-value=3.6 Score=43.82 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=27.4
Q ss_pred CeeEEEEeCCchhccC--------ChHHHHHHHHH----HCCCCceeEEEeeccchhH
Q 006500 271 DLAVLILDEADRLLEL--------GFSAEIHELVR----LCPKRRQTMLFSATLTEDV 316 (643)
Q Consensus 271 ~i~~lVvDEah~l~~~--------g~~~~~~~i~~----~~~~~~q~i~~SAT~~~~~ 316 (643)
+..+++|||+|.++.. ..+...+.++. ....+-++++++||--++.
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e 302 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWE 302 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchH
Confidence 4668889999998731 11222222222 2234558899999976543
No 498
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=83.85 E-value=1.4 Score=50.13 Aligned_cols=59 Identities=19% Similarity=0.118 Sum_probs=42.3
Q ss_pred CCeEEEcCCCchhHHHhHHhHHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEecC
Q 006500 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG 233 (643)
Q Consensus 163 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~ 233 (643)
.++++.||||||||..+.+|-+-.+ + .-++|+=|..++........++ .+.+|.++-..
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~---~-----gS~VV~DpKgEl~~~Ta~~R~~----~G~~V~vfdP~ 283 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKW---G-----GPLVVLDPSTEVAPMVSEHRRD----AGREVIVLDPT 283 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcC---C-----CCEEEEeCcHHHHHHHHHHHHH----CCCeEEEEeCC
Confidence 5899999999999999999975322 1 2388888999997766555443 35566655443
No 499
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=83.73 E-value=3.7 Score=44.98 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=54.4
Q ss_pred CceEEEEeCCHHHHHHHHHHHhhc-----CCceEEccCCCCHHHHHHHHHHhhcCCceEEEecc-----ccc-ccCCCCC
Q 006500 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIG 438 (643)
Q Consensus 370 ~~~~LIF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~GlDi~~ 438 (643)
...+||.+||+..+..+...+... ++.+..++|+.+...+...+. +...|+|+|. .+. ..+++.+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHH
Confidence 347999999999999888766542 678899999999877655444 5678999993 232 4578889
Q ss_pred ccEEEe
Q 006500 439 VQTVIN 444 (643)
Q Consensus 439 v~~VI~ 444 (643)
+++||.
T Consensus 148 l~~lVi 153 (460)
T PRK11776 148 LNTLVL 153 (460)
T ss_pred CCEEEE
Confidence 999884
No 500
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.67 E-value=2.2 Score=42.04 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=26.8
Q ss_pred eeEEEEeCCchhccCChHHHHHHHHHHCCCCc
Q 006500 272 LAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (643)
Q Consensus 272 i~~lVvDEah~l~~~g~~~~~~~i~~~~~~~~ 303 (643)
-+++|+||.=..++..-...+.+++..++...
T Consensus 157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 157 PEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 46999999999999888888888888877664
Done!