Query 006500
Match_columns 643
No_of_seqs 531 out of 3674
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 18:48:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006500.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2126-2130//hhsearch_pdb/006500hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 1.0 1 1 467.3 44.5 363 122-489 53-420 (434)
2 3fmp_B ATP-dependent RNA helic 1.0 1 1 441.7 20.9 364 123-494 90-464 (479)
3 2j0s_A ATP-dependent RNA helic 1.0 1 1 441.5 41.5 369 124-498 36-404 (410)
4 3sqw_A ATP-dependent RNA helic 1.0 1 1 439.7 38.3 366 131-496 27-417 (579)
5 2i4i_A ATP-dependent RNA helic 1.0 1 1 438.7 41.9 365 121-489 11-395 (417)
6 3i5x_A ATP-dependent RNA helic 1.0 1 1 434.4 37.7 366 131-496 78-468 (563)
7 3eiq_A Eukaryotic initiation f 1.0 1 1 430.3 38.0 368 124-497 39-407 (414)
8 1s2m_A Putative ATP-dependent 1.0 1 1 423.0 42.5 367 123-497 19-385 (400)
9 1fuu_A Yeast initiation factor 1.0 1 1 421.9 23.4 364 124-494 20-383 (394)
10 3fht_A ATP-dependent RNA helic 1.0 1 1 418.7 41.3 368 122-497 22-400 (412)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=467.29 Aligned_cols=363 Identities=33% Similarity=0.547 Sum_probs=320.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCC--CCCCEEE
Q ss_conf 66688656899988999999879999978899999998359986898579944689937759999842999--9998189
Q 006500 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIRV 199 (643)
Q Consensus 122 ~~~~~~~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~li~~~TGsGKT~~~~l~~l~~l~~~~~--~~~~~~v 199 (643)
.+..+|.+++|++.+++++..+||..|+++|.++||.++.|+|++++++||||||++|++|+++++..... ...++++
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred CCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 77688523699999999999769999998999999999669988998789998239999999999984453213589648
Q ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEEEC
Q ss_conf 99858289999999999997513894699985698747899974489969998924689988426865788811999818
Q 006500 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (643)
Q Consensus 200 Lil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Iii~Tp~~L~~~l~~~~~~~l~~i~~iViDE 279 (643)
||++||++|+.|+++.+.+++...++++..++||.....+...+..+++|+|+||++|.+++.+. ...+.+++++|+||
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~~~~lVlDE 211 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT-FITFEDTRFVVLDE 211 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-SCCCTTCCEEEEET
T ss_pred EEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHC-CCCCCCCCEEEECC
T ss_conf 99934899999999999997334786799997888878999985069989998748999999728-85633277688751
Q ss_pred CCHHCCCCHHHHHHHHHHHC--CCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECHHHHHH
Q ss_conf 74000389099999999979--9996068875024133999999855998387248998888873178999801012217
Q 006500 280 ADRLLELGFSAEIHELVRLC--PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (643)
Q Consensus 280 ah~l~~~~~~~~~~~i~~~~--~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (643)
||++++++|...+..++..+ +..+|+++||||+++.+..++..++.++..+...........+.+.+..+. ...+
T Consensus 212 ah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~k 288 (434)
T 2db3_A 212 ADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN---KYAK 288 (434)
T ss_dssp HHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECC---GGGH
T ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEC---CHHH
T ss_conf 7666306719999999972578988569999556898999999986469889995356666665336999937---1777
Q ss_pred HHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 99999984114996399992778889999999842699367715899999999999976329910999525211147889
Q 006500 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (643)
Q Consensus 358 ~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLiaT~~~~~GiDi~ 437 (643)
...+..++..... ++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 289 ~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 289 RSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCCCCC
T ss_conf 9999999985799-879999471899999999986799879984999999999999999859993999820645778832
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECC-CCHHHHHHHHHHH
Q ss_conf 855899539999943789987321227991179999615-7499999999993
Q 006500 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKRA 489 (643)
Q Consensus 438 ~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~-~d~~~~~~i~~~~ 489 (643)
++++||+|++|+++..|+||+||+||.|+.|.+++|+++ .+...+..+.+..
T Consensus 368 ~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l 420 (434)
T 2db3_A 368 NIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 420 (434)
T ss_dssp TCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 48989997899998899998160655899877999980642199999999999
No 2
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=441.74 Aligned_cols=364 Identities=29% Similarity=0.467 Sum_probs=311.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6688656899988999999879999978899999998359--98689857994468993775999984299999981899
Q 006500 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (643)
Q Consensus 123 ~~~~~~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g--~d~li~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vL 200 (643)
...+|.+++|++.+++++..+||..|+++|.++++.++.+ +++++++|||||||++|++|+++.+.... .++++|
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~---~~~~~l 166 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQCL 166 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS---CSCCEE
T ss_pred CCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC---CCCCEE
T ss_conf 75997776999999999997599999989999999997489985899857998351999999999876347---887479
Q ss_pred EECCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEEEC
Q ss_conf 9858289999999999997513-894699985698747899974489969998924689988426865788811999818
Q 006500 201 ILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (643)
Q Consensus 201 il~Ptr~La~Q~~~~~~~l~~~-~~~~v~~~~g~~~~~~~~~~l~~~~~Iii~Tp~~L~~~l~~~~~~~l~~i~~iViDE 279 (643)
||+|+++|+.|+++.+..+..+ .++.+....++...... ....++|+|+||++|++++.+...+.+.++++||+||
T Consensus 167 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 243 (479)
T 3fmp_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (479)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECC
T ss_pred EEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---CCCCCCEEEECCHHHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 9938399999999999999722887459999688640211---1478998997863899999726996723398999977
Q ss_pred CCHHCC-CCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECHHHHHHH
Q ss_conf 740003-8909999999997999960688750241339999998559983872489988888731789998010122179
Q 006500 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (643)
Q Consensus 280 ah~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (643)
||+++. ++|...+..+...++..+|++++|||++..+..+....+..|..+...........+.+.+..+.. ...+.
T Consensus 244 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~ 321 (479)
T 3fmp_B 244 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS--RDEKF 321 (479)
T ss_dssp HHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECC--HHHHH
T ss_conf 7888441896789999996388546499994878879999999976998699626645676776699999477--78899
Q ss_pred HHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
Q ss_conf 99999841149963999927788899999998426993677158999999999999763299109995252111478898
Q 006500 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (643)
Q Consensus 359 ~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLiaT~~~~~GiDi~~ 438 (643)
..+..++.....+++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 322 ~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~ 401 (479)
T 3fmp_B 322 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf 99999985256786699968688999999999758951899608899999999999997699959998442116776223
Q ss_pred CCEEEECCCCC------CHHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHCCCCC
Q ss_conf 55899539999------94378998732122799117999961574-9999999999368321
Q 006500 439 VQTVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLK 494 (643)
Q Consensus 439 v~~VI~~~~p~------s~~~y~Qr~GRagR~g~~g~~~~l~~~~d-~~~~~~i~~~~~~~~~ 494 (643)
+++||+|++|+ +...|+||+||+||.|+.|.+++|+++.+ ..+++.+.+.....+.
T Consensus 402 v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~ 464 (479)
T 3fmp_B 402 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIE 464 (479)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCE
T ss_conf 998999669998766778999998724335699984399997473059999999998588924
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=1.00 E-value=1 Score=441.45 Aligned_cols=369 Identities=31% Similarity=0.525 Sum_probs=329.6
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 68865689998899999987999997889999999835998689857994468993775999984299999981899985
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 124 ~~~~~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~li~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
..+|.++++++.+++++..+||..|+++|.++++.++.|++++++++||+|||++|++++++.+... ..++++||++
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---~~~~~~lil~ 112 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---VRETQALILA 112 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT---SCSCCEEEEC
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHC---CCCCEEEEEC
T ss_conf 7997666999999999997699999889999989984799779988899983399999999998625---6783389973
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEEECCCHH
Q ss_conf 82899999999999975138946999856987478999744899699989246899884268657888119998187400
Q 006500 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Iii~Tp~~L~~~l~~~~~~~l~~i~~iViDEah~l 283 (643)
|+++|+.|+++.+..+....++.+..++|+.........+..+++|+|+||++|.+.+... .+.+..++++|+||||++
T Consensus 113 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~-~~~~~~~~~vViDEah~~ 191 (410)
T 2j0s_A 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEM 191 (410)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCEEECCHHHHHHHHHHC-CCCHHHEEEEEECCHHHH
T ss_conf 8489999999999998454773799998997879999985169988985989999999838-935756059997568898
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECHHHHHHHHHHHH
Q ss_conf 03890999999999799996068875024133999999855998387248998888873178999801012217999999
Q 006500 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (643)
Q Consensus 284 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (643)
++++|...+..++..++...|++++|||+++.+..+...++..|..+...........+.+.+..+.. ...+...+..
T Consensus 192 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l~~ 269 (410)
T 2j0s_A 192 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVER--EEWKFDTLCD 269 (410)
T ss_dssp TSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESS--TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECC--HHHHHHHHHH
T ss_conf 76345999999998486476699997579999999999875898899956865567885599999382--7769999999
Q ss_pred HHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 84114996399992778889999999842699367715899999999999976329910999525211147889855899
Q 006500 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (643)
Q Consensus 364 ~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLiaT~~~~~GiDi~~v~~VI 443 (643)
++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||+|+++++|+|+|++++||
T Consensus 270 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi 349 (410)
T 2j0s_A 270 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349 (410)
T ss_dssp HHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE
T ss_pred HHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEE
T ss_conf 99735778479998578789999999986799469822789988999999998779998999897654748844599899
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCH
Q ss_conf 5399999437899873212279911799996157499999999993683210000
Q 006500 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498 (643)
Q Consensus 444 ~~~~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~~ 498 (643)
+|++|+++..|+||+||+||.|+.|.+++|+.+.+...++.+.+..+..+....+
T Consensus 350 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 350 NYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp ESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred EECCCCCHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCEECCC
T ss_conf 9799999899998646456799965999986578999999999986799601365
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=439.71 Aligned_cols=366 Identities=29% Similarity=0.482 Sum_probs=304.1
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCHH
Q ss_conf 999889999998799999788999999983--59986898579944689937759999842999-999818999858289
Q 006500 131 NLSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTPTRE 207 (643)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l--~g~d~li~~~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vLil~Ptr~ 207 (643)
.|++.+++++..+||..|+++|.++|+.++ .|+++++.+|||+|||++|++|+++.+..... ...++++|||+||++
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHH
T ss_conf 99999999999779999999999999999805998399983798679999999999999841335668976999825199
Q ss_pred HHHHHHHHHHHHHH----CCCCEEEEEECCCCHHHHHHHHC-CCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEEECCCH
Q ss_conf 99999999999751----38946999856987478999744-89969998924689988426865788811999818740
Q 006500 208 LAVQVHSMIEKIAQ----FTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (643)
Q Consensus 208 La~Q~~~~~~~l~~----~~~~~v~~~~g~~~~~~~~~~l~-~~~~Iii~Tp~~L~~~l~~~~~~~l~~i~~iViDEah~ 282 (643)
|+.|+++.+..+.. ...+.+..++|+.........+. ..++|+|+||++|.+++.......+..+.+|||||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECHHH
T ss_conf 99999999999985434666637999989906799999984599999998989999999845543413388999988377
Q ss_pred HCCCCHHHHHHHHHHHCC-------CCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCC----CCCCCCEEEEEEEEC
Q ss_conf 003890999999999799-------996068875024133999999855998387248998----888873178999801
Q 006500 283 LLELGFSAEIHELVRLCP-------KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA----KRPSTLTEEVVRIRR 351 (643)
Q Consensus 283 l~~~~~~~~~~~i~~~~~-------~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~ 351 (643)
+++|+|...+..++..++ ..+|+++||||+++.+..++...+..+..+...... .....+.+.......
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEECC
T ss_conf 64478799999999874553114656745999935688689999999769982599960576665540343159999442
Q ss_pred HHHH--HHHHHHHHHHH-CCCCCEEEEEECCHHHHHHHHHHHHHC---CCCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 0122--17999999841-149963999927788899999998426---99367715899999999999976329910999
Q 006500 352 MREV--NQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425 (643)
Q Consensus 352 ~~~~--~~~~~l~~~~~-~~~~~~~LIF~~s~~~~~~l~~~L~~~---~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLi 425 (643)
.... .....+...+. ...+.++||||+++..++.++..|... ++.+..+||++++.+|..+++.|+.|+..|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 26559999999999986137898389988928999999999987524797279841889999999999986358871999
Q ss_pred ECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 52521114788985589953999994378998732122799117999961574999999999936832100
Q 006500 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (643)
Q Consensus 426 aT~~~~~GiDi~~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~ 496 (643)
||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+..+++.+.+..+..+...
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 417 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 417 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred ECCHHHCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCC
T ss_conf 81445458873568789981899987776532264455899732999972418999999999858975535
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=438.66 Aligned_cols=365 Identities=35% Similarity=0.552 Sum_probs=320.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCC--------
Q ss_conf 766688656899988999999879999978899999998359986898579944689937759999842999--------
Q 006500 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-------- 192 (643)
Q Consensus 121 ~~~~~~~~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~li~~~TGsGKT~~~~l~~l~~l~~~~~-------- 192 (643)
+.+..+|.++++++.+.+++..+||..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+.....
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCC
T ss_conf 96448974489999999999977999998899999998726998899907987798999999999997446410000011
Q ss_pred -------CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCC
Q ss_conf -------9998189998582899999999999975138946999856987478999744899699989246899884268
Q 006500 193 -------RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM 265 (643)
Q Consensus 193 -------~~~~~~vLil~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Iii~Tp~~L~~~l~~~~ 265 (643)
...++++||++||++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|..++...
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~- 169 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG- 169 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-
T ss_pred CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC-
T ss_conf 1233444457964899889299999999999998275880499998899879999986079999998969999999749-
Q ss_pred CCCCCCEEEEEEECCCHHCCCCHHHHHHHHHHH--CCC--CCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 657888119998187400038909999999997--999--9606887502413399999985599838724899888887
Q 006500 266 SVDLDDLAVLILDEADRLLELGFSAEIHELVRL--CPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST 341 (643)
Q Consensus 266 ~~~l~~i~~iViDEah~l~~~~~~~~~~~i~~~--~~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 341 (643)
.+.+..+++||+||||++++++|...+..++.. .+. ..|++++|||+++.+..+...++..+..+...........
T Consensus 170 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN 249 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSS
T ss_pred CCCHHHCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 93763595999978367536586999999997354897677489999985799999999997589789980787777557
Q ss_pred CEEEEEEEECHHHHHHHHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 317899980101221799999984114-9963999927788899999998426993677158999999999999763299
Q 006500 342 LTEEVVRIRRMREVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (643)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~ 420 (643)
+.+.+..+.. ..+...+..++... .++++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+
T Consensus 250 i~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 250 ITQKVVWVEE---SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp EEEEEEECCG---GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CEEEEEEECC---HHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 4278999260---7689999999985589971999979889999999999977997467108999899999999997699
Q ss_pred CEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 109995252111478898558995399999437899873212279911799996157499999999993
Q 006500 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (643)
Q Consensus 421 ~~vLiaT~~~~~GiDi~~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~~~~i~~~~ 489 (643)
.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.+++|+++.+...+..+.+..
T Consensus 327 ~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 395 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHH
T ss_pred CCEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 979998974434787346898999769999899998628431489972599987624389999999999
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=1.00 E-value=1 Score=434.38 Aligned_cols=366 Identities=29% Similarity=0.484 Sum_probs=302.5
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC-CCCEEEEEECCCHH
Q ss_conf 999889999998799999788999999983--599868985799446899377599998429999-99818999858289
Q 006500 131 NLSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLILTPTRE 207 (643)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l--~g~d~li~~~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~vLil~Ptr~ 207 (643)
.|++.+++++..+||..|+++|.++|+.++ .++++++++|||||||++|++|+++.+...... ..++++|||+||++
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHH
T ss_conf 88999999999779999999999999999667997299987899974299999999998742346667704999828499
Q ss_pred HHHHHHHHHHHHHHC----CCCEEEEEECCCCHHHHHHHH-CCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEEECCCH
Q ss_conf 999999999997513----894699985698747899974-489969998924689988426865788811999818740
Q 006500 208 LAVQVHSMIEKIAQF----TDIRCCLVVGGLSTKMQETAL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (643)
Q Consensus 208 La~Q~~~~~~~l~~~----~~~~v~~~~g~~~~~~~~~~l-~~~~~Iii~Tp~~L~~~l~~~~~~~l~~i~~iViDEah~ 282 (643)
|+.|+++.+..+... ....+..++|+.........+ ...++|+|+||++|.+++.+.....+..+++||+||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCEEEEEECHHH
T ss_conf 99999999999974235667604999989907799999974689998998929999999834411125510999837787
Q ss_pred HCCCCHHHHHHHHHHHCC-------CCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCC----CCCCCCEEEEEEEEC
Q ss_conf 003890999999999799-------996068875024133999999855998387248998----888873178999801
Q 006500 283 LLELGFSAEIHELVRLCP-------KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA----KRPSTLTEEVVRIRR 351 (643)
Q Consensus 283 l~~~~~~~~~~~i~~~~~-------~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~ 351 (643)
+++++|...+..++..++ ..+|+++||||+++.+..++...+..+..+...... .....+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEECCH
T ss_conf 75055099999999861110356766755999981688789999998638876178741577775521037548998722
Q ss_pred HHHH--HHHHHHHHHH-HCCCCCEEEEEECCHHHHHHHHHHHHHC---CCCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 0122--1799999984-1149963999927788899999998426---99367715899999999999976329910999
Q 006500 352 MREV--NQEAVLLSLC-SKTFTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425 (643)
Q Consensus 352 ~~~~--~~~~~l~~~~-~~~~~~~~LIF~~s~~~~~~l~~~L~~~---~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLi 425 (643)
.... .....+...+ ....+.++||||+++..++.++..|... ++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 67669999999999986137887289994817999999999987424796089825889999999999998668998899
Q ss_pred ECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 52521114788985589953999994378998732122799117999961574999999999936832100
Q 006500 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (643)
Q Consensus 426 aT~~~~~GiDi~~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~ 496 (643)
||+++++|||+|++++||+|++|.++..|+||+||+||.|+.|.+++|+.+.+..+++.+.+..+..+...
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 468 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 468 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred ECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCC
T ss_conf 83666468984267779997999964246464272356999853999975048899999999748886634
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=430.31 Aligned_cols=368 Identities=30% Similarity=0.515 Sum_probs=330.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 68865689998899999987999997889999999835998689857994468993775999984299999981899985
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 124 ~~~~~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~li~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
..+|.++++++.+++.+..+||..|+++|.++++.++.|+++++.+|||+|||++|.+++++.+.... .+.++||++
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil~ 115 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL---KATQALVLA 115 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS---CSCCEEEEC
T ss_pred HCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC---CCEEEEEEE
T ss_conf 14774479999999999976999999899998679857997899878998505999999999986057---861699993
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHC-CCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEEECCCH
Q ss_conf 82899999999999975138946999856987478999744-89969998924689988426865788811999818740
Q 006500 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~-~~~~Iii~Tp~~L~~~l~~~~~~~l~~i~~iViDEah~ 282 (643)
|+++|+.|+++.+..+....+..+..++|+.........+. ..++|+|+||++|.+.+... .+.+..+++||+||||+
T Consensus 116 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 116 PTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR-YLSPKYIKMFVLDEADE 194 (414)
T ss_dssp SSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT-SSCSTTCCEEEECSHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCC-CCCCCCCCEEEEECHHH
T ss_conf 75999999999999984515833999978965578999973699999998989999999759-95630382999989888
Q ss_pred HCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECHHHHHHHHHHH
Q ss_conf 00389099999999979999606887502413399999985599838724899888887317899980101221799999
Q 006500 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (643)
Q Consensus 283 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (643)
+.+++|...+..++..++...|++++|||+++.+..+...++..+..+...........+.+.+..... ...+...+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ 272 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVER--EEWKLDTLC 272 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSS--STTHHHHHH
T ss_pred HHCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECH--HHHHHHHHH
T ss_conf 620373999999998388877699999836878999999875897899924776688980599999676--875899999
Q ss_pred HHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEE
Q ss_conf 98411499639999277888999999984269936771589999999999997632991099952521114788985589
Q 006500 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (643)
Q Consensus 363 ~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLiaT~~~~~GiDi~~v~~V 442 (643)
.++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++|
T Consensus 273 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 273 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEE
T ss_conf 99984799828999687899999999998669708973477999999999999975999399988831269785678889
Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 9539999943789987321227991179999615749999999999368321000
Q 006500 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497 (643)
Q Consensus 443 I~~~~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~ 497 (643)
|+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.....+....
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMP 407 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECC
T ss_pred EEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9967999888823415725689897669999727789999999999757743169
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=1.00 E-value=1 Score=422.97 Aligned_cols=367 Identities=32% Similarity=0.528 Sum_probs=323.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 66886568999889999998799999788999999983599868985799446899377599998429999998189998
Q 006500 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (643)
Q Consensus 123 ~~~~~~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~li~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil 202 (643)
...+|.+++|++.+.+++..+||..|+++|.++++.++.|+++++.+|||+|||++|+++++..+... ..+.++||+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~---~~~~~~lil 95 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK---LNKIQALIM 95 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT---SCSCCEEEE
T ss_pred CCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHC---CCCCCEEEE
T ss_conf 56882214999999999998799999899999988882699789988999579999999999987404---589648998
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEEECCCH
Q ss_conf 58289999999999997513894699985698747899974489969998924689988426865788811999818740
Q 006500 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (643)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Iii~Tp~~L~~~l~~~~~~~l~~i~~iViDEah~ 282 (643)
+|+++|+.|+++.+..+....++.+..++|+.........+...++|+|+||++|...+... ...+.++.++|+||||+
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~ 174 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK-VADLSDCSLFIMDEADK 174 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEESHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHC-CCCCCCCCEEEEECCHH
T ss_conf 69999999999999998530691499996896658899973689989997669999999838-96516578899938358
Q ss_pred HCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECHHHHHHHHHHH
Q ss_conf 00389099999999979999606887502413399999985599838724899888887317899980101221799999
Q 006500 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (643)
Q Consensus 283 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (643)
+.+.+|...+..++..++...|++++|||++..+...+...+..|..+...... ....+.+.+..+. ...+...+.
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~k~~~l~ 250 (400)
T 1s2m_A 175 MLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEEL-TLKGITQYYAFVE---ERQKLHCLN 250 (400)
T ss_dssp HSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSC-BCTTEEEEEEECC---GGGHHHHHH
T ss_pred HHHHCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCC-CCCCCEEEEEEEC---HHHHHHHHH
T ss_conf 662066999999997489673699999568878999999975898378832434-4577506899835---231899999
Q ss_pred HHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEE
Q ss_conf 98411499639999277888999999984269936771589999999999997632991099952521114788985589
Q 006500 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (643)
Q Consensus 363 ~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLiaT~~~~~GiDi~~v~~V 442 (643)
.++.....+++||||+++..++.++..|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 251 ~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 251 TLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 330 (400)
T ss_dssp HHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEE
T ss_pred HHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEE
T ss_conf 99864377857999924899999999998669976985177998999999999865998099986731147886678889
Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 9539999943789987321227991179999615749999999999368321000
Q 006500 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497 (643)
Q Consensus 443 I~~~~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~ 497 (643)
|+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+..+..+....
T Consensus 331 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 385 (400)
T 1s2m_A 331 INFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIP 385 (400)
T ss_dssp EESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECC
T ss_pred EEECCCCCHHHHHHHCCHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 9958999988978745030379898469998654069999999998588765465
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=1.00 E-value=1 Score=421.92 Aligned_cols=364 Identities=30% Similarity=0.516 Sum_probs=315.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 68865689998899999987999997889999999835998689857994468993775999984299999981899985
Q 006500 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (643)
Q Consensus 124 ~~~~~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~d~li~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLil~ 203 (643)
..+|.++++++.+.+++..+||..|+++|.++++.++.|+++++.+|||+|||++|.+++++.+... ..++++||++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~---~~~~~~lil~ 96 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---VKAPQALMLA 96 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT---CCSCCEEEEC
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCC---CCCCCEEEEC
T ss_conf 3884326999999999997599999889999999983799789988999739999999999986435---7898789984
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEEECCCHH
Q ss_conf 82899999999999975138946999856987478999744899699989246899884268657888119998187400
Q 006500 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (643)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~~Iii~Tp~~L~~~l~~~~~~~l~~i~~iViDEah~l 283 (643)
|+++|+.|+++.+..+....++.+..++|+.........+. .++|+|+||++|...+... .+.+..++++|+||||++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~-~~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEM 174 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCC-CCCEEEECHHHHHHHHHHC-CCCHHHCCEEEEECHHHH
T ss_conf 98999999999999985537814999967886688896467-9999997879999999818-815613759999786786
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECHHHHHHHHHHHH
Q ss_conf 03890999999999799996068875024133999999855998387248998888873178999801012217999999
Q 006500 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (643)
Q Consensus 284 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (643)
.++++...+..++..++...|++++|||+++.+..+....+..|..+...........+.+.+..+.. ...+...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEE--EEYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred HCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEECCC--HHHHHHHHHH
T ss_conf 57795899999998488776499999756889999999863788399956765467772499998581--3657999999
Q ss_pred HHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 84114996399992778889999999842699367715899999999999976329910999525211147889855899
Q 006500 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (643)
Q Consensus 364 ~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLiaT~~~~~GiDi~~v~~VI 443 (643)
++.....+++||||+++..++.++..|...++.+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 253 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 253 LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEE
T ss_conf 99528788479998788999999999997697189840789989999999999779985999888143288820289899
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 539999943789987321227991179999615749999999999368321
Q 006500 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (643)
Q Consensus 444 ~~~~p~s~~~y~Qr~GRagR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~ 494 (643)
+|++|+++..|+||+||+||.|++|.|++|+++.+...+..+.+..+..+.
T Consensus 333 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (394)
T 1fuu_A 333 NYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 383 (394)
T ss_dssp ---------------------------------------------------
T ss_pred EECCCCCHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCC
T ss_conf 967999989988871724579898559999754688999999998577630
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=1.00 E-value=1 Score=418.74 Aligned_cols=368 Identities=29% Similarity=0.461 Sum_probs=318.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 66688656899988999999879999978899999998359--9868985799446899377599998429999998189
Q 006500 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199 (643)
Q Consensus 122 ~~~~~~~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g--~d~li~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~v 199 (643)
....+|.++++++.+++++..+||..|+++|.++++.++.+ +++++++|||+|||++|++++++.+.... .++++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~---~~~~~ 98 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQC 98 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS---CSCCE
T ss_pred CCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC---CCCCE
T ss_conf 566887667989999999998699999989999999996699970899899995598999999999865247---99888
Q ss_pred EEECCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf 99858289999999999997513-89469998569874789997448996999892468998842686578881199981
Q 006500 200 LILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (643)
Q Consensus 200 Lil~Ptr~La~Q~~~~~~~l~~~-~~~~v~~~~g~~~~~~~~~~l~~~~~Iii~Tp~~L~~~l~~~~~~~l~~i~~iViD 278 (643)
||++|+++|+.|+++.+..+... .+..+....++...... ....++|+|+||++|..++.+...+.+.+++++|+|
T Consensus 99 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH---HCCCCCEEEECCHHHHHHHHHCCCCCHHHCCEEEEE
T ss_conf 99899899999999999999733666338986157411033---347898899981189999974699676348199996
Q ss_pred CCCHHCC-CCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECHHHHHH
Q ss_conf 8740003-890999999999799996068875024133999999855998387248998888873178999801012217
Q 006500 279 EADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (643)
Q Consensus 279 Eah~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (643)
|||++.. +++...+..+...++...|++++|||+++.+..+....+..+..+...........+.+.+.... ....+
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 253 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS--SRDEK 253 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECS--SHHHH
T ss_pred CHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEECC--CHHHH
T ss_conf 8788854489578999998538877459999820588999999986689728860564445567539999837--75878
Q ss_pred HHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 99999984114996399992778889999999842699367715899999999999976329910999525211147889
Q 006500 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (643)
Q Consensus 358 ~~~l~~~~~~~~~~~~LIF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~F~~g~~~vLiaT~~~~~GiDi~ 437 (643)
...+..++....++++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 254 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 333 (412)
T 3fht_A 254 FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 333 (412)
T ss_dssp HHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf 99999998616889889995978999999999986797389963999999999999999779994999858323688756
Q ss_pred CCCEEEECCCCC------CHHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHCCCCCCCC
Q ss_conf 855899539999------94378998732122799117999961574-9999999999368321000
Q 006500 438 GVQTVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKSRI 497 (643)
Q Consensus 438 ~v~~VI~~~~p~------s~~~y~Qr~GRagR~g~~g~~~~l~~~~d-~~~~~~i~~~~~~~~~~~~ 497 (643)
++++||+|++|+ +...|+||+||+||.|+.|.+++++++.+ ...+..+.+.....+....
T Consensus 334 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 334 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp TEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CCCEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7898999799998777754212241457354798984699997580369999999999778632279
Done!