BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006501
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 212 bits (540), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 106/172 (61%), Positives = 121/172 (70%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF DV I G+ V +IV+ELFAD+VPKTAENFRALCTGEKGIG +TGKPLH+KG FH
Sbjct: 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFH 74
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RIIK FMIQGGDFS NGTGGESIYG KF DENF H+ G+LSMAN+G+NTNGSQFFI
Sbjct: 75 RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFI 134
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFSE 177
T HLD + + K +E V KPA+ I +CGE E
Sbjct: 135 TTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKE 186
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/167 (59%), Positives = 119/167 (71%), Gaps = 1/167 (0%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
VF D++I G +IV+EL+ DVVPKTA NFRALCTGE GIGKS GKPLH+KG+ FHRII
Sbjct: 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKS-GKPLHFKGSKFHRII 64
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
FMIQGGDF++GNGTGGESIYG KF DENFK H GPG+LSMAN+G NTNGSQFF+
Sbjct: 65 PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 175
+ LD L++VK +E G+ GKP + I DCG+
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 121/177 (68%), Gaps = 4/177 (2%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+SID +IV+EL+AD VPKTAENFRALCTGEKG G+S GKPLHYK ++FH
Sbjct: 7 NPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRS-GKPLHYKSSVFH 65
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLD---HNGPGILSMANSGANTNGSQ 122
R+I FMIQGGDF++GNGTGGESIYG F DE+F H G G LSMAN+G NTNGSQ
Sbjct: 66 RVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQ 125
Query: 123 FFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFSESK 179
FFI LD L++VKK+E++G+ GK + + DCGE + K
Sbjct: 126 FFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEVAADK 182
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 22 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 73
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 74 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 133
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 134 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 182
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 54
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 192 bits (487), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 53
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 54 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 113
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 114 CTAKTKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 162
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 192 bits (487), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 54
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 192 bits (487), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 53
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 54 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 113
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 114 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 162
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 11 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 62
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 63 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 122
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 123 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 171
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 96/169 (56%), Positives = 119/169 (70%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 54
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 115 CTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 54
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 191 bits (486), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Query: 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMF 64
+ P F D++I+ P ++V ELF+DV PKT ENFR LCTGEKG GKST KPLHYK +F
Sbjct: 25 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLF 84
Query: 65 HRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFF 124
HR++K FM+QGGDFS+GNG GGESIYGG F DE+F + HN +LSMAN G +TNGSQFF
Sbjct: 85 HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFF 144
Query: 125 ITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEF 175
IT + HLD +V++IE T KP V+I+ CGE
Sbjct: 145 ITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 119/170 (70%), Gaps = 8/170 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 7 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 58
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 59 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 118
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 175
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 119 CTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 168
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 96/169 (56%), Positives = 119/169 (70%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 54
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 115 CTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 54
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGIL+MAN+G NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFI 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Query: 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMF 64
+ P F D++I+ P ++V ELF+DV PKT ENFR LCTGEKG GKST KPLHYK +F
Sbjct: 8 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLF 67
Query: 65 HRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFF 124
HR++K FM+QGGDFS+GNG GGESIYGG F DE+F + HN +LSMAN G +TNGSQFF
Sbjct: 68 HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFF 127
Query: 125 ITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEF 175
IT + HLD +V++IE T KP V+I+ CGE
Sbjct: 128 ITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 54
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
+II GFM QGGDF++ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 55 KIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 117/168 (69%), Gaps = 1/168 (0%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP+V+ D+SI P +I +ELFAD VP TAENFRALCTGEKG+G+S GKPL Y G+ FH
Sbjct: 19 NPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQS-GKPLCYTGSFFH 77
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII FMIQGGDF++G+GTGGESIYG KF DENF H+ P +LSMAN+G NTNGSQFFI
Sbjct: 78 RIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFI 137
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCG 173
T LD + +VK IE+ G+ +GKP + V I G
Sbjct: 138 TTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Query: 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMF 64
+ P F D++I+ P ++V ELF+DV PKT ENFR LCTGEKG GKST KPLHYK +F
Sbjct: 8 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLF 67
Query: 65 HRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFF 124
HR++K FM+QGGDFS+GNG GGESIYGG F DE+F + HN +LSMAN G +TNGSQFF
Sbjct: 68 HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFF 127
Query: 125 ITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEF 175
IT + HLD +V++IE T KP V+I+ CGE
Sbjct: 128 ITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 117/171 (68%), Gaps = 8/171 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NPLV+LDV +G P+ ++V+EL ADVVPKTAENFRALCTGEKG G YKG+ FH
Sbjct: 4 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTFH 55
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
R+I FM Q GDF+ NGTGG+SIYG +F DENF L H GPG+LSMAN+G NTNGSQFFI
Sbjct: 56 RVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFI 115
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFS 176
+ LD +++VKKIE G+ G+ ++ + I DCG+ S
Sbjct: 116 CTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 166
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 117/169 (69%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 54
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGG+F+ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 117/171 (68%), Gaps = 8/171 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NPLV+LDV +G P+ ++V+EL ADVVPKTAENFRALCTGEKG G YKG+ FH
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTFH 54
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
R+I FM Q GDF+ NGTGG+SIYG +F DENF L H GPG+LSMAN+G NTNGSQFFI
Sbjct: 55 RVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFI 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFS 176
+ LD +++VKKIE G+ G+ ++ + I DCG+ S
Sbjct: 115 CTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 117/169 (69%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 54
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGG+F+ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 55 RIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +E+ G+ +GK ++ + I DCG+
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 117/171 (68%), Gaps = 8/171 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NPLV+LDV +G P+ ++V+EL ADVVPKTAENFRALCTGEKG G YKG+ FH
Sbjct: 2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTFH 53
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
R+I FM Q GDF+ NGTGG+SIYG +F DENF L H GPG+LSMAN+G NTNGSQFFI
Sbjct: 54 RVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFI 113
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFS 176
+ LD +++VKKIE G+ G+ ++ + I DCG+ S
Sbjct: 114 CTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 117/171 (68%), Gaps = 8/171 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NPLV+LDV +G P+ ++V+EL ADVVPKTAENFRALCTGEKG G YKG+ FH
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTFH 54
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
R+I FM Q GDF+ NGTGG+SIYG +F DENF L H GPG+LSMAN+G NTNGSQFFI
Sbjct: 55 RVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFI 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEFS 176
+ LD +++VKKIE G+ G+ ++ + I DCG+ S
Sbjct: 115 CTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 117/169 (69%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 53
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GFM QGGDF+ NGTGG+SIYG KF DENF L H GPGILSMAN+G NTNGSQFFI
Sbjct: 54 RIIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 113
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD +NIV+ +++ G+ +GK ++ + I DCG+
Sbjct: 114 CTAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIADCGQ 162
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/176 (53%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Query: 1 MSEKKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYK 60
MS+K VFLDV+IDG+ +IV+EL+ D+ P+T NF LCTG G GK +GKPLHYK
Sbjct: 1 MSKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYK 60
Query: 61 GTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNG 120
G+ FHR+IK FMIQGGDF+KG+GTGGESIYGG F DE F + H+ P ++SMAN G NTNG
Sbjct: 61 GSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNG 120
Query: 121 SQFFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEF 175
SQFFIT HL+ +V KIE + T +P V I++CGE
Sbjct: 121 SQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 115/174 (66%), Gaps = 4/174 (2%)
Query: 2 SEKKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKG 61
S NP+VF DVSI G V ++ IELFADVVPKTAENFR CTGE + G P+ YKG
Sbjct: 6 SSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEF---RKDGVPIGYKG 62
Query: 62 TMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGS 121
+ FHR+IK FMIQGGDF G+GTG SIY G F DENFKL H+ PG+LSMANSG +TNG
Sbjct: 63 STFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGC 122
Query: 122 QFFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTG-DGKPAQPVKIIDCGE 174
QFFIT + LD L +++KIE V TG + KP PV I CGE
Sbjct: 123 QFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/169 (55%), Positives = 114/169 (67%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP VF D+++DG+P+ ++ ELFAD VPKTAENFRAL TGEKG G YKG+ FH
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFH 53
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
RII GF QGGDF++ NGTGG+SIYG KF DENF L H GPGILS AN+G NTNGSQFFI
Sbjct: 54 RIIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFI 113
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
+ LD NIV+ E+ G+ +GK ++ + I DCG+
Sbjct: 114 CTAKTEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIADCGQ 162
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 181 bits (460), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 92/165 (55%), Positives = 110/165 (66%), Gaps = 8/165 (4%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
VF D++ +G P+ I +LF DVVPKTA NFRALCTGEKG G Y G+ FHR+I
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG--------YAGSHFHRVI 55
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
FM+QGGDF+ GNGTGG+SIYG KF DENF+L HN PG+LSMAN+G NTNGSQFFIT
Sbjct: 56 PDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCG 173
LD +N+VK IE G+G GKP ++I CG
Sbjct: 116 VTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 117/172 (68%), Gaps = 1/172 (0%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
+P D+ I+ +PV +I+ +LF+D+ PKT +NF LC+GEKG+GK+TGK L YKG+ FH
Sbjct: 19 SPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFH 78
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
R++K FMIQGGDFS+GNG GGESIYGG F DENF L H+ +LSMAN G +TNGSQFFI
Sbjct: 79 RVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFI 138
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEFS 176
T + HLD ++++IE + T +P V++IDCG +
Sbjct: 139 TTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 112/167 (67%), Gaps = 2/167 (1%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
VF D+SID +I+ ELF+D+ P+T ENFRALCTGEK IG S GK LHYK ++FHRII
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFHRII 63
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
FM QGGD + GNG+GGESIYG FTDENF + H+ PG+LSMAN+G NTN SQFFIT
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 175
LD +N+V+++E+ G G + V I DCGE
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 113/172 (65%), Gaps = 8/172 (4%)
Query: 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTM 63
+ NP V++D+ I P +I + L +DVVP TAENFR LCT EKG G +KG+
Sbjct: 9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSS 60
Query: 64 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 123
FHRII FM QGGDF+ NGTGG+SIYG KF DENF L H GPG+LSMANSG NTNGSQF
Sbjct: 61 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 120
Query: 124 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 175
F+T + LD L+++++IE G+ DGKP Q V I DCGE+
Sbjct: 121 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 172
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 113/172 (65%), Gaps = 8/172 (4%)
Query: 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTM 63
+ NP V++D+ I P +I + L +DVVP TAENFR LCT EKG G +KG+
Sbjct: 1 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSS 52
Query: 64 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 123
FHRII FM QGGDF+ NGTGG+SIYG KF DENF L H GPG+LSMANSG NTNGSQF
Sbjct: 53 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 112
Query: 124 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 175
F+T + LD L+++++IE G+ DGKP Q V I DCGE+
Sbjct: 113 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 164
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 112/167 (67%), Gaps = 2/167 (1%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
VF D+SID +I+ ELF+D+ P+T ENFRALCTGEK IG S GK LHYK ++FHRII
Sbjct: 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFHRII 63
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
FM QGGD + GNG+GGESIYG FTDENF + H+ PG+LSMAN+G NTN SQF IT
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 175
LD +N+V+++E+ G G + V I DCGE+
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEW 170
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 114/169 (67%), Gaps = 8/169 (4%)
Query: 6 NPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFH 65
NP+VF DV DG+P+ +I +ELF+++VP+TAENFRALCTGEKG G +K ++FH
Sbjct: 6 NPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG--------FKNSIFH 57
Query: 66 RIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFI 125
R+I F+ QGGD +K +GTGG+SIYG KF DENF + H GPG+LSMAN G NTN SQF I
Sbjct: 58 RVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVI 117
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGE 174
T ++ HLD ++ VKKIE G+ G + + I +CG+
Sbjct: 118 TLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQ 166
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 112/174 (64%), Gaps = 9/174 (5%)
Query: 3 EKKN-PLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKG 61
+K+N P VF D+ I +IV+EL +D+VP+TAENFRALCTGE+G G Y
Sbjct: 6 QKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHN 57
Query: 62 TMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGS 121
FHR+I FM QGGDF KG+GTGG+SIYG KF DENF+L H G G+LSMANSG NTNGS
Sbjct: 58 CCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGS 117
Query: 122 QFFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 175
QFFI + LD N+VKK+E VG+ GK +PV I CGE
Sbjct: 118 QFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 109/167 (65%), Gaps = 8/167 (4%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
V+ DV DG P+ ++V +L+ D+VPKTAENFRALCTGEKG G Y G+ FHR+I
Sbjct: 4 VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG--------YAGSPFHRVI 55
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
FM+QGGDF+ GNGTGG+SIYGGKF DENFK H+ PG+LSMAN+G NTNGSQFFIT
Sbjct: 56 PDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTV 115
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 175
LD +IVKK+E +G+ G + + GE
Sbjct: 116 PCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 109/172 (63%), Gaps = 8/172 (4%)
Query: 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTM 63
+ NP V+ D+ I P +I L +DVVP TAENFR LCT EKG G +KG+
Sbjct: 10 RSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG--------FKGSS 61
Query: 64 FHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQF 123
FHRII F QGGDF+ NGTGG+SIYG KF DENF L H GPG+LS ANSG NTNGSQF
Sbjct: 62 FHRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQF 121
Query: 124 FITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCGEF 175
F+T + LD L+++++IE G+ DGKP Q V I DCGE+
Sbjct: 122 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 173
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 109/165 (66%), Gaps = 8/165 (4%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
VF ++SI+ P +IV +L+ + VPKTA+NFR L TG+ G G YK ++FHR+I
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIFHRVI 56
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
FM+QGGDF++ NGTGG+SIYG KF DENF++ H PG+LSMAN+GANTNGSQFFIT
Sbjct: 57 PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCG 173
LD L+IV+K+E G+ GK +KI DCG
Sbjct: 117 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 161
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 109/165 (66%), Gaps = 8/165 (4%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
VF ++SI+ P +IV +L+ + VPKTA+NFR L TG+ G G YK ++FHR+I
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIFHRVI 57
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
FM+QGGDF++ NGTGG+SIYG KF DENF++ H PG+LSMAN+GANTNGSQFFIT
Sbjct: 58 PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQPVKIIDCG 173
LD L+IV+K+E G+ GK +KI DCG
Sbjct: 118 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 162
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 111/179 (62%), Gaps = 7/179 (3%)
Query: 1 MSEKKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYK 60
++ NP+VF+D+++ + + K ELF ++VPKT+ENFR CTGE K P+ YK
Sbjct: 54 LTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEY---KVNNLPVGYK 110
Query: 61 GTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNG 120
T+FHR+IK FMIQGGDF NG+G SIYG KF DENF + H+ G+LSMANSG NTNG
Sbjct: 111 NTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNG 170
Query: 121 SQFFITFRRQHHLDXXXXXX--XXXXXXLNIVKKIEQVGTG--DGKPAQPVKIIDCGEF 175
QFFIT ++ LD L ++KKIE V KP P+ +++CGE
Sbjct: 171 CQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 107/172 (62%), Gaps = 9/172 (5%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
V+ D+ I + V +++ LF VPKT +NF AL TGEKG G YK + FHR+I
Sbjct: 18 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRVI 69
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
K FMIQGGDF++G+GTGG+SIYG +F DENFKL H GPG +SMAN+G +TNGSQFFIT
Sbjct: 70 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 129
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEFSESK 179
+ LD + +V+K+E T KP + V I DCG+ K
Sbjct: 130 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK 181
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 107/172 (62%), Gaps = 9/172 (5%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
V+ D+ I + V +++ LF VPKT +NF AL TGEKG G YK + FHR+I
Sbjct: 8 VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRVI 59
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
K FMIQGGDF++G+GTGG+SIYG +F DENFKL H GPG +SMAN+G +TNGSQFFIT
Sbjct: 60 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 119
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEFSESK 179
+ LD + +V+K+E T KP + V I DCG+ K
Sbjct: 120 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK 171
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 155 bits (391), Expect = 8e-38, Method: Composition-based stats.
Identities = 85/172 (49%), Positives = 109/172 (63%), Gaps = 9/172 (5%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
V+ D+ I + + ++VI LF VPKT +NF AL TGEKG G YK + FHR+I
Sbjct: 15 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRVI 66
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
K FMIQGGDF++G+GTGG+SIYG +F DENFKL H GPG +SMAN+G +TNGSQFFIT
Sbjct: 67 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEFSESK 179
+ LD + +V+K+E T G KP + V I DCG+ K
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEK 178
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 154 bits (390), Expect = 1e-37, Method: Composition-based stats.
Identities = 85/172 (49%), Positives = 109/172 (63%), Gaps = 9/172 (5%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
V+ D+ I + + ++VI LF VPKT +NF AL TGEKG G YK + FHR+I
Sbjct: 15 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRVI 66
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
K FMIQGGDF++G+GTGG+SIYG +F DENFKL H GPG +SMAN+G +TNGSQFFIT
Sbjct: 67 KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKIIDCGEFSESK 179
+ LD + +V+K+E T G KP + V I DCG+ K
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEK 178
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 110/175 (62%), Gaps = 10/175 (5%)
Query: 1 MSEKKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYK 60
M+++ + V+ DV + + + +IV++L D+VPKTA+NFR LC KG G YK
Sbjct: 22 MAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YK 73
Query: 61 GTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNG 120
G+ FHRII GFM+QGGD++ NGTGG SIYG KF DENF+L H GILSMAN GA+TNG
Sbjct: 74 GSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNG 133
Query: 121 SQFFITFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVG--TGDGKPAQPVKIIDCG 173
SQFFIT + LD +++V KI + G +G K ++I DCG
Sbjct: 134 SQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 102/167 (61%), Gaps = 9/167 (5%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
VF DV I V +IVI LF +VVPKT ENF AL TGEKG G YKG++FHR+I
Sbjct: 10 VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIFHRVI 61
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
K FMIQGGDF+ +GTGG SIYG F DENFKL H G G +SMAN+G +TNGSQFFIT
Sbjct: 62 KDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 121
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIE-QVGTGDGKPAQPVKIIDCGE 174
+ LD + +V IE Q G +P I++ G+
Sbjct: 122 KPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGK 168
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 100/167 (59%), Gaps = 9/167 (5%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
VF DV I V +IVI LF VVPKT ENF AL TGEKG G YKG+ FHR+I
Sbjct: 18 VFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG--------YKGSKFHRVI 69
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
K FMIQGGD + G+GTGG SIYG F DENFKL H G G +SMAN+G +TNGSQFFIT
Sbjct: 70 KDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 129
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIE-QVGTGDGKPAQPVKIIDCGE 174
+ LD + +V IE Q G +P II+ G+
Sbjct: 130 KPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGK 176
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 102/169 (60%), Gaps = 9/169 (5%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
V+ D+ I G P+ +IVI LF VPKTA NF L KG G Y G+ FHR+I
Sbjct: 9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHRVI 60
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
FMIQGGDF++G+GTGG SIYG KF DENFKL H G G LSMAN+GA+TNGSQFFIT
Sbjct: 61 ADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDG-KPAQPVKIIDCGEFS 176
+ LD +++V+KIEQ G +P Q V I G +
Sbjct: 121 KTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 108/166 (65%), Gaps = 10/166 (6%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
V+ D++I +PV ++VI LF + VPKT ENF+ L +GE G G YKG++FHR+I
Sbjct: 8 VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKGSIFHRVI 59
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
+ FMIQGGDF+ +GTGG+SIYG +F DEN K+ H G +SMAN+G N+NGSQFF+T
Sbjct: 60 RNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTA 118
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTG-DGKPAQPVKIIDCG 173
LD +++VKK+E TG + KP + VKI DCG
Sbjct: 119 PTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 102/168 (60%), Gaps = 10/168 (5%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
V+ DV ID +P+ +I I LF P T ENFR LCTGE G G YK ++FHR+I
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRVI 65
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
+ FMIQGGDF+ +GTGG+SIYG KF DEN + H G LSMAN+G NTNGSQFFIT
Sbjct: 66 QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEF 175
LD +++V +IE+ T +P +PVKI+ GE
Sbjct: 125 PTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 102/168 (60%), Gaps = 10/168 (5%)
Query: 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRII 68
V+ DV ID +P+ +I I LF P T ENFR LCTGE G G YK ++FHR+I
Sbjct: 14 VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRVI 65
Query: 69 KGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFR 128
+ FMIQGGDF+ +GTGG+SIYG KF DEN + H G LSMAN+G NTNGSQFFIT
Sbjct: 66 QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 129 RQHHLDXXXXXXXXXXXXLNIVKKIEQVGTGD-GKPAQPVKIIDCGEF 175
LD +++V +IE+ T +P +PVKI+ GE
Sbjct: 125 PTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 94/160 (58%), Gaps = 12/160 (7%)
Query: 20 VEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFS 79
V +IV LF VPKTA+NFR LC G G Y+ + FHRII FMIQGGDF+
Sbjct: 21 VGRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YRESTFHRIIPNFMIQGGDFT 72
Query: 80 KGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDXXXXX 139
+GNGTGG SIYG KF DENF H+ GILSMAN+G NTNGSQFFIT LD
Sbjct: 73 RGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVV 132
Query: 140 --XXXXXXXLNIVKKIEQVGTGDGKPAQPV--KIIDCGEF 175
++VK+IE +G+ G KI++CGE
Sbjct: 133 FGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 91/164 (55%), Gaps = 16/164 (9%)
Query: 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKG 70
+ V++ D V I IE+F + PKT ENF ALC +Y G +FHR IKG
Sbjct: 1 MSVTLHTD-VGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKG 48
Query: 71 FMIQGGDFSKGNGTGGESIYGGKFTDENFK-LDHNGPGILSMANSGANTNGSQFFITFRR 129
FM+Q GD G G GG SI+G KF DE + L HN G++SMAN+G NTNGSQFFIT+ +
Sbjct: 49 FMVQTGD-PTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK 107
Query: 130 QHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDG--KPAQPVKIID 171
Q HLD L + ++E++ + +P V I D
Sbjct: 108 QPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 151
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 91/164 (55%), Gaps = 16/164 (9%)
Query: 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKG 70
+ V++ D V I IE+F + PKT ENF ALC +Y G +FHR IKG
Sbjct: 7 MSVTLHTD-VGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKG 54
Query: 71 FMIQGGDFSKGNGTGGESIYGGKFTDENFK-LDHNGPGILSMANSGANTNGSQFFITFRR 129
FM+Q GD G G GG SI+G KF DE + L HN G++SMAN+G NTNGSQFFIT+ +
Sbjct: 55 FMVQTGD-PTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK 113
Query: 130 QHHLDXXXXXXXXXXXXLNIVKKIEQVGTGDG--KPAQPVKIID 171
Q HLD L + ++E++ + +P V I D
Sbjct: 114 QPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 157
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 78/148 (52%), Gaps = 14/148 (9%)
Query: 25 IELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGT 84
+EL+ PKT NF LC E G Y T+FHR+I F+IQGGD G G
Sbjct: 52 VELYWYHSPKTCLNFYTLC--EMGF---------YDNTIFHRVIPNFVIQGGD-PTGTGK 99
Query: 85 GGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDXXXXXXXXX 143
GG+SIYG F DE N +L H G GILSM+N+G NTN SQFFIT HLD
Sbjct: 100 GGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARV 159
Query: 144 XXXLNIVKKIEQV-GTGDGKPAQPVKII 170
+ ++ I V T KP +KI+
Sbjct: 160 SKNMTCIENIASVQTTATNKPIFDLKIL 187
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 80/149 (53%), Gaps = 15/149 (10%)
Query: 26 ELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTG 85
+LF PKT ENF C + +Y G FHRIIKGFMIQ GD G G G
Sbjct: 36 KLFPVECPKTVENF---CVHSRN--------GYYNGHTFHRIIKGFMIQTGD-PTGTGMG 83
Query: 86 GESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDXXXXXXXXXX 144
GESI+GG+F DE + L H+ P LSMAN+G+NTNGSQFFIT LD
Sbjct: 84 GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVT 143
Query: 145 XXLNIVKKIEQVGTG--DGKPAQPVKIID 171
+ +V++I V KP + V II+
Sbjct: 144 KGMEVVQRISNVKVNPKTDKPYEDVSIIN 172
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 98.6 bits (244), Expect = 9e-21, Method: Composition-based stats.
Identities = 69/166 (41%), Positives = 88/166 (53%), Gaps = 19/166 (11%)
Query: 7 PLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHR 66
P V+L+ S+ IV+EL+ PKT +NF L +G +Y GT FHR
Sbjct: 12 PNVYLETSMG-----IIVLELYWKHAPKTCKNFAEL--ARRG---------YYNGTKFHR 55
Query: 67 IIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFI 125
IIK FMIQGGD G G GG SIYG +F DE + L G GIL+MAN+G +TNGSQFF+
Sbjct: 56 IIKDFMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKII 170
T LD + +V ++ V T +P VKII
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 69/166 (41%), Positives = 88/166 (53%), Gaps = 19/166 (11%)
Query: 7 PLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHR 66
P V+L+ S+ IV+EL+ PKT +NF L +G +Y GT FHR
Sbjct: 12 PNVYLETSMG-----IIVLELYWKHAPKTCKNFAEL--ARRG---------YYNGTKFHR 55
Query: 67 IIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFI 125
IIK FMIQGGD G G GG SIYG +F DE + L G GIL+MAN+G +TNGSQFF+
Sbjct: 56 IIKDFMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKII 170
T LD + +V ++ V T +P VKII
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 69/166 (41%), Positives = 88/166 (53%), Gaps = 19/166 (11%)
Query: 7 PLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHR 66
P V+L+ S+ IV+EL+ PKT +NF L +G +Y GT FHR
Sbjct: 12 PNVYLETSMG-----IIVLELYWKHAPKTCKNFAEL--ARRG---------YYNGTKFHR 55
Query: 67 IIKGFMIQGGDFSKGNGTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFI 125
IIK FMIQGGD G G GG SIYG +F DE + L G GIL+MAN+G +TNGSQFF+
Sbjct: 56 IIKDFMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 126 TFRRQHHLDXXXXXXXXXXXXLNIVKKIEQVGT-GDGKPAQPVKII 170
T LD + +V ++ V T +P VKII
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 82/151 (54%), Gaps = 14/151 (9%)
Query: 23 IVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGN 82
I I LF KT +NF + G +Y +FHR+IK FM+Q GD S G+
Sbjct: 17 IHISLFYKECKKTVQNF--------SVHSING---YYNNCIFHRVIKHFMVQTGDPS-GD 64
Query: 83 GTGGESIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDXXXXXXX 141
GTGGESI+G +F DE F L+H+ P ++SMAN G NTNGSQFFIT LD
Sbjct: 65 GTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFG 124
Query: 142 XXXXXLNIVKKIEQVGTGD-GKPAQPVKIID 171
IV IE+V T KP + +KI++
Sbjct: 125 KVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 79/153 (51%), Gaps = 15/153 (9%)
Query: 23 IVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGN 82
I IEL++ PK NF LC +Y T+FHR++ GF++QGGD G
Sbjct: 36 IDIELWSKEAPKACRNFIQLCL-----------EAYYDNTIFHRVVPGFIVQGGD-PTGT 83
Query: 83 GTGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDXXXXXXX 141
G+GGESIYG F DE + +L N G+++MAN+G++ NGSQFF T R L+
Sbjct: 84 GSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFG 143
Query: 142 XXX--XXLNIVKKIEQVGTGDGKPAQPVKIIDC 172
N+++ E D +P P KI C
Sbjct: 144 KVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 70/115 (60%), Gaps = 17/115 (14%)
Query: 25 IELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGT 84
ELF PK +NF AL ++G +YK T+FH+ IKGF+IQGGD G G
Sbjct: 30 FELFCSQCPKACKNFLAL--------SASG---YYKNTIFHKNIKGFIIQGGD-PTGTGK 77
Query: 85 GGESIYGGKFTDENF-KLDHNGPGILSMANSGA----NTNGSQFFITFRRQHHLD 134
GGESIYG F DE + +L ++ GILSMA+ GA NTNGSQFFIT+ L+
Sbjct: 78 GGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLN 132
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 84/149 (56%), Gaps = 17/149 (11%)
Query: 25 IELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGT 84
+EL D+ PKT ENF LC K +Y GT+FHR I+ F+IQGGD G GT
Sbjct: 33 LELHCDLTPKTCENFIRLC-----------KKHYYDGTIFHRSIRNFVIQGGD-PTGTGT 80
Query: 85 GGESIYGGKFTDENFK--LDHNGPGILSMANSGANTNGSQFFITFRRQHHLDXXXXXXXX 142
GGES +G F DE F+ L H G GILSMANSG N+N SQFFITFR +LD
Sbjct: 81 GGESYWGKPFKDE-FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGR 139
Query: 143 XXXXLNIVKKIEQVGTG--DGKPAQPVKI 169
+++ +E V + +P + ++I
Sbjct: 140 VVGGFDVLTAMENVESDPKTDRPKEEIRI 168
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 77/154 (50%), Gaps = 10/154 (6%)
Query: 23 IVIELFADVVPKTAENFRALCTGEKGIG--KSTGKPL--HYKGTMFHRIIKGFMIQGGDF 78
I I LF + PKT NF L G K ++G P Y G +FHR+I+GFMIQGGD
Sbjct: 35 IKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDP 94
Query: 79 SKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDXXXX 138
+ G + +F E L + P +L+MAN+G TNGSQFFIT + HL+
Sbjct: 95 TGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHT 151
Query: 139 X--XXXXXXXLNIVKKIEQVGT-GDGKPAQPVKI 169
+V+ I + T G+ +P PV I
Sbjct: 152 IFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 23/146 (15%)
Query: 25 IELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGT 84
IEL AD+ P+ ++F LC + ++ T+FHR I+ FMIQGG +
Sbjct: 20 IELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAELRQPS 68
Query: 85 GGESIY-----------GGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHH 132
+ + G F DE + +L H G G+LSMAN G ++N S+FFITF+ H
Sbjct: 69 KKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEH 128
Query: 133 LDXXXXXXXXXXXXLNIVKKIEQVGT 158
L+ L+++++ E++ T
Sbjct: 129 LNNKHTIFGRVVGGLDVLRQWEKLET 154
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 29/127 (22%)
Query: 25 IELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGT 84
+EL+A P NF LC +G +Y T+FHR++K F++QGGD G G
Sbjct: 35 VELWARECPLACRNFVQLCL--EG---------YYVNTIFHRVVKDFIVQGGD-PTGTGR 82
Query: 85 GG-ESIYGGK-FTDENF-KLDHNGPGILSMANSGAN--------------TNGSQFFITF 127
GG ++ + GK F E +L G++ +AN G + TNG+QFFIT
Sbjct: 83 GGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITL 142
Query: 128 RRQHHLD 134
R L+
Sbjct: 143 ARADVLN 149
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 23 IVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKG 81
I ++LFAD P+TA NF K HY GT+FHR+I GFMIQGG F G
Sbjct: 11 ITLKLFADKAPETAANFEQYV-----------KDGHYDGTIFHRVIDGFMIQGGGFEPG 58
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKS--TGKPLH---- 58
KNP V++D+ ++ + + ++ I+LF D P ENF L G+ S TGK +
Sbjct: 13 KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHI 72
Query: 59 ---YKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGK-----FTDENFKLDHNGPGILS 110
Y+G FH ++ I GD NG+ ++Y + F D + H G+LS
Sbjct: 73 NRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLS 130
Query: 111 MA----NSGANTNGSQFFITF 127
+ SG S F IT
Sbjct: 131 LVPYTDESGNRYYDSTFMITL 151
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 51/109 (46%), Gaps = 25/109 (22%)
Query: 23 IVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGN 82
IVI+ F D P+T +NF C + Y T+FHR+I GFMIQGG F G
Sbjct: 11 IVIKTFDDKAPETVKNFLDYC-----------REGFYNNTIFHRVINGFMIQGGGFEPG- 58
Query: 83 GTGGESIYGGKFTDENFKLDHNG-----PGILSMANSGA-NTNGSQFFI 125
K T E K + N G L+MA + A ++ +QFFI
Sbjct: 59 -------MKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFI 100
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 23 IVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKG 81
I +EL PKT ENF L +KG HY GT+FHR+I GFMIQGG F G
Sbjct: 15 IKLELDEAKAPKTVENF--LNYVKKG---------HYDGTIFHRVINGFMIQGGGFEPG 62
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 51/109 (46%), Gaps = 25/109 (22%)
Query: 23 IVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGN 82
IVI+ F D P+T +NF C + Y T+FHR+I GFMIQGG F G
Sbjct: 11 IVIKTFDDKAPETVKNFLDYC-----------REGFYNNTIFHRVINGFMIQGGGFEPG- 58
Query: 83 GTGGESIYGGKFTDENFKLDHNG-----PGILSMANSGA-NTNGSQFFI 125
K T E K + N G L+MA + A ++ +QFFI
Sbjct: 59 -------MKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFI 100
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 14/125 (11%)
Query: 59 YKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSG-AN 117
Y T FHR+I GFMIQGG F++ + D + N G ++MA + +
Sbjct: 41 YNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLR---NTRGTIAMARTADKD 97
Query: 118 TNGSQFFITFRRQHHL-----DXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQ-----PV 167
+ SQFFI L D +++ KI QV T D P Q PV
Sbjct: 98 SATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPV 157
Query: 168 KIIDC 172
I+
Sbjct: 158 VILSA 162
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 14/125 (11%)
Query: 59 YKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKLDHNGPGILSMANSG-AN 117
Y T FHR+I GFMIQGG F++ + D + N G ++MA + +
Sbjct: 41 YNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLR---NTRGTIAMARTADKD 97
Query: 118 TNGSQFFITFRRQHHL-----DXXXXXXXXXXXXLNIVKKIEQVGTGDGKPAQ-----PV 167
+ SQFFI L D +++ KI QV T D P Q PV
Sbjct: 98 SATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPV 157
Query: 168 KIIDC 172
I+
Sbjct: 158 VILSA 162
>pdb|4AYA|A Chain A, Crystal Structure Of Id2 Hlh Homodimer At 2.1a Resolution
pdb|4AYA|B Chain B, Crystal Structure Of Id2 Hlh Homodimer At 2.1a Resolution
Length = 97
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 430 SPARRVSEPSASNHSRGLSRSPSPDGTP 457
SP R V + S S+HS G+SRS +P P
Sbjct: 6 SPVRSVRKNSLSDHSLGISRSKTPVDDP 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,743,034
Number of Sequences: 62578
Number of extensions: 468669
Number of successful extensions: 889
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 76
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)