Query 006501
Match_columns 643
No_of_seqs 256 out of 1431
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 00:11:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 1.3E-56 2.8E-61 467.6 15.9 174 5-178 7-181 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 5.8E-48 1.3E-52 373.9 16.7 165 7-179 40-206 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 1.9E-47 4.1E-52 350.7 13.1 170 3-175 7-177 (177)
4 PTZ00221 cyclophilin; Provisio 100.0 4.5E-44 9.8E-49 364.5 20.9 174 3-180 49-224 (249)
5 PTZ00060 cyclophilin; Provisio 100.0 4.3E-43 9.3E-48 344.1 20.6 170 4-175 13-182 (183)
6 cd01926 cyclophilin_ABH_like c 100.0 3.4E-43 7.4E-48 338.9 19.3 164 7-173 1-164 (164)
7 PLN03149 peptidyl-prolyl isome 100.0 5.2E-43 1.1E-47 344.4 19.2 170 3-175 15-186 (186)
8 KOG0111 Cyclophilin-type pepti 100.0 1.3E-42 2.8E-47 340.9 10.4 165 4-176 134-298 (298)
9 KOG0881 Cyclophilin type pepti 100.0 3.6E-42 7.9E-47 312.7 9.5 154 4-174 7-162 (164)
10 cd01923 cyclophilin_RING cyclo 100.0 8.8E-40 1.9E-44 313.9 18.4 155 8-179 1-157 (159)
11 COG0652 PpiB Peptidyl-prolyl c 100.0 1.1E-39 2.3E-44 312.2 16.1 148 9-175 2-157 (158)
12 cd01928 Cyclophilin_PPIL3_like 100.0 1E-38 2.2E-43 304.8 17.6 149 8-173 2-152 (153)
13 KOG0883 Cyclophilin type, U bo 100.0 1.9E-39 4.2E-44 338.6 12.2 161 4-181 275-437 (518)
14 cd01927 cyclophilin_WD40 cyclo 100.0 1.6E-38 3.5E-43 301.9 17.0 145 11-172 2-148 (148)
15 cd01921 cyclophilin_RRM cyclop 100.0 1.7E-38 3.7E-43 306.9 17.4 153 11-180 2-164 (166)
16 cd01922 cyclophilin_SpCYP2_lik 100.0 3E-38 6.5E-43 299.5 16.8 144 11-171 2-146 (146)
17 cd01925 cyclophilin_CeCYP16-li 100.0 3.3E-37 7.1E-42 299.5 18.9 159 4-179 3-164 (171)
18 PRK10903 peptidyl-prolyl cis-t 100.0 2.2E-36 4.8E-41 298.4 18.4 153 4-175 26-189 (190)
19 KOG0885 Peptidyl-prolyl cis-tr 100.0 4.1E-37 9E-42 320.4 12.9 159 4-179 10-171 (439)
20 KOG0882 Cyclophilin-related pe 100.0 3.3E-37 7.2E-42 327.3 12.2 151 7-174 405-557 (558)
21 KOG0884 Similar to cyclophilin 100.0 6.3E-37 1.4E-41 277.2 11.7 155 8-179 2-159 (161)
22 PRK10791 peptidyl-prolyl cis-t 100.0 7.2E-36 1.6E-40 288.4 17.9 148 8-174 1-162 (164)
23 KOG0865 Cyclophilin type pepti 100.0 7.1E-37 1.5E-41 294.9 10.0 163 5-175 2-167 (167)
24 cd01920 cyclophilin_EcCYP_like 100.0 3.9E-35 8.4E-40 280.7 16.1 142 11-171 2-154 (155)
25 PF00160 Pro_isomerase: Cyclop 100.0 2E-34 4.3E-39 273.2 17.6 151 10-174 1-155 (155)
26 cd00317 cyclophilin cyclophili 100.0 8.2E-34 1.8E-38 266.7 16.8 144 10-171 1-146 (146)
27 KOG0415 Predicted peptidyl pro 100.0 2.3E-34 4.9E-39 297.9 13.3 157 8-181 2-168 (479)
28 cd01924 cyclophilin_TLP40_like 100.0 1E-32 2.2E-37 269.4 14.6 126 19-155 5-164 (176)
29 KOG0882 Cyclophilin-related pe 97.9 1.1E-05 2.3E-10 88.2 5.2 149 17-177 108-264 (558)
30 PRK00969 hypothetical protein; 96.7 0.0053 1.2E-07 68.8 8.3 104 19-154 202-305 (508)
31 TIGR03268 methan_mark_3 putati 96.6 0.0061 1.3E-07 68.2 8.5 105 19-155 199-303 (503)
32 TIGR03268 methan_mark_3 putati 96.6 0.009 1.9E-07 66.9 9.2 114 22-155 376-495 (503)
33 PF12903 DUF3830: Protein of u 96.5 0.0085 1.8E-07 57.7 7.4 106 22-155 9-130 (147)
34 COG4070 Predicted peptidyl-pro 96.2 0.013 2.7E-07 63.9 7.6 106 18-155 200-305 (512)
35 PRK00969 hypothetical protein; 96.2 0.027 5.8E-07 63.4 10.4 113 22-155 379-497 (508)
36 COG4070 Predicted peptidyl-pro 95.5 0.037 7.9E-07 60.5 7.6 114 22-155 377-498 (512)
37 KOG3116 Predicted C3H1-type Zn 95.4 0.034 7.4E-07 53.4 6.2 15 295-309 142-156 (177)
38 KOG2985 Uncharacterized conser 95.0 0.015 3.3E-07 59.9 2.6 13 280-292 273-285 (306)
39 PF04126 Cyclophil_like: Cyclo 93.0 0.27 5.8E-06 45.8 6.6 103 11-155 3-113 (120)
40 PF10500 SR-25: Nuclear RNA-sp 84.5 0.41 8.8E-06 49.0 0.9 10 253-262 81-90 (225)
41 KOG0526 Nucleosome-binding fac 82.9 20 0.00044 41.3 13.3 30 101-130 371-403 (615)
42 PHA03001 putative virion core 71.0 13 0.00027 35.4 6.4 50 8-70 5-60 (132)
43 KOG2140 Uncharacterized conser 69.3 2.9 6.2E-05 47.9 2.1 17 117-142 619-635 (739)
44 COG2164 Uncharacterized conser 58.2 15 0.00033 33.8 4.2 33 123-155 79-117 (126)
45 PF06138 Chordopox_E11: Chordo 55.7 41 0.00089 32.0 6.7 50 8-70 5-61 (130)
46 KOG3794 CBF1-interacting corep 51.9 4.6 0.0001 44.6 -0.1 17 30-46 94-110 (453)
47 KOG2236 Uncharacterized conser 39.7 15 0.00033 41.5 1.5 31 118-150 234-264 (483)
48 KOG3869 Uncharacterized conser 35.9 10 0.00022 42.4 -0.6 15 86-100 83-97 (450)
49 KOG3064 RNA-binding nuclear pr 30.9 22 0.00048 37.6 0.9 49 227-276 235-283 (303)
50 COG2927 HolC DNA polymerase II 29.3 1.2E+02 0.0027 29.5 5.6 98 22-146 3-111 (144)
51 PF05913 DUF871: Bacterial pro 29.2 30 0.00065 38.2 1.7 51 104-155 298-349 (357)
52 PF06375 BLVR: Bovine leukaemi 26.9 17 0.00036 35.7 -0.7 73 150-234 40-112 (154)
53 KOG3953 SOCS box protein SSB-1 26.4 2E+02 0.0043 30.2 6.8 36 9-44 71-107 (242)
54 KOG2740 Clathrin-associated pr 25.3 33 0.00071 38.0 1.1 148 22-177 66-242 (418)
55 COG0026 PurK Phosphoribosylami 24.9 1.1E+02 0.0023 34.3 4.9 52 121-172 248-309 (375)
56 KOG0107 Alternative splicing f 24.6 1.6E+02 0.0035 29.8 5.5 61 515-608 122-182 (195)
57 KOG2548 SWAP mRNA splicing reg 22.9 32 0.0007 39.6 0.5 7 37-43 38-44 (653)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-56 Score=467.56 Aligned_cols=174 Identities=68% Similarity=1.119 Sum_probs=169.5
Q ss_pred CCCeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCC
Q 006501 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGT 84 (643)
Q Consensus 5 ~nP~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~ 84 (643)
.||+|||||+|||.++|+||||||.++||+||+||+.||+|++|.+..+++.++|+|+.|||||++||||||||+.++|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 59999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CCccccCCcccCCCCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCC-CCc
Q 006501 85 GGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGD-GKP 163 (643)
Q Consensus 85 gg~si~g~~~~dE~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~~-gkP 163 (643)
||++|||.+|+||+|.|+|+.++||+|||.|+|+||||||||+.++|||||+|+|||+||.|++||..|+++.|++ .+|
T Consensus 87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP 166 (372)
T KOG0546|consen 87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP 166 (372)
T ss_pred CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999984 589
Q ss_pred cCCeEeceeeecccc
Q 006501 164 AQPVKIIDCGEFSES 178 (643)
Q Consensus 164 ~~~I~I~~cg~L~d~ 178 (643)
+.+|.|.+||+|...
T Consensus 167 ~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 167 LADVVISDCGELVKK 181 (372)
T ss_pred ccceEeccccccccc
Confidence 999999999998763
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-48 Score=373.88 Aligned_cols=165 Identities=62% Similarity=1.063 Sum_probs=158.3
Q ss_pred CeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhc-CCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCC
Q 006501 7 PLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCT-GEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTG 85 (643)
Q Consensus 7 P~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lct-g~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~g 85 (643)
-+|||||.+|++++|+|+|+||++++|+||+||.+||+ +.++.| |.|+.|||||+||||||||++.++++|
T Consensus 40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g--------Y~gS~FhRVi~nfmIQGGd~t~g~gtG 111 (217)
T KOG0880|consen 40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG--------YKGSKFHRVIPNFMIQGGDFTKGDGTG 111 (217)
T ss_pred eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc--------cCCceeeeeecCceeecCccccCCCCC
Confidence 47999999999999999999999999999999999999 666554 999999999999999999999999999
Q ss_pred CccccCCcccCCCCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCcc
Q 006501 86 GESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPA 164 (643)
Q Consensus 86 g~si~g~~~~dE~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~-~gkP~ 164 (643)
+.+|||.+|+||||.|+|+.+|.|+|||.|+|+||||||||+...+||||+|+|||+|++||+||.+|+.+.|+ .++|+
T Consensus 112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~ 191 (217)
T KOG0880|consen 112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL 191 (217)
T ss_pred CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 68999
Q ss_pred CCeEeceeeeccccc
Q 006501 165 QPVKIIDCGEFSESK 179 (643)
Q Consensus 165 ~~I~I~~cg~L~d~~ 179 (643)
++|+|.+||+|....
T Consensus 192 e~v~I~~~g~l~~~~ 206 (217)
T KOG0880|consen 192 EDVVIANCGELPVEY 206 (217)
T ss_pred ccEEEeecCcccccc
Confidence 999999999987654
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-47 Score=350.67 Aligned_cols=170 Identities=62% Similarity=1.094 Sum_probs=162.4
Q ss_pred CCCCCeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCC
Q 006501 3 EKKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGN 82 (643)
Q Consensus 3 ~k~nP~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~ 82 (643)
...||+||||++|||.++|+|.||||++++|+|++||.++|+|+.- ..+++.-|+++.|||||++|||||||+.+++
T Consensus 7 ~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r---~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gD 83 (177)
T KOG0879|consen 7 SPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR---KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGD 83 (177)
T ss_pred CCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc---cCCccccccccchHHHhhhheeccCceecCC
Confidence 3569999999999999999999999999999999999999999842 3457778999999999999999999999999
Q ss_pred CCCCccccCCcccCCCCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CC
Q 006501 83 GTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DG 161 (643)
Q Consensus 83 g~gg~si~g~~~~dE~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~-~g 161 (643)
|+|..+||+.+|.||||.|+|+.+|+|+|||.|+++||.|||||.....+||++|+|||+|++||.|+.+|+++++. ++
T Consensus 84 GtG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~Nn 163 (177)
T KOG0879|consen 84 GTGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNN 163 (177)
T ss_pred CceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred CccCCeEeceeeec
Q 006501 162 KPAQPVKIIDCGEF 175 (643)
Q Consensus 162 kP~~~I~I~~cg~L 175 (643)
+|..+|.|+.||++
T Consensus 164 kPKl~v~i~qCGem 177 (177)
T KOG0879|consen 164 KPKLPVVIVQCGEM 177 (177)
T ss_pred CCCCcEEEeecccC
Confidence 99999999999974
No 4
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=4.5e-44 Score=364.52 Aligned_cols=174 Identities=39% Similarity=0.578 Sum_probs=160.3
Q ss_pred CCCCCeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecC-ceEEecCCCCC
Q 006501 3 EKKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKG-FMIQGGDFSKG 81 (643)
Q Consensus 3 ~k~nP~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipg-fvIQgGd~~~~ 81 (643)
+..+|+|||||+|||.++|+|+||||.+.||+||+||+.||+|..+.+..++..++|+|+.||||+++ ||||+||+..
T Consensus 49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~- 127 (249)
T PTZ00221 49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS- 127 (249)
T ss_pred CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence 45699999999999999999999999999999999999999998877666666778999999999985 8999999752
Q ss_pred CCCCCccccCCcccCCCCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-C
Q 006501 82 NGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-D 160 (643)
Q Consensus 82 ~g~gg~si~g~~~~dE~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~-~ 160 (643)
.+..+||..|.+|++.++|+.+|+|+||+.++|+++|||||||.++++||++|+|||+||+||+||++|+.++++ +
T Consensus 128 ---~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~ 204 (249)
T PTZ00221 128 ---FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV 204 (249)
T ss_pred ---CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCC
Confidence 355678899999999999999999999999999999999999999999999999999999999999999999976 7
Q ss_pred CCccCCeEeceeeecccccc
Q 006501 161 GKPAQPVKIIDCGEFSESKI 180 (643)
Q Consensus 161 gkP~~~I~I~~cg~L~d~~~ 180 (643)
++|+.+|+|.+|++|+++..
T Consensus 205 grP~~~V~I~~Cgvl~~~~p 224 (249)
T PTZ00221 205 GRPLLPVTVSFCGALTGEKP 224 (249)
T ss_pred CCCCCCeEEEECeEecCCCC
Confidence 89999999999999998753
No 5
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=4.3e-43 Score=344.12 Aligned_cols=170 Identities=64% Similarity=1.079 Sum_probs=158.7
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCC
Q 006501 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (643)
Q Consensus 4 k~nP~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g 83 (643)
.++|+||||++++|..+|+|+||||.+.||+||+||++||+|..... .++.+||+||.||||+++|||||||+..+++
T Consensus 13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g 90 (183)
T PTZ00060 13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNG 90 (183)
T ss_pred CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence 46899999999999999999999999999999999999998764321 3467899999999999999999999887788
Q ss_pred CCCccccCCcccCCCCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCCCCc
Q 006501 84 TGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKP 163 (643)
Q Consensus 84 ~gg~si~g~~~~dE~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~~gkP 163 (643)
.++.++|+..+++|++.+.|+.+|+|+|++.+++++++||||||.++++||++|||||+||+|||||++|+.+++.++.|
T Consensus 91 ~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P 170 (183)
T PTZ00060 91 TGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYP 170 (183)
T ss_pred CCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCC
Confidence 89999999999999889999999999999999999999999999999999999999999999999999999999988899
Q ss_pred cCCeEeceeeec
Q 006501 164 AQPVKIIDCGEF 175 (643)
Q Consensus 164 ~~~I~I~~cg~L 175 (643)
+.+|+|++||+|
T Consensus 171 ~~~v~I~~cg~~ 182 (183)
T PTZ00060 171 KKPVVVTDCGEL 182 (183)
T ss_pred cCCeEEEEeEEc
Confidence 999999999987
No 6
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=3.4e-43 Score=338.86 Aligned_cols=164 Identities=71% Similarity=1.233 Sum_probs=153.5
Q ss_pred CeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCC
Q 006501 7 PLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGG 86 (643)
Q Consensus 7 P~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg 86 (643)
|+||||+.++|..+|+|+||||.++||+||+||++||++..+.+. +..||++|.||||+++|||||||+..+++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~ 77 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG 77 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence 789999999999999999999999999999999999987654321 44589999999999999999999877788889
Q ss_pred ccccCCcccCCCCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCCCCccCC
Q 006501 87 ESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKPAQP 166 (643)
Q Consensus 87 ~si~g~~~~dE~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~~gkP~~~ 166 (643)
.++|+..|++|++.+.|+.+|+|+||+.+++++++||||||.++++||++|+|||+|++|||||++|+++++++++|+.+
T Consensus 78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~ 157 (164)
T cd01926 78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKK 157 (164)
T ss_pred CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred eEeceee
Q 006501 167 VKIIDCG 173 (643)
Q Consensus 167 I~I~~cg 173 (643)
|+|.+||
T Consensus 158 i~I~~cG 164 (164)
T cd01926 158 VVIADCG 164 (164)
T ss_pred eEEEECC
Confidence 9999996
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=5.2e-43 Score=344.40 Aligned_cols=170 Identities=61% Similarity=1.030 Sum_probs=155.8
Q ss_pred CCCCCeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCC
Q 006501 3 EKKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGN 82 (643)
Q Consensus 3 ~k~nP~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~ 82 (643)
+.+||+|||||++++..+|+|+||||.+.||+||+||+.||+++... .+....|++|.||||+++|||||||+..++
T Consensus 15 ~~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~ 91 (186)
T PLN03149 15 NPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGD 91 (186)
T ss_pred CCCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCC
Confidence 45689999999999999999999999999999999999999876321 112234999999999999999999988788
Q ss_pred CCCCccccCCcccCCCCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEE-cCHHHHHHHHhcCCC-C
Q 006501 83 GTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQVGTG-D 160 (643)
Q Consensus 83 g~gg~si~g~~~~dE~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVI-eGmdVLdkIe~vpt~-~ 160 (643)
+.++..+|+..|++|++.+.|+.+|+|+|++.+++++++||||||.++++||++|+|||+|+ +||+||++|+.++++ +
T Consensus 92 g~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~ 171 (186)
T PLN03149 92 GTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPN 171 (186)
T ss_pred CCCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCC
Confidence 89999999999999998999999999999999999999999999999999999999999999 899999999999995 7
Q ss_pred CCccCCeEeceeeec
Q 006501 161 GKPAQPVKIIDCGEF 175 (643)
Q Consensus 161 gkP~~~I~I~~cg~L 175 (643)
++|+.+|+|.+||++
T Consensus 172 ~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 172 NRPKLACVISECGEM 186 (186)
T ss_pred CCCcCCeEEEeCEeC
Confidence 899999999999985
No 8
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-42 Score=340.95 Aligned_cols=165 Identities=64% Similarity=1.071 Sum_probs=161.3
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCC
Q 006501 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (643)
Q Consensus 4 k~nP~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g 83 (643)
..||.|||++.||+...|+|+++|..++.|+|++||..||+|+.|.| |+|+.||||||.||+||||+++++|
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng 205 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG 205 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence 46999999999999999999999999999999999999999999887 9999999999999999999999999
Q ss_pred CCCccccCCcccCCCCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCCCCc
Q 006501 84 TGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKP 163 (643)
Q Consensus 84 ~gg~si~g~~~~dE~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~~gkP 163 (643)
+|+.+|||.+|.||||.|+|..+|+|+|||.|+|+||||||||+....|||++|+|||.||+||+||.+|++.++..|+|
T Consensus 206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp 285 (298)
T KOG0111|consen 206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKP 285 (298)
T ss_pred CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEeceeeecc
Q 006501 164 AQPVKIIDCGEFS 176 (643)
Q Consensus 164 ~~~I~I~~cg~L~ 176 (643)
.+.|+|..||+|.
T Consensus 286 ~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 286 QQKVKIVECGEIE 298 (298)
T ss_pred ceEEEEEeccccC
Confidence 9999999999873
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-42 Score=312.70 Aligned_cols=154 Identities=51% Similarity=0.853 Sum_probs=145.7
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCC
Q 006501 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (643)
Q Consensus 4 k~nP~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g 83 (643)
-+-|.|+|+|++| .|+||||-+.||+||.||.+|+ +.+||+|+.|||||++|||||||+ +++|
T Consensus 7 ~q~~~V~LeTsmG-----~i~~ElY~kHaP~TC~NF~eLa-----------rrgYYn~v~FHRii~DFmiQGGDP-TGTG 69 (164)
T KOG0881|consen 7 WQPPNVTLETSMG-----KITLELYWKHAPRTCQNFAELA-----------RRGYYNGVIFHRIIKDFMIQGGDP-TGTG 69 (164)
T ss_pred CCCCeEEEeeccc-----ceehhhhhhcCcHHHHHHHHHH-----------hcccccceeeeehhhhheeecCCC-CCCC
Confidence 3679999999988 9999999999999999999999 667999999999999999999998 6899
Q ss_pred CCCccccCCcccCC-CCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CC
Q 006501 84 TGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DG 161 (643)
Q Consensus 84 ~gg~si~g~~~~dE-~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~-~g 161 (643)
.|+.+|||.+|+|| +..|+|...|+|+|||.|||+|||||||||++.+|||++||+||+|+.||+||..|..+.|+ .+
T Consensus 70 RGGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~D 149 (164)
T KOG0881|consen 70 RGGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSD 149 (164)
T ss_pred CCccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCC
Confidence 99999999999999 56799999999999999999999999999999999999999999999999999999999998 57
Q ss_pred CccCCeEeceeee
Q 006501 162 KPAQPVKIIDCGE 174 (643)
Q Consensus 162 kP~~~I~I~~cg~ 174 (643)
+|+.+|+|+.+..
T Consensus 150 RPi~~~kIika~~ 162 (164)
T KOG0881|consen 150 RPIDEVKIIKAYP 162 (164)
T ss_pred CCccceeeEeeec
Confidence 8999999998753
No 10
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=8.8e-40 Score=313.89 Aligned_cols=155 Identities=51% Similarity=0.837 Sum_probs=143.9
Q ss_pred eEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCc
Q 006501 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (643)
Q Consensus 8 ~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~ 87 (643)
+|.|+|+.| +|+||||.++||+||+||++||+ .+||+|+.||||+++|||||||+. +++.++.
T Consensus 1 ~v~~~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~-----------~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~ 63 (159)
T cd01923 1 YVRLHTNKG-----DLNLELHCDKAPKACENFIKLCK-----------KGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGE 63 (159)
T ss_pred CEEEEEccc-----cEEEEEeCCCChHHHHHHHHHHh-----------cCccCCcEEEEEeCCcEEEecccC-CCCCCCc
Confidence 478888877 99999999999999999999995 359999999999999999999974 6788899
Q ss_pred cccCCcccCCC-CCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCccC
Q 006501 88 SIYGGKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQ 165 (643)
Q Consensus 88 si~g~~~~dE~-~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~-~gkP~~ 165 (643)
++|+..|.+|. ..+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+|++|||||++|+.++++ +++|+.
T Consensus 64 ~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~ 143 (159)
T cd01923 64 SIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKE 143 (159)
T ss_pred cccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCC
Confidence 99999999984 5688999999999999999999999999999999999999999999999999999999886 689999
Q ss_pred CeEeceeeeccccc
Q 006501 166 PVKIIDCGEFSESK 179 (643)
Q Consensus 166 ~I~I~~cg~L~d~~ 179 (643)
+|+|.+|+++.+|+
T Consensus 144 ~i~I~~~~i~~dpf 157 (159)
T cd01923 144 EIKIEDTSVFVDPF 157 (159)
T ss_pred CeEEEEeEEEeCCC
Confidence 99999999999986
No 11
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=312.17 Aligned_cols=148 Identities=52% Similarity=0.844 Sum_probs=132.2
Q ss_pred EEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCcc
Q 006501 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGES 88 (643)
Q Consensus 9 V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~s 88 (643)
|.|+|+.| +|+|+||+++||+||+||++|| +.+||+|+.|||||++|||||||++.+++.+++
T Consensus 2 v~~~t~~G-----~I~ieL~~~~aP~Tv~NF~~l~-----------~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~- 64 (158)
T COG0652 2 VILETNKG-----DITIELYPDKAPKTVANFLQLV-----------KEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP- 64 (158)
T ss_pred ceeeccCC-----CEEEEECCCcCcHHHHHHHHHH-----------HcCCCCCceEEEeecCceeecCCCCCCCCCCCC-
Confidence 56677666 9999999999999999999999 456999999999999999999999877788887
Q ss_pred ccCCcccCCCCCCCCCC--CceEeecccC-CCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCC-----
Q 006501 89 IYGGKFTDENFKLDHNG--PGILSMANSG-ANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGD----- 160 (643)
Q Consensus 89 i~g~~~~dE~~~l~h~~--rGlLSma~~g-~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~~----- 160 (643)
+.+|++|++.+.|+. +|+|+||+.+ ||+++||||||+.+++|||++|+|||+|++|||||++|+++.+..
T Consensus 65 --~~~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~ 142 (158)
T COG0652 65 --GPPFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQ 142 (158)
T ss_pred --CCCCcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCccc
Confidence 478999988888877 9999999999 999999999999999999999999999999999999999987763
Q ss_pred CCccCCeEeceeeec
Q 006501 161 GKPAQPVKIIDCGEF 175 (643)
Q Consensus 161 gkP~~~I~I~~cg~L 175 (643)
..|..+|+|..+.++
T Consensus 143 ~~~~~~~~i~~~~~~ 157 (158)
T COG0652 143 DVPADPVKILSVKIV 157 (158)
T ss_pred CCCCCCeEEeeeeee
Confidence 346677888776553
No 12
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=1e-38 Score=304.83 Aligned_cols=149 Identities=50% Similarity=0.848 Sum_probs=137.7
Q ss_pred eEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCc
Q 006501 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (643)
Q Consensus 8 ~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~ 87 (643)
.|.|+|+.| +|+||||+++||+||+||++||++ +||+|+.||||+++|||||||+. +++.++.
T Consensus 2 ~v~l~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~~-----------g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~ 64 (153)
T cd01928 2 SVTLHTNLG-----DIKIELFCDDCPKACENFLALCAS-----------GYYNGCIFHRNIKGFMVQTGDPT-GTGKGGE 64 (153)
T ss_pred EEEEEEccc-----cEEEEEcCCCCcHHHHHHHHHHhc-----------CccCCcEEEEeCCCCEEEccccC-CCCCCCC
Confidence 378888877 999999999999999999999954 49999999999999999999974 6678888
Q ss_pred cccCCcccCCCC-CCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCccC
Q 006501 88 SIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQ 165 (643)
Q Consensus 88 si~g~~~~dE~~-~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~-~gkP~~ 165 (643)
.+|+..|++|.. .+.|+.+|+|+||+.++++++|||||||+++++||++|+|||+|++|||||++|+.++++ +++|+.
T Consensus 65 ~~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~ 144 (153)
T cd01928 65 SIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLE 144 (153)
T ss_pred ccCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcC
Confidence 999999999965 678989999999999999999999999999999999999999999999999999999986 689999
Q ss_pred CeEeceee
Q 006501 166 PVKIIDCG 173 (643)
Q Consensus 166 ~I~I~~cg 173 (643)
+|+|.+|.
T Consensus 145 ~i~I~~~~ 152 (153)
T cd01928 145 EIRIKDVT 152 (153)
T ss_pred CeEEEEeE
Confidence 99999984
No 13
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-39 Score=338.62 Aligned_cols=161 Identities=49% Similarity=0.794 Sum_probs=151.9
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCC
Q 006501 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (643)
Q Consensus 4 k~nP~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g 83 (643)
+++-+|-|.|..| .|.||||++.||.+|+|||+|| +.+||+|++|||.|.+|||||||+ +++|
T Consensus 275 Kkkgyvrl~Tn~G-----~lNlELhcd~~P~aceNFI~lc-----------~~gYYnnt~FHRsIrnFmiQGGDP-TGTG 337 (518)
T KOG0883|consen 275 KKKGYVRLVTNHG-----PLNLELHCDYAPRACENFITLC-----------KNGYYNNTIFHRSIRNFMIQGGDP-TGTG 337 (518)
T ss_pred cccceEEEeccCC-----ceeeEeecCcchHHHHHHHHHH-----------hcccccchHHHHHHHHHeeeCCCC-CCCC
Confidence 5677888888877 9999999999999999999999 566999999999999999999998 6999
Q ss_pred CCCccccCCcccCC-CCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CC
Q 006501 84 TGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DG 161 (643)
Q Consensus 84 ~gg~si~g~~~~dE-~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~-~g 161 (643)
.||++|||.+|.|| ...|.|+.+|+|+|||.|+|+||||||||+..+.|||++|||||+||.|+++|.+|++|+++ .+
T Consensus 338 ~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~D 417 (518)
T KOG0883|consen 338 RGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKD 417 (518)
T ss_pred CCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCC
Confidence 99999999999999 57899999999999999999999999999999999999999999999999999999999998 56
Q ss_pred CccCCeEeceeeeccccccc
Q 006501 162 KPAQPVKIIDCGEFSESKIQ 181 (643)
Q Consensus 162 kP~~~I~I~~cg~L~d~~~k 181 (643)
.|+.+|+|..+.++++|+.+
T Consensus 418 rP~e~I~i~~~~VFVdPfeE 437 (518)
T KOG0883|consen 418 RPKEEIKIEDAIVFVDPFEE 437 (518)
T ss_pred CcccceEEeeeEEeeCcHHH
Confidence 89999999999999999754
No 14
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.6e-38 Score=301.86 Aligned_cols=145 Identities=52% Similarity=0.831 Sum_probs=133.8
Q ss_pred EEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCcccc
Q 006501 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (643)
Q Consensus 11 ~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~si~ 90 (643)
|+|+.| +|+||||.++||+||+||++||++ +||+++.||||+++|||||||+ .+++.+++++|
T Consensus 2 i~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~~-----------g~Y~~~~f~Rvi~~f~iq~Gd~-~~~g~g~~~~~ 64 (148)
T cd01927 2 IHTTKG-----DIHIRLFPEEAPKTVENFTTHARN-----------GYYNNTIFHRVIKGFMIQTGDP-TGDGTGGESIW 64 (148)
T ss_pred eEeccc-----cEEEEEeCCCCcHHHHHHHHHhhc-----------CCcCCcEEEEEcCCcEEEeccc-CCCCCCCCccc
Confidence 567666 999999999999999999999954 4999999999999999999997 46788888999
Q ss_pred CCcccCCCC-CCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCccCCeE
Q 006501 91 GGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVK 168 (643)
Q Consensus 91 g~~~~dE~~-~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~-~gkP~~~I~ 168 (643)
+..|++|.. .+.|+.+|+|+||+.++++++|||||||.++++||++|+|||+|++|||||++|+.++++ +++|+.+|+
T Consensus 65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~ 144 (148)
T cd01927 65 GKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIK 144 (148)
T ss_pred CCccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeE
Confidence 999999965 789999999999999999999999999999999999999999999999999999999986 689999999
Q ss_pred ecee
Q 006501 169 IIDC 172 (643)
Q Consensus 169 I~~c 172 (643)
|.++
T Consensus 145 I~~~ 148 (148)
T cd01927 145 IINI 148 (148)
T ss_pred EEeC
Confidence 9863
No 15
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1.7e-38 Score=306.86 Aligned_cols=153 Identities=39% Similarity=0.657 Sum_probs=136.7
Q ss_pred EEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCcccc
Q 006501 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (643)
Q Consensus 11 ~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~si~ 90 (643)
|+|++| +|+||||.++||+||+||++||++ +||+|+.||||+++|||||||+. +++.++..+|
T Consensus 2 l~Ts~G-----~i~ieL~~~~aP~t~~nF~~L~~~-----------~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~ 64 (166)
T cd01921 2 LETTLG-----DLVIDLFTDECPLACLNFLKLCKL-----------KYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIY 64 (166)
T ss_pred cEeccC-----CEEEEEcCCCCCHHHHHHHHHHhc-----------CCcCCCEEEEEeCCceEEECCcC-CCCCCCcccc
Confidence 667766 999999999999999999999954 48999999999999999999984 6677777776
Q ss_pred C-------CcccCCC-CCCCCCCCceEeecccCCCCCCceEEEEecc-CccCCCCceEEEEEEcCHHHHHHHHhcCCC-C
Q 006501 91 G-------GKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFITFRR-QHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-D 160 (643)
Q Consensus 91 g-------~~~~dE~-~~l~h~~rGlLSma~~g~ns~gSqFFITL~~-~p~LDgkytVFGrVIeGmdVLdkIe~vpt~-~ 160 (643)
+ ..|.+|. ..++|+.+|+|+||+.++++++|||||||.+ +++||++|+|||+||+|||||++|+.++++ +
T Consensus 65 ~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~ 144 (166)
T cd01921 65 SQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDD 144 (166)
T ss_pred cccccccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCC
Confidence 4 2466664 4789999999999999999999999999975 799999999999999999999999999986 6
Q ss_pred CCccCCeEeceeeecccccc
Q 006501 161 GKPAQPVKIIDCGEFSESKI 180 (643)
Q Consensus 161 gkP~~~I~I~~cg~L~d~~~ 180 (643)
+.|+.+|+|..|++|.+|+.
T Consensus 145 ~~P~~~i~I~~~~i~~~pf~ 164 (166)
T cd01921 145 GRPLKDIRIKHTHILDDPFP 164 (166)
T ss_pred CCCCCCeEEEEEEEECCCCC
Confidence 89999999999999999863
No 16
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=3e-38 Score=299.46 Aligned_cols=144 Identities=51% Similarity=0.893 Sum_probs=132.6
Q ss_pred EEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCcccc
Q 006501 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (643)
Q Consensus 11 ~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~si~ 90 (643)
|+|+.| +|+||||.++||+||+||++||+. +||+++.||||+++||||||++. +++.++.++|
T Consensus 2 i~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~~-----------g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~ 64 (146)
T cd01922 2 LETTMG-----EITLELYWNHAPKTCKNFYELAKR-----------GYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIY 64 (146)
T ss_pred eEeccc-----cEEEEEcCCCCcHHHHHHHHHHhc-----------CCcCCcEEEEEcCCcEEEecccC-CCCCCccccc
Confidence 566655 999999999999999999999954 49999999999999999999974 6677888999
Q ss_pred CCcccCC-CCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCCCCccCCeEe
Q 006501 91 GGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKPAQPVKI 169 (643)
Q Consensus 91 g~~~~dE-~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~~gkP~~~I~I 169 (643)
+..|++| +..++|+.+|+|+|++.+++++++||||||+++|+||++|+|||+|++|||||++|+++++++++|+.+|+|
T Consensus 65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I 144 (146)
T cd01922 65 GKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKI 144 (146)
T ss_pred CCCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEE
Confidence 9999998 467899999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred ce
Q 006501 170 ID 171 (643)
Q Consensus 170 ~~ 171 (643)
+.
T Consensus 145 ~~ 146 (146)
T cd01922 145 LK 146 (146)
T ss_pred eC
Confidence 63
No 17
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.3e-37 Score=299.47 Aligned_cols=159 Identities=42% Similarity=0.714 Sum_probs=145.0
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCC
Q 006501 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (643)
Q Consensus 4 k~nP~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g 83 (643)
++.-.|+|+|+.| +|+||||.++||+||+||+.||+. +||+||.||||+++||||||++. +++
T Consensus 3 ~~~~~v~i~Ts~G-----~i~ieL~~~~~P~t~~nF~~L~~~-----------~~Y~~~~f~Rvi~~f~iQgGd~~-~~g 65 (171)
T cd01925 3 PTTGKVILKTTAG-----DIDIELWSKEAPKACRNFIQLCLE-----------GYYDNTIFHRVVPGFIIQGGDPT-GTG 65 (171)
T ss_pred CcccEEEEEEccc-----cEEEEEeCCCChHHHHHHHHHHhc-----------CCCCCCEEEEEcCCcEEEccccC-CCC
Confidence 3456799999877 999999999999999999999954 49999999999999999999974 678
Q ss_pred CCCccccCCcccCCCC-CCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEE-cCHHHHHHHHhcCCC-C
Q 006501 84 TGGESIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQVGTG-D 160 (643)
Q Consensus 84 ~gg~si~g~~~~dE~~-~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVI-eGmdVLdkIe~vpt~-~ 160 (643)
.++.++|+..|.+|.. .+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+|+ ++|++|++|++++++ +
T Consensus 66 ~g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~ 145 (171)
T cd01925 66 TGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKD 145 (171)
T ss_pred ccCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCC
Confidence 8889999999999854 578999999999999999999999999999999999999999999 468899999999986 6
Q ss_pred CCccCCeEeceeeeccccc
Q 006501 161 GKPAQPVKIIDCGEFSESK 179 (643)
Q Consensus 161 gkP~~~I~I~~cg~L~d~~ 179 (643)
++|+++|+|.+|+++.+|+
T Consensus 146 ~~P~~~i~I~~~~i~~~pf 164 (171)
T cd01925 146 ERPVYPPKITSVEVLENPF 164 (171)
T ss_pred CCcCCCeEEEEEEEEcCCc
Confidence 7999999999999998875
No 18
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=2.2e-36 Score=298.41 Aligned_cols=153 Identities=36% Similarity=0.547 Sum_probs=132.9
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCC
Q 006501 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (643)
Q Consensus 4 k~nP~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g 83 (643)
..++.|.|+|+.| +|+||||.++||+||+||++||+ .+||+|+.||||+++||||||++....+
T Consensus 26 ~~~~~v~l~T~~G-----~i~ieL~~~~aP~t~~NF~~L~~-----------~g~Ydg~~FhRvi~~f~iQgG~~~~~~~ 89 (190)
T PRK10903 26 KGDPHVLLTTSAG-----NIELELNSQKAPVSVKNFVDYVN-----------SGFYNNTTFHRVIPGFMIQGGGFTEQMQ 89 (190)
T ss_pred CCCcEEEEEeccc-----cEEEEEeCCCCcHHHHHHHHHHh-----------cCCcCCcEEEEEeCCceEEeCCcCCCCC
Confidence 3578899999877 99999999999999999999994 4599999999999999999999754321
Q ss_pred CCCccccCCcccCCCCCCCCCCCceEeecccC-CCCCCceEEEEeccCccCCC-----CceEEEEEEcCHHHHHHHHhcC
Q 006501 84 TGGESIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFFITFRRQHHLDG-----KHVVFGKVVKGLNIVKKIEQVG 157 (643)
Q Consensus 84 ~gg~si~g~~~~dE~~~l~h~~rGlLSma~~g-~ns~gSqFFITL~~~p~LDg-----kytVFGrVIeGmdVLdkIe~vp 157 (643)
...++..|.+|.....|+.+|+|+||+.+ +|+++|||||||.++++||+ +|+|||+|++|||||++|++++
T Consensus 90 ---~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~ 166 (190)
T PRK10903 90 ---QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP 166 (190)
T ss_pred ---CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCC
Confidence 22345678888655667789999999865 89999999999999999984 8999999999999999999999
Q ss_pred CCC-----CCccCCeEeceeeec
Q 006501 158 TGD-----GKPAQPVKIIDCGEF 175 (643)
Q Consensus 158 t~~-----gkP~~~I~I~~cg~L 175 (643)
+++ +.|+.+|+|.+|+++
T Consensus 167 ~~~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 167 THDVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred CCCCCCCCCcccCCeEEEEEEEe
Confidence 864 689999999999875
No 19
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-37 Score=320.43 Aligned_cols=159 Identities=41% Similarity=0.685 Sum_probs=148.8
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCC
Q 006501 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (643)
Q Consensus 4 k~nP~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g 83 (643)
...-+|.|.|+.| +|.||||+.+||++|.||++||.. |||+|+.||||+|+|+|||||+ +++|
T Consensus 10 ~ttgkvil~TT~G-----~I~iELW~kE~P~acrnFiqKOGe-----------gyy~nt~fhrlvp~f~~Qggdp-~~~g 72 (439)
T KOG0885|consen 10 PTTGKVILKTTKG-----DIDIELWAKECPKACRNFIQLCLE-----------GYYDNTEFHRLVPGFLVQGGDP-TGTG 72 (439)
T ss_pred CccceEEEEeccC-----ceeeeehhhhhhHHHHHHHHHHHh-----------ccccCceeeeeccchhcccCCC-CCCC
Confidence 3566899999988 999999999999999999999954 5999999999999999999998 6899
Q ss_pred CCCccccCCcccCC-CCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEE-cCHHHHHHHHhcCCC-C
Q 006501 84 TGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQVGTG-D 160 (643)
Q Consensus 84 ~gg~si~g~~~~dE-~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVI-eGmdVLdkIe~vpt~-~ 160 (643)
+||++|||.+|.+| +..|.++.+|+|+||+.+.+.|||||||||++.++|+++|||||+|+ +-++.+-+|..+.++ +
T Consensus 73 tGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~ 152 (439)
T KOG0885|consen 73 TGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDAD 152 (439)
T ss_pred CCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccc
Confidence 99999999999999 66799999999999999999999999999999999999999999999 689999999999988 6
Q ss_pred CCccCCeEeceeeeccccc
Q 006501 161 GKPAQPVKIIDCGEFSESK 179 (643)
Q Consensus 161 gkP~~~I~I~~cg~L~d~~ 179 (643)
.+|+.+.+|+.|.+|.+++
T Consensus 153 ~Rp~~p~kI~s~EV~~npF 171 (439)
T KOG0885|consen 153 DRPVDPPKIKSVEVLINPF 171 (439)
T ss_pred cCCCCccceeeeEeecCch
Confidence 7999999999999988875
No 20
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-37 Score=327.25 Aligned_cols=151 Identities=49% Similarity=0.760 Sum_probs=141.9
Q ss_pred CeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCC
Q 006501 7 PLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGG 86 (643)
Q Consensus 7 P~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg 86 (643)
.-+.|+|+.| +|.|.||+++||+||+||...|. .|||+|.+|||||++||||+||+ .++|+||
T Consensus 405 ~~aiihtt~g-----di~~kl~p~ecpktvenf~th~r-----------ngyy~~~~fhriik~fmiqtgdp-~g~gtgg 467 (558)
T KOG0882|consen 405 KAAIIHTTQG-----DIHIKLYPEECPKTVENFTTHSR-----------NGYYDNHTFHRIIKGFMIQTGDP-LGDGTGG 467 (558)
T ss_pred cceEEEeccc-----ceEEEecccccchhhhhhhcccc-----------CccccCcchHHhhhhheeecCCC-CCCCCCC
Confidence 3467888877 99999999999999999999994 45999999999999999999998 5999999
Q ss_pred ccccCCcccCC-CCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCcc
Q 006501 87 ESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPA 164 (643)
Q Consensus 87 ~si~g~~~~dE-~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~-~gkP~ 164 (643)
++|||..|+|| ...|.|+.+.+|+|||+|+|+||||||||+-+.||||++|||||+|+.|||||+.|+++.|+ .++|.
T Consensus 468 esiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~ 547 (558)
T KOG0882|consen 468 ESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPY 547 (558)
T ss_pred cccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCC
Confidence 99999999999 56799999999999999999999999999999999999999999999999999999999997 78999
Q ss_pred CCeEeceeee
Q 006501 165 QPVKIIDCGE 174 (643)
Q Consensus 165 ~~I~I~~cg~ 174 (643)
++|.|+++.+
T Consensus 548 e~v~iinisv 557 (558)
T KOG0882|consen 548 EDVKIINISV 557 (558)
T ss_pred CceeEEEEec
Confidence 9999999854
No 21
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-37 Score=277.19 Aligned_cols=155 Identities=48% Similarity=0.752 Sum_probs=143.4
Q ss_pred eEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCc
Q 006501 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (643)
Q Consensus 8 ~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~ 87 (643)
-|.|.|.+| +|.||||.+.+|+||+||+.||. ..||++|.||+-+++||||+|++ +..|.|+.
T Consensus 2 svtlht~~g-----dikiev~~e~tpktce~~l~~~~-----------~~~~n~~~~~~~~~~f~v~~~~~-~~tgrgg~ 64 (161)
T KOG0884|consen 2 SVTLHTDVG-----DIKIEVFCERTPKTCENFLALCA-----------SDYYNGCIFHRNIKGFMVQTGDP-THTGRGGN 64 (161)
T ss_pred eEEEeeccC-----cEEEEEEecCChhHHHHHHHHhh-----------hhhccceeecCCCCCcEEEeCCC-CCCCCCCc
Confidence 367788777 99999999999999999999994 34999999999999999999997 57789999
Q ss_pred cccCCcccCCC-CCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCC--CCcc
Q 006501 88 SIYGGKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGD--GKPA 164 (643)
Q Consensus 88 si~g~~~~dE~-~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~~--gkP~ 164 (643)
+|||.+|+||. ..|+|+.+|+|+|||.|||+|++|||||.+.++|||-+|||||+||+|+|+|++|+.+++++ .+|+
T Consensus 65 siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl 144 (161)
T KOG0884|consen 65 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPL 144 (161)
T ss_pred cccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccc
Confidence 99999999995 45999999999999999999999999999999999999999999999999999999999984 5899
Q ss_pred CCeEeceeeeccccc
Q 006501 165 QPVKIIDCGEFSESK 179 (643)
Q Consensus 165 ~~I~I~~cg~L~d~~ 179 (643)
.++.|.++.+-.+|+
T Consensus 145 ~~~~ik~itihanp~ 159 (161)
T KOG0884|consen 145 NDVHIKDITIHANPF 159 (161)
T ss_pred hheeeeeeEEecCcC
Confidence 999999998877664
No 22
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=7.2e-36 Score=288.44 Aligned_cols=148 Identities=35% Similarity=0.565 Sum_probs=125.6
Q ss_pred eEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCc
Q 006501 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (643)
Q Consensus 8 ~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~ 87 (643)
+|.|+|+.| +|+|+||.++||+||+||+.||+. +||+++.||||+++||||||++..+.+.
T Consensus 1 ~v~~~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~~-----------g~Yd~~~fhRvi~~f~iQgGd~~~~~~~--- 61 (164)
T PRK10791 1 MVTFHTNHG-----DIVIKTFDDKAPETVKNFLDYCRE-----------GFYNNTIFHRVINGFMIQGGGFEPGMKQ--- 61 (164)
T ss_pred CEEEEEccc-----cEEEEEeCCCCcHHHHHHHHHHhc-----------CCcCCcEEEEEecCcEEEeCCcCCCCCc---
Confidence 367888777 999999999999999999999954 5999999999999999999997544322
Q ss_pred cccCCcccCCCCCCCCCCCceEeecccC-CCCCCceEEEEeccCccCC-------C-CceEEEEEEcCHHHHHHHHhcCC
Q 006501 88 SIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFFITFRRQHHLD-------G-KHVVFGKVVKGLNIVKKIEQVGT 158 (643)
Q Consensus 88 si~g~~~~dE~~~l~h~~rGlLSma~~g-~ns~gSqFFITL~~~p~LD-------g-kytVFGrVIeGmdVLdkIe~vpt 158 (643)
..++..|.+|.....++.+|+|+||+.+ +++++|||||||.++++|| + +|+|||+|++|||||++|+++++
T Consensus 62 ~~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~ 141 (164)
T PRK10791 62 KATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVAT 141 (164)
T ss_pred CCCCCCcCCcccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcC
Confidence 2245677777544444579999999875 8999999999999988876 2 69999999999999999999998
Q ss_pred CC-----CCccCCeEeceeee
Q 006501 159 GD-----GKPAQPVKIIDCGE 174 (643)
Q Consensus 159 ~~-----gkP~~~I~I~~cg~ 174 (643)
+. +.|+.+|+|..|.+
T Consensus 142 ~~~~~~~~~P~~~v~I~~~~i 162 (164)
T PRK10791 142 GRSGMHQDVPKEDVIIESVTV 162 (164)
T ss_pred CCCCccCCCcCCCeEEEEEEE
Confidence 64 58999999999965
No 23
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-37 Score=294.90 Aligned_cols=163 Identities=66% Similarity=1.153 Sum_probs=156.8
Q ss_pred CCCeEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEE---EecCceEEecCCCCC
Q 006501 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHR---IIKGFMIQGGDFSKG 81 (643)
Q Consensus 5 ~nP~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhR---IipgfvIQgGd~~~~ 81 (643)
.||.||||++++++++|+++|+||.+..|+|++||..||+|+++++ |++..||+ ++++||+||||++..
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~h 73 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTCH 73 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCccccc
Confidence 5899999999999999999999999999999999999999988766 99999999 345799999999999
Q ss_pred CCCCCccccCCcccCCCCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCCC
Q 006501 82 NGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDG 161 (643)
Q Consensus 82 ~g~gg~si~g~~~~dE~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~~g 161 (643)
+++++.+||+++|.||++.|+|..+|+|+|||.|+|+|++||||+++...|||++|+|||+|++||+||++|+..+..++
T Consensus 74 ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~g 153 (167)
T KOG0865|consen 74 NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNG 153 (167)
T ss_pred CCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCeEeceeeec
Q 006501 162 KPAQPVKIIDCGEF 175 (643)
Q Consensus 162 kP~~~I~I~~cg~L 175 (643)
++...|.|.+||+|
T Consensus 154 k~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 154 KTSKKITIADCGQL 167 (167)
T ss_pred cccccEEEecCCcC
Confidence 99999999999975
No 24
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.9e-35 Score=280.71 Aligned_cols=142 Identities=36% Similarity=0.533 Sum_probs=120.8
Q ss_pred EEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCcccc
Q 006501 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (643)
Q Consensus 11 ~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~si~ 90 (643)
|+|++| +|+||||.++||+||+||++||+ .+||+++.||||+++||||||++....+. ..+
T Consensus 2 l~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~-----------~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~ 62 (155)
T cd01920 2 FQTSLG-----DIVVELYDDKAPITVENFLAYVR-----------KGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KET 62 (155)
T ss_pred cEecce-----eEEEEEeCCCCcHHHHHHHHHHh-----------cCCCCCCEEEEEeCCcEEEeCCCCCCCCc---ccc
Confidence 556655 99999999999999999999994 45999999999999999999997644322 234
Q ss_pred CCcccCCCCCCCCCCCceEeecccC-CCCCCceEEEEeccCccCCC-----CceEEEEEEcCHHHHHHHHhcCCCC----
Q 006501 91 GGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFFITFRRQHHLDG-----KHVVFGKVVKGLNIVKKIEQVGTGD---- 160 (643)
Q Consensus 91 g~~~~dE~~~l~h~~rGlLSma~~g-~ns~gSqFFITL~~~p~LDg-----kytVFGrVIeGmdVLdkIe~vpt~~---- 160 (643)
+..|.+|.....|+.+|+|+||+.+ +++++|||||||+++++||+ +|+|||+|++|||||++|+.+++++
T Consensus 63 ~~~~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~ 142 (155)
T cd01920 63 LKPIKNEAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSY 142 (155)
T ss_pred CCcccCcccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCc
Confidence 5677777665667789999999865 79999999999999999995 7999999999999999999999874
Q ss_pred -CCccCCeEece
Q 006501 161 -GKPAQPVKIID 171 (643)
Q Consensus 161 -gkP~~~I~I~~ 171 (643)
+.|+.+|+|..
T Consensus 143 ~~~p~~~v~i~~ 154 (155)
T cd01920 143 QDVPVQDVIIES 154 (155)
T ss_pred CCCcCCCeEEEE
Confidence 47888888765
No 25
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=2e-34 Score=273.19 Aligned_cols=151 Identities=50% Similarity=0.825 Sum_probs=130.1
Q ss_pred EEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCc-c
Q 006501 10 FLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE-S 88 (643)
Q Consensus 10 ~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~-s 88 (643)
||++++++ +|+|+||||.++||++|+||++||+.+ +|+|+.||+|+++++||||++......+.. .
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~ 67 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG-----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS 67 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT-----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc-----------ccCCceeecccccceeeeeeccCCCCcccccc
Confidence 78888866 899999999999999999999999643 899999999999999999998654432211 2
Q ss_pred ccCCcccCCCC-CCCCCCCceEeecccC--CCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCCCCccC
Q 006501 89 IYGGKFTDENF-KLDHNGPGILSMANSG--ANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKPAQ 165 (643)
Q Consensus 89 i~g~~~~dE~~-~l~h~~rGlLSma~~g--~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~~gkP~~ 165 (643)
..+..+++|.. .+.++.+|+|+|++.+ ++++++||||+|.++++||++|+|||+|++||+||++|+.+++++ +|.+
T Consensus 68 ~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~ 146 (155)
T PF00160_consen 68 TGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQ 146 (155)
T ss_dssp TTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSS
T ss_pred cCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCC
Confidence 23446888863 3444489999999876 788999999999999999999999999999999999999999888 9999
Q ss_pred CeEeceeee
Q 006501 166 PVKIIDCGE 174 (643)
Q Consensus 166 ~I~I~~cg~ 174 (643)
+|+|.+|++
T Consensus 147 ~v~I~~cgv 155 (155)
T PF00160_consen 147 DVTISSCGV 155 (155)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEeEC
Confidence 999999986
No 26
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=8.2e-34 Score=266.73 Aligned_cols=144 Identities=58% Similarity=0.914 Sum_probs=127.9
Q ss_pred EEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCccc
Q 006501 10 FLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESI 89 (643)
Q Consensus 10 ~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~si 89 (643)
+|+|++| +|+||||.++||++|+||+.||+++ ||++|.||||+++|+||||++......+ ..
T Consensus 1 ~~~T~~G-----~i~IeL~~~~~P~~~~nF~~l~~~~-----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~ 62 (146)
T cd00317 1 TLDTTKG-----RIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SG 62 (146)
T ss_pred CeEeccC-----cEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--Cc
Confidence 4667765 9999999999999999999999654 8999999999999999999986544322 45
Q ss_pred cCCcccCCCCCCC-CCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCccCCe
Q 006501 90 YGGKFTDENFKLD-HNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPV 167 (643)
Q Consensus 90 ~g~~~~dE~~~l~-h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~-~gkP~~~I 167 (643)
++..|++|..... |+.+|+|+|++.+++++++||||+|.++++||++|+|||+|++||+||++|+.++++ ++.|+.+|
T Consensus 63 ~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i 142 (146)
T cd00317 63 PGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPV 142 (146)
T ss_pred CCCccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCce
Confidence 6778888876655 889999999999999999999999999999999999999999999999999999997 78999999
Q ss_pred Eece
Q 006501 168 KIID 171 (643)
Q Consensus 168 ~I~~ 171 (643)
+|..
T Consensus 143 ~I~~ 146 (146)
T cd00317 143 TISD 146 (146)
T ss_pred EEeC
Confidence 9963
No 27
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-34 Score=297.92 Aligned_cols=157 Identities=38% Similarity=0.635 Sum_probs=144.3
Q ss_pred eEEEEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCc
Q 006501 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (643)
Q Consensus 8 ~V~~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~ 87 (643)
-|+|+|++| +|||+||.+++|.||.|||.|| +..||+.|.||.|..+|++|.||+ +++|.||.
T Consensus 2 sVlieTtlG-----DlvIDLf~~erP~~clNFLKLC-----------k~KYYN~clfh~vq~~f~aQTGDP-tGtG~GG~ 64 (479)
T KOG0415|consen 2 SVLIETTLG-----DLVIDLFVKERPRTCLNFLKLC-----------KIKYYNFCLFHTVQRDFTAQTGDP-TGTGDGGE 64 (479)
T ss_pred cEEEEeecc-----cEEeeeecccCcHHHHHHHHHH-----------hHhhcccceeeeccccceeecCCC-CCCCCCcc
Confidence 489999988 9999999999999999999999 677999999999999999999998 47999999
Q ss_pred cccCCc-------ccCC-CCCCCCCCCceEeecccCCCCCCceEEEEeccC-ccCCCCceEEEEEEcCHHHHHHHHhcCC
Q 006501 88 SIYGGK-------FTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQ-HHLDGKHVVFGKVVKGLNIVKKIEQVGT 158 (643)
Q Consensus 88 si~g~~-------~~dE-~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~-p~LDgkytVFGrVIeGmdVLdkIe~vpt 158 (643)
+||+.- |+.| ++.|+|...|+|+|+++|.|.+||||||||+++ ..||++|+|||+|++|||+|.+|+.+-+
T Consensus 65 si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~v 144 (479)
T KOG0415|consen 65 SIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIV 144 (479)
T ss_pred eeeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhc
Confidence 998743 4555 577999999999999999999999999999876 8999999999999999999999998877
Q ss_pred C-CCCccCCeEeceeeeccccccc
Q 006501 159 G-DGKPAQPVKIIDCGEFSESKIQ 181 (643)
Q Consensus 159 ~-~gkP~~~I~I~~cg~L~d~~~k 181 (643)
+ +++|+++|.|.+..+|.+|+-.
T Consensus 145 D~~~rPykdIRI~HTiiLdDPFdd 168 (479)
T KOG0415|consen 145 DPKNRPYKDIRIKHTIILDDPFDD 168 (479)
T ss_pred CCCCCcccceeeeeeEEecCCCCC
Confidence 7 7899999999999999998643
No 28
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=1e-32 Score=269.37 Aligned_cols=126 Identities=36% Similarity=0.543 Sum_probs=107.4
Q ss_pred eeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCC---------------
Q 006501 19 PVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG--------------- 83 (643)
Q Consensus 19 ~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g--------------- 83 (643)
..|+|+||||++.||+||+||+.||+ .+||+++.||||+++||||||++.....
T Consensus 5 ~~G~i~ieL~~~~aP~t~~NF~~L~~-----------~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~ 73 (176)
T cd01924 5 DNGTITIVLDGYNAPVTAGNFVDLVE-----------RGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPL 73 (176)
T ss_pred ccceEEEEEcCCCCCHHHHHHHHHHH-----------hCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccc
Confidence 35699999999999999999999994 5599999999999999999999853311
Q ss_pred -----CCCccccCCcc-----cCCCCCCCCCCCceEeecccC--CCCCCceEEEEec-------cCccCCCCceEEEEEE
Q 006501 84 -----TGGESIYGGKF-----TDENFKLDHNGPGILSMANSG--ANTNGSQFFITFR-------RQHHLDGKHVVFGKVV 144 (643)
Q Consensus 84 -----~gg~si~g~~~-----~dE~~~l~h~~rGlLSma~~g--~ns~gSqFFITL~-------~~p~LDgkytVFGrVI 144 (643)
..+..+|+..+ .+++..+.|+.+|+|+||+.+ +|++++||||+|. +.++||++|+|||+|+
T Consensus 74 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~Vv 153 (176)
T cd01924 74 EIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVT 153 (176)
T ss_pred eecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEe
Confidence 12234555544 245677888899999999987 6999999999998 7899999999999999
Q ss_pred cCHHHHHHHHh
Q 006501 145 KGLNIVKKIEQ 155 (643)
Q Consensus 145 eGmdVLdkIe~ 155 (643)
+|||||++|+.
T Consensus 154 eG~dvl~~I~~ 164 (176)
T cd01924 154 DGLDILRELKV 164 (176)
T ss_pred cCHHHHHhhcC
Confidence 99999999975
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.1e-05 Score=88.24 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=117.7
Q ss_pred CceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCcc--ccCC-c
Q 006501 17 GDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGES--IYGG-K 93 (643)
Q Consensus 17 G~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~s--i~g~-~ 93 (643)
|..+--|.|+||..-.|..++-|..+| ..+|+++..|.+|+..+++|.||.......+|.. +-+. +
T Consensus 108 Gd~~s~IAVs~~~sg~i~VvD~~~d~~-----------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~ 176 (558)
T KOG0882|consen 108 GDKISLIAVSLFKSGKIFVVDGFGDFC-----------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP 176 (558)
T ss_pred CCeeeeEEeecccCCCcEEECCcCCcC-----------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence 445568999999999999999999999 5679999999999999999999864333333321 1111 1
Q ss_pred --ccC--CCCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCC-CCccCCeE
Q 006501 94 --FTD--ENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGD-GKPAQPVK 168 (643)
Q Consensus 94 --~~d--E~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~vpt~~-gkP~~~I~ 168 (643)
|+. +++.++|. .-++.+........+-+|+|+-+..+.|..+..|||.|+.|-+|++.|.++.++. .+|..++.
T Consensus 177 ~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~ 255 (558)
T KOG0882|consen 177 FQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG 255 (558)
T ss_pred ccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence 222 36778886 5677777776667788999999999999999999999999999999999998874 46878888
Q ss_pred eceeeeccc
Q 006501 169 IIDCGEFSE 177 (643)
Q Consensus 169 I~~cg~L~d 177 (643)
|.++...-.
T Consensus 256 l~~VelgRR 264 (558)
T KOG0882|consen 256 LMHVELGRR 264 (558)
T ss_pred cceeehhhh
Confidence 888865433
No 30
>PRK00969 hypothetical protein; Provisional
Probab=96.65 E-value=0.0053 Score=68.85 Aligned_cols=104 Identities=21% Similarity=0.325 Sum_probs=67.1
Q ss_pred eeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCccccCCcccCCC
Q 006501 19 PVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDEN 98 (643)
Q Consensus 19 ~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~si~g~~~~dE~ 98 (643)
-+--|.|||.++ ||..|++|+.|..++. -+..|+.++ + ...+.+.|..++.||
T Consensus 202 IfTy~eve~~~~-~p~s~EH~la~~~~G~------f~Vd~~tst---------f-----------I~d~~L~g~~~p~En 254 (508)
T PRK00969 202 IFTYVEVELDPG-APKSVEHFLALLEDGT------FEVDFETST---------F-----------IADDRLQGLKIPEEN 254 (508)
T ss_pred EEEEEEEEEcCC-CCchHHHHHHHHhCCe------EEEeeeecc---------e-----------EeeccccCccCCccc
Confidence 335677888766 8999999999985441 011111111 1 112233355566666
Q ss_pred CCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHH
Q 006501 99 FKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIE 154 (643)
Q Consensus 99 ~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe 154 (643)
+... ..|+|.+.+.|.+. ...||.-.+-+.- -.|+|+|+|+.|||+|+--+
T Consensus 255 ~~~R--~~GtVTVRt~G~g~--G~vYIyredr~ss-~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 255 FEPR--RRGTVTVRTAGVGV--GKVYIYREDRPSS-LSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred cCcc--ccceEEEEeeccCc--eeEEEECCCCCCC-ccceeEEEEecceeeeeccc
Confidence 5433 47999999987543 4789988765432 24999999999999987543
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.63 E-value=0.0061 Score=68.24 Aligned_cols=105 Identities=21% Similarity=0.344 Sum_probs=67.0
Q ss_pred eeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCccccCCcccCCC
Q 006501 19 PVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDEN 98 (643)
Q Consensus 19 ~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~si~g~~~~dE~ 98 (643)
-+--+.|||..+ ||.+|++|+.+..++ +|. --...+-+| ..+.+.|..++.||
T Consensus 199 IfTy~evE~~~~-~p~s~EH~la~~~~G-----------~~~----Vd~~tsTfi-----------~d~~L~g~~~p~En 251 (503)
T TIGR03268 199 IFTYVEVELDPN-APVSVEHFLALMEDG-----------TFR----VDYRTSTFI-----------SDDSLRGLDKPEEN 251 (503)
T ss_pred EEEEEEEEEcCC-CChhHHHHHHHHhCC-----------eEE----EeeeecceE-----------ecccccCccCCccc
Confidence 335677887755 899999999998544 111 011111111 12233345566665
Q ss_pred CCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHh
Q 006501 99 FKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQ 155 (643)
Q Consensus 99 ~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~ 155 (643)
+... ..|+|.+.+.|.+. ...||...+-+.- -.|+|+|+|+.|||+|+--+.
T Consensus 252 ~~~R--~rGtVTVRn~G~G~--G~VYIYredr~ss-~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 252 IEKR--RRGAVTVRNSGVGE--GRVYIYREDRPSS-LSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred cCcc--cceeEEEEeeccCc--eeEEEEcCCCCCC-cccceeEEEecceeeeecccC
Confidence 4433 47999999887543 4789988765432 349999999999999875443
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.55 E-value=0.009 Score=66.94 Aligned_cols=114 Identities=20% Similarity=0.302 Sum_probs=69.6
Q ss_pred eEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCccccCCcccCCCCCC
Q 006501 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKL 101 (643)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~si~g~~~~dE~~~l 101 (643)
-|.|+||.+.||.+|..|..+. |-+ ..--=-..+|=.+++.++.-|+. .++..+..||..-
T Consensus 376 vi~IeLydd~AP~s~~yFRk~t-GL~--------~~~VG~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P~ 436 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFT-GLK--------TKPVGRLPVHFAFKEMIMFKGNK----------ELAKGLIPENTPE 436 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhc-CCc--------ccccceeEEEEEeCCeeEeccCc----------hhccccCCCCCCC
Confidence 5789999999999999999875 211 00011234555556644443332 2234466676666
Q ss_pred CCCCCceEeecccCCCCCCceEEEEeccCccC------CCCceEEEEEEcCHHHHHHHHh
Q 006501 102 DHNGPGILSMANSGANTNGSQFFITFRRQHHL------DGKHVVFGKVVKGLNIVKKIEQ 155 (643)
Q Consensus 102 ~h~~rGlLSma~~g~ns~gSqFFITL~~~p~L------DgkytVFGrVIeGmdVLdkIe~ 155 (643)
.....|.|+|.|...... .-.=|-|.++..+ -....|+|+|+++|+.|.+|.+
T Consensus 437 ~~V~ag~IgvTN~a~k~~-G~IGVRl~d~defGPTGE~F~gTNIiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 437 DKVEAGVIGVTNQACKHV-GMIGVRLEDSDEFGPTGEPFSGTNIIGRVVEGMERLKGLKE 495 (503)
T ss_pred CccccceEeeechhhhcC-ceEEEEccCCcccCCCCCCccCcceEEEecCChhHhccccc
Confidence 666789999887532111 1233444443222 2235678999999999988766
No 33
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=96.48 E-value=0.0085 Score=57.68 Aligned_cols=106 Identities=22% Similarity=0.305 Sum_probs=57.5
Q ss_pred eEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecC--ceEEecCCCCCCCCCCccccCCcccCCCC
Q 006501 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKG--FMIQGGDFSKGNGTGGESIYGGKFTDENF 99 (643)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipg--fvIQgGd~~~~~g~gg~si~g~~~~dE~~ 99 (643)
.++.+|+.+.||+||+.|+++. =|.+..+|-..-+ .||..+++. ...+..||.
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~L--------------P~~~~~~HarwSG~ei~~~l~~~~-----------~~~~~~EN~ 63 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEAL--------------PLKGKVIHARWSGEEIWIPLPDFD-----------PFEPGRENH 63 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--S-----------SS---S-SE
T ss_pred EEEEEEcccCChHHHHHHHHhC--------------CCCCcEEEEEEECcEEEEECCCcC-----------cCCCCCCcC
Confidence 6899999999999999999987 2777788777665 456656642 122344544
Q ss_pred CCCCCCCceEeec-ccC------CC-CCCceEEEEeccC------ccCCCCceEEEEEEcCHHHHHHHHh
Q 006501 100 KLDHNGPGILSMA-NSG------AN-TNGSQFFITFRRQ------HHLDGKHVVFGKVVKGLNIVKKIEQ 155 (643)
Q Consensus 100 ~l~h~~rGlLSma-~~g------~n-s~gSqFFITL~~~------p~LDgkytVFGrVIeGmdVLdkIe~ 155 (643)
... -.+|-|.+. ..+ +. -....+|+-.+.. -+|- -.+|++|++|+|-|.++.+
T Consensus 64 T~~-P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 64 TVT-PIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEACR 130 (147)
T ss_dssp ESS---TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHHH
T ss_pred ccc-CCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHHH
Confidence 333 346777766 000 11 1123344433222 2222 4899999999998877754
No 34
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.013 Score=63.94 Aligned_cols=106 Identities=25% Similarity=0.434 Sum_probs=70.0
Q ss_pred ceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCccccCCcccCC
Q 006501 18 DPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE 97 (643)
Q Consensus 18 ~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~si~g~~~~dE 97 (643)
..+-.|.|+|-.+ +|++|++|++|... |+.=-.+-.+-+| +.+...+.+++.|
T Consensus 200 rifTy~eve~s~n-sP~saEH~lalmed---------------G~lri~~~tntfi-----------s~~~lq~~~~~~e 252 (512)
T COG4070 200 RIFTYFEVELSRN-SPKSAEHFLALMED---------------GTLRIDVTTNTFI-----------SDDTLQEEKVPEE 252 (512)
T ss_pred EEEEEEEEEeCCC-CchhHHHHHHHhhc---------------ceEEEEEecccee-----------eccccccccCChh
Confidence 4446788888876 79999999999843 2222222222222 2223345566777
Q ss_pred CCCCCCCCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHh
Q 006501 98 NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQ 155 (643)
Q Consensus 98 ~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkIe~ 155 (643)
|+.+.. +|+|++.|.|-+. ...||.-.+-+.. -.|+|+|+|++||++|+-.+.
T Consensus 253 n~d~Re--rG~iTvRn~Gvge--GrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 253 NFDLRE--RGAITVRNVGVGE--GRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred hhhhhh--cceEEEEeeeccc--ceEEEEecCCCCc-cccceeeeeecceEEEEeccc
Confidence 766554 7999999876543 4788887664332 248999999999999876544
No 35
>PRK00969 hypothetical protein; Provisional
Probab=96.20 E-value=0.027 Score=63.42 Aligned_cols=113 Identities=22% Similarity=0.265 Sum_probs=70.1
Q ss_pred eEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCccccCCcccCCCCCC
Q 006501 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKL 101 (643)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~si~g~~~~dE~~~l 101 (643)
-|.|+||.+.||.||.-|..+. |-. ..--=-..+|=+.++.++.-|+. .+...+..||..-
T Consensus 379 vi~IeLydd~AP~s~~yFR~~t-GL~--------~~~VG~L~v~F~~~d~~lFk~~~----------~~~k~liPEN~P~ 439 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVT-GLK--------TKPVGKLPVYFKYEDTYLFKGNI----------EYAKGLLPENTPE 439 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhc-CCc--------ccccceeEEEEEeCCeEEEccCh----------hhccccCCCCCCC
Confidence 5789999999999999999876 211 00011234555566655554443 2234566677666
Q ss_pred CCCCCceEeecccCCCCCCceEEEEeccCccC------CCCceEEEEEEcCHHHHHHHHh
Q 006501 102 DHNGPGILSMANSGANTNGSQFFITFRRQHHL------DGKHVVFGKVVKGLNIVKKIEQ 155 (643)
Q Consensus 102 ~h~~rGlLSma~~g~ns~gSqFFITL~~~p~L------DgkytVFGrVIeGmdVLdkIe~ 155 (643)
.....|.|+|.|...... .-.=|-|.++..+ -....|+|+|+ +++.|.+|.+
T Consensus 440 ~~V~ag~IgvTN~a~k~~-G~iGVR~~d~d~fGPTGE~F~gTNIIGrVv-~~e~Lk~lKe 497 (508)
T PRK00969 440 DKVKAGEIGVTNMAAKYK-GMIGVRLSDNDEFGPTGEPFEGTNIIGRVV-NLEKLKKLKE 497 (508)
T ss_pred CccccceEeeechhhhcC-ceEEEEccCCcccCCCCCCccCceeEEEec-ChHHhccccc
Confidence 667789999887532111 1233444443222 23367889999 9999888766
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.037 Score=60.46 Aligned_cols=114 Identities=21% Similarity=0.283 Sum_probs=65.2
Q ss_pred eEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCc--eEEecCCCCCCCCCCccccCCcccCCCC
Q 006501 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGF--MIQGGDFSKGNGTGGESIYGGKFTDENF 99 (643)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgf--vIQgGd~~~~~g~gg~si~g~~~~dE~~ 99 (643)
-|+||||.+.||.+|..|..+. |-. .++ --...+|-+.++. ++.-|+. .++..+..||.
T Consensus 377 iieIELyed~APrSv~yFRr~t-~l~------~kp--VGkL~Vhfay~d~~~vmfegn~----------~~~K~llPEN~ 437 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST-GLK------TKP--VGKLKVHFAYDDTYLVMFEGNA----------VLAKGLLPENT 437 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc-ccc------ccc--ccceEEEEEeCCceEEEEcCCh----------HHhccCCCCCC
Confidence 5889999999999999999875 211 010 1123455555552 2222322 22344555665
Q ss_pred CCCCCCCceEeecccCCCCCCceEEEEeccCccC------CCCceEEEEEEcCHHHHHHHHh
Q 006501 100 KLDHNGPGILSMANSGANTNGSQFFITFRRQHHL------DGKHVVFGKVVKGLNIVKKIEQ 155 (643)
Q Consensus 100 ~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p~L------DgkytVFGrVIeGmdVLdkIe~ 155 (643)
.-....+|.|++.|...-.. ...-+-|.++..+ -....++|+|++|.+-|..|.+
T Consensus 438 P~d~Ve~g~iGvTN~a~r~~-GmIGVRL~dsdefGPTGE~Fe~TNiIGrIveg~e~l~~ike 498 (512)
T COG4070 438 PADTVEAGEIGVTNQAARHM-GMIGVRLEDSDEFGPTGEKFEGTNIIGRIVEGPERLIGIKE 498 (512)
T ss_pred chhheecccccccccchhcc-ceeEEEeccccccCCCCCccccceeehhhccChHHhccccc
Confidence 55555566666554321111 1233444443222 2346789999999999988877
No 37
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=95.44 E-value=0.034 Score=53.36 Aligned_cols=15 Identities=67% Similarity=0.565 Sum_probs=5.9
Q ss_pred CCCCCCccccCCCCC
Q 006501 295 SRSSSDSESLSSSGS 309 (643)
Q Consensus 295 s~S~s~~~s~s~~~~ 309 (643)
+.|++|+++.+++++
T Consensus 142 SsSssdSdS~s~s~s 156 (177)
T KOG3116|consen 142 SSSSSDSDSESASDS 156 (177)
T ss_pred cCCCCcccccccccc
Confidence 333344444333333
No 38
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.015 Score=59.93 Aligned_cols=13 Identities=38% Similarity=0.619 Sum_probs=7.6
Q ss_pred cchhhhhcccccc
Q 006501 280 DGHREKRRSQRDK 292 (643)
Q Consensus 280 ~~rr~kr~skr~~ 292 (643)
++++.||+.+..-
T Consensus 273 ~~~r~krr~~~a~ 285 (306)
T KOG2985|consen 273 DDRRQKRRNKVAA 285 (306)
T ss_pred hHHHHHHhhcccc
Confidence 5566666666553
No 39
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=93.04 E-value=0.27 Score=45.80 Aligned_cols=103 Identities=20% Similarity=0.276 Sum_probs=55.6
Q ss_pred EEEEeCCceeeeEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCcccc
Q 006501 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (643)
Q Consensus 11 ~DtsiGG~~~GrIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~si~ 90 (643)
|.|++|+. .|.++|+.. .|+..|++++ +.+.....|-+-.++.+ +
T Consensus 3 I~i~i~~~---~~~a~L~d~---~ta~~~~~~L-------Plt~~~~~~g~E~y~~~-p--------------------- 47 (120)
T PF04126_consen 3 IKITIGGQ---EIEAELNDS---PTARAFAAQL-------PLTVTMNDWGNEKYFSL-P--------------------- 47 (120)
T ss_dssp EEEEETTE---EEEEEEETT---HHHHHHHHC--------SEEEEEEECTTEEEEE--S---------------------
T ss_pred EEEEECCE---EEEEEECCC---HHHHHHHHhC-------CeEEEHHHCCceEEEeC-C---------------------
Confidence 56677753 799999987 7999999987 22222222322111111 1
Q ss_pred CCccc-CCCCCCCCCCCceEeecccCCCCCCceEEEEeccCc-------cCCCCceEEEEEEcCHHHHHHHHh
Q 006501 91 GGKFT-DENFKLDHNGPGILSMANSGANTNGSQFFITFRRQH-------HLDGKHVVFGKVVKGLNIVKKIEQ 155 (643)
Q Consensus 91 g~~~~-dE~~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~p-------~LDgkytVFGrVIeGmdVLdkIe~ 155 (643)
..+. ++... .....|-|+....+ ..|.|-+++.| .+-...++||+|+.|+++|..|..
T Consensus 48 -~~l~~~~~~~-~~~~~GDi~Yw~pg-----~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 48 -LKLPTEENPR-SSVEAGDIAYWPPG-----GALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp ------SSSEE-SSB-TTEEEEECCC-----TEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred -CCCCcccCcc-ccccCceEEEeCCC-----CEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 0111 12222 22357888876433 35777777764 455668999999999999888754
No 40
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=84.47 E-value=0.41 Score=49.01 Aligned_cols=10 Identities=10% Similarity=0.431 Sum_probs=3.9
Q ss_pred CCcchhhhcc
Q 006501 253 SSSSGDRRRR 262 (643)
Q Consensus 253 s~~~~~~r~~ 262 (643)
++....++++
T Consensus 81 ~~~k~kkkkk 90 (225)
T PF10500_consen 81 SKEKRKKKKK 90 (225)
T ss_pred cchhhhhhhh
Confidence 3333344433
No 41
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=82.86 E-value=20 Score=41.30 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=17.0
Q ss_pred CCCCCCceEeeccc---CCCCCCceEEEEeccC
Q 006501 101 LDHNGPGILSMANS---GANTNGSQFFITFRRQ 130 (643)
Q Consensus 101 l~h~~rGlLSma~~---g~ns~gSqFFITL~~~ 130 (643)
+.|..--.|-|++. +..+..-.|-|+|...
T Consensus 371 I~f~EIS~V~fsR~~~s~t~trtFD~ei~lk~g 403 (615)
T KOG0526|consen 371 IRFEEISSVNFSRSGLSGTSTRTFDFEITLKSG 403 (615)
T ss_pred eeccceeeEEEEeccCCccceeeEEEEEEEcCC
Confidence 44444445555554 3455566788888544
No 42
>PHA03001 putative virion core protein; Provisional
Probab=71.05 E-value=13 Score=35.40 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=36.9
Q ss_pred eEEEEEEeCCceeeeEEEEecCCCChh------hHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecC
Q 006501 8 LVFLDVSIDGDPVEKIVIELFADVVPK------TAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKG 70 (643)
Q Consensus 8 ~V~~DtsiGG~~~GrIvIELf~d~APk------tv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipg 70 (643)
-|||++..|.. +|.+++-+..||. ++++||++.. |-..-+.+.|+=+|++
T Consensus 5 NIfLEsd~grv---kl~~~~~~~~~~~~~~~~ka~~~fl~~L~----------kYi~v~eStFylvvrd 60 (132)
T PHA03001 5 NIFLETDAGRV---KLAIENPDKVCATKAEMRKAINKFLELLK----------KYIHVDKSTFYLVVKD 60 (132)
T ss_pred EEEEeccCCce---EEEEcCCCccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEec
Confidence 37888887732 4666666666665 7889999883 4556788999999987
No 43
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=69.34 E-value=2.9 Score=47.95 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=12.6
Q ss_pred CCCCceEEEEeccCccCCCCceEEEE
Q 006501 117 NTNGSQFFITFRRQHHLDGKHVVFGK 142 (643)
Q Consensus 117 ns~gSqFFITL~~~p~LDgkytVFGr 142 (643)
|...+.|-|+| ||.||-
T Consensus 619 np~n~RfsINf---------FTsIGL 635 (739)
T KOG2140|consen 619 NPRNTRFSINF---------FTSIGL 635 (739)
T ss_pred Ccccceeeeeh---------hhhhcc
Confidence 66778899988 676654
No 44
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=58.20 E-value=15 Score=33.76 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=24.0
Q ss_pred EEEEeccCccCCCC------ceEEEEEEcCHHHHHHHHh
Q 006501 123 FFITFRRQHHLDGK------HVVFGKVVKGLNIVKKIEQ 155 (643)
Q Consensus 123 FFITL~~~p~LDgk------ytVFGrVIeGmdVLdkIe~ 155 (643)
++|.|+..|.-|.+ ..|+|+|+++|+.|..|..
T Consensus 79 lClFFGkTpmsddkiqPaSaVNvIGrIv~~lE~lk~v~d 117 (126)
T COG2164 79 LCLFFGKTPMSDDKIQPASAVNVIGRIVKNLELLKSVDD 117 (126)
T ss_pred EEEEecCCcCcccccCccchHHHHHHHHhhHHhhhcccC
Confidence 44555666666654 4689999999999888754
No 45
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=55.75 E-value=41 Score=32.03 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=33.1
Q ss_pred eEEEEEEeCCceeeeEEEEecCCCChh-------hHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecC
Q 006501 8 LVFLDVSIDGDPVEKIVIELFADVVPK-------TAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKG 70 (643)
Q Consensus 8 ~V~~DtsiGG~~~GrIvIELf~d~APk-------tv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipg 70 (643)
-|||++..|.. +|.+++-...||. +++.||+... +-..-+-+.|+=+|++
T Consensus 5 NIfLEsd~grv---kl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~----------kyI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLESDSGRV---KLRYEEPDCKCARTGCEARRAVKHFLSVLK----------KYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEeccCcee---EEEEeCCCcccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEec
Confidence 37888887721 3444444433333 6889999873 3445688999999887
No 46
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=51.86 E-value=4.6 Score=44.61 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=10.9
Q ss_pred CCChhhHHHHHHhhcCC
Q 006501 30 DVVPKTAENFRALCTGE 46 (643)
Q Consensus 30 d~APktv~NFl~Lctg~ 46 (643)
+|++.+-+-|-.||.+.
T Consensus 94 ewq~~~eapRE~~ak~~ 110 (453)
T KOG3794|consen 94 EWQRKYEAPREKLAKAP 110 (453)
T ss_pred cccccccccHHHHhcCC
Confidence 35666666677777554
No 47
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.70 E-value=15 Score=41.51 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=16.1
Q ss_pred CCCceEEEEeccCccCCCCceEEEEEEcCHHHH
Q 006501 118 TNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIV 150 (643)
Q Consensus 118 s~gSqFFITL~~~p~LDgkytVFGrVIeGmdVL 150 (643)
..+|-|||.- -..|---|-|||.|-.=++||
T Consensus 234 de~Svlf~ed--R~~lG~I~EiFGpV~~P~Yvv 264 (483)
T KOG2236|consen 234 DEDSVLFLED--RTALGQIFEIFGPVKNPYYVV 264 (483)
T ss_pred cccceEEeec--cccchhhhhhhcccCCceEEE
Confidence 3455555543 223333466777775555543
No 48
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.90 E-value=10 Score=42.36 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=7.2
Q ss_pred CccccCCcccCCCCC
Q 006501 86 GESIYGGKFTDENFK 100 (643)
Q Consensus 86 g~si~g~~~~dE~~~ 100 (643)
.+.+.|..|.++.+.
T Consensus 83 EeyllGrk~~ke~~~ 97 (450)
T KOG3869|consen 83 EEYLLGRKILKESFE 97 (450)
T ss_pred ccccccchhHHHHHH
Confidence 334445555555433
No 49
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=30.91 E-value=22 Score=37.56 Aligned_cols=49 Identities=33% Similarity=0.540 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhhcccCCCcccccccccc
Q 006501 227 SSDSSGSDSYSSESDSDTDSESSPSESSSSGDRRRRKRKPVKRGKRERGR 276 (643)
Q Consensus 227 ss~s~ds~~~~s~s~sds~s~~~s~~s~~~~~~r~~~~~~~k~~k~~~~k 276 (643)
.+++.+++.+++|+|+|+++++....- ..-..++++.++..++|+|+.+
T Consensus 235 ~~~~~~~~~s~~d~d~e~esd~de~Ee-~K~~~k~kk~~~~~k~kkk~~r 283 (303)
T KOG3064|consen 235 DDDSDESDDSDEDSDSEDESDSDEIEE-NKKESKKKKGKKAAKGKKKRPR 283 (303)
T ss_pred cchhhhhhhcccccccccCCchhhHHH-hhhhhhhcccCCCccccccCCc
No 50
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=29.33 E-value=1.2e+02 Score=29.50 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=49.1
Q ss_pred eEEEEecCCCChh-hHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCCCCCCCCCCccccCCcccCCCCC
Q 006501 22 KIVIELFADVVPK-TAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFK 100 (643)
Q Consensus 22 rIvIELf~d~APk-tv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~~~~~g~gg~si~g~~~~dE~~~ 100 (643)
++.|=|..+.++. .+..+++-| |+.|..+ +|||+|...-..... .+ .+|.++.|
T Consensus 3 ~~~FY~l~~~~~~~~~c~L~~k~--------------~~~G~rv-------lI~~~d~~q~e~LD~-~L--Wt~~~~sF- 57 (144)
T COG2927 3 EATFYLLSESTLLAAACRLAEKA--------------WRSGWRV-------LIQCEDEAQAEALDE-HL--WTFSAESF- 57 (144)
T ss_pred eeEEEEecchhHHHHHHHHHHHH--------------HHcCCeE-------EEEeCCHHHHHHHHH-hh--hccchhcc-
Confidence 4556666666666 566666666 4566554 888887421100000 01 12333321
Q ss_pred CCC---------CCCceEeecccCCCCCCceEEEEeccCccCCCCceEE-EEEEcC
Q 006501 101 LDH---------NGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVF-GKVVKG 146 (643)
Q Consensus 101 l~h---------~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVF-GrVIeG 146 (643)
+.| ..+=+|++....+|.+.-.|.|.|.+.... . ...| -+|+++
T Consensus 58 iPH~~~~e~~~~~qPIli~~~~~~pn~~~~~~lInl~d~~~~-~-~~~~~~~v~d~ 111 (144)
T COG2927 58 IPHNLAGEPPPAGQPILIAWPGGNPNSARVDLLINLADEFPD-F-AYEFVTRVFDF 111 (144)
T ss_pred cCCccCCCCCCCCCCEEEEcCCCCCCCCceeEEEeccccCCC-c-cceEEEEEeec
Confidence 222 233234443334455555799999766332 1 3344 677776
No 51
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=29.23 E-value=30 Score=38.22 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=34.7
Q ss_pred CCCceEeecccCCCCCCceEEEEeccCccCCCCceEEEEEE-cCHHHHHHHHh
Q 006501 104 NGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQ 155 (643)
Q Consensus 104 ~~rGlLSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVI-eGmdVLdkIe~ 155 (643)
-..|.|.+.|......-.+.-|++.+.|. |....|+|+|+ +-|.+|+-|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 45899999987666667799999999886 88899999999 57888888864
No 52
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=26.90 E-value=17 Score=35.71 Aligned_cols=73 Identities=22% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCCCccCCeEeceeeecccccccchhhhhhhhcccccCCCCCCCcchhhhcccchhHHHHhhccccCCCCC
Q 006501 150 VKKIEQVGTGDGKPAQPVKIIDCGEFSESKIQDGKEKVKKKKASHVSSSEDSSDGETVRRHKKSSKKRRQKRKRRYPSSD 229 (643)
Q Consensus 150 LdkIe~vpt~~gkP~~~I~I~~cg~L~d~~~k~~keK~KKkks~~~sssed~sd~e~k~~~k~~~k~~k~k~~~~~~ss~ 229 (643)
+..++.+++.+-..-.++.|-. ....+-+++...+...+.++. +.++|.||.+|++|++.+..+.+++
T Consensus 40 ~~~~e~ipv~~idl~vpL~Vpg-~~~sdkYl~~~~~~~~~~~~~-----------k~kKK~KKkkKkkKk~~k~~~~~ss 107 (154)
T PF06375_consen 40 YENVEDIPVAEIDLSVPLKVPG-LKGSDKYLKQQQERRESQKSK-----------KKKKKKKKKKKKKKKSKKRHYSESS 107 (154)
T ss_dssp ----TTS-EEE---SS----SS-SSS-SSEEESST---------------------------------------------
T ss_pred CcccccCcccccccCCCeeeCC-cchhHHHHHHHHhhhhhhhhh-----------hhhhhccchhcccccCCCCCCCCCC
Q ss_pred CCCCC
Q 006501 230 SSGSD 234 (643)
Q Consensus 230 s~ds~ 234 (643)
++|.|
T Consensus 108 e~~ed 112 (154)
T PF06375_consen 108 ESDED 112 (154)
T ss_dssp -----
T ss_pred ccccc
No 53
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=26.39 E-value=2e+02 Score=30.25 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=29.9
Q ss_pred EEEEEEeCCceee-eEEEEecCCCChhhHHHHHHhhc
Q 006501 9 VFLDVSIDGDPVE-KIVIELFADVVPKTAENFRALCT 44 (643)
Q Consensus 9 V~~DtsiGG~~~G-rIvIELf~d~APktv~NFl~Lct 44 (643)
=+++|+.-+.++| ..||.+++..||..|.-|++|+-
T Consensus 71 h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLlG 107 (242)
T KOG3953|consen 71 HAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALLG 107 (242)
T ss_pred eEEEEEecCCccCCcceEEEEcccCchhhhHHHHHhC
Confidence 3566776666677 78999999999999999999983
No 54
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.28 E-value=33 Score=37.99 Aligned_cols=148 Identities=9% Similarity=0.107 Sum_probs=84.5
Q ss_pred eEEEEecCCCChhhHHHHHHhhcCCCCCCCCCCCCccccCCEEEEEecCceEEecCC----CCCCCC-CCccccCCcccC
Q 006501 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDF----SKGNGT-GGESIYGGKFTD 96 (643)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lctg~~g~~~~~~k~g~Y~Gt~FhRIipgfvIQgGd~----~~~~g~-gg~si~g~~~~d 96 (643)
.+++-.-.+.-|..|-.|+.-+... -.-||.++..-.|..|+++.--.+ .+|-.. ..+.|..+-++.
T Consensus 66 ~~~~~st~e~pPL~~iefL~rv~dv--------~~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~p 137 (418)
T KOG2740|consen 66 FFCAVSTVETPPLMVIEFLHRVVDV--------LLEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIPP 137 (418)
T ss_pred EEEEEEeccCCChhHHHHHHHHHHH--------HHHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcCC
Confidence 4555555677799999998866432 234888888888888875542211 011111 111111111111
Q ss_pred CC----------------CCCCCCCCceEeecccCCCCCCceEEEEeccC--ccCC-CCceEEEEEEcCHHHHHHHHhcC
Q 006501 97 EN----------------FKLDHNGPGILSMANSGANTNGSQFFITFRRQ--HHLD-GKHVVFGKVVKGLNIVKKIEQVG 157 (643)
Q Consensus 97 E~----------------~~l~h~~rGlLSma~~g~ns~gSqFFITL~~~--p~LD-gkytVFGrVIeGmdVLdkIe~vp 157 (643)
.+ -.|+..+.-+|-|..++....+.+|||-+-.. ..+| ..-+|||.|-.-||+.-+|..+|
T Consensus 138 ps~l~~~~~svTg~~n~~~~lPtg~~s~VPWR~~~~Ky~nNE~yvdvlEeidai~~k~gslv~~eI~g~vd~~~qLsgmP 217 (418)
T KOG2740|consen 138 PSFLSKKFNSVTGNSNVSDTLPTGALSNVPWRTAGVKYTNNEAYVDVLEEIDAIVDKKGSLVFGEIQGIVDVCSQLSGMP 217 (418)
T ss_pred hHHHHHHHhhhhccccccccCCCcccccccccccCcccccchhhhhhhheeheEecCCCCEEEEEEEEEEEEEEeecCCC
Confidence 10 11233333455566677666677888876321 1222 23599999988888888888776
Q ss_pred C-----CCCCccCCeEeceeeeccc
Q 006501 158 T-----GDGKPAQPVKIIDCGEFSE 177 (643)
Q Consensus 158 t-----~~gkP~~~I~I~~cg~L~d 177 (643)
. .++..+.++....|..+..
T Consensus 218 dltlsl~np~~L~dvsfHpcVr~kr 242 (418)
T KOG2740|consen 218 DLTLSLNNPRLLGDVSFHPCVRYKR 242 (418)
T ss_pred ceEEEccCccccCCcccccceeecc
Confidence 4 2455666666666666544
No 55
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=24.86 E-value=1.1e+02 Score=34.26 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=40.2
Q ss_pred ceEEEEec---------cCccCCCCceEEEEEEcCHH-HHHHHHhcCCCCCCccCCeEecee
Q 006501 121 SQFFITFR---------RQHHLDGKHVVFGKVVKGLN-IVKKIEQVGTGDGKPAQPVKIIDC 172 (643)
Q Consensus 121 SqFFITL~---------~~p~LDgkytVFGrVIeGmd-VLdkIe~vpt~~gkP~~~I~I~~c 172 (643)
-+||+|-. +-+|--|.||+=|..+.=|| .|.+|..+|..+-....+...+|+
T Consensus 248 vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glPLg~~~~~~p~vMvNl 309 (375)
T COG0026 248 VEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLPLGSTTLLSPSVMVNL 309 (375)
T ss_pred EEEEEECCCcEEEeeccCCCCCccccchhhccccHHHHHHHHHhCCCCCCccccCceEEEEe
Confidence 48999865 44787888999999998888 699999999876555555555554
No 56
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=24.56 E-value=1.6e+02 Score=29.84 Aligned_cols=61 Identities=48% Similarity=0.579 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCccccccCCC
Q 006501 515 RHYRSPPRGRSPPRYQRRSRRSRSISRSPDGYRGRYGDDSQSRSSSPRDKRPTISEGLKCRLGPKIDEEHSPAKRRYRSR 594 (643)
Q Consensus 515 ~r~r~~~r~~sp~r~~~~~~r~~s~s~sp~~~r~~~~~rs~srsrsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~ 594 (643)
++-+++.|.++|.+. .++++.|+++.++|.+. .....|+++|. +.+..+.
T Consensus 122 r~~r~~~rrrs~~rs----srsrs~SRs~s~~Rrr~-~~~~~Rsrsp~-------------------------~~r~~~~ 171 (195)
T KOG0107|consen 122 RRSRSPRRRRSPSRS----SRSRSRSRSRSRVRRRE-SSVEDRSRSPK-------------------------AMRRSSS 171 (195)
T ss_pred ccCCCcccccCCCCC----cccccccccCCCccccc-CcccccccCCc-------------------------ccccCcc
Q ss_pred CCCCCCCCCCCCCC
Q 006501 595 SRSRSLDSSHSKSP 608 (643)
Q Consensus 595 srsrs~~~~~srs~ 608 (643)
.++++.+ +.||
T Consensus 172 ~r~r~~s---~~Sp 182 (195)
T KOG0107|consen 172 PRGRDRS---SGSP 182 (195)
T ss_pred cccCCcc---cCCC
No 57
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=22.89 E-value=32 Score=39.64 Aligned_cols=7 Identities=14% Similarity=0.007 Sum_probs=3.8
Q ss_pred HHHHHhh
Q 006501 37 ENFRALC 43 (643)
Q Consensus 37 ~NFl~Lc 43 (643)
..||++.
T Consensus 38 ~QflQ~h 44 (653)
T KOG2548|consen 38 IQFLQAH 44 (653)
T ss_pred HHHHHHh
Confidence 3566554
Done!