BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006502
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 150/251 (59%), Gaps = 3/251 (1%)
Query: 95 LIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEIN 154
L+ D ER DD +LRFL+ARKFD+ AK M+ +WRK++G DTI++DF + E
Sbjct: 40 LLEDAGFIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKP 98
Query: 155 EVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPA 214
+ +YP YH DK+GRPVY E LG V+ +++ +VT+ +R ++ V +E + PA
Sbjct: 99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPA 158
Query: 215 CTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPG 274
C+ AA +++S +I+D++G+ + + + + + I + YPE + + +IINA G
Sbjct: 159 CSRAAGHLVETSCTIMDLKGISISS-AYSVMSYVREASYISQNYYPERMGKFYIINAPFG 217
Query: 275 FRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCAD-QGGCLRS 333
F + K FLDP T SKI +LG+ YQ +LL+ I A LP GG + +GG S
Sbjct: 218 FSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLS 277
Query: 334 DKGPWQNPEIL 344
D GPW++P+ +
Sbjct: 278 DIGPWRDPKYI 288
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 162/271 (59%), Gaps = 14/271 (5%)
Query: 83 EELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVD 142
E+ +A+ FR S+++++ ER DD +LRFL+ARKFDI+ + M+ E +WR+E+G +
Sbjct: 38 EQEEALLQFR-SILLEKNYKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGAN 95
Query: 143 TIMEDFEF------KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRY 196
TI+ED+E KE ++ YP YH VDK+GRP+Y E LG ++ K+ ++TT +
Sbjct: 96 TIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQM 155
Query: 197 IRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDG 256
+R V+ +E + PAC+ A I++S ++LD++G+ L N + + I + I
Sbjct: 156 LRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSN-AYHVLSYIKDVADISQ 214
Query: 257 DNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 316
+ YPE + + +II++ GF ++ VK FLDP T SKI +LG+ Y+ +LL+ I LP
Sbjct: 215 NYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPV 274
Query: 317 FLGGTC---NCADQGGCLRSDKGPWQNPEIL 344
GGT N D+ SD GPW++P +
Sbjct: 275 KYGGTSVLHNPNDK--FYYSDIGPWRDPRYI 303
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 161/271 (59%), Gaps = 14/271 (5%)
Query: 83 EELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVD 142
E+ +A+ FR S+++++ ER DD +LRFL+ARKFDI+ + M+ E +WR+E+G +
Sbjct: 38 EQEEALLQFR-SILLEKNYKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGAN 95
Query: 143 TIMEDFEF------KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRY 196
TI+ED+E KE ++ YP YH VDK+GRP+Y LG ++ K+ ++TT +
Sbjct: 96 TIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQM 155
Query: 197 IRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDG 256
+R V+ +E + PAC+ A I++S ++LD++G+ L N + + I + I
Sbjct: 156 LRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSN-AYHVLSYIKDVADISQ 214
Query: 257 DNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 316
+ YPE + + +II++ GF ++ VK FLDP T SKI +LG+ Y+ +LL+ I LP
Sbjct: 215 NYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPV 274
Query: 317 FLGGTC---NCADQGGCLRSDKGPWQNPEIL 344
GGT N D+ SD GPW++P +
Sbjct: 275 KYGGTSVLHNPNDK--FYYSDIGPWRDPRYI 303
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 11/239 (4%)
Query: 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIM 145
+A+ FR++ + D L + D + +LR+L+AR FD+ K++ M + +++RK+ +D I+
Sbjct: 14 EALAKFREN-VQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII 72
Query: 146 EDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFE 205
++ + Y G G D +G PV+ + +G +D+ L+ + +R ++ E
Sbjct: 73 S---WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECE 129
Query: 206 KAFAVKFPAC---TIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPET 262
+ C T R +++ T I D +G+GLK+ K A E + +NYPET
Sbjct: 130 ----LLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPET 185
Query: 263 LHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321
L ++F++ A F + +N +K FL T KI VLG ++ LL+ I ++P GGT
Sbjct: 186 LKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGT 244
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 11/239 (4%)
Query: 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIM 145
+A+ FR++ + D L + D + +LR+L+AR FD+ K++ M + +++RK+ +D I+
Sbjct: 14 EALAKFREN-VQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII 72
Query: 146 EDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFE 205
++ + Y G G D +G PV+ + +G +D+ L+ + +R ++ E
Sbjct: 73 S---WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECE 129
Query: 206 KAFAVKFPAC---TIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPET 262
+ C T R +++ T I D +G+GLK+ K A E + +NYPET
Sbjct: 130 ----LLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPET 185
Query: 263 LHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321
L ++F++ A F + +N +K FL T KI VLG ++ LL+ I ++P GGT
Sbjct: 186 LKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGT 244
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 11/239 (4%)
Query: 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIM 145
+A+ FR++ + D L + D + +LR+L+AR FD+ K++ + +++RK+ +D I+
Sbjct: 14 EALAKFREN-VQDVLPALPNPDDYFLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNII 72
Query: 146 EDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFE 205
++ + Y G G D +G PV+ + +G +D+ L+ + +R + E
Sbjct: 73 S---WQPPEVIQQYLSGGXCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKXRECE 129
Query: 206 KAFAVKFPAC---TIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPET 262
+ C T R +++ T I D +G+GLK+ K A E +NYPET
Sbjct: 130 ----LLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPET 185
Query: 263 LHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321
L ++F++ A F + +N +K FL T KI VLG ++ LL+ I ++P GGT
Sbjct: 186 LKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIXVLGANWKEVLLKHISPDQVPVEYGGT 244
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 21/202 (10%)
Query: 110 MMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV-- 167
+LRFL+AR FD+D A + +WR E I D + I +L GYHGV
Sbjct: 51 FLLRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADLHPRSIIGLLKA---GYHGVLR 105
Query: 168 --DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDS 225
D G V I R+ D Y + V V+ + +R +
Sbjct: 106 SRDPTGSKVLIYRIAHWDPK------VFTAYDVFRVSLITSELIVQ----EVETQR--NG 153
Query: 226 STSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSF 285
+I D++G + + + ++ + D++P + + +IN F +++ +K F
Sbjct: 154 IKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPF 213
Query: 286 LDPKTTSKIHVLGNKYQSKLLE 307
L K +IH+ GN Y+ LL+
Sbjct: 214 LTEKIKERIHMHGNNYKQSLLQ 235
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 21/202 (10%)
Query: 110 MMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV-- 167
+LRFL+AR FD+D A + +WR E I D + I +L GYHGV
Sbjct: 35 FLLRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADLHPRSIIGLLKA---GYHGVLR 89
Query: 168 --DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDS 225
D G V I R+ D Y + V V+ + +R +
Sbjct: 90 SRDPTGSKVLIYRIAHWDPK------VFTAYDVFRVSLITSELIVQ----EVETQR--NG 137
Query: 226 STSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSF 285
+I D++G + + + ++ + D++P + + +IN F +++ +K F
Sbjct: 138 IKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPF 197
Query: 286 LDPKTTSKIHVLGNKYQSKLLE 307
L K +IH GN Y+ LL+
Sbjct: 198 LTEKIKERIHXHGNNYKQSLLQ 219
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 113/277 (40%), Gaps = 35/277 (12%)
Query: 77 EDVRDVEEL---QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEML 133
E VR+++E+ QA ++ + E + E+ D LRF++ARKF++ +A + +
Sbjct: 60 EAVRELQEMVQAQAASGEELAVAVAERVQEK--DSGFFLRFIRARKFNVGRAYELLRGYV 117
Query: 134 QWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV----DKEGRPVYIERLGKVDSNKLMQ 189
+R ++ E F+ V GY GV DK GR V + + S ++
Sbjct: 118 NFRLQYP-----ELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI-- 170
Query: 190 VTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNF----SKNAR 245
T D ++ + EK + + I+ I + +G ++ + + R
Sbjct: 171 --TFDEILQAYCFILEKLLENE--------ETQINGFCIIENFKGFTMQQAASLRTSDLR 220
Query: 246 ELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKL 305
+++ LQ D++P + I+ F +N VK FL K ++ V G+ S
Sbjct: 221 KMVDMLQ----DSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGF 275
Query: 306 LEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPE 342
+ ID LP GGT D GP E
Sbjct: 276 YQEIDENILPSDFGGTLPKYDGKAVAEQLFGPQAQAE 312
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 108/271 (39%), Gaps = 23/271 (8%)
Query: 77 EDVRDVEE-LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQW 135
E VR+++E +QA A + L + + D LRF++ARKF++ +A + + +
Sbjct: 60 EAVRELQEXVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNF 119
Query: 136 RKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV----DKEGRPVYIERLGKVDSNKLMQVT 191
R ++ E F+ V GY GV DK GR V + + N Q
Sbjct: 120 RLQYP-----ELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVXLFNI----ENWQSQEI 170
Query: 192 TMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRL 251
T D ++ + EK ++ I I++ Q L+ + + R+ + L
Sbjct: 171 TFDEILQAYCFILEK--LLENEETQINGFCIIENFKGFTXQQAASLR--TSDLRKXVDXL 226
Query: 252 QKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDA 311
Q D++P + I+ F +N VK FL K ++ V G+ S + ID
Sbjct: 227 Q----DSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGFYQEIDE 281
Query: 312 RELPEFLGGTCNCADQGGCLRSDKGPWQNPE 342
LP GGT D GP E
Sbjct: 282 NILPSDFGGTLPKYDGKAVAEQLFGPQAQAE 312
>pdb|3BIY|A Chain A, Crystal Structure Of P300 Histone Acetyltransferase Domain
In Complex With A Bisubstrate Inhibitor, Lys-Coa
Length = 380
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 425 SYDFSIHFFKAKVVGKTSYAGSFSGYDEYVPMVDKAVDSSWKKQPSLRSPAAKGSLPQLP 484
SY S+HFF+ K + Y GY EYV + W PS P P
Sbjct: 110 SYLDSVHFFRPKCLRTAVYHEILIGYLEYVKKLGYTTGHIWACPPSEGDDYIFHCHP--P 167
Query: 485 TSKTPEGIRARIWAAVMAFFMMFVTLFRSVAYRVTH 520
K P+ R + W M L ++V+ R+ H
Sbjct: 168 DQKIPKPKRLQEWYKKM--------LDKAVSERIVH 195
>pdb|3G02|A Chain A, Structure Of Enantioselective Mutant Of Epoxide Hydrolase
From Aspergillus Niger Generated By Directed Evolution
pdb|3G02|B Chain B, Structure Of Enantioselective Mutant Of Epoxide Hydrolase
From Aspergillus Niger Generated By Directed Evolution
Length = 408
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 515 AYRVTHRIPETSTGHDLNISEVAVDANEKEEFRP----PSPSPSLTEVD----LLSSVTK 566
AY + H ++ GH L+ S +A+ A E++ P PS ++ E+ L S +
Sbjct: 251 AYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYWLTESFPR 310
Query: 567 RLSELEEKVDTLQAKPSEMPYEKEELLH 594
+ E V T A PY+KE +H
Sbjct: 311 AIHTYREWVPTASAPNGATPYQKELYIH 338
>pdb|3AHY|A Chain A, Crystal Structure Of Beta-Glucosidase 2 From Fungus
Trichoderma Reesei In Complex With Tris
pdb|3AHY|B Chain B, Crystal Structure Of Beta-Glucosidase 2 From Fungus
Trichoderma Reesei In Complex With Tris
pdb|3AHY|C Chain C, Crystal Structure Of Beta-Glucosidase 2 From Fungus
Trichoderma Reesei In Complex With Tris
pdb|3AHY|D Chain D, Crystal Structure Of Beta-Glucosidase 2 From Fungus
Trichoderma Reesei In Complex With Tris
Length = 473
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 350 GGAPRARQIVKVLNSDGKVIAYAKPPMLKGSDTSTAESGSEAEDIASPKAMKSYSHLRLT 409
G A A QI ++ DG+ P + DT A+ G A+ + A SY+
Sbjct: 16 GFATAAYQIEGAVDQDGR-----GPSIW---DTFCAQPGKIADGSSGVTACDSYNR---- 63
Query: 410 PVREEVRIWTLLCDYSYDFSIHFFKAKVVGKTSYAGSFSGYDEYVPMVDKAVDSS 464
E++ + L SY FSI + + G A + +G D YV VD +D+
Sbjct: 64 -TAEDIALLKSLGAKSYRFSISWSRIIPEGGRGDAVNQAGIDHYVKFVDDLLDAG 117
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 36/223 (16%)
Query: 111 MLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHG----YHG 166
LR+L+A K+ + L WR+EFG+ + E+ K ++++ G
Sbjct: 90 FLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILG 149
Query: 167 VDKEGRPVYIERLGKVD---SNKLMQ--VTTMDRYIRYHVQGFEK-AFAVKFPACTIAAK 220
+ + RP+ + G+ + S++ +Q V ++R I + G + A + F K
Sbjct: 150 YENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPK 209
Query: 221 RHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWN 280
+ ++ I + GVG +E++ LQ +YPE L + + N L W
Sbjct: 210 --VPGNSKIPPI-GVG--------KEVLHILQT----HYPERLGKALLTNIP---WLAWT 251
Query: 281 TVK---SFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGG 320
+K F+DP T K+ + ++ + EL GG
Sbjct: 252 FLKLIHPFIDPLTREKL-----VFDEPFVKYVPKNELDSLYGG 289
>pdb|3U7I|A Chain A, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|B Chain B, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|C Chain C, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|D Chain D, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
Length = 223
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 431 HFFKA--KVVGKTSYAGSFSGYDEYVPMVDKAVDSSWKKQ 468
HF ++ +++ + YD+ VP +DK V S+W+KQ
Sbjct: 29 HFLESYKELISNNETIEQINLYDDVVPXIDKTVLSAWEKQ 68
>pdb|2ICE|A Chain A, Crig Bound To C3c
pdb|2ICE|D Chain D, Crig Bound To C3c
pdb|2ICF|A Chain A, Crig Bound To C3b
Length = 642
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 520 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 577
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 578 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 637
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|2A73|A Chain A, Human Complement Component C3
pdb|2A74|A Chain A, Human Complement Component C3c
pdb|2A74|D Chain D, Human Complement Component C3c
pdb|2QKI|A Chain A, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|D Chain D, Human C3c In Complex With The Inhibitor Compstatin
Length = 643
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 520 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 577
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 578 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 637
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|2HR0|A Chain A, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2I07|A Chain A, Human Complement Component C3b
Length = 645
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 520 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 577
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 578 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 637
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|2XWB|A Chain A, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|C Chain C, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 642
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 520 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 577
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 578 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 637
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|3G6J|A Chain A, C3b In Complex With A C3b Specific Fab
pdb|3G6J|C Chain C, C3b In Complex With A C3b Specific Fab
Length = 644
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 520 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 577
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 578 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 637
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|2WII|A Chain A, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|A Chain A, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|C Chain C, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|E Chain E, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|G Chain G, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L3O|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|D Chain D, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L5N|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
pdb|3NMS|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|A Chain A, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|D Chain D, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|2XWJ|A Chain A, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|C Chain C, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|E Chain E, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|G Chain G, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|3T4A|A Chain A, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|D Chain D, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 645
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 520 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 577
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 578 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 637
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|4AUM|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 23/145 (15%)
Query: 409 TPVREEVRIWTLLCDYSYDFSI-HFFKAKVVGKTSYA------GSFSGYDEYVPMVDKA- 460
T ++ +R TLL D+ + I HF +V + +A G+F+ Y ++ + +
Sbjct: 68 TSLKAGIRGPTLLEDFMFRQKIQHFDHERVPERAVHARGAGAHGTFTSYADWSNITAASF 127
Query: 461 VDSSWKKQPS-LRSPAAKGSLPQLPTSKTPEGIRARIWA----------AVMAFFMM--- 506
++++ K+ P +R GS T++ G R + + FF+
Sbjct: 128 LNATGKQTPVFVRFSTVAGSRGSADTARDVHGFATRFYTDEGNFDIVGNNIPVFFIQDAI 187
Query: 507 -FVTLFRSVAYRVTHRIPETSTGHD 530
F L SV R + IP+ +T HD
Sbjct: 188 QFPDLIHSVKPRPDNEIPQAATAHD 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,728,889
Number of Sequences: 62578
Number of extensions: 790116
Number of successful extensions: 1785
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1753
Number of HSP's gapped (non-prelim): 34
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)