Query 006502
Match_columns 643
No_of_seqs 346 out of 1584
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 00:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 8.6E-45 1.9E-49 382.5 23.2 276 69-347 5-285 (317)
2 KOG1470 Phosphatidylinositol t 100.0 2.9E-38 6.3E-43 329.5 19.7 206 106-338 48-253 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 7.3E-30 1.6E-34 240.7 9.6 157 155-321 2-159 (159)
4 smart00516 SEC14 Domain in hom 99.9 2.5E-27 5.3E-32 223.2 14.3 154 156-323 5-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 2.8E-24 6E-29 199.2 14.0 144 165-321 14-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.3 5.2E-13 1.1E-17 126.0 3.1 139 164-324 6-146 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.6 5.9E-08 1.3E-12 77.3 5.2 47 85-132 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 97.9 3.8E-05 8.2E-10 83.3 9.6 127 167-314 89-215 (467)
9 PRK01026 tetrahydromethanopter 77.8 2.6 5.6E-05 36.3 3.3 25 555-579 11-35 (77)
10 TIGR01149 mtrG N5-methyltetrah 77.5 2.6 5.7E-05 35.5 3.2 25 555-579 8-32 (70)
11 COG4064 MtrG Tetrahydromethano 77.5 2.6 5.7E-05 35.5 3.2 25 555-579 11-35 (75)
12 PF10805 DUF2730: Protein of u 71.7 39 0.00085 30.7 9.7 18 496-513 8-25 (106)
13 PF04210 MtrG: Tetrahydrometha 70.4 4.2 9.2E-05 34.3 2.8 25 555-579 8-32 (70)
14 PF14555 UBA_4: UBA-like domai 67.0 17 0.00038 27.4 5.4 36 86-130 2-37 (43)
15 PF02845 CUE: CUE domain; Int 51.0 48 0.001 24.8 5.3 38 86-131 3-40 (42)
16 smart00546 CUE Domain that may 45.1 57 0.0012 24.4 4.9 38 86-131 4-41 (43)
17 TIGR03752 conj_TIGR03752 integ 43.4 1.3E+02 0.0029 34.4 9.5 74 556-629 56-136 (472)
18 TIGR02132 phaR_Bmeg polyhydrox 42.5 87 0.0019 31.3 6.9 73 557-630 70-153 (189)
19 KOG1962 B-cell receptor-associ 41.1 1.2E+02 0.0027 31.2 8.1 72 559-630 114-190 (216)
20 KOG1838 Alpha/beta hydrolase [ 40.2 1.8E+02 0.0038 32.9 9.8 89 168-281 121-215 (409)
21 PRK00117 recX recombination re 40.0 34 0.00073 32.7 3.8 99 27-132 53-153 (157)
22 TIGR03185 DNA_S_dndD DNA sulfu 39.6 1.3E+02 0.0028 35.8 9.2 58 559-618 391-448 (650)
23 PF08317 Spc7: Spc7 kinetochor 38.8 1.6E+02 0.0036 31.8 9.2 73 560-632 178-250 (325)
24 PF12718 Tropomyosin_1: Tropom 36.6 1.4E+02 0.003 28.7 7.3 68 558-625 34-107 (143)
25 PF11221 Med21: Subunit 21 of 35.1 3.1E+02 0.0067 26.1 9.5 61 564-632 78-138 (144)
26 COG1340 Uncharacterized archae 34.3 3E+02 0.0065 29.7 10.0 65 561-634 109-173 (294)
27 PF10368 YkyA: Putative cell-w 34.0 1.7E+02 0.0036 29.8 7.8 78 558-635 31-112 (204)
28 PF05377 FlaC_arch: Flagella a 34.0 1.1E+02 0.0025 24.8 5.2 14 567-580 1-14 (55)
29 PF01496 V_ATPase_I: V-type AT 31.6 1.9E+02 0.004 35.1 9.0 64 569-632 204-271 (759)
30 PHA01750 hypothetical protein 30.0 2.5E+02 0.0053 23.8 6.6 42 591-634 30-71 (75)
31 KOG0612 Rho-associated, coiled 29.0 2E+02 0.0043 36.6 8.5 46 561-614 443-491 (1317)
32 PRK11613 folP dihydropteroate 28.8 7.5E+02 0.016 26.5 12.5 44 220-264 174-217 (282)
33 PF05276 SH3BP5: SH3 domain-bi 28.3 4.1E+02 0.0089 27.8 9.7 52 565-618 97-148 (239)
34 TIGR02132 phaR_Bmeg polyhydrox 28.0 1.9E+02 0.004 29.1 6.6 13 609-621 142-154 (189)
35 PF14712 Snapin_Pallidin: Snap 27.3 1.5E+02 0.0032 25.7 5.4 31 602-632 11-41 (92)
36 PRK10884 SH3 domain-containing 27.1 4.4E+02 0.0095 26.9 9.5 72 564-635 91-169 (206)
37 PRK09039 hypothetical protein; 27.0 1.1E+02 0.0023 33.6 5.4 19 500-518 29-47 (343)
38 PF10212 TTKRSYEDQ: Predicted 26.8 3.3E+02 0.0072 31.7 9.3 24 590-613 461-484 (518)
39 PF04740 LXG: LXG domain of WX 26.5 2.6E+02 0.0057 27.5 7.8 114 487-620 46-160 (204)
40 PF05276 SH3BP5: SH3 domain-bi 26.2 3.4E+02 0.0073 28.5 8.6 73 562-634 145-227 (239)
41 KOG3313 Molecular chaperone Pr 26.1 3.8E+02 0.0081 27.0 8.3 62 573-634 22-86 (187)
42 PF13080 DUF3926: Protein of u 25.6 60 0.0013 24.9 2.2 22 608-632 13-34 (44)
43 PHA02562 46 endonuclease subun 25.6 1.9E+02 0.0042 33.1 7.5 74 558-632 298-371 (562)
44 PRK14137 recX recombination re 25.2 1.5E+02 0.0032 30.0 5.7 26 109-134 156-181 (195)
45 PF03961 DUF342: Protein of un 24.7 3.4E+02 0.0073 30.7 9.0 55 560-614 342-398 (451)
46 COG4479 Uncharacterized protei 24.6 1.7E+02 0.0038 25.0 4.9 51 86-136 19-72 (74)
47 PF10158 LOH1CR12: Tumour supp 24.6 2.5E+02 0.0053 26.7 6.6 63 562-625 52-114 (131)
48 PF07426 Dynactin_p22: Dynacti 24.4 2.1E+02 0.0045 28.4 6.4 17 559-575 5-21 (174)
49 PF13234 rRNA_proc-arch: rRNA- 24.2 2.6E+02 0.0056 29.2 7.5 70 561-633 182-263 (268)
50 PRK14136 recX recombination re 24.2 93 0.002 33.7 4.1 24 108-131 278-301 (309)
51 smart00787 Spc7 Spc7 kinetocho 24.0 3.9E+02 0.0083 29.1 8.9 74 560-633 173-260 (312)
52 PF11802 CENP-K: Centromere-as 23.1 6.4E+02 0.014 26.9 9.9 38 559-596 52-89 (268)
53 PF05335 DUF745: Protein of un 23.0 1.3E+02 0.0029 30.3 4.8 31 587-617 140-177 (188)
54 KOG0249 LAR-interacting protei 22.9 4.8E+02 0.01 31.7 9.7 38 593-630 211-248 (916)
55 PHA00687 hypothetical protein 22.8 1.8E+02 0.0039 22.8 4.3 30 583-612 9-48 (56)
56 KOG2129 Uncharacterized conser 22.2 5.3E+02 0.011 29.3 9.4 75 558-632 200-288 (552)
57 PF14282 FlxA: FlxA-like prote 22.2 4.5E+02 0.0097 23.8 7.7 52 556-608 16-68 (106)
58 PF15294 Leu_zip: Leucine zipp 21.9 2.3E+02 0.005 30.4 6.5 61 566-637 190-250 (278)
59 PF05529 Bap31: B-cell recepto 21.7 2.6E+02 0.0056 27.7 6.6 62 560-622 119-184 (192)
60 PLN03214 probable enoyl-CoA hy 21.4 2.9E+02 0.0063 29.1 7.3 21 618-638 251-271 (278)
61 PRK06569 F0F1 ATP synthase sub 21.3 85 0.0018 30.7 2.9 96 492-609 9-106 (155)
62 PF05377 FlaC_arch: Flagella a 21.2 2.7E+02 0.0058 22.7 5.2 36 599-634 1-36 (55)
63 PF01102 Glycophorin_A: Glycop 20.5 1.3E+02 0.0028 28.3 3.9 33 490-522 63-95 (122)
64 COG2137 OraA Uncharacterized p 20.2 2.1E+02 0.0045 28.5 5.5 32 101-132 133-164 (174)
65 PRK09261 phospho-2-dehydro-3-d 20.1 6.3E+02 0.014 28.0 9.5 67 160-237 205-272 (349)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=8.6e-45 Score=382.54 Aligned_cols=276 Identities=45% Similarity=0.756 Sum_probs=247.1
Q ss_pred CccccccccCCCC--HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCcccc
Q 006502 69 GRVSSVSIEDVRD--VEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIME 146 (643)
Q Consensus 69 ~~v~s~~iedl~d--~eE~~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArkfDvekA~k~L~~~L~WRke~g~d~i~~ 146 (643)
..++.+..+++.+ +.+.+.++++| |+..+++++...+|+++||||||||+||+++|+++|.+++.||.+++.+.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~ 83 (317)
T KOG1471|consen 5 PMLAKVAKEELNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFE 83 (317)
T ss_pred cccccccccccCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhh
Confidence 3445555555554 55677788888 88899999975566579999999999999999999999999999999999987
Q ss_pred ccchHHHHHHHhhcCcccccCCCCCCcEEEEeccccCcchhhhcchHhHHHHHHHHHHHHHHHhhChhhhhhhhCCCCcE
Q 006502 147 DFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSS 226 (643)
Q Consensus 147 d~~~~el~evlk~~p~~~~G~DkeGRPV~i~rlg~~d~~kl~~~~t~e~~ik~~v~~~E~~l~~~~pacsi~~~~~i~gi 226 (643)
+ .....++.+++|++++|+|++|+||++.+.|..|...++..+...++.++++..+|+.+..+++.|....+++++|+
T Consensus 84 ~--~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~ 161 (317)
T KOG1471|consen 84 D--FEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGI 161 (317)
T ss_pred c--cccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccee
Confidence 6 23334455688999999999999999999999999999999999999999999999999999999988878899999
Q ss_pred EEEEeCCCCCCCCcchHHHHHHHHHHHHhccCCcccceeEEEEecChHHHHHHHHHHhcCChhhhcceEEcCCcchhHHH
Q 006502 227 TSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLL 306 (643)
Q Consensus 227 tiIIDl~Gvsl~~~~k~~~~lik~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~~lg~~~~e~L~ 306 (643)
++|+|++|+++.|+....+.+++.++.++|+||||+++++||||+|++|+.+|++|||||+++|++||++++.++.+.|.
T Consensus 162 ~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~ 241 (317)
T KOG1471|consen 162 VTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLL 241 (317)
T ss_pred EEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhh
Confidence 99999999999999989999999999999999999999999999999999999999999999999999977777889999
Q ss_pred hhcCCCCCccccCCccccC---CCCCCccCCCCCCCCHHHHHHH
Q 006502 307 EIIDARELPEFLGGTCNCA---DQGGCLRSDKGPWQNPEILKMV 347 (643)
Q Consensus 307 e~Id~s~LP~eyGGt~~~~---~~ggcl~~~~gpW~dp~i~k~v 347 (643)
++|++++||++|||+|.+. ..++|...+.++|.++.+.+..
T Consensus 242 k~i~~~~LP~~yGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (317)
T KOG1471|consen 242 KYIPPEVLPEEYGGTCGDLDDPNGGGCDLSDEGPWKEPEIKKGK 285 (317)
T ss_pred hhCCHhhCccccCCCccccccccCCcCccccccccccccccccc
Confidence 9999999999999999996 3567999999999887766644
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-38 Score=329.48 Aligned_cols=206 Identities=32% Similarity=0.511 Sum_probs=182.0
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHhhcCcccccCCCCCCcEEEEeccccCcc
Q 006502 106 DDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSN 185 (643)
Q Consensus 106 dD~~~LLRFLRArkfDvekA~k~L~~~L~WRke~g~d~i~~d~~~~el~evlk~~p~~~~G~DkeGRPV~i~rlg~~d~~ 185 (643)
+| .|+||||||||||+++|.+|+.++|.||+.+++...+ ...|+..-+..+.+++.|.|++||||+|+++.....+
T Consensus 48 ~d-~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~---~~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn 123 (324)
T KOG1470|consen 48 SD-ACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVI---EADEVAAELETGKAYILGHDKDGRPVLYLRPRPHRQN 123 (324)
T ss_pred cH-HHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCcccc---CHHHHHHHhhcCcEEEecccCCCCeEEEEecCCCCCC
Confidence 44 6999999999999999999999999999999997722 3445666678899999999999999999965544444
Q ss_pred hhhhcchHhHHHHHHHHHHHHHHHhhChhhhhhhhCCCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHHhccCCccccee
Q 006502 186 KLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQ 265 (643)
Q Consensus 186 kl~~~~t~e~~ik~~v~~~E~~l~~~~pacsi~~~~~i~gitiIIDl~Gvsl~~~~k~~~~lik~ilkilqd~YPErL~r 265 (643)
. .+.+++.+++|+++|.++..+. .+++++++++|++|+|++|.+ +.+.+.+++++|+||||||+.
T Consensus 124 ~----~t~~~~~r~~Vy~mE~Ai~~lp--------~~qe~~~~L~D~~~fs~sN~d---~~~~k~~~~~lq~hYPErLg~ 188 (324)
T KOG1470|consen 124 T----KTQKELERLLVYTLENAILFLP--------PGQEQFVWLFDLTGFSMSNPD---IKFLKELLHILQDHYPERLGK 188 (324)
T ss_pred C----CCHHHHHHHHHHHHHHHHHhCC--------CCcceEEEEEecccCcccCCC---cHHHHHHHHHHHHhChHHhhh
Confidence 3 5789999999999999997654 457889999999999999888 889999999999999999999
Q ss_pred EEEEecChHHHHHHHHHHhcCChhhhcceEEcCCcchhHHHhhcCCCCCccccCCccccCCCCCCccCCCCCC
Q 006502 266 MFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPW 338 (643)
Q Consensus 266 I~IINaP~~f~~lWkiVKpFLdpkTr~KI~~lg~~~~e~L~e~Id~s~LP~eyGGt~~~~~~ggcl~~~~gpW 338 (643)
.+|+|+||+|..+|+++||||||+|++||.|+.+. ..|.++||+++||..|||+..+. +.+..+|
T Consensus 189 a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~--~~l~~~~d~~~l~s~~GG~~~~~------y~~e~~~ 253 (324)
T KOG1470|consen 189 ALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK--DDLSEYFDESQLPSLFGGKLLFE------YTHEEYW 253 (324)
T ss_pred hhhcCChHHHHHHHHHhhhccChhhhceeEEecCh--hHHHhhCCccccchhhCCCcccc------cCCcchh
Confidence 99999999999999999999999999999999774 45999999999999999988774 4566688
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=7.3e-30 Score=240.67 Aligned_cols=157 Identities=37% Similarity=0.585 Sum_probs=130.6
Q ss_pred HHHhhcCcccccCCCCCCcEEEEeccccCcchhhhcchHhHHHHHHHHHHHHHHHhhChhhhhhhhCCCCcEEEEEeCCC
Q 006502 155 EVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQG 234 (643)
Q Consensus 155 evlk~~p~~~~G~DkeGRPV~i~rlg~~d~~kl~~~~t~e~~ik~~v~~~E~~l~~~~pacsi~~~~~i~gitiIIDl~G 234 (643)
++.+.++++++|+|++||||+|+++|++|+.. .+.+++++++++.+|.+++...+ ..+++++++|+|++|
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g 71 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKK----FSPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSG 71 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHT----S-HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCc----CCHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCC
Confidence 35788999999999999999999999999986 46889999999999999864221 356899999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHhccCCcccceeEEEEecChHHHHHHHHHHhcCChhhhcceEEcCC-cchhHHHhhcCCCC
Q 006502 235 VGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN-KYQSKLLEIIDARE 313 (643)
Q Consensus 235 vsl~~~~k~~~~lik~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~~lg~-~~~e~L~e~Id~s~ 313 (643)
+++++++....+.++.+++++|++||++++++||||+|++|+.+|+++++||+++|++||+++++ ++.+.|.++||+++
T Consensus 72 ~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~ 151 (159)
T PF00650_consen 72 FSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQ 151 (159)
T ss_dssp --HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGG
T ss_pred ceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhH
Confidence 99998875558999999999999999999999999999999999999999999999999999965 45578999999999
Q ss_pred CccccCCc
Q 006502 314 LPEFLGGT 321 (643)
Q Consensus 314 LP~eyGGt 321 (643)
||.+|||+
T Consensus 152 lP~~~GG~ 159 (159)
T PF00650_consen 152 LPVEYGGT 159 (159)
T ss_dssp SBGGGTSS
T ss_pred CchhcCCC
Confidence 99999996
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=2.5e-27 Score=223.23 Aligned_cols=154 Identities=40% Similarity=0.651 Sum_probs=138.9
Q ss_pred HHhhcCcccccCCCCCCcEEEEeccccCcchhhhcchHhHHHHHHHHHHHHHHHhhChhhhhhhhCCCCcEEEEEeCCCC
Q 006502 156 VLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV 235 (643)
Q Consensus 156 vlk~~p~~~~G~DkeGRPV~i~rlg~~d~~kl~~~~t~e~~ik~~v~~~E~~l~~~~pacsi~~~~~i~gitiIIDl~Gv 235 (643)
...+.++++ |+|++||||+|+++++++++. .+.+++++++++.+|.++... ....+++++++|+|++|+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKS----VTLEELLRYLVYVLEKILQRE------KKTGGIEGFTVIFDLKGL 73 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCc----CCHHHHHHHHHHHHHHHHHHH------hcCCCeeeEEEEEECCCC
Confidence 345667776 999999999999999998765 689999999999999988631 235578999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhccCCcccceeEEEEecChHHHHHHHHHHhcCChhhhcceEEcCCcchhHHHhhcCCCCCc
Q 006502 236 GLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELP 315 (643)
Q Consensus 236 sl~~~~k~~~~lik~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~~lg~~~~e~L~e~Id~s~LP 315 (643)
++++++ .+.++.++++++++||++++++||||+|++++.+|+++++||++++++||+++++++.+.|.++||+++||
T Consensus 74 ~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP 150 (158)
T smart00516 74 SMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLP 150 (158)
T ss_pred Cccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCc
Confidence 999866 78899999999999999999999999999999999999999999999999999986678999999999999
Q ss_pred cccCCccc
Q 006502 316 EFLGGTCN 323 (643)
Q Consensus 316 ~eyGGt~~ 323 (643)
.+|||++.
T Consensus 151 ~~~GG~~~ 158 (158)
T smart00516 151 EELGGTLD 158 (158)
T ss_pred HhhCCCCC
Confidence 99999963
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.91 E-value=2.8e-24 Score=199.23 Aligned_cols=144 Identities=40% Similarity=0.625 Sum_probs=128.0
Q ss_pred ccCCCCCCcEEEEeccccCcchhhhcchHhHHHHHHHHHHHHHHHhhChhhhhhhhCCCCcEEEEEeCCCCCCCCcchHH
Q 006502 165 HGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNA 244 (643)
Q Consensus 165 ~G~DkeGRPV~i~rlg~~d~~kl~~~~t~e~~ik~~v~~~E~~l~~~~pacsi~~~~~i~gitiIIDl~Gvsl~~~~k~~ 244 (643)
.|.|++||||+++++++.++... ...+++++++++.+|..+.... ....++++|+|++|++++++. ..
T Consensus 14 ~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~--------~~~~~~~~i~D~~~~~~~~~~-~~ 81 (157)
T cd00170 14 GGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDD--------EQVEGFVVIIDLKGLSLSHLL-PD 81 (157)
T ss_pred CCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhh--------hcccceEEEEECCCCChhccc-hh
Confidence 44699999999999997666543 2348999999999999886432 223799999999999999986 56
Q ss_pred HHHHHHHHHHhccCCcccceeEEEEecChHHHHHHHHHHhcCChhhhcceEEcCCcchhHHHhhcCCCCCccccCCc
Q 006502 245 RELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321 (643)
Q Consensus 245 ~~lik~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~~lg~~~~e~L~e~Id~s~LP~eyGGt 321 (643)
.+.++.++++++++||++++++||||+|++|+.+|+++++|+++++++||++++++ .+.|.++||+++||.+|||+
T Consensus 82 ~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 82 PSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 88999999999999999999999999999999999999999999999999999875 58999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.33 E-value=5.2e-13 Score=126.02 Aligned_cols=139 Identities=20% Similarity=0.339 Sum_probs=93.7
Q ss_pred cccCCCCCCcEEEEeccccCcchhhhcchHhHHHHHHHHHHHHHHHhhChhhhhhhhCCCCcEEEEEeCCCCCCCCcchH
Q 006502 164 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKN 243 (643)
Q Consensus 164 ~~G~DkeGRPV~i~rlg~~d~~kl~~~~t~e~~ik~~v~~~E~~l~~~~pacsi~~~~~i~gitiIIDl~Gvsl~~~~k~ 243 (643)
..|+|++||||+++..... ++. ...+.++.|++..+... -...++++|+|+.|.+..+..
T Consensus 6 ~gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~-------------~~~~~f~vVid~~~~~~~~~~-- 65 (149)
T PF13716_consen 6 PGGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEE-------------VVDKPFSVVIDHTGFSRSSEP-- 65 (149)
T ss_dssp EEEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TT-------------TTTS-EEEEEE-TT--GGG----
T ss_pred ecccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHH-------------hcCCCEEEEEEcCCCccccCC--
Confidence 3589999999999997777 432 35666676666555211 113469999999999875432
Q ss_pred HHHHHHHHHHHhccCCcccceeEEEEecChHHHHHH-HHHHhcCChhh-hcceEEcCCcchhHHHhhcCCCCCccccCCc
Q 006502 244 ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKT-TSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321 (643)
Q Consensus 244 ~~~lik~ilkilqd~YPErL~rI~IINaP~~f~~lW-kiVKpFLdpkT-r~KI~~lg~~~~e~L~e~Id~s~LP~eyGGt 321 (643)
....++.+.+.+...|+..|+++||||++++++.++ .+.+++++++. ..||.++.+ .++|.++||+++||+.+||.
T Consensus 66 ~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~~ 143 (149)
T PF13716_consen 66 SLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPGV 143 (149)
T ss_dssp -HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------HH
T ss_pred chHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCCE
Confidence 367889999999999999999999999999999999 55567778888 899998866 47899999999999999998
Q ss_pred ccc
Q 006502 322 CNC 324 (643)
Q Consensus 322 ~~~ 324 (643)
+..
T Consensus 144 ~~~ 146 (149)
T PF13716_consen 144 LQY 146 (149)
T ss_dssp H--
T ss_pred Eec
Confidence 765
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.61 E-value=5.9e-08 Score=77.30 Aligned_cols=47 Identities=40% Similarity=0.591 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006502 85 LQAVDAFRQSLIMD--------ELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (643)
Q Consensus 85 ~~aL~efRq~L~~~--------~~LP~~~dD~~~LLRFLRArkfDvekA~k~L~~~ 132 (643)
+++|++|++.|... +.....++| .+||||||||+||+++|.+||.+|
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 47899999999873 345556677 599999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=97.93 E-value=3.8e-05 Score=83.26 Aligned_cols=127 Identities=22% Similarity=0.287 Sum_probs=98.4
Q ss_pred CCCCCCcEEEEeccccCcchhhhcchHhHHHHHHHHHHHHHHHhhChhhhhhhhCCCCcEEEEEeCCCCCCCCcchHHHH
Q 006502 167 VDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARE 246 (643)
Q Consensus 167 ~DkeGRPV~i~rlg~~d~~kl~~~~t~e~~ik~~v~~~E~~l~~~~pacsi~~~~~i~gitiIIDl~Gvsl~~~~k~~~~ 246 (643)
.|++||+|+++-..++...+= ..-.++++|.++.++..++. -+++++=-.|+...+.+ .++
T Consensus 89 ~D~~gr~iivv~a~rlp~~~e---ld~~~li~~~v~~id~~Ve~--------------DYt~vYfh~gl~s~nkp--~l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSE---LDDIRLISYLVYTIDKYVEN--------------DYTLVYFHHGLPSDNKP--YLQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhh---hhhHHHHHHHHHHHHHHHhc--------------cceeeehhcCCcccccc--hHH
Confidence 699999999998888766541 12233899999999988753 15666555666665544 355
Q ss_pred HHHHHHHHhccCCcccceeEEEEecChHHHHHHHHHHhcCChhhhcceEEcCCcchhHHHhhcCCCCC
Q 006502 247 LILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (643)
Q Consensus 247 lik~ilkilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~~lg~~~~e~L~e~Id~s~L 314 (643)
++....+-+-.+|=--++.+|+|.+-|+.+++|+++|||++.|...||+-+ ++.++|.++|.-++|
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~--n~lseL~~~l~l~rL 215 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYF--NSLSELFEALKLNRL 215 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEe--ehHHHHHHhhhhhhh
Confidence 665555555667888999999999999999999999999999999999888 456899999885554
No 9
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=77.84 E-value=2.6 Score=36.27 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006502 555 LTEVDLLSSVTKRLSELEEKVDTLQ 579 (643)
Q Consensus 555 ~~~~~~~~~~~~r~~~le~~~~~l~ 579 (643)
.++.+++..+++||.++||||+.-+
T Consensus 11 iv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 11 VVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999998643
No 10
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=77.52 E-value=2.6 Score=35.46 Aligned_cols=25 Identities=44% Similarity=0.630 Sum_probs=22.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006502 555 LTEVDLLSSVTKRLSELEEKVDTLQ 579 (643)
Q Consensus 555 ~~~~~~~~~~~~r~~~le~~~~~l~ 579 (643)
+++.+++..+++||.++|+||+.-+
T Consensus 8 ~v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998643
No 11
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=77.50 E-value=2.6 Score=35.45 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006502 555 LTEVDLLSSVTKRLSELEEKVDTLQ 579 (643)
Q Consensus 555 ~~~~~~~~~~~~r~~~le~~~~~l~ 579 (643)
++++|++..+.+||.++|+||+...
T Consensus 11 ~v~~~dfne~~kRLdeieekvef~~ 35 (75)
T COG4064 11 VVDPDDFNEIHKRLDEIEEKVEFVN 35 (75)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhhH
Confidence 5888999999999999999998643
No 12
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=71.74 E-value=39 Score=30.68 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006502 496 IWAAVMAFFMMFVTLFRS 513 (643)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ 513 (643)
-|..+.|++..+++++..
T Consensus 8 ~w~ii~a~~~~~~~~~~~ 25 (106)
T PF10805_consen 8 NWGIIWAVFGIAGGIFWL 25 (106)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 345566666666666663
No 13
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=70.40 E-value=4.2 Score=34.29 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006502 555 LTEVDLLSSVTKRLSELEEKVDTLQ 579 (643)
Q Consensus 555 ~~~~~~~~~~~~r~~~le~~~~~l~ 579 (643)
+++.+++..+++||.++|+||+.-+
T Consensus 8 iv~~~~~~~i~~rLd~iEeKvEf~~ 32 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEKVEFTN 32 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhHH
Confidence 4688999999999999999997543
No 14
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=66.95 E-value=17 Score=27.38 Aligned_cols=36 Identities=17% Similarity=0.411 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006502 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (643)
Q Consensus 86 ~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArkfDvekA~k~L~ 130 (643)
+.|.+|...... ++ ..-..||.+++||++.|+..+-
T Consensus 2 e~i~~F~~iTg~--------~~-~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITGA--------DE-DVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH-S--------SH-HHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHCc--------CH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 567888877631 23 4789999999999999998764
No 15
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=51.03 E-value=48 Score=24.75 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006502 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (643)
Q Consensus 86 ~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArkfDvekA~k~L~~ 131 (643)
+.|++|++.. |. .+. ..+.+-|.++++|++.|+.+|-+
T Consensus 3 ~~v~~L~~mF---P~----~~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMF---PD----LDR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHS---SS----S-H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC---CC----CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566677665 22 344 47889999999999999998754
No 16
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=45.11 E-value=57 Score=24.40 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006502 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (643)
Q Consensus 86 ~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArkfDvekA~k~L~~ 131 (643)
+.+++|++.. |. .++ ..+.+-|+++++|++.|+..|-+
T Consensus 4 ~~v~~L~~mF------P~-l~~-~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMF------PN-LDE-EVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566666654 32 344 37889999999999999988753
No 17
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.43 E-value=1.3e+02 Score=34.36 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=51.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 556 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLH--AAV-----CRVDALEAELIATKKALHEALMRQEDLLAYI 628 (643)
Q Consensus 556 ~~~~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~--~~~-----~Rv~~le~~l~~tkkaL~~al~kQ~el~ayi 628 (643)
+..|.+..++-++.+|+.++..|...=...=.|.|+|-+ .++ .+|++-..||......|.+...+...++.-+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999998766666666666643 111 2344555677777777766666555555555
Q ss_pred H
Q 006502 629 D 629 (643)
Q Consensus 629 e 629 (643)
.
T Consensus 136 ~ 136 (472)
T TIGR03752 136 Q 136 (472)
T ss_pred H
Confidence 3
No 18
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=42.54 E-value=87 Score=31.35 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhc-----------CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 557 EVDLLSSVTKRLSELEEKVDTLQ-----------AKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 625 (643)
Q Consensus 557 ~~~~~~~~~~r~~~le~~~~~l~-----------~kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ 625 (643)
+.+++..+-.|+-.||+||+.|. ..--.=|.+|+++ +.-=.||.+||.-+.+-=.+|+-----|.||-
T Consensus 70 Sr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v-~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~ 148 (189)
T TIGR02132 70 TKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDV-TKLKQDIKSLDKKLDKILELLEGQQKTQDELK 148 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHH-HHHHHHHHHHHHHHHHHHHHHhcCccchhHHH
Confidence 35566666666666666665543 2222456666663 55556777887777666555552223334444
Q ss_pred HHHHH
Q 006502 626 AYIDR 630 (643)
Q Consensus 626 ayie~ 630 (643)
+.|.+
T Consensus 149 ~~~~~ 153 (189)
T TIGR02132 149 ETIQK 153 (189)
T ss_pred HHHHH
Confidence 44433
No 19
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=41.09 E-value=1.2e+02 Score=31.17 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHH-----HHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 559 DLLSSVTKRLSELEEK-----VDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDR 630 (643)
Q Consensus 559 ~~~~~~~~r~~~le~~-----~~~l~~kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~ 630 (643)
+.++..+.+|..+++- -+....++.+=+-.+|+=........+-||.||+++++.|+.+-.+=++|.-+.|.
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888861 22233333444444566667777889999999999999998765554555444443
No 20
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=40.21 E-value=1.8e+02 Score=32.88 Aligned_cols=89 Identities=17% Similarity=0.296 Sum_probs=65.5
Q ss_pred CCCCCcEEEEeccccCcchhhhcchHhHHHHHHHHHHHHHHHhhChhhhhhhhCCCCcEEEEEeCCCCCCCCcchH----
Q 006502 168 DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKN---- 243 (643)
Q Consensus 168 DkeGRPV~i~rlg~~d~~kl~~~~t~e~~ik~~v~~~E~~l~~~~pacsi~~~~~i~gitiIIDl~Gvsl~~~~k~---- 243 (643)
|....|++++-+|-..- +.+.|+++++....+ . .--++|++-.|++-..+..+
T Consensus 121 ~~~~~P~vvilpGltg~-------S~~~YVr~lv~~a~~--------------~--G~r~VVfN~RG~~g~~LtTpr~f~ 177 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTGG-------SHESYVRHLVHEAQR--------------K--GYRVVVFNHRGLGGSKLTTPRLFT 177 (409)
T ss_pred CCCCCcEEEEecCCCCC-------ChhHHHHHHHHHHHh--------------C--CcEEEEECCCCCCCCccCCCceee
Confidence 34567999999988553 567899987754321 1 14578999999776665421
Q ss_pred --HHHHHHHHHHHhccCCcccceeEEEEecChHHHHHHHH
Q 006502 244 --ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT 281 (643)
Q Consensus 244 --~~~lik~ilkilqd~YPErL~rI~IINaP~~f~~lWki 281 (643)
-..=++.+++.+...||.+ +++.+-.+.+-.++||-
T Consensus 178 ag~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nY 215 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNY 215 (409)
T ss_pred cCCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHH
Confidence 1356788888899999998 89999999988888883
No 21
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=40.04 E-value=34 Score=32.72 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=52.3
Q ss_pred ccCCCChhhh--hhcccchhhHhhhccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCC
Q 006502 27 SDFENSEDER--RTRIGSLKKKALNASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPER 104 (643)
Q Consensus 27 ~~~~~se~~~--~~~~~~~~~~~~~~s~~~~~sl~k~~~~r~~~~~v~s~~iedl~d~eE~~aL~efRq~L~~~~~LP~~ 104 (643)
.+...-+|++ ..-+.+. ...-....++++.|.+|| .+..+-.-.++++.++++..+...+..........+.
T Consensus 53 ~~~~~ldD~~~a~~~~~~~-~~~~~g~~~I~~~L~~kG----i~~~~I~~~l~~~~~d~~e~a~~~~~k~~~~~~~~~~- 126 (157)
T PRK00117 53 KEEGLLDDERFAESFVRSR-ARKGYGPRRIRQELRQKG----VDREIIEEALAELDIDWEELARELARKKFRRPLPDDA- 126 (157)
T ss_pred HHcCCCCHHHHHHHHHHHH-HhCCchHHHHHHHHHHcC----CCHHHHHHHHHHcCccHHHHHHHHHHHHcCCCCCCCH-
Confidence 3334556666 2223332 112234567889999998 5555544445554322232223333222211110000
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006502 105 HDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (643)
Q Consensus 105 ~dD~~~LLRFLRArkfDvekA~k~L~~~ 132 (643)
..-.-+.+||..++|+.+.+.+.+.+.
T Consensus 127 -~~k~Ki~~~L~rkGF~~~~I~~~l~~~ 153 (157)
T PRK00117 127 -KEKAKLVRFLARRGFSMDVIQRVLRNA 153 (157)
T ss_pred -HHHHHHHHHHHHCCCCHHHHHHHHHhh
Confidence 112468999999999999888777664
No 22
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.57 E-value=1.3e+02 Score=35.75 Aligned_cols=58 Identities=29% Similarity=0.402 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 559 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEAL 618 (643)
Q Consensus 559 ~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al 618 (643)
..+..+.+++.+||+.++.|..|=...|.+ +-+..-..+++.++.++.+.+..+....
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~~ 448 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEELL 448 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999988877764 2344444555555555555544444433
No 23
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.78 E-value=1.6e+02 Score=31.79 Aligned_cols=73 Identities=30% Similarity=0.330 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 560 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 632 (643)
Q Consensus 560 ~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k 632 (643)
.+-.+..|.+.|++++..|...+.++-..--+-|+++=.++.+++.++.+-|+-|.+.=.+=.++-+-|+..+
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788899999999988887653333445555566666666666555555544444444444444444
No 24
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=36.60 E-value=1.4e+02 Score=28.67 Aligned_cols=68 Identities=26% Similarity=0.291 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCC---chhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 558 VDLLSSVTKRLSELEEKVDTLQAKPSEM---PYEKEELL---HAAVCRVDALEAELIATKKALHEALMRQEDLL 625 (643)
Q Consensus 558 ~~~~~~~~~r~~~le~~~~~l~~kP~~~---p~eke~~l---~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ 625 (643)
...+.++-+|++.||..|+.+..+=.+. ..+.+... -+.-+||..||.||..+-+.|-+|..+=.+.-
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d 107 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREAD 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888777653322 22333322 23567999999999999999999987755543
No 25
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=35.08 E-value=3.1e+02 Score=26.14 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 564 VTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 632 (643)
Q Consensus 564 ~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k 632 (643)
++..-..+|.-++.| +.+...-|+- +.||+.||.|+...-+-|.+++.+=++|++-|+..-
T Consensus 78 Ii~kakqIe~LIdsL----Pg~~~see~Q----~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i 138 (144)
T PF11221_consen 78 IIRKAKQIEYLIDSL----PGIEVSEEEQ----LKRIKELEEENEEAEEELQEAVKEAEELLKQVQELI 138 (144)
T ss_dssp HHHHHHHHHHHHHHS----TTSSS-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666655 3344333332 289999999999999999999999999999887653
No 26
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.27 E-value=3e+02 Score=29.74 Aligned_cols=65 Identities=32% Similarity=0.385 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006502 561 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 634 (643)
Q Consensus 561 ~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~ 634 (643)
+.+.=+.+.+||.+..+. ..|+++|.=| |.+|.-|+.+|...+|++....-.| ||.|=|+..+.+
T Consensus 109 ~~~ler~i~~Le~~~~T~-----~L~~e~E~~l---vq~I~~L~k~le~~~k~~e~~~~~~-el~aei~~lk~~ 173 (294)
T COG1340 109 IKSLEREIERLEKKQQTS-----VLTPEEEREL---VQKIKELRKELEDAKKALEENEKLK-ELKAEIDELKKK 173 (294)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 466678899999998874 4678888766 6778889999999999999988775 556666665543
No 27
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=34.03 E-value=1.7e+02 Score=29.81 Aligned_cols=78 Identities=29% Similarity=0.328 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 558 VDLLSSVTKRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEE 633 (643)
Q Consensus 558 ~~~~~~~~~r~~~le~~~~~l~~kP~~~p----~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~ 633 (643)
...+....+.|.+||++...|-.+=-+.. .+=......|+.-|+.=|..|..-|+||..+--....+-.||++-+.
T Consensus 31 Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d 110 (204)
T PF10368_consen 31 EKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIED 110 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34678889999999999999988753333 44567788999999999999999999999999988888899987764
Q ss_pred hh
Q 006502 634 AK 635 (643)
Q Consensus 634 ~k 635 (643)
.+
T Consensus 111 ~~ 112 (204)
T PF10368_consen 111 EK 112 (204)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 28
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.96 E-value=1.1e+02 Score=24.85 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhcC
Q 006502 567 RLSELEEKVDTLQA 580 (643)
Q Consensus 567 r~~~le~~~~~l~~ 580 (643)
||.|||.++..|.+
T Consensus 1 Ri~elEn~~~~~~~ 14 (55)
T PF05377_consen 1 RIDELENELPRIES 14 (55)
T ss_pred CHHHHHHHHHHHHH
Confidence 34455555544443
No 29
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=31.58 E-value=1.9e+02 Score=35.07 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 006502 569 SELEEKVDTLQAKPSEMPYE---KEELLHAAVCRVDALEAELIATKKALHEALMR-QEDLLAYIDRQE 632 (643)
Q Consensus 569 ~~le~~~~~l~~kP~~~p~e---ke~~l~~~~~Rv~~le~~l~~tkkaL~~al~k-Q~el~ayie~~k 632 (643)
.++++-+..+....-.+|.. -++.+++--.|++.+++++..|++.|.+.+.+ .++|.++-+..+
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 271 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLR 271 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888887777764 46899999999999999999999999987665 345555544444
No 30
>PHA01750 hypothetical protein
Probab=30.00 E-value=2.5e+02 Score=23.79 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006502 591 ELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 634 (643)
Q Consensus 591 ~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~ 634 (643)
.+|.+|+.-| +-+||.--++-++++-.||.+|-+-++..|++
T Consensus 30 q~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5677777644 55777778888888889999988877666544
No 31
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=28.97 E-value=2e+02 Score=36.57 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 006502 561 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEEL---LHAAVCRVDALEAELIATKKAL 614 (643)
Q Consensus 561 ~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~---l~~~~~Rv~~le~~l~~tkkaL 614 (643)
+..-++.++.|+++..++. ++|++ |+..+.+.+..|++|..+++||
T Consensus 443 l~~~~~~~~~~~~~~~~~~--------~~~~~~keL~e~i~~lk~~~~el~~~q~~l 491 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVA--------ELEEMDKELEETIEKLKSEESELQREQKAL 491 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666899999999999998 77777 8899999999999999877776
No 32
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=28.75 E-value=7.5e+02 Score=26.48 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=31.0
Q ss_pred hCCCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHHhccCCcccce
Q 006502 220 KRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLH 264 (643)
Q Consensus 220 ~~~i~gitiIIDl~Gvsl~~~~k~~~~lik~ilkilqd~YPErL~ 264 (643)
..++...-+|+|- |+|+..-......+++.+-.+-.-.||-.++
T Consensus 174 ~~GI~~~~IilDP-GiGF~k~~~~n~~ll~~l~~l~~lg~Pilvg 217 (282)
T PRK11613 174 AAGIAKEKLLLDP-GFGFGKNLSHNYQLLARLAEFHHFNLPLLVG 217 (282)
T ss_pred HcCCChhhEEEeC-CCCcCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3467777899999 6777544445678888887776667885554
No 33
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=28.30 E-value=4.1e+02 Score=27.84 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 565 TKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEAL 618 (643)
Q Consensus 565 ~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al 618 (643)
=..+.-+|+.+..-+. ..+-+..-||||.|..||-.-|++-......-....
T Consensus 97 Ke~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~ 148 (239)
T PF05276_consen 97 KEMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRA 148 (239)
T ss_pred HHHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777887766444 578899999999999999998888877776544443
No 34
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=27.97 E-value=1.9e+02 Score=29.10 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 006502 609 ATKKALHEALMRQ 621 (643)
Q Consensus 609 ~tkkaL~~al~kQ 621 (643)
+|.--|.+|+-||
T Consensus 142 ~~~~~~~~~~~~~ 154 (189)
T TIGR02132 142 KTQDELKETIQKQ 154 (189)
T ss_pred cchhHHHHHHHHH
Confidence 4444555554443
No 35
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=27.28 E-value=1.5e+02 Score=25.71 Aligned_cols=31 Identities=39% Similarity=0.447 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 602 ALEAELIATKKALHEALMRQEDLLAYIDRQE 632 (643)
Q Consensus 602 ~le~~l~~tkkaL~~al~kQ~el~ayie~~k 632 (643)
.++-.|...+..|+++...|.+|++-|++..
T Consensus 11 ~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~ 41 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQELRQSQEELLQQIDRLN 41 (92)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666554
No 36
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.08 E-value=4.4e+02 Score=26.91 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006502 564 VTKRLSELEEKVDTLQAKPSEM-------PYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAK 635 (643)
Q Consensus 564 ~~~r~~~le~~~~~l~~kP~~~-------p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~k 635 (643)
+-.||.+||.++..|..+..++ -.|..+-+.++=.-+..|+.|...-++-|..+-.+-++|-+-++.+++..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444433 22333444455555666666666666666666555555666666666543
No 37
>PRK09039 hypothetical protein; Validated
Probab=26.97 E-value=1.1e+02 Score=33.63 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 006502 500 VMAFFMMFVTLFRSVAYRV 518 (643)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~ 518 (643)
|+.||+.||.+.-+|...-
T Consensus 29 ~~~f~l~~f~~~q~fLs~~ 47 (343)
T PRK09039 29 VIMFLLTVFVVAQFFLSRE 47 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456677777777665543
No 38
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=26.76 E-value=3.3e+02 Score=31.66 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 590 EELLHAAVCRVDALEAELIATKKA 613 (643)
Q Consensus 590 e~~l~~~~~Rv~~le~~l~~tkka 613 (643)
++=|..+-.+|..||.||..|++-
T Consensus 461 ~eeL~~a~~~i~~LqDEL~TTr~N 484 (518)
T PF10212_consen 461 EEELKEANQNISRLQDELETTRRN 484 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345888999999999999999984
No 39
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.46 E-value=2.6e+02 Score=27.54 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=68.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccccccccccccCCCCCCCCcchhhhHH-HHH
Q 006502 487 KTPEGIRARIWAAVMAFFMMFVTLFRSVAYRVTHRIPETSTGHDLNISEVAVDANEKEEFRPPSPSPSLTEVDLLS-SVT 565 (643)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 565 (643)
++...+..++-...+-++.++..++..+...+ +.+..-.. .++ +..-+.+..+.+. .+-
T Consensus 46 ka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l-~~~~~~~~---------~vd----------~~~~a~i~e~~L~~el~ 105 (204)
T PF04740_consen 46 KAYDSIKNYFSEVHIPLLQGLILLLEEYQEAL-KFIKDFQS---------EVD----------SSSNAIIDEDFLESELK 105 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHH---------HHc----------ccccccccHHHHHHHHH
Confidence 34455667777888888888888888777666 33322111 111 0011346677776 667
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 566 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMR 620 (643)
Q Consensus 566 ~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~k 620 (643)
+.|.++++.+..+...-..+-.+=.+++.-..-..+.+...+..+|+-|.+++.+
T Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lek 160 (204)
T PF04740_consen 106 KKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEK 160 (204)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877766554444444554333334455666666666666666655
No 40
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=26.22 E-value=3.4e+02 Score=28.47 Aligned_cols=73 Identities=25% Similarity=0.328 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHhc---------CCCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 562 SSVTKRLSELEEKVDTLQ---------AKPS-EMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 631 (643)
Q Consensus 562 ~~~~~r~~~le~~~~~l~---------~kP~-~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~ 631 (643)
..++.+...+|.+|..|+ +||- +|=..=+++|++.-.||..||+++..+|.--.+||-.-+.|-+-|=.+
T Consensus 145 ~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~ 224 (239)
T PF05276_consen 145 QRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQ 224 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554 3442 344456789999999999999999999999999999999999998666
Q ss_pred HHh
Q 006502 632 EEA 634 (643)
Q Consensus 632 k~~ 634 (643)
...
T Consensus 225 R~~ 227 (239)
T PF05276_consen 225 RRR 227 (239)
T ss_pred Hhh
Confidence 544
No 41
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.14 E-value=3.8e+02 Score=26.97 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=52.8
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 006502 573 EKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHE---ALMRQEDLLAYIDRQEEA 634 (643)
Q Consensus 573 ~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~---al~kQ~el~ayie~~k~~ 634 (643)
|-|++..+||.--+.++..+++...-.-+-+|.-|.++++.|.+ .+.+=.||+.++.+++.+
T Consensus 22 edV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~ 86 (187)
T KOG3313|consen 22 EDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDE 86 (187)
T ss_pred HHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCccc
Confidence 45778889999999999999999999999999999999999986 456667888887766533
No 42
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=25.64 E-value=60 Score=24.94 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 608 IATKKALHEALMRQEDLLAYIDRQE 632 (643)
Q Consensus 608 ~~tkkaL~~al~kQ~el~ayie~~k 632 (643)
+.+|++|+ +-||||.+|...++
T Consensus 13 QsAkqmln---ILQEELssy~~E~~ 34 (44)
T PF13080_consen 13 QSAKQMLN---ILQEELSSYPQEQP 34 (44)
T ss_pred HHHHHHHH---HHHHHHHhchhhcc
Confidence 46788876 67999999997765
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.62 E-value=1.9e+02 Score=33.07 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 558 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 632 (643)
Q Consensus 558 ~~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k 632 (643)
.+.++.+...+.+|++++..|..+=.+.=...++ ++....|+..++.++...+..|++...+..+|-+=|++.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888888887765544444444 7778889999999999988888887776666666665554
No 44
>PRK14137 recX recombination regulator RecX; Provisional
Probab=25.18 E-value=1.5e+02 Score=29.97 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006502 109 HMMLRFLKARKFDIDKAKHMWAEMLQ 134 (643)
Q Consensus 109 ~~LLRFLRArkfDvekA~k~L~~~L~ 134 (643)
.-+.+||..++|+.+.+...+.+.+.
T Consensus 156 ~K~~~~L~rRGFs~~~I~~al~~~~~ 181 (195)
T PRK14137 156 ASAYAFLARRGFSGAVIWPAIREVAA 181 (195)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 46889999999999998888887543
No 45
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.66 E-value=3.4e+02 Score=30.71 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcC--CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 560 LLSSVTKRLSELEEKVDTLQA--KPSEMPYEKEELLHAAVCRVDALEAELIATKKAL 614 (643)
Q Consensus 560 ~~~~~~~r~~~le~~~~~l~~--kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL 614 (643)
.+..+-++|.+|+..+..|.. ++..+|+++.++++........|.++|.+.+.-|
T Consensus 342 ~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 342 ELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777666655 4567888998888877777777776666554433
No 46
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.61 E-value=1.7e+02 Score=25.00 Aligned_cols=51 Identities=20% Similarity=0.466 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcC---CCHHHHHHHHHHHHHHH
Q 006502 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARK---FDIDKAKHMWAEMLQWR 136 (643)
Q Consensus 86 ~aL~efRq~L~~~~~LP~~~dD~~~LLRFLRArk---fDvekA~k~L~~~L~WR 136 (643)
..+.+|-...-.+...|...+|++.+-+||.-.. |++..-=+.|++++.|-
T Consensus 19 d~~~~lAn~af~D~sFPK~t~Df~~is~YLE~~a~f~~~m~~FDeiwe~Yle~~ 72 (74)
T COG4479 19 DDKTELANLAFDDHSFPKHTDDFHEISDYLETNADFLFNMSVFDEIWEEYLEHL 72 (74)
T ss_pred ChHHHHHHHHhhcccCCCCCccHHHHHHHHHhcCCcccchhhHHHHHHHHHHHh
Confidence 3445666677767778998999999999998653 55665667788888774
No 47
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=24.56 E-value=2.5e+02 Score=26.75 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 562 SSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 625 (643)
Q Consensus 562 ~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ 625 (643)
..+.+|+.+.|..+..+...-.+ =..+=.-..+.+.+|+.|-..|.++...|++++.-=+.|-
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~e-rqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN 114 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMVE-RQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLN 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999998888765331 1334445667899999999999999999998875544433
No 48
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=24.40 E-value=2.1e+02 Score=28.44 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q 006502 559 DLLSSVTKRLSELEEKV 575 (643)
Q Consensus 559 ~~~~~~~~r~~~le~~~ 575 (643)
..+..+=+||++||..|
T Consensus 5 ~~l~~Le~Ri~~LE~~v 21 (174)
T PF07426_consen 5 SALDILEKRIEELERRV 21 (174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677779999999999
No 49
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=24.23 E-value=2.6e+02 Score=29.18 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 006502 561 LSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAELIATK-------KALHEALMRQEDLLAYI 628 (643)
Q Consensus 561 ~~~~~~r~~~le~~~~~l~~kP~~~p~ek-----e~~l~~~~~Rv~~le~~l~~tk-------kaL~~al~kQ~el~ayi 628 (643)
-..|++.|+||... ....|+.+-+.+ ..=+.+.+.|+..||..|..-. ..+++...+..+|.+-|
T Consensus 182 r~~~~~~l~el~~r---~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i 258 (268)
T PF13234_consen 182 RKQVLKSLQELLKR---FPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEI 258 (268)
T ss_dssp HHHHHHHHHHHHHH---SSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 44556666666555 233344444432 3445566666666666665543 34556666666666666
Q ss_pred HHHHH
Q 006502 629 DRQEE 633 (643)
Q Consensus 629 e~~k~ 633 (643)
+..|.
T Consensus 259 ~~Lk~ 263 (268)
T PF13234_consen 259 KALKR 263 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 50
>PRK14136 recX recombination regulator RecX; Provisional
Probab=24.15 E-value=93 Score=33.74 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q 006502 108 YHMMLRFLKARKFDIDKAKHMWAE 131 (643)
Q Consensus 108 ~~~LLRFLRArkfDvekA~k~L~~ 131 (643)
..-+.|||..++|+.+...+.|+.
T Consensus 278 k~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 278 RAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHh
Confidence 356789999999999988877764
No 51
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.00 E-value=3.9e+02 Score=29.06 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 560 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVD--------------ALEAELIATKKALHEALMRQEDLL 625 (643)
Q Consensus 560 ~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~--------------~le~~l~~tkkaL~~al~kQ~el~ 625 (643)
.+-.+.+|.+.|+.++..|..-+.+|-.=.-+.|..+-..+. .++.+|..-+..+.+.-.+..|+.
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677889999999999998888773222223333334444 455555555555555555556666
Q ss_pred HHHHHHHH
Q 006502 626 AYIDRQEE 633 (643)
Q Consensus 626 ayie~~k~ 633 (643)
+-|...++
T Consensus 253 ~~I~~ae~ 260 (312)
T smart00787 253 TEIAEAEK 260 (312)
T ss_pred HHHHHHHH
Confidence 65554443
No 52
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=23.06 E-value=6.4e+02 Score=26.94 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 006502 559 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAA 596 (643)
Q Consensus 559 ~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~ 596 (643)
..++-.+-|+..|+..++..+.+-+++.+.++++|-+.
T Consensus 52 ~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l 89 (268)
T PF11802_consen 52 AQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL 89 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH
Confidence 35677889999999999999999999998888877643
No 53
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=23.01 E-value=1.3e+02 Score=30.29 Aligned_cols=31 Identities=48% Similarity=0.490 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 006502 587 YEKEELLHAAVCRVDALEAEL-------IATKKALHEA 617 (643)
Q Consensus 587 ~eke~~l~~~~~Rv~~le~~l-------~~tkkaL~~a 617 (643)
.||-.||.+|=.||+.|...| +.||++-+-+
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999998755 5566655433
No 54
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=22.92 E-value=4.8e+02 Score=31.66 Aligned_cols=38 Identities=32% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 593 LHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDR 630 (643)
Q Consensus 593 l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~ 630 (643)
+++|+.++..|++||+.+||-|.++.---+-|-..+|+
T Consensus 211 rmaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~ 248 (916)
T KOG0249|consen 211 RMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIED 248 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 57999999999999999999998876544444444444
No 55
>PHA00687 hypothetical protein
Probab=22.81 E-value=1.8e+02 Score=22.80 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=21.1
Q ss_pred CCCchhHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 006502 583 SEMPYEKEELLHAA----------VCRVDALEAELIATKK 612 (643)
Q Consensus 583 ~~~p~eke~~l~~~----------~~Rv~~le~~l~~tkk 612 (643)
..+|+|--.+|+.| +.||+++|.--+..|+
T Consensus 9 ttlppeamrllqqaaqtpitradplarvkaiekatervkr 48 (56)
T PHA00687 9 TTLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKR 48 (56)
T ss_pred ccCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Confidence 34788888888765 5788888876555543
No 56
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=22.25 E-value=5.3e+02 Score=29.31 Aligned_cols=75 Identities=29% Similarity=0.368 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCC---CCCCchhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 006502 558 VDLLSSVTKRLSELEEKVDTLQAK---PSEMPYEKEELL----------HAAVCRVDALEAELIATKKALHEA-LMRQED 623 (643)
Q Consensus 558 ~~~~~~~~~r~~~le~~~~~l~~k---P~~~p~eke~~l----------~~~~~Rv~~le~~l~~tkkaL~~a-l~kQ~e 623 (643)
+..+.++||||+.||..-.-|+.| |..-|.---++- .+--.-||-|-+|.+.-++-|-.| ..-|++
T Consensus 200 EalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek 279 (552)
T KOG2129|consen 200 EALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEK 279 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446889999999999887777655 443343333332 112234677777777777776544 556788
Q ss_pred HHHHHHHHH
Q 006502 624 LLAYIDRQE 632 (643)
Q Consensus 624 l~ayie~~k 632 (643)
++-|.+..+
T Consensus 280 ~~qy~~Ee~ 288 (552)
T KOG2129|consen 280 LMQYRAEEV 288 (552)
T ss_pred HHHHHHHHh
Confidence 888875543
No 57
>PF14282 FlxA: FlxA-like protein
Probab=22.19 E-value=4.5e+02 Score=23.82 Aligned_cols=52 Identities=15% Similarity=0.380 Sum_probs=38.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHHHHHH
Q 006502 556 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPY-EKEELLHAAVCRVDALEAELI 608 (643)
Q Consensus 556 ~~~~~~~~~~~r~~~le~~~~~l~~kP~~~p~-eke~~l~~~~~Rv~~le~~l~ 608 (643)
.....+..+-+++.+|.+++..|... ..|+. +|.+....=-.-|..||+.|.
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~-~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQD-SDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999999995 23444 566555555556777777775
No 58
>PF15294 Leu_zip: Leucine zipper
Probab=21.95 E-value=2.3e+02 Score=30.37 Aligned_cols=61 Identities=36% Similarity=0.468 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006502 566 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 637 (643)
Q Consensus 566 ~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~k~~ 637 (643)
+-|.+||.++..|. .|=|.-+++.-.--++||.+|..| +|+-|..|++ |+-.++-=++||+
T Consensus 190 q~l~dLE~k~a~lK-------~e~ek~~~d~~~~~k~L~e~L~~~---KhelL~~Qeq-L~~aekeLekKfq 250 (278)
T PF15294_consen 190 QDLSDLENKMAALK-------SELEKALQDKESQQKALEETLQSC---KHELLRVQEQ-LSLAEKELEKKFQ 250 (278)
T ss_pred cchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchh-hhcchhhHHHHhC
Confidence 55678888888884 344555777777889999999998 5777888888 6666666666765
No 59
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.73 E-value=2.6e+02 Score=27.66 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006502 560 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELL----HAAVCRVDALEAELIATKKALHEALMRQE 622 (643)
Q Consensus 560 ~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l----~~~~~Rv~~le~~l~~tkkaL~~al~kQ~ 622 (643)
.+.+++++|..+|+++..+..+...--..+++.+ ...-.-|+.|+.||.++++-+ ++|-+|-
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~-~~LkkQ~ 184 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI-EALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3567888999999999988877654444444332 222233455555555533222 2455553
No 60
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=21.40 E-value=2.9e+02 Score=29.08 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 006502 618 LMRQEDLLAYIDRQEEAKFRK 638 (643)
Q Consensus 618 l~kQ~el~ayie~~k~~k~~~ 638 (643)
=.-|+-+.+++||.++||-+|
T Consensus 251 ~d~~egi~aflek~~~~~~~~ 271 (278)
T PLN03214 251 PSIIKALGGVMERLSSGKEKK 271 (278)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 345888999999999888543
No 61
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=21.26 E-value=85 Score=30.72 Aligned_cols=96 Identities=15% Similarity=0.237 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccccccccccccCCCCCCCCcchhhh-HHHHHHHHHH
Q 006502 492 IRARIWAAVMAFFMMFVTLFRSVAYRVTHRIPETSTGHDLNISEVAVDANEKEEFRPPSPSPSLTEVDL-LSSVTKRLSE 570 (643)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~ 570 (643)
...+++..+++|++-++-+-+.+..++++-+........ .+ +.+++. -...-+-.++
T Consensus 9 ~~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~-------~~---------------L~~Ae~~k~eAe~l~a~ 66 (155)
T PRK06569 9 YYSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQ-------DN---------------ITQADTLTIEVEKLNKY 66 (155)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------hH---------------HHHHHHHHHHHHHHHHH
Confidence 447788888888888887888777777655543321100 00 001111 1111222344
Q ss_pred HHHHHHHhcCCCCCCchh-HHHHHHHHHHHHHHHHHHHHH
Q 006502 571 LEEKVDTLQAKPSEMPYE-KEELLHAAVCRVDALEAELIA 609 (643)
Q Consensus 571 le~~~~~l~~kP~~~p~e-ke~~l~~~~~Rv~~le~~l~~ 609 (643)
.|+.+..-..+-.+|=.| .+++-.+|..++.++|++|..
T Consensus 67 ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~ 106 (155)
T PRK06569 67 YNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKN 106 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555556566 566666666667777776643
No 62
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.20 E-value=2.7e+02 Score=22.74 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006502 599 RVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 634 (643)
Q Consensus 599 Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~ 634 (643)
||+.||.+|.+.+-.+...=...++|-+-||+.++.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888777777655555557777777777654
No 63
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.52 E-value=1.3e+02 Score=28.34 Aligned_cols=33 Identities=21% Similarity=0.126 Sum_probs=24.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 006502 490 EGIRARIWAAVMAFFMMFVTLFRSVAYRVTHRI 522 (643)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (643)
.+...-|+.||||-|+++..++-++.+|+.|+.
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 345688999999999998888888887777663
No 64
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=20.23 E-value=2.1e+02 Score=28.50 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=24.8
Q ss_pred CCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006502 101 LPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (643)
Q Consensus 101 LP~~~dD~~~LLRFLRArkfDvekA~k~L~~~ 132 (643)
+|....+..-+.|||..++|+.+-+...|...
T Consensus 133 ~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 133 KPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred cCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 44444555689999999999999888877654
No 65
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=20.05 E-value=6.3e+02 Score=28.04 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=41.7
Q ss_pred cCcccccCCCCCCcEEEEeccccCcchhhhcc-hHhHHHHHHHHHHHHHHHhhChhhhhhhhCCCCcEEEEEeCCCCCC
Q 006502 160 YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVT-TMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (643)
Q Consensus 160 ~p~~~~G~DkeGRPV~i~rlg~~d~~kl~~~~-t~e~~ik~~v~~~E~~l~~~~pacsi~~~~~i~gitiIIDl~Gvsl 237 (643)
.||.+.|.|++|++.++.-.|+-|.--.++-. +.+.|-+..+......+. +.. -..-+|||++..+-
T Consensus 205 ~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~----------k~~-l~~~v~VD~SH~ns 272 (349)
T PRK09261 205 APHHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLE----------KAG-LPPRIMIDCSHANS 272 (349)
T ss_pred CCceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH----------HcC-CCCCEEEECCCccc
Confidence 47778899999999999998887765433322 344455544433333221 111 24678999987543
Done!