Query 006502
Match_columns 643
No_of_seqs 325 out of 1584
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 18:03:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006502.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2131-2134//hhsearch_pdb/006502hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 1.0 1 1 436.0 21.5 278 70-353 26-310 (320)
2 1aua_A Phosphatidylinositol tr 1.0 1 1 422.3 22.7 274 72-351 19-293 (296)
3 1olm_A SEC14-like protein 2; l 1.0 1 1 370.7 24.5 248 72-326 1-249 (403)
4 3hx3_A Retinaldehyde-binding p 1.0 1 1 353.2 19.0 236 74-325 46-295 (316)
5 1r5l_A Alpha-TTP, protein (alp 1.0 1 1 338.9 17.1 237 80-338 4-243 (262)
6 3pg7_A Neurofibromin; SEC lipi 1.0 1 1 100.2 6.5 137 156-314 7-144 (256)
7 3peg_A Neurofibromin; SEC14 do 1.0 1 1 89.8 5.0 135 159-315 29-164 (290)
8 1m7k_A Silencer of death domai 1.0 1 1 19.3 5.5 81 550-630 15-97 (99)
9 1pl5_A Regulatory protein SIR4 1.0 1 1 18.7 2.1 41 598-638 95-135 (142)
10 1nyh_A Regulatory protein SIR4 1.0 1 1 18.5 2.2 41 598-638 119-159 (166)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=1.00 E-value=1 Score=436.05 Aligned_cols=278 Identities=36% Similarity=0.634 Sum_probs=249.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 54432246899998999999999998728999999993999999998719998999999999999999809776444200
Q 006502 70 RVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFE 149 (643)
Q Consensus 70 ~v~s~~ied~~d~eE~~aI~eLRe~L~~~~~LP~~~dD~~~LLRFLRArkfDvekA~q~L~~~L~WRke~gid~i~~d~~ 149 (643)
..+++...++ +++|+++|++||++|.+++ ++...||. +||||||||+||+++|.+||+++++||++++++.+..++.
T Consensus 26 ~~~~g~~~~l-t~~q~~~l~~lR~~l~~~~-~~~~~dD~-~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~ 102 (320)
T 3q8g_A 26 NALPGTPGNL-TKEQEEALLQFRSILLEKN-YKERLDDS-TLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYE 102 (320)
T ss_dssp TSCTTSTTCC-CHHHHHHHHHHHHHHHHTT-CCSSCSHH-HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHH
T ss_pred CCCCCCCCCC-CHHHHHHHHHHHHHHHHCC-CCCCCCHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8999888889-9999999999999998669-99888989-9999998828999999999999999998728630000466
Q ss_pred HH------HHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC
Q ss_conf 68------899998305765545799999289994465693101110107689999999999998711714266320787
Q 006502 150 FK------EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHI 223 (643)
Q Consensus 150 ~~------el~ev~k~~p~~~~G~DkeGRPVliirlgk~d~~kl~~~~tie~~ik~~v~~lE~~l~~~~pacsi~~~~~i 223 (643)
++ +...+.++++++++|+|++||||+|+++|++|+.++.+.++.+++++++++.+|.+++.++++|+...+..+
T Consensus 103 ~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~v 182 (320)
T 3q8g_A 103 NNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLI 182 (320)
T ss_dssp HTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCC
T ss_pred CCCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 65222115789999748863467799969899995054677886415899999999999999999986268787528874
Q ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHCCEEECCCCCHH
Q ss_conf 86799996889997775347999999999996147865421689993585799999999711891001126882875046
Q 006502 224 DSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQS 303 (643)
Q Consensus 224 egitiIIDl~Gvsl~~l~k~~~~lik~i~kilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~ilg~~~~~ 303 (643)
+++++|+|++|+++++++.. +++++.+++++|+|||+||+++||||+|++|+.+|++++|||+++|++||+|+++++.+
T Consensus 183 e~~~~IiD~~g~sl~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~ 261 (320)
T 3q8g_A 183 ETSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKK 261 (320)
T ss_dssp CCEEEEEECTTCCHHHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHH
T ss_pred CEEEEEEECCCCCHHHHHHH-HHHHHHHHHHHHHHCCHHHCEEEEECCCHHHHHHHHHHHHHCCHHHHHHEEEECCCCHH
T ss_conf 10599997999987777889-99999999998852746336278987988999999999974799876108896887679
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 89810288997522699656678-899756899989987899987439986
Q 006502 304 KLLEIIDARELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILKMVLNGGAP 353 (643)
Q Consensus 304 ~L~e~Id~d~LP~elGGt~~~~~-~ggcl~~~~gpW~dp~i~k~v~~~~~~ 353 (643)
.|.++||+++||++|||+++|++ +|||+.++.|||+||++++ .+|++.
T Consensus 262 ~L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~--~~~~~~ 310 (320)
T 3q8g_A 262 ELLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG--PEGEIP 310 (320)
T ss_dssp HHHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC--TTCCCC
T ss_pred HHHHHCCHHHCCHHHCCCCCCCCCCCCEECCCCCCCCCHHHCC--CCCCCC
T ss_conf 9985689633976549998787889981457888888833338--887657
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=1.00 E-value=1 Score=422.31 Aligned_cols=274 Identities=36% Similarity=0.665 Sum_probs=245.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 43224689999899999999999872899999999399999999871999899999999999999980977644420068
Q 006502 72 SSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFK 151 (643)
Q Consensus 72 ~s~~ied~~d~eE~~aI~eLRe~L~~~~~LP~~~dD~~~LLRFLRArkfDvekA~q~L~~~L~WRke~gid~i~~d~~~~ 151 (643)
++....++ +++|+++|++||++|.+++ ++...||. +|||||||++||+++|.++++++++||++++++.+..++...
T Consensus 19 ~~~~~~~l-~~~q~~~l~~lr~~l~~~~-~~~~~dd~-~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~ 95 (296)
T 1aua_A 19 LPGTPGNL-DSAQEKALAELRKLLEDAG-FIERLDDS-TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYD 95 (296)
T ss_dssp CTTSTTTC-CTTHHHHHHHHHHHHHHTT-CCSSCSHH-HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCT
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHHCC-CCCCCCHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
T ss_conf 89988999-9999999999999998659-98878669-999999974799999999999999999981930433134667
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEE
Q ss_conf 89999830576554579999928999446569310111010768999999999999871171426632078786799996
Q 006502 152 EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILD 231 (643)
Q Consensus 152 el~ev~k~~p~~~~G~DkeGRPVliirlgk~d~~kl~~~~tie~~ik~~v~~lE~~l~~~~pacsi~~~~~iegitiIID 231 (643)
+...+.++++++++|+|++||||+|+++|++|+.++.+..+.+++++++++.+|.+++.++++|+...+..++++++|+|
T Consensus 96 ~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D 175 (296)
T 1aua_A 96 EKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMD 175 (296)
T ss_dssp THHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred CHHHHHHHCCCEECCCCCCCCEEEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 67999985774111208897979999505678688642589999999999999999999999888744997303799997
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHCCEEECCCCCHHHHHHHCCC
Q ss_conf 88999777534799999999999614786542168999358579999999971189100112688287504689810288
Q 006502 232 VQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDA 311 (643)
Q Consensus 232 l~Gvsl~~l~k~~~~lik~i~kilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~ilg~~~~~~L~e~Id~ 311 (643)
++|+++++++.. .++++.+++++|+|||+||+++||||+|++|+++|+++||||+++|++||+|+++++.+.|.++||+
T Consensus 176 ~~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~ 254 (296)
T 1aua_A 176 LKGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPA 254 (296)
T ss_dssp CTTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCS
T ss_pred CCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHCCHHHCCEEEEECCCCHHHHHHHCCH
T ss_conf 999987788999-9999999999987689862738999853899999999986359744050899486518999956897
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 997522699656678-8997568999899878999874399
Q 006502 312 RELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILKMVLNGG 351 (643)
Q Consensus 312 d~LP~elGGt~~~~~-~ggcl~~~~gpW~dp~i~k~v~~~~ 351 (643)
++||++|||+++|++ +|||+.++.|||++|++++ ..|+
T Consensus 255 ~~LP~~yGG~~~~~~~~~g~~~~~~~~w~~~~~~~--~~~~ 293 (296)
T 1aua_A 255 ENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYIG--PEGE 293 (296)
T ss_dssp SSSBGGGTSCBCCCGGGCCSTTCCCSGGGCGGGCC--TTCC
T ss_pred HHCCHHHCCCCCCCCCCCCCEECCCCCCCCHHHCC--CCCC
T ss_conf 55938739988788888872257889878734326--5687
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=1.00 E-value=1 Score=370.69 Aligned_cols=248 Identities=30% Similarity=0.470 Sum_probs=217.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 4322468999989999999999987289-999999939999999987199989999999999999998097764442006
Q 006502 72 SSVSIEDVRDVEELQAVDAFRQSLIMDE-LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (643)
Q Consensus 72 ~s~~ied~~d~eE~~aI~eLRe~L~~~~-~LP~~~dD~~~LLRFLRArkfDvekA~q~L~~~L~WRke~gid~i~~d~~~ 150 (643)
||+...++ +++|+++|++||++|.... ++| ..|| .+||||||||+||+++|.+||+++++||++++++.+... ..
T Consensus 1 ~~g~~~~l-~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~ 76 (403)
T 1olm_A 1 MSGRVGDL-SPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QP 76 (403)
T ss_dssp CCSBTTBC-CHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CC
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCC-CCCH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CC
T ss_conf 98975679-99999999999999986446889-9974-688999984689999999999999999997398710036-98
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEE
Q ss_conf 88999983057655457999992899944656931011101076899999999999987117142663207878679999
Q 006502 151 KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSIL 230 (643)
Q Consensus 151 ~el~ev~k~~p~~~~G~DkeGRPVliirlgk~d~~kl~~~~tie~~ik~~v~~lE~~l~~~~pacsi~~~~~iegitiII 230 (643)
++ .+.++++++++|+|++||||+|+++|++|+.++++..+.+++++++++.+|.++..... ++...+++++++++|+
T Consensus 77 ~~--~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~-~s~~~g~~v~~~~~I~ 153 (403)
T 1olm_A 77 PE--VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAH-QTTKLGRKVETITIIY 153 (403)
T ss_dssp CH--HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-HHHHHTSCCCCEEEEE
T ss_pred HH--HHHHHCCCEEECCCCCCCEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCEEEEE
T ss_conf 79--99985885352248996979999137778678641489999999999999999999776-4786198656469999
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHCCEEECCCCCHHHHHHHCC
Q ss_conf 68899977753479999999999961478654216899935857999999997118910011268828750468981028
Q 006502 231 DVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIID 310 (643)
Q Consensus 231 Dl~Gvsl~~l~k~~~~lik~i~kilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~ilg~~~~~~L~e~Id 310 (643)
|++|++++++.++.+++++.+++++|+|||+||+++||||+|++|+++|+++||||+++|++||+|+++++.+.|.++||
T Consensus 154 D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~ 233 (403)
T 1olm_A 154 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHIS 233 (403)
T ss_dssp ECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEEEECCHHHHHHHHHHHHHCCHHHHCEEEEECHHHHHHHHHHCC
T ss_conf 89999888876689999999999988629175474999918788999999987643875442099978468999986569
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 8997522699656678
Q 006502 311 ARELPEFLGGTCNCAD 326 (643)
Q Consensus 311 ~d~LP~elGGt~~~~~ 326 (643)
+++||++|||++++++
T Consensus 234 ~~~LP~~yGG~~~~~~ 249 (403)
T 1olm_A 234 PDQVPVEYGGTMTDPD 249 (403)
T ss_dssp GGGSBGGGTSSBCCTT
T ss_pred HHHCCHHHCCCCCCCC
T ss_conf 6459465399867889
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=1.00 E-value=1 Score=353.17 Aligned_cols=236 Identities=20% Similarity=0.330 Sum_probs=202.2
Q ss_pred CCCCCCCCHH--HHHHHHHHHHHHHHCCCCC-----------CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 2246899998--9999999999987289999-----------99993999999998719998999999999999999809
Q 006502 74 VSIEDVRDVE--ELQAVDAFRQSLIMDELLP-----------ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFG 140 (643)
Q Consensus 74 ~~ied~~d~e--E~~aI~eLRe~L~~~~~LP-----------~~~dD~~~LLRFLRArkfDvekA~q~L~~~L~WRke~g 140 (643)
.+.+++++.+ .+++|++||+||.+++++| .+.|| .+|+||||||+||+++|.+++.++++||++++
T Consensus 46 ~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~ 124 (316)
T 3hx3_A 46 KAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYP 124 (316)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99998289868999999999999996887543221001346789988-99999998747999999999999999998591
Q ss_pred CCCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 7764442006889999830-576554579999928999446569310111010768999999999999871171426632
Q 006502 141 VDTIMEDFEFKEINEVLSY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAA 219 (643)
Q Consensus 141 id~i~~d~~~~el~ev~k~-~p~~~~G~DkeGRPVliirlgk~d~~kl~~~~tie~~ik~~v~~lE~~l~~~~pacsi~~ 219 (643)
. ++.+..++++..+.+. ++.+++|+|++||||+|+++|++|+.+ .+.+++++++++.+|.++.. .
T Consensus 125 ~--~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~----~~~~~~~r~~~~~lE~~l~~--------~ 190 (316)
T 3hx3_A 125 E--LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQE----ITFDEILQAYCFILEKLLEN--------E 190 (316)
T ss_dssp G--GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTT----SCHHHHHHHHHHHHHHHTTS--------H
T ss_pred H--HHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHC--------C
T ss_conf 5--41179989999999749812268879998979998335688988----99999999999999999866--------4
Q ss_pred HCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHCCEEECCC
Q ss_conf 07878679999688999777534799999999999614786542168999358579999999971189100112688287
Q 006502 220 KRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN 299 (643)
Q Consensus 220 ~~~iegitiIIDl~Gvsl~~l~k~~~~lik~i~kilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~ilg~ 299 (643)
..+++|+++|+|++|++++++.......++.+++++|+|||+||+++||||+|++|.++|+++||||+++|++||+|+++
T Consensus 191 ~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~ 270 (316)
T 3hx3_A 191 ETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD 270 (316)
T ss_dssp HHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET
T ss_pred CCCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHCCHHHHHHEEEECC
T ss_conf 67833189999899998788535885899999999987531654238999299999999999999679986622688279
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 50468981028899752269965667
Q 006502 300 KYQSKLLEIIDARELPEFLGGTCNCA 325 (643)
Q Consensus 300 ~~~~~L~e~Id~d~LP~elGGt~~~~ 325 (643)
++ +.|.++||+++||++|||++++.
T Consensus 271 ~~-~~L~~~I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 271 DL-SGFYQEIDENILPSDFGGTLPKY 295 (316)
T ss_dssp CC-HHHHHHSCGGGSBGGGTSSBCCC
T ss_pred CH-HHHHHHCCHHHCCHHHCCCCCCC
T ss_conf 99-99985499755958649999986
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=1.00 E-value=1 Score=338.95 Aligned_cols=237 Identities=24% Similarity=0.340 Sum_probs=199.4
Q ss_pred CCHHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 99989999999999987289--9999999399999999871999899999999999999980977644420068899998
Q 006502 80 RDVEELQAVDAFRQSLIMDE--LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVL 157 (643)
Q Consensus 80 ~d~eE~~aI~eLRe~L~~~~--~LP~~~dD~~~LLRFLRArkfDvekA~q~L~~~L~WRke~gid~i~~d~~~~el~ev~ 157 (643)
+++.|+++|++||+++.+++ ++|...||. +|+|||||++||+++|.+++.++++||++++. +..+..+.++....
T Consensus 4 ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd~-~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 4 MSPLLQPGLAALRRRAREAGVPLAPLPLTDS-FLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLL 80 (262)
T ss_dssp -----CTTHHHHHHHHHHHTCCCSSSCCCHH-HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH--HHHCCCHHHHHHHH
T ss_conf 6689999999999999858766478999989-99999884789999999999999999986948--55249959999999
Q ss_pred HH-CCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 30-57655457999992899944656931011101076899999999999987117142663207878679999688999
Q 006502 158 SY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (643)
Q Consensus 158 k~-~p~~~~G~DkeGRPVliirlgk~d~~kl~~~~tie~~ik~~v~~lE~~l~~~~pacsi~~~~~iegitiIIDl~Gvs 236 (643)
+. ++.+++|+|++||||+|+++|++|+.+ .+.+++++++++.+|.++.. ...++.|+++|+|++|++
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~----~~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~s 148 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKV----FTAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQ 148 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTT----SCHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCC
T ss_pred HCCCCCCCCCCCCCCCEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHC--------HHHCCCCEEEEEECCCCC
T ss_conf 868806799869998989998566467555----78999999999999999747--------553366059999799888
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHCCEEECCCCCHHHHHHHCCCCCCCC
Q ss_conf 77753479999999999961478654216899935857999999997118910011268828750468981028899752
Q 006502 237 LKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 316 (643)
Q Consensus 237 l~~l~k~~~~lik~i~kilqd~YPErL~rI~IINaP~~f~~lWkiVKpFLdpkTr~KI~ilg~~~~~~L~e~Id~d~LP~ 316 (643)
++++.+...+.++.+++++|+|||+||+++||||+|++|+++|++++|||+++|++||+|+++++.+.|.++|| ++||+
T Consensus 149 ~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 149 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCHHHCEEEEEECCHHHHHHHHHHHHHCCHHHHHHEEEECCCCHHHHHHHHH-HHCCH
T ss_conf 99886269999999999998627963434789938889999999999845899784267857871889998865-53917
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2699656678899756899989
Q 006502 317 FLGGTCNCADQGGCLRSDKGPW 338 (643)
Q Consensus 317 elGGt~~~~~~ggcl~~~~gpW 338 (643)
+|||++.. +.....+|
T Consensus 228 ~yGG~~~~------~~~~~~~w 243 (262)
T 1r5l_A 228 EYGGEEFS------MEDICQEW 243 (262)
T ss_dssp GGTCSSCC------HHHHHHHH
T ss_pred HHCCCCCC------HHHHHHHH
T ss_conf 42999988------78899999
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=1.00 E-value=1 Score=100.19 Aligned_cols=137 Identities=13% Similarity=0.147 Sum_probs=108.9
Q ss_pred HHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 98305765545799999289994465693101110107689999999999998711714266320787867999968899
Q 006502 156 VLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV 235 (643)
Q Consensus 156 v~k~~p~~~~G~DkeGRPVliirlgk~d~~kl~~~~tie~~ik~~v~~lE~~l~~~~pacsi~~~~~iegitiIIDl~Gv 235 (643)
+.+....+..|.|++||||+++..++.+.+. ..++.++.|.+..++..+ .....+|+|+.|.
T Consensus 7 i~~~~ify~~G~d~dGrpViv~~~~~l~~~~----~D~e~Ll~~vl~tl~~~~--------------~~~y~lV~d~T~~ 68 (256)
T 3pg7_A 7 LKTLSIFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHT 68 (256)
T ss_dssp HHHHTSEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTC
T ss_pred HHHCCCEEECCCCCCCCEEEEEEEECCCCCC----CCHHHHHHHHHHHHHHHC--------------CCCEEEEEECCCC
T ss_conf 9876978974768999989999966388878----899999999999988865--------------7984999988888
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHH-HHHCCCHHHHCCEEECCCCCHHHHHHHCCCCCC
Q ss_conf 9777534799999999999614786542168999358579999999-971189100112688287504689810288997
Q 006502 236 GLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT-VKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (643)
Q Consensus 236 sl~~l~k~~~~lik~i~kilqd~YPErL~rI~IINaP~~f~~lWki-VKpFLdpkTr~KI~ilg~~~~~~L~e~Id~d~L 314 (643)
+..+.+. .+.++.+..++...|...|+++||+|++++|+..|+. .++|.+.+...|++++++ ..+|.++|+.++|
T Consensus 69 ~~~n~p~--~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 69 GPSNRFK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp CGGGCCC--HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred CCCCCCC--HHHHHHHHHHCCHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCEEEECC--HHHHHHHCCHHHC
T ss_conf 8466875--99999999975999884066899999998999999997421454245872899799--8999863699775
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=1.00 E-value=1 Score=89.77 Aligned_cols=135 Identities=13% Similarity=0.143 Sum_probs=104.8
Q ss_pred HCCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 05765545799999289994465693101110107689999999999998711714266320787867999968899977
Q 006502 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLK 238 (643)
Q Consensus 159 ~~p~~~~G~DkeGRPVliirlgk~d~~kl~~~~tie~~ik~~v~~lE~~l~~~~pacsi~~~~~iegitiIIDl~Gvsl~ 238 (643)
....+..|.|++||||+++.+++.+.+. ..++.++-+.+..++..+ ....++|+|+.|.+..
T Consensus 29 ~~~f~~~g~d~dG~PViv~~~~~~~~~~----~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~ 90 (290)
T 3peg_A 29 LSIFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPS 90 (290)
T ss_dssp TTTEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGG
T ss_pred CCEEEEECCCCCCCEEEEEEEECCCCCC----CCHHHHHHHHHHHHHHHC--------------CCCEEEEEECCCCCCC
T ss_conf 7769992668899879999811177667----899999999999988755--------------7984999986788856
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHH-HHHHHCCCHHHHCCEEECCCCCHHHHHHHCCCCCCC
Q ss_conf 75347999999999996147865421689993585799999-999711891001126882875046898102889975
Q 006502 239 NFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELP 315 (643)
Q Consensus 239 ~l~k~~~~lik~i~kilqd~YPErL~rI~IINaP~~f~~lW-kiVKpFLdpkTr~KI~ilg~~~~~~L~e~Id~d~LP 315 (643)
+-+. .+.++.+..++...|+..++++||+|++++|+..+ ...++|...+...|+.++..- ..|..+++.+++-
T Consensus 91 n~p~--~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~~ 164 (290)
T 3peg_A 91 NRFK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQK 164 (290)
T ss_dssp GCCC--HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC-----------
T ss_pred CCCH--HHHHHHHHHHCCHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCH--HHHHHHCCHHHHC
T ss_conf 7870--999999999779999840468999999989999999987651043157538974887--9987637897723
No 8
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=1.00 E-value=1 Score=19.28 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 9999853035598999999999999888328999996138-99999999778889999999-999999999977999999
Q 006502 550 SPSPSLTEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEK-EELLHAAVCRVDALEAELIA-TKKALHEALMRQEDLLAY 627 (643)
Q Consensus 550 ~~~~~~~~~~~~~~~~~r~~~le~~~~~l~~kP~~~p~ek-e~~l~~~~~Rv~~le~~l~~-tkkaL~~al~kQ~el~ay 627 (643)
+|.+....-..+..+...+.+|+..|..+..++.+--+.+ +|||.--+=..|++|.+=.. .+-+=-+++-+=..++.+
T Consensus 15 ~~~~~~~~~~kI~~I~~ev~~L~~~V~~f~G~k~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~Vk~iQ~~l~~ 94 (99)
T 1m7k_A 15 SDESTPPSIKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEK 94 (99)
T ss_dssp ----CCCSHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89777868999999999999999999998688507999999999999999877818688599999999999999999999
Q ss_pred HHH
Q ss_conf 999
Q 006502 628 IDR 630 (643)
Q Consensus 628 ie~ 630 (643)
+|.
T Consensus 95 LD~ 97 (99)
T 1m7k_A 95 LEK 97 (99)
T ss_dssp HHH
T ss_pred HHC
T ss_conf 864
No 9
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=1.00 E-value=1 Score=18.72 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77888999999999999999997799999999999963100
Q 006502 598 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFRK 638 (643)
Q Consensus 598 ~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~k~~~ 638 (643)
-||-+|.-+|.-|||.|+.|-.+--|--|-|.+.-++.|+.
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklmekdfqv 135 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQV 135 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 03443035144689999878866305557899999886402
No 10
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=1.00 E-value=1 Score=18.53 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77888999999999999999997799999999999963100
Q 006502 598 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFRK 638 (643)
Q Consensus 598 ~Rv~~le~~l~~tkkaL~~al~kQ~el~ayie~~k~~k~~~ 638 (643)
-||-+|.-+|.-|||.|+.|-.+--|--|-|.+.-++.|+.
T Consensus 119 iritslqgdltftkkclenarsqisekdakinklmekdfqv 159 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQV 159 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 13443035234689999878866305557899999875402
Done!