Query 006503
Match_columns 643
No_of_seqs 327 out of 1331
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 00:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 1.5E-54 3.3E-59 490.8 15.3 407 62-493 100-549 (775)
2 KOG1845 MORC family ATPases [C 99.9 1.7E-26 3.7E-31 263.0 5.4 452 145-639 1-642 (775)
3 PF13589 HATPase_c_3: Histidin 99.7 2E-17 4.4E-22 154.7 5.6 91 110-204 4-97 (137)
4 PRK05218 heat shock protein 90 99.7 1E-15 2.2E-20 175.0 18.8 105 87-203 14-144 (613)
5 PRK14083 HSP90 family protein; 99.6 6.8E-14 1.5E-18 159.3 17.7 105 86-203 10-129 (601)
6 PTZ00130 heat shock protein 90 99.5 8.1E-13 1.8E-17 153.2 18.6 105 87-203 76-205 (814)
7 COG0326 HtpG Molecular chapero 99.5 7.1E-13 1.5E-17 149.4 16.6 98 99-205 24-146 (623)
8 PRK00095 mutL DNA mismatch rep 99.4 3.2E-12 6.8E-17 146.7 19.3 89 107-203 21-116 (617)
9 COG0323 MutL DNA mismatch repa 99.4 2E-12 4.4E-17 148.5 16.7 89 107-203 22-117 (638)
10 TIGR00585 mutl DNA mismatch re 99.4 6.2E-12 1.4E-16 132.9 16.2 87 107-201 21-114 (312)
11 PTZ00272 heat shock protein 83 99.4 1.9E-11 4.1E-16 141.3 19.0 95 99-202 22-140 (701)
12 COG1389 DNA topoisomerase VI, 98.9 1.1E-08 2.3E-13 111.8 11.2 96 108-204 36-140 (538)
13 KOG1979 DNA mismatch repair pr 98.6 2.8E-08 6.2E-13 110.7 5.7 90 107-204 26-122 (694)
14 COG3290 CitA Signal transducti 98.6 6.5E-08 1.4E-12 108.0 7.1 94 104-202 424-520 (537)
15 KOG0019 Molecular chaperone (H 98.6 7.6E-08 1.6E-12 108.0 7.2 90 112-204 61-173 (656)
16 PRK05559 DNA topoisomerase IV 98.6 7.5E-08 1.6E-12 111.2 6.5 122 71-203 5-140 (631)
17 KOG1978 DNA mismatch repair pr 98.5 1.7E-07 3.7E-12 106.6 6.4 88 107-202 19-113 (672)
18 PF02518 HATPase_c: Histidine 98.5 2.2E-07 4.7E-12 82.4 5.9 92 109-203 6-100 (111)
19 smart00433 TOP2c Topoisomerase 98.4 8E-07 1.7E-11 102.2 9.3 86 112-203 5-104 (594)
20 PRK14868 DNA topoisomerase VI 98.4 5.6E-07 1.2E-11 104.4 7.9 95 107-203 45-148 (795)
21 KOG0020 Endoplasmic reticulum 98.3 5E-07 1.1E-11 99.2 5.9 91 112-205 99-218 (785)
22 PRK05644 gyrB DNA gyrase subun 98.3 5.9E-07 1.3E-11 104.0 6.8 121 71-203 5-140 (638)
23 PRK04184 DNA topoisomerase VI 98.3 1E-06 2.2E-11 99.7 8.0 96 109-204 37-142 (535)
24 TIGR01052 top6b DNA topoisomer 98.3 1.3E-06 2.8E-11 98.0 8.2 96 107-203 27-131 (488)
25 TIGR01055 parE_Gneg DNA topois 98.3 7.8E-07 1.7E-11 102.7 6.4 107 86-203 12-133 (625)
26 PRK14867 DNA topoisomerase VI 98.1 4.9E-06 1.1E-10 96.1 8.0 93 110-203 38-139 (659)
27 TIGR01059 gyrB DNA gyrase, B s 98.1 4.5E-06 9.7E-11 97.1 6.6 110 86-203 9-133 (654)
28 PRK10364 sensor protein ZraS; 98.0 7.5E-06 1.6E-10 89.8 7.1 91 107-202 347-437 (457)
29 PRK14939 gyrB DNA gyrase subun 98.0 8.2E-06 1.8E-10 95.8 6.7 110 86-203 15-140 (756)
30 KOG1977 DNA mismatch repair pr 97.8 1.5E-05 3.2E-10 91.0 4.9 84 111-203 24-114 (1142)
31 PRK11086 sensory histidine kin 97.8 4.1E-05 8.9E-10 84.7 8.5 90 109-202 434-524 (542)
32 PRK10604 sensor protein RstB; 97.8 4.7E-05 1E-09 83.5 7.7 91 108-203 319-413 (433)
33 TIGR02938 nifL_nitrog nitrogen 97.7 6E-05 1.3E-09 81.2 7.7 92 109-204 388-485 (494)
34 PRK09303 adaptive-response sen 97.7 8.7E-05 1.9E-09 80.3 8.7 94 108-204 272-368 (380)
35 PRK15053 dpiB sensor histidine 97.7 7.1E-05 1.5E-09 83.7 7.9 90 109-202 433-528 (545)
36 PRK11360 sensory histidine kin 97.7 6.7E-05 1.5E-09 82.7 6.9 89 109-202 501-590 (607)
37 smart00387 HATPase_c Histidine 97.7 0.00017 3.7E-09 60.9 7.5 90 109-201 6-98 (111)
38 PRK11006 phoR phosphate regulo 97.6 9.7E-05 2.1E-09 80.6 7.1 93 108-203 317-413 (430)
39 PRK09470 cpxA two-component se 97.6 0.00012 2.5E-09 79.4 7.6 91 108-203 353-447 (461)
40 cd00075 HATPase_c Histidine ki 97.6 0.00017 3.7E-09 59.9 6.8 88 111-201 3-93 (103)
41 TIGR01386 cztS_silS_copS heavy 97.6 0.00011 2.3E-09 79.3 6.7 89 108-199 353-445 (457)
42 PRK09467 envZ osmolarity senso 97.6 0.00016 3.4E-09 78.2 8.0 90 108-203 331-423 (435)
43 COG0642 BaeS Signal transducti 97.6 0.00012 2.6E-09 73.2 6.4 89 107-201 227-317 (336)
44 PRK10755 sensor protein BasS/P 97.6 9.9E-05 2.1E-09 78.0 5.7 90 107-202 246-338 (356)
45 COG0187 GyrB Type IIA topoisom 97.5 5.5E-05 1.2E-09 86.3 3.3 111 86-203 14-139 (635)
46 PRK11073 glnL nitrogen regulat 97.5 0.00017 3.7E-09 75.5 6.7 92 108-201 237-336 (348)
47 PRK11100 sensory histidine kin 97.5 0.0002 4.4E-09 77.4 7.3 94 107-203 367-463 (475)
48 TIGR02916 PEP_his_kin putative 97.5 0.00014 3E-09 84.7 5.8 90 109-203 580-670 (679)
49 PRK10549 signal transduction h 97.4 0.00023 5E-09 77.5 6.8 93 108-203 352-448 (466)
50 PRK10815 sensor protein PhoQ; 97.4 0.00029 6.3E-09 79.0 7.2 87 109-203 379-468 (485)
51 TIGR02966 phoR_proteo phosphat 97.4 0.00039 8.4E-09 71.0 7.4 94 107-203 228-325 (333)
52 PRK13837 two-component VirA-li 97.4 0.00036 7.7E-09 83.1 8.1 89 108-202 560-664 (828)
53 PLN03237 DNA topoisomerase 2; 97.3 0.0008 1.7E-08 83.5 9.7 87 110-201 79-180 (1465)
54 PRK15347 two component system 97.1 0.00082 1.8E-08 79.9 7.4 89 108-203 513-604 (921)
55 TIGR03785 marine_sort_HK prote 97.1 0.001 2.2E-08 78.2 7.8 92 108-202 597-692 (703)
56 PRK10490 sensor protein KdpD; 97.1 0.00077 1.7E-08 81.3 6.8 92 108-203 778-872 (895)
57 PTZ00109 DNA gyrase subunit b; 97.1 0.00022 4.7E-09 84.8 2.0 119 73-203 99-272 (903)
58 TIGR01058 parE_Gpos DNA topois 97.1 0.00062 1.3E-08 79.3 5.4 110 86-203 13-137 (637)
59 PRK11107 hybrid sensory histid 97.1 0.0012 2.7E-08 78.2 8.0 95 108-204 408-509 (919)
60 PRK11091 aerobic respiration c 97.1 0.00098 2.1E-08 78.4 7.0 93 108-203 398-495 (779)
61 COG4191 Signal transduction hi 97.0 0.00075 1.6E-08 76.8 5.6 88 111-203 500-591 (603)
62 PRK11466 hybrid sensory histid 97.0 0.0013 2.9E-08 78.4 7.9 90 107-203 560-652 (914)
63 PRK10618 phosphotransfer inter 97.0 0.0012 2.6E-08 79.7 7.5 94 109-204 566-663 (894)
64 TIGR02956 TMAO_torS TMAO reduc 97.0 0.0017 3.6E-08 77.8 8.2 91 108-203 579-673 (968)
65 PRK10547 chemotaxis protein Ch 97.0 0.0016 3.5E-08 76.2 7.8 90 112-203 389-513 (670)
66 PRK10337 sensor protein QseC; 96.9 0.0012 2.7E-08 71.7 6.1 86 108-202 352-440 (449)
67 PRK09835 sensor kinase CusS; P 96.9 0.0017 3.8E-08 70.9 6.8 91 108-201 375-469 (482)
68 PRK13557 histidine kinase; Pro 96.9 0.0021 4.5E-08 70.8 7.2 90 109-202 278-383 (540)
69 PRK09959 hybrid sensory histid 96.8 0.0029 6.2E-08 77.9 8.3 95 108-203 828-926 (1197)
70 PRK10841 hybrid sensory kinase 96.7 0.0038 8.3E-08 75.7 7.9 92 108-203 562-657 (924)
71 COG2205 KdpD Osmosensitive K+ 96.5 0.0063 1.4E-07 71.7 7.7 92 108-204 775-870 (890)
72 PRK10600 nitrate/nitrite senso 96.4 0.0042 9.1E-08 70.7 6.0 79 107-203 468-546 (569)
73 TIGR01925 spIIAB anti-sigma F 96.4 0.0095 2.1E-07 55.0 6.8 84 111-202 42-127 (137)
74 PTZ00108 DNA topoisomerase 2-l 96.1 0.006 1.3E-07 76.1 5.5 88 110-202 59-164 (1388)
75 COG0643 CheA Chemotaxis protei 96.1 0.012 2.5E-07 69.7 7.3 91 113-205 437-565 (716)
76 PLN03128 DNA topoisomerase 2; 96.0 0.0089 1.9E-07 73.6 5.8 89 108-201 52-155 (1135)
77 KOG0787 Dehydrogenase kinase [ 95.9 0.021 4.6E-07 62.3 7.5 90 110-201 262-368 (414)
78 PHA02569 39 DNA topoisomerase 95.9 0.0066 1.4E-07 70.5 3.9 83 112-201 49-150 (602)
79 PRK11644 sensory histidine kin 95.7 0.014 3.1E-07 65.9 5.7 72 109-199 411-482 (495)
80 COG4585 Signal transduction hi 95.7 0.015 3.2E-07 62.7 5.5 77 107-202 278-354 (365)
81 COG3850 NarQ Signal transducti 95.4 0.025 5.4E-07 64.1 6.1 78 109-205 482-560 (574)
82 PRK04069 serine-protein kinase 95.2 0.02 4.4E-07 55.2 4.1 85 111-199 45-131 (161)
83 PRK03660 anti-sigma F factor; 95.2 0.054 1.2E-06 50.4 6.8 84 111-202 42-127 (146)
84 PRK13560 hypothetical protein; 95.1 0.021 4.7E-07 66.2 4.5 76 112-200 715-792 (807)
85 TIGR01924 rsbW_low_gc serine-p 94.5 0.035 7.7E-07 53.6 3.7 85 111-199 45-131 (159)
86 COG5000 NtrY Signal transducti 94.1 0.066 1.4E-06 61.7 5.2 90 110-201 602-695 (712)
87 COG3852 NtrB Signal transducti 93.8 0.077 1.7E-06 56.9 4.8 86 111-201 244-343 (363)
88 PF13581 HATPase_c_2: Histidin 93.8 0.086 1.9E-06 47.7 4.5 78 111-197 34-113 (125)
89 PRK10935 nitrate/nitrite senso 93.6 0.13 2.9E-06 57.7 6.7 75 109-203 472-549 (565)
90 COG4192 Signal transduction hi 93.5 0.13 2.9E-06 57.6 6.2 61 111-172 567-627 (673)
91 COG2972 Predicted signal trans 92.9 0.096 2.1E-06 58.7 4.1 84 111-203 353-442 (456)
92 COG4251 Bacteriophytochrome (l 92.3 0.25 5.4E-06 57.3 6.3 88 111-202 639-730 (750)
93 PRK13559 hypothetical protein; 91.6 0.37 8.1E-06 51.0 6.4 77 110-201 269-348 (361)
94 COG5002 VicK Signal transducti 90.3 0.47 1E-05 51.9 5.6 88 111-201 345-436 (459)
95 COG3851 UhpB Signal transducti 90.3 0.62 1.3E-05 51.2 6.4 97 86-201 388-484 (497)
96 COG2172 RsbW Anti-sigma regula 89.5 0.43 9.4E-06 45.9 4.2 81 111-201 43-128 (146)
97 COG3920 Signal transduction hi 84.0 1.3 2.9E-05 45.3 4.5 46 112-157 126-173 (221)
98 PF14501 HATPase_c_5: GHKL dom 83.3 2.2 4.7E-05 37.6 5.0 42 111-154 8-51 (100)
99 TIGR02894 DNA_bind_RsfA transc 80.0 10 0.00022 37.4 8.6 61 582-642 98-158 (161)
100 COG4564 Signal transduction hi 76.8 4.6 0.0001 44.2 5.7 79 111-203 358-438 (459)
101 PRK14141 heat shock protein Gr 72.2 4.5 9.8E-05 41.4 4.1 40 599-638 28-67 (209)
102 COG3275 LytS Putative regulato 72.0 3.2 6.9E-05 47.2 3.2 45 112-158 460-507 (557)
103 PF08826 DMPK_coil: DMPK coile 69.4 18 0.00038 30.3 6.2 39 585-623 22-60 (61)
104 PRK14143 heat shock protein Gr 69.2 7.9 0.00017 40.4 5.2 37 604-640 69-105 (238)
105 KOG4571 Activating transcripti 68.1 10 0.00023 40.5 5.8 42 592-637 252-293 (294)
106 TIGR03752 conj_TIGR03752 integ 67.0 20 0.00043 40.9 8.0 53 581-633 73-133 (472)
107 PRK14148 heat shock protein Gr 66.9 13 0.00028 37.8 5.9 37 602-638 40-76 (195)
108 PF11577 NEMO: NF-kappa-B esse 66.6 27 0.00059 29.8 6.9 48 584-631 20-67 (68)
109 KOG0355 DNA topoisomerase type 66.1 18 0.0004 43.6 7.8 47 109-160 54-102 (842)
110 PRK14147 heat shock protein Gr 65.8 11 0.00023 37.5 5.1 35 605-639 21-55 (172)
111 PF00170 bZIP_1: bZIP transcri 63.8 28 0.00061 28.6 6.5 53 585-637 8-61 (64)
112 PF07888 CALCOCO1: Calcium bin 63.3 17 0.00038 42.2 6.8 54 581-634 143-196 (546)
113 PF07106 TBPIP: Tat binding pr 62.3 11 0.00025 36.7 4.5 56 582-637 73-137 (169)
114 PRK14156 heat shock protein Gr 62.0 15 0.00033 36.7 5.4 38 601-638 26-63 (177)
115 PRK14139 heat shock protein Gr 61.3 16 0.00034 36.9 5.4 35 605-639 35-69 (185)
116 PRK14153 heat shock protein Gr 61.0 16 0.00035 37.1 5.5 36 604-639 35-70 (194)
117 PRK14154 heat shock protein Gr 61.0 16 0.00035 37.5 5.5 33 606-638 56-88 (208)
118 PRK14140 heat shock protein Gr 60.9 17 0.00036 36.9 5.5 33 606-638 41-73 (191)
119 COG2433 Uncharacterized conser 60.4 36 0.00077 40.0 8.6 55 583-637 445-509 (652)
120 PRK14151 heat shock protein Gr 59.7 17 0.00037 36.3 5.3 35 604-638 22-56 (176)
121 PRK14163 heat shock protein Gr 59.4 17 0.00038 37.4 5.4 35 605-639 43-77 (214)
122 PRK14144 heat shock protein Gr 58.5 20 0.00043 36.6 5.6 35 605-639 48-82 (199)
123 PRK14158 heat shock protein Gr 58.3 22 0.00047 36.2 5.8 35 605-639 43-77 (194)
124 PF09726 Macoilin: Transmembra 57.8 36 0.00077 40.9 8.4 64 577-640 456-519 (697)
125 PF08581 Tup_N: Tup N-terminal 57.6 60 0.0013 28.5 7.6 56 582-637 12-78 (79)
126 PF12329 TMF_DNA_bd: TATA elem 57.4 81 0.0017 27.1 8.3 55 582-636 13-67 (74)
127 PRK14160 heat shock protein Gr 56.6 29 0.00062 35.8 6.4 41 599-639 58-98 (211)
128 smart00338 BRLZ basic region l 55.6 87 0.0019 25.7 8.1 54 585-638 8-62 (65)
129 KOG3119 Basic region leucine z 55.3 43 0.00094 35.5 7.7 62 576-637 189-250 (269)
130 PRK10884 SH3 domain-containing 55.0 51 0.0011 33.8 7.9 42 599-640 129-170 (206)
131 KOG4005 Transcription factor X 54.7 33 0.00072 35.9 6.5 48 581-628 97-144 (292)
132 PRK14162 heat shock protein Gr 54.6 26 0.00055 35.7 5.6 34 605-638 42-75 (194)
133 PRK14161 heat shock protein Gr 53.9 23 0.00049 35.5 5.1 33 607-639 24-56 (178)
134 PF07989 Microtub_assoc: Micro 53.5 70 0.0015 27.7 7.4 48 583-630 9-71 (75)
135 PF11544 Spc42p: Spindle pole 52.3 1E+02 0.0022 27.1 8.0 46 585-630 2-47 (76)
136 PF04977 DivIC: Septum formati 51.5 25 0.00054 29.4 4.3 31 605-635 20-50 (80)
137 PF10186 Atg14: UV radiation r 49.8 78 0.0017 32.8 8.6 34 603-636 71-104 (302)
138 PRK14145 heat shock protein Gr 48.5 37 0.00081 34.6 5.7 36 603-638 46-81 (196)
139 KOG2264 Exostosin EXT1L [Signa 48.2 63 0.0014 37.8 7.9 48 587-634 92-139 (907)
140 smart00307 ILWEQ I/LWEQ domain 45.8 38 0.00082 34.7 5.3 33 598-630 162-194 (200)
141 PF00170 bZIP_1: bZIP transcri 44.4 1.8E+02 0.0038 23.8 8.5 38 596-633 27-64 (64)
142 PF02344 Myc-LZ: Myc leucine z 44.2 41 0.00089 24.7 3.7 23 593-615 6-28 (32)
143 PF07989 Microtub_assoc: Micro 43.9 52 0.0011 28.5 5.1 44 577-620 32-75 (75)
144 PF10211 Ax_dynein_light: Axon 43.9 1.2E+02 0.0026 30.5 8.5 12 465-476 36-47 (189)
145 PF07716 bZIP_2: Basic region 43.6 60 0.0013 25.8 5.1 42 589-630 11-53 (54)
146 PRK14149 heat shock protein Gr 43.5 39 0.00084 34.3 4.9 31 608-638 42-72 (191)
147 PRK14157 heat shock protein Gr 43.2 40 0.00087 35.1 5.1 33 607-639 82-114 (227)
148 PRK14146 heat shock protein Gr 43.0 47 0.001 34.3 5.5 36 604-639 56-91 (215)
149 PF10186 Atg14: UV radiation r 42.9 1.2E+02 0.0025 31.5 8.6 13 587-599 33-45 (302)
150 PF05529 Bap31: B-cell recepto 42.6 1.1E+02 0.0024 30.4 8.0 60 579-638 116-183 (192)
151 COG0576 GrpE Molecular chapero 42.4 46 0.001 33.7 5.3 33 607-639 41-73 (193)
152 PF01608 I_LWEQ: I/LWEQ domain 41.8 51 0.0011 32.3 5.3 35 596-630 112-146 (152)
153 KOG4196 bZIP transcription fac 41.4 68 0.0015 30.8 5.8 34 603-636 75-108 (135)
154 KOG1853 LIS1-interacting prote 40.9 1.1E+02 0.0024 32.5 7.8 53 583-635 93-159 (333)
155 PF04728 LPP: Lipoprotein leuc 40.5 74 0.0016 26.3 5.2 27 610-636 4-30 (56)
156 KOG1962 B-cell receptor-associ 39.6 1.1E+02 0.0023 31.9 7.4 42 597-638 164-208 (216)
157 PF07200 Mod_r: Modifier of ru 39.6 1.3E+02 0.0027 28.6 7.6 54 581-634 34-87 (150)
158 PF05667 DUF812: Protein of un 39.5 1.1E+02 0.0025 36.1 8.6 62 580-641 327-388 (594)
159 KOG4674 Uncharacterized conser 38.4 95 0.0021 41.1 8.2 56 581-636 1229-1284(1822)
160 PF10224 DUF2205: Predicted co 37.9 83 0.0018 27.8 5.4 36 598-633 19-54 (80)
161 PF05266 DUF724: Protein of un 37.4 1.6E+02 0.0036 29.8 8.3 53 583-635 100-157 (190)
162 PF12709 Kinetocho_Slk19: Cent 37.4 90 0.0019 28.0 5.6 32 608-639 48-79 (87)
163 PRK00888 ftsB cell division pr 36.9 68 0.0015 29.4 5.0 32 605-636 30-61 (105)
164 PRK10884 SH3 domain-containing 36.6 1.7E+02 0.0037 30.0 8.4 35 600-634 116-150 (206)
165 PF07851 TMPIT: TMPIT-like pro 36.5 1.2E+02 0.0026 33.3 7.7 57 581-637 4-60 (330)
166 PRK14159 heat shock protein Gr 36.0 59 0.0013 32.6 4.9 32 608-639 29-60 (176)
167 PF13815 Dzip-like_N: Iguana/D 35.9 1.1E+02 0.0024 28.3 6.3 43 585-633 62-104 (118)
168 PF03962 Mnd1: Mnd1 family; I 35.7 1.9E+02 0.0041 29.1 8.5 19 616-634 110-128 (188)
169 PF08647 BRE1: BRE1 E3 ubiquit 35.6 2.6E+02 0.0056 25.1 8.4 55 582-636 4-58 (96)
170 PF04012 PspA_IM30: PspA/IM30 34.9 1.3E+02 0.0028 30.4 7.3 44 593-636 103-146 (221)
171 PF08614 ATG16: Autophagy prot 34.7 33 0.00072 34.3 2.9 58 580-637 73-144 (194)
172 TIGR02449 conserved hypothetic 34.7 2.5E+02 0.0054 23.9 7.6 28 592-619 11-38 (65)
173 PF06156 DUF972: Protein of un 34.6 1.9E+02 0.0041 26.7 7.6 48 590-637 3-50 (107)
174 PF00261 Tropomyosin: Tropomyo 33.9 2E+02 0.0043 29.7 8.5 49 586-634 181-229 (237)
175 PF07106 TBPIP: Tat binding pr 33.6 1.2E+02 0.0026 29.5 6.5 51 580-630 78-137 (169)
176 PF07716 bZIP_2: Basic region 33.3 1.1E+02 0.0024 24.3 5.2 31 607-637 23-53 (54)
177 TIGR00634 recN DNA repair prot 33.1 1.1E+02 0.0024 35.5 7.2 30 609-638 346-375 (563)
178 PF12329 TMF_DNA_bd: TATA elem 33.0 1.5E+02 0.0033 25.4 6.3 40 585-624 30-69 (74)
179 KOG0980 Actin-binding protein 32.6 6.5E+02 0.014 31.4 13.2 48 589-636 350-399 (980)
180 TIGR00293 prefoldin, archaeal 32.3 80 0.0017 29.1 4.8 35 600-634 91-125 (126)
181 PF06785 UPF0242: Uncharacteri 32.3 1.5E+02 0.0032 32.8 7.4 52 583-634 136-187 (401)
182 PF03980 Nnf1: Nnf1 ; InterPr 32.0 82 0.0018 28.5 4.7 31 608-638 79-109 (109)
183 KOG3335 Predicted coiled-coil 31.4 1E+02 0.0023 31.0 5.6 45 584-632 92-136 (181)
184 PF12001 DUF3496: Domain of un 31.1 89 0.0019 29.2 4.8 19 605-623 3-21 (111)
185 PRK13729 conjugal transfer pil 31.1 1.5E+02 0.0032 34.2 7.5 31 607-637 95-125 (475)
186 PRK14164 heat shock protein Gr 31.0 76 0.0016 32.9 4.8 30 609-638 77-106 (218)
187 PF11471 Sugarporin_N: Maltopo 30.9 95 0.0021 25.8 4.5 28 607-634 30-57 (60)
188 PRK15422 septal ring assembly 30.8 1.9E+02 0.0042 25.5 6.4 43 593-635 23-65 (79)
189 PRK10869 recombination and rep 30.5 1.3E+02 0.0029 35.1 7.3 34 605-638 337-370 (553)
190 COG5509 Uncharacterized small 30.5 85 0.0018 26.4 4.0 27 611-637 27-53 (65)
191 PF07888 CALCOCO1: Calcium bin 30.5 2E+02 0.0044 33.8 8.5 46 581-626 150-195 (546)
192 PF05377 FlaC_arch: Flagella a 30.4 1.4E+02 0.003 24.7 5.2 31 605-635 3-33 (55)
193 PF01119 DNA_mis_repair: DNA m 30.4 1.3E+02 0.0029 27.4 5.9 77 396-475 23-118 (119)
194 PF03962 Mnd1: Mnd1 family; I 30.3 2.4E+02 0.0051 28.4 8.1 34 589-622 63-96 (188)
195 PF02996 Prefoldin: Prefoldin 30.2 1.2E+02 0.0026 27.4 5.5 35 601-635 83-117 (120)
196 TIGR00219 mreC rod shape-deter 30.2 85 0.0019 33.5 5.2 45 582-636 67-111 (283)
197 COG2433 Uncharacterized conser 30.0 1.5E+02 0.0032 35.2 7.3 49 585-633 419-467 (652)
198 cd00890 Prefoldin Prefoldin is 30.0 1.4E+02 0.003 27.1 6.0 38 598-635 90-127 (129)
199 KOG4196 bZIP transcription fac 29.9 1.6E+02 0.0035 28.4 6.3 37 597-633 76-112 (135)
200 PF08312 cwf21: cwf21 domain; 29.6 1.5E+02 0.0033 23.4 5.2 30 605-634 7-43 (46)
201 KOG1760 Molecular chaperone Pr 29.5 1.6E+02 0.0034 28.2 6.1 37 600-636 86-122 (131)
202 smart00338 BRLZ basic region l 29.2 1.9E+02 0.004 23.7 6.0 27 605-631 36-62 (65)
203 PF04420 CHD5: CHD5-like prote 29.0 1E+02 0.0023 30.1 5.2 18 621-638 71-88 (161)
204 COG1730 GIM5 Predicted prefold 28.8 2E+02 0.0043 28.1 7.0 40 593-632 99-138 (145)
205 COG3923 PriC Primosomal replic 28.6 1E+02 0.0022 30.8 4.9 57 576-638 28-89 (175)
206 COG5124 Protein predicted to b 28.5 1.9E+02 0.0042 29.3 6.9 31 592-622 79-109 (209)
207 PF12718 Tropomyosin_1: Tropom 28.5 3.5E+02 0.0075 26.1 8.6 38 589-626 22-59 (143)
208 COG3074 Uncharacterized protei 28.5 2.4E+02 0.0051 24.5 6.4 42 593-634 23-64 (79)
209 PRK03947 prefoldin subunit alp 28.3 1.7E+02 0.0038 27.4 6.5 35 601-635 100-134 (140)
210 KOG4673 Transcription factor T 28.3 2E+02 0.0043 34.7 8.0 54 582-635 705-758 (961)
211 PHA01750 hypothetical protein 28.3 1.6E+02 0.0035 25.2 5.3 30 607-636 40-69 (75)
212 PF15035 Rootletin: Ciliary ro 28.2 2E+02 0.0043 29.0 7.1 44 593-636 65-108 (182)
213 COG5019 CDC3 Septin family pro 28.2 1.5E+02 0.0033 33.1 6.8 47 592-638 325-371 (373)
214 PF07200 Mod_r: Modifier of ru 28.0 3.3E+02 0.0071 25.8 8.4 56 583-638 29-84 (150)
215 PF03938 OmpH: Outer membrane 27.8 1.2E+02 0.0027 28.7 5.4 41 594-634 28-68 (158)
216 cd07605 I-BAR_IMD Inverse (I)- 27.4 1.7E+02 0.0036 30.4 6.6 29 592-620 69-105 (223)
217 KOG1318 Helix loop helix trans 27.4 73 0.0016 36.0 4.2 53 585-637 277-332 (411)
218 PF05615 THOC7: Tho complex su 27.3 1.8E+02 0.0039 27.4 6.4 36 598-633 77-112 (139)
219 PRK10698 phage shock protein P 27.0 2.2E+02 0.0049 29.3 7.5 47 592-638 103-149 (222)
220 PRK03992 proteasome-activating 27.0 1.8E+02 0.0039 32.2 7.2 47 583-629 3-49 (389)
221 COG1730 GIM5 Predicted prefold 26.4 1.9E+02 0.004 28.3 6.3 44 597-640 96-139 (145)
222 PF04111 APG6: Autophagy prote 26.2 3.4E+02 0.0074 29.5 9.0 40 585-624 54-93 (314)
223 PF08181 DegQ: DegQ (SacQ) fam 26.0 1E+02 0.0023 23.9 3.5 25 602-626 4-28 (46)
224 KOG1962 B-cell receptor-associ 25.9 2.4E+02 0.0051 29.4 7.3 55 584-638 130-187 (216)
225 cd07624 BAR_SNX7_30 The Bin/Am 25.6 1.8E+02 0.0038 29.3 6.3 42 599-640 124-169 (200)
226 PF04508 Pox_A_type_inc: Viral 25.6 85 0.0019 21.5 2.7 18 605-622 4-21 (23)
227 PF12999 PRKCSH-like: Glucosid 25.6 3E+02 0.0066 27.7 7.8 26 613-638 150-175 (176)
228 PRK14011 prefoldin subunit alp 25.5 2.9E+02 0.0062 26.9 7.4 56 582-637 81-137 (144)
229 KOG4370 Ral-GTPase effector RL 25.2 2E+02 0.0043 32.8 7.0 53 585-637 409-462 (514)
230 PF02403 Seryl_tRNA_N: Seryl-t 25.1 1.5E+02 0.0032 26.6 5.1 33 597-629 69-101 (108)
231 PF11853 DUF3373: Protein of u 24.8 62 0.0013 37.3 3.2 29 604-632 26-54 (489)
232 cd07307 BAR The Bin/Amphiphysi 24.7 2.7E+02 0.0058 26.0 7.1 51 584-634 94-153 (194)
233 PF14817 HAUS5: HAUS augmin-li 24.4 1.2E+02 0.0026 36.2 5.5 33 603-635 80-112 (632)
234 PF06657 Cep57_MT_bd: Centroso 24.2 1.6E+02 0.0035 25.6 5.0 31 604-634 12-42 (79)
235 COG1842 PspA Phage shock prote 24.2 4.1E+02 0.0088 27.7 8.7 56 580-635 84-139 (225)
236 PHA00727 hypothetical protein 24.1 1E+02 0.0022 31.7 4.1 29 598-626 45-74 (278)
237 PF00038 Filament: Intermediat 24.1 3.9E+02 0.0084 28.2 8.9 55 582-636 76-130 (312)
238 PF08182 Pedibin: Pedibin/Hym- 23.8 1.2E+02 0.0025 22.8 3.3 25 584-608 4-31 (35)
239 PF11932 DUF3450: Protein of u 23.5 4.2E+02 0.009 27.5 8.8 47 590-636 37-83 (251)
240 TIGR02209 ftsL_broad cell divi 23.4 1.3E+02 0.0029 25.5 4.3 29 606-634 28-56 (85)
241 KOG4119 G protein gamma subuni 23.4 1.7E+02 0.0036 25.4 4.7 35 605-639 10-44 (71)
242 PRK13169 DNA replication intia 23.2 3.6E+02 0.0079 25.1 7.3 47 590-636 3-49 (110)
243 PF00038 Filament: Intermediat 23.1 3.6E+02 0.0078 28.5 8.4 52 582-633 231-286 (312)
244 PRK10780 periplasmic chaperone 22.8 2.1E+02 0.0045 27.8 6.1 31 595-625 36-66 (165)
245 cd07622 BAR_SNX4 The Bin/Amphi 22.8 2E+02 0.0044 29.2 6.1 45 598-642 122-170 (201)
246 PF05278 PEARLI-4: Arabidopsis 22.8 3.5E+02 0.0075 29.1 8.0 45 589-633 180-224 (269)
247 PRK13922 rod shape-determining 22.7 3E+02 0.0064 28.8 7.6 31 605-635 79-112 (276)
248 KOG4005 Transcription factor X 22.6 2E+02 0.0044 30.4 6.0 45 582-626 105-149 (292)
249 PRK14150 heat shock protein Gr 22.6 1.6E+02 0.0035 29.9 5.3 31 608-638 40-74 (193)
250 TIGR02977 phageshock_pspA phag 22.5 3.1E+02 0.0067 28.0 7.5 41 597-637 108-148 (219)
251 KOG3096 Spliceosome-associated 22.4 3.6E+02 0.0078 28.0 7.6 40 585-624 112-153 (225)
252 KOG2077 JNK/SAPK-associated pr 22.3 1.6E+02 0.0034 34.8 5.6 41 584-624 332-372 (832)
253 PF06698 DUF1192: Protein of u 22.2 1.8E+02 0.0039 24.3 4.6 19 605-623 24-42 (59)
254 PF05700 BCAS2: Breast carcino 22.1 2.7E+02 0.006 28.5 7.0 19 618-636 191-209 (221)
255 PF11559 ADIP: Afadin- and alp 22.0 5.3E+02 0.011 24.5 8.5 36 599-634 91-126 (151)
256 PF12709 Kinetocho_Slk19: Cent 22.0 2.1E+02 0.0045 25.8 5.2 37 596-632 50-86 (87)
257 PF12718 Tropomyosin_1: Tropom 21.9 4.7E+02 0.01 25.2 8.2 44 592-635 11-54 (143)
258 cd07686 F-BAR_Fer The F-BAR (F 21.7 4.4E+02 0.0095 27.7 8.4 52 586-637 92-148 (234)
259 cd03483 MutL_Trans_MLH1 MutL_T 21.6 2.1E+02 0.0046 26.6 5.6 80 395-475 31-126 (127)
260 KOG2751 Beclin-like protein [S 21.6 3.7E+02 0.008 30.7 8.2 51 581-631 183-233 (447)
261 PF08172 CASP_C: CASP C termin 21.4 1.9E+02 0.0041 30.6 5.7 36 595-630 86-121 (248)
262 PRK11239 hypothetical protein; 21.4 1.4E+02 0.0031 30.9 4.7 28 605-632 186-213 (215)
263 PRK00295 hypothetical protein; 21.3 2.1E+02 0.0046 24.2 5.0 36 601-636 18-53 (68)
264 PF15136 UPF0449: Uncharacteri 21.3 1.7E+02 0.0037 26.8 4.6 27 594-620 56-82 (97)
265 PF04999 FtsL: Cell division p 21.3 1.6E+02 0.0036 25.8 4.6 31 607-637 40-70 (97)
266 cd00632 Prefoldin_beta Prefold 21.3 2.9E+02 0.0063 24.8 6.2 34 600-633 68-101 (105)
267 KOG0161 Myosin class II heavy 20.9 2.6E+02 0.0056 37.7 7.8 21 116-136 154-174 (1930)
268 PF08826 DMPK_coil: DMPK coile 20.9 5.1E+02 0.011 21.8 7.3 28 612-639 28-55 (61)
269 TIGR03752 conj_TIGR03752 integ 20.8 3E+02 0.0065 31.8 7.5 55 581-635 80-142 (472)
270 PF08614 ATG16: Autophagy prot 20.8 1.8E+02 0.004 29.0 5.3 48 579-626 114-161 (194)
271 PF09304 Cortex-I_coil: Cortex 20.8 6E+02 0.013 23.8 8.0 48 583-630 39-86 (107)
272 PF06810 Phage_GP20: Phage min 20.8 4.8E+02 0.01 25.5 8.1 54 586-639 25-81 (155)
273 PF09726 Macoilin: Transmembra 20.6 2.1E+02 0.0045 34.6 6.5 38 599-636 542-579 (697)
274 cd00584 Prefoldin_alpha Prefol 20.6 2.4E+02 0.0052 26.0 5.7 35 600-634 92-126 (129)
275 COG4026 Uncharacterized protei 20.5 3.9E+02 0.0084 28.2 7.5 51 591-641 131-181 (290)
276 PF12325 TMF_TATA_bd: TATA ele 20.5 4.1E+02 0.0089 25.1 7.2 33 589-621 31-63 (120)
277 PRK09697 protein secretion pro 20.4 59 0.0013 30.5 1.5 21 6-26 84-104 (139)
278 PF10212 TTKRSYEDQ: Predicted 20.3 3.1E+02 0.0068 32.0 7.5 48 589-636 435-482 (518)
279 COG3167 PilO Tfp pilus assembl 20.2 2E+02 0.0044 29.4 5.4 40 595-634 49-98 (211)
280 COG1382 GimC Prefoldin, chaper 20.2 2.9E+02 0.0063 26.2 6.1 39 598-636 73-111 (119)
281 PHA02562 46 endonuclease subun 20.2 3.2E+02 0.007 31.2 7.8 53 583-635 353-405 (562)
282 PRK04406 hypothetical protein; 20.1 2.2E+02 0.0048 24.6 4.9 35 601-635 24-58 (75)
283 PF07558 Shugoshin_N: Shugoshi 20.0 99 0.0021 24.3 2.5 35 584-618 10-44 (46)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.5e-54 Score=490.76 Aligned_cols=407 Identities=49% Similarity=0.715 Sum_probs=359.6
Q ss_pred CchhhhhhhcccccccCccccCCCcCcccccccccccccccccccccHHHHHHHHhccchhhhhCCCceEEEEEEEccCC
Q 006503 62 APESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKD 141 (643)
Q Consensus 62 ~~~~~~fw~ag~~~~~~~~~~~~~~~~l~~~~~~~~fL~sn~Tsh~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~ 141 (643)
+..||||||||+|..+.........++-.|+.+||+|||+|+|+|+|.++|++||+|||+|.+.++|+.+.|+......+
T Consensus 100 ~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d 179 (775)
T KOG1845|consen 100 AIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAELLDNALDEITNGATFVRVDYINPVMD 179 (775)
T ss_pred hhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhhccccccccccccceEEeeeeccccc
Confidence 34599999999999955556666677789999999999999999999999999999999999999999988887764444
Q ss_pred C-CCeEEEE-----ECCCCCCHHHHHHhhhcccccccC-CCCcccccccccccccccCCEEEEEee--eCCCCCcceeee
Q 006503 142 N-SPALVFI-----DDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFKTSTMRLGADVIVFSR--ATHESKSTQSIG 212 (643)
Q Consensus 142 ~-~~~I~I~-----DNG~GMs~~~l~~~~~~G~S~K~~-~~~IG~fGiGlKsAs~~lg~~v~V~Sr--~~~~~~~t~svg 212 (643)
. ...++|. |||+||.++.+..+|.+|++.|.. ...+|+||+|||++.|++|.++.|++| ...+.+.++++|
T Consensus 180 ~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsig 259 (775)
T KOG1845|consen 180 IFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIG 259 (775)
T ss_pred ccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEE
Confidence 4 4555665 779999999999999999999874 789999999999999999999999999 444556799999
Q ss_pred eeeeeehhccCCCCeEeee----eeccCCCCccccccccCccccchhhhh-----hcccCCCCChHHHHHh---------
Q 006503 213 LLSYTYLRKTGQDDVIVPM----IDFDISGHWAEPIIYSSQDDWSFNLKT-----ILEWSPFASKSELLQQ--------- 274 (643)
Q Consensus 213 lLS~tfl~~~~~~di~VPi----~d~d~~~~~~~~iv~~~~edw~~~l~~-----Il~ySPf~se~eL~~q--------- 274 (643)
+|||+||+.++.+|++||+ .+++...+.+.+|+..+..+|..++.+ +++|+||.++.+++.|
T Consensus 260 lls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~ 339 (775)
T KOG1845|consen 260 LLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDF 339 (775)
T ss_pred EEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhcccc
Confidence 9999999999999999999 888887778888988888999999888 9999999999999988
Q ss_pred ------hhccCCCeeEEEEecc--ccccCCcccccCCCChhhhhhcccccccccccchhhhhhhhccchhhhhhhhhhhh
Q 006503 275 ------FEDIGPHGTKVIIYNL--WMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYA 346 (643)
Q Consensus 275 ------f~~i~~~GT~IiI~nL--w~~~dg~~Eldf~~d~~DI~i~~~~~~~~~~~~~~~~~~l~~hl~~~~~~SLRaYl 346 (643)
|+.+..+||.||+||+ |....|..|+||+.++++|.. .+.++++.|.
T Consensus 340 ~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~-------------------------~~~~~~~s~~ 394 (775)
T KOG1845|consen 340 PEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW-------------------------TYCHSHLSEA 394 (775)
T ss_pred chhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc-------------------------cchhhhhhcc
Confidence 8888899999999999 999999999999998877541 3456788899
Q ss_pred hhhccCCCCceEEEEcCeecccccccccccCCccccCCCCCcCCC---ccceEEEEEeeeccCC-CccCCceEEEEeCce
Q 006503 347 SMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPL---KDATAETTIGFIKEAP-ALSVSGFNVYHKNRL 422 (643)
Q Consensus 347 SiLYL~~~~~~kI~LnG~~V~~~~i~~~L~~~e~~~YkPq~~~~v---~~~~v~itiGf~kea~-~~~~~G~~vY~~nRL 422 (643)
+|||+..+.+|++++.|+.+.++.+....+..+...|.|+....- .........||.+.++ +.+..|++|||.+||
T Consensus 395 sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~l 474 (775)
T KOG1845|consen 395 SILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRL 474 (775)
T ss_pred cccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcc
Confidence 999999889999999999999999999888889999999876531 1233345578877765 467789999999999
Q ss_pred ec----ccccccCCCCccCceEEEEeecCccCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 006503 423 IR----PFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPAS 493 (643)
Q Consensus 423 I~----~~ekVg~~~~~~grGVIGVle~nflePthnKQdFe~t~~y~~l~~~L~e~l~~YW~~~~~~~g~~~~~~ 493 (643)
|. ++|+.|+...+.++++++++..||.+++|++|+|+.+..-...+....++++.||...|+.++|.....
T Consensus 475 ie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~ 549 (775)
T KOG1845|consen 475 IEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQL 549 (775)
T ss_pred hhhcccceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhcccccccccccccCccchhh
Confidence 99 999999999999999999999999999999999999999999999999999999999999999976553
No 2
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.7e-26 Score=263.05 Aligned_cols=452 Identities=21% Similarity=0.215 Sum_probs=299.0
Q ss_pred eEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccccccCCEEEEEeeeCCCCCcceeeeeeeeeehhccCC
Q 006503 145 ALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQ 224 (643)
Q Consensus 145 ~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~~~~~t~svglLS~tfl~~~~~ 224 (643)
++++.|||.||+++++..+..|+. ....+|.||+|+|+.+|++|+++.++|+.. .+++++++|++|++....
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~----~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~----~~~s~~~~sqt~~e~~~~ 72 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV----GLYGIGDYGNGLKSGSMRIGKDFILFTKKE----STMSCLFLSQTFHESEAD 72 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc----cccccccccCcccccccccCcccceeeccc----cccceeeeeccccccccc
Confidence 478899999999999999999843 456899999999999999999999999984 378999999999999999
Q ss_pred CCeEeeeeeccCCCCccccccccCccccchhhhhhcccCCCCChHHHHHhhhcc-CCCe-eEEEEeccccccCCcccccC
Q 006503 225 DDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDI-GPHG-TKVIIYNLWMNDEGVYELSF 302 (643)
Q Consensus 225 ~di~VPi~d~d~~~~~~~~iv~~~~edw~~~l~~Il~ySPf~se~eL~~qf~~i-~~~G-T~IiI~nLw~~~dg~~Eldf 302 (643)
+.++||+..|+..+.. ++ .+.+.+++++|+.+|+|.+++.++.+++++ +.+| |.+||.|+.+...|.+++++
T Consensus 73 ~~vvvP~~t~~~~~~~---~~---~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~ 146 (775)
T KOG1845|consen 73 DAVVVPCPTFNPRTRE---IV---TEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKW 146 (775)
T ss_pred ccceeccccccccccc---cc---ccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCccccc
Confidence 9999999999976543 33 267888999999999999999999999987 4555 99999999999999999999
Q ss_pred CCChhhhhhcccccccccccchhhhhhhhccchhhhhhhhhhhhhhhccCCCCceEEEEcCeeccccccccccc------
Q 006503 303 DDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELK------ 376 (643)
Q Consensus 303 ~~d~~DI~i~~~~~~~~~~~~~~~~~~l~~hl~~~~~~SLRaYlSiLYL~~~~~~kI~LnG~~V~~~~i~~~L~------ 376 (643)
..|+.||++.++-.+... + ..|+.++|+. |.|.|++++..|++..++.+..
T Consensus 147 a~~a~aeLldnalDEi~~------------------~---~tf~~vd~I~--p~~d~~i~a~~v~~~~~s~~gg~~~~~~ 203 (775)
T KOG1845|consen 147 AKGAIAELLDNALDEITN------------------G---ATFVRVDYIN--PVMDIFIRALVVQLKRISDDGGGMKPEV 203 (775)
T ss_pred ccChhhhhcccccccccc------------------c---cceEEeeeec--ccccccceeEEeeccceeccccccCHHH
Confidence 999999999776433211 1 1236777776 7788888887777654332221
Q ss_pred ------CCccccCC---------CCCcCC---Cccce-------------EEEEEeee-----ccC--------------
Q 006503 377 ------FPKVISYR---------PQVSAP---LKDAT-------------AETTIGFI-----KEA-------------- 406 (643)
Q Consensus 377 ------~~e~~~Yk---------Pq~~~~---v~~~~-------------v~itiGf~-----kea-------------- 406 (643)
+.....+. -.+... +.... ..-.+|++ +..
T Consensus 204 i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d~iv~~~~i~~ 283 (775)
T KOG1845|consen 204 IRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRDFIVPMRLIKM 283 (775)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCceeEecchhhh
Confidence 11000000 000000 00000 00112211 000
Q ss_pred --------C------CccCCceEEEE------------------------------------eCceecccccccCCCCcc
Q 006503 407 --------P------ALSVSGFNVYH------------------------------------KNRLIRPFWKVTGDGSLK 436 (643)
Q Consensus 407 --------~------~~~~~G~~vY~------------------------------------~nRLI~~~ekVg~~~~~~ 436 (643)
| .....+.+++- .+.+..+.+++.....++
T Consensus 284 ~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~ 363 (775)
T KOG1845|consen 284 DYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRR 363 (775)
T ss_pred hhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhccCCCceeeeechhh
Confidence 0 01122333333 333333444433333345
Q ss_pred CceEEEEeecCccCCCCCcc-------cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---------CCCC----
Q 006503 437 GNGVVGVLEANFIEPTHDKQ-------DFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPA---------SSSY---- 496 (643)
Q Consensus 437 grGVIGVle~nflePthnKQ-------dFe~t~~y~~l~~~L~e~l~~YW~~~~~~~g~~~~~---------~~~~---- 496 (643)
..++-|+++++|-.+.|+.| .++.+-+|..++..+..++..+|..++-.++|+... ...-
T Consensus 364 ~~~~~g~~e~df~l~~~~i~~~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~ 443 (775)
T KOG1845|consen 364 WKGDEGILELDFDLDPHVIPWTYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQR 443 (775)
T ss_pred hcccccceeeccccCcccccccchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccch
Confidence 67889999999988889998 677888999999999999999987777666664222 1111
Q ss_pred --cccCCCCCCCCCCCCCCCCCCCchhhhcCCcccccc-----ccccCCcccccccchhc-cccCCCCcc-------cce
Q 006503 497 --NMESGGSVLSPVGHGPDMQKQPADQHKLGLASNFQE-----DMHLDVPSVALQGKVRH-NLENGKPAV-------QPI 561 (643)
Q Consensus 497 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~ 561 (643)
.....+....++.|+ .+++.+.+.++... .+ .+..++...+...++-+ .+.|...-+ .++
T Consensus 444 ~~~~~~~~~~~~~~~~~---~~~~~~nV~~~~~l--ie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~ 518 (775)
T KOG1845|consen 444 LIKLSPKPGFVKDAPRP---IDVQQFNVSHGPRL--IEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTI 518 (775)
T ss_pred hhcccCCCCcccccCCC---CCccCCccccCCcc--hhhcccceeeecCCCccccccccceecccccccCCCcccccccc
Confidence 011111122222222 33345566666554 33 44556666565555533 222221111 122
Q ss_pred eccccCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH--HhhhHHHHHHH-----------------------------
Q 006503 562 IGIAEGHDNDGTPEGHPVTISADQICEENIQLFIKCEE--HLQRETEINQL----------------------------- 610 (643)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~l~~~c~e--~~~~~~el~~~----------------------------- 610 (643)
.+.++ ....+...+.+.......|-+++.+++++|++ |.+||...++.
T Consensus 519 v~a~~-es~~~~~~~~~~~~~~~~i~~~~~q~~~~~~~~~~~~Ke~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (775)
T KOG1845|consen 519 VLASS-ESRDKQSLNTYEEKKCLRIDEAGRQLQKERESTTTVVKEEKPENNHLSSSKRTQRRKSTGRAISVAVEKFNLRS 597 (775)
T ss_pred ccccc-hhhhhhcccccccccccccCccchhhhhhhcccceeecccccccchhcchhccccccccccccccchhhhcccc
Confidence 22211 11223457778888889999999999999977 66666554443
Q ss_pred --------------HHHHHHHHHHHHHHHHH--HHHHHHHHHhhh
Q 006503 611 --------------IELLEKEVTQAKLKCAK--LSAYVEARKKQK 639 (643)
Q Consensus 611 --------------~~~l~~el~~~~~~~~~--l~~~l~~~~~~~ 639 (643)
.+.+.+|++..+++|++ ++.+.+.+++.+
T Consensus 598 ~~~~~~~~~~v~sq~~~~~~e~e~~k~~~~~~~~a~~~~~~~~~~ 642 (775)
T KOG1845|consen 598 GPNGRGQIDMVESQETPLLKEVERLKKKRRRAALALEVQSSKNEE 642 (775)
T ss_pred ccCCcCCccccccccchhhhHHHHhhhhhhhhhhhhhhccccchh
Confidence 35688999999999999 888888877543
No 3
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.69 E-value=2e-17 Score=154.75 Aligned_cols=91 Identities=35% Similarity=0.549 Sum_probs=79.1
Q ss_pred HHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc---CCCCcccccccccc
Q 006503 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK---ANKTIGQYGNGFKT 186 (643)
Q Consensus 110 f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~---~~~~IG~fGiGlKs 186 (643)
+.||+|||+||+|| .|+.|.|.+.... .+...|.|.|||.||+.+++.+++.+|.+.+. ....+|+||+|+|.
T Consensus 4 ~~al~ElI~Ns~DA---~a~~I~I~i~~~~-~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~ 79 (137)
T PF13589_consen 4 EDALRELIDNSIDA---GATNIKISIDEDK-KGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKL 79 (137)
T ss_dssp THHHHHHHHHHHHH---HHHHEEEEEEEET-TTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGG
T ss_pred HHHHHHHHHHHHHc---cCCEEEEEEEcCC-CCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHH
Confidence 46999999999999 7899999998743 46789999999999999999999999999887 46789999999999
Q ss_pred cccccCCEEEEEeeeCCC
Q 006503 187 STMRLGADVIVFSRATHE 204 (643)
Q Consensus 187 As~~lg~~v~V~Sr~~~~ 204 (643)
|++++|+.+.|.|++.+.
T Consensus 80 A~~~~~~~~~v~S~~~~~ 97 (137)
T PF13589_consen 80 AIFSLGDRVEVISKTNGE 97 (137)
T ss_dssp GGGGTEEEEEEEEESTTS
T ss_pred HHHHhcCEEEEEEEECCC
Confidence 999999999999999754
No 4
>PRK05218 heat shock protein 90; Provisional
Probab=99.68 E-value=1e-15 Score=174.96 Aligned_cols=105 Identities=27% Similarity=0.347 Sum_probs=78.1
Q ss_pred CcccccccccccccccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCC
Q 006503 87 GSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGG 153 (643)
Q Consensus 87 ~~l~~~~~~~~fL~sn~Tsh~~~f~AIaELIDNAiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~ 153 (643)
++++-+.-+ ||++.. .+|+|||.||.||+.. ++....|.|..+. +...|.|.|||.
T Consensus 14 ~ll~ll~~~---LYs~~~------v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~i~I~DnG~ 82 (613)
T PRK05218 14 QLLHLMIHS---LYSNKE------IFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDK--EARTLTISDNGI 82 (613)
T ss_pred HHHHHHhhh---hcCCch------HHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcC--CCCeEEEEECCC
Confidence 455555544 777765 5899999999999741 2334555555432 334699999999
Q ss_pred CCCHHHHHHhh-hccccccc------------CCCCcccccccccccccccCCEEEEEeeeCC
Q 006503 154 GMDPESLRKCM-SLGYSTKK------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 154 GMs~~~l~~~~-~~G~S~K~------------~~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
||+.+++...+ ++|+|.+. +...+|+||+||.+ +|.++.+++|.||+.+
T Consensus 83 GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S-~f~va~~v~V~Sr~~~ 144 (613)
T PRK05218 83 GMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYS-AFMVADKVTVITRSAG 144 (613)
T ss_pred CCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchh-hhhccCEEEEEEcCCC
Confidence 99999999765 58887421 34679999999975 6779999999999864
No 5
>PRK14083 HSP90 family protein; Provisional
Probab=99.56 E-value=6.8e-14 Score=159.35 Aligned_cols=105 Identities=26% Similarity=0.462 Sum_probs=79.4
Q ss_pred cCcccccccccccccccccccccHHHHHHHHhccchhhhhCC-------CceEEEEEEEccCCCCCeEEEEECCCCCCHH
Q 006503 86 QGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNG-------ATFVKVDRVNIMKDNSPALVFIDDGGGMDPE 158 (643)
Q Consensus 86 ~~~l~~~~~~~~fL~sn~Tsh~~~f~AIaELIDNAiDA~~~g-------At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~ 158 (643)
.++++.++-+ |+++.. .+|+|||.||+||+... ...|.|.+. + .+...|+|.|||.||+.+
T Consensus 10 ~~ll~ll~~~---LYs~~~------iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d--~~~~~l~I~DnGiGmt~e 77 (601)
T PRK14083 10 RGVIDLLSRH---LYSSPR------VYVRELLQNAVDAITARRALDPTAPGRIRIELT-D--AGGGTLIVEDNGIGLTEE 77 (601)
T ss_pred HHHHHHHHHh---hcCCcH------HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-c--CCCcEEEEEeCCCCCCHH
Confidence 3566666644 677653 68999999999996421 125556552 2 346789999999999999
Q ss_pred HHHHh-hhcccccccC-------CCCcccccccccccccccCCEEEEEeeeCC
Q 006503 159 SLRKC-MSLGYSTKKA-------NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 159 ~l~~~-~~~G~S~K~~-------~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
++.+. +.+|.|.+.. ...||+||+||++ +|.+|..+.|.||..+
T Consensus 78 el~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S-~F~vad~v~V~Tr~~~ 129 (601)
T PRK14083 78 EVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLS-CFLVADEIVVVSRSAK 129 (601)
T ss_pred HHHHHHhhhccchhhhhhhcccccccccccccceEE-EEEecCEEEEEeccCC
Confidence 99985 5699888753 2468999999975 5669999999999853
No 6
>PTZ00130 heat shock protein 90; Provisional
Probab=99.48 E-value=8.1e-13 Score=153.24 Aligned_cols=105 Identities=22% Similarity=0.323 Sum_probs=78.0
Q ss_pred CcccccccccccccccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCC
Q 006503 87 GSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGG 153 (643)
Q Consensus 87 ~~l~~~~~~~~fL~sn~Tsh~~~f~AIaELIDNAiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~ 153 (643)
++|+-+.-+ |||+.. .+|+|||.||.||+.. +...+.|.|..+ .....|+|.|||.
T Consensus 76 ~Lldiii~s---LYS~ke------IFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D--~~~~tLtI~DnGI 144 (814)
T PTZ00130 76 RLMDIIVNS---LYTQKE------VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISAN--KEKNILSITDTGI 144 (814)
T ss_pred HHHHHHhhc---cCCCCC------ceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEEC--CCCCEEEEEECCC
Confidence 445555444 777765 4799999999999841 123566777653 2456899999999
Q ss_pred CCCHHHHHHhh-hccccccc-----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 006503 154 GMDPESLRKCM-SLGYSTKK-----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 154 GMs~~~l~~~~-~~G~S~K~-----------~~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
||+.+++.+.+ ++|+|... +..-||+||+||.+++ -++.+|.|.||+.+
T Consensus 145 GMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaF-mVAdkV~V~Trs~~ 205 (814)
T PTZ00130 145 GMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAF-LVADKVIVYTKNNN 205 (814)
T ss_pred CCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhhee-eecCEEEEEEcCCC
Confidence 99999997654 58887522 2457999999998654 59999999999754
No 7
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=7.1e-13 Score=149.37 Aligned_cols=98 Identities=28% Similarity=0.424 Sum_probs=76.5
Q ss_pred ccccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh
Q 006503 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS 165 (643)
Q Consensus 99 L~sn~Tsh~~~f~AIaELIDNAiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~ 165 (643)
||||.. ..|+|||.||.||+.. +...+.|.+..+ ....+|+|.|||.||+.+++...+.
T Consensus 24 lYSnKe------IFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~D--k~~kTLtI~DNGIGMT~~Ev~~~Lg 95 (623)
T COG0326 24 LYSNKE------IFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFD--KDNKTLTISDNGIGMTKDEVIENLG 95 (623)
T ss_pred ccCCcH------HHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEc--ccCCEEEEEeCCCCCCHHHHHHHHH
Confidence 777766 4699999999999831 122456666553 3567999999999999999988765
Q ss_pred -ccccccc-----------CCCCcccccccccccccccCCEEEEEeeeCCCC
Q 006503 166 -LGYSTKK-----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATHES 205 (643)
Q Consensus 166 -~G~S~K~-----------~~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~~~ 205 (643)
++.|..+ +..-||+||+||.+|+| ++.+|+|.||..+++
T Consensus 96 TIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~ 146 (623)
T COG0326 96 TIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGED 146 (623)
T ss_pred HhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCC
Confidence 8877644 23459999999998766 999999999997644
No 8
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.44 E-value=3.2e-12 Score=146.72 Aligned_cols=89 Identities=22% Similarity=0.330 Sum_probs=73.2
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC-------CCCccc
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ 179 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~-------~~~IG~ 179 (643)
..|.++|.||||||+|| ||+.|.|.+.. ++...|.|.|||+||+.+++..++....++|.. ..++|.
T Consensus 21 ~~~~svvkElveNsiDA---gat~I~v~i~~---~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~Gf 94 (617)
T PRK00095 21 ERPASVVKELVENALDA---GATRIDIEIEE---GGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGF 94 (617)
T ss_pred cCHHHHHHHHHHHHHhC---CCCEEEEEEEe---CCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCc
Confidence 56778999999999999 99999999964 356789999999999999999998866666652 267899
Q ss_pred ccccccccccccCCEEEEEeeeCC
Q 006503 180 YGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 180 fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
.|.|+.+.+ ...+++|.||+.+
T Consensus 95 rGeAL~sI~--~vs~l~i~s~~~~ 116 (617)
T PRK00095 95 RGEALPSIA--SVSRLTLTSRTAD 116 (617)
T ss_pred chhHHHhhh--hceEEEEEEecCC
Confidence 999985433 3458999999864
No 9
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.43 E-value=2e-12 Score=148.53 Aligned_cols=89 Identities=21% Similarity=0.348 Sum_probs=73.1
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-------CCCCccc
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-------ANKTIGQ 179 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~-------~~~~IG~ 179 (643)
+.|.+++.|||+||+|| ||+.|.|.+.. +|...|.|.|||+||+++++.-++....++|- .-.++|.
T Consensus 22 erPaSVVKELVENSlDA---GAt~I~I~ve~---gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~TlGF 95 (638)
T COG0323 22 ERPASVVKELVENSLDA---GATRIDIEVEG---GGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIRTLGF 95 (638)
T ss_pred ecHHHHHHHHHhccccc---CCCEEEEEEcc---CCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhhccCc
Confidence 56778999999999999 99999998864 67778999999999999999988764444443 3467888
Q ss_pred ccccccccccccCCEEEEEeeeCC
Q 006503 180 YGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 180 fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
-|-.| ++.+-..+++|.||+.+
T Consensus 96 RGEAL--~SIasVsrlti~Srt~~ 117 (638)
T COG0323 96 RGEAL--ASIASVSRLTITSRTAE 117 (638)
T ss_pred cHHHH--HHHHhhheeEEEeecCC
Confidence 88766 56777899999999653
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.39 E-value=6.2e-12 Score=132.91 Aligned_cols=87 Identities=21% Similarity=0.331 Sum_probs=69.9
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-------CCCCccc
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-------ANKTIGQ 179 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~-------~~~~IG~ 179 (643)
..+..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++..++++|. ....+|+
T Consensus 21 ~~~~~~l~eLi~Na~dA---~a~~I~i~~~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~ 94 (312)
T TIGR00585 21 ERPASVVKELVENSLDA---GATRIDVEIEE---GGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGF 94 (312)
T ss_pred hhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCc
Confidence 45668999999999999 89999888864 23446999999999999999999886666665 2356899
Q ss_pred ccccccccccccCCEEEEEeee
Q 006503 180 YGNGFKTSTMRLGADVIVFSRA 201 (643)
Q Consensus 180 fGiGlKsAs~~lg~~v~V~Sr~ 201 (643)
.|.|+. ++....+++|.|+.
T Consensus 95 rG~al~--si~~~s~~~i~S~~ 114 (312)
T TIGR00585 95 RGEALA--SISSVSRLTITTKT 114 (312)
T ss_pred cchHHH--HHHhhCcEEEEEee
Confidence 999884 44445589999998
No 11
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.36 E-value=1.9e-11 Score=141.33 Aligned_cols=95 Identities=26% Similarity=0.338 Sum_probs=72.3
Q ss_pred ccccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 006503 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (643)
Q Consensus 99 L~sn~Tsh~~~f~AIaELIDNAiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~- 164 (643)
|||+.- ..|+|||.||.||+.. ....+.|.+..+ .....|+|.|||.||+.+++.+.+
T Consensus 22 lYs~~~------iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d--~~~~~L~I~DnGiGMt~edl~~~Lg 93 (701)
T PTZ00272 22 FYSNKE------IFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPD--KENKTLTVEDNGIGMTKADLVNNLG 93 (701)
T ss_pred ccCCcc------HhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEc--CCCCEEEEEECCCCCCHHHHHHHhh
Confidence 777754 4699999999999731 123466777653 345689999999999999998765
Q ss_pred hccccccc----------CCCCcccccccccccccccCCEEEEEeeeC
Q 006503 165 SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (643)
Q Consensus 165 ~~G~S~K~----------~~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~ 202 (643)
.+|+|... +...||+||+||.++ |-++..+.|.||+.
T Consensus 94 tIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~-Fmvad~V~V~Srs~ 140 (701)
T PTZ00272 94 TIARSGTKAFMEALEAGGDMSMIGQFGVGFYSA-YLVADRVTVTSKNN 140 (701)
T ss_pred hhhhcchHHHHHHhhccCCccccCCCCcceEEE-EEeccEEEEEEecC
Confidence 47776432 245899999999765 55999999999975
No 12
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.87 E-value=1.1e-08 Score=111.76 Aligned_cols=96 Identities=25% Similarity=0.353 Sum_probs=76.4
Q ss_pred cHHHHHHHHhccchhhhh-CC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc--CCCCcccccc
Q 006503 108 WAFGAIAELLDNAVDEVQ-NG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK--ANKTIGQYGN 182 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~-~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~-~G~S~K~--~~~~IG~fGi 182 (643)
....+|.|||+||+||+. +| -..|.|.|.... .+...+.|+|||.||+++.+.++|. +=+++|. .....|++|+
T Consensus 36 sL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~-~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGi 114 (538)
T COG1389 36 SLTTTVHELVTNSLDACEEAGILPDIKVEIERIG-KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGI 114 (538)
T ss_pred HHHHHHHHHHhcchhhHHhcCCCCceEEEEEecC-CceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccc
Confidence 344689999999999985 33 456788777632 4577899999999999999999986 5455554 6788999999
Q ss_pred ccccc----ccccCCEEEEEeeeCCC
Q 006503 183 GFKTS----TMRLGADVIVFSRATHE 204 (643)
Q Consensus 183 GlKsA----s~~lg~~v~V~Sr~~~~ 204 (643)
|.+.| -|..|+.+.|.|++.++
T Consensus 115 Gis~avLysQmTtGkPv~V~s~T~~s 140 (538)
T COG1389 115 GISAAVLYSQMTTGKPVRVISSTGDS 140 (538)
T ss_pred cHHHHHHHHHhcCCCceEEEecCCCC
Confidence 98754 56789999999999653
No 13
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.64 E-value=2.8e-08 Score=110.70 Aligned_cols=90 Identities=22% Similarity=0.274 Sum_probs=71.4
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-hccccccc---C---CCCccc
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK---A---NKTIGQ 179 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~-~~G~S~K~---~---~~~IG~ 179 (643)
..|..||.|||+||+|| ++|.|.|.+.. +|-..|.|.|||.||-.+++.-.. +|-+|.-. + -.++|.
T Consensus 26 ~RP~NAlKEliENSLDA---~ST~I~V~vk~---GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kFEDL~~lsTyGF 99 (694)
T KOG1979|consen 26 QRPVNALKELIENSLDA---NSTSIDVLVKD---GGLKLLQISDNGSGIRREDLPILCERFTTSKLTKFEDLFSLSTYGF 99 (694)
T ss_pred hchHHHHHHHHhccccC---CCceEEEEEec---CCeEEEEEecCCCccchhhhHHHHHHhhhhhcchhHHHHhhhhcCc
Confidence 45667999999999999 99998888764 567778899999999999998755 47666432 2 345555
Q ss_pred ccccccccccccCCEEEEEeeeCCC
Q 006503 180 YGNGFKTSTMRLGADVIVFSRATHE 204 (643)
Q Consensus 180 fGiGlKsAs~~lg~~v~V~Sr~~~~ 204 (643)
-|-. .|+++...+|+|.|++.++
T Consensus 100 RGEA--LASiShVA~VtV~TK~~~~ 122 (694)
T KOG1979|consen 100 RGEA--LASISHVAHVTVTTKTAEG 122 (694)
T ss_pred cHHH--HhhhhheeEEEEEEeecCc
Confidence 5544 5899999999999999764
No 14
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=98.60 E-value=6.5e-08 Score=108.01 Aligned_cols=94 Identities=26% Similarity=0.381 Sum_probs=77.7
Q ss_pred cccccHHHHHHHHhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCcccc
Q 006503 104 TSHKWAFGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQY 180 (643)
Q Consensus 104 Tsh~~~f~AIaELIDNAiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~-~~~~IG~f 180 (643)
+.|.++ ..+++|||||+||+... .+.|.+.+.. .++...|.|.|||+||+++....+|..|+|+|. ..+++|.|
T Consensus 424 ~~~~li-tIlGNLidNA~eA~~~~~~~k~I~l~i~~--~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~~~rGiGL~ 500 (537)
T COG3290 424 QPHDLV-TILGNLIDNALEALLAPEENKEIELSLSD--RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNTGGRGIGLY 500 (537)
T ss_pred ChHHHH-HHHHHHHHHHHHHhhccCCCcEEEEEEEe--cCCEEEEEEeCCCCCCChHHHHHHHhcCccccCCCCCchhHH
Confidence 445555 69999999999998632 3556666654 567888999999999999999999999999998 77788888
Q ss_pred cccccccccccCCEEEEEeeeC
Q 006503 181 GNGFKTSTMRLGADVIVFSRAT 202 (643)
Q Consensus 181 GiGlKsAs~~lg~~v~V~Sr~~ 202 (643)
- .|...-++|+.+.|.|...
T Consensus 501 L--vkq~V~~~~G~I~~~s~~~ 520 (537)
T COG3290 501 L--VKQLVERLGGSIEVESEKG 520 (537)
T ss_pred H--HHHHHHHcCceEEEeeCCC
Confidence 7 5778889999999999854
No 15
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=7.6e-08 Score=107.98 Aligned_cols=90 Identities=26% Similarity=0.430 Sum_probs=71.3
Q ss_pred HHHHHhccchhhhh--------C---CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc-------
Q 006503 112 AIAELLDNAVDEVQ--------N---GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK------- 172 (643)
Q Consensus 112 AIaELIDNAiDA~~--------~---gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~-~G~S~K~------- 172 (643)
-++|||-||-||.. . ..+...|.+..+ .....|+|.|.|.||+.++|.+.+. ...|...
T Consensus 61 FlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~n--k~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealk 138 (656)
T KOG0019|consen 61 FLRELISNASDALEKLRYLELKGDEKALPELEIRIITN--KDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALK 138 (656)
T ss_pred HHHhhhccccchHHHHHHHhhcCccccccceeEEeccC--CCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHH
Confidence 49999999999973 1 134567777654 4577999999999999999998775 6555432
Q ss_pred ----CCCCcccccccccccccccCCEEEEEeeeCCC
Q 006503 173 ----ANKTIGQYGNGFKTSTMRLGADVIVFSRATHE 204 (643)
Q Consensus 173 ----~~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~~ 204 (643)
+...||+||+||.+|.+ .+.+|.|+||..++
T Consensus 139 ea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~ 173 (656)
T KOG0019|consen 139 EAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPAD 173 (656)
T ss_pred hcccchhhhhhcccchhhhhh-hhheeEEeeccCCC
Confidence 34689999999998765 89999999998754
No 16
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.56 E-value=7.5e-08 Score=111.21 Aligned_cols=122 Identities=22% Similarity=0.233 Sum_probs=89.3
Q ss_pred cccccccCccccCCCcCcccccccccccccccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCCCeEEEE
Q 006503 71 AGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFI 149 (643)
Q Consensus 71 ag~~~~~~~~~~~~~~~~l~~~~~~~~fL~sn~Tsh~~~f~AIaELIDNAiDA~~~g-At~V~I~i~~~~~~~~~~I~I~ 149 (643)
+.+|+. . ...-...++|++.-|. .|--+|-..-+..++.||||||+|+..+| |+.|.|.+..+ ..|+|.
T Consensus 5 ~~~y~~-~---~i~~L~~lE~VrkRP~-mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~d-----g~I~V~ 74 (631)
T PRK05559 5 TNNYNA-D---SIEVLEGLEPVRKRPG-MYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHAD-----GSVSVR 74 (631)
T ss_pred cCCCCH-H---HCeeccchHHHhcCCC-ceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCC-----CcEEEE
Confidence 345666 2 2223567888888875 22234445777889999999999987664 89999988741 389999
Q ss_pred ECCCCCCHHHHHH--------hhh-cccccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 006503 150 DDGGGMDPESLRK--------CMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 150 DNG~GMs~~~l~~--------~~~-~G~S~K~~----~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
|||.||+.+.... +|. +..++|.+ ....|+.|+|++. .-.++..++|.|++.+
T Consensus 75 DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~-vNalS~~l~V~s~r~g 140 (631)
T PRK05559 75 DNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSV-VNALSSRLEVEVKRDG 140 (631)
T ss_pred EcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhh-hhhheeeEEEEEEeCC
Confidence 9999999998887 665 34444442 2578999999964 5568889999999753
No 17
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.48 E-value=1.7e-07 Score=106.56 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=64.8
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHh-hhccccccc------CCCCccc
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKC-MSLGYSTKK------ANKTIGQ 179 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~-~~~G~S~K~------~~~~IG~ 179 (643)
..+..|+.||||||+|| ||+.|.|.+.. .|...|+|.|||+|+++.+..-+ +..-+|.-. ...++|.
T Consensus 19 ~sl~sAVKELvENSiDA---GAT~I~I~~kd---yG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~f~Dl~~l~T~GF 92 (672)
T KOG1978|consen 19 TSLVSAVKELVENSIDA---GATAIDIKVKD---YGSDSIEVSDNGSGISATDFEGLALKHTTSKIVSFADLAVLFTLGF 92 (672)
T ss_pred ccHHHHHHHHHhcCccc---CCceeeEecCC---CCcceEEEecCCCCCCccchhhhhhhhhhhcccchhhhhhhhhhhh
Confidence 34457999999999999 99999998864 37889999999999999988763 333333222 3567888
Q ss_pred ccccccccccccCCEEEEEeeeC
Q 006503 180 YGNGFKTSTMRLGADVIVFSRAT 202 (643)
Q Consensus 180 fGiGlKsAs~~lg~~v~V~Sr~~ 202 (643)
.|-.+ + ++---++++|.|++.
T Consensus 93 RGEAL-S-sLCa~~dv~I~Trt~ 113 (672)
T KOG1978|consen 93 RGEAL-S-SLCALGDVMISTRSH 113 (672)
T ss_pred HHHHH-H-hhhhccceEEEEeec
Confidence 88766 2 332336777888875
No 18
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.48 E-value=2.2e-07 Score=82.38 Aligned_cols=92 Identities=24% Similarity=0.353 Sum_probs=70.5
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccc--
Q 006503 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT-- 186 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKs-- 186 (643)
+..+|.||++||+++...+ ..|.|.+... ++...|.|.|||.||+++++.+++..+++.+......+.+|+||..
T Consensus 6 l~~il~~ll~Na~~~~~~~-~~I~i~~~~~--~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~~~~~g~GlGL~~~~ 82 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEG-GKIDITIEED--DDHLSIEISDNGVGIPPEELEKLFEPFFTSDKSETSISGHGLGLYIVK 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SEEEEEEEEE--TTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSSSGGSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CEEEEEEEEe--cCeEEEEEEeccccccccccccchhhcccccccccccCCCChHHHHHH
Confidence 4568999999999995432 5788877763 3678899999999999999999998776655444555668888753
Q ss_pred -cccccCCEEEEEeeeCC
Q 006503 187 -STMRLGADVIVFSRATH 203 (643)
Q Consensus 187 -As~~lg~~v~V~Sr~~~ 203 (643)
.+-.++.++.+.+...+
T Consensus 83 ~~~~~~~g~l~~~~~~~~ 100 (111)
T PF02518_consen 83 QIAERHGGELTIESSEGG 100 (111)
T ss_dssp HHHHHTTEEEEEEEETTT
T ss_pred HHHHHCCCEEEEEEcCCC
Confidence 35568888988888643
No 19
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.39 E-value=8e-07 Score=102.18 Aligned_cols=86 Identities=26% Similarity=0.264 Sum_probs=62.8
Q ss_pred HHHHHhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--------Hhhh-cccccccC----CCCc
Q 006503 112 AIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA----NKTI 177 (643)
Q Consensus 112 AIaELIDNAiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~--------~~~~-~G~S~K~~----~~~I 177 (643)
++.||||||+||..++ |+.|.|.+.. ++ .|+|.|||.||+.+... .+|. +-.+.|.+ ....
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~ 79 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDK---DN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSG 79 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeC---CC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccC
Confidence 5789999999996544 9999998864 22 89999999999964432 2233 22223332 3478
Q ss_pred ccccccccccccccCCEEEEEeeeCC
Q 006503 178 GQYGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 178 G~fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
|+.|+|++ +...++..++|.|+..+
T Consensus 80 G~~G~Gls-~vnalS~~l~v~~~~~g 104 (594)
T smart00433 80 GLHGVGAS-VVNALSTEFEVEVARDG 104 (594)
T ss_pred CcccchHH-HHHHhcCceEEEEEeCC
Confidence 99999996 45568899999999863
No 20
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.39 E-value=5.6e-07 Score=104.41 Aligned_cols=95 Identities=24% Similarity=0.347 Sum_probs=70.0
Q ss_pred ccHHHHHHHHhccchhhhhCCC--ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc--CCCCccccc
Q 006503 107 KWAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK--ANKTIGQYG 181 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gA--t~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~-~G~S~K~--~~~~IG~fG 181 (643)
.+...+|.|||+||+||...+. ..|.|.+.. .+....|.|.|||+||+++++.++|. |.+++|. .....|..|
T Consensus 45 r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~--~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG 122 (795)
T PRK14868 45 RGLVTAVKEAVDNALDATEEAGILPDIYVEIEE--VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQG 122 (795)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE--CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCc
Confidence 3456799999999999942211 157777754 23345799999999999999999996 6666553 235678899
Q ss_pred ccccccc----cccCCEEEEEeeeCC
Q 006503 182 NGFKTST----MRLGADVIVFSRATH 203 (643)
Q Consensus 182 iGlKsAs----~~lg~~v~V~Sr~~~ 203 (643)
+|+.++. +..|+.+.|.|+..+
T Consensus 123 ~GLglai~~sqlt~GgpI~I~S~~~~ 148 (795)
T PRK14868 123 IGISAAVLYSQLTSGKPAKITSRTQG 148 (795)
T ss_pred eehHHHHHHHHHcCCCcEEEEeCCCC
Confidence 9987643 335888999999754
No 21
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5e-07 Score=99.20 Aligned_cols=91 Identities=27% Similarity=0.397 Sum_probs=67.9
Q ss_pred HHHHHhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc-----
Q 006503 112 AIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK----- 172 (643)
Q Consensus 112 AIaELIDNAiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~-~G~S~K~----- 172 (643)
-++|||.||-||... ....+.|.|..+ .....+.|.|.|.||+.++|.+.+. ++.|.-.
T Consensus 99 FLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~D--ke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~K 176 (785)
T KOG0020|consen 99 FLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKAD--KEKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEK 176 (785)
T ss_pred HHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeec--hhhCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHH
Confidence 489999999999731 223456666653 3567899999999999999987664 4444321
Q ss_pred ----------CCCCcccccccccccccccCCEEEEEeeeCCCC
Q 006503 173 ----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATHES 205 (643)
Q Consensus 173 ----------~~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~~~ 205 (643)
....||+||+||.+| |-.+..+.|+|+.+++.
T Consensus 177 m~~~~~~~~~~~dlIGQFGVGFYsA-fLVAD~vvVtsKhNdD~ 218 (785)
T KOG0020|consen 177 MQDSGDSEGLMNDLIGQFGVGFYSA-FLVADRVVVTSKHNDDS 218 (785)
T ss_pred hhccccchhhHHHHHHhcchhhhhh-hhhcceEEEEeccCCcc
Confidence 125699999999866 45899999999998764
No 22
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.34 E-value=5.9e-07 Score=103.97 Aligned_cols=121 Identities=22% Similarity=0.289 Sum_probs=81.9
Q ss_pred cccccccCccccCCCcCcccccccccc-cccccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCCCeEEE
Q 006503 71 AGTYAANITIKSTPVQGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVF 148 (643)
Q Consensus 71 ag~~~~~~~~~~~~~~~~l~~~~~~~~-fL~sn~Tsh~~~f~AIaELIDNAiDA~~~g-At~V~I~i~~~~~~~~~~I~I 148 (643)
+.+|+. . ...-...++|++.-|. |+-|. -..-....+.||||||+|...+| |+.|.|.+.. + ..|+|
T Consensus 5 ~~~Y~~-~---~i~~L~~lE~Vr~RPgMYiGs~--~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---~--g~I~V 73 (638)
T PRK05644 5 AQEYDA-S---QIQVLEGLEAVRKRPGMYIGST--GERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---D--GSITV 73 (638)
T ss_pred cCCCCH-H---HCeEecchHHHhcCCCceECCC--ChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC---C--CcEEE
Confidence 355776 2 1223566888877774 44433 23444567889999999954447 9999998864 2 28999
Q ss_pred EECCCCCCHHHH--------HHhhh-cccccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 006503 149 IDDGGGMDPESL--------RKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 149 ~DNG~GMs~~~l--------~~~~~-~G~S~K~~----~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
.|||+||+.+.- +.+|. +..+.|.+ ..+.|+.|+|+++ .-.++..++|.|++.+
T Consensus 74 ~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~-vnalS~~~~v~t~r~g 140 (638)
T PRK05644 74 TDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSV-VNALSTWLEVEVKRDG 140 (638)
T ss_pred EEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhh-hhheeceEEEEEEeCC
Confidence 999999998622 22343 32333432 2478999999964 5568899999999753
No 23
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.33 E-value=1e-06 Score=99.71 Aligned_cols=96 Identities=25% Similarity=0.410 Sum_probs=68.6
Q ss_pred HHHHHHHHhccchhhhhCC--CceEEEEEEEcc-CCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc-C-CCCcccccc
Q 006503 109 AFGAIAELLDNAVDEVQNG--ATFVKVDRVNIM-KDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK-A-NKTIGQYGN 182 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~g--At~V~I~i~~~~-~~~~~~I~I~DNG~GMs~~~l~~~~~-~G~S~K~-~-~~~IG~fGi 182 (643)
...+|.|||+||+||...+ ...|.|.+.... .++...|.|.|||.||+++++.++|. |.+++|. . ....|.+|+
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GL 116 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGI 116 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCc
Confidence 3468999999999995321 125777775421 23456799999999999999999986 5455554 2 456799999
Q ss_pred cccccc----cccCCEEEEEeeeCCC
Q 006503 183 GFKTST----MRLGADVIVFSRATHE 204 (643)
Q Consensus 183 GlKsAs----~~lg~~v~V~Sr~~~~ 204 (643)
|+..+. +..|..+.|.|+..++
T Consensus 117 GLsiv~~isq~~~G~~I~V~S~~~~g 142 (535)
T PRK04184 117 GISAAVLYAQMTTGKPVRVISSTGGS 142 (535)
T ss_pred chHHHHHHHHHhcCCcEEEEEecCCC
Confidence 997542 2346679999997543
No 24
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.31 E-value=1.3e-06 Score=97.97 Aligned_cols=96 Identities=24% Similarity=0.291 Sum_probs=68.8
Q ss_pred ccHHHHHHHHhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc--CCCCccccc
Q 006503 107 KWAFGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK--ANKTIGQYG 181 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~-~G~S~K~--~~~~IG~fG 181 (643)
.....++.|||+||+||.... ...|.|.+... .++...|.|.|||.||+++++.++|. |.+++|. .....|.+|
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~G 105 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQG 105 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCcc
Confidence 345579999999999995321 12577777542 11234799999999999999999987 5666664 345678999
Q ss_pred ccccccc----cccCCEEEEEeeeCC
Q 006503 182 NGFKTST----MRLGADVIVFSRATH 203 (643)
Q Consensus 182 iGlKsAs----~~lg~~v~V~Sr~~~ 203 (643)
+|+..+. +..|..+.|.|+..+
T Consensus 106 lGLs~~~~isq~~~G~~i~V~S~~~g 131 (488)
T TIGR01052 106 IGISGAVLYSQMTTGKPVKVISSTGG 131 (488)
T ss_pred EehhHHHHHHHHcCCceEEEEEecCC
Confidence 9987542 334556999999864
No 25
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.30 E-value=7.8e-07 Score=102.73 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=80.2
Q ss_pred cCccccccccc-ccccccccccccHHHHHHHHhccchhhhhC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHH----
Q 006503 86 QGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPES---- 159 (643)
Q Consensus 86 ~~~l~~~~~~~-~fL~sn~Tsh~~~f~AIaELIDNAiDA~~~-gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~---- 159 (643)
...+++++.-| +|+-|... ..+|.||||||+|...+ +|+.|.|.+.. + ..|+|.|||.||+.+.
T Consensus 12 L~gle~VRkRPgMYigs~~~-----~~lv~ElvdNsiDE~~ag~a~~I~V~i~~----d-~~I~V~DnGrGIp~~~h~~~ 81 (625)
T TIGR01055 12 LDGLEPVRKRPGMYTDTTRP-----NHLVQEVIDNSVDEALAGFASIIMVILHQ----D-QSIEVFDNGRGMPVDIHPKE 81 (625)
T ss_pred ecccHHhhcCCCCeeCCCCc-----ceeehhhhhcccchhhcCCCCEEEEEEeC----C-CeEEEEecCCccCccccccc
Confidence 56777777766 56644432 45899999999995444 59999999864 2 5899999999999988
Q ss_pred ----HHHhhh-cccccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 006503 160 ----LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 160 ----l~~~~~-~G~S~K~~----~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
+.-+|. +-.++|.+ ..+.|+.|+|++ +.-.++..+.|.|++.+
T Consensus 82 g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls-~vnalS~~l~v~~~r~g 133 (625)
T TIGR01055 82 GVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGIS-VVNALSKRVKIKVYRQG 133 (625)
T ss_pred CCcHHHHhhhcccccCCCCCCcceecCCCcchhHH-HHHHhcCeEEEEEEECC
Confidence 777773 44444542 257899999996 45568899999999753
No 26
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.13 E-value=4.9e-06 Score=96.08 Aligned_cols=93 Identities=20% Similarity=0.264 Sum_probs=66.9
Q ss_pred HHHHHHHhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhc-ccccccC--CCCcccccccc
Q 006503 110 FGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSL-GYSTKKA--NKTIGQYGNGF 184 (643)
Q Consensus 110 f~AIaELIDNAiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~-G~S~K~~--~~~IG~fGiGl 184 (643)
..++.|||+||+||.... ...|.|.+... ......|.|.|||.||+++++.++|.. -+++|.. ....|..|+|+
T Consensus 38 ~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GL 116 (659)
T PRK14867 38 TTIIHELVTNSLDACEEAEILPDIKVEIEKL-GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGA 116 (659)
T ss_pred HHHHHHHHHHHHHHhhccCCCceEEEEEEEC-CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccH
Confidence 368999999999995321 12677777642 122346999999999999999999973 4444532 36778899998
Q ss_pred cccc----cccCCEEEEEeeeCC
Q 006503 185 KTST----MRLGADVIVFSRATH 203 (643)
Q Consensus 185 KsAs----~~lg~~v~V~Sr~~~ 203 (643)
.++. +..|+.+.|.|+..+
T Consensus 117 a~a~~vsql~~G~pI~I~S~~g~ 139 (659)
T PRK14867 117 AGVLLFSQITTGKPLKITTSTGD 139 (659)
T ss_pred HHHHHHHHHhcCCcEEEEEEcCC
Confidence 6543 345788899998743
No 27
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.08 E-value=4.5e-06 Score=97.10 Aligned_cols=110 Identities=21% Similarity=0.235 Sum_probs=74.7
Q ss_pred cCcccccccccc-cccccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHH---
Q 006503 86 QGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL--- 160 (643)
Q Consensus 86 ~~~l~~~~~~~~-fL~sn~Tsh~~~f~AIaELIDNAiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l--- 160 (643)
...++|++.-|. |+-|... .-...++.||||||+|...+| |+.|.|.+.. + ..|+|.|||.||+.+.-
T Consensus 9 L~~lE~vr~RP~mYiGs~~~--~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---~--g~I~V~DnG~GIp~~~h~~~ 81 (654)
T TIGR01059 9 LEGLEAVRKRPGMYIGSTGE--TGLHHLVYEVVDNSIDEAMAGYCDTINVTIND---D--GSVTVEDNGRGIPVDIHPEE 81 (654)
T ss_pred ecchHHHhcCCCceeCCCCc--chHHhhhHHhhhccccccccCCCCEEEEEEeC---C--CcEEEEEeCCCcCccccCcC
Confidence 355666666664 3433332 334468899999999954447 9999998864 2 25999999999998621
Q ss_pred -----HHhhh-ccccccc----CCCCcccccccccccccccCCEEEEEeeeCC
Q 006503 161 -----RKCMS-LGYSTKK----ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 161 -----~~~~~-~G~S~K~----~~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
..+|. +..+.|. -....|+.|.|+++ .-.++..++|.|++.+
T Consensus 82 ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~-inalS~~l~v~~~~~g 133 (654)
T TIGR01059 82 GISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSV-VNALSEWLEVTVFRDG 133 (654)
T ss_pred CCCchHHheeeecccCccCCCcceecCCccchhHHH-HHHhcCeEEEEEEECC
Confidence 12333 2333333 23578999999974 5568899999999753
No 28
>PRK10364 sensor protein ZraS; Provisional
Probab=98.04 E-value=7.5e-06 Score=89.78 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=69.6
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccc
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKs 186 (643)
.....++.+||+||+++.. ....|.|.+... ++...|.|.|||.||+++.+.++|..+++.|....++|.+. .|.
T Consensus 347 ~~l~~il~NLl~NA~k~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~g~GlGL~i--v~~ 421 (457)
T PRK10364 347 DRLTQVLLNLYLNAIQAIG-QHGVISVTASES--GAGVKISVTDSGKGIAADQLEAIFTPYFTTKAEGTGLGLAV--VHN 421 (457)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCeEEEEEEEe--CCeEEEEEEECCCCCCHHHHHHHhCccccCCCCCCcccHHH--HHH
Confidence 3456789999999999843 245677777653 34578999999999999999999998888776545555555 355
Q ss_pred cccccCCEEEEEeeeC
Q 006503 187 STMRLGADVIVFSRAT 202 (643)
Q Consensus 187 As~~lg~~v~V~Sr~~ 202 (643)
..-.+|+++.+.|...
T Consensus 422 ~v~~~gG~i~i~s~~~ 437 (457)
T PRK10364 422 IVEQHGGTIQVASQEG 437 (457)
T ss_pred HHHHCCCEEEEEeCCC
Confidence 6677999999988764
No 29
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.00 E-value=8.2e-06 Score=95.83 Aligned_cols=110 Identities=20% Similarity=0.229 Sum_probs=75.3
Q ss_pred cCccccccccc-ccccccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHH-----
Q 006503 86 QGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPE----- 158 (643)
Q Consensus 86 ~~~l~~~~~~~-~fL~sn~Tsh~~~f~AIaELIDNAiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~----- 158 (643)
...++|++.-| +|+-|...- .-....+-||||||+|...+| |+.|.|.+.. + ..|+|.|||.||+.+
T Consensus 15 L~gle~VRkRPgMYIGst~~~-~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~---d--gsIsV~DnGrGIPvd~h~~~ 88 (756)
T PRK14939 15 LKGLDAVRKRPGMYIGDTDDG-TGLHHMVYEVVDNAIDEALAGHCDDITVTIHA---D--GSVSVSDNGRGIPTDIHPEE 88 (756)
T ss_pred ecccHHHhcCCCCeeCCCCCC-cchhhhhhHhhcccccccccCCCCEEEEEEcC---C--CeEEEEEcCCcccCCccccc
Confidence 45677777766 455443320 233457899999999954447 9999998864 2 389999999999987
Q ss_pred -----HHHHhhhcccccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 006503 159 -----SLRKCMSLGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 159 -----~l~~~~~~G~S~K~~----~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
++.-. .+..++|.+ .-..|+.|+|++ +.-.++..+.|.|++.+
T Consensus 89 g~~~~Elvlt-~lhAggKfd~~~ykvSgGlhGvG~s-vvNAlS~~l~v~v~r~g 140 (756)
T PRK14939 89 GVSAAEVIMT-VLHAGGKFDQNSYKVSGGLHGVGVS-VVNALSEWLELTIRRDG 140 (756)
T ss_pred CCchhhheee-eecccCCCCCCcccccCCccCccce-EeehccCeEEEEEEeCC
Confidence 22211 133333431 236799999996 45668999999999753
No 30
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.85 E-value=1.5e-05 Score=91.00 Aligned_cols=84 Identities=26% Similarity=0.348 Sum_probs=63.1
Q ss_pred HHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-------CCCCccccccc
Q 006503 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-------ANKTIGQYGNG 183 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~-------~~~~IG~fGiG 183 (643)
.++.|||-||+|| +|+.|.|.+.. ....+.|.|||.||+.+++...-..-+++|- ....+|..|-.
T Consensus 24 ~~VeElv~NSiDA---~At~V~v~V~~----~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeA 96 (1142)
T KOG1977|consen 24 QCVEELVLNSIDA---EATCVAVRVNM----ETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEA 96 (1142)
T ss_pred HHHHHHHhhcccc---CceEEEEEecC----ceeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhh
Confidence 5899999999999 99998887754 3567999999999999999876553333332 45677777765
Q ss_pred ccccccccCCEEEEEeeeCC
Q 006503 184 FKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 184 lKsAs~~lg~~v~V~Sr~~~ 203 (643)
+ |+.+--..+.|.|++.+
T Consensus 97 L--asIsd~s~l~v~skkk~ 114 (1142)
T KOG1977|consen 97 L--ASISDMSSLVVISKKKN 114 (1142)
T ss_pred h--hhhhhhhhhhhhhhhcC
Confidence 5 45555566778888753
No 31
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.84 E-value=4.1e-05 Score=84.67 Aligned_cols=90 Identities=27% Similarity=0.401 Sum_probs=68.3
Q ss_pred HHHHHHHHhccchhhhhC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccc
Q 006503 109 AFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~-gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsA 187 (643)
...++.+|++||+++... ....|.|.+.. .++...|.|.|||.||+++.+.++|..++++|....++|.+. .|..
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~--~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~g~GlGL~i--v~~i 509 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHY--RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGSNRGVGLYL--VKQS 509 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCCCCCcCcHHH--HHHH
Confidence 446899999999998532 23457776665 345568999999999999999999998888876555555544 3555
Q ss_pred ccccCCEEEEEeeeC
Q 006503 188 TMRLGADVIVFSRAT 202 (643)
Q Consensus 188 s~~lg~~v~V~Sr~~ 202 (643)
.-..|+.+.|.|...
T Consensus 510 v~~~~G~i~v~s~~~ 524 (542)
T PRK11086 510 VENLGGSIAVESEPG 524 (542)
T ss_pred HHHcCCEEEEEeCCC
Confidence 678999999998754
No 32
>PRK10604 sensor protein RstB; Provisional
Probab=97.79 E-value=4.7e-05 Score=83.47 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=67.3
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC-CCCcccccccc--
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGF-- 184 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~-~~~IG~fGiGl-- 184 (643)
+.-.++.+||+||+.+ +...|.|.+... ++...|.|.|||.||+++++.++|...+..... ...-|-+|+|+
T Consensus 319 ~l~~vl~NLl~NAik~---~~~~I~I~~~~~--~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~i 393 (433)
T PRK10604 319 LMERVLDNLLNNALRY---AHSRVRVSLLLD--GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAI 393 (433)
T ss_pred HHHHHHHHHHHHHHHh---CCCeEEEEEEEE--CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHH
Confidence 4556899999999998 456777777653 345689999999999999999999855543321 22234568886
Q ss_pred -cccccccCCEEEEEeeeCC
Q 006503 185 -KTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~~~ 203 (643)
|...-.+|+++.|.+...+
T Consensus 394 vk~i~~~~gG~i~v~s~~~~ 413 (433)
T PRK10604 394 VHSIALAMGGSVNCDESELG 413 (433)
T ss_pred HHHHHHHCCCEEEEEecCCC
Confidence 4456779999999988643
No 33
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.75 E-value=6e-05 Score=81.23 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=65.4
Q ss_pred HHHHHHHHhccchhhhhCC---CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc---CCCCcccccc
Q 006503 109 AFGAIAELLDNAVDEVQNG---ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK---ANKTIGQYGN 182 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~g---At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~---~~~~IG~fGi 182 (643)
.-.++.+|+.||+++...+ ...|.|.... .++...|+|.|||.||+++...++|...++.|. ...++|.|-
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~--~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~G~GlGL~i- 464 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTAL--NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGSRKHIGMGLSV- 464 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCCCCCCcccHHH-
Confidence 3468999999999985433 1235554433 345678999999999999999999996666654 234444444
Q ss_pred cccccccccCCEEEEEeeeCCC
Q 006503 183 GFKTSTMRLGADVIVFSRATHE 204 (643)
Q Consensus 183 GlKsAs~~lg~~v~V~Sr~~~~ 204 (643)
.|...-.+|+.+.|.|...+|
T Consensus 465 -~~~iv~~~gG~i~~~s~~~~G 485 (494)
T TIGR02938 465 -AQEIVADHGGIIDLDDDYSEG 485 (494)
T ss_pred -HHHHHHHcCCEEEEEECCCCC
Confidence 245566799999999887543
No 34
>PRK09303 adaptive-response sensory kinase; Validated
Probab=97.74 E-value=8.7e-05 Score=80.28 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=65.9
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc---
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF--- 184 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGl--- 184 (643)
....+|.+||+||+.+... ...|.|.+... .++...|.|.|||.||+++++.++|...++.+. ...-+-+|+|+
T Consensus 272 ~l~qvl~NLl~NAik~~~~-~~~I~i~~~~~-~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~-~~~~~G~GLGL~i~ 348 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTPE-GGTITLSMLHR-TTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR-DEGTEGYGIGLSVC 348 (380)
T ss_pred HHHHHHHHHHHHHHhcCCC-CceEEEEEEec-CCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC-CCCCCcccccHHHH
Confidence 3457999999999998322 23566655431 234467999999999999999999986665543 22223467776
Q ss_pred cccccccCCEEEEEeeeCCC
Q 006503 185 KTSTMRLGADVIVFSRATHE 204 (643)
Q Consensus 185 KsAs~~lg~~v~V~Sr~~~~ 204 (643)
+...-.+|+.+.|.|...+|
T Consensus 349 ~~iv~~~gG~i~v~s~~~~G 368 (380)
T PRK09303 349 RRIVRVHYGQIWVDSEPGQG 368 (380)
T ss_pred HHHHHHcCCEEEEEecCCCc
Confidence 33456799999999987543
No 35
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=97.72 E-value=7.1e-05 Score=83.65 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=66.4
Q ss_pred HHHHHHHHhccchhhhhC---CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc-
Q 006503 109 AFGAIAELLDNAVDEVQN---GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF- 184 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~---gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGl- 184 (643)
...++.+||+||+++... +...|.|.+.. .++...|.|.|||.||+++...++|..|+++|... .|-.|+|+
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~--~~g~GlGL~ 508 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSD--EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADE--PGEHGIGLY 508 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE--CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC--CCCceeCHH
Confidence 345789999999998632 34567776654 34556799999999999999999999888876521 22235555
Q ss_pred --cccccccCCEEEEEeeeC
Q 006503 185 --KTSTMRLGADVIVFSRAT 202 (643)
Q Consensus 185 --KsAs~~lg~~v~V~Sr~~ 202 (643)
|...-..|+.+.|.|...
T Consensus 509 ivk~iv~~~~G~i~v~s~~~ 528 (545)
T PRK15053 509 LIASYVTRCGGVITLEDNDP 528 (545)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 445567899999988864
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=97.68 E-value=6.7e-05 Score=82.74 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=67.7
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCC-CeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccc
Q 006503 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNS-PALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~-~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsA 187 (643)
...++.+||+||+.+... ...|.|.+... ++. ..|.|.|||.||+++.+.+.|..+++.+....++|.++ .+..
T Consensus 501 l~~~~~nli~na~~~~~~-~~~i~v~~~~~--~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~~g~glGL~~--~~~~ 575 (607)
T PRK11360 501 LKQVLLNILINAVQAISA-RGKIRIRTWQY--SDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAKGTGLGLAL--SQRI 575 (607)
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEEEEc--CCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCCCCCchhHHH--HHHH
Confidence 556899999999998533 33566766542 233 78999999999999999999998877766556667666 3455
Q ss_pred ccccCCEEEEEeeeC
Q 006503 188 TMRLGADVIVFSRAT 202 (643)
Q Consensus 188 s~~lg~~v~V~Sr~~ 202 (643)
...+|+++.|.|...
T Consensus 576 ~~~~~G~i~~~s~~~ 590 (607)
T PRK11360 576 INAHGGDIEVESEPG 590 (607)
T ss_pred HHHcCCEEEEEEcCC
Confidence 567899999988864
No 37
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.66 E-value=0.00017 Score=60.93 Aligned_cols=90 Identities=23% Similarity=0.323 Sum_probs=62.6
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccc--
Q 006503 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT-- 186 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKs-- 186 (643)
...++.|+++||+++... ...|.|.+.. .++...|.|.|+|.||+.+.+...+..+++.+......+.+|+|++.
T Consensus 6 l~~~~~~l~~n~~~~~~~-~~~v~i~~~~--~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~gl~~~~ 82 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPE-GGRITVTLER--DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGRSRKIGGTGLGLSIVK 82 (111)
T ss_pred HHHHHHHHHHHHHhcCCC-CCeEEEEEEE--cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCCCCCCCCcccccHHHHH
Confidence 345899999999998321 2467776664 34567899999999999999999887665544222334567888753
Q ss_pred -cccccCCEEEEEeee
Q 006503 187 -STMRLGADVIVFSRA 201 (643)
Q Consensus 187 -As~~lg~~v~V~Sr~ 201 (643)
....++.++.+.+..
T Consensus 83 ~~~~~~~g~~~~~~~~ 98 (111)
T smart00387 83 KLVELHGGEISVESEP 98 (111)
T ss_pred HHHHHcCCEEEEEecC
Confidence 344577777776553
No 38
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.63 E-value=9.7e-05 Score=80.55 Aligned_cols=93 Identities=22% Similarity=0.286 Sum_probs=65.4
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCcccccccc--
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGF-- 184 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~-~~~~IG~fGiGl-- 184 (643)
....++.+||+||+++... ...|.|.+.. .++...|.|.|||.||+++.+.++|...++.+. .....|-.|+|+
T Consensus 317 ~l~~vl~NLl~NAik~~~~-~~~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i 393 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPE-GTHITVRWQR--VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAI 393 (430)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCeEEEEEEE--cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHH
Confidence 4567899999999998322 3456666654 234567999999999999999999986554332 122223446665
Q ss_pred -cccccccCCEEEEEeeeCC
Q 006503 185 -KTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~~~ 203 (643)
|......|+.+.|.|...+
T Consensus 394 vk~iv~~~gG~i~i~s~~~~ 413 (430)
T PRK11006 394 VKHALSHHDSRLEIESEVGK 413 (430)
T ss_pred HHHHHHHCCCEEEEEecCCC
Confidence 3445678999999988643
No 39
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.62 E-value=0.00012 Score=79.36 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=65.3
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC-CCCccccccccc-
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK- 185 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~-~~~IG~fGiGlK- 185 (643)
+...++.+||+||+.+ +...|.|.+... ++...|+|.|||.||+++.+.+.+...++.... ...-+-+|+|+.
T Consensus 353 ~l~~~l~nli~NA~~~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~i 427 (461)
T PRK09470 353 ALASALENIVRNALRY---SHTKIEVAFSVD--KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAI 427 (461)
T ss_pred HHHHHHHHHHHHHHHh---CCCcEEEEEEEE--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHH
Confidence 3456899999999998 456677777653 345679999999999999999999865543321 122344566653
Q ss_pred --ccccccCCEEEEEeeeCC
Q 006503 186 --TSTMRLGADVIVFSRATH 203 (643)
Q Consensus 186 --sAs~~lg~~v~V~Sr~~~ 203 (643)
.....+++.+.+.|...+
T Consensus 428 v~~~v~~~~G~l~~~s~~~~ 447 (461)
T PRK09470 428 VENAIQQHRGWVKAEDSPLG 447 (461)
T ss_pred HHHHHHHCCCEEEEEECCCC
Confidence 345678999999887654
No 40
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.61 E-value=0.00017 Score=59.90 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=59.3
Q ss_pred HHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccc---
Q 006503 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS--- 187 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsA--- 187 (643)
.++.|||+||+++.......|.|.+.. .++...|.|.|+|.||++..+.+.+..... .......+.+|+|++.+
T Consensus 3 ~~~~~ll~Na~~~~~~~~~~v~i~~~~--~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~gl~~~~~~ 79 (103)
T cd00075 3 QVLLNLLSNAIKHTPEGGGRITISVER--DGDHLEIRVEDNGPGIPEEDLERIFERFSD-GSRSRKGGGTGLGLSIVKKL 79 (103)
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHHhhhhhc-CCCCCCCCccccCHHHHHHH
Confidence 489999999999842212456666654 334578999999999999999887763211 11223445678887642
Q ss_pred ccccCCEEEEEeee
Q 006503 188 TMRLGADVIVFSRA 201 (643)
Q Consensus 188 s~~lg~~v~V~Sr~ 201 (643)
..+++..+.+.+..
T Consensus 80 ~~~~~g~~~~~~~~ 93 (103)
T cd00075 80 VELHGGRIEVESEP 93 (103)
T ss_pred HHHcCCEEEEEeCC
Confidence 44567788887765
No 41
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.59 E-value=0.00011 Score=79.29 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=63.0
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCC-CCcccccccc--
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKAN-KTIGQYGNGF-- 184 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~-~~IG~fGiGl-- 184 (643)
....++.|||+||+.+.. ....|.|.+.. .++...|+|.|||.||+++.+.++|..+++.+... ..-+-.|+|+
T Consensus 353 ~l~~~~~nll~Nai~~~~-~~~~I~i~~~~--~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i 429 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTP-DGGTITVRIER--RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAI 429 (457)
T ss_pred HHHHHHHHHHHHHHHcCC-CCceEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHH
Confidence 456789999999999821 13467777765 34556899999999999999999998666544311 1122345554
Q ss_pred -cccccccCCEEEEEe
Q 006503 185 -KTSTMRLGADVIVFS 199 (643)
Q Consensus 185 -KsAs~~lg~~v~V~S 199 (643)
+....++|+.+.+.+
T Consensus 430 ~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 430 VRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHCCCEEEEEe
Confidence 445567899999998
No 42
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.59 E-value=0.00016 Score=78.16 Aligned_cols=90 Identities=21% Similarity=0.179 Sum_probs=64.6
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc--
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK-- 185 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlK-- 185 (643)
+...++.+||+||+.+ +...|.|.+... ++...|+|.|||.||+++++.+++..++....... -+-+|+|+.
T Consensus 331 ~l~~il~NLl~NA~k~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~~-~~g~GlGL~iv 404 (435)
T PRK09467 331 AIKRALANLVVNAARY---GNGWIKVSSGTE--GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSARG-SSGTGLGLAIV 404 (435)
T ss_pred HHHHHHHHHHHHHHHh---CCCeEEEEEEec--CCEEEEEEEecCCCcCHHHHHHhcCCcccCCCCCC-CCCeehhHHHH
Confidence 3456899999999987 566777777652 34567999999999999999999986664322211 234677763
Q ss_pred -ccccccCCEEEEEeeeCC
Q 006503 186 -TSTMRLGADVIVFSRATH 203 (643)
Q Consensus 186 -sAs~~lg~~v~V~Sr~~~ 203 (643)
...-.+|+++.+.+...+
T Consensus 405 ~~i~~~~~g~l~i~~~~~~ 423 (435)
T PRK09467 405 KRIVDQHNGKVELGNSEEG 423 (435)
T ss_pred HHHHHHCCCEEEEEECCCC
Confidence 334567899999887643
No 43
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.58 E-value=0.00012 Score=73.18 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=64.8
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCC--CCcccccccc
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKAN--KTIGQYGNGF 184 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~--~~IG~fGiGl 184 (643)
.|.-.++.+||+||++|.. ...|.|.+... ++...|.|.|||.||+++.+.++|..+++.+... .++|.+. .
T Consensus 227 ~~l~~vl~nLi~NAi~~~~--~~~i~i~~~~~--~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~g~GlGL~i--~ 300 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTP--GGEITISVRQD--DEQVTISVEDTGPGIPEEELERIFEPFFRTDKSRSGTGLGLAI--V 300 (336)
T ss_pred HHHHHHHHHHHHHHhccCC--CCeEEEEEEec--CCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCCCCCccHHH--H
Confidence 4555699999999999932 46777877652 2246899999999999999999999888877642 3444444 2
Q ss_pred cccccccCCEEEEEeee
Q 006503 185 KTSTMRLGADVIVFSRA 201 (643)
Q Consensus 185 KsAs~~lg~~v~V~Sr~ 201 (643)
|...-..|+.+.+.|..
T Consensus 301 ~~~~~~~~g~i~~~~~~ 317 (336)
T COG0642 301 KRIVELHGGTISVESEP 317 (336)
T ss_pred HHHHHHcCCEEEEEecC
Confidence 33345667777777776
No 44
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.56 E-value=9.9e-05 Score=77.99 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=65.1
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc--
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF-- 184 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGl-- 184 (643)
.|.-.++.+||+||+.+.. ....|.|.+.. .++...|.|.|||.||+++++.+++..++..+. .-+-.|+|+
T Consensus 246 ~~l~~il~nLi~NA~k~~~-~~~~I~I~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~g~GlGL~i 319 (356)
T PRK10755 246 TLLRLLLRNLVENAHRYSP-EGSTITIKLSQ--EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS---RYGGIGLGLSI 319 (356)
T ss_pred HHHHHHHHHHHHHHHhhCC-CCCcEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC---CCCCcCHHHHH
Confidence 4666799999999998732 23557777754 345578999999999999999999986553322 112346665
Q ss_pred -cccccccCCEEEEEeeeC
Q 006503 185 -KTSTMRLGADVIVFSRAT 202 (643)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~~ 202 (643)
+.....+|+.+.+.|...
T Consensus 320 ~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 320 VSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHCCCEEEEEECCC
Confidence 344567899999999875
No 45
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.51 E-value=5.5e-05 Score=86.29 Aligned_cols=111 Identities=21% Similarity=0.243 Sum_probs=75.1
Q ss_pred cCccccccccc-ccccccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHH----
Q 006503 86 QGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES---- 159 (643)
Q Consensus 86 ~~~l~~~~~~~-~fL~sn~Tsh~~~f~AIaELIDNAiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~---- 159 (643)
...|++++.-| +|+-|-... .-+...+-|+||||+|...+| |+.|.|.+.. ...|+|.|||.||+-+-
T Consensus 14 L~GLEaVRkRPGMYIGst~~~-~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~-----d~sisV~DnGRGIPvdiH~~~ 87 (635)
T COG0187 14 LEGLEAVRKRPGMYIGSTGDG-RGLHHLVWEVVDNSIDEALAGYADRIDVTLHE-----DGSISVEDNGRGIPVDIHPKE 87 (635)
T ss_pred ccCcHHhhcCCCceeccCCCC-CcceeeEeEeeechHhHHhhCcCcEEEEEEcC-----CCeEEEEECCCCCccccCCCC
Confidence 45666666554 454432220 122235679999999987665 8988888864 35899999999999766
Q ss_pred ----HHHhhh-cccccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 006503 160 ----LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 160 ----l~~~~~-~G~S~K~~----~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
++-+|+ +-...|.+ ...-|+.|+|.+ +.=.|...+.|.+++.+
T Consensus 88 ~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~S-VVNALS~~l~v~v~r~g 139 (635)
T COG0187 88 KVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVS-VVNALSTWLEVEVKRDG 139 (635)
T ss_pred CCCceEEEEEeeccCcccCCCccEeecCCCccceE-EEecccceEEEEEEECC
Confidence 333454 33333432 234689999974 66779999999999864
No 46
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=97.50 E-value=0.00017 Score=75.55 Aligned_cols=92 Identities=10% Similarity=0.095 Sum_probs=63.5
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEcc----CCC----CCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccc
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIM----KDN----SPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQ 179 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~----~~~----~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~ 179 (643)
....++.+||+||+++.......|.|...... .++ ...|.|.|||.||+++.+.++|..+++.+....++|.
T Consensus 237 ~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~~g~GlGL 316 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGREGGTGLGL 316 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCCCCccCCH
Confidence 34578999999999985323445666543210 001 1368999999999999999999877776654444444
Q ss_pred ccccccccccccCCEEEEEeee
Q 006503 180 YGNGFKTSTMRLGADVIVFSRA 201 (643)
Q Consensus 180 fGiGlKsAs~~lg~~v~V~Sr~ 201 (643)
+- .|......|+.+.|.|..
T Consensus 317 ~i--~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 317 SI--ARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred HH--HHHHHHHcCCeEEEEecC
Confidence 44 255567789999999875
No 47
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.49 E-value=0.0002 Score=77.37 Aligned_cols=94 Identities=21% Similarity=0.226 Sum_probs=65.8
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc--
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF-- 184 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGl-- 184 (643)
.++..++.+||.||+.+. .....|.|.+.. .++...|+|.|||.||+++++.+.|..+++.+.....-+-.|+|+
T Consensus 367 ~~l~~vl~nli~Na~~~~-~~~~~i~i~~~~--~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i 443 (475)
T PRK11100 367 FLLRQALGNLLDNAIDFS-PEGGTITLSAEV--DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAF 443 (475)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHH
Confidence 356679999999999972 124567777765 345678999999999999999999986665433111112235554
Q ss_pred -cccccccCCEEEEEeeeCC
Q 006503 185 -KTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~~~ 203 (643)
+.-...+|+.+.+.|...+
T Consensus 444 ~~~~~~~~~G~i~i~s~~~~ 463 (475)
T PRK11100 444 VREVARLHGGEVTLRNRPEG 463 (475)
T ss_pred HHHHHHHCCCEEEEEEcCCC
Confidence 3345678999999987643
No 48
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.46 E-value=0.00014 Score=84.66 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=64.3
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHH-HHHhhhcccccccCCCCccccccccccc
Q 006503 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPES-LRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~-l~~~~~~G~S~K~~~~~IG~fGiGlKsA 187 (643)
...++.+||+||+++.. ....|.|.+... ++...|.|.|||.||+++. ..+.|...++.+....++|.+- .|..
T Consensus 580 l~~vl~nLl~NAik~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~~G~GLGL~i--~~~i 654 (679)
T TIGR02916 580 LERVLGHLVQNALEATP-GEGRVAIRVERE--CGAARIEIEDSGCGMSPAFIRERLFKPFDTTKGAGMGIGVYE--CRQY 654 (679)
T ss_pred HHHHHHHHHHHHHHhCC-CCCcEEEEEEEc--CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCCCCcchhHHH--HHHH
Confidence 44588999999999832 234577777652 3567899999999999999 6788887777665333333333 2444
Q ss_pred ccccCCEEEEEeeeCC
Q 006503 188 TMRLGADVIVFSRATH 203 (643)
Q Consensus 188 s~~lg~~v~V~Sr~~~ 203 (643)
.-.+|+++.|.|...+
T Consensus 655 v~~~gG~i~v~s~~g~ 670 (679)
T TIGR02916 655 VEEIGGRIEVESTPGQ 670 (679)
T ss_pred HHHcCCEEEEEecCCC
Confidence 5679999999997643
No 49
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.44 E-value=0.00023 Score=77.49 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=65.8
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCccccccccc-
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGFK- 185 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~-~~~~IG~fGiGlK- 185 (643)
....++.+||+||+.+.. ....|.|.+.. .++...|.|.|||.||+++++.+.+...++.+. .....|-.|+|+.
T Consensus 352 ~l~qvl~nll~NAi~~~~-~~~~I~i~~~~--~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 428 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTD-SGGSLHISAEQ--RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAI 428 (466)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEEEE--cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHH
Confidence 355689999999999832 13457777665 345567999999999999999999985554433 2223345577753
Q ss_pred --ccccccCCEEEEEeeeCC
Q 006503 186 --TSTMRLGADVIVFSRATH 203 (643)
Q Consensus 186 --sAs~~lg~~v~V~Sr~~~ 203 (643)
.....+|+.+.+.+...+
T Consensus 429 v~~i~~~~~G~l~~~s~~~~ 448 (466)
T PRK10549 429 CLNIVEAHNGRIIAAHSPFG 448 (466)
T ss_pred HHHHHHHcCCEEEEEECCCC
Confidence 345678999999988643
No 50
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.40 E-value=0.00029 Score=79.03 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=63.1
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc---
Q 006503 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK--- 185 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlK--- 185 (643)
...++.+||+||+.+ ....|.|.+.. .++...|.|.|||.||+++.+.++|..++..+... +-.|+|+.
T Consensus 379 l~~vl~NLi~NAik~---~~~~i~I~~~~--~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~~---~G~GLGL~Ivk 450 (485)
T PRK10815 379 FMEVMGNVLDNACKY---CLEFVEISARQ--TDEHLHIVVEDDGPGIPESKRELIFDRGQRADTLR---PGQGLGLSVAR 450 (485)
T ss_pred HHHHHHHHHHHHHHh---cCCcEEEEEEE--eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCC---CCcchhHHHHH
Confidence 346899999999998 34456676654 23456799999999999999999998666433211 12466653
Q ss_pred ccccccCCEEEEEeeeCC
Q 006503 186 TSTMRLGADVIVFSRATH 203 (643)
Q Consensus 186 sAs~~lg~~v~V~Sr~~~ 203 (643)
...-.+|+++.|.|...+
T Consensus 451 ~iv~~~gG~i~v~s~~~~ 468 (485)
T PRK10815 451 EITEQYEGKISAGDSPLG 468 (485)
T ss_pred HHHHHcCCEEEEEECCCC
Confidence 445678999999988754
No 51
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.39 E-value=0.00039 Score=70.95 Aligned_cols=94 Identities=20% Similarity=0.233 Sum_probs=63.7
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCccccccccc
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGFK 185 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~-~~~~IG~fGiGlK 185 (643)
.....++.+||.||+++... ...|.|.+.. .++...|.|.|||.||+++.+.++|...++.+. .....+-.|+|+.
T Consensus 228 ~~l~~vl~nll~Nai~~~~~-~~~i~i~~~~--~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~ 304 (333)
T TIGR02966 228 DELRSAFSNLVSNAIKYTPE-GGTITVRWRR--DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLA 304 (333)
T ss_pred HHHHHHHHHHHHHhheeCCC-CCeEEEEEEE--cCCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHH
Confidence 34566899999999998322 3456666654 234568999999999999999999986553322 1111122356653
Q ss_pred ---ccccccCCEEEEEeeeCC
Q 006503 186 ---TSTMRLGADVIVFSRATH 203 (643)
Q Consensus 186 ---sAs~~lg~~v~V~Sr~~~ 203 (643)
...-.+|+++.+.|....
T Consensus 305 ~~~~~~~~~gG~i~~~s~~~~ 325 (333)
T TIGR02966 305 IVKHVLSRHHARLEIESELGK 325 (333)
T ss_pred HHHHHHHHCCCEEEEEecCCC
Confidence 345568999999998643
No 52
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.38 E-value=0.00036 Score=83.13 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=64.9
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEc-------------cCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCC
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNI-------------MKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKAN 174 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~-------------~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~ 174 (643)
....++.+||+||+++.. ....|.|.+... ..++...|.|.|||.||+++.+.++|...++.+.
T Consensus 560 ~L~qvl~NLl~NAik~~~-~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~-- 636 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMD-GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA-- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHcc-cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC--
Confidence 456789999999999843 234577766543 1134457999999999999999999987666554
Q ss_pred CCcccccccc---cccccccCCEEEEEeeeC
Q 006503 175 KTIGQYGNGF---KTSTMRLGADVIVFSRAT 202 (643)
Q Consensus 175 ~~IG~fGiGl---KsAs~~lg~~v~V~Sr~~ 202 (643)
+-.|+|+ |...-.+|+.+.|.|...
T Consensus 637 ---~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 637 ---GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred ---CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 3345554 445667999999999864
No 53
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.29 E-value=0.0008 Score=83.48 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=60.9
Q ss_pred HHHHHHHhccchhhh-hC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--------Hhhh-cccccccC----C
Q 006503 110 FGAIAELLDNAVDEV-QN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA----N 174 (643)
Q Consensus 110 f~AIaELIDNAiDA~-~~-gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~--------~~~~-~G~S~K~~----~ 174 (643)
.-.+-|+||||+|.. .+ .++.|.|.|.. ....|+|.|||.||+-+--. -+|+ +-.++|.+ .
T Consensus 79 ~kifdEIldNAvDe~~r~g~~~~I~V~I~~----~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yK 154 (1465)
T PLN03237 79 YKIFDEILVNAADNKQRDPKMDSLRVVIDV----EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKK 154 (1465)
T ss_pred hhhHHHHhhhhHhHHhhcCCCCEEEEEEEc----CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcce
Confidence 467899999999975 32 36888888864 23589999999999865221 1232 23344442 2
Q ss_pred CCcccccccccccccccCCEEEEEeee
Q 006503 175 KTIGQYGNGFKTSTMRLGADVIVFSRA 201 (643)
Q Consensus 175 ~~IG~fGiGlKsAs~~lg~~v~V~Sr~ 201 (643)
..-|+.|+|.|. +-.|...+.|.++.
T Consensus 155 vSGGlhGVGasv-vNaLS~~f~Vev~D 180 (1465)
T PLN03237 155 TTGGRNGYGAKL-TNIFSTEFVIETAD 180 (1465)
T ss_pred eeccccccCccc-cccccCeeEEEEEE
Confidence 468999999874 55588899998873
No 54
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.13 E-value=0.00082 Score=79.86 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=63.8
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc--
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK-- 185 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlK-- 185 (643)
+...+|.+||+||+.+.. ...|.|.+.. .++...|+|.|||.||+++++.++|...+..+.. .|-.|+|+.
T Consensus 513 ~l~~il~NLl~NAik~~~--~g~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~ 585 (921)
T PRK15347 513 RLRQILVNLLGNAVKFTE--TGGIRLRVKR--HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTH---SQGTGLGLTIA 585 (921)
T ss_pred HHHHHHHHHHHHHhhcCC--CCCEEEEEEE--cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCCC---CCCCchHHHHH
Confidence 455799999999999842 3447776654 2356789999999999999999999855544321 233466653
Q ss_pred -ccccccCCEEEEEeeeCC
Q 006503 186 -TSTMRLGADVIVFSRATH 203 (643)
Q Consensus 186 -sAs~~lg~~v~V~Sr~~~ 203 (643)
...-.+|+.+.|.|....
T Consensus 586 ~~~~~~~gG~i~i~s~~~~ 604 (921)
T PRK15347 586 SSLAKMMGGELTLFSTPGV 604 (921)
T ss_pred HHHHHHcCCEEEEEecCCC
Confidence 345578999999887643
No 55
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=97.10 E-value=0.001 Score=78.19 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=66.0
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCccccccccc-
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGFK- 185 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~-~~~~IG~fGiGlK- 185 (643)
+...++.+||+||+++... ...|.|.+.. .++...|+|.|||.||+++.+.++|...++.+. ....-+-.|+|+.
T Consensus 597 ~L~~il~NLI~NAik~s~~-~~~I~I~~~~--~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~I 673 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSPE-DGLIEVGLSQ--NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYI 673 (703)
T ss_pred HHHHHHHHHHHHHHHHCCC-CCeEEEEEEE--cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHH
Confidence 4456899999999998432 3447776665 345567999999999999999999987665543 2122223577763
Q ss_pred --ccccccCCEEEEEeeeC
Q 006503 186 --TSTMRLGADVIVFSRAT 202 (643)
Q Consensus 186 --sAs~~lg~~v~V~Sr~~ 202 (643)
.....+|+.+.+.+...
T Consensus 674 vr~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 674 VRLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 45667899999988764
No 56
>PRK10490 sensor protein KdpD; Provisional
Probab=97.10 E-value=0.00077 Score=81.33 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=64.8
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc---
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF--- 184 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGl--- 184 (643)
....++.+||+||+.+.. ....|.|.+.. .++...|.|.|||.||+++++.++|...++.+... ..+-.|+|+
T Consensus 778 ~L~qVL~NLL~NAik~s~-~g~~I~I~~~~--~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~-~~~G~GLGL~Iv 853 (895)
T PRK10490 778 LFERVLINLLENAVKYAG-AQAEIGIDAHV--EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKES-AIPGVGLGLAIC 853 (895)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCeEEEEEEE--eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCC-CCCCccHHHHHH
Confidence 456789999999999832 23456776654 23556899999999999999999998655544321 112246665
Q ss_pred cccccccCCEEEEEeeeCC
Q 006503 185 KTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 185 KsAs~~lg~~v~V~Sr~~~ 203 (643)
|...-.+|+++.+.|...+
T Consensus 854 k~ive~hGG~I~v~s~~~~ 872 (895)
T PRK10490 854 RAIVEVHGGTIWAENRPEG 872 (895)
T ss_pred HHHHHHcCCEEEEEECCCC
Confidence 3445678999999987643
No 57
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=97.09 E-value=0.00022 Score=84.75 Aligned_cols=119 Identities=23% Similarity=0.244 Sum_probs=77.3
Q ss_pred cccccCccccCCCcCccccccccc-ccccccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEE
Q 006503 73 TYAANITIKSTPVQGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFID 150 (643)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~~~~~-~fL~sn~Tsh~~~f~AIaELIDNAiDA~~~g-At~V~I~i~~~~~~~~~~I~I~D 150 (643)
+|+. . .......+++++.-| +|+-|-. ..-....+-|+||||+|...+| ++.|.|.+.. ...|+|.|
T Consensus 99 ~Y~a-~---~I~vLeGLEaVRkRPGMYIGst~--~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~-----DgsItV~D 167 (903)
T PTZ00109 99 EYDA-D---DIVVLEGLEAVRKRPGMYIGNTD--EKGLHQLLFEILDNSVDEYLAGECNKITVVLHK-----DGSVEISD 167 (903)
T ss_pred CCCh-H---hCeehhccHHHhcCCCceeCCCC--CCcceEEEEEEeeccchhhccCCCcEEEEEEcC-----CCeEEEEe
Confidence 5777 2 222356788888776 4443322 2223345679999999977665 8888888864 24799999
Q ss_pred CCCCCCHHHHHH--------hhh-------cccc-------------------cc-------------------cCCCCc
Q 006503 151 DGGGMDPESLRK--------CMS-------LGYS-------------------TK-------------------KANKTI 177 (643)
Q Consensus 151 NG~GMs~~~l~~--------~~~-------~G~S-------------------~K-------------------~~~~~I 177 (643)
||.||+-+.-.. +|+ |+.. .| .=...-
T Consensus 168 nGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSG 247 (903)
T PTZ00109 168 NGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSS 247 (903)
T ss_pred CCccccccccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecC
Confidence 999998743321 121 2221 00 001367
Q ss_pred ccccccccccccccCCEEEEEeeeCC
Q 006503 178 GQYGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 178 G~fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
|+.|+|.+ ++=.|...+.|.+++.+
T Consensus 248 GLHGVG~S-VVNALS~~l~VeV~RdG 272 (903)
T PTZ00109 248 GLHGVGLS-VVNALSSFLKVDVFKGG 272 (903)
T ss_pred cCCCccee-eeeeccCeEEEEEEECC
Confidence 99999985 56679999999999853
No 58
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.06 E-value=0.00062 Score=79.28 Aligned_cols=110 Identities=23% Similarity=0.239 Sum_probs=72.0
Q ss_pred cCccccccccc-ccccccccccccHHHHHHHHhccchhhhhC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--
Q 006503 86 QGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR-- 161 (643)
Q Consensus 86 ~~~l~~~~~~~-~fL~sn~Tsh~~~f~AIaELIDNAiDA~~~-gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~-- 161 (643)
...++|++.-| +|+-|... .-....+-|+||||+|...+ .++.|.|.+.. ...|+|.|||.||+.+.-.
T Consensus 13 L~glE~VRkRPgMYIGst~~--~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~-----dgsitV~DnGrGIPv~~h~~~ 85 (637)
T TIGR01058 13 LEGLDAVRKRPGMYIGSTDS--KGLHHLVWEIVDNSVDEVLAGYADNITVTLHK-----DNSITVQDDGRGIPTGIHQDG 85 (637)
T ss_pred ecccHHHhcCCCCeECCCCc--chhheehhhhhcchhhhhhcCCCcEEEEEEcC-----CCeEEEEECCCcccCcccCcC
Confidence 45677777766 45554332 22233567999999996544 48888888863 2489999999999864221
Q ss_pred ------Hhhh-cccccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 006503 162 ------KCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 162 ------~~~~-~G~S~K~~----~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~~ 203 (643)
-+|. +-.+.|.+ ...-|+.|+|.+ +.-.|...+.|.+++.+
T Consensus 86 ~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~s-vvNAlS~~~~V~v~r~g 137 (637)
T TIGR01058 86 NISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGAS-VVNALSSWLEVTVKRDG 137 (637)
T ss_pred CCccceeEEEEecccCcCCCCcccccCCccccccc-ccceeeceEEEEEEECC
Confidence 1232 22223331 245699999986 45668899999998753
No 59
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.05 E-value=0.0012 Score=78.21 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=61.7
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccC-CC--CCeEEEEECCCCCCHHHHHHhhhccccc-ccCCCCccccccc
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMK-DN--SPALVFIDDGGGMDPESLRKCMSLGYST-KKANKTIGQYGNG 183 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~-~~--~~~I~I~DNG~GMs~~~l~~~~~~G~S~-K~~~~~IG~fGiG 183 (643)
+...++.+||+||+.+... ..|.|.+..... ++ ...|.|.|||.||+++++.++|...+.. +......|-.|+|
T Consensus 408 ~l~~vl~NLl~NAik~~~~--g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLG 485 (919)
T PRK11107 408 RLQQIITNLVGNAIKFTES--GNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHHhhcCCC--CcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchh
Confidence 4556899999999998432 334444432111 11 3568999999999999999998743322 1112223445666
Q ss_pred c---cccccccCCEEEEEeeeCCC
Q 006503 184 F---KTSTMRLGADVIVFSRATHE 204 (643)
Q Consensus 184 l---KsAs~~lg~~v~V~Sr~~~~ 204 (643)
+ |...-.+|+++.|.|...+|
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~G 509 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNRG 509 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCC
Confidence 5 34456689999999987543
No 60
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=97.05 E-value=0.00098 Score=78.36 Aligned_cols=93 Identities=23% Similarity=0.219 Sum_probs=65.4
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc--CCCCcccccccc-
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK--ANKTIGQYGNGF- 184 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~--~~~~IG~fGiGl- 184 (643)
....++.+||+||+++. ....|.|.+.... ++...|.|.|||.||+++++.++|...++.|. .....+--|+|+
T Consensus 398 ~l~qvl~NLl~NAik~~--~~g~v~i~~~~~~-~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~ 474 (779)
T PRK11091 398 RLRQILWNLISNAVKFT--QQGGVTVRVRYEE-GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLA 474 (779)
T ss_pred HHHHHHHHHHHHHHHhC--CCCcEEEEEEEcc-CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHH
Confidence 34578999999999984 2345666665521 34568999999999999999999986655542 112233346665
Q ss_pred --cccccccCCEEEEEeeeCC
Q 006503 185 --KTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 185 --KsAs~~lg~~v~V~Sr~~~ 203 (643)
|...-.+|+.+.|.|....
T Consensus 475 i~~~iv~~~gG~i~v~s~~g~ 495 (779)
T PRK11091 475 VSKRLAQAMGGDITVTSEEGK 495 (779)
T ss_pred HHHHHHHHcCCEEEEEecCCC
Confidence 3445678999999998643
No 61
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=97.04 E-value=0.00075 Score=76.79 Aligned_cols=88 Identities=23% Similarity=0.358 Sum_probs=65.1
Q ss_pred HHHHHHhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc---c
Q 006503 111 GAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK---T 186 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlK---s 186 (643)
..+.+||.||+||+..- ...|+|.... .++...|+|.|||+||.++.+.++|..-+++|....++ |+|+- .
T Consensus 500 QVLvNLl~NALDA~~~~~~~~i~i~~~~--~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~~GL---GLGLaIS~~ 574 (603)
T COG4191 500 QVLVNLLQNALDAMAGQEDRRLSIRAQR--EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPVGKGL---GLGLAISQN 574 (603)
T ss_pred HHHHHHHHHHHHHhcCCCCCeeEEEEEe--cCCeEEEEEccCCCCCCHHHHHhhcCCccccCcccCCc---chhHHHHHH
Confidence 68999999999997532 4567777765 45678899999999999999999999777777543333 33432 2
Q ss_pred cccccCCEEEEEeeeCC
Q 006503 187 STMRLGADVIVFSRATH 203 (643)
Q Consensus 187 As~~lg~~v~V~Sr~~~ 203 (643)
..-.+|+.+.|.+-..+
T Consensus 575 i~~d~GGsL~v~n~~~~ 591 (603)
T COG4191 575 IARDLGGSLEVANHPEG 591 (603)
T ss_pred HHHHhCCeEEeecCCCC
Confidence 24468899999865443
No 62
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=97.03 E-value=0.0013 Score=78.35 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=64.0
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc--
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF-- 184 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGl-- 184 (643)
.+...++.+||+||+.+. ....|.|.+.. .+....|.|.|||.||+++.+.++|...+..+.. .|-.|+|+
T Consensus 560 ~~l~qil~NLl~NAik~~--~~g~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i 632 (914)
T PRK11466 560 RRIRQVITNLLSNALRFT--DEGSIVLRSRT--DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK---RGGTGLGLTI 632 (914)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCeEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHHhchhhcCCCC---CCCCcccHHH
Confidence 345578999999999983 24457776654 2345679999999999999999999855533221 13345554
Q ss_pred -cccccccCCEEEEEeeeCC
Q 006503 185 -KTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~~~ 203 (643)
+...-.+|+.+.|.|...+
T Consensus 633 ~~~l~~~~gG~i~v~s~~~~ 652 (914)
T PRK11466 633 SSRLAQAMGGELSATSTPEV 652 (914)
T ss_pred HHHHHHHcCCEEEEEecCCC
Confidence 3345678999999998643
No 63
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.02 E-value=0.0012 Score=79.68 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=64.2
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccC-CCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc---
Q 006503 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMK-DNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF--- 184 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~-~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGl--- 184 (643)
.-.++.+||.||+.+.. ...|.|.+..... ++...|.|.|+|.||+++.+.++|...++.+.....-+--|+||
T Consensus 566 L~QVL~NLL~NAik~t~--~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~ 643 (894)
T PRK10618 566 LRKILLLLLNYAITTTA--YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFLC 643 (894)
T ss_pred HHHHHHHHHHHHHHhCC--CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHHH
Confidence 44689999999999843 2346666654221 23467999999999999999999985555443222112246675
Q ss_pred cccccccCCEEEEEeeeCCC
Q 006503 185 KTSTMRLGADVIVFSRATHE 204 (643)
Q Consensus 185 KsAs~~lg~~v~V~Sr~~~~ 204 (643)
|...-.+|+.+.|.|...+|
T Consensus 644 k~Lve~~GG~I~v~S~~g~G 663 (894)
T PRK10618 644 NQLCRKLGGHLTIKSREGLG 663 (894)
T ss_pred HHHHHHcCCEEEEEECCCCc
Confidence 33455789999999987543
No 64
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.99 E-value=0.0017 Score=77.84 Aligned_cols=91 Identities=16% Similarity=0.110 Sum_probs=64.4
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCC-CeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc--
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNS-PALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF-- 184 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~-~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGl-- 184 (643)
+...++.+||+||+.+. ....|.|.+... ++. ..|.|.|+|.||+++++.++|...++.+ .....|-.|+|+
T Consensus 579 ~l~~il~nLi~NAik~~--~~g~i~i~~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~~~~~g~GLGL~i 653 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFT--DRGSVVLRVSLN--DDSSLLFEVEDTGCGIAEEEQATLFDAFTQAD-GRRRSGGTGLGLAI 653 (968)
T ss_pred HHHHHHHHHHHHHHhhC--CCCeEEEEEEEc--CCCeEEEEEEeCCCCCCHHHHHHHHhhhhccC-CCCCCCCccHHHHH
Confidence 45578999999999983 234577777653 233 6899999999999999999997444333 222234456666
Q ss_pred -cccccccCCEEEEEeeeCC
Q 006503 185 -KTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~~~ 203 (643)
|...-.+|+++.|.|...+
T Consensus 654 ~~~l~~~~gG~i~~~s~~~~ 673 (968)
T TIGR02956 654 SQRLVEAMDGELGVESELGV 673 (968)
T ss_pred HHHHHHHcCCEEEEEecCCC
Confidence 3345678999999988643
No 65
>PRK10547 chemotaxis protein CheA; Provisional
Probab=96.98 E-value=0.0016 Score=76.22 Aligned_cols=90 Identities=19% Similarity=0.336 Sum_probs=63.2
Q ss_pred HHHHHhccchhhhhC-----------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH-------------------
Q 006503 112 AIAELLDNAVDEVQN-----------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR------------------- 161 (643)
Q Consensus 112 AIaELIDNAiDA~~~-----------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~------------------- 161 (643)
.|.+||.||+|+-.. ....|.|.... .++...|.|.|||.||+++.+.
T Consensus 389 pL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~--~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~ 466 (670)
T PRK10547 389 PLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH--QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEV 466 (670)
T ss_pred HHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE--cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHH
Confidence 356899999997311 12346676654 3456679999999999998764
Q ss_pred --HhhhcccccccCCCCcccccccc---cccccccCCEEEEEeeeCC
Q 006503 162 --KCMSLGYSTKKANKTIGQYGNGF---KTSTMRLGADVIVFSRATH 203 (643)
Q Consensus 162 --~~~~~G~S~K~~~~~IG~fGiGl---KsAs~~lg~~v~V~Sr~~~ 203 (643)
.+|..|+|++...+...-.|+|| |.....+++.+.|.|+...
T Consensus 467 ~~lIF~pgfst~~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~ 513 (670)
T PRK10547 467 GMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGK 513 (670)
T ss_pred HHHhhcCCcccccccccCCCCchhHHHHHHHHHHcCCEEEEEecCCC
Confidence 35667888876434444458887 4556689999999998643
No 66
>PRK10337 sensor protein QseC; Provisional
Probab=96.94 E-value=0.0012 Score=71.70 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=59.9
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc--
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK-- 185 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlK-- 185 (643)
....++.+||+||+.+... ...|.|.+.. ..|+|.|||.||+++++.++|...+..+. ...+-+|+|+.
T Consensus 352 ~l~~vl~Nli~NA~k~~~~-~~~i~i~~~~------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~--~~~~g~GlGL~iv 422 (449)
T PRK10337 352 LLSLLVRNLLDNAIRYSPQ-GSVVDVTLNA------RNFTVRDNGPGVTPEALARIGERFYRPPG--QEATGSGLGLSIV 422 (449)
T ss_pred HHHHHHHHHHHHHHhhCCC-CCeEEEEEEe------eEEEEEECCCCCCHHHHHHhcccccCCCC--CCCCccchHHHHH
Confidence 4456889999999998321 2346665543 26999999999999999999985554321 12233677753
Q ss_pred -ccccccCCEEEEEeeeC
Q 006503 186 -TSTMRLGADVIVFSRAT 202 (643)
Q Consensus 186 -sAs~~lg~~v~V~Sr~~ 202 (643)
.....+|+++.+.+...
T Consensus 423 ~~i~~~~gg~l~~~s~~~ 440 (449)
T PRK10337 423 RRIAKLHGMNVSFGNAPE 440 (449)
T ss_pred HHHHHHcCCEEEEEecCC
Confidence 44567899999988764
No 67
>PRK09835 sensor kinase CusS; Provisional
Probab=96.90 E-value=0.0017 Score=70.88 Aligned_cols=91 Identities=24% Similarity=0.268 Sum_probs=62.8
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC-CCCcccccccc--
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGF-- 184 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~-~~~IG~fGiGl-- 184 (643)
+...++.+||+||+.+.. ....|.|.+... ++...|.|.|||.||+++++.+++...++.... ...-+-+|+|+
T Consensus 375 ~l~~vl~nll~Na~~~~~-~~~~I~i~~~~~--~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i 451 (482)
T PRK09835 375 MLRRAISNLLSNALRYTP-AGEAITVRCQEV--DHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAI 451 (482)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCeEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHH
Confidence 456789999999999732 133577777652 345689999999999999999998754433221 11112346665
Q ss_pred -cccccccCCEEEEEeee
Q 006503 185 -KTSTMRLGADVIVFSRA 201 (643)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~ 201 (643)
+.....+|+++.+.|..
T Consensus 452 ~~~i~~~~~g~i~~~s~~ 469 (482)
T PRK09835 452 VKSIVVAHKGTVAVTSDA 469 (482)
T ss_pred HHHHHHHCCCEEEEEECC
Confidence 44566789999998864
No 68
>PRK13557 histidine kinase; Provisional
Probab=96.88 E-value=0.0021 Score=70.82 Aligned_cols=90 Identities=26% Similarity=0.315 Sum_probs=61.4
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEc-------------cCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCC
Q 006503 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNI-------------MKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANK 175 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gAt~V~I~i~~~-------------~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~ 175 (643)
.-.++.+|+.||+++... ...|.|..... ..++...|.|.|||.||+++...++|...++.+...
T Consensus 278 l~~vl~nll~NA~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~~- 355 (540)
T PRK13557 278 AEVALLNVLINARDAMPE-GGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEEG- 355 (540)
T ss_pred HHHHHHHHHHHHHHhccc-CCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCCC-
Confidence 446899999999998533 23355544321 012334799999999999999999998777665421
Q ss_pred Ccccccccc---cccccccCCEEEEEeeeC
Q 006503 176 TIGQYGNGF---KTSTMRLGADVIVFSRAT 202 (643)
Q Consensus 176 ~IG~fGiGl---KsAs~~lg~~v~V~Sr~~ 202 (643)
+-.|+|| |.....+|+.+.|.|...
T Consensus 356 --~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 356 --KGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred --CCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 2234554 445667999999998864
No 69
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=96.79 E-value=0.0029 Score=77.93 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=61.8
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccC-CCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc-
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMK-DNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK- 185 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~-~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlK- 185 (643)
....++.+||+||+++...+...|.+....... .....|.|.|||.||+++++.++|...++.+... ..+-.|+|+.
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~-~~~G~GLGL~i 906 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR-QQTGSGLGLMI 906 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccCC-CCCCcCchHHH
Confidence 456799999999999854333233332221111 1224588999999999999999998555444321 1223577763
Q ss_pred --ccccccCCEEEEEeeeCC
Q 006503 186 --TSTMRLGADVIVFSRATH 203 (643)
Q Consensus 186 --sAs~~lg~~v~V~Sr~~~ 203 (643)
...-.+|+.+.|.|...+
T Consensus 907 ~~~iv~~~gG~i~v~s~~~~ 926 (1197)
T PRK09959 907 CKELIKNMQGDLSLESHPGI 926 (1197)
T ss_pred HHHHHHHcCCEEEEEeCCCC
Confidence 345678999999998643
No 70
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=96.66 E-value=0.0038 Score=75.67 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=63.5
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCccccccccc-
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGFK- 185 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~-~~~~IG~fGiGlK- 185 (643)
..-.+|.+||+||+.+.. ...|.|.+.. .++...|.|.|+|.||+++++.++|...+..+. .....+-.|+||.
T Consensus 562 ~L~qvl~NLl~NAik~t~--~G~I~I~v~~--~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I 637 (924)
T PRK10841 562 RLQQVISNLLSNAIKFTD--TGCIVLHVRV--DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAI 637 (924)
T ss_pred HHHHHHHHHHHHHHhhCC--CCcEEEEEEE--eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHH
Confidence 345789999999999842 3346666654 234567999999999999999999984443222 1122233577764
Q ss_pred --ccccccCCEEEEEeeeCC
Q 006503 186 --TSTMRLGADVIVFSRATH 203 (643)
Q Consensus 186 --sAs~~lg~~v~V~Sr~~~ 203 (643)
...-.+|+.+.|.|....
T Consensus 638 ~k~lv~~~gG~I~v~S~~g~ 657 (924)
T PRK10841 638 CEKLINMMDGDISVDSEPGM 657 (924)
T ss_pred HHHHHHHCCCEEEEEEcCCC
Confidence 335568999999998643
No 71
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=96.48 E-value=0.0063 Score=71.74 Aligned_cols=92 Identities=16% Similarity=0.243 Sum_probs=63.0
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cccccccCCCCcccccccc--
Q 006503 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKANKTIGQYGNGF-- 184 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~-~G~S~K~~~~~IG~fGiGl-- 184 (643)
..-.+|.+|||||....- ..+.|.|.... ......+.|.|+|.||++++++++|. |-+-.|.+. .-| -|+|+
T Consensus 775 LieQVLiNLleNA~Kyap-~~s~I~I~~~~--~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~-~~G-~GLGLsI 849 (890)
T COG2205 775 LIEQVLINLLENALKYAP-PGSEIRINAGV--ERENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA-TRG-VGLGLAI 849 (890)
T ss_pred HHHHHHHHHHHHHHhhCC-CCCeEEEEEEE--ecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC-CCC-ccccHHH
Confidence 345689999999998721 24457777665 34677899999999999999999997 544444322 111 13343
Q ss_pred -cccccccCCEEEEEeeeCCC
Q 006503 185 -KTSTMRLGADVIVFSRATHE 204 (643)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~~~~ 204 (643)
+...-..|+.+.+.++..+|
T Consensus 850 c~~iv~ahgG~I~a~~~~~gG 870 (890)
T COG2205 850 CRGIVEAHGGTISAENNPGGG 870 (890)
T ss_pred HHHHHHHcCCeEEEEEcCCCc
Confidence 23345689999999966543
No 72
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=96.44 E-value=0.0042 Score=70.67 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=56.7
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccc
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKs 186 (643)
.+.+.++.|+|.||+.+. .++.|.|.+.. .++...|.|.|||.||+++.. ...++|.++ ++.
T Consensus 468 ~~l~~il~ell~NA~kha--~a~~i~V~~~~--~~~~~~l~V~D~G~Gi~~~~~------------~~~glGL~i--~~~ 529 (569)
T PRK10600 468 IHLLQIAREALSNALKHA--QASEVVVTVAQ--NQNQVKLSVQDNGCGVPENAE------------RSNHYGLII--MRD 529 (569)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCeEEEEEEE--cCCEEEEEEEECCCCCCcccc------------CCCCccHHH--HHH
Confidence 356789999999999872 46678887765 245568999999999997531 123344444 345
Q ss_pred cccccCCEEEEEeeeCC
Q 006503 187 STMRLGADVIVFSRATH 203 (643)
Q Consensus 187 As~~lg~~v~V~Sr~~~ 203 (643)
..-++|+++.|.|...+
T Consensus 530 ~~~~lgG~l~i~s~~~~ 546 (569)
T PRK10600 530 RAQSLRGDCRVRRRESG 546 (569)
T ss_pred HHHHcCCEEEEEECCCC
Confidence 56679999999998754
No 73
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=96.36 E-value=0.0095 Score=54.96 Aligned_cols=84 Identities=24% Similarity=0.283 Sum_probs=53.3
Q ss_pred HHHHHHhccchhhh-h-CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 006503 111 GAIAELLDNAVDEV-Q-NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (643)
Q Consensus 111 ~AIaELIDNAiDA~-~-~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsAs 188 (643)
.++.||+.||+.+. . .....|.|.+... ++...|.|.|+|.||+. +.+++...++.+.. .+..|+|+.. .
T Consensus 42 ~~l~eli~Nai~h~~~~~~~~~I~v~~~~~--~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~~---~~~~GlGL~l-v 113 (137)
T TIGR01925 42 TAVSEAVTNAIIHGYEENCEGVVYISATIE--DHEVYITVRDEGIGIEN--LEEAREPLYTSKPE---LERSGMGFTV-M 113 (137)
T ss_pred HHHHHHHHHHHHhccCCCCCcEEEEEEEEe--CCEEEEEEEEcCCCcCc--hhHhhCCCcccCCC---CCCCcccHHH-H
Confidence 58999999999751 1 1134577777652 34567999999999983 55666544443321 2235666643 3
Q ss_pred cccCCEEEEEeeeC
Q 006503 189 MRLGADVIVFSRAT 202 (643)
Q Consensus 189 ~~lg~~v~V~Sr~~ 202 (643)
-+++.++.+.+...
T Consensus 114 ~~~~~~l~~~~~~~ 127 (137)
T TIGR01925 114 ENFMDDVSVDSEKE 127 (137)
T ss_pred HHhCCcEEEEECCC
Confidence 34667888877653
No 74
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.14 E-value=0.006 Score=76.07 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=62.9
Q ss_pred HHHHHHHhccchhhhh-----CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHH--------hhh-cccccccC--
Q 006503 110 FGAIAELLDNAVDEVQ-----NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRK--------CMS-LGYSTKKA-- 173 (643)
Q Consensus 110 f~AIaELIDNAiDA~~-----~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~--------~~~-~G~S~K~~-- 173 (643)
...+-|+||||+|... ..++.|.|.|.. ....|+|.|||.||+-+.-.. +|. +-.+.|.+
T Consensus 59 ~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~----d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~ 134 (1388)
T PTZ00108 59 YKIFDEILVNAADNKARDKGGHRMTYIKVTIDE----ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDT 134 (1388)
T ss_pred hhhHHHHhhhhhhhhcccCCCCCccEEEEEEec----cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCC
Confidence 3578999999999765 237888888864 235899999999998643211 222 23344442
Q ss_pred --CCCcccccccccccccccCCEEEEEeeeC
Q 006503 174 --NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (643)
Q Consensus 174 --~~~IG~fGiGlKsAs~~lg~~v~V~Sr~~ 202 (643)
...-|+.|+|.| .+-.+...+.|.+...
T Consensus 135 ~yKvSGGlhGVGas-vvNalS~~f~Vev~r~ 164 (1388)
T PTZ00108 135 EKRVTGGRNGFGAK-LTNIFSTKFTVECVDS 164 (1388)
T ss_pred ceeeecccccCCcc-ccccccceEEEEEEEC
Confidence 346899999987 4556899999999986
No 75
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.09 E-value=0.012 Score=69.65 Aligned_cols=91 Identities=29% Similarity=0.457 Sum_probs=65.3
Q ss_pred HHHHhccchhhh--------hCC---CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH-Hhh----------------
Q 006503 113 IAELLDNAVDEV--------QNG---ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR-KCM---------------- 164 (643)
Q Consensus 113 IaELIDNAiDA~--------~~g---At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~-~~~---------------- 164 (643)
|--||-||+|.- ++| ...|.+.-. ..++...|.|.|||.||+++.+. +++
T Consensus 437 L~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~--~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~ 514 (716)
T COG0643 437 LTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAY--HEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDE 514 (716)
T ss_pred HHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEE--cCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHH
Confidence 577999999963 112 223555444 35678889999999999988764 343
Q ss_pred -------hcccccccCCCCcccccccc---cccccccCCEEEEEeeeCCCC
Q 006503 165 -------SLGYSTKKANKTIGQYGNGF---KTSTMRLGADVIVFSRATHES 205 (643)
Q Consensus 165 -------~~G~S~K~~~~~IG~fGiGl---KsAs~~lg~~v~V~Sr~~~~~ 205 (643)
..|+|++...+.+.=-|+|| |+..-+||+.+.|.|+...|.
T Consensus 515 Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT 565 (716)
T COG0643 515 EILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGT 565 (716)
T ss_pred HHHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCe
Confidence 34777776555554458996 888999999999999986543
No 76
>PLN03128 DNA topoisomerase 2; Provisional
Probab=95.98 E-value=0.0089 Score=73.62 Aligned_cols=89 Identities=21% Similarity=0.221 Sum_probs=61.8
Q ss_pred cHHHHHHHHhccchhhh-hC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--------Hhhh-cccccccC---
Q 006503 108 WAFGAIAELLDNAVDEV-QN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA--- 173 (643)
Q Consensus 108 ~~f~AIaELIDNAiDA~-~~-gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~--------~~~~-~G~S~K~~--- 173 (643)
-....+-|+||||+|.. .+ .++.|.|.+.. ....|+|.|||.||+-+--. -+|+ +-.+.|.+
T Consensus 52 GL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~----~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ 127 (1135)
T PLN03128 52 GLYKIFDEILVNAADNKQRDPSMDSLKVDIDV----EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNE 127 (1135)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc----CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCcc
Confidence 33457899999999976 32 37888888864 23589999999999865221 1222 22334442
Q ss_pred -CCCcccccccccccccccCCEEEEEeee
Q 006503 174 -NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (643)
Q Consensus 174 -~~~IG~fGiGlKsAs~~lg~~v~V~Sr~ 201 (643)
...-|+.|+|.| .+-.+...+.|.+..
T Consensus 128 ykvSGGlhGvGas-vvNaLS~~f~Vev~d 155 (1135)
T PLN03128 128 KKTTGGRNGYGAK-LANIFSTEFTVETAD 155 (1135)
T ss_pred ceeeccccCCCCe-EEEeecCeEEEEEEE
Confidence 246799999986 455688999999983
No 77
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=95.88 E-value=0.021 Score=62.27 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=65.4
Q ss_pred HHHHHHHhccchhhhhC-------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc----C---CC
Q 006503 110 FGAIAELLDNAVDEVQN-------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK----A---NK 175 (643)
Q Consensus 110 f~AIaELIDNAiDA~~~-------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~----~---~~ 175 (643)
.-++-||..||+.|... +-.-|.|.+..+ +....|.|.|-|+|++++++.+.|++++|+-. + ..
T Consensus 262 ~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~g--deDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~ 339 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKG--DEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTA 339 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecC--CcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcC
Confidence 45899999999999742 133477777763 45678999999999999999999999999855 1 12
Q ss_pred Cccccccccccc---ccccCCEEEEEeee
Q 006503 176 TIGQYGNGFKTS---TMRLGADVIVFSRA 201 (643)
Q Consensus 176 ~IG~fGiGlKsA---s~~lg~~v~V~Sr~ 201 (643)
.+-=||.|+..+ .-.+|+++.+.|-.
T Consensus 340 plaGfG~GLPisrlYa~yf~Gdl~L~Sle 368 (414)
T KOG0787|consen 340 PLAGFGFGLPISRLYARYFGGDLKLQSLE 368 (414)
T ss_pred cccccccCCcHHHHHHHHhCCCeeEEeee
Confidence 334456665432 33467788888775
No 78
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=95.86 E-value=0.0066 Score=70.46 Aligned_cols=83 Identities=22% Similarity=0.196 Sum_probs=57.1
Q ss_pred HHHHHhccchhhhhC---C-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHH-----------hhh-cccccccC--
Q 006503 112 AIAELLDNAVDEVQN---G-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRK-----------CMS-LGYSTKKA-- 173 (643)
Q Consensus 112 AIaELIDNAiDA~~~---g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~-----------~~~-~G~S~K~~-- 173 (643)
.+-|+||||+|...+ + ++.|.|.+. ...|+|.|||.||+-+.-.. +|. +-.+.|.+
T Consensus 49 i~~EIldNavDe~~~~~~g~~~~I~V~i~------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ 122 (602)
T PHA02569 49 IIDEIIDNSVDEAIRTNFKFANKIDVTIK------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDT 122 (602)
T ss_pred eeehhhhhhhhhhhccCCCCCcEEEEEEc------CCEEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCc
Confidence 567999999997654 3 888888875 23799999999998643211 122 22223331
Q ss_pred -CCCcccccccccccccccCCEEEEEeee
Q 006503 174 -NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (643)
Q Consensus 174 -~~~IG~fGiGlKsAs~~lg~~v~V~Sr~ 201 (643)
...-|+.|+|.+ +.-.|...+.|.++.
T Consensus 123 ykvSGGlhGVG~s-vvNaLS~~~~V~v~~ 150 (602)
T PHA02569 123 NRVTGGMNGVGSS-LTNFFSVLFIGETCD 150 (602)
T ss_pred ceeeCCcCCccce-eeeccchhhheEEEc
Confidence 235799999986 455688888888754
No 79
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=95.71 E-value=0.014 Score=65.89 Aligned_cols=72 Identities=28% Similarity=0.432 Sum_probs=50.9
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 006503 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsAs 188 (643)
.+.++.|+++||+.+. ++..|.|++.. .++...|.|.|||.||++++ ...++|..+ .+...
T Consensus 411 L~ril~nlL~NAiKha--~~~~I~I~l~~--~~~~i~l~V~DnG~Gi~~~~-------------~~~GLGL~i--vr~iv 471 (495)
T PRK11644 411 LFRVCQEGLNNIVKHA--DASAVTLQGWQ--QDERLMLVIEDDGSGLPPGS-------------GQQGFGLRG--MRERV 471 (495)
T ss_pred HHHHHHHHHHHHHHhC--CCCEEEEEEEE--cCCEEEEEEEECCCCCCcCC-------------CCCCCcHHH--HHHHH
Confidence 4467899999999973 45677887765 23456899999999998652 112334333 34445
Q ss_pred cccCCEEEEEe
Q 006503 189 MRLGADVIVFS 199 (643)
Q Consensus 189 ~~lg~~v~V~S 199 (643)
-.+|+++.+.|
T Consensus 472 ~~~GG~i~v~S 482 (495)
T PRK11644 472 TALGGTLTISC 482 (495)
T ss_pred HHcCCEEEEEc
Confidence 67999999988
No 80
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.69 E-value=0.015 Score=62.68 Aligned_cols=77 Identities=29% Similarity=0.382 Sum_probs=59.1
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccc
Q 006503 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (643)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKs 186 (643)
...|-++.|.|-|++-. ++|+.|.|.+... ++...|.|.|||.|.+.+... .++|.- ||+.
T Consensus 278 ~~l~rivQEaltN~~rH--a~A~~v~V~l~~~--~~~l~l~V~DnG~Gf~~~~~~-------------~~~GL~--~mre 338 (365)
T COG4585 278 DALFRIVQEALTNAIRH--AQATEVRVTLERT--DDELRLEVIDNGVGFDPDKEG-------------GGFGLL--GMRE 338 (365)
T ss_pred HHHHHHHHHHHHHHHhc--cCCceEEEEEEEc--CCEEEEEEEECCcCCCccccC-------------CCcchh--hHHH
Confidence 45678999999999987 4699999999874 456899999999999965422 223333 3665
Q ss_pred cccccCCEEEEEeeeC
Q 006503 187 STMRLGADVIVFSRAT 202 (643)
Q Consensus 187 As~~lg~~v~V~Sr~~ 202 (643)
=...+|+.+.|.|...
T Consensus 339 Rv~~lgG~l~i~S~~g 354 (365)
T COG4585 339 RVEALGGTLTIDSAPG 354 (365)
T ss_pred HHHHcCCEEEEEecCC
Confidence 5677999999999983
No 81
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=95.40 E-value=0.025 Score=64.14 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=60.5
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc-ccc
Q 006503 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF-KTS 187 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGl-KsA 187 (643)
....+.|-+-|++.. +.|+.|+|.+..+. |...+.|+|||+|++.. ....|.||+-+ --=
T Consensus 482 lLqIvREAlsNa~KH--a~As~i~V~~~~~~--g~~~~~VeDnG~Gi~~~---------------~e~~gHyGL~IM~ER 542 (574)
T COG3850 482 LLQIVREALSNAIKH--AQASEIKVTVSQND--GQVTLTVEDNGVGIDEA---------------AEPSGHYGLNIMRER 542 (574)
T ss_pred HHHHHHHHHHHHHHh--cccCeEEEEEEecC--CeEEEEEeeCCcCCCCc---------------cCCCCCcchHHHHHH
Confidence 456899999999987 36899999998753 78899999999999964 24457888642 112
Q ss_pred ccccCCEEEEEeeeCCCC
Q 006503 188 TMRLGADVIVFSRATHES 205 (643)
Q Consensus 188 s~~lg~~v~V~Sr~~~~~ 205 (643)
+-+|++.+.|..+..+|.
T Consensus 543 A~~L~~~L~i~~~~~gGT 560 (574)
T COG3850 543 AQRLGGQLRIRRREGGGT 560 (574)
T ss_pred HHHhcCeEEEeecCCCCe
Confidence 457999999999987654
No 82
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.22 E-value=0.02 Score=55.16 Aligned_cols=85 Identities=21% Similarity=0.201 Sum_probs=52.6
Q ss_pred HHHHHHhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 006503 111 GAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsAs 188 (643)
-|+.|++-||+..-..+ ...|.|.+.. .++...|.|.|+|.||+++.+...+...+..+.. .....-|+|+..+
T Consensus 45 lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~--~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~-~~~~~~G~GL~li- 120 (161)
T PRK04069 45 IAVSEACTNAVQHAYKEDEVGEIHIRFEI--YEDRLEIVVADNGVSFDYETLKSKLGPYDISKPI-EDLREGGLGLFLI- 120 (161)
T ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEEEE--ECCEEEEEEEECCcCCChHHhccccCCCCCCCcc-cccCCCceeHHHH-
Confidence 38999999999873221 1346676654 3467889999999999998887776543322211 0011125555432
Q ss_pred cccCCEEEEEe
Q 006503 189 MRLGADVIVFS 199 (643)
Q Consensus 189 ~~lg~~v~V~S 199 (643)
-.+...+.+.+
T Consensus 121 ~~l~d~v~~~~ 131 (161)
T PRK04069 121 ETLMDDVTVYK 131 (161)
T ss_pred HHHHHhEEEEc
Confidence 24666677664
No 83
>PRK03660 anti-sigma F factor; Provisional
Probab=95.20 E-value=0.054 Score=50.36 Aligned_cols=84 Identities=21% Similarity=0.276 Sum_probs=52.3
Q ss_pred HHHHHHhccchhhhhCC-C-ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 006503 111 GAIAELLDNAVDEVQNG-A-TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~g-A-t~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsAs 188 (643)
.++.|++.||+..-... . ..|.|.+.. .++...|+|.|+|.||++ +...+...++.+... +.-|+|+..+
T Consensus 42 ~~l~eli~Nai~h~~~~~~~~~i~i~~~~--~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~~---~~~GlGL~i~- 113 (146)
T PRK03660 42 TAVSEAVTNAIIHGYENNPDGVVYIEVEI--EEEELEITVRDEGKGIED--IEEAMQPLYTTKPEL---ERSGMGFTVM- 113 (146)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEEEE--CCCEEEEEEEEccCCCCh--HHHhhCCCcccCCCC---CCccccHHHH-
Confidence 48999999999652111 1 356776654 234567999999999986 445555444433211 2347777543
Q ss_pred cccCCEEEEEeeeC
Q 006503 189 MRLGADVIVFSRAT 202 (643)
Q Consensus 189 ~~lg~~v~V~Sr~~ 202 (643)
.+++..+.+.+...
T Consensus 114 ~~~~~~i~~~~~~~ 127 (146)
T PRK03660 114 ESFMDEVEVESEPG 127 (146)
T ss_pred HHhCCeEEEEecCC
Confidence 35777888776653
No 84
>PRK13560 hypothetical protein; Provisional
Probab=95.06 E-value=0.021 Score=66.18 Aligned_cols=76 Identities=28% Similarity=0.290 Sum_probs=50.3
Q ss_pred HHHHHhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccccc
Q 006503 112 AIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTM 189 (643)
Q Consensus 112 AIaELIDNAiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsAs~ 189 (643)
+|.+||.||+++...+ ...|.|.+... .++...|+|.|||.||+++.. + ....++|.+- .|...-
T Consensus 715 il~NLl~NAik~~~~~~~~~~i~i~~~~~-~~~~v~i~V~D~G~GI~~~~~-----~-----~~~~gLGLai--~~~iv~ 781 (807)
T PRK13560 715 IISELLSNALKHAFPDGAAGNIKVEIREQ-GDGMVNLCVADDGIGLPAGFD-----F-----RAAETLGLQL--VCALVK 781 (807)
T ss_pred HHHHHHHHHHHhhccCCCCceEEEEEEEc-CCCEEEEEEEeCCCcCCcccc-----c-----cccCCccHHH--HHHHHH
Confidence 6789999999974221 34577766542 134568999999999998631 1 1112344443 245567
Q ss_pred ccCCEEEEEee
Q 006503 190 RLGADVIVFSR 200 (643)
Q Consensus 190 ~lg~~v~V~Sr 200 (643)
.+|+.+.|.|.
T Consensus 782 ~~gG~I~v~S~ 792 (807)
T PRK13560 782 QLDGEIALDSR 792 (807)
T ss_pred HcCCEEEEEcC
Confidence 89999999985
No 85
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=94.51 E-value=0.035 Score=53.58 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=53.8
Q ss_pred HHHHHHhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 006503 111 GAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsAs 188 (643)
-|+.|++-||+.....+ ...|.|.+... ++...|.|.|+|.||+++.+...+........ ......-|.|+.. .
T Consensus 45 lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~-~~~~~~~G~GL~L-i 120 (159)
T TIGR01924 45 IAVSEACTNAVKHAYKEGENGEIGISFHIY--EDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEP-IDDLREGGLGLFL-I 120 (159)
T ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEEEEe--CCEEEEEEEEcccccCchhhccccCCCCCCCC-cccCCCCccCHHH-H
Confidence 38999999999973211 24677777653 45678999999999999887765542221111 1111123666643 2
Q ss_pred cccCCEEEEEe
Q 006503 189 MRLGADVIVFS 199 (643)
Q Consensus 189 ~~lg~~v~V~S 199 (643)
-++...+.+.+
T Consensus 121 ~~L~D~v~~~~ 131 (159)
T TIGR01924 121 ETLMDEVEVYE 131 (159)
T ss_pred HHhccEEEEEe
Confidence 46778888875
No 86
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=94.06 E-value=0.066 Score=61.70 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=59.7
Q ss_pred HHHHHHHhccchhhhhCC-CceE---EEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc
Q 006503 110 FGAIAELLDNAVDEVQNG-ATFV---KVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (643)
Q Consensus 110 f~AIaELIDNAiDA~~~g-At~V---~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlK 185 (643)
-.|+.+||.||.+|+... +... .|.+..+..++..++.|.|||.|.+.+...+++..--+++...+++|.-- .|
T Consensus 602 ~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~KGTGLGLAi--VK 679 (712)
T COG5000 602 GQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREKGTGLGLAI--VK 679 (712)
T ss_pred HHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecccccccccHHH--HH
Confidence 368999999999998421 1111 24444444667888999999999999999999985544444333333222 24
Q ss_pred ccccccCCEEEEEeee
Q 006503 186 TSTMRLGADVIVFSRA 201 (643)
Q Consensus 186 sAs~~lg~~v~V~Sr~ 201 (643)
...--.|+.+.+.-++
T Consensus 680 kIvEeHGG~leL~da~ 695 (712)
T COG5000 680 KIVEEHGGRLELHNAP 695 (712)
T ss_pred HHHHhcCCeEEecCCC
Confidence 5556677777776664
No 87
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=93.82 E-value=0.077 Score=56.93 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=55.9
Q ss_pred HHHHHHhccchhhhhCCC---ceEEEEE------EEcc--CCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccc
Q 006503 111 GAIAELLDNAVDEVQNGA---TFVKVDR------VNIM--KDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQ 179 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~gA---t~V~I~i------~~~~--~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~ 179 (643)
.|+-+||.||..|..+.+ ..|.+.- .... ..-...|.|.|||.|++++-....|..--|.|.+.+
T Consensus 244 Qv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~Gs---- 319 (363)
T COG3852 244 QVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREGGT---- 319 (363)
T ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCCCc----
Confidence 699999999999964211 2222221 1100 011345889999999999999999987777776544
Q ss_pred cccccccc---ccccCCEEEEEeee
Q 006503 180 YGNGFKTS---TMRLGADVIVFSRA 201 (643)
Q Consensus 180 fGiGlKsA---s~~lg~~v~V~Sr~ 201 (643)
|+|+..| .-..++.++..|+.
T Consensus 320 -GLGLala~~li~qH~G~Ie~~S~P 343 (363)
T COG3852 320 -GLGLALAQNLIDQHGGKIEFDSWP 343 (363)
T ss_pred -cccHHHHHHHHHhcCCEEEEeccC
Confidence 4444322 33467788888887
No 88
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.79 E-value=0.086 Score=47.72 Aligned_cols=78 Identities=26% Similarity=0.248 Sum_probs=51.3
Q ss_pred HHHHHHhccchhhhhCCC--ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 006503 111 GAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~gA--t~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsAs 188 (643)
-|+.|++-||+.+...+. ..|.|.+.. ..+...|.|.|+|.|+++.........+. .....-|.|+.. .
T Consensus 34 lav~E~~~Nav~H~~~~~~~~~v~v~~~~--~~~~l~i~v~D~G~~~d~~~~~~~~~~~~------~~~~~~G~Gl~l-i 104 (125)
T PF13581_consen 34 LAVSEALTNAVEHGYPGDPDGPVDVRLEV--DPDRLRISVRDNGPGFDPEQLPQPDPWEP------DSLREGGRGLFL-I 104 (125)
T ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEEEE--cCCEEEEEEEECCCCCChhhccCcccccC------CCCCCCCcCHHH-H
Confidence 489999999999843222 356666655 34568899999999999987655433221 122233555532 3
Q ss_pred cccCCEEEE
Q 006503 189 MRLGADVIV 197 (643)
Q Consensus 189 ~~lg~~v~V 197 (643)
-+++..+.+
T Consensus 105 ~~l~D~~~~ 113 (125)
T PF13581_consen 105 RSLMDEVDY 113 (125)
T ss_pred HHHHcEEEE
Confidence 458888888
No 89
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=93.64 E-value=0.13 Score=57.72 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=51.1
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc---c
Q 006503 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF---K 185 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGl---K 185 (643)
....+.||+.||+.+. .+..|.|.+... .++...|.|.|||+||+++.. ... |+|+ +
T Consensus 472 l~qv~~nll~NA~k~~--~~~~i~i~~~~~-~~~~~~i~V~D~G~Gi~~~~~------------~~~-----glGL~i~~ 531 (565)
T PRK10935 472 LLQIIREATLNAIKHA--NASEIAVSCVTN-PDGEHTVSIRDDGIGIGELKE------------PEG-----HYGLNIMQ 531 (565)
T ss_pred HHHHHHHHHHHHHhcC--CCCeEEEEEEEc-CCCEEEEEEEECCcCcCCCCC------------CCC-----CcCHHHHH
Confidence 4467899999999862 345677776542 134567999999999996321 111 3343 4
Q ss_pred ccccccCCEEEEEeeeCC
Q 006503 186 TSTMRLGADVIVFSRATH 203 (643)
Q Consensus 186 sAs~~lg~~v~V~Sr~~~ 203 (643)
...-.+|+.+.|.|...+
T Consensus 532 ~iv~~~~G~i~v~s~~~~ 549 (565)
T PRK10935 532 ERAERLGGTLTISQPPGG 549 (565)
T ss_pred HHHHHcCCEEEEEECCCC
Confidence 445678999999988754
No 90
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=93.53 E-value=0.13 Score=57.61 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=50.8
Q ss_pred HHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc
Q 006503 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK 172 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~ 172 (643)
..+-+|+-||+||+...|..|.|....+ ..+..+|.|.|||.|-+.+-+.+.+.+-+++|.
T Consensus 567 QVlvNl~~NaldA~~h~~p~i~~~~~~~-~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~ 627 (673)
T COG4192 567 QVLVNLIVNALDASTHFAPWIKLIALGT-EQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE 627 (673)
T ss_pred HHHHHHHHHHHhhhccCCceEEEEeecC-cccceEEEEecCCCCCchhHHHHhcCCcccccc
Confidence 4778999999999887787777777652 456788999999999999999999997777674
No 91
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=92.90 E-value=0.096 Score=58.65 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=52.2
Q ss_pred HHHHHHhccchhhhh-CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccccc
Q 006503 111 GAIAELLDNAVDEVQ-NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTM 189 (643)
Q Consensus 111 ~AIaELIDNAiDA~~-~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsAs~ 189 (643)
-.|.=|||||+.|-. .......|.+.....++...+.|.|||.||++........-|..+ .|+|+...-.
T Consensus 353 l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~~~~~~r---------~giGL~Nv~~ 423 (456)
T COG2972 353 LVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLSTKGENR---------SGIGLSNVKE 423 (456)
T ss_pred HHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHHhhccCc---------ccccHHHHHH
Confidence 378899999999842 112333444443333567789999999999998888776533322 4666643322
Q ss_pred ----ccCC-EEEEEeeeCC
Q 006503 190 ----RLGA-DVIVFSRATH 203 (643)
Q Consensus 190 ----~lg~-~v~V~Sr~~~ 203 (643)
.-|. .+.+.|+..+
T Consensus 424 rl~~~~g~~~~~i~s~~~~ 442 (456)
T COG2972 424 RLKLYFGEPGLSIDSQPGK 442 (456)
T ss_pred HHHHeeCCcceeEeecCCC
Confidence 2334 3566666543
No 92
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=92.30 E-value=0.25 Score=57.35 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=60.3
Q ss_pred HHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh---ccccc-ccCCCCcccccccccc
Q 006503 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS---LGYST-KKANKTIGQYGNGFKT 186 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~---~G~S~-K~~~~~IG~fGiGlKs 186 (643)
....+||.||+..-...++.|.|.... .+...++.|.|||.|+++.-+.++|. -++|. ++...++|.+- .|.
T Consensus 639 qv~~NLi~Naik~~~~e~~~i~I~~~r--~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~~y~gtG~GL~I--~kk 714 (750)
T COG4251 639 QVFQNLIANAIKFGGPENPDIEISAER--QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEYLGTGLGLAI--CKK 714 (750)
T ss_pred HHHHHHHhhheecCCCCCCceEEeeec--cCCceEEEecCCCCCcCHHHHHHHHHHHHhcCchhhhcCCCccHHH--HHH
Confidence 456899999998744445667777543 45678999999999999999999875 23332 22333333332 234
Q ss_pred cccccCCEEEEEeeeC
Q 006503 187 STMRLGADVIVFSRAT 202 (643)
Q Consensus 187 As~~lg~~v~V~Sr~~ 202 (643)
..-+.++.+.|.|+..
T Consensus 715 I~e~H~G~i~vEs~~g 730 (750)
T COG4251 715 IAERHQGRIWVESTPG 730 (750)
T ss_pred HHHHhCceEEEeecCC
Confidence 5667788999999964
No 93
>PRK13559 hypothetical protein; Provisional
Probab=91.63 E-value=0.37 Score=50.99 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=49.6
Q ss_pred HHHHHHHhccchhhh--hCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccc
Q 006503 110 FGAIAELLDNAVDEV--QNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (643)
Q Consensus 110 f~AIaELIDNAiDA~--~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsA 187 (643)
..++.|||.||+.+- ......|.|.+.....++...|.+.|||+||+++ ....++|.+. ++..
T Consensus 269 ~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~-------------~~~~g~Gl~i--~~~~ 333 (361)
T PRK13559 269 GLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK-------------LAKRGFGTVI--IGAM 333 (361)
T ss_pred HHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC-------------CCCCCcHHHH--HHHH
Confidence 458899999999972 1123467777632333556789999999998754 1223344443 2333
Q ss_pred ccc-cCCEEEEEeee
Q 006503 188 TMR-LGADVIVFSRA 201 (643)
Q Consensus 188 s~~-lg~~v~V~Sr~ 201 (643)
... +|+.+.+.+..
T Consensus 334 v~~~~gG~i~~~~~~ 348 (361)
T PRK13559 334 VESQLNGQLEKTWSD 348 (361)
T ss_pred HHHHcCCeEEEEEcC
Confidence 444 99999998864
No 94
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.31 E-value=0.47 Score=51.91 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=59.4
Q ss_pred HHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cccccccCCCCccccccccc---c
Q 006503 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKANKTIGQYGNGFK---T 186 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~-~G~S~K~~~~~IG~fGiGlK---s 186 (643)
..|-++|.||+..- -+..+|.|.+.. .+....|+|.|.|.||+.+++.++|. |-+-+|...+..|=-|+|+. .
T Consensus 345 QVldNii~NA~KYs-P~Gg~Itv~~~~--~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIake 421 (459)
T COG5002 345 QVLDNIISNALKYS-PDGGRITVSVKQ--RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKE 421 (459)
T ss_pred HHHHHHHHHHhhcC-CCCCeEEEEEee--eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHH
Confidence 57788888988762 124456666654 34567899999999999999999997 54444443344555566653 3
Q ss_pred cccccCCEEEEEeee
Q 006503 187 STMRLGADVIVFSRA 201 (643)
Q Consensus 187 As~~lg~~v~V~Sr~ 201 (643)
..-..|+.+-..|..
T Consensus 422 iV~~hgG~iWA~s~~ 436 (459)
T COG5002 422 IVQAHGGRIWAESEE 436 (459)
T ss_pred HHHHhCCeEEEeccc
Confidence 345567776666663
No 95
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=90.25 E-value=0.62 Score=51.20 Aligned_cols=97 Identities=22% Similarity=0.251 Sum_probs=66.4
Q ss_pred cCcccccccccccccccccccccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh
Q 006503 86 QGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS 165 (643)
Q Consensus 86 ~~~l~~~~~~~~fL~sn~Tsh~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~ 165 (643)
.++-.++..+++=.+-+.|.---.|-..-|++.|-... +.|+.|.|.+.. .+....++|.|||.|+++..
T Consensus 388 rgihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KH--A~AS~V~i~l~~--~~e~l~Lei~DdG~Gl~~~~------ 457 (497)
T COG3851 388 RGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKH--ADASAVTIQLWQ--QDERLMLEIEDDGSGLPPGS------ 457 (497)
T ss_pred cCeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhc--cccceEEEEEee--CCcEEEEEEecCCcCCCCCC------
Confidence 34444555555556666666667788899999999876 368889888876 23457899999999998321
Q ss_pred cccccccCCCCcccccccccccccccCCEEEEEeee
Q 006503 166 LGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (643)
Q Consensus 166 ~G~S~K~~~~~IG~fGiGlKsAs~~lg~~v~V~Sr~ 201 (643)
+..+.|.-|+ .--...+|+++++.|.+
T Consensus 458 -------~v~G~Gl~Gm--rERVsaLGG~ltlssq~ 484 (497)
T COG3851 458 -------GVQGFGLTGM--RERVSALGGTLTLSSQH 484 (497)
T ss_pred -------CccCcCcchH--HHHHHHhCCceEEEecc
Confidence 2334444443 22344589999998854
No 96
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=89.47 E-value=0.43 Score=45.90 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=52.7
Q ss_pred HHHHHHhccchhhhhCCC---ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc--CCCCccccccccc
Q 006503 111 GAIAELLDNAVDEVQNGA---TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK--ANKTIGQYGNGFK 185 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~gA---t~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~--~~~~IG~fGiGlK 185 (643)
.|+.|++.|++.+.-.+. ..|.|.+.. .++...++|.|-|. +.+++...+..++.... ...+.|.|+
T Consensus 43 ~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~--~~~~~~i~i~D~G~--~~~~~~~~~~~~~~~~~~~~~~G~Gl~l---- 114 (146)
T COG2172 43 IAVSEALTNAVKHAYKLDPSEGEIRIEVSL--DDGKLEIRIWDQGP--GIEDLEESLGPGDTTAEGLQEGGLGLFL---- 114 (146)
T ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEEEEE--cCCeEEEEEEeCCC--CCCCHHHhcCCCCCCCcccccccccHHH----
Confidence 499999999999742211 456666665 34668999999994 44567777777754443 233455554
Q ss_pred ccccccCCEEEEEeee
Q 006503 186 TSTMRLGADVIVFSRA 201 (643)
Q Consensus 186 sAs~~lg~~v~V~Sr~ 201 (643)
..++..++.+....
T Consensus 115 --~~~~~D~~~~~~~~ 128 (146)
T COG2172 115 --AKRLMDEFSYERSE 128 (146)
T ss_pred --HhhhheeEEEEecc
Confidence 23467777777554
No 97
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=84.01 E-value=1.3 Score=45.26 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=33.3
Q ss_pred HHHHHhccchhhhhC--CCceEEEEEEEccCCCCCeEEEEECCCCCCH
Q 006503 112 AIAELLDNAVDEVQN--GATFVKVDRVNIMKDNSPALVFIDDGGGMDP 157 (643)
Q Consensus 112 AIaELIDNAiDA~~~--gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~ 157 (643)
++-||+-||+.+... ....|.|.+.....++...++|.|||.|++.
T Consensus 126 iv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~ 173 (221)
T COG3920 126 IVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPV 173 (221)
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCC
Confidence 679999999997322 2456777777632211368999999999984
No 98
>PF14501 HATPase_c_5: GHKL domain
Probab=83.33 E-value=2.2 Score=37.64 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHHHHHhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCC
Q 006503 111 GAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGG 154 (643)
Q Consensus 111 ~AIaELIDNAiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~G 154 (643)
..++.|+|||++|+... .+.|.|.+.. .++...|.|......
T Consensus 8 ~il~nlldNAiea~~~~~~~~~I~i~~~~--~~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 8 RILGNLLDNAIEACKKYEDKRFISISIRE--ENGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEEe--cCCEEEEEEEECCCC
Confidence 47999999999997532 5567777765 346666777766544
No 99
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.03 E-value=10 Score=37.39 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 006503 582 SADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQKTME 642 (643)
Q Consensus 582 ~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~~ 642 (643)
....+..||.+|-..-.+..++-++|..++..|++++..++.+|.-|..-++..|+-..++
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~~~ 158 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAVVE 158 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456778999998888899999999999999999999999999999999999888765554
No 100
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=76.81 E-value=4.6 Score=44.18 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=50.8
Q ss_pred HHHHHHhccchhhhh--CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 006503 111 GAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (643)
Q Consensus 111 ~AIaELIDNAiDA~~--~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l~~~~~~G~S~K~~~~~IG~fGiGlKsAs 188 (643)
.|+--.+.-|+.-+. ++|++|.|.+.. .++...+.|.|||.|.+......-+ .+||.--+ .--.
T Consensus 358 talyRv~QEaltNIErHa~Atrv~ill~~--~~d~vql~vrDnG~GF~~~~~~~~~----------~GiGLRNM--rERm 423 (459)
T COG4564 358 TALYRVVQEALTNIERHAGATRVTILLQQ--MGDMVQLMVRDNGVGFSVKEALQKR----------HGIGLRNM--RERM 423 (459)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEecc--CCcceEEEEecCCCCccchhhccCc----------cccccccH--HHHH
Confidence 355555555554432 478988887764 4567889999999999876654322 23333322 1123
Q ss_pred cccCCEEEEEeeeCC
Q 006503 189 MRLGADVIVFSRATH 203 (643)
Q Consensus 189 ~~lg~~v~V~Sr~~~ 203 (643)
..+|+.+.|.|...|
T Consensus 424 a~~GG~~~v~s~p~G 438 (459)
T COG4564 424 AHFGGELEVESSPQG 438 (459)
T ss_pred HHhCceEEEEecCCC
Confidence 357999999999874
No 101
>PRK14141 heat shock protein GrpE; Provisional
Probab=72.17 E-value=4.5 Score=41.44 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=34.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 599 EHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 599 e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
+|+..+..|++++..|+.|+++.+.++.|+.|+.++-||.
T Consensus 28 ~~~~~~~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR 67 (209)
T PRK14141 28 PYEMEDDPEPDPLEALKAENAELKDRMLRLAAEMENLRKR 67 (209)
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566668899999999999999999999999999987754
No 102
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=71.96 E-value=3.2 Score=47.24 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=32.7
Q ss_pred HHHHHhccchhhhhC---CCceEEEEEEEccCCCCCeEEEEECCCCCCHH
Q 006503 112 AIAELLDNAVDEVQN---GATFVKVDRVNIMKDNSPALVFIDDGGGMDPE 158 (643)
Q Consensus 112 AIaELIDNAiDA~~~---gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~~ 158 (643)
.|-=||+||+..-.. +.-.|.|.+.. .+....|.|+|||.|++++
T Consensus 460 ilQPLVENAIKHG~~~~~~~g~V~I~V~~--~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 460 ILQPLVENAIKHGISQLKDTGRVTISVEK--EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhhHHHHHHHHhcccchhcCCceEEEEEE--eCCeEEEEEecCCCCcCCC
Confidence 577899999986311 12346666665 3456899999999999987
No 103
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=69.36 E-value=18 Score=30.30 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 006503 585 QICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKL 623 (643)
Q Consensus 585 ~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~ 623 (643)
++-..|+.+=.+=-|-++|-.+|.+.|..|++|+++.+.
T Consensus 22 kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 22 KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445567777777777788888888888888888887764
No 104
>PRK14143 heat shock protein GrpE; Provisional
Probab=69.20 E-value=7.9 Score=40.44 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006503 604 ETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQKT 640 (643)
Q Consensus 604 ~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~~ 640 (643)
..+|+.++..|+.|+++.+.+|-||.|+.++-||...
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777888999999999999999999998776543
No 105
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=68.14 E-value=10 Score=40.54 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 592 QLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 592 ~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
.|-..|++.++|-.+|+.++.+||+|+...| ||+.|+.++|+
T Consensus 252 ~l~ge~~~Le~rN~~LK~qa~~lerEI~ylK----qli~e~~~~r~ 293 (294)
T KOG4571|consen 252 ALLGELEGLEKRNEELKDQASELEREIRYLK----QLILEVYKKRV 293 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcc
Confidence 4667899999999999999999999998876 68888887775
No 106
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.99 E-value=20 Score=40.95 Aligned_cols=53 Identities=28% Similarity=0.324 Sum_probs=38.6
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 006503 581 ISADQICEENIQLFIKCEEHLQRETEINQLIE--------LLEKEVTQAKLKCAKLSAYVE 633 (643)
Q Consensus 581 ~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~--------~l~~el~~~~~~~~~l~~~l~ 633 (643)
....+|..+|.+|...-+..++|++.+++.|. +|++|.++++.+..+|...|+
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~ 133 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLID 133 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999988888774 344555566666555544443
No 107
>PRK14148 heat shock protein GrpE; Provisional
Probab=66.87 E-value=13 Score=37.84 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 602 QRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 602 ~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
+.-++|++++..|+.|+++.+.++.|+.|+.++-||.
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR 76 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKR 76 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346688899999999999999999999999988754
No 108
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=66.62 E-value=27 Score=29.81 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 584 DQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAY 631 (643)
Q Consensus 584 ~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~ 631 (643)
+.|-|-|..+..||++...-..+......-|+..++|||....+|..|
T Consensus 20 ealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 20 EALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567788899999999999999999999999999999999888877643
No 109
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=66.12 E-value=18 Score=43.64 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=33.4
Q ss_pred HHHHHHHHhccchhhhhCCCc--eEEEEEEEccCCCCCeEEEEECCCCCCHHHH
Q 006503 109 AFGAIAELLDNAVDEVQNGAT--FVKVDRVNIMKDNSPALVFIDDGGGMDPESL 160 (643)
Q Consensus 109 ~f~AIaELIDNAiDA~~~gAt--~V~I~i~~~~~~~~~~I~I~DNG~GMs~~~l 160 (643)
.+...-|+++||.| ...++. .|.+.+.. ....|.|.+||.||+-+..
T Consensus 54 l~ki~dEilvNaad-k~rd~~m~~i~v~i~~----e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 54 LYKIFDEILVNAAD-KQRDPKMNTIKVTIDK----EKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHHhhcccc-cccCCCcceeEEEEcc----CCCEEEEEeCCCcceeeec
Confidence 34578999999999 554544 34444432 4568999999999986543
No 110
>PRK14147 heat shock protein GrpE; Provisional
Probab=65.84 E-value=11 Score=37.55 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
.+|+.++..|+.|+++.+.++.|+.|+.++-|+..
T Consensus 21 ~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~ 55 (172)
T PRK14147 21 DPLKAEVESLRSEIALVKADALRERADLENQRKRI 55 (172)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666788899999999999999999999887643
No 111
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=63.84 E-value=28 Score=28.58 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 585 QICEENIQLFIKCEEHLQR-ETEINQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 585 ~~~~en~~l~~~c~e~~~~-~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
.-++-|-.--.+|=+-++. -.+|+.+|..|+.|..+.+.+++.|..+++.-+.
T Consensus 8 ~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 8 RRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666677655443 3567777777777777777777777776665443
No 112
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=63.31 E-value=17 Score=42.18 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=43.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 581 ISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 581 ~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
...+++.+|+..|...+...++.-++|+..|.+|+.+|+..+.+|.+|..+.+.
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke 196 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKE 196 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888888888888899999999988888888775443
No 113
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.28 E-value=11 Score=36.66 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=37.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 582 SADQICEENIQLFIKCEEHLQRETEINQLI---------ELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 582 ~~~~~~~en~~l~~~c~e~~~~~~el~~~~---------~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
+...+-.+..+|-.+|.+.++....|.-.+ .+|..++++.+.+|+.|.+.|+.-+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566677777777666666555443 45667778888888888888877664
No 114
>PRK14156 heat shock protein GrpE; Provisional
Probab=62.05 E-value=15 Score=36.72 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 601 LQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 601 ~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
...++.++.++..|+.|+++.+.++.|+.|+.++-||.
T Consensus 26 ~~~~~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR 63 (177)
T PRK14156 26 VVEETPEKSELELANERADEFENKYLRAHAEMQNIQRR 63 (177)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999987754
No 115
>PRK14139 heat shock protein GrpE; Provisional
Probab=61.26 E-value=16 Score=36.91 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
..|+.++..|+.|+++.+.+|-|+.|+.++-||..
T Consensus 35 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~ 69 (185)
T PRK14139 35 PALEAELAEAEAKAAELQDSFLRAKAETENVRRRA 69 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788899999999999999999999877543
No 116
>PRK14153 heat shock protein GrpE; Provisional
Probab=61.02 E-value=16 Score=37.06 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 604 ETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 604 ~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
-++++++|..|+.++++.+.+|.|+.|+.++-|+..
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~ 70 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRT 70 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999887543
No 117
>PRK14154 heat shock protein GrpE; Provisional
Probab=60.97 E-value=16 Score=37.49 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 606 EINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 606 el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
+|+.++..|+.|+++.+.++.||.|+.++-||.
T Consensus 56 ~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR 88 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKR 88 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888889999999999999988887753
No 118
>PRK14140 heat shock protein GrpE; Provisional
Probab=60.94 E-value=17 Score=36.90 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 606 EINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 606 el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
+|++++..|+.|+.+.+.++.|+.|+.++-|+.
T Consensus 41 ~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR 73 (191)
T PRK14140 41 EEQAKIAELEAKLDELEERYLRLQADFENYKRR 73 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888999999999999999999999987754
No 119
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=60.35 E-value=36 Score=40.04 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 583 ADQICEENIQLFIKCEEHLQRET----------EINQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 583 ~~~~~~en~~l~~~c~e~~~~~~----------el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
.+++-.|+-+|-.+|++++.+.. +++-+|..|+++|+|.+++.++|...|..-|+
T Consensus 445 ~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 445 LEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666654321 25566777777777777777777776655553
No 120
>PRK14151 heat shock protein GrpE; Provisional
Probab=59.70 E-value=17 Score=36.28 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 604 ETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 604 ~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
...|+.++..|+.|+++.+.++-|+.|+.++-||.
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR 56 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRR 56 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999999999999987754
No 121
>PRK14163 heat shock protein GrpE; Provisional
Probab=59.44 E-value=17 Score=37.41 Aligned_cols=35 Identities=6% Similarity=0.167 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
.+|++++..|+.|+++.+.+|-||.|+.++-||..
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~ 77 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRV 77 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788899999999999999999988877543
No 122
>PRK14144 heat shock protein GrpE; Provisional
Probab=58.46 E-value=20 Score=36.64 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
++|+.++..|+.|+++.+.+|-|+.|+.++-|+..
T Consensus 48 ~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~ 82 (199)
T PRK14144 48 TALEEQLTLAEQKAHENWEKSVRALAELENVRRRM 82 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999999999887543
No 123
>PRK14158 heat shock protein GrpE; Provisional
Probab=58.29 E-value=22 Score=36.19 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
.+|+..+..|+.|+++.+.++.|+.|+.++-|+..
T Consensus 43 ~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~ 77 (194)
T PRK14158 43 KELEEALAAKEAEAAANWDKYLRERADLENYRKRV 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778889999999999999999988877543
No 124
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.80 E-value=36 Score=40.93 Aligned_cols=64 Identities=22% Similarity=0.276 Sum_probs=52.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006503 577 HPVTISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQKT 640 (643)
Q Consensus 577 ~~~~~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~~ 640 (643)
..--.+...+-+||-+|-.|+-+..+....=+|.+..||+.|.+-++.-+.|-++|.+-||+..
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~ 519 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARK 519 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445567889999999999999999998899999999999999888887777777776665543
No 125
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=57.59 E-value=60 Score=28.48 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Q 006503 582 SADQICEENIQLFIKCEEHLQRET-------EINQLIELLEKEVTQAKLKC----AKLSAYVEARKK 637 (643)
Q Consensus 582 ~~~~~~~en~~l~~~c~e~~~~~~-------el~~~~~~l~~el~~~~~~~----~~l~~~l~~~~~ 637 (643)
+.+.+++|--.+-+.|.+|+.+=+ .+.++|.+||..=...|.+| ++|..+|++|..
T Consensus 12 Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~~ 78 (79)
T PF08581_consen 12 EFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRGR 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 456788888888889999998744 46677888887777666655 578888887754
No 126
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=57.38 E-value=81 Score=27.13 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=44.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 582 SADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 582 ~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
-+..||+|=-+|-.+=+.+...=..|.+++.++++++.+++.+.+.+.++++.-+
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888888888888888777655
No 127
>PRK14160 heat shock protein GrpE; Provisional
Probab=56.60 E-value=29 Score=35.77 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=34.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 599 EHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 599 e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
...+.-..|++++..|+.|+++.+.++.|+.|+.++-|+..
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667889999999999999999999999999877543
No 128
>smart00338 BRLZ basic region leucin zipper.
Probab=55.63 E-value=87 Score=25.67 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 585 QICEENIQLFIKCEEH-LQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 585 ~~~~en~~l~~~c~e~-~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
.=+..|-.--.+|=+- +..-.+|+.+|..|+.|.++.+.+++.|..++..-+.+
T Consensus 8 rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 8 RRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777766 34457888999999999999999999999988877754
No 129
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=55.28 E-value=43 Score=35.51 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=52.2
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 576 GHPVTISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 576 ~~~~~~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
++-.+..-+..--.|+.+.--..--++++.|+.++|..||+|.+..+.+..+|-.||..-|.
T Consensus 189 ~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 189 EKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred hcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666677888887788888999999999999999999999999999999988774
No 130
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.04 E-value=51 Score=33.76 Aligned_cols=42 Identities=7% Similarity=0.073 Sum_probs=26.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006503 599 EHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQKT 640 (643)
Q Consensus 599 e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~~ 640 (643)
+-.+...+|+..-.+|++||++++.|-+.|-++++..++...
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666667777777777777777777776665443
No 131
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=54.71 E-value=33 Score=35.94 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=33.9
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 581 ISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKL 628 (643)
Q Consensus 581 ~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l 628 (643)
..+..|.|||-.|...|+-.+...+-|=.+--+|..|||+.+.+.+.|
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 356789999999999999888777666666666666666555554443
No 132
>PRK14162 heat shock protein GrpE; Provisional
Probab=54.56 E-value=26 Score=35.67 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
.+|+.++..|+.++++.+.++.|+.|+.++-|+.
T Consensus 42 ~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR 75 (194)
T PRK14162 42 EDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNR 75 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667788888888888888888888877653
No 133
>PRK14161 heat shock protein GrpE; Provisional
Probab=53.87 E-value=23 Score=35.50 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 607 INQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 607 l~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
+...+..|+.|+++.+.++.|+.|+.++-|+..
T Consensus 24 ~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~ 56 (178)
T PRK14161 24 ANPEITALKAEIEELKDKLIRTTAEIDNTRKRL 56 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444678899999999999999999999877543
No 134
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=53.51 E-value=70 Score=27.67 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 583 ADQICEENIQLFIKCEEHLQRE---------------TEINQLIELLEKEVTQAKLKCAKLSA 630 (643)
Q Consensus 583 ~~~~~~en~~l~~~c~e~~~~~---------------~el~~~~~~l~~el~~~~~~~~~l~~ 630 (643)
..+|.-||-.|=.|+--.+.+- .||+..+..|++||.+.++...++..
T Consensus 9 i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 9 IDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777766666664433332 25555555555555555555544443
No 135
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=52.26 E-value=1e+02 Score=27.08 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 585 QICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSA 630 (643)
Q Consensus 585 ~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~ 630 (643)
.|+++|+.|-.+-.+-+..=..|+.-|+.||.+|.-+-.--.+|-+
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~ 47 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQD 47 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999988887777778899999999999765544444444
No 136
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.48 E-value=25 Score=29.36 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
.++++.+.+|++++++.+.+-++|..+++.-
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777777777665
No 137
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.84 E-value=78 Score=32.79 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 603 RETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 603 ~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
|-..|+..+.++++++++.+.+++.+...|+.++
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555554
No 138
>PRK14145 heat shock protein GrpE; Provisional
Probab=48.53 E-value=37 Score=34.57 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 603 RETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 603 ~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
...+|+.++..|+.++.+.+.++-|+.|+.++-|+.
T Consensus 46 e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR 81 (196)
T PRK14145 46 EIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKR 81 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677778888888888899999999988887754
No 139
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=48.15 E-value=63 Score=37.85 Aligned_cols=48 Identities=29% Similarity=0.282 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 587 CEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 587 ~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
+.|=.+|-.|..|..-.-.|+++||++|+++|.+.|.+..+|--++++
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 445555666666666666778888888888888888888888776654
No 140
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=45.79 E-value=38 Score=34.65 Aligned_cols=33 Identities=30% Similarity=0.266 Sum_probs=28.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 598 EEHLQRETEINQLIELLEKEVTQAKLKCAKLSA 630 (643)
Q Consensus 598 ~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~ 630 (643)
-+++.+|-|-..+|-+||+||++++++..+|.-
T Consensus 162 ~~~k~~emE~Qv~IL~lE~~L~~ar~~L~~lRk 194 (200)
T smart00307 162 HEGKTQEMEQQVEILKLENELEAARKKLAEIRK 194 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888899999999999999988864
No 141
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=44.38 E-value=1.8e+02 Score=23.84 Aligned_cols=38 Identities=26% Similarity=0.190 Sum_probs=29.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 596 KCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVE 633 (643)
Q Consensus 596 ~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~ 633 (643)
..++.+.+-.+|......|..++...+.+|..|..+++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555667778888888888888888888888887763
No 142
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=44.24 E-value=41 Score=24.68 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 006503 593 LFIKCEEHLQRETEINQLIELLE 615 (643)
Q Consensus 593 l~~~c~e~~~~~~el~~~~~~l~ 615 (643)
|-+--+..++|.++|++++.+|+
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555544
No 143
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=43.93 E-value=52 Score=28.49 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=36.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006503 577 HPVTISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQ 620 (643)
Q Consensus 577 ~~~~~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~ 620 (643)
+..+.....+..||+.|-..++..++.=.+++..+.++++.+++
T Consensus 32 ~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e~ 75 (75)
T PF07989_consen 32 KLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIEE 75 (75)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34556788999999999999999888888888888888887763
No 144
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=43.86 E-value=1.2e+02 Score=30.49 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 006503 465 VRLESKLKQMTL 476 (643)
Q Consensus 465 ~~l~~~L~e~l~ 476 (643)
..|..+|..+|.
T Consensus 36 i~L~e~Ld~~L~ 47 (189)
T PF10211_consen 36 IQLQEWLDKMLQ 47 (189)
T ss_pred HHHHHHHHHHHH
Confidence 334555555554
No 145
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=43.60 E-value=60 Score=25.85 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 589 ENIQLFIKCEEHLQ-RETEINQLIELLEKEVTQAKLKCAKLSA 630 (643)
Q Consensus 589 en~~l~~~c~e~~~-~~~el~~~~~~l~~el~~~~~~~~~l~~ 630 (643)
-|-.--.+|-+-++ ...+|++.|..|+.|..+.+.+++.|-.
T Consensus 11 rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 11 RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455544433 3345566666666666666555555543
No 146
>PRK14149 heat shock protein GrpE; Provisional
Probab=43.51 E-value=39 Score=34.34 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 608 NQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 608 ~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
+..+..|+.|+++.+.+|.|+.|+.++-||.
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~rKR 72 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVKKR 72 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999987754
No 147
>PRK14157 heat shock protein GrpE; Provisional
Probab=43.19 E-value=40 Score=35.12 Aligned_cols=33 Identities=9% Similarity=-0.055 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 607 INQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 607 l~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
|...+..|+.|+++.+.++-||.|+.++-||..
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~ 114 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRT 114 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888889999999999999888877543
No 148
>PRK14146 heat shock protein GrpE; Provisional
Probab=43.00 E-value=47 Score=34.28 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 604 ETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 604 ~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
...|+..+..|+.|+++.+.+|-||.|+.++-|+..
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~ 91 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRS 91 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788999999999999999999999887543
No 149
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.92 E-value=1.2e+02 Score=31.48 Aligned_cols=13 Identities=46% Similarity=0.371 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 006503 587 CEENIQLFIKCEE 599 (643)
Q Consensus 587 ~~en~~l~~~c~e 599 (643)
.++|-.|..++++
T Consensus 33 ~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 33 KEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444433
No 150
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.63 E-value=1.1e+02 Score=30.40 Aligned_cols=60 Identities=25% Similarity=0.192 Sum_probs=37.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 579 VTISADQICEENIQLFIKCEEHLQRETEI--------NQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 579 ~~~~~~~~~~en~~l~~~c~e~~~~~~el--------~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
.-.-...+..+..++.+++++.++..++. +.+...++.|+++.|+|.+..-+++++-|+|
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677888888888888877754432 2333455566666666666666666665544
No 151
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=42.43 E-value=46 Score=33.66 Aligned_cols=33 Identities=27% Similarity=0.214 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 607 INQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 607 l~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
+.++|..|+.++++.+.++-|+.|++++-|+..
T Consensus 41 ~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~ 73 (193)
T COG0576 41 EQQEIAELEAQLEELKDKYLRAQAEFENLRKRT 73 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448899999999999999999999999887653
No 152
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=41.80 E-value=51 Score=32.34 Aligned_cols=35 Identities=31% Similarity=0.306 Sum_probs=26.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 596 KCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSA 630 (643)
Q Consensus 596 ~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~ 630 (643)
..-+.+..|-|-..+|-+||+||++++.+.++|.-
T Consensus 112 s~~~~k~~eMe~Qv~iL~lE~eLe~ar~kL~~lRk 146 (152)
T PF01608_consen 112 SLHQAKRQEMEAQVRILKLEKELEKARKKLAELRK 146 (152)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777788899999999999999988864
No 153
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.40 E-value=68 Score=30.78 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 603 RETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 603 ~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
...||+-.-.+|..||+..+.+.+++.-||++.|
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777778888888888888888888888877
No 154
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=40.94 E-value=1.1e+02 Score=32.50 Aligned_cols=53 Identities=21% Similarity=0.144 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 583 ADQICEENIQLFIKCEEHLQRETEINQLI--------------ELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 583 ~~~~~~en~~l~~~c~e~~~~~~el~~~~--------------~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
...|-.+|-|+++.|+..+|.--||+|.- ..++..|.+|-.+-|=|-+||..|
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEk 159 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEK 159 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45688899999999999999888888742 334455666666666666666554
No 155
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=40.54 E-value=74 Score=26.31 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 610 LIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 610 ~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
||.+|.+++.+...|.+||..++.+-|
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666665544
No 156
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.60 E-value=1.1e+02 Score=31.89 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=30.6
Q ss_pred HHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 597 CEEHLQRETEI---NQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 597 c~e~~~~~~el---~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
-+|.++++++| +-++..|++..++...||+||+.+-+..+.|
T Consensus 164 ~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 164 ETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34444444444 4678889999999999999999876666554
No 157
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.60 E-value=1.3e+02 Score=28.63 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=33.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 581 ISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 581 ~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
...+.++.+|..|-.+=++.+.+=.+++..+..+-.++.+.+.+|..+..+++.
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888877776666666666666666666666666666666665544
No 158
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.53 E-value=1.1e+02 Score=36.13 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=52.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 006503 580 TISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQKTM 641 (643)
Q Consensus 580 ~~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~ 641 (643)
.++..+|-++=-.|..+|++.+..-..|...+.+++.|+++.+.++.+|..++..+++...|
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l 388 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVEL 388 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777778899999999999999999999999999999999999999988876544
No 159
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=38.42 E-value=95 Score=41.07 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=48.8
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 581 ISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 581 ~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
-+..-|.+||..++-+|.||+++=..|+..+..|+.+|.+.+.+..-..|++.--+
T Consensus 1229 EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~ 1284 (1822)
T KOG4674|consen 1229 ESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLE 1284 (1822)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888999999999999999999999999999999999999998888776433
No 160
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=37.90 E-value=83 Score=27.76 Aligned_cols=36 Identities=31% Similarity=0.330 Sum_probs=30.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 598 EEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVE 633 (643)
Q Consensus 598 ~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~ 633 (643)
++..+.-.+|..++..|-..++++|.+|++|.+|=+
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~ 54 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENE 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778889999999999999999999998644
No 161
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=37.38 E-value=1.6e+02 Score=29.75 Aligned_cols=53 Identities=25% Similarity=0.155 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 583 ADQICEENIQLFIKCEEHLQRET-----EINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 583 ~~~~~~en~~l~~~c~e~~~~~~-----el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
..+..+.++.=.++|.|.+=.+. +++.+|.+||.+|.+.+.+++.+..+-++.
T Consensus 100 ~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~ 157 (190)
T PF05266_consen 100 SLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAK 157 (190)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777666655 778888888888888888776666544433
No 162
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=37.38 E-value=90 Score=28.01 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 608 NQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 608 ~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
+-+|.+|+.++.....++.+|-+.|++-|.++
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888877654
No 163
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.92 E-value=68 Score=29.35 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
.++++.+.+++.|+++.+.+-++|..+++..+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555555555555555444
No 164
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.64 E-value=1.7e+02 Score=30.02 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=19.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 600 HLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 600 ~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
+.++..||.+++.++++++.+.+.+.++|..+|+.
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555543
No 165
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.49 E-value=1.2e+02 Score=33.34 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=41.5
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 581 ISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 581 ~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
++.+.|.+|-.+|......|++|-+|+......--+.+.--|++...|.+.|+.-++
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~ 60 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKK 60 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466788889999999998999888888877666666666666666666665555543
No 166
>PRK14159 heat shock protein GrpE; Provisional
Probab=36.03 E-value=59 Score=32.56 Aligned_cols=32 Identities=25% Similarity=0.175 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 608 NQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 608 ~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
+..+..|+.|+++.+.++.||.|+.++-||..
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~ 60 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRM 60 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999998877543
No 167
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=35.90 E-value=1.1e+02 Score=28.33 Aligned_cols=43 Identities=19% Similarity=0.438 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 585 QICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVE 633 (643)
Q Consensus 585 ~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~ 633 (643)
.|+|==++.-.-|-+ .|...+..|+.+++++..++++|...++
T Consensus 62 rLaQl~ieYLl~~q~------~L~~~~~~l~~~~~~~~~~~~~l~~~~~ 104 (118)
T PF13815_consen 62 RLAQLSIEYLLHCQE------YLSSQLEQLEERLQELQQEIEKLKQKLK 104 (118)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433 3444444455555554444444444433
No 168
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.70 E-value=1.9e+02 Score=29.10 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006503 616 KEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 616 ~el~~~~~~~~~l~~~l~~ 634 (643)
.+|++.+.++++|.++|+.
T Consensus 110 ~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 110 EELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666677777776663
No 169
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=35.57 E-value=2.6e+02 Score=25.05 Aligned_cols=55 Identities=16% Similarity=0.039 Sum_probs=42.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 582 SADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 582 ~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
+...+.++-.++...-..-...-+-|++++..|+.|+..+..||--++-..++..
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~ 58 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALD 58 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4455666666677776777777889999999999999999999988877555443
No 170
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=34.90 E-value=1.3e+02 Score=30.37 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 593 LFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 593 l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
|-....++.....+|+..+..|+.+|.+++.|...|.+-...-+
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777888888888888888888888887655544
No 171
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=34.72 E-value=33 Score=34.29 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=17.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 580 TISADQICEENIQLFIKCEEHLQRETEIN--------------QLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 580 ~~~~~~~~~en~~l~~~c~e~~~~~~el~--------------~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
.....++.+|.-.++-.|.+..++=.++. ..|..|+.|+...+.+|.+|..+|..+.+
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777766655544444 44555556666666666666666665554
No 172
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=34.71 E-value=2.5e+02 Score=23.92 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006503 592 QLFIKCEEHLQRETEINQLIELLEKEVT 619 (643)
Q Consensus 592 ~l~~~c~e~~~~~~el~~~~~~l~~el~ 619 (643)
+|-.+|++.+..-..|.+.+..++.|=.
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~ 38 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERA 38 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666655555555555555444433
No 173
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.64 E-value=1.9e+02 Score=26.71 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 590 NIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 590 n~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
...||.+-.+.++.-.+|-..|..|+..+.++-.|=++|.-|.++-|.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999998888888888777664
No 174
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=33.87 E-value=2e+02 Score=29.74 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 586 ICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 586 ~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
|.+.-+..=.|.+.-+++-..|...|..|+.+|...|.+|..+..+|+.
T Consensus 181 L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 181 LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555556666666677777777777777777777653
No 175
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.57 E-value=1.2e+02 Score=29.54 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=29.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 580 TISADQICEENIQLFIKCEEHLQ---------RETEINQLIELLEKEVTQAKLKCAKLSA 630 (643)
Q Consensus 580 ~~~~~~~~~en~~l~~~c~e~~~---------~~~el~~~~~~l~~el~~~~~~~~~l~~ 630 (643)
+.+..+|.+|...|-..|-..+. ...||...|.+|+.|+++...+.+.|.+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666555433 2345566666666666666666655543
No 176
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=33.34 E-value=1.1e+02 Score=24.33 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 607 INQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 607 l~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
-++.+..|+.++.+...++++|..++..-++
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567788899999999999999888776554
No 177
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=33.06 E-value=1.1e+02 Score=35.53 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 609 QLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 609 ~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
..+..|+.|+++++.++.+++.+|...|++
T Consensus 346 ~~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 346 ESLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999998865
No 178
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.00 E-value=1.5e+02 Score=25.43 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006503 585 QICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLK 624 (643)
Q Consensus 585 ~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~ 624 (643)
++..-.++|.+...+.++.-.+|+.++..++.+++..+..
T Consensus 30 ~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 30 KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555443
No 179
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=32.56 E-value=6.5e+02 Score=31.44 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=39.5
Q ss_pred HHHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 589 ENIQL--FIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 589 en~~l--~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
+|++. .++|+.|+.+=.+|+-...+-+.+.+|++.+|.||..|+...+
T Consensus 350 ~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~ 399 (980)
T KOG0980|consen 350 ENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLL 399 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544 4679999999999988888888999999999999998877665
No 180
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=32.35 E-value=80 Score=29.07 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=28.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 600 HLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 600 ~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
+.+|.+.|+..+..|++.|.+.+.+..++.+.|+.
T Consensus 91 l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 91 LKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566778888889999999999999998888774
No 181
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.34 E-value=1.5e+02 Score=32.78 Aligned_cols=52 Identities=21% Similarity=0.166 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 583 ADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 583 ~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
.-++-|||-+|-++-.+|.+.-.|.+.....|-.||.|+..-...|.+|-++
T Consensus 136 i~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQa 187 (401)
T PF06785_consen 136 IRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQA 187 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678999999999999999988888889999999999999999999888765
No 182
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=31.99 E-value=82 Score=28.48 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 608 NQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 608 ~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
...+..|+..|.++..+-++|+.+|++.|++
T Consensus 79 ~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 79 KKEREQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5567789999999999999999999999874
No 183
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=31.35 E-value=1e+02 Score=31.01 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 584 DQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYV 632 (643)
Q Consensus 584 ~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l 632 (643)
-+=+.|+.+ =|..+.--.||..+++.|++++++.++.|++|-..|
T Consensus 92 R~~~~e~~k----ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l 136 (181)
T KOG3335|consen 92 RQARKERKK----EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKL 136 (181)
T ss_pred Hhhhcchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555 233334446899999999999999999999996433
No 184
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=31.12 E-value=89 Score=29.20 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006503 605 TEINQLIELLEKEVTQAKL 623 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~ 623 (643)
.|++++|..||.||..+|.
T Consensus 3 sQmElrIkdLeselsk~Kt 21 (111)
T PF12001_consen 3 SQMELRIKDLESELSKMKT 21 (111)
T ss_pred hHHHHHHHHHHHHHHHhHh
Confidence 4677888888888887773
No 185
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.12 E-value=1.5e+02 Score=34.20 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 607 INQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 607 l~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
+......++++|++...+.++|.+++++-+.
T Consensus 95 ~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 95 LNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3366677777777777777777777765443
No 186
>PRK14164 heat shock protein GrpE; Provisional
Probab=30.95 E-value=76 Score=32.91 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 609 QLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 609 ~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
..+..|+.||++.+.+|-|+.|+.++-||.
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR 106 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRR 106 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888888888888887754
No 187
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=30.90 E-value=95 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 607 INQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 607 l~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
++|.+..||++|.+++.+-..--++++.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888776665555443
No 188
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.79 E-value=1.9e+02 Score=25.53 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 593 LFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 593 l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
|.|.-+|.+.+-..|.+.+..+++.-++...+..+|-.|..+|
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665554444444444555554444444
No 189
>PRK10869 recombination and repair protein; Provisional
Probab=30.53 E-value=1.3e+02 Score=35.07 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
++.+..+..|+.++++++.++.+++.+|..+|++
T Consensus 337 ~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 337 DDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577889999999999999999999988865
No 190
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.52 E-value=85 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 611 IELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 611 ~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
|++|+..+.-.+.|.+||-||+..|+.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKKA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 455555555555566677777776653
No 191
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=30.45 E-value=2e+02 Score=33.76 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=21.8
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 581 ISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCA 626 (643)
Q Consensus 581 ~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~ 626 (643)
++-.+|+++|.+|-..|+..+++-.+|+......+++.++.+.++.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444444444444444444444333333
No 192
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.38 E-value=1.4e+02 Score=24.66 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
.||+.++..|+..+..+|++..+|+..++.-
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777778888888888888887777776643
No 193
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=30.38 E-value=1.3e+02 Score=27.38 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=42.3
Q ss_pred EEEEEeeeccCC--CccCCceEEEEeCceeccc--ccc----cCCCCccCceEEEEeecC----c----cCCCCCccc--
Q 006503 396 AETTIGFIKEAP--ALSVSGFNVYHKNRLIRPF--WKV----TGDGSLKGNGVVGVLEAN----F----IEPTHDKQD-- 457 (643)
Q Consensus 396 v~itiGf~kea~--~~~~~G~~vY~~nRLI~~~--ekV----g~~~~~~grGVIGVle~n----f----lePthnKQd-- 457 (643)
+.++ ||+..+. .....+.++|-|||.|..- .+. .......++.-+.+|..+ . +.| +|+.
T Consensus 23 ~~i~-G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~vL~i~~p~~~vDVNvhP--~K~eV~ 99 (119)
T PF01119_consen 23 FSIE-GYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFVLFIEIPPSEVDVNVHP--AKREVR 99 (119)
T ss_dssp EEEE-EEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEEEEEE-SGGGEEETSST--TTT-EE
T ss_pred EEEE-EEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEEEEEEcchHHccccccc--cceEEE
Confidence 4455 7775542 2245799999999999742 111 122334455555555542 2 445 4666
Q ss_pred cc-ccHHHHHHHHHHHHHH
Q 006503 458 FE-RSTLFVRLESKLKQMT 475 (643)
Q Consensus 458 Fe-~t~~y~~l~~~L~e~l 475 (643)
|. ...++..+.+.+.+.|
T Consensus 100 f~~e~~i~~~i~~~i~~~L 118 (119)
T PF01119_consen 100 FRDEDEILNLIEEAIREAL 118 (119)
T ss_dssp ETTHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHh
Confidence 44 4677777777777665
No 194
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.31 E-value=2.4e+02 Score=28.42 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 006503 589 ENIQLFIKCEEHLQRETEINQLIELLEKEVTQAK 622 (643)
Q Consensus 589 en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~ 622 (643)
+-.++..+|.++.+.-.+++.++.+|+.+|+.++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666666666666666665
No 195
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=30.17 E-value=1.2e+02 Score=27.43 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 601 LQRETEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 601 ~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
.+|.+.|+..+..|++++.+++.++..+.+.++..
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777777766654
No 196
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.15 E-value=85 Score=33.50 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 582 SADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 582 ~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
...++.+||.+|..+=.++ -.+|+..+++++.|-+||..+|..+.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l----------~~~~~~~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKK----------NQQLEILTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3456778887776543333 22233334446667777777776654
No 197
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.01 E-value=1.5e+02 Score=35.16 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 585 QICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVE 633 (643)
Q Consensus 585 ~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~ 633 (643)
....+=.++-.+-+.++..-.+|+-.+.+|+.|+++.++||+++..++.
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777777778888888888888888888888877554
No 198
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.99 E-value=1.4e+02 Score=27.14 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=28.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 598 EEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 598 ~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
.-+.+|.+.|+..+..|++++...+.++.+|...++.+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777788888888888888888887777653
No 199
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=29.87 E-value=1.6e+02 Score=28.36 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=29.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 597 CEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVE 633 (643)
Q Consensus 597 c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~ 633 (643)
-+|.++...+|.|.|..|..|+.+++.|.+-+..-.+
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999998888888777666665444
No 200
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=29.62 E-value=1.5e+02 Score=23.43 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 006503 605 TEINQLIELLEKEVTQ-------AKLKCAKLSAYVEA 634 (643)
Q Consensus 605 ~el~~~~~~l~~el~~-------~~~~~~~l~~~l~~ 634 (643)
-++++++.+|+-+|++ +..+|+.+...|.+
T Consensus 7 R~IElk~~elrd~LEe~g~~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 7 REIELKCLELRDELEEQGYSEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5677788888888875 44555555555443
No 201
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=29.47 E-value=1.6e+02 Score=28.20 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=29.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 600 HLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 600 ~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
.++.++.|.-.|..||++++-+....++|-+.|=+|=
T Consensus 86 LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKF 122 (131)
T KOG1760|consen 86 LEEKKETLEKEIEELESELESISARMDELKKVLYAKF 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888888888888888888888777663
No 202
>smart00338 BRLZ basic region leucin zipper.
Probab=29.15 E-value=1.9e+02 Score=23.73 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAY 631 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~ 631 (643)
..|......|..++...+.++..|..+
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 203
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.96 E-value=1e+02 Score=30.10 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 006503 621 AKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 621 ~~~~~~~l~~~l~~~~~~ 638 (643)
.++|+++|.+||+..+++
T Consensus 71 l~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666655543
No 204
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=28.84 E-value=2e+02 Score=28.06 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 593 LFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYV 632 (643)
Q Consensus 593 l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l 632 (643)
|-.||+++.+..++|++.+..|-..++++..+-.++....
T Consensus 99 l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 99 LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888888888888888777777777666665544
No 205
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=28.59 E-value=1e+02 Score=30.79 Aligned_cols=57 Identities=25% Similarity=0.243 Sum_probs=43.4
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHhh
Q 006503 576 GHPVTISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLK-C----AKLSAYVEARKKQ 638 (643)
Q Consensus 576 ~~~~~~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~-~----~~l~~~l~~~~~~ 638 (643)
-.+.-.+..+|..+|-++|.-|++ |++++++.|+.+.|+=+.- | ++|+|.+.+-.++
T Consensus 28 ~~l~aRFd~~LFs~~g~~ls~ylq------Ea~~tL~aL~~~~e~~~l~q~afLAErLlAQi~Al~re 89 (175)
T COG3923 28 ATLSARFDRHLFSENGQLLSFYLQ------EAGQTLTALKQAVEQDRLPQVAFLAERLLAQIEALSRE 89 (175)
T ss_pred ccHHHhhhHHHHhhcCchHHHHHH------HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 345556888999999999999985 8899999999998876655 4 3555655555443
No 206
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=28.51 E-value=1.9e+02 Score=29.32 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 006503 592 QLFIKCEEHLQRETEINQLIELLEKEVTQAK 622 (643)
Q Consensus 592 ~l~~~c~e~~~~~~el~~~~~~l~~el~~~~ 622 (643)
++..+|++..++=.+++|.+..++.+|+..|
T Consensus 79 k~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek 109 (209)
T COG5124 79 KLYDSSELLKKKIQEVKQDIATYKEEIDKEK 109 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 6888999999999999999999999998777
No 207
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.50 E-value=3.5e+02 Score=26.09 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 589 ENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCA 626 (643)
Q Consensus 589 en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~ 626 (643)
.+++|-.+-.+.++.=+.|..++..||.+|+.+..+..
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444443333
No 208
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.48 E-value=2.4e+02 Score=24.54 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 593 LFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 593 l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
|.|--+|.+.+.+.|.|.+..+..-.+...++-.||-.|-..
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666555555555554444444444444444444333
No 209
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.35 E-value=1.7e+02 Score=27.43 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 601 LQRETEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 601 ~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
.+|.+.|+..+..|+.+|.+.+++++++...++..
T Consensus 100 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 100 DKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666655555443
No 210
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=28.33 E-value=2e+02 Score=34.69 Aligned_cols=54 Identities=17% Similarity=0.078 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 582 SADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 582 ~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
..-=|.+||-+|...-|+-+.|..++++....+..|+++.+.++.||..|.+.-
T Consensus 705 q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~ 758 (961)
T KOG4673|consen 705 QLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIREL 758 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578999999999999999999999999999999999999999998765443
No 211
>PHA01750 hypothetical protein
Probab=28.26 E-value=1.6e+02 Score=25.23 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 607 INQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 607 l~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
.++..++|+.||++.+.+.+.|...+..-|
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 355677889999999999988877665433
No 212
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=28.20 E-value=2e+02 Score=28.99 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 593 LFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 593 l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
+..|=+|-++|-++|.+.-+.|+..|++++..-+.|..+|+.-+
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt 108 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLT 108 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888888888888888888888888888888776543
No 213
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=28.17 E-value=1.5e+02 Score=33.08 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 592 QLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 592 ~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
+..+.=..+++-|++|.+++.++.++|++.+++|..+-..|..-+..
T Consensus 325 ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~~~~ 371 (373)
T COG5019 325 KIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKSN 371 (373)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34444455667778888888888899999998888887777655543
No 214
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=28.04 E-value=3.3e+02 Score=25.79 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 583 ADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 583 ~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
+-.+-++.-.|.+.+++..++--+++-.+.+++.++.+...++..|-.+.+.+.++
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~ 84 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQ 84 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777777766777777777777777777777777766666543
No 215
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=27.78 E-value=1.2e+02 Score=28.66 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=19.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 594 FIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 594 ~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
|..+-++..-.++|+.+...++++|+....++..+...|+.
T Consensus 28 ~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~ 68 (158)
T PF03938_consen 28 FQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQS 68 (158)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555554444444443333
No 216
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=27.39 E-value=1.7e+02 Score=30.45 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhHHHHHHH--------HHHHHHHHHH
Q 006503 592 QLFIKCEEHLQRETEINQL--------IELLEKEVTQ 620 (643)
Q Consensus 592 ~l~~~c~e~~~~~~el~~~--------~~~l~~el~~ 620 (643)
-|+.-|+-|+..+++|++- |..|++++|+
T Consensus 69 ~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~ 105 (223)
T cd07605 69 ALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLEL 105 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3555788888888888866 6777777773
No 217
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=27.38 E-value=73 Score=35.97 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=43.4
Q ss_pred HHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 585 QICEENIQL---FIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 585 ~~~~en~~l---~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
..|+++-+| -.||.|-.++.+-|+++..+|+..++++|.+|+++-++++..+.
T Consensus 277 ~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~~~~ 332 (411)
T KOG1318|consen 277 ASCDYIRELQQTLQRARELENRQKKLESTNQELALRIEELKSEAGRHGLQVEPSKL 332 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 345555555 46899999999999999999999999999999998887766553
No 218
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=27.26 E-value=1.8e+02 Score=27.36 Aligned_cols=36 Identities=28% Similarity=0.221 Sum_probs=17.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 598 EEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVE 633 (643)
Q Consensus 598 ~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~ 633 (643)
+.|.+-..+++..|...++++++.|.+...--..++
T Consensus 77 e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~ 112 (139)
T PF05615_consen 77 ENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQ 112 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554444444444333333
No 219
>PRK10698 phage shock protein PspA; Provisional
Probab=27.03 E-value=2.2e+02 Score=29.29 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 592 QLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 592 ~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
.|-..-+.....-.+|+..+..|++.|+++|.|..-|.+-.++-+.+
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555667788888999999999999999998876665543
No 220
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=27.01 E-value=1.8e+02 Score=32.25 Aligned_cols=47 Identities=21% Similarity=0.202 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 583 ADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLS 629 (643)
Q Consensus 583 ~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~ 629 (643)
...|.+++.++-.+.+.++.+..+|..+...++.++++.+++.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777777788888888888888888888888888888877664
No 221
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=26.44 E-value=1.9e+02 Score=28.28 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=36.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006503 597 CEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQKT 640 (643)
Q Consensus 597 c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~~ 640 (643)
-+-+++|.++|+-.+..|..+|++.-.+..+|..+++..-++++
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888999999999999999999999999888887765544
No 222
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.19 E-value=3.4e+02 Score=29.48 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006503 585 QICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLK 624 (643)
Q Consensus 585 ~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~ 624 (643)
+|.+|...|...=++.++..++|.+.+..|+.|+++.+.+
T Consensus 54 ~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 54 KLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333
No 223
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=25.95 E-value=1e+02 Score=23.89 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 602 QRETEINQLIELLEKEVTQAKLKCA 626 (643)
Q Consensus 602 ~~~~el~~~~~~l~~el~~~~~~~~ 626 (643)
++-+||+|..=+||+|+.|++.-..
T Consensus 4 ~~ieelkqll~rle~eirett~sl~ 28 (46)
T PF08181_consen 4 KKIEELKQLLWRLENEIRETTDSLR 28 (46)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999999876443
No 224
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.87 E-value=2.4e+02 Score=29.38 Aligned_cols=55 Identities=27% Similarity=0.288 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 584 DQICEENIQLFIKCEEHL---QRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 584 ~~~~~en~~l~~~c~e~~---~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
++.|++|.+|--.-+-.- .+.-.++-...-||.||++-+++.+.+-....+-+||
T Consensus 130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667776665544422 2333445556667888888888888888888777765
No 225
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.64 E-value=1.8e+02 Score=29.32 Aligned_cols=42 Identities=31% Similarity=0.158 Sum_probs=25.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhh
Q 006503 599 EHLQRETEINQLIELLEKEVTQAKLKCAK----LSAYVEARKKQKT 640 (643)
Q Consensus 599 e~~~~~~el~~~~~~l~~el~~~~~~~~~----l~~~l~~~~~~~~ 640 (643)
+|+....+|.-+..+|+.|+++++.+++. +..|++...++++
T Consensus 124 ~~e~~~e~L~~k~~~l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~ 169 (200)
T cd07624 124 EYELSVEELNKKRLELLKEVEKLQDKLECANADLKADLERWKQNKR 169 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666677777776666663 4456666665544
No 226
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.63 E-value=85 Score=21.54 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006503 605 TEINQLIELLEKEVTQAK 622 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~ 622 (643)
+.|+-.|..||++|.+.+
T Consensus 4 ~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 4 NRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457778889999888654
No 227
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=25.59 E-value=3e+02 Score=27.72 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006503 613 LLEKEVTQAKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 613 ~l~~el~~~~~~~~~l~~~l~~~~~~ 638 (643)
+-++..++.+.+.++|..+|++.+++
T Consensus 150 ~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 150 EAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445566666777777777777665
No 228
>PRK14011 prefoldin subunit alpha; Provisional
Probab=25.49 E-value=2.9e+02 Score=26.86 Aligned_cols=56 Identities=29% Similarity=0.278 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 582 SADQICEENIQLFI-KCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 582 ~~~~~~~en~~l~~-~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
++++=+++=+..|. |+++..+....|...+.++..+++++..+..+-+..++++.+
T Consensus 81 ~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~~ 137 (144)
T PRK14011 81 YLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQA 137 (144)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566667777665 556666667777777777777777777665555555544443
No 229
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=25.19 E-value=2e+02 Score=32.82 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 585 QICEENIQLFIKC-EEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 585 ~~~~en~~l~~~c-~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
+=++||+++..+= +|.+.+.++|+|.|.+++.++=+.|--+.+|.-+=+.++.
T Consensus 409 ~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~t~ak~ 462 (514)
T KOG4370|consen 409 EELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEENTNAKQ 462 (514)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh
Confidence 4578888877665 5999999999999999999998888877777665555443
No 230
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=25.06 E-value=1.5e+02 Score=26.59 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 597 CEEHLQRETEINQLIELLEKEVTQAKLKCAKLS 629 (643)
Q Consensus 597 c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~ 629 (643)
+++...+-.+|+..+..|+.++.++..+...++
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 231
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=24.77 E-value=62 Score=37.33 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 604 ETEINQLIELLEKEVTQAKLKCAKLSAYV 632 (643)
Q Consensus 604 ~~el~~~~~~l~~el~~~~~~~~~l~~~l 632 (643)
+.++.|+|.+|++||++.|.+.+.|...|
T Consensus 26 ~~~~~qkie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 26 DIDLLQKIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 44566688888888888888877555544
No 232
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=24.70 E-value=2.7e+02 Score=25.96 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 584 DQICEENIQLFIKCEEHLQRETEINQ---------LIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 584 ~~~~~en~~l~~~c~e~~~~~~el~~---------~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
..+.+-=+++....++|......+.. ++.+.+.++++++.+|+++..++..
T Consensus 94 ~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~ 153 (194)
T cd07307 94 KEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIE 153 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666666655554 5778999999999999999886544
No 233
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=24.45 E-value=1.2e+02 Score=36.16 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 603 RETEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 603 ~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
+..+|.++|.+|+.|+.+.+++...++.++.+.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~ 112 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQ 112 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999888888777643
No 234
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=24.24 E-value=1.6e+02 Score=25.64 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 604 ETEINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 604 ~~el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
...|...+..|+-|+++.+-++.+|.+++..
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~ 42 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQELQDEYKQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888999999999999999999877654
No 235
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=24.20 E-value=4.1e+02 Score=27.68 Aligned_cols=56 Identities=23% Similarity=0.118 Sum_probs=46.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 580 TISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 580 ~~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
...+.+..++=..|=-.|..|++--+++..++..|+..+.+...|+++|-+..+.-
T Consensus 84 E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 84 EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778888888889999999999999999998888888888888888877754443
No 236
>PHA00727 hypothetical protein
Probab=24.12 E-value=1e+02 Score=31.68 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=15.5
Q ss_pred HHHhhhHHHHH-HHHHHHHHHHHHHHHHHH
Q 006503 598 EEHLQRETEIN-QLIELLEKEVTQAKLKCA 626 (643)
Q Consensus 598 ~e~~~~~~el~-~~~~~l~~el~~~~~~~~ 626 (643)
--|+|||.||+ |.-.+|+.||++-|+++.
T Consensus 45 kvyekrefelk~~qf~qlkael~kkkkk~k 74 (278)
T PHA00727 45 KVYEKREFELKKQQFEQLKAELSKKKKKFK 74 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666666664 344555555555555443
No 237
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.07 E-value=3.9e+02 Score=28.20 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 582 SADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 582 ~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
...++..+--.|..+|++-...-..|+..+..|+++|+++......|-.++++-+
T Consensus 76 e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 76 EIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK 130 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence 4566777777888888888888888888888888888876666555555555444
No 238
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=23.85 E-value=1.2e+02 Score=22.83 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHH---HHHHHhhhHHHHH
Q 006503 584 DQICEENIQLFI---KCEEHLQRETEIN 608 (643)
Q Consensus 584 ~~~~~en~~l~~---~c~e~~~~~~el~ 608 (643)
.+|..=|+++|+ +|.+.++++++|.
T Consensus 4 ~EI~~Lq~~~a~Gedv~~~LE~Kek~L~ 31 (35)
T PF08182_consen 4 AEIDVLQIQLADGEDVCKELEQKEKELS 31 (35)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 356667888885 7888888888875
No 239
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.46 E-value=4.2e+02 Score=27.47 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 590 NIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 590 n~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
-.+...+=.+......+|.+.+.+|+.|++..+...++|.+.++..+
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~ 83 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQE 83 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666677777777777777777777777777666554
No 240
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.44 E-value=1.3e+02 Score=25.54 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 606 EINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 606 el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
++...+..++.++++.+.+.++|..|+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666665554
No 241
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=23.40 E-value=1.7e+02 Score=25.42 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
.+++-.|++|+.|+..-+-+..++++||..+=.++
T Consensus 10 ~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~E~~ 44 (71)
T KOG4119|consen 10 PQMKKEVEQLKLEANIERIKVSKAAAELLEYCETH 44 (71)
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhc
Confidence 36788899999999999999999988887765443
No 242
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.18 E-value=3.6e+02 Score=25.14 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 590 NIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 590 n~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
++.||.+=.+.++.-.+|-..+.+|+..+.++-.|=++|..|-++-|
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr 49 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLR 49 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888888888888888888888877766555
No 243
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=23.07 E-value=3.6e+02 Score=28.47 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 582 SADQICEENIQLFIKCEEH----LQRETEINQLIELLEKEVTQAKLKCAKLSAYVE 633 (643)
Q Consensus 582 ~~~~~~~en~~l~~~c~e~----~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~ 633 (643)
....|-..|..|-.+..+. ...-.++...|..|+.||.+++.++++.+.+.+
T Consensus 231 el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 231 ELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 3445556666666666433 344445677788888888888888877766544
No 244
>PRK10780 periplasmic chaperone; Provisional
Probab=22.79 E-value=2.1e+02 Score=27.85 Aligned_cols=31 Identities=3% Similarity=0.019 Sum_probs=13.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006503 595 IKCEEHLQRETEINQLIELLEKEVTQAKLKC 625 (643)
Q Consensus 595 ~~c~e~~~~~~el~~~~~~l~~el~~~~~~~ 625 (643)
..|.++.+-.++|+......++||+....++
T Consensus 36 ~~~p~~k~~~~~le~~~~~~q~el~~~~~el 66 (165)
T PRK10780 36 QQVPQRTGVSKQLENEFKGRASELQRMETDL 66 (165)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333333
No 245
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=22.78 E-value=2e+02 Score=29.18 Aligned_cols=45 Identities=24% Similarity=0.129 Sum_probs=35.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhcc
Q 006503 598 EEHLQRETEINQLIELLEKEVTQAKLKCAK----LSAYVEARKKQKTME 642 (643)
Q Consensus 598 ~e~~~~~~el~~~~~~l~~el~~~~~~~~~----l~~~l~~~~~~~~~~ 642 (643)
.+|+..+..|.-+..+|+.++++++.+++. +..|++..+++++.|
T Consensus 122 ~~~e~~~~~L~~k~~~l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~d 170 (201)
T cd07622 122 YDLEKAEDALANKKQQGEEAVKEAKDELNEFVKKALEDVERFKKQKVRD 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677788999999999999999998875 666888877776643
No 246
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=22.75 E-value=3.5e+02 Score=29.10 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 589 ENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVE 633 (643)
Q Consensus 589 en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~ 633 (643)
|.++.+..++..+...++.+-++...+.||++.+.++++.-.+|.
T Consensus 180 Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~ 224 (269)
T PF05278_consen 180 EAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVK 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554444444444444444444444444444444444444333
No 247
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.73 E-value=3e+02 Score=28.84 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 006503 605 TEINQLIELLEKEVT---QAKLKCAKLSAYVEAR 635 (643)
Q Consensus 605 ~el~~~~~~l~~el~---~~~~~~~~l~~~l~~~ 635 (643)
++|+.++.+|+.++. +.+.|.++|...|..+
T Consensus 79 ~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 79 EELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 334444444444443 4456666666655543
No 248
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=22.63 E-value=2e+02 Score=30.39 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=36.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 582 SADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCA 626 (643)
Q Consensus 582 ~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~ 626 (643)
+...|.-||--|.++-+...-+..||.+.+..|+.||.+.|..|-
T Consensus 105 en~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 105 ENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 456778888888888888888888888888888888888877764
No 249
>PRK14150 heat shock protein GrpE; Provisional
Probab=22.61 E-value=1.6e+02 Score=29.86 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Q 006503 608 NQLIELLEKEVTQ----AKLKCAKLSAYVEARKKQ 638 (643)
Q Consensus 608 ~~~~~~l~~el~~----~~~~~~~l~~~l~~~~~~ 638 (643)
...+..|+.+|++ .+.++-||.|+.++-|+.
T Consensus 40 ~~~i~~l~~~l~~~~~~~kd~~lR~~AefeN~rkR 74 (193)
T PRK14150 40 DARIAELEAQLAEAQAEERDSVLRARAEVENIRRR 74 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666665 478888888888887754
No 250
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.54 E-value=3.1e+02 Score=27.98 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=27.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 597 CEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 597 c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
-...+..-.+|+..+..|+.+|+++|.+-..|.+-++.-+.
T Consensus 108 ~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 108 LAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667777777777777888777777776654443
No 251
>KOG3096 consensus Spliceosome-associated coiled-coil protein [Function unknown]
Probab=22.36 E-value=3.6e+02 Score=27.96 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006503 585 QICEENIQLFIK--CEEHLQRETEINQLIELLEKEVTQAKLK 624 (643)
Q Consensus 585 ~~~~en~~l~~~--c~e~~~~~~el~~~~~~l~~el~~~~~~ 624 (643)
.+..+|+.|..+ |+-|++.-+-|+.-++.+++||.+.|+.
T Consensus 112 ~~r~~NLeLM~k~g~eaw~~~ne~le~~l~~aqkelq~~kk~ 153 (225)
T KOG3096|consen 112 LVRNENLELMSKHGEEAWKQYNEVLEVMLTHAQKELQKTKKL 153 (225)
T ss_pred HHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888775 8999999999999999999999988754
No 252
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=22.28 E-value=1.6e+02 Score=34.81 Aligned_cols=41 Identities=27% Similarity=0.244 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006503 584 DQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLK 624 (643)
Q Consensus 584 ~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~ 624 (643)
++|.-||.-|.---|--++-...|+.+|++||.||.-+|.|
T Consensus 332 DeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~e 372 (832)
T KOG2077|consen 332 DELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAE 372 (832)
T ss_pred HhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555666666777666666554
No 253
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.15 E-value=1.8e+02 Score=24.27 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006503 605 TEINQLIELLEKEVTQAKL 623 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~ 623 (643)
.||+..|..|+.|++-++.
T Consensus 24 ~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEA 42 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555544433
No 254
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=22.10 E-value=2.7e+02 Score=28.50 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006503 618 VTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 618 l~~~~~~~~~l~~~l~~~~ 636 (643)
.-++...|.+|.+|+...|
T Consensus 191 n~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 191 NLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554444
No 255
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.00 E-value=5.3e+02 Score=24.50 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=16.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 599 EHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 599 e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
....++..|..++..++.-+...|.+..+|-.-++.
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 91 SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555554444555555544443333
No 256
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=21.98 E-value=2.1e+02 Score=25.75 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=18.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 596 KCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYV 632 (643)
Q Consensus 596 ~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l 632 (643)
+|.+....-..|.+.|.+|+++|+-.+.|-.+|...|
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444455555555555555555555554443
No 257
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.93 E-value=4.7e+02 Score=25.16 Aligned_cols=44 Identities=20% Similarity=0.159 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 592 QLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 592 ~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
..-.|-++++.+-.+|++...+++.||....+|..+|=.+|+.-
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666777766666666666666666666665543
No 258
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=21.68 E-value=4.4e+02 Score=27.65 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 586 ICEENIQLFIKCEEHLQRETEINQLIE----L-LEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 586 ~~~en~~l~~~c~e~~~~~~el~~~~~----~-l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
++.+=..|...|...+|.-.++.++++ . -.+||+-+|++|.++..+.+..|+
T Consensus 92 i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~ 148 (234)
T cd07686 92 PLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKE 148 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444777888888999899988877 2 457899999999999999888774
No 259
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=21.63 E-value=2.1e+02 Score=26.62 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=45.1
Q ss_pred eEEEEEeeeccCC-CccCCceEEEEeCceecccc--cc----cCCCCccCceEEEEeec----CccC--CCCCccc--cc
Q 006503 395 TAETTIGFIKEAP-ALSVSGFNVYHKNRLIRPFW--KV----TGDGSLKGNGVVGVLEA----NFIE--PTHDKQD--FE 459 (643)
Q Consensus 395 ~v~itiGf~kea~-~~~~~G~~vY~~nRLI~~~e--kV----g~~~~~~grGVIGVle~----nfle--PthnKQd--Fe 459 (643)
.+.+. ||+..+. ..+....++|-|||.|+... +. ...--..++.-+.+|.. +.++ ++-+|+. |.
T Consensus 31 ~~~i~-G~is~p~~~~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~l~~~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~ 109 (127)
T cd03483 31 GFKVK-GLISNANYSKKKIIFILFINNRLVECSALRRAIENVYANYLPKGAHPFVYLSLEIPPENVDVNVHPTKREVHFL 109 (127)
T ss_pred cEEEE-EEEcCchhcCCCceEEEEEcCCEecCHHHHHHHHHHHHHhCcCCCccEEEEEEEeChHHeeeccCCCccEEEec
Confidence 35565 7775431 23456789999999997311 11 11111345555555543 2233 2667777 44
Q ss_pred c-cHHHHHHHHHHHHHH
Q 006503 460 R-STLFVRLESKLKQMT 475 (643)
Q Consensus 460 ~-t~~y~~l~~~L~e~l 475 (643)
+ ..++..+...+.+.|
T Consensus 110 ~e~~i~~~i~~~v~~~L 126 (127)
T cd03483 110 NEEEIIERIQKLVEDKL 126 (127)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 4 567777777776654
No 260
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=21.57 E-value=3.7e+02 Score=30.73 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=41.2
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 581 ISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAY 631 (643)
Q Consensus 581 ~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~ 631 (643)
.+-.+|-.||.+|+..=++.++++.+|.....+++.+-++...|-+++..+
T Consensus 183 ~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~e 233 (447)
T KOG2751|consen 183 KELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWRE 233 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999988888888877777776666553
No 261
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.41 E-value=1.9e+02 Score=30.56 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=23.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 595 IKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSA 630 (643)
Q Consensus 595 ~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~ 630 (643)
.+..-||+|-.||+..+.+++.++.+.+.|.+.|.+
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777776666666666666666666666655
No 262
>PRK11239 hypothetical protein; Provisional
Probab=21.41 E-value=1.4e+02 Score=30.88 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 605 TEINQLIELLEKEVTQAKLKCAKLSAYV 632 (643)
Q Consensus 605 ~el~~~~~~l~~el~~~~~~~~~l~~~l 632 (643)
.+|++.|..||.|+.+.|...++|.+++
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5588888888888888888888887765
No 263
>PRK00295 hypothetical protein; Provisional
Probab=21.34 E-value=2.1e+02 Score=24.21 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 601 LQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 601 ~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
+..=++|+..|++..++|...++++..|...|....
T Consensus 18 E~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 18 DDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445578888899999999888888888877766543
No 264
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=21.34 E-value=1.7e+02 Score=26.82 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=13.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006503 594 FIKCEEHLQRETEINQLIELLEKEVTQ 620 (643)
Q Consensus 594 ~~~c~e~~~~~~el~~~~~~l~~el~~ 620 (643)
|-+|--|...-+.|++.-..|+++.++
T Consensus 56 Y~Qs~~Yv~~NerLqqa~~~Lkkk~e~ 82 (97)
T PF15136_consen 56 YQQSRTYVAMNERLQQARDQLKKKCEE 82 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444444443333
No 265
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=21.32 E-value=1.6e+02 Score=25.83 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006503 607 INQLIELLEKEVTQAKLKCAKLSAYVEARKK 637 (643)
Q Consensus 607 l~~~~~~l~~el~~~~~~~~~l~~~l~~~~~ 637 (643)
+...+.+|++|.++.+.|..+|..|......
T Consensus 40 ~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 40 LFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344778888888888888888888776653
No 266
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=21.27 E-value=2.9e+02 Score=24.83 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=20.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 600 HLQRETEINQLIELLEKEVTQAKLKCAKLSAYVE 633 (643)
Q Consensus 600 ~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~ 633 (643)
..++-+.|+..|..|+++++...++...|..+|.
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666665554
No 267
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=20.94 E-value=2.6e+02 Score=37.73 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=11.5
Q ss_pred HhccchhhhhCCCceEEEEEE
Q 006503 116 LLDNAVDEVQNGATFVKVDRV 136 (643)
Q Consensus 116 LIDNAiDA~~~gAt~V~I~i~ 136 (643)
+-||||-++..+-..-.|-|+
T Consensus 154 vad~AYr~mL~~renQSiLiT 174 (1930)
T KOG0161|consen 154 VADEAYRNMLQDRENQSILIT 174 (1930)
T ss_pred HHHHHHHHHHhcCCCceEeee
Confidence 347888887544333344443
No 268
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.91 E-value=5.1e+02 Score=21.76 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 612 ELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 612 ~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
..+++.|.++..+-..|.++++..++++
T Consensus 28 ~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555443
No 269
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.81 E-value=3e+02 Score=31.81 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 581 ISADQICEENIQLFIKCEEHL--------QRETEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 581 ~~~~~~~~en~~l~~~c~e~~--------~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
.....|.+||.+|..|-..-. -...||.+...+|++|+.+++....+|...|+..
T Consensus 80 ~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 80 SENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345678899998877433222 2356888899999999999999999888877653
No 270
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.78 E-value=1.8e+02 Score=29.00 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=24.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 579 VTISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCA 626 (643)
Q Consensus 579 ~~~~~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~ 626 (643)
.......|..++.+|-.+|.++...=.|++..+..|.-|+.-.+-++.
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~ 161 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN 161 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555444444444444333
No 271
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.76 E-value=6e+02 Score=23.77 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 583 ADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSA 630 (643)
Q Consensus 583 ~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~ 630 (643)
-+.|..-|..|-+.-....+|-.||+-+|.+++..|+.-|--+.+|.+
T Consensus 39 kd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~ 86 (107)
T PF09304_consen 39 KDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELES 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777778888888888888888888774433333333
No 272
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=20.75 E-value=4.8e+02 Score=25.47 Aligned_cols=54 Identities=20% Similarity=0.154 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006503 586 ICEENIQLFIKCEEHLQRETEINQ---LIELLEKEVTQAKLKCAKLSAYVEARKKQK 639 (643)
Q Consensus 586 ~~~en~~l~~~c~e~~~~~~el~~---~~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 639 (643)
+-+|...|-.+-.+.-+.=+.|+- -+..|..+|++.+.++++...+.+++..++
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443344443 355566666666666665555444444433
No 273
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.61 E-value=2.1e+02 Score=34.64 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 599 EHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 599 e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
--++|..+|+..+..|+.||......|..|-.|++.-|
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777766666666665433
No 274
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.60 E-value=2.4e+02 Score=26.00 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=25.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 600 HLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 600 ~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
+.+|-+.|+..+..|++++...+.+..++...++.
T Consensus 92 l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 92 LDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777888888777777777776654
No 275
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.54 E-value=3.9e+02 Score=28.18 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 006503 591 IQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQKTM 641 (643)
Q Consensus 591 ~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~ 641 (643)
..+-.+.+|.+.+=.|+-..-+.|.+||++...||..+.-.|+.-+.+.|.
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~ 181 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSR 181 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 276
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.47 E-value=4.1e+02 Score=25.07 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 006503 589 ENIQLFIKCEEHLQRETEINQLIELLEKEVTQA 621 (643)
Q Consensus 589 en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~ 621 (643)
|.-.|..+|....+...++.+.|..|-.+.++.
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555554444444
No 277
>PRK09697 protein secretion protein GspB; Provisional
Probab=20.42 E-value=59 Score=30.51 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=18.3
Q ss_pred CCCceeEeccCCCCCCCcccc
Q 006503 6 EKPQNVVELTSSDDEDNVAAG 26 (643)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (643)
.+|.+||+--|.|||.||++-
T Consensus 84 KqPLPV~E~V~~edE~gvavE 104 (139)
T PRK09697 84 KQPLPVVESVEEEDEPGVAVE 104 (139)
T ss_pred cCCCCCccccccccccccccc
Confidence 478999999999999999984
No 278
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.31 E-value=3.1e+02 Score=32.00 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 589 ENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 589 en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
.+.-++.-|+...+|=...++.-..|+.||++++.++.+|--||++-|
T Consensus 435 Ka~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 435 KAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888888777778888899999999999999999998776
No 279
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.21 E-value=2e+02 Score=29.44 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 006503 595 IKCEEHLQRETEINQLI----------ELLEKEVTQAKLKCAKLSAYVEA 634 (643)
Q Consensus 595 ~~c~e~~~~~~el~~~~----------~~l~~el~~~~~~~~~l~~~l~~ 634 (643)
..-++++.+|+||+.+- ..|+.+|.|.+..++.|.-.|=.
T Consensus 49 eel~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llrQLPs 98 (211)
T COG3167 49 EELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLRQLPS 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34678888899998764 46888999999999988876543
No 280
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=2.9e+02 Score=26.18 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=31.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 598 EEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARK 636 (643)
Q Consensus 598 ~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~~ 636 (643)
.+.++|.+-|+..|..|++.-+-.+.+++.|-++|..+-
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888888888888888888888888888887653
No 281
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.16 E-value=3.2e+02 Score=31.22 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 583 ADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 583 ~~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
...+.+++.+|-..=++.+.+..+++..+.+|+.+|++++.+.+.+..+...+
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888888888888888888888888888888877766554
No 282
>PRK04406 hypothetical protein; Provisional
Probab=20.10 E-value=2.2e+02 Score=24.62 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006503 601 LQRETEINQLIELLEKEVTQAKLKCAKLSAYVEAR 635 (643)
Q Consensus 601 ~~~~~el~~~~~~l~~el~~~~~~~~~l~~~l~~~ 635 (643)
+..=++|+..|++..++|...+++|..|...|...
T Consensus 24 E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 24 EQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456777778888888888887777776666543
No 283
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=20.01 E-value=99 Score=24.31 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006503 584 DQICEENIQLFIKCEEHLQRETEINQLIELLEKEV 618 (643)
Q Consensus 584 ~~~~~en~~l~~~c~e~~~~~~el~~~~~~l~~el 618 (643)
.+|.-.|-.|.++|-+++++-++|.+.-..|++++
T Consensus 10 ~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 10 RELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------HHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 35566677777888777777777766666666553
Done!