BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006504
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C46|A Chain A, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|B Chain B, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|C Chain C, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|D Chain D, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
Length = 241
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 114/190 (60%), Gaps = 2/190 (1%)
Query: 70 DQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQ 129
D +N ++S NK+PP WL+CP GQ + G +P K L ++ + R+
Sbjct: 12 DLGTENLYFQSMAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSM 71
Query: 130 VIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYE 189
+ + L+ L K+GL++DLTNT+R+Y +D++KEGIK++K+QCKG P + F+
Sbjct: 72 LSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRL 131
Query: 190 VTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKN 249
+F +++ + I VHCTHG NRTG++I FL+ S+ A+ FA+ RPPGIYK
Sbjct: 132 CERF--NERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKG 189
Query: 250 EYIEALYTFY 259
+Y++ L+ Y
Sbjct: 190 DYLKELFRRY 199
>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of
Mouse Mrna Capping Enzyme
Length = 210
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 114/192 (59%), Gaps = 3/192 (1%)
Query: 84 NKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGL 143
NK+PP WL+CP GQ + G +P K L ++ + R+ + + L+ L K+ L
Sbjct: 4 NKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMSL 63
Query: 144 VIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKY 203
++DLTNT+R+Y +D++KEGIK++K+QCKG P + F+ +F ++ +
Sbjct: 64 LVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERF--NERSPPEL 121
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKR 263
I VHCTHG NRTG++I FL+ S+ A+ FA+ RPPGIYK +Y++ L+ Y +
Sbjct: 122 IGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDIE 181
Query: 264 LDSTPCPSTPEW 275
++ P P P+W
Sbjct: 182 -EAPPPPVLPDW 192
>pdb|1I9T|A Chain A, Crystal Structure Of The Oxidized Rna Triphosphatase
Domain Of Mouse Mrna Capping Enzyme
Length = 210
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 113/192 (58%), Gaps = 3/192 (1%)
Query: 84 NKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGL 143
NK+PP WL+CP GQ + G +P K L ++ + R+ + + L+ L K+ L
Sbjct: 4 NKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMSL 63
Query: 144 VIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKY 203
++DLTNT+R+Y +D++KEGIK++K+QCKG P + F+ +F ++ +
Sbjct: 64 LVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERF--NERSPPEL 121
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKR 263
I VH THG NRTG++I FL+ S+ A+ FA+ RPPGIYK +Y++ L+ Y +
Sbjct: 122 IGVHXTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDIE 181
Query: 264 LDSTPCPSTPEW 275
++ P P P+W
Sbjct: 182 -EAPPPPVLPDW 192
>pdb|3RTX|A Chain A, Crystal Structure Of Mammalian Capping Enzyme (Mce1) And
Pol Ii Ctd Complex
pdb|3RTX|B Chain B, Crystal Structure Of Mammalian Capping Enzyme (Mce1) And
Pol Ii Ctd Complex
Length = 343
Score = 131 bits (330), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 131/238 (55%), Gaps = 25/238 (10%)
Query: 329 CYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLI-TIDGCY 387
C+Q F G FPG+ PVS++ N++LL Q+ Y +WKADGTRYMMLI + +
Sbjct: 33 CHQ-----FCGWEGSGFPGAQPVSMDKQNIRLLEQKPYKVSWKADGTRYMMLIDGTNEVF 87
Query: 388 LIDRCFN-FRRVQMRFPCRNSNEGLGEKTHHF--TLLDGEMIIDKLPDSRRQERRYLIYD 444
+IDR + F + FP R + H TLLDGEMIIDK+ + + RYLIYD
Sbjct: 88 MIDRDNSVFHVSNLEFPFRK------DLRMHLSNTLLDGEMIIDKV--NGQAVPRYLIYD 139
Query: 445 MMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWL 504
++ N V + F R + +E+E+I PR+ + + EPF VR K F+
Sbjct: 140 IIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQ------EPFSVRPKQFFD 193
Query: 505 LSTVNKLLK-EFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVT 561
++ KLL+ F ++SH+ DGL+FQ Y P + +LKWK +NSVDF ++T
Sbjct: 194 INISRKLLEGNFAKEVSHEMDGLIFQPIGK-YKPGRCDDILKWKPPSLNSVDFRLKIT 250
>pdb|3S24|A Chain A, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|B Chain B, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|C Chain C, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|D Chain D, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|E Chain E, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|G Chain G, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|F Chain F, Crystal Structure Of Human Mrna Guanylyltransferase
Length = 347
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 130/238 (54%), Gaps = 25/238 (10%)
Query: 329 CYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLI-TIDGCY 387
C+Q F G FPG+ PVS++ N++LL + Y +WKADGTRYMMLI + +
Sbjct: 29 CHQ-----FCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVF 83
Query: 388 LIDRCFN-FRRVQMRFPCRNSNEGLGEKTHHF--TLLDGEMIIDKLPDSRRQERRYLIYD 444
+IDR + F + FP R + H TLLDGEMIID++ + + RYLIYD
Sbjct: 84 MIDRDNSVFHVSNLEFPFRK------DLRMHLSNTLLDGEMIIDRV--NGQAVPRYLIYD 135
Query: 445 MMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWL 504
++ N V + F R + +E+E+I PR+ + + EPF VR K F+
Sbjct: 136 IIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQ------EPFSVRNKPFFD 189
Query: 505 LSTVNKLLK-EFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVT 561
+ T KLL+ F ++SH+ DGL+FQ Y P + +LKWK +NSVDF ++T
Sbjct: 190 ICTSRKLLEGNFAKEVSHEMDGLIFQP-TGKYKPGRCDDILKWKPPSLNSVDFRLKIT 246
>pdb|3KYH|C Chain C, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
pdb|3KYH|D Chain D, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
Length = 461
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 112/223 (50%), Gaps = 18/223 (8%)
Query: 345 FPGSHPVSL-NSDNLQLLRQRYYYATWKADGTRYMMLITID------GCYLIDRCFNFRR 397
FPGS PVS +SD + L YY K DG R +M I I+ GC++IDR N+
Sbjct: 45 FPGSQPVSFQHSDVEEKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYL 104
Query: 398 VQ-MRFP--CRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVI 454
V RFP + E L E TLLDGE++I P ++ QE RYL++D +AIN +
Sbjct: 105 VNGFRFPRLPQKKKEELLETLQDGTLLDGELVIQTNPMTKLQELRYLMFDCLAINGRCLT 164
Query: 455 ERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKE 514
+ P R L KE +P ++ Y +R + PF++ K + K+ K
Sbjct: 165 QSPTSSRLAHLGKEFFKPY-FDLRAAYPNRCTTF-----PFKISMKHMDFSYQLVKVAKS 218
Query: 515 FIPKLSHDADGLVFQGWDDPYVPRTHEG-LLKWKYARMNSVDF 556
+ KL H +DGL+F PY + LLKWK + N+VDF
Sbjct: 219 -LDKLPHLSDGLIFTPVKAPYTAGGKDSLLLKWKPEQENTVDF 260
>pdb|1P16|A Chain A, Structure Of An Mrna Capping Enzyme Bound To The
Phosphorylated Carboxyl-Terminal Domain Of Rna
Polymerase Ii
pdb|1P16|B Chain B, Structure Of An Mrna Capping Enzyme Bound To The
Phosphorylated Carboxyl-Terminal Domain Of Rna
Polymerase Ii
Length = 395
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 15/229 (6%)
Query: 339 GRGNMQFPGSHPVSLNSDNLQ-LLRQRYYYATWKADGTRYMMLITID-----GCYLIDRC 392
GR N FPGS PVS +L+ L Q+ Y+ K DG R ++ + D G +L+ R
Sbjct: 34 GRRNTGFPGSQPVSFERRHLEETLXQKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRE 93
Query: 393 FNFRRV-QMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQA 451
++ + + FP + HH TLLDGE++++ + RY+I+D +AI+
Sbjct: 94 NDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENR-NVSEPVLRYVIFDALAIHGK 152
Query: 452 SVIERPFYERWKMLEKEVIEP-RNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNK 510
+I+RP +R + + V +P N+++HN +P + PF+V K +
Sbjct: 153 CIIDRPLPKRLGYITENVXKPFDNFKKHNPDIVNSPEF-----PFKVGFKTXLTSYHADD 207
Query: 511 LLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFE 559
+L + KL H +DGL++ + PYV T + LLKWK A N+VDF E
Sbjct: 208 VLSK-XDKLFHASDGLIYTCAETPYVFGTDQTLLKWKPAEENTVDFQLE 255
>pdb|1YN9|A Chain A, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|B Chain B, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|C Chain C, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
Length = 169
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 9/172 (5%)
Query: 86 LPPGWLDCPPFGQEIGGC-IIPSKVPLS-EFFNDCIPPGKRYSFKQVIHQLRVLGRKLGL 143
P W + GQ I +I K PL E F ++ +Q++ Q +G
Sbjct: 3 FPARWHNYLQCGQVIKDSNLICFKTPLRPELFAYVTSEEDVWTAEQIVKQ----NPSIGA 58
Query: 144 VIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKY 203
+IDLTNT++YY + G+ + KIQ G+ +P + V F+ V +F +K
Sbjct: 59 IIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQ-TLPPESIVQEFIDTVKEF--TEKCPGML 115
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEAL 255
+ VHCTHG NRTGYM+ +LM + ++ +AI +F + R I + Y++ L
Sbjct: 116 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAIDRFEKARGHKIERQNYVQDL 167
>pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKM|B Chain B, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
pdb|1CKO|A Chain A, Structure Of Mrna Capping Enzyme In Complex With The Cap
Analog Gpppg
Length = 330
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 99/225 (44%), Gaps = 34/225 (15%)
Query: 344 QFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLIT----IDGCYLIDRCFNFRRVQ 399
+ PG +PVS+ + + L+Q Y + K DG R+MM T C +IDR +
Sbjct: 55 RLPGPNPVSIERKDFEKLKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLP 114
Query: 400 MRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFY 459
+ R +G ++ DGE+ +D + ++ ++++D + ++ +V +
Sbjct: 115 FKNIPRVLFQG--------SIFDGELCVDIV----EKKFAFVLFDAVVVSGVTVSQMDLA 162
Query: 460 ERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKL 519
R+ +++ + E +N +P +R K+ W+ ++K+ + K
Sbjct: 163 SRFFAMKRSLKEFKNVPE---------------DPAILRYKE-WIPLEHPTIIKDHLKKA 206
Query: 520 S--HDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTD 562
+ + DGL+ D+P + + L K K +++DF+ D
Sbjct: 207 NAIYHTDGLIIMSVDEPVIYGRNFNLFKLKPGTHHTIDFIIMSED 251
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
Length = 330
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 98/225 (43%), Gaps = 34/225 (15%)
Query: 344 QFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLIT----IDGCYLIDRCFNFRRVQ 399
+ PG +PVS+ + + L+Q Y + DG R+MM T C +IDR +
Sbjct: 55 RLPGPNPVSIERKDFEKLKQNKYVVSEXTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLP 114
Query: 400 MRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFY 459
+ R +G ++ DGE+ +D + ++ ++++D + ++ +V +
Sbjct: 115 FKNIPRVLFQG--------SIFDGELCVDIV----EKKFAFVLFDAVVVSGVTVSQMDLA 162
Query: 460 ERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKL 519
R+ +++ + E +N +P +R K+ W+ ++K+ + K
Sbjct: 163 SRFFAMKRSLKEFKNVPE---------------DPAILRYKE-WIPLEHPTIIKDHLKKA 206
Query: 520 S--HDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTD 562
+ + DGL+ D+P + + L K K +++DF+ D
Sbjct: 207 NAIYHTDGLIIMSVDEPVIYGRNFNLFKLKPGTHHTIDFIIMSED 251
>pdb|3RGO|A Chain A, Crystal Structure Of Ptpmt1
Length = 157
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 147 LTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILV 206
L NT++ + KK G++ +++ VP A+++ V QF + + + + V
Sbjct: 44 LCNTSKEW-----KKAGVEQLRLSTVDMTGVPTLANLHKGV----QFALKYQALGQCVYV 94
Query: 207 HCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHE 261
HC G +R+ M+ +L++ + S +AI+ A++R + +E L F+ E
Sbjct: 95 HCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEVLKEFHKE 149
>pdb|4ERC|A Chain A, Structure Of Vhz Bound To Metavanadate
pdb|4ERC|B Chain B, Structure Of Vhz Bound To Metavanadate
Length = 150
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 206 VHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKR 263
VHC G RTG M+ +L++ + ++ AI + +RP I E +A++ FY +
Sbjct: 93 VHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQFYQRTK 150
>pdb|2Y96|A Chain A, Structure Of Human Dual-Specificity Phosphatase 27
pdb|2Y96|B Chain B, Structure Of Human Dual-Specificity Phosphatase 27
Length = 219
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 26/108 (24%)
Query: 159 LKKEGIKHVKIQCKGR---DAVPD------------------NASVNNFVYEVTQFLSR- 196
L+K G HV GR D PD ++ F Y F+ R
Sbjct: 75 LQKAGFTHVLNAAHGRWNVDTGPDYYRDMDIQYHGVEADDLPTFDLSVFFYPAAAFIDRA 134
Query: 197 --QKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVR 242
HSK ILVHC G +R+ +++ +LM + M++ AI++ A+ R
Sbjct: 135 LSDDHSK--ILVHCVMGRSRSATLVLAYLMIHKDMTLVDAIQQVAKNR 180
>pdb|2I6I|A Chain A, Crystal Structures Of The Archaeal Sulfolobus Ptp-Fold
Phosphatase
pdb|2I6J|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphate Ion
pdb|2I6M|A Chain A, Crystal Structure Of The Complexes Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Tungstate
pdb|3RO1|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Terpyridine
Platinum(Ii)
Length = 161
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 154 YPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQK---HSKKYILVHCTH 210
Y S LKK G++ + I +PD ++ +QFL+ K K+ LVHC
Sbjct: 50 YYLSILKKNGLQPLHI------PIPDGGVPSD-----SQFLTIMKWLLSEKEGNLVHCVG 98
Query: 211 GHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNE 250
G RTG ++ +L+ ++ + V AI + VRP + E
Sbjct: 99 GIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAVQTYE 138
>pdb|3RGQ|A Chain A, Crystal Structure Of Ptpmt1 In Complex With Pi(5)p
Length = 156
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 147 LTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILV 206
L NT++ + KK G++ +++ VP A+++ V QF + + + + V
Sbjct: 45 LCNTSKEW-----KKAGVEQLRLSTVDMTGVPTLANLHKGV----QFALKYQALGQCVYV 95
Query: 207 HCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHE 261
H G +R+ M+ +L++ + S +AI+ A++R + +E L F+ E
Sbjct: 96 HSKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEVLKEFHKE 150
>pdb|2IMG|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
23 From Homo Sapiens In Complex With Ligand Malate Ion
Length = 151
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 206 VHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKR 263
VHC G RTG + +L++ + ++ AI + +RP I E +A++ FY +
Sbjct: 94 VHCALGFGRTGTXLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQFYQRTK 151
>pdb|3S4E|A Chain A, Crystal Structrue Of A Novel Mitogen-Activated Protein
Kinase Phosphatase, Skrp1
Length = 144
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 189 EVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYK 248
E +F+ K +LVH G +R +++ FLM S+ S A RP
Sbjct: 69 ECFEFIEEAKRKDGVVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNARPSICPN 128
Query: 249 NEYIEALYTFYHEKR 263
+ ++E L T+ K
Sbjct: 129 SGFMEQLRTYQEGKE 143
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 190 VTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGI 246
V +FL ++++ I VHC G RTG +I ++M+ M+ A+ I RP +
Sbjct: 258 VKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSV 314
>pdb|2RF6|A Chain A, Crystal Structure Of The Vaccinia Virus Dual-Specificity
Phosphatase Vh1
pdb|3CM3|A Chain A, High Resolution Crystal Structure Of The Vaccinia Virus
Dual-Specificity Phosphatase Vh1
Length = 176
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 140 KLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNAS-VNNFVYEVTQFLSRQK 198
K V++LT P S++ I H+ + V D + ++ + +VT FLS+
Sbjct: 56 KFKYVLNLTMDKYTLPNSNI---NIIHIPL-------VDDTTTDISKYFDDVTAFLSKCD 105
Query: 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSV 231
+ +LVH G NR+G MI+ +LM S+
Sbjct: 106 QRNEPVLVHSAAGVNRSGAMILAYLMSKNKESL 138
>pdb|2DXP|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphopeptides
A-(P)y-R
pdb|2I6O|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Phosphopeptides
N-g-(p)y-k-n
pdb|2I6P|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Pnpp
Length = 161
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 154 YPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQK---HSKKYILVHCTH 210
Y S LKK G++ + I +PD ++ +QFL+ K K+ LVH
Sbjct: 50 YYLSILKKNGLQPLHI------PIPDGGVPSD-----SQFLTIMKWLLSEKEGNLVHSVG 98
Query: 211 GHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNE 250
G RTG ++ +L+ ++ + V AI + VRP + E
Sbjct: 99 GIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAVQTYE 138
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 140 KLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNAS-VNNFVYEVTQFLSRQK 198
K V++LT P S++ I H+ + V D + ++ + +VT FLS+
Sbjct: 73 KFKYVLNLTXDKYTLPNSNIN---IIHIPL-------VDDTTTDISKYFDDVTAFLSKCD 122
Query: 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSV 231
+ +LVHC G NR+G I+ +L S+
Sbjct: 123 QRNEPVLVHCAAGVNRSGAXILAYLXSKNKESL 155
>pdb|2P4D|A Chain A, Structure-Assisted Discovery Of Variola Major H1
Phosphatase Inhibitors
Length = 172
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 140 KLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNAS-VNNFVYEVTQFLSRQK 198
K V++LT P S++ I H+ + V D + ++ + +VT FLS+
Sbjct: 52 KFKYVLNLTXDKYTLPNSNIN---IIHIPL-------VDDTTTDISKYFDDVTAFLSKCD 101
Query: 199 HSKKYILVHCTHGHNRTGYMIVHFL 223
+ +LVHC G NR+G I+ +L
Sbjct: 102 QRNEPVLVHCVAGVNRSGAXILAYL 126
>pdb|2GWO|A Chain A, Crystal Structure Of Tmdp
pdb|2GWO|B Chain B, Crystal Structure Of Tmdp
pdb|2GWO|C Chain C, Crystal Structure Of Tmdp
pdb|2GWO|D Chain D, Crystal Structure Of Tmdp
Length = 198
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIK 236
+LVHC G +R+ +++ FLM ++M++ +AI+
Sbjct: 134 VLVHCAMGVSRSATLVLAFLMICENMTLVEAIQ 166
>pdb|2WW8|A Chain A, Structure Of The Pilus Adhesin (Rrga) From Streptococcus
Pneumoniae
Length = 893
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 87/400 (21%), Positives = 135/400 (33%), Gaps = 72/400 (18%)
Query: 270 PSTPEWKRELDLNGEXXXXXXXXXXXXXXLHENNEVTMTNDDVLGDEIPNDQQDAFRHFC 329
PST +W E++ NG EN E + L D+ P
Sbjct: 112 PSTKQWTVEVEKNGRTTVQGEQV--------ENRE------EALSDQYPQTGTYPDVQTP 157
Query: 330 YQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYL- 388
YQ +K++ G N Q +P + + Y D +Y + +T+ G +
Sbjct: 158 YQIIKVD-GSEKNGQHKALNPNPYERVIPEGTLSKRIYQVNNLDDNQYGIELTVSGKTVY 216
Query: 389 --------IDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRY 440
+D RN N E+ T +IDK+
Sbjct: 217 EQKDKSVPLDVVILLDNSNSMSNIRNKNARRAERAGEAT----RSLIDKITSDSENRVAL 272
Query: 441 LIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRK 500
+ Y AS I F +EK V + +N +R N + ++ YD F K
Sbjct: 273 VTY-------ASTI---FDGTEFTVEKGVAD-KNGKRLN----DSLFWNYDQTSFTTNTK 317
Query: 501 DFWLLSTVNKL-----LKEFIPKLSHDADG--LVFQGWDDPYVPRTHEGLLKW-----KY 548
D+ L N LK +P + D DG L++Q T + L+K +
Sbjct: 318 DYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFG----ATFTQKALMKADEILTQQ 373
Query: 549 ARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTGSFSSQLTSFLKQTPAL-LFW 607
AR NS +F +TD + Y + + F S+ +QL +F ++P
Sbjct: 374 ARQNSQKVIFHITDGVPTMSYP--------INFNHATFAPSYQNQLNAFFSKSPNKDGIL 425
Query: 608 MPKFVFYIRSPSHDAYNGIKPK----MDPLVMLNGAPIQF 643
+ F+ S H G D V GAP F
Sbjct: 426 LSDFITQATSGEHTIVRGDGQSYQMFTDKTVYEKGAPAAF 465
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPG 245
+LVHC G++R+ +++ +LM Q M V A+ + R G
Sbjct: 119 VLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIG 160
>pdb|3F81|A Chain A, Interaction Of Vhr With Sa3
pdb|3F81|B Chain B, Interaction Of Vhr With Sa3
Length = 183
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPG 245
+LVHC G++R+ +++ +LM Q M V A+ + R G
Sbjct: 118 VLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIG 159
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 190 VTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGI 246
V +FL ++++ I VH G RTG +I ++M+ M+ A+ I RP +
Sbjct: 258 VKEFLDICENAEGAIAVHSKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSV 314
>pdb|2PQ5|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|B Chain B, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|C Chain C, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|D Chain D, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
Length = 205
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIK 236
+LVHC G +R+ +++ FLM ++M++ +AI+
Sbjct: 134 VLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQ 166
>pdb|2E0T|A Chain A, Crystal Structure Of Catalytic Domain Of Dual Specificity
Phosphatase 26, Ms0830 From Homo Sapiens
Length = 151
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKN 249
ILVHC G +R+ +++ +LM +++ +AIKK + R GI N
Sbjct: 88 ILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHR--GIIPN 131
>pdb|2OUD|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mkp5
Length = 177
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 202 KYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKN-EYIEALYTFYH 260
K +L+HC G +R+ +++ +LM+ M++ A KF + + P I N ++ L F
Sbjct: 88 KGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAY-KFVKGKRPIISPNLNFMGQLLEFEE 146
Query: 261 EKRLDSTPCPSTPEW 275
+ TP TP+
Sbjct: 147 DLNNGVTPRILTPKL 161
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 178 PDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLM-RSQSMSVAQAIK 236
P + F ++ Q+LS + +HC G RTG MI +L+ R + + +A+
Sbjct: 90 PQLELIKPFCEDLDQWLSEDDNH--VAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALD 147
Query: 237 KFAEVR 242
+ EVR
Sbjct: 148 FYGEVR 153
>pdb|1ZZW|A Chain A, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
pdb|1ZZW|B Chain B, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
Length = 149
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 202 KYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRP 243
K +L+HC G +R+ +++ +LM+ M++ A K RP
Sbjct: 84 KGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP 125
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYI--EALYTFYHE 261
I+VHC+ G RTG IV M + + + + + V +N + E Y F HE
Sbjct: 226 IVVHCSAGVGRTGCFIVIDAML-ERIKTEKTVDVYGHVTLMRSQRNYMVQTEDQYGFIHE 284
Query: 262 KRLDSTPCPSTPEWKREL 279
L++ C +T R L
Sbjct: 285 ALLEAVGCGNTEVPARSL 302
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYI--EALYTFYHE 261
I+VHC+ G RTG IV M + + + + + V +N + E Y+F HE
Sbjct: 224 IVVHCSAGVGRTGCFIVIDAML-ERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHE 282
Query: 262 KRLDSTPCPSTPEWKREL 279
L++ C +T R L
Sbjct: 283 ALLEAVGCGNTEVPARSL 300
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 176 AVPDNASVNNFVYEVTQFLSRQKHSKKY----ILVHCTHGHNRTGYMIVHFLMRSQSMSV 231
A PD+ V + + FL R K ++VHC+ G RTG IV M + M
Sbjct: 181 AWPDHG-VPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAML-ERMKH 238
Query: 232 AQAIKKFAEVRPPGIYKNEYI--EALYTFYHEKRLDSTPCPSTPEWKREL 279
+ + + V +N + E Y F HE L++ C T R L
Sbjct: 239 EKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNL 288
>pdb|1J4X|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase C124s
Mutant- Peptide Complex
Length = 184
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPG 245
+LVH G++R+ +++ +LM Q M V A+ + R G
Sbjct: 119 VLVHSREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIG 160
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 176 AVPDNASV-NNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIV 220
VPD + NF Y V ++ +Q + ILVHC+ G RTG I
Sbjct: 212 GVPDTTDLLINFRYLVRDYM-KQSPPESPILVHCSAGVGRTGTFIA 256
>pdb|2G6Z|A Chain A, Crystal Structure Of Human Dusp5
pdb|2G6Z|B Chain B, Crystal Structure Of Human Dusp5
pdb|2G6Z|C Chain C, Crystal Structure Of Human Dusp5
Length = 211
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 181 ASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAE 240
A +++ E F+ + +LVH G +R+ + + +LM+++ + +A + +
Sbjct: 63 ADISSHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAF-DYIK 121
Query: 241 VRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRE 278
R + N Y + L STP P P + E
Sbjct: 122 QRRSMVSPNFGFMGQLLQYESEILPSTPNPQPPSCQGE 159
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYI--EALYTFYHE 261
++VHC+ G RTG IV M + + + + + V +N + E Y F H+
Sbjct: 221 MVVHCSAGVGRTGCFIVIDAML-ERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHD 279
Query: 262 KRLDSTPCPSTPE 274
L++ C +T E
Sbjct: 280 ALLEAVTCGNTEE 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,911,760
Number of Sequences: 62578
Number of extensions: 834692
Number of successful extensions: 1835
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1771
Number of HSP's gapped (non-prelim): 44
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)