Query 006504
Match_columns 643
No_of_seqs 395 out of 2381
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 18:32:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006504.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2131-2134//hhsearch_pdb/006504hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rtx_A MRNA-capping enzyme; gu 1.0 1 1 505.4 16.5 309 305-639 7-328 (343)
2 3kyh_C MRNA-capping enzyme sub 1.0 1 1 482.7 23.6 315 311-639 14-393 (461)
3 1p16_A GTP--RNA, mRNA capping 1.0 1 1 418.9 20.9 311 310-638 10-363 (395)
4 1ckm_A MRNA capping enzyme; nu 1.0 1 1 370.7 20.3 287 305-638 19-316 (330)
5 2c46_A MRNA capping enzyme; ph 1.0 1 1 295.4 20.5 198 80-280 22-219 (241)
6 1yn9_A BVP, polynucleotide 5'- 1.0 1 1 243.6 18.9 167 84-257 1-169 (169)
7 2cfm_A Thermostable DNA ligase 1.0 1 1 189.9 15.6 167 364-560 242-434 (561)
8 1x9n_A DNA ligase I; 5'-adenyl 1.0 1 1 188.4 15.8 174 361-560 327-532 (688)
9 2hiv_A Thermostable DNA ligase 1.0 1 1 187.7 16.5 168 364-560 273-472 (621)
10 1vs0_A Putative DNA ligase-lik 1.0 1 1 186.2 15.6 166 361-560 22-199 (310)
No 1
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=1.00 E-value=1 Score=505.40 Aligned_cols=309 Identities=31% Similarity=0.484 Sum_probs=261.3
Q ss_pred CCCCCCCCCCCCCCHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCCEEEEEEEE
Q ss_conf 2225898888734703--68999999998610467999998898985335341021444127818968057309999998
Q 006504 305 VTMTNDDVLGDEIPND--QQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLIT 382 (643)
Q Consensus 305 ~~~~~~~v~G~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~FPG~qPVSl~r~nl~~L~~~~Y~Vs~KaDG~Ryllli~ 382 (643)
+||++.+|.|++..++ .+.+||++|++||+|+ ..+|||||||||+|+||..|++++|+||||+||+|+||++.
T Consensus 7 ~f~~~~~v~gv~~v~~~~~~~~l~~~v~~~~~~~-----~~~FPGsqPVS~~r~nl~~L~~~~y~v~~K~DG~R~ll~i~ 81 (343)
T 3rtx_A 7 IFLEGITVKGVTQVTTQPKLGEVQQKCHQFCGWE-----GSGFPGAQPVSMDKQNIRLLEQKPYKVSWKADGTRYMMLID 81 (343)
T ss_dssp CSSSSSCCTTEEECCCTTHHHHHHHHHHHHTTCC-----SSSCCSEEEEECCTTGGGHHHHSCEEEEEECCCEEEEEEEC
T ss_pred EECCCCCCCCEEEECCHHHHHHHHHHHHHHHCCC-----CCCCCCCEEECCCHHHHHHHCCCCEEEEECCCCEEEEEEEE
T ss_conf 4017963487489488589999999999985899-----88888854032043108763658779999777569999997
Q ss_pred -CCEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCHHH
Q ss_conf -9979999499951003-56688767755445457987043479998418999752019999887430981146899899
Q 006504 383 -IDGCYLIDRCFNFRRV-QMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYE 460 (643)
Q Consensus 383 -~~~vyLidR~~~~~~v-~l~FP~~~~~~~~~~~~~~~TlLDGElV~d~~~~~~~~~~rylifDil~~~G~~v~~~pl~e 460 (643)
++++||+||++..+.+ +.+||...... ..+.+||||||||.++.++. ..++|++||+|+++|++++++||.+
T Consensus 82 ~~~~v~L~sR~~~~~~~~~~~FP~~~~~~----~~~~~tvLDGElV~~~~~g~--~~~~~~~FDlL~~~G~dl~~~pl~e 155 (343)
T 3rtx_A 82 GTNEVFMIDRDNSVFHVSNLEFPFRKDLR----MHLSNTLLDGEMIIDKVNGQ--AVPRYLIYDIIKFNAQPVGDCDFNI 155 (343)
T ss_dssp STTCEEEECTTCCEEEETTCCCEETTEEE----EECCSEEEEEEEEEEESSSS--EEEEEEEEEEEEBTTBCGGGSCHHH
T ss_pred CCCEEEEEECCCCEEEECCCCCCCCHHHH----CCCCCEEEEEEEEEECCCCC--EEEEEEEEEEEEECCCCCCCCCHHH
T ss_conf 59989999698983884220387603443----25777478789998669995--8369999987848993852499999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEECHHHHHHH-HHHCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 9999999831855200101112589885568898379722302415699999-985111369986148962899986789
Q 006504 461 RWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLL-KEFIPKLSHDADGLVFQGWDDPYVPRT 539 (643)
Q Consensus 461 Rl~~l~~~Ii~pr~~~~~~i~k~~~~~~~~~~~pf~v~~K~f~~~~~~~~ll-~~~~~~l~h~~DGLIF~p~~~pY~~Gt 539 (643)
|+++|+++|+.|+...++ ++.+..+.+||.|+.|+|+++++++++| .+|++.+.|++|||||||.+ ||++|+
T Consensus 156 R~~~L~~~i~~p~~~~~~------~~~~~~~~~pf~vr~K~~~~~~~~~~ll~~~~~~~l~~~~dGlIf~~~~-~Y~~G~ 228 (343)
T 3rtx_A 156 RLQCIEREIISPRHEKMK------TGLIDKTQEPFSVRPKQFFDINISRKLLEGNFAKEVSHEMDGLIFQPIG-KYKPGR 228 (343)
T ss_dssp HHHHHHHHTHHHHHHHHH------HSSCCTTTSSSEEEECCCEEGGGHHHHSCC----------CEEEEEESS-CCCCEE
T ss_pred HHHHHHHHHHHHHHHHHH------CCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCCCCC
T ss_conf 999999876558888755------0642124788189999758245589998664576347888759998774-375899
Q ss_pred CCCEEEEECCCCCEEEEEEEECCC-CCEEE-----EEEECCCCCCCCCCEEEECCCCCCCCCCC-E-EEECCCCCEEEEE
Q ss_conf 997699705986328899998079-83179-----99855931111473256338999873125-2-8828999346700
Q 006504 540 HEGLLKWKYARMNSVDFLFEVTDD-DRQLL-----YVFERGKKKLMEGSSVEFTGSFSSQLTSF-L-KQTPALLFWMPKF 611 (643)
Q Consensus 540 ~~~iLKWKp~~~nTVDF~l~~~~~-~~~~L-----~l~~~g~~~~~~~~~v~f~~~~d~~~~d~-I-~~d~~~~~W~~~r 611 (643)
+.+||||||+++|||||+|++... +.+.+ .++.+|...+|+... .+++++++|| | +|.+++++|+++|
T Consensus 229 ~~~~lKwKp~~~~tvDF~l~~~~~~~~g~~~~~~~~l~~~g~~~~f~~~~----~t~~l~~ld~~IvEC~~~~~~W~~~R 304 (343)
T 3rtx_A 229 CDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIK----VTKELKQYDNKIIECKFENNSWVFMR 304 (343)
T ss_dssp EEEEEEECCSTTCC------------------------------------------------------------------
T ss_pred CCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEEEECCEEEECCEEE----CCCCCHHCCCEEEEEEEECCEEEEEE
T ss_conf 86619995276527999999336677774443002689888500303255----05520320998999999799899989
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0000378968887543221000002599
Q 006504 612 VFYIRSPSHDAYNGIKPKMDPLVMLNGA 639 (643)
Q Consensus 612 ~~~~~R~DK~~pN~~~~v~~~l~~~~~~ 639 (643)
+|+||+.||+++||.+.|++.+.+
T Consensus 305 ----~R~DK~~pN~~~tv~~v~~SI~d~ 328 (343)
T 3rtx_A 305 ----QRIDKSFPNAYNTAMAVCNSISNP 328 (343)
T ss_dssp -------------CHHHHHHHHHHHHSC
T ss_pred ----ECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf ----728999986177999999998736
No 2
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=482.70 Aligned_cols=315 Identities=30% Similarity=0.411 Sum_probs=255.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHCCCEEEEEECCCEEEEEEEEC------
Q ss_conf 888873470368999999998610467999998898985335341021-4441278189680573099999989------
Q 006504 311 DVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNL-QLLRQRYYYATWKADGTRYMMLITI------ 383 (643)
Q Consensus 311 ~v~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~FPG~qPVSl~r~nl-~~L~~~~Y~Vs~KaDG~Ryllli~~------ 383 (643)
+++|+.++++++++||..|++||+|+. .+.+|||||||||+|+|| ..|..++|+||||+||+||||++..
T Consensus 14 ~~pG~~~~~~~~~~lr~~v~~l~~~~~---~~~~FPGsqPVS~~r~nl~~~L~~~dY~V~eK~DGiR~Ll~i~~~~~~g~ 90 (461)
T 3kyh_C 14 EIPGLIQPGNVTQDLKMMVCKLLNSPK---PTKTFPGSQPVSFQHSDVEEKLLAHDYYVCEKTDGLRVLMFIVINPVTGE 90 (461)
T ss_dssp CCSSCBCCSHHHHHHHHHHHHHTTSCG---GGSSCSSCEEEECCHHHHHHTTSSSCEEEEEEECSEEEEEEEEECTTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCEEECHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCCCC
T ss_conf 999753688899999999999977899---88868887214024766888736587799984560389999950466788
Q ss_pred CEEEEEECCCCCCCCC-CCCCCCCCC--CCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCHHH
Q ss_conf 9799994999510035-668876775--5445457987043479998418999752019999887430981146899899
Q 006504 384 DGCYLIDRCFNFRRVQ-MRFPCRNSN--EGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYE 460 (643)
Q Consensus 384 ~~vyLidR~~~~~~v~-l~FP~~~~~--~~~~~~~~~~TlLDGElV~d~~~~~~~~~~rylifDil~~~G~~v~~~pl~e 460 (643)
++||||||+++++.++ ++||..... +++....+++||||||||.++.+.++...++|++||||+++|++++++||.+
T Consensus 91 g~v~LidR~~~~~~v~~~~FP~~~~~~~~~~l~~~~~~TlLDGElV~d~~~~~~~~~~~y~~FDlL~~~G~dl~~~pl~e 170 (461)
T 3kyh_C 91 QGCFMIDRENNYYLVNGFRFPRLPQKKKEELLETLQDGTLLDGELVIQTNPMTKLQELRYLMFDCLAINGRCLTQSPTSS 170 (461)
T ss_dssp EEEEEECSSSCEEEECCCCCCCCSSCCSSGGGTCCCCSEEEEEEEEEEECTTTCCEEEEEEEEEEEEETTEECSSSBHHH
T ss_pred CEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCHHH
T ss_conf 60899968998587240228764332012345435788699989995158878865349999988868984753599999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEECHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC-CC
Q ss_conf 99999998318552001011125898855688983797223024156999999851113699861489628999867-89
Q 006504 461 RWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVP-RT 539 (643)
Q Consensus 461 Rl~~l~~~Ii~pr~~~~~~i~k~~~~~~~~~~~pf~v~~K~f~~~~~~~~ll~~~~~~l~h~~DGLIF~p~~~pY~~-Gt 539 (643)
|+++|++.|+.|+...++ .++ +....+||.|+.|+|+.+++++++|+ +++++.|++|||||+|.++||.+ ||
T Consensus 171 R~~~Le~~I~~P~~~~~~-----~~p-~~~~~~pF~V~~K~~~~~~~~~~l~~-~~~~l~~~~EGLv~k~~~spY~~Ggr 243 (461)
T 3kyh_C 171 RLAHLGKEFFKPYFDLRA-----AYP-NRCTTFPFKISMKHMDFSYQLVKVAK-SLDKLPHLSDGLIFTPVKAPYTAGGK 243 (461)
T ss_dssp HHHHHHHTTHHHHHHHHH-----HCS-TTCSCCCSEEEECCCEEGGGHHHHHH-HHTTCSSCEEEEEEEESSSBCCSSSE
T ss_pred HHHHHHHHHCCCCHHHHH-----CCC-CCCCCCCCEEEECCCHHHHHHHHHHH-HHHHCCCCCCEEEEEECCCCCCCCCC
T ss_conf 999999986143166654-----163-21246883799533041666999997-65632577875798748988758996
Q ss_pred CCCEEEEECCCCCEEEEEEEECCC--------------------C--CEEEEEEECCCC---------CC--------CC
Q ss_conf 997699705986328899998079--------------------8--317999855931---------11--------14
Q 006504 540 HEGLLKWKYARMNSVDFLFEVTDD--------------------D--RQLLYVFERGKK---------KL--------ME 580 (643)
Q Consensus 540 ~~~iLKWKp~~~nTVDF~l~~~~~--------------------~--~~~L~l~~~g~~---------~~--------~~ 580 (643)
+.+||||||+++|||||+|++... . .+.||+..+|.+ .+ ++
T Consensus 244 ~~~~lKwKp~~~nTVDF~L~i~~~~~~~~~~~~~~~~~~y~dy~~~p~~~L~v~~gg~~~~~~~~~~~~~f~~~~~~~l~ 323 (461)
T 3kyh_C 244 DSLLLKWKPEQENTVDFKLILDIPMVEDPSLPKDDRNRWYYNYDVKPVFSLYVWQGGADVNSRLKHFDQPFDRKEFEILE 323 (461)
T ss_dssp EEEEEECCCTTTCCCEEEEECCCC------------------CCSCCCCEEEEECTTCHHHHHHHHTTCSCTTTTHHHHT
T ss_pred CCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 77819987698706899998514665787655456665433434563068999717865443321123443201111023
Q ss_pred CCEEEECC---CCC--------CCCCCC-E-EE--ECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 73256338---999--------873125-2-88--289993467000000378968887543221000002599
Q 006504 581 GSSVEFTG---SFS--------SQLTSF-L-KQ--TPALLFWMPKFVFYIRSPSHDAYNGIKPKMDPLVMLNGA 639 (643)
Q Consensus 581 ~~~v~f~~---~~d--------~~~~d~-I-~~--d~~~~~W~~~r~~~~~R~DK~~pN~~~~v~~~l~~~~~~ 639 (643)
+....|.. +++ ..++|| | +| |.+++.|+|+| +|+||..||+++||.+.|++..++
T Consensus 324 ~~~~~f~~l~~t~~ew~~lk~~~~~ld~~IvEC~~d~~~~~W~~~R----~R~DK~~pN~~~tv~~vleSI~d~ 393 (461)
T 3kyh_C 324 RTYRKFAELSVSDEEWQNLKNLEQPLNGRIVECAKNQETGAWEMLR----FRDDKLNGNHTSVVQKVLESINDS 393 (461)
T ss_dssp TTEEEEEECCCCTTTHHHHHHSCCCCTTEEEEECCCTTTSSCCEEE----ECTTSSSCCCHHHHHHHHHHHHHC
T ss_pred CCCEECCEEEECHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEE----ECCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 4431211365368888887640577898799999847888089999----778989887067999999998646
No 3
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=1.00 E-value=1 Score=418.94 Aligned_cols=311 Identities=26% Similarity=0.415 Sum_probs=243.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHCCCEEEEEECCCEEEEEEEE-----C
Q ss_conf 9888873470368999999998610467999998898985335341021-444127818968057309999998-----9
Q 006504 310 DDVLGDEIPNDQQDAFRHFCYQTLKLNFGGRGNMQFPGSHPVSLNSDNL-QLLRQRYYYATWKADGTRYMMLIT-----I 383 (643)
Q Consensus 310 ~~v~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~FPG~qPVSl~r~nl-~~L~~~~Y~Vs~KaDG~Ryllli~-----~ 383 (643)
.+|+|++++++++.+||+.|+++|+|+ ..+|||+|||||+++|+ ..|...+|+||||+||+|+||++. +
T Consensus 10 ~~i~g~~~~~~~~~~l~~~v~~l~~~~-----~~~FPg~~Pvsl~~~~l~~~l~~~~~~ve~K~DG~R~ll~~~~~~~~g 84 (395)
T 1p16_A 10 PVIPGNKLDEEETKELRLMVAELLGRR-----NTGFPGSQPVSFERRHLEETLMQKDYFVCEKTDGLRCLLFLINDPDKG 84 (395)
T ss_dssp CCCSSEECCHHHHHHHHHHHHHHHTCS-----CCSCCCEEEEECCHHHHHTHHHHSCEEEEEEECSEEEEEEEEEETTTE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCC-----CCCCCCCCEECCCHHHHHHHHCCCCEEEEECCCCEEEEEEEEECCCCC
T ss_conf 999888689899999999999997799-----777898724454477899763769779999756269999995235679
Q ss_pred CEEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHH
Q ss_conf 9799994999510035-668876775544545798704347999841899975201999988743098114689989999
Q 006504 384 DGCYLIDRCFNFRRVQ-MRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERW 462 (643)
Q Consensus 384 ~~vyLidR~~~~~~v~-l~FP~~~~~~~~~~~~~~~TlLDGElV~d~~~~~~~~~~rylifDil~~~G~~v~~~pl~eRl 462 (643)
+++||+||+++++.++ .+||.......-....+.+|+||||||.++.+++ +..++|++||||+++|++++++||.+|+
T Consensus 85 ~~v~L~sR~~~~~~i~~~~FP~~~~~~~~~~~~~~~~vLDGElV~~~~~~~-~~~~~f~~FDlL~~~G~dl~~~pl~eR~ 163 (395)
T 1p16_A 85 EGVFLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENRNVS-EPVLRYVIFDALAIHGKCIIDRPLPKRL 163 (395)
T ss_dssp EEEEEEETTCCEEECCSCCCCSCTTCCSSSCCCCSSEEEEEEEEEECCSSS-CCEEEEEEEEEEEETTEECTTSCHHHHH
T ss_pred CEEEEEECCCCEEEECCCCCCCCCCCCCCHHCCCCCCEEEEEEEEECCCCC-CCEEEEEEEEEEEECCEECCCCCHHHHH
T ss_conf 879999689961770335577630024320113776004569998526888-5215999998787998383039999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEECCCEECHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 999998318552001011125898-8556889837972230241569999998511136998614896289998678999
Q 006504 463 KMLEKEVIEPRNYERHNIYQSRNP-YYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHE 541 (643)
Q Consensus 463 ~~l~~~Ii~pr~~~~~~i~k~~~~-~~~~~~~pf~v~~K~f~~~~~~~~ll~~~~~~l~h~~DGLIF~p~~~pY~~Gt~~ 541 (643)
++|++.|+.|+...++ .++ ......+||.|+.|+++++++++.+|+. ++.+.|++||||||+.++||.+|++.
T Consensus 164 ~~L~~~i~~~~~~~~~-----~~~~~~~~~~~pf~v~~~~~~~~~~~~~~~~~-~~~~~~g~EGlI~K~~ds~Y~~Gr~~ 237 (395)
T 1p16_A 164 GYITENVMKPFDNFKK-----HNPDIVNSPEFPFKVGFKTMLTSYHADDVLSK-MDKLFHASDGLIYTCAETPYVFGTDQ 237 (395)
T ss_dssp HHHHHHTHHHHHHHHH-----HCHHHHSCTTSCCEEEECCCEEGGGTHHHHTT-GGGCSSCEEEEEEEESSSCCCSEEEE
T ss_pred HHHHHHHHCCCHHHHH-----CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHH-HHHCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 9999975155676662-----17542223567627998310407879999977-77437788858998689974799864
Q ss_pred CEEEEECCCCCEEEEEEEECC----------CCC-------------EEEEEEECCCC-CCCCCCEEEECC------CCC
Q ss_conf 769970598632889999807----------983-------------17999855931-111473256338------999
Q 006504 542 GLLKWKYARMNSVDFLFEVTD----------DDR-------------QLLYVFERGKK-KLMEGSSVEFTG------SFS 591 (643)
Q Consensus 542 ~iLKWKp~~~nTVDF~l~~~~----------~~~-------------~~L~l~~~g~~-~~~~~~~v~f~~------~~d 591 (643)
.||||||++.|||||+|.+.+ .|. ..|+++.+++. ..|+. +-|++ .+.
T Consensus 238 ~wlKwK~~~~~TvDfvl~~~~~~~~~~~~~g~G~~~~~~dy~~~p~~~~l~v~~~~~~~~~f~~--~~ltd~e~~~l~~~ 315 (395)
T 1p16_A 238 TLLKWKPAEENTVDFQLEFVFNEVQDPDLDERDPTSTYLDYDAKPNLIKLRVWQGSNVHTDFAK--LDLSDDDWERLKAL 315 (395)
T ss_dssp EEEEECCGGGCCEEEEEEEECEEEECTTSCTTSTTCEEEECSSCCSEEEEEEECSTTCEEEEEE--ECCCHHHHHHHHHS
T ss_pred CEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEE--EEECHHHHHHHHHH
T ss_conf 1389844877278999997751456653335676654455565651369999848966514538--87278998776753
Q ss_pred CCCCCC-E-EEEC---CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 873125-2-8828---999346700000037896888754322100000259
Q 006504 592 SQLTSF-L-KQTP---ALLFWMPKFVFYIRSPSHDAYNGIKPKMDPLVMLNG 638 (643)
Q Consensus 592 ~~~~d~-I-~~d~---~~~~W~~~r~~~~~R~DK~~pN~~~~v~~~l~~~~~ 638 (643)
..+++| | +|-+ ..+.|+++| .|.||+.||++.|+.+.|.+.+.
T Consensus 316 ~~~~~~~IvEc~~~~~~~g~wr~~R----~R~DK~~pN~~~t~~~vl~si~~ 363 (395)
T 1p16_A 316 EQPLQGRIAECRQSTTKKGYWEMLR----FRNDKSNGNHISVVEKILVSIKD 363 (395)
T ss_dssp SSCCTTCEEEEEECSSSTTEEEEEE----ECTTCSSCCBHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEEECCCCCCCEEEE----EECCCCCCCHHHHHHHHHHHHHC
T ss_conf 5668987999994057788637999----82899985759999999999872
No 4
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=1.00 E-value=1 Score=370.67 Aligned_cols=287 Identities=18% Similarity=0.264 Sum_probs=221.6
Q ss_pred CCCCCCCCCCCCCCH-HHHHHHHHHHHH--HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEECCCEEEEEEE
Q ss_conf 222589888873470-368999999998--61046799999889898533534102144412781896805730999999
Q 006504 305 VTMTNDDVLGDEIPN-DQQDAFRHFCYQ--TLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLI 381 (643)
Q Consensus 305 ~~~~~~~v~G~~~~~-~~~~~l~~~~~~--~~~~~~~~~~~~~FPG~qPVSl~r~nl~~L~~~~Y~Vs~KaDG~Ryllli 381 (643)
.+|.+. ++|++..+ +....+.+.++. +|+|+ ..+|||+|||||++.|+..|...+|+||||+||+|+||++
T Consensus 19 ~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Fpg~~Pv~~~~~~~~~L~~~~y~ve~K~DG~R~ll~~ 92 (330)
T 1ckm_A 19 LTLNGL-QIKLHKVVGESRDDIVAKMKDLAMDDHK-----FPRLPGPNPVSIERKDFEKLKQNKYVVSEKTDGIRFMMFF 92 (330)
T ss_dssp EEETTE-EEEEEEECHHHHHHHHHHHHHHTTCCCS-----SCCCSSEEEEECCGGGHHHHHHSCEEEEEEECSEEEEEEE
T ss_pred CCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCC-----CCCCCCCCEECCCHHHHHHCCCCCEEEEECCCEEEEEEEE
T ss_conf 221785-2222017850268999999886402777-----8878998620755677964786888999882637999999
Q ss_pred E---C-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCC
Q ss_conf 8---9-97999949995100356688767755445457987043479998418999752019999887430981146899
Q 006504 382 T---I-DGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERP 457 (643)
Q Consensus 382 ~---~-~~vyLidR~~~~~~v~l~FP~~~~~~~~~~~~~~~TlLDGElV~d~~~~~~~~~~rylifDil~~~G~~v~~~p 457 (643)
. + +++||+||+++.+. ..||... ...+.+|+||||||.++.++ +++|++||+|+++|++++++|
T Consensus 93 ~~~~g~g~v~L~sR~~~~~t--~~fp~~~------~~~~~~~vLDGElv~~~~~~----~~~f~vFDlL~~~G~dl~~~p 160 (330)
T 1ckm_A 93 TRVFGFKVCTIIDRAMTVYL--LPFKNIP------RVLFQGSIFDGELCVDIVEK----KFAFVLFDAVVVSGVTVSQMD 160 (330)
T ss_dssp EEETTEEEEEEECTTCCEEE--CCCSCCC------TTGGGCEEEEEEEEEETTTT----EEEEEEEEEEEETTEECTTSC
T ss_pred EECCCCCEEEEEECCCCEEE--CCCHHHH------HCCCCCEEEEEEEEEECCCC----EEEEEEEEEEEECCCCCCCCC
T ss_conf 86379987999969899772--4571044------44478762789999976899----599999963512995665699
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEECHHHHHHHHHHCCCCCC--CCCEEEEECCCCCC
Q ss_conf 8999999999831855200101112589885568898379722302415699999985111369--98614896289998
Q 006504 458 FYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSH--DADGLVFQGWDDPY 535 (643)
Q Consensus 458 l~eRl~~l~~~Ii~pr~~~~~~i~k~~~~~~~~~~~pf~v~~K~f~~~~~~~~ll~~~~~~l~h--~~DGLIF~p~~~pY 535 (643)
|.+|+++|++.+..+. .....||.|+.|++++. .++.+|+++.+.+.| ++|||||++.++||
T Consensus 161 l~eRr~~L~~~l~~~~---------------~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~yg~EGlI~K~~dspY 224 (330)
T 1ckm_A 161 LASRFFAMKRSLKEFK---------------NVPEDPAILRYKEWIPL-EHPTIIKDHLKKANAIYHTDGLIIMSVDEPV 224 (330)
T ss_dssp HHHHHHHHHHHHTTCC---------------CCTTSSSEEEECCCEET-TCHHHHHHHHHHHHHHSCEEEEEEEESSSCC
T ss_pred HHHHHHHHHHHHHHHC---------------CCCCCCEEEEEEEEEEH-HHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 9999999999874321---------------25789749998877704-5999999789987464788659996089962
Q ss_pred CCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCC-E-EEECCCCCEEEEEEE
Q ss_conf 67899976997059863288999980798317999855931111473256338999873125-2-882899934670000
Q 006504 536 VPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTGSFSSQLTSF-L-KQTPALLFWMPKFVF 613 (643)
Q Consensus 536 ~~Gt~~~iLKWKp~~~nTVDF~l~~~~~~~~~L~l~~~g~~~~~~~~~v~f~~~~d~~~~d~-I-~~d~~~~~W~~~r~~ 613 (643)
.+|++..||||||++.+|+||++. .+.|...|+.+..| ..++|.... ...++| | +|.++.+.|+++|
T Consensus 225 ~~Gr~~~~lKwK~~~~~tvDfvi~-~g~g~~gl~~~~~~-------~~vp~~~~~-k~~~~g~IvE~~~~~G~wr~~R-- 293 (330)
T 1ckm_A 225 IYGRNFNLFKLKPGTHHTIDFIIM-SEDGTIGIFDPNLR-------KNVPVGKLD-GYYNKGSIVECGFADGTWKYIQ-- 293 (330)
T ss_dssp CCEEEEEEEEECSTTCCCEEEEEC-STTCCEEEEETTTT-------EEEECCCCS-SCCCTTCEEEEEEETTEEEEEE--
T ss_pred CCCCCCCEEEEEECCCCEEEEEEE-CCCCEEEEEECCCC-------CEEEEEEEE-HHHCCCEEEEEEEECCCEEEEE--
T ss_conf 699856729997377862899998-35883888747988-------065614653-2225986999999899508999--
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0037896888754322100000259
Q 006504 614 YIRSPSHDAYNGIKPKMDPLVMLNG 638 (643)
Q Consensus 614 ~~~R~DK~~pN~~~~v~~~l~~~~~ 638 (643)
.|.||+.||++.|+.+.+.+.+.
T Consensus 294 --~R~DK~~~n~~~t~~~v~~si~~ 316 (330)
T 1ckm_A 294 --GRSDKNQANDRLTYEKTLLNIEE 316 (330)
T ss_dssp --ECTTCSSCCBHHHHHHHHHHHHH
T ss_pred --EECCCCCCCHHHHHHHHHHHHHC
T ss_conf --91799997779999999986421
No 5
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA processing, multifunctional enzyme, nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A
Probab=1.00 E-value=1 Score=295.42 Aligned_cols=198 Identities=38% Similarity=0.759 Sum_probs=182.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf 35789999999458998884468643258888401125899999889889999999849980399994788999993111
Q 006504 80 SYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDL 159 (643)
Q Consensus 80 ~~~~~~~p~~W~~~p~~g~~I~~~flp~K~PL~~~~~~~i~~~~rf~~~~l~~~~~~~~~~I~~VIdLt~~~~~Yd~~~~ 159 (643)
+.+.+.+|.+|+.||++|+.|+++|||||+|+++.++..++.+++|++++++++++..+.+|++||||+++.++|+++.+
T Consensus 22 ~~~~~~~p~~Wl~~p~~g~~I~~rfia~~~P~~~~~~~~v~~~~r~~~~~v~~~l~~~~~~i~~VInL~~e~~~y~~~~~ 101 (241)
T 2c46_A 22 SMAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMGLLVDLTNTSRFYDRNDI 101 (241)
T ss_dssp CCTTCCCCTTCTTSCSBCCCBTTTEEEECCCCCGGGGGGSCGGGCCCHHHHHHHHHHHTCEEEEEEECSSCSCSSCTHHH
T ss_pred CCCCCCCCHHHHCCCCCCCEECCCEEEECCCCCCCHHHHCCHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHH
T ss_conf 13578998645328988898688389836976430332042765299999999999717884366650688888898999
Q ss_pred HCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 00893999974069999999889999999999999860248963999849899836999999999955999999999998
Q 006504 160 KKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFA 239 (643)
Q Consensus 160 ~~~GI~y~ki~~~d~~~~P~~e~i~~fi~~v~~fi~~~~~~~~~VlVHC~~G~nRTG~lI~aYLi~~~~~s~~eAi~~f~ 239 (643)
++.||+|+++|+.|++.+|+.+.+..|+..+.++++ ..+++.|+|||++|+||||++||||||+..+|++++|++.|+
T Consensus 102 ~~~gi~y~~~p~~D~~~~P~~~~l~~~~~~i~~~~~--~~~~~~VlVHC~aG~gRTGt~ia~yLm~~~~~s~~eAi~~vr 179 (241)
T 2c46_A 102 EKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNE--RNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFA 179 (241)
T ss_dssp HTTTCEEEECCCCCTTCCCCHHHHHHHHHHHTTC-------CEEEEEECSSSSHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 777987999752798899974999999999999998--589980898789999899999999999981999999999999
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 30999768998999999997602899999998886432345
Q 006504 240 EVRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRELD 280 (643)
Q Consensus 240 ~~Rp~~i~~~~~i~~L~~~y~~~~~~~~~~p~~P~W~~~~~ 280 (643)
++||.++++.+|+++|+++|..... ...+|+.|+|+.+.+
T Consensus 180 ~~R~~~i~~~~~l~~L~~~~~~~~~-~~~~~~~p~W~~~~~ 219 (241)
T 2c46_A 180 QARPPGIYKGDYLKELFRRYGDIEE-APPPPLLPDWCFEDD 219 (241)
T ss_dssp HHSTTCCCCHHHHHHHHHHHSCGGG-CCCCCCCCTTCCCCT
T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCHHCCCC
T ss_conf 7788988999999999999741036-778988630210588
No 6
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus}
Probab=1.00 E-value=1 Score=243.64 Aligned_cols=167 Identities=31% Similarity=0.569 Sum_probs=153.5
Q ss_pred CCCCCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHC
Q ss_conf 9999999458998884468-6432588884011258999-9988988999999984998039999478899999311100
Q 006504 84 NKLPPGWLDCPPFGQEIGG-CIIPSKVPLSEFFNDCIPP-GKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKK 161 (643)
Q Consensus 84 ~~~p~~W~~~p~~g~~I~~-~flp~K~PL~~~~~~~i~~-~~rf~~~~l~~~~~~~~~~I~~VIdLt~~~~~Yd~~~~~~ 161 (643)
+.+|++|++|+++|++|++ +||+||+|+++.++.++.. +.+|++.++++. +.+|++||||+.+.++|+++.+..
T Consensus 1 ~~~p~~w~~~~~~g~~i~~~~~i~~~~P~~~~~~~~~~~~~~~~~~~~ll~~----~~gi~~Vi~l~~~~~~~~~~~~~~ 76 (169)
T 1yn9_A 1 HMFPARWHNYLQCGQVIKDSNLICFKTPLRPELFAYVTSEEDVWTAEQIVKQ----NPSIGAIIDLTNTSKYYDGVHFLR 76 (169)
T ss_dssp -CCCTTGGGSCSBCCCCTTSSEEEECCCCCGGGGTTBCCGGGCCCHHHHHHH----CTTEEEEEECCSCSCSCCTHHHHH
T ss_pred CCCCHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHH----CCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 9897223319877777689726884473267676317872467899999852----799678998689987789899876
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 89399997406999999988999999999999986024896399984989983699999999995599999999999830
Q 006504 162 EGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEV 241 (643)
Q Consensus 162 ~GI~y~ki~~~d~~~~P~~e~i~~fi~~v~~fi~~~~~~~~~VlVHC~~G~nRTG~lI~aYLi~~~~~s~~eAi~~f~~~ 241 (643)
.|++|+++++.|+ .+|+.+.+..|+..+..|+. ..+++.|+|||++|+||||+++|+|||...+|++++|++.|+++
T Consensus 77 ~gi~~~~~~~~d~-~~p~~~~~~~~~~~~~~~~~--~~~~~~vlVHC~aG~~RTg~~va~~L~~~~~~~~~~a~~~~r~~ 153 (169)
T 1yn9_A 77 AGLLYKKIQVPGQ-TLPPESIVQEFIDTVKEFTE--KCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAIDRFEKA 153 (169)
T ss_dssp TTCEEEECCCCSS-SCCCHHHHHHHHHHHHHHHH--HSTTSEEEEECSSSSHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCC-CCCCHHHHHHHHHHHHHHHH--HCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 5987999768999-99988999999999999998--48998389889999884899999999998198999999999987
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 9997689989999999
Q 006504 242 RPPGIYKNEYIEALYT 257 (643)
Q Consensus 242 Rp~~i~~~~~i~~L~~ 257 (643)
||.++++.+|+++|++
T Consensus 154 R~~~~~~~~f~~qL~~ 169 (169)
T 1yn9_A 154 RGHKIERQNYVQDLLI 169 (169)
T ss_dssp HTSCCCCHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHC
T ss_conf 8987789899999869
No 7
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=1.00 E-value=1 Score=189.92 Aligned_cols=167 Identities=17% Similarity=0.234 Sum_probs=124.8
Q ss_pred CCEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEEEEEEECCCCC---------
Q ss_conf 78189680573099999989979999499951003566887677554454579-87043479998418999---------
Q 006504 364 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTH-HFTLLDGEMIIDKLPDS--------- 433 (643)
Q Consensus 364 ~~Y~Vs~KaDG~Ryllli~~~~vyLidR~~~~~~v~l~FP~~~~~~~~~~~~~-~~TlLDGElV~d~~~~~--------- 433 (643)
.+|+++||+||+|+++++.++++++++|++.- ++..||.... .+.+..+ .+++||||||.....+.
T Consensus 242 ~~~~~E~K~DG~R~~i~~~~g~v~l~SR~g~~--~t~~fPel~~--~~~~~l~~~~~iLDGElv~~d~~g~~~~F~~L~~ 317 (561)
T 2cfm_A 242 GEAEFEIKYDGARVQVHKDGSKIIVYSRRLEN--VTRAIPEIVE--ALKEAIIPEKAIVEGELVAIGENGRPLPFQYVLR 317 (561)
T ss_dssp SCEEEEEECCSEEEEEEEETTEEEEECTTCCB--CGGGCHHHHH--HHHHHBCSSEEEEEEEEEEBCTTSSBCCTHHHHH
T ss_pred CCEEEEEEECEEEEEEEEECCEEEEEECCCCC--CHHHHHHHHH--HHHHHCCCCCEEEEEEEEEECCCCCCCCHHHHHH
T ss_conf 86799980840989999979999999499988--4544166999--9997578766686558999748995668999998
Q ss_pred ----C--------CCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf ----7--------5201999988743098114689989999999998318552001011125898855688983797223
Q 006504 434 ----R--------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKD 501 (643)
Q Consensus 434 ----~--------~~~~rylifDil~~~G~~v~~~pl~eRl~~l~~~Ii~pr~~~~~~i~k~~~~~~~~~~~pf~v~~K~ 501 (643)
+ +..++|++||+|+++|+++++.||.+|++.|++.+... . .+...+
T Consensus 318 r~~~~~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~-~---------------------~i~~~~ 375 (561)
T 2cfm_A 318 RFRRKHNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN-E---------------------KIKVAE 375 (561)
T ss_dssp HHHCCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-S---------------------SEEECC
T ss_pred HHHCCCCHHHHCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC-C---------------------CEEEEE
T ss_conf 750465422202457559999988868884732389999999999970768-8---------------------589833
Q ss_pred CEECH---HHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC-CCCCEEEEECCCCCEEEEEEEE
Q ss_conf 02415---69999998511136998614896289998678-9997699705986328899998
Q 006504 502 FWLLS---TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYARMNSVDFLFEV 560 (643)
Q Consensus 502 f~~~~---~~~~ll~~~~~~l~h~~DGLIF~p~~~pY~~G-t~~~iLKWKp~~~nTVDF~l~~ 560 (643)
++... .+..+|+. .+.++.||||+++.+++|.+| ++.+|+|||+.. +|+||.+--
T Consensus 376 ~~~~~~~~~~~~~~~~---~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~-dt~D~vViG 434 (561)
T 2cfm_A 376 NLITKKVEEAEAFYKR---ALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPTM-ENLDLVIIG 434 (561)
T ss_dssp EEEESCHHHHHHHHHH---HHHTTCCEEEEECTTCCCCTTCEEEEEEEECSSC-CCEEEEEEE
T ss_pred EEECCCHHHHHHHHHH---HHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCC-CCEEEEEEE
T ss_conf 4981889999999999---9974995568867899788999288808983667-634289999
No 8
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=1.00 E-value=1 Score=188.38 Aligned_cols=174 Identities=16% Similarity=0.226 Sum_probs=124.5
Q ss_pred HHCCCEEEEEECCCEEEEEEEECC-EEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEEEEEEECCCCC-----
Q ss_conf 412781896805730999999899-799994999510035668876775-5445457987043479998418999-----
Q 006504 361 LRQRYYYATWKADGTRYMMLITID-GCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDS----- 433 (643)
Q Consensus 361 L~~~~Y~Vs~KaDG~Ryllli~~~-~vyLidR~~~~~~v~l~FP~~~~~-~~~~~~~~~~TlLDGElV~d~~~~~----- 433 (643)
+...+|+++||+||+|+++++..+ .++|++|++.-+ +..||..... ..+.......++||||||.-...++
T Consensus 327 ~~~~~~~~E~K~DG~R~qih~~~~g~v~l~SR~g~d~--t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g~~~~F 404 (688)
T 1x9n_A 327 FEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDN--TGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPF 404 (688)
T ss_dssp TTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCBC--TTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTCSBCCH
T ss_pred CCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCCCC--CCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCH
T ss_conf 3787077887644173899992897299990899754--55045799999975225888758868999870799870898
Q ss_pred ---------------CCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf ---------------75201999988743098114689989999999998318552001011125898855688983797
Q 006504 434 ---------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVR 498 (643)
Q Consensus 434 ---------------~~~~~rylifDil~~~G~~v~~~pl~eRl~~l~~~Ii~pr~~~~~~i~k~~~~~~~~~~~pf~v~ 498 (643)
.+..++|++||||++||+++++.||.+|++.|++.+.. .... +.
T Consensus 405 ~~L~~r~r~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~Pl~eRr~~L~~~~~~-~~~~--------------------i~ 463 (688)
T 1x9n_A 405 QVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVE-TEGE--------------------FV 463 (688)
T ss_dssp HHHTTSCSSCCCGGGCCSEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCC-BTTT--------------------EE
T ss_pred HHHHHHHHCCCCHHHCCCCEEEEEEECHHHCCCCCCCCCHHHHHHHHHHHHCC-CCCC--------------------EE
T ss_conf 99877754254134235665999994631069835569999999999996312-7984--------------------89
Q ss_pred ECCCEE---CHHHHHHHHHHCCCCCCCCCEEEEECC--CCCCCCC-CCCCEEEEECCCC----CEEEEEEEE
Q ss_conf 223024---156999999851113699861489628--9998678-9997699705986----328899998
Q 006504 499 RKDFWL---LSTVNKLLKEFIPKLSHDADGLVFQGW--DDPYVPR-THEGLLKWKYARM----NSVDFLFEV 560 (643)
Q Consensus 499 ~K~f~~---~~~~~~ll~~~~~~l~h~~DGLIF~p~--~~pY~~G-t~~~iLKWKp~~~----nTVDF~l~~ 560 (643)
..+.+. ...+..+|+. .+.++.||||+++. +++|.+| ++.+|||||+..+ +|+||.+--
T Consensus 464 ~~~~~~~~~~~~~~~~~~~---a~~~g~EGlV~K~~~~ds~Y~~GkRs~~WlK~K~~y~~~~~dt~D~vVIG 532 (688)
T 1x9n_A 464 FATSLDTKDIEQIAEFLEQ---SVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIG 532 (688)
T ss_dssp ECCEECCCCHHHHHHHHHH---HHHTSEEEEEEEESSSSCSSCTTTCSEEEEEEEHHHHHSSCEEEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHH---HHHCCCCEEEEEECCCCCCCCCCCCCCHHHEEEHHHHCCCCCCCCEEEEE
T ss_conf 9866863989999999999---98559952488605667997899807147610244421445566379999
No 9
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=1.00 E-value=1 Score=187.74 Aligned_cols=168 Identities=15% Similarity=0.212 Sum_probs=125.6
Q ss_pred CCEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEEEEEEECC-CCCC-------
Q ss_conf 78189680573099999989979999499951003566887677554454579-87043479998418-9997-------
Q 006504 364 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTH-HFTLLDGEMIIDKL-PDSR------- 434 (643)
Q Consensus 364 ~~Y~Vs~KaDG~Ryllli~~~~vyLidR~~~~~~v~l~FP~~~~~~~~~~~~~-~~TlLDGElV~d~~-~~~~------- 434 (643)
.+|++++|+||+|+++++.++.+++++|++.-+ +..||.... .+.+..+ ..++||||||.... .+..
T Consensus 273 ~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~~~--t~~fP~l~~--~~~~~l~~~~~iLDGElv~~d~~~g~~l~F~~L~ 348 (621)
T 2hiv_A 273 GNAIVDYKYDGERAQIHKKEDKIFIFSRRLENI--TSQYPDVVD--YVSKYIEGKEFIIEGEIVAIDPESGEMRPFQELM 348 (621)
T ss_dssp TCEEEEEECSSEEEEEEEETTEEEEECTTCCBC--GGGCHHHHH--HHHHHBCCSSEEEEEEEEEBCTTTCCBCCTHHHH
T ss_pred CCEEEEEEECCEEEEEEECCCEEEEECCCCCCC--HHHHHHHHH--HHHHHCCCCCEEEEEEEEEEECCCCCCCCHHHHH
T ss_conf 867999977226589998599899986899581--765046999--9997578768588589997306889758989986
Q ss_pred -------------CCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf -------------5201999988743098114689989999999998318552001011125898855688983797223
Q 006504 435 -------------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKD 501 (643)
Q Consensus 435 -------------~~~~rylifDil~~~G~~v~~~pl~eRl~~l~~~Ii~pr~~~~~~i~k~~~~~~~~~~~pf~v~~K~ 501 (643)
+..++|++||+|+++|+++++.||.+|++.|++.+... . .+...+
T Consensus 349 ~r~~~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~-~---------------------~i~~~~ 406 (621)
T 2hiv_A 349 HRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN-D---------------------YVKIAH 406 (621)
T ss_dssp HHHHCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-S---------------------SEEECC
T ss_pred HHCCCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC-C---------------------CEEEEE
T ss_conf 212455423431457659999934440897054599999999999970758-8---------------------489864
Q ss_pred CEECH---HHHHHHHHHCCCCCCCCCEEEEECC--CCCCCCC-CCCCEEEEECCCCC----EEEEEEEE
Q ss_conf 02415---6999999851113699861489628--9998678-99976997059863----28899998
Q 006504 502 FWLLS---TVNKLLKEFIPKLSHDADGLVFQGW--DDPYVPR-THEGLLKWKYARMN----SVDFLFEV 560 (643)
Q Consensus 502 f~~~~---~~~~ll~~~~~~l~h~~DGLIF~p~--~~pY~~G-t~~~iLKWKp~~~n----TVDF~l~~ 560 (643)
++... .+..+|+. .+.++.||||+++. +++|.+| ++.+|+|||+..++ |+||.+--
T Consensus 407 ~~~~~~~~~~~~~~~~---~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~~~~~dt~D~vViG 472 (621)
T 2hiv_A 407 HIQANNVEDLKSFFYR---AISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVG 472 (621)
T ss_dssp EEEESSHHHHHHHHHH---HHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCTTSSCEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHH---HHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECHHCCCCCCEEEEEEEE
T ss_conf 6981889999999999---98459925899855888986498918881899200106767606899999
No 10
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=1.00 E-value=1 Score=186.23 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=125.2
Q ss_pred HHCCCEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEEEEEEECCCCCC-----
Q ss_conf 41278189680573099999989979999499951003566887677554454579-870434799984189997-----
Q 006504 361 LRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTH-HFTLLDGEMIIDKLPDSR----- 434 (643)
Q Consensus 361 L~~~~Y~Vs~KaDG~Ryllli~~~~vyLidR~~~~~~v~l~FP~~~~~~~~~~~~~-~~TlLDGElV~d~~~~~~----- 434 (643)
+...+|++++|+||+|+++++.+++++|++|++..+ +..||..... ....+ ..++||||||....++..
T Consensus 22 ~~~~~~~~E~K~DG~R~~~~~~~g~v~l~SR~g~~~--t~~fPel~~~---~~~l~~~~~iLDGElv~~d~~g~~~F~~l 96 (310)
T 1vs0_A 22 LKASQWAFEGXWDGYRLLVEADHGAVRLRSRSGRDV--TAEYPQLRAL---AEDLADHHVVLDGEAVVLDSSGVPSFSQM 96 (310)
T ss_dssp CCTTTEEEEEECCSEEEEEEEETTEEEEEETTCCBC--GGGCGGGHHH---HHHTTTCEEEEEEEEECBCTTSCBCHHHH
T ss_pred CCCCCEEEEECCCCEEEEEEEECCEEEEECCCCCCC--HHHCHHHHHH---HHHCCCCCEEEEEEEEEECCCCCCCHHHH
T ss_conf 679988999854859999999899999990999895--3216237889---97378765797469999889997598999
Q ss_pred -----CCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEECHHHH
Q ss_conf -----520199998874309811468998999999999831855200101112589885568898379722302415699
Q 006504 435 -----RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVN 509 (643)
Q Consensus 435 -----~~~~rylifDil~~~G~~v~~~pl~eRl~~l~~~Ii~pr~~~~~~i~k~~~~~~~~~~~pf~v~~K~f~~~~~~~ 509 (643)
...++|++||+|+++|++++++||.+|++.|++.+...+ . ...+.+. ..+.
T Consensus 97 ~~r~~~~~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~~---i--------------------~~~~~~~-~~~~ 152 (310)
T 1vs0_A 97 QNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATS---L--------------------TVPELLP-GDGA 152 (310)
T ss_dssp HTCCTTSCCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHSC---C--------------------CCCCCCC-SSHH
T ss_pred HHHCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCC---E--------------------EECCCCC-HHHH
T ss_conf 74444874899999808799839613899999999998536783---8--------------------9776183-3799
Q ss_pred HHHHHHCCCCCCCCCEEEEECCCCCCCCC-CCCCEEEEECCCCCEEEEEEEE
Q ss_conf 99998511136998614896289998678-9997699705986328899998
Q 006504 510 KLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYARMNSVDFLFEV 560 (643)
Q Consensus 510 ~ll~~~~~~l~h~~DGLIF~p~~~pY~~G-t~~~iLKWKp~~~nTVDF~l~~ 560 (643)
.+|+.. +.++.||||+++.+++|.+| ++.+|+|||+. +|+||.+--
T Consensus 153 ~~~~~~---~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~--~~~D~vv~G 199 (310)
T 1vs0_A 153 QAFACS---RKHGWEGVIAKRRDSRYQPGRRCASWVKDKHW--NTQEVVIGG 199 (310)
T ss_dssp HHHHHH---HHTTCCEEEEEETTCCCCTTCEEEEEEEEESS--EEEEEEEEE
T ss_pred HHHHHH---HHCCCCEEEEECCCCCCCCCCCCHHHHCCCHH--EEEEEEEEE
T ss_conf 999999---97399647996789975899947689121002--278999999
Done!