BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006505
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 19/215 (8%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRK 116
+L G+S +P + LA+VGPSG GKS+++ +L G F++GS I + R
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153
Query: 117 VSGYVTQRDTLFPLLTVEETLMF----SAKXXXXXXXXXXXXXVKSLVKEL--GLEHVAM 170
V+Q TLF ++ E +++ S+ + + + EL G E
Sbjct: 1154 QIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFE---- 1208
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
RVGD R +SGG+++R++I ++ +PK+L+LDE TS LD+ S + + L E
Sbjct: 1209 TRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE-- 1265
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
GRT I+ H+ V + I +++NG+++ GT
Sbjct: 1266 GRTCIVIAHR--LNTVMNADCIAVVSNGTIIEKGT 1298
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 21/214 (9%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLL-------EILAGKLTPQSGSTFVNGSPIDKA 112
+L G++ + + +A+VG SG GKS+++ ++L GK+T V+ I+
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG----VDVRDINLE 488
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAK--XXXXXXXXXXXXXVKSLVKELGLEHVAM 170
RK V+Q LF T+EE + + + +K L + +
Sbjct: 489 FLRKNVAVVSQEPALFNC-TIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTL 547
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
VGD R +SGG+++R++I ++ +PK+L+LDE TS LD+ S + L A +
Sbjct: 548 --VGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--K 602
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
GRT I+ H+ ++ + I+ NG V+ G
Sbjct: 603 GRTTIIIAHR--LSTIRNADLIISCKNGQVVEVG 634
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 13/206 (6%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DKAQFRKVSG 119
LD +S K + E I+GP+GAGK+ LE++AG P SG ++G + D + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 120 YVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVR 179
+V Q +LFP + V++ L F + V ++L +EH+ D
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR----VLDTARDLKIEHLL-----DRNPL 126
Query: 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIH 239
+SGGE++RV++ ++ +PK+L+LDEP S LD + +ML V+ + TV+ H
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186
Query: 240 -QPGFRIVKMFNSILMLANGSVLHHG 264
Q RI M + I ++ +G ++ G
Sbjct: 187 DQTEARI--MADRIAVVMDGKLIQVG 210
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 117/241 (48%), Gaps = 25/241 (10%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ 113
SDG L G++ K E+ AI+G +G GKS+L + G L P SG + PID ++
Sbjct: 18 SDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSR 76
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKX---------XXXXXXXXXXXXVKSLVKELG 164
G + R+++ + + +FSA V + +K G
Sbjct: 77 ----KGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTG 132
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
+EH+ D +S G+++RV+I ++ +PKVLILDEPT+GLD +I+ +L
Sbjct: 133 IEHLK-----DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLV 187
Query: 225 VMAETRGRTVILSIHQPGFRIVKMF-NSILMLANGSVLHHGTVDLLSVS---LRMMGLQL 280
M + G T+I++ H IV ++ +++ ++ G V+ G + +R + L+L
Sbjct: 188 EMQKELGITIIIATHD--IDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRL 245
Query: 281 P 281
P
Sbjct: 246 P 246
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 108/216 (50%), Gaps = 27/216 (12%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKAQFRK 116
L V+ K E ++I+GPSG+GKS++L I+ P G +++ + +D + K
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 117 VS----GYVTQRDTLFPLLT----VEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHV 168
+ G+V Q+ L PLLT VE L+F + ++ LE +
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER----------RKRALECL 129
Query: 169 AMA----RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
MA R + + +SGG+++RV+I + ++P +++ D+PT LDS + +I+ +LK
Sbjct: 130 KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLK 189
Query: 225 VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260
+ E G+TV++ H + + I+ L +G V
Sbjct: 190 KLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEV 223
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 11/211 (5%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---FRK 116
VL G+S + K + LA+VG SG GKS+++++L P +GS F++G I + R
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKEL--GLEHVAMARVG 174
G V+Q LF ++ E + + ++ + + L RVG
Sbjct: 1108 QLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
D + +SGG+++R++I ++ P +L+LDE TS LD+ S + + L E GRT
Sbjct: 1167 DKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE--GRTC 1223
Query: 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
I+ H+ ++ + I+++ NG V HGT
Sbjct: 1224 IVIAHR--LSTIQNADLIVVIQNGKVKEHGT 1252
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 9/214 (4%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---FR 115
++L G++ K K + +A+VG SG GKS+ ++++ P G ++G I R
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGD 175
++ G V+Q LF T+ E + + + + + L H VG+
Sbjct: 464 EIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
R +SGG+++R++I ++ +PK+L+LDE TS LD+ S + L E GRT I
Sbjct: 523 -RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTI 579
Query: 236 LSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
+ H+ V+ + I G ++ G D L
Sbjct: 580 VIAHR--LSTVRNADVIAGFDGGVIVEQGNHDEL 611
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 16/226 (7%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF-----VNGSPID 110
G + +DGVS + K E +A++GPSG GK++ L +LAG P SG + VN P
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-- 71
Query: 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAM 170
++R+V G V Q L+P +TV E + F + V+ + ++L ++++
Sbjct: 72 -PKYREV-GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVE-IARKLLIDNLL- 127
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
D + +SGG+++RV++ ++ PKVL+ DEP S LD+ + + +K + +
Sbjct: 128 ----DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL 183
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMM 276
G T + H + M + I + G ++ +GT D + S + M
Sbjct: 184 GITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNM 228
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 11/211 (5%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---FRK 116
VL G+S + K + LA+VG SG GKS+++++L P +GS F++G I + R
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKEL--GLEHVAMARVG 174
G V+Q LF ++ E + + ++ + + L RVG
Sbjct: 1108 QLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
D + +SGG+++R++I ++ P +L+LDE TS LD+ S + + L E GRT
Sbjct: 1167 DKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE--GRTC 1223
Query: 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
I+ H+ ++ + I+++ NG V HGT
Sbjct: 1224 IVIAHR--LSTIQNADLIVVIQNGKVKEHGT 1252
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 9/214 (4%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---FR 115
++L G++ K K + +A+VG SG GKS+ ++++ P G ++G I R
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGD 175
++ G V+Q LF T+ E + + + + + L H VG+
Sbjct: 464 EIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
R +SGG+++R++I ++ +PK+L+LDE TS LD+ S + L E GRT I
Sbjct: 523 -RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTI 579
Query: 236 LSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
+ H+ V+ + I G ++ G D L
Sbjct: 580 VIAHR--LSTVRNADVIAGFDGGVIVEQGNHDEL 611
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 108/216 (50%), Gaps = 27/216 (12%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKAQFRK 116
L V+ K E ++I+GPSG+GKS++L I+ P G +++ + +D + K
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 117 VS----GYVTQRDTLFPLLT----VEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHV 168
+ G+V Q+ L PLLT VE L+F + ++ LE +
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER----------RKRALECL 129
Query: 169 AMA----RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
MA R + + +SGG+++RV+I + ++P +++ D+PT LDS + +I+ +LK
Sbjct: 130 KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLK 189
Query: 225 VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260
+ E G+TV++ H + + I+ L +G V
Sbjct: 190 KLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEV 223
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 10/223 (4%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
KLE G L+ ++ K K E +A++GPSG+GKS+LL +AG P SG + +
Sbjct: 5 KLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDE 64
Query: 107 SPIDK--AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELG 164
+ + + R V G V Q L+P +TV + + F + V+ + K L
Sbjct: 65 KDVTELPPKDRNV-GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-VREVAKMLH 122
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
++ ++ + +SGG+++RV+I ++ +P+VL+LDEP S LD+ L++ LK
Sbjct: 123 ID-----KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELK 177
Query: 225 VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
+ + G T + H + M + I ++ G +L GT D
Sbjct: 178 RLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPD 219
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 11/207 (5%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL V+ + + +I +VG +G+GK++LL+ILAG L +G F++GSP D RK G
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG-LLAAAGEIFLDGSPADPFLLRKNVG 84
Query: 120 YVTQRDTLFPL-LTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRV 178
YV Q + + TVEE + FS + +K +++ +GL +A A D +
Sbjct: 85 YVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKR-IKKVLELVGLSGLAAA----DPL 139
Query: 179 RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSI 238
+SGG+++R++I + D + L LDEP S LD S +I +L+ + + G+ +IL
Sbjct: 140 N-LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESL-KNEGKGIILVT 197
Query: 239 HQPGFRIVKMFNSILMLANGSVLHHGT 265
H+ + + IL ++NG++ G+
Sbjct: 198 HE--LEYLDDMDFILHISNGTIDFCGS 222
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDKAQFRK 116
L V+ K E ++I GPSG+GKS+ L I+ P G +++ + +D + K
Sbjct: 20 ALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 117 VS----GYVTQRDTLFPLLT----VEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHV 168
+ G+V Q+ L PLLT VE L+F K +K LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIF--KYRGAXSGEERRKRALECLKXAELEE- 136
Query: 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE 228
R + + +SGG+++RV+I + ++P +++ DEPT LDS + +I +LK + E
Sbjct: 137 ---RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNE 193
Query: 229 TRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260
G+TV++ H + + I+ L +G V
Sbjct: 194 EDGKTVVVVTHD--INVARFGERIIYLKDGEV 223
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 8/194 (4%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DKAQFRKVSGYVTQRDTLFPL 130
E + VGPSG GKS+LL ++AG T SG F+ + D + G V Q L+P
Sbjct: 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPH 89
Query: 131 LTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190
L+V E + F K V + + L L H+ D + + +SGG+R+RV+
Sbjct: 90 LSVAENMSFGLKLAGAKKEVINQR-VNQVAEVLQLAHLL-----DRKPKALSGGQRQRVA 143
Query: 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFN 250
IG ++ +P V +LDEP S LD+ +Q+ + + + GRT+I H + + +
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLAD 202
Query: 251 SILMLANGSVLHHG 264
I++L G V G
Sbjct: 203 KIVVLDAGRVAQVG 216
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 8/194 (4%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DKAQFRKVSGYVTQRDTLFPL 130
E + VGPSG GKS+LL ++AG T SG F+ + D + G V Q L+P
Sbjct: 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPH 89
Query: 131 LTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190
L+V E + F K V + + L L H+ D + + +SGG+R+RV+
Sbjct: 90 LSVAENMSFGLKLAGAKKEVINQR-VNQVAEVLQLAHLL-----DRKPKALSGGQRQRVA 143
Query: 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFN 250
IG ++ +P V +LDEP S LD+ +Q+ + + + GRT+I H + + +
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLAD 202
Query: 251 SILMLANGSVLHHG 264
I++L G V G
Sbjct: 203 KIVVLDAGRVAQVG 216
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 16/219 (7%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI--DKAQ 113
G + +L G+S + + EI ++GP+GAGK++ L I++ + P SG V G + + +
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 85
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARV 173
RK+ Y+ + + + E L F A S ++E+ +A +
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSS---------SEIEEMVERATEIAGL 136
Query: 174 GD---DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
G+ DRV S G R++ I ++ +P++ ILDEPTSGLD +A ++ +LK A
Sbjct: 137 GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK-QASQE 195
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
G T+++S H + + + I ++ NG+++ GTV+ L
Sbjct: 196 GLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 107/214 (50%), Gaps = 18/214 (8%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
++ L+ VS E L + G +G+GKS+LL+I+AG + P SG +G + R+
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 79
Query: 118 SGYVTQ--RDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGD 175
G Q D F +E + F+ K VK ++ +GL+ +
Sbjct: 80 IGIAFQYPEDQFFAERVFDE-VAFAVKNFYPDRDPVPL--VKKAMEFVGLDFDSFK---- 132
Query: 176 DRVRG-ISGGERRRVSIGFDVIHDPKVLILDEPTSGLD---STSALQIIDMLKVMAETRG 231
DRV +SGGE+RRV+I ++H+P +LILDEP GLD T L+I++ K T G
Sbjct: 133 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK----TLG 188
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+TVIL H ++ + +++L G + GT
Sbjct: 189 KTVILISHDIE-TVINHVDRVVVLEKGKKVFDGT 221
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 8/194 (4%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DKAQFRKVSGYVTQRDTLFPL 130
E + VGPSG GKS+LL ++AG T SG F+ + D + G V Q L+P
Sbjct: 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPH 89
Query: 131 LTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190
L+V E + F K V + + L L H+ D + + +SGG+R+RV+
Sbjct: 90 LSVAENMSFGLKLAGAKKEVINQR-VNQVAEVLQLAHLL-----DRKPKALSGGQRQRVA 143
Query: 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFN 250
IG ++ +P V +LD+P S LD+ +Q+ + + + GRT+I H + + +
Sbjct: 144 IGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLAD 202
Query: 251 SILMLANGSVLHHG 264
I++L G V G
Sbjct: 203 KIVVLDAGRVAQVG 216
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 107/214 (50%), Gaps = 18/214 (8%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKV 117
++ L+ VS E L + G +G+GKS+LL+I+AG + P SG +G + R+
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 81
Query: 118 SGYVTQ--RDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGD 175
G Q D F +E + F+ K VK ++ +GL+ +
Sbjct: 82 IGIAFQYPEDQFFAERVFDE-VAFAVKNFYPDRDPVPL--VKKAMEFVGLDFDSFK---- 134
Query: 176 DRVRG-ISGGERRRVSIGFDVIHDPKVLILDEPTSGLD---STSALQIIDMLKVMAETRG 231
DRV +SGGE+RRV+I ++H+P +LILDEP GLD T L+I++ K T G
Sbjct: 135 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK----TLG 190
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+TVIL H ++ + +++L G + GT
Sbjct: 191 KTVILISHDIE-TVINHVDRVVVLEKGKKVFDGT 223
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 35/221 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRK 116
+LD ++ K E++ IVG SG+GKS+L +++ P++G ++G + D R+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 79
Query: 117 VSGYVTQRDTLF------------PLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELG 164
G V Q + L P ++VE+ + + ++V E G
Sbjct: 80 QVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 139
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII-DML 223
G+SGG+R+R++I ++++PK+LI DE TS LD S I+ +M
Sbjct: 140 A--------------GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 185
Query: 224 KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
K+ +GRTVI+ H+ VK + I+++ G ++ G
Sbjct: 186 KI---CKGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQG 221
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 20/196 (10%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--- 111
D ++L +S +A+P I+A GPSG GKS++ +L P +G ++G PID
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXX-------XXXXXXVKSLVKELG 164
+R G+V+Q D+ T+ E L + + V+++ +L
Sbjct: 72 ENWRSQIGFVSQ-DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
E VG+ V+ ISGG+R+R++I + +PK+L+LDE T+ LDS S + L
Sbjct: 131 TE------VGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 225 VMAETRGRTVILSIHQ 240
+ +GRT ++ H+
Sbjct: 184 SL--MKGRTTLVIAHR 197
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 35/221 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRK 116
+LD ++ K E++ IVG SG+GKS+L +++ P++G ++G + D R+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77
Query: 117 VSGYVTQRDTLF------------PLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELG 164
G V Q + L P ++VE+ + + ++V E G
Sbjct: 78 QVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 137
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII-DML 223
G+SGG+R+R++I ++++PK+LI DE TS LD S I+ +M
Sbjct: 138 A--------------GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 224 KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
K+ +GRTVI+ H+ VK + I+++ G ++ G
Sbjct: 184 KI---CKGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQG 219
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 35/221 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRK 116
+LD ++ K E++ IVG SG+GKS+L +++ P++G ++G + D R+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 117 VSGYVTQRDTLF------------PLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELG 164
G V Q + L P ++VE+ + + ++V E G
Sbjct: 84 QVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 143
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII-DML 223
G+SGG+R+R++I ++++PK+LI DE TS LD S I+ +M
Sbjct: 144 A--------------GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 224 KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
K+ +GRTVI+ H+ VK + I+++ G ++ G
Sbjct: 190 KI---CKGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQG 225
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 12/214 (5%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG-----SPID 110
G VL G++ + E++ ++GPSG+GKS+ L L G ++G +
Sbjct: 14 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTN 73
Query: 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAM 170
+ R+ G V QR LFP +TV + + L+ ++GL+ A
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH 133
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
A +SGG+ +RV+I + +PK+++ DEPTS LD +++ ++K +A
Sbjct: 134 AYPD-----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA-NE 187
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
G T+++ H+ GF ++ + +L + G ++ G
Sbjct: 188 GMTMVVVTHEMGF-AREVGDRVLFMDGGYIIEEG 220
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 35/221 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRK 116
+LD ++ K E++ IVG +G+GKS+L +++ P++G ++G + D R+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 79
Query: 117 VSGYVTQRDTLF------------PLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELG 164
G V Q + L P ++VE+ + + ++V E G
Sbjct: 80 QVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 139
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII-DML 223
G+SGG+R+R++I ++++PK+LI DE TS LD S I+ +M
Sbjct: 140 A--------------GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 185
Query: 224 KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
K+ +GRTVI+ H+ VK + I+++ G ++ G
Sbjct: 186 KI---CKGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQG 221
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 35/221 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRK 116
+LD ++ K E++ IVG SG+GKS+L +++ P++G ++G + D R+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 117 VSGYVTQRDTLF------------PLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELG 164
G V Q + L P ++VE+ + + ++V E G
Sbjct: 84 QVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 143
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII-DML 223
G+SGG+R+R++I ++++PK+LI D+ TS LD S I+ +M
Sbjct: 144 A--------------GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMH 189
Query: 224 KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
K+ +GRTVI+ H+ VK + I+++ G ++ G
Sbjct: 190 KI---CKGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQG 225
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 22/236 (9%)
Query: 34 QLNDDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG 93
Q+ D H ++ LE VL G++ + E++ ++GPSG+GKS+ L L
Sbjct: 23 QMIDVHQLKKSFGSLE----------VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNL 72
Query: 94 KLTPQSGSTFVNG-----SPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXX 148
G ++G + + R+ G V QR LFP +TV + +
Sbjct: 73 LEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP 132
Query: 149 XXXXXXXVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208
L+ ++GL+ A A +SGG+ +RV+I + +PK+++ DEPT
Sbjct: 133 REKAEAKAMELLDKVGLKDKAHAYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPT 187
Query: 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
S LD +++ ++K +A G T+++ H+ GF ++ + +L + G ++ G
Sbjct: 188 SALDPEMVGEVLSVMKQLA-NEGMTMVVVTHEMGF-AREVGDRVLFMDGGYIIEEG 241
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 32/222 (14%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR---- 115
VL G++ +P E+ A+VGP+G+GKS++ +L P G ++G P+ + + R
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 116 ---------KVSGYVTQRDTLFPLL---TVEETLMFSAKXXXXXXXXXXXXXVKSLVKEL 163
+V G Q + + L T+EE + K + V E
Sbjct: 92 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEA 151
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
G + +SGG+R+ V++ +I P VLILD+ TS LD+ S LQ+ +L
Sbjct: 152 GSQ--------------LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLL 197
Query: 224 KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
E R+V+L +V+ + IL L G++ GT
Sbjct: 198 YESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGT 237
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 22/212 (10%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS- 118
+L G+S K E ++I+G SG+GKS+LL IL P G F+ G +D +++S
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 119 ------GYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMAR 172
G+V Q L P LT E ++ K KE G ++
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVP---------MLKMGKPKKEAKERGEYLLSELG 129
Query: 173 VGDDRVRG---ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
+GD R +SGGE++RV+I + ++P +L DEPT LDS + +++D+ + E
Sbjct: 130 LGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVL 261
G ++++ H+ + ++ + L + +G V+
Sbjct: 190 -GTSIVMVTHER--ELAELTHRTLEMKDGKVV 218
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 35/221 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRK 116
+LD ++ K E++ IVG SG+GKS+L +++ P++G ++G + D R+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77
Query: 117 VSGYVTQRDTLF------------PLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELG 164
G V Q + L P ++VE+ + + ++V E G
Sbjct: 78 QVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 137
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII-DML 223
G+SGG+R+R++I ++++PK+LI DE TS LD S I+ +M
Sbjct: 138 A--------------GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 224 KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
K+ +GRTVI+ + VK + I+++ G ++ G
Sbjct: 184 KI---CKGRTVIIIAAR--LSTVKNADRIIVMEKGKIVEQG 219
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 35/221 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRK 116
+LD ++ K E++ IVG SG+GKS+L +++ P++G ++G + D R+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 117 VSGYVTQRDTLF------------PLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELG 164
G V Q + L P ++VE+ + + ++V E G
Sbjct: 84 QVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 143
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII-DML 223
G+SGG+R+R++I ++++PK+LI DE TS LD S I+ +M
Sbjct: 144 A--------------GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 224 KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
K+ +GRTVI+ + VK + I+++ G ++ G
Sbjct: 190 KI---CKGRTVIIIAAR--LSTVKNADRIIVMEKGKIVEQG 225
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 13/214 (6%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPIDKA 112
+ L+ VS +I ++G SGAGKS+L+ + P GS V+G S +
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 78
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMAR 172
+ R+ G + Q L TV F VK V EL L V +
Sbjct: 79 KARRQIGMIFQHFNLLSSRTV-----FGNVALPLELDNTPKDEVKRRVTEL-LSLVGLGD 132
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
D +SGG+++RV+I + +PKVL+ DE TS LD + I+++LK + G
Sbjct: 133 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266
T++L H+ + ++ + + +++NG ++ TV
Sbjct: 193 TILLITHEMDV-VKRICDCVAVISNGELIEQDTV 225
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 15/211 (7%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFV-------NGSPIDKAQ 113
LD V+ + E I+GPSGAGK++ + I+AG P +G + NG I +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARV 173
RK+ G V Q L+P LT E + F V+ + K L + HV
Sbjct: 81 DRKI-GMVFQTWALYPNLTAFENIAFPL-TNMKMSKEEIRKRVEEVAKILDIHHVL---- 134
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
+ R +SGG+++RV++ ++ DP +L+LDEP S LD+ ++K + G T
Sbjct: 135 -NHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 234 VILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
+++ H P I + + + +L G ++ G
Sbjct: 194 LLVVSHDPA-DIFAIADRVGVLVKGKLVQVG 223
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFR 115
+VL G++ P ++ A+VGP+G+GKS++ +L P G ++G P+ D
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGL-EHVAMARVG 174
V Q LF F + ++ E G + ++ G
Sbjct: 93 TQVAAVGQEPLLF-------GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQG 145
Query: 175 DDRVRG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
D G +SGG+R+ V++ +I P++LILD+ TS LD+ + L++ +L E
Sbjct: 146 YDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEW 205
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
RTV+L HQ + + + IL L GSV GT
Sbjct: 206 ASRTVLLITHQ--LSLAERAHHILFLKEGSVCEQGT 239
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 13/214 (6%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPIDKA 112
+ L+ VS +I ++G SGAGKS+L+ + P GS V+G S +
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMAR 172
+ R+ G + Q L TV F VK V EL L V +
Sbjct: 102 KARRQIGXIFQHFNLLSSRTV-----FGNVALPLELDNTPKDEVKRRVTEL-LSLVGLGD 155
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
D +SGG+++RV+I + +PKVL+ D+ TS LD + I+++LK + G
Sbjct: 156 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266
T++L H+ + ++ + + +++NG ++ TV
Sbjct: 216 TILLITHEXDV-VKRICDCVAVISNGELIEQDTV 248
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 13/214 (6%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPIDKA 112
+ L+ VS +I ++G SGAGKS+L+ + P GS V+G S +
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMAR 172
+ R+ G + Q L TV F VK V EL L V +
Sbjct: 102 KARRQIGMIFQHFNLLSSRTV-----FGNVALPLELDNTPKDEVKRRVTEL-LSLVGLGD 155
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
D +SGG+++RV+I + +PKVL+ D+ TS LD + I+++LK + G
Sbjct: 156 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266
T++L H+ + ++ + + +++NG ++ TV
Sbjct: 216 TILLITHEMDV-VKRICDCVAVISNGELIEQDTV 248
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 26/222 (11%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPID 110
+DG R L VS P + LA+VGPSGAGKS++L +L SG ++G S +
Sbjct: 64 ADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT 122
Query: 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAM 170
+A R G V Q DT+ T+ + + + V++ + G+ M
Sbjct: 123 QASLRSHIGVVPQ-DTVLFNDTIADNIRYG-------RVTAGNDEVEAAAQAAGIHDAIM 174
Query: 171 A-------RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI-IDM 222
A +VG+ ++ +SGGE++RV+I ++ P +++LDE TS LD+++ I +
Sbjct: 175 AFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL 233
Query: 223 LKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
KV A RT I+ H+ V + IL++ +G ++ G
Sbjct: 234 AKVCAN---RTTIVVAHR--LSTVVNADQILVIKDGCIVERG 270
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 98/192 (51%), Gaps = 10/192 (5%)
Query: 76 IVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRDTLFPLLTVE 134
++GP+GAGKS LE++AG + P G +NG+ I R+ G+V Q LFP L+V
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVY 88
Query: 135 ETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194
+ + + V+ + ++LG+ H+ D + +SGGER+RV++
Sbjct: 89 RNIAYGLRNVERVERDRR---VREMAEKLGIAHLL-----DRKPARLSGGERQRVALARA 140
Query: 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254
++ P++L+LDEP S +D + +++ L+ + + IL + + + + +
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV-QREFDVPILHVTHDLIEAAMLADEVAV 199
Query: 255 LANGSVLHHGTV 266
+ NG ++ G +
Sbjct: 200 MLNGRIVEKGKL 211
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 103/215 (47%), Gaps = 21/215 (9%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL GV+ KP ++A++G +G+GKS+L+ ++ + P+ G V+ + + + + G
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 120 YVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHV-----AMARVG 174
+++ +ET++FS +V+ + + ++
Sbjct: 418 HISA--------VPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGY 469
Query: 175 DDRV----RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
D RV R SGG+++R+SI ++ PKVLILD+ TS +D + +I+D LK T+
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK--RYTK 527
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
G T + + + + IL+L G V GT
Sbjct: 528 GCTTFIITQK--IPTALLADKILVLHEGKVAGFGT 560
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 15/211 (7%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFV-------NGSPIDKAQ 113
LD V+ + E I+GPSGAGK++ + I+AG P +G + NG I +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARV 173
RK+ G V Q L+P LT E + F V+ + K L + HV
Sbjct: 81 DRKI-GMVFQTWALYPNLTAFENIAFPL-TNMKMSKEEIRKRVEEVAKILDIHHVL---- 134
Query: 174 GDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRT 233
+ R +SG +++RV++ ++ DP +L+LDEP S LD+ ++K + G T
Sbjct: 135 -NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 234 VILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
+++ H P I + + + +L G ++ G
Sbjct: 194 LLVVSHDPA-DIFAIADRVGVLVKGKLVQVG 223
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 103/212 (48%), Gaps = 16/212 (7%)
Query: 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQF-----R 115
+S + K E + ++GPSG GK++ L ++AG P G ++ + +K F R
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGD 175
++ V Q L+P +TV + + F K + V+E+ E + + + +
Sbjct: 82 DIA-MVFQSYALYPHMTVYDNIAFPLKLRKVPRQE-----IDQRVREVA-ELLGLTELLN 134
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+ R +SGG+R+RV++G ++ P+V ++DEP S LD+ +++ LK + G T I
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 236 LSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
H + M + I ++ G + G+ D
Sbjct: 195 YVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 18/216 (8%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFR 115
+VL G++ P ++ A+VGP+G+GKS++ +L P G ++G P+ D
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGL-EHVAMARVG 174
V Q LF F + ++ E G + ++ G
Sbjct: 93 TQVAAVGQEPLLF-------GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQG 145
Query: 175 DDRVRG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
D G +SGG+R+ V++ +I P++LILD TS LD+ + L++ +L E
Sbjct: 146 YDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW 205
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
RTV+L Q + + + IL L GSV GT
Sbjct: 206 ASRTVLLITQQ--LSLAERAHHILFLKEGSVCEQGT 239
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 15/184 (8%)
Query: 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQF-----R 115
+S + K E L ++GPSG GK++ L +AG P G ++ + + +K F R
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKER 84
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGD 175
V+ V Q L+P TV + + F K + V+E+ E + + + +
Sbjct: 85 DVA-XVFQSYALYPHXTVYDNIAFPLKLRKVPKQE-----IDKRVREVA-EXLGLTELLN 137
Query: 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVI 235
+ R +SGG+R+RV++G +I PKV + DEP S LD+ ++ LK + G T I
Sbjct: 138 RKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTI 197
Query: 236 LSIH 239
H
Sbjct: 198 YVTH 201
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 106/211 (50%), Gaps = 8/211 (3%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI-DKAQF 114
G R + GVS + + E++ ++GPSG+GK+++L ++AG P G ++ G + D
Sbjct: 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ 85
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVG 174
++ G V Q LF +TV + + F + V+ L++ + LE A
Sbjct: 86 KRNVGLVFQNYALFQHMTVYDNVSFGLR-EKRVPKDEMDARVRELLRFMRLESYA----- 139
Query: 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234
+ +SGG+++RV++ + P+VL+ DEP + +D+ ++ ++ + + G T
Sbjct: 140 NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS 199
Query: 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ H +++ + +L+L G+V GT
Sbjct: 200 VFVTHDQE-EALEVADRVLVLHEGNVEQFGT 229
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 24/204 (11%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRKVSGYVTQRDTLFP 129
+ A+VGPSG+GKS++L +L P SG+ ++G I + R G V+Q LF
Sbjct: 372 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 431
Query: 130 LLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMAR---------VGDDRVRG 180
++ E + + A V E+ VA R VG+ V
Sbjct: 432 C-SIAENIAYGADDPSSVTAEEIQR-----VAEVA-NAVAFIRNFPQGFNTVVGEKGVL- 483
Query: 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
+SGG+++R++I ++ +PK+L+LDE TS LD+ + + + L + + GRTV++ H+
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHR 541
Query: 241 PGFRIVKMFNSILMLANGSVLHHG 264
+K N + +L G + +G
Sbjct: 542 --LSTIKNANMVAVLDQGKITEYG 563
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 9/215 (4%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-- 111
+D +L ++ + E +A VG SG GKS+L+ ++ SG ++G I
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 409
Query: 112 -AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAM 170
R G V Q + LF TV+E ++ + + L
Sbjct: 410 TGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYD 468
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
VG+ V+ +SGG+++R+SI +++P +LILDE TS LD S I + L V+ ++
Sbjct: 469 TEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL--SK 525
Query: 231 GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
RT ++ H+ + + I+++ NG ++ GT
Sbjct: 526 DRTTLIVAHR--LSTITHADKIVVIENGHIVETGT 558
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 24/204 (11%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFRKVSGYVTQRDTLFP 129
+ A+VGPSG+GKS++L +L P SG+ ++G I + R G V+Q LF
Sbjct: 403 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 462
Query: 130 LLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMAR---------VGDDRVRG 180
++ E + + A V E+ VA R VG+ V
Sbjct: 463 C-SIAENIAYGADDPSSVTAEEIQR-----VAEVA-NAVAFIRNFPQGFNTVVGEKGVL- 514
Query: 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
+SGG+++R++I ++ +PK+L+LDE TS LD+ + + + L + + GRTV++ H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHH 572
Query: 241 PGFRIVKMFNSILMLANGSVLHHG 264
+K N + +L G + +G
Sbjct: 573 --LSTIKNANMVAVLDQGKITEYG 594
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 18/216 (8%)
Query: 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---DKAQFR 115
+VL G++ P ++ A+VGP+G+GKS++ +L P G ++G P+ D
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 116 KVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGL-EHVAMARVG 174
V Q LF F + ++ E G + ++ G
Sbjct: 93 TQVAAVGQEPLLF-------GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQG 145
Query: 175 DDRVRGISG-----GERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
D G +G G+R+ V++ +I P++LILD TS LD+ + L++ +L E
Sbjct: 146 YDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW 205
Query: 230 RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
RTV+L Q + + + IL L GSV GT
Sbjct: 206 ASRTVLLITQQ--LSLAERAHHILFLKEGSVCEQGT 239
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 19/223 (8%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDK 111
D + VL ++ KP + +A+VGP+G+GK++++ +L G V+G I +
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKS--LVKEL--GLEH 167
+ R G V Q DT+ TV+E L + S +K L G E
Sbjct: 425 SSLRSSIGIVLQ-DTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYET 483
Query: 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI-IDMLKVM 226
V + G+D +S G+R+ ++I + +PK+LILDE TS +D+ + I M K+M
Sbjct: 484 V-LTDNGED----LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269
G+T I+ H+ +K + I++L +G ++ G D L
Sbjct: 539 ---EGKTSIIIAHR--LNTIKNADLIIVLRDGEIVEMGKHDEL 576
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 33/210 (15%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI------ 109
G VL GVS +A+ ++++I+G SG+GKS+ L + P G+ VNG I
Sbjct: 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDK 76
Query: 110 -------DKAQFRKVSGYVT---QRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSL 159
DK Q R + +T Q L+ +TV E +M + K
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP--------IQVLGLSKHD 128
Query: 160 VKELGLEHVAMARVG-DDRVRG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213
+E L++ +A+VG D+R +G +SGG+++RVSI + +P VL+ DEPTS LD
Sbjct: 129 ARERALKY--LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP 186
Query: 214 TSALQIIDMLKVMAETRGRTVILSIHQPGF 243
+++ +++ +AE G+T+++ H+ GF
Sbjct: 187 ELVGEVLRIMQQLAE-EGKTMVVVTHEMGF 215
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 15/212 (7%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR-DTLFPL 130
+ILA++G +G GKS+LL++L G P G K + + G+V Q + F
Sbjct: 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQG----------KIEVYQSIGFVPQFFSSPFAY 81
Query: 131 LTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190
++ LM + V L+++ + + +SGG+R+ +
Sbjct: 82 SVLDIVLMGRSTHINTFAKPKSHDYQ---VAMQALDYLNLTHLAKREFTSLSGGQRQLIL 138
Query: 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFN 250
I + + K+++LDEPTS LD + ++ +L +A+++ TV+ + HQP ++V + N
Sbjct: 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIAN 197
Query: 251 SILMLANGSVLHHGTVDLLSVSLRMMGLQLPM 282
L+L + T ++L+ LPM
Sbjct: 198 KTLLLNKQNFKFGETRNILTSENLTALFHLPM 229
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR---K 116
+++ VS E++AI+GP+GAGKS+LL +L G L+P G + G ++ Q + +
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 117 VSGYVTQRDTL-FPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGD 175
+ Q L FP +V E + V + L L D
Sbjct: 86 TRAVMRQYSELAFP-FSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ------RD 138
Query: 176 DRVRGISGGERRRVSIG------FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229
RV +SGGE++RV + + P+ L LDEPTS LD + +L+ +
Sbjct: 139 YRV--LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196
Query: 230 RGRTVILSIHQPGFRIVKMF-NSILMLANGSVLHHGTVD 267
V +H + ++ + I++LA G ++ GT +
Sbjct: 197 EPLAVCCVLH--DLNLAALYADRIMLLAQGKLVACGTPE 233
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 102/243 (41%), Gaps = 26/243 (10%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS- 118
VL+ +S P EIL I+G SG GK++LL LAG P SG ++G I F K +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI----FSKNTN 74
Query: 119 --------GYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAM 170
GY+ Q LFP LTV + + E LE +
Sbjct: 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRI------EAMLELTGI 128
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR 230
+ + +SGG+++R ++ + DP++++LDEP S LD QI + +
Sbjct: 129 SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188
Query: 231 GRTVILSIH------QPGFRIVKMFNS-ILMLANGSVLHHGTVDLLSVSLRMMGLQLPMH 283
G++ + H Q RI M IL A+ L+ DL + G+ P
Sbjct: 189 GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAA 248
Query: 284 VNV 286
+N
Sbjct: 249 LNA 251
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 15/233 (6%)
Query: 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF 103
E+ + E G + LDGVS ++ I+GP+G+GKS+L+ ++ G L G +
Sbjct: 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 65
Query: 104 VNGSPIDKAQFRKVSGYVTQR--DTLFPL--LTVEETLMFSAKXXXXXXXXXXXXXVKSL 159
I + ++ Y R T PL +TV E L+ + K +
Sbjct: 66 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLI-GEICPGESPLNSLFYKKWI 124
Query: 160 VKELG--------LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGL 211
KE LE + ++ + D + +SGG+ + V IG ++ +PK++++DEP +G+
Sbjct: 125 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 212 DSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
A I + + + + +G T ++ H+ ++ + + ++ NG ++ G
Sbjct: 185 APGLAHDIFNHV-LELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 15/233 (6%)
Query: 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF 103
E+ + E G + LDGVS ++ I+GP+G+GKS+L+ ++ G L G +
Sbjct: 6 EILRTENIVKYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 65
Query: 104 VNGSPIDKAQFRKVSGYVTQR--DTLFPL--LTVEETLMFSAKXXXXXXXXXXXXXVKSL 159
I + ++ Y R T PL +TV E L+ + K +
Sbjct: 66 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLI-GEINPGESPLNSLFYKKWI 124
Query: 160 VKELG--------LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGL 211
KE LE + ++ + D + +SGG+ + V IG ++ +PK++++DEP +G+
Sbjct: 125 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 212 DSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
A I + + + + +G T ++ H+ ++ + + ++ NG ++ G
Sbjct: 185 APGLAHDIFNHV-LELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 10/221 (4%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
KLE G ++ ++ K E L ++GPSG GK++ L ++AG P G +
Sbjct: 13 KLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD 72
Query: 107 SPID--KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELG 164
+ + R +S V Q ++P +TV E + F K V+ + L
Sbjct: 73 RDVTYLPPKDRNIS-MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-VRWAAELLQ 130
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
+E + +SGG+R+RV++ ++ +P VL++DEP S LD+ + + +K
Sbjct: 131 IEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 185
Query: 225 VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ + T I H + M + I ++ G +L G+
Sbjct: 186 KLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 108/233 (46%), Gaps = 15/233 (6%)
Query: 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF 103
E+ + E G + LDGVS ++ I+GP+G+GKS+L+ ++ G L G +
Sbjct: 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 65
Query: 104 VNGSPIDKAQFRKVSGYVTQR--DTLFPL--LTVEETLMFSAKXXXXXXXXXXXXXVKSL 159
I + ++ Y R T PL +TV E L+ + K +
Sbjct: 66 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLI-GEINPGESPLNSLFYKKWI 124
Query: 160 VKELG--------LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGL 211
KE LE + ++ + D + +SGG+ + V IG ++ +PK++++D+P +G+
Sbjct: 125 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGV 184
Query: 212 DSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
A I + + + + +G T ++ H+ ++ + + ++ NG ++ G
Sbjct: 185 APGLAHDIFNHV-LELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 10/221 (4%)
Query: 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG 106
KLE G ++ ++ K E L ++GPSG GK++ L ++AG P G +
Sbjct: 14 KLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD 73
Query: 107 SPID--KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELG 164
+ + R +S V Q ++P +TV E + F K V+ + L
Sbjct: 74 RDVTYLPPKDRNIS-MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-VRWAAELLQ 131
Query: 165 LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
+E + +SGG+R+RV++ ++ +P VL++DEP S LD+ + + +K
Sbjct: 132 IEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 186
Query: 225 VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
+ + T I H + M + I ++ G +L G+
Sbjct: 187 KLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 32/219 (14%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF 114
+G VL ++ K + ++LA+ G +GAGK+SLL ++ G+L P G +G
Sbjct: 30 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------- 81
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARV 173
++S + +Q + P T++E ++F +S++K LE ++
Sbjct: 82 -RIS-FCSQFSWIMP-GTIKENIIFGVS--------YDEYRYRSVIKACQLEEDISKFAE 130
Query: 174 GDDRVRG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVM 226
D+ V G +SGG+R R+S+ V D + +LD P LD + +I + + K+M
Sbjct: 131 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 190
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
A + R ++ S + +K + IL+L GS +GT
Sbjct: 191 A-NKTRILVTSKMEH----LKKADKILILHEGSSYFYGT 224
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 28/212 (13%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLL 131
E++ IVGP+G GK++ +++LAG P G + + K Q+ K T++ LL
Sbjct: 369 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE----YEGTVYELL 424
Query: 132 TVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191
+ ++ ++ L+K LG+ + D V +SGGE +RV+I
Sbjct: 425 SKIDSSKLNSNFYKT-----------ELLKPLGIIDLY-----DRNVEDLSGGELQRVAI 468
Query: 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNS 251
++ D + +LDEP++ LD L + ++ + E +T ++ H ++ +
Sbjct: 469 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD--VLMIDYVSD 526
Query: 252 ILMLANGSVLHHGTVDLLSVSLRMMGLQLPMH 283
L++ G HG +L MG++ M+
Sbjct: 527 RLIVFEGEPGRHGR------ALPPMGMREGMN 552
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLT 132
++ IVGP+G GK++ ++ILAG+L P + + +A FR + F L
Sbjct: 105 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRA-FRG-----NELQNYFERLK 158
Query: 133 VEETLMFSAKXXXXXXXXXXXXXVKSLVK---ELG-----LEHVAMARVGDDRVRGISGG 184
E V+ L+K E+G ++ + + V D + +SGG
Sbjct: 159 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGG 218
Query: 185 ERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
E +RV+I ++ DEP+S LD L++ +++ +A G+ V++ H
Sbjct: 219 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA-NEGKAVLVVEHD 273
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 28/212 (13%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLL 131
E++ IVGP+G GK++ +++LAG P G + + K Q+ K T++ LL
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE----YEGTVYELL 438
Query: 132 TVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191
+ ++ ++ L+K LG+ + D V +SGGE +RV+I
Sbjct: 439 SKIDSSKLNSNFYKT-----------ELLKPLGIIDLY-----DRNVEDLSGGELQRVAI 482
Query: 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNS 251
++ D + +LDEP++ LD L + ++ + E +T ++ H ++ +
Sbjct: 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD--VLMIDYVSD 540
Query: 252 ILMLANGSVLHHGTVDLLSVSLRMMGLQLPMH 283
L++ G HG +L MG++ M+
Sbjct: 541 RLIVFEGEPGRHGR------ALPPMGMREGMN 566
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLT 132
++ IVGP+G GK++ ++ILAG+L P + + +A FR + F L
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRA-FRG-----NELQNYFERLK 172
Query: 133 VEETLMFSAKXXXXXXXXXXXXXVKSLVK---ELG-----LEHVAMARVGDDRVRGISGG 184
E V+ L+K E+G ++ + + V D + +SGG
Sbjct: 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGG 232
Query: 185 ERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
E +RV+I ++ DEP+S LD L++ +++ +A G+ V++ H
Sbjct: 233 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA-NEGKAVLVVEHD 287
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 32/219 (14%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF 114
+G VL ++ K + ++LA+ G +GAGK+SLL ++ G+L P G +G
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------- 69
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARV 173
++S + +Q + P T++E ++F +S++K LE ++
Sbjct: 70 -RIS-FCSQFSWIMP-GTIKENIIFGVS--------YDEYRYRSVIKACQLEEDISKFAE 118
Query: 174 GDDRVRG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVM 226
D+ V G +SGG+R R+S+ V D + +LD P LD + +I + + K+M
Sbjct: 119 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 178
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
A + R ++ S + +K + IL+L GS +GT
Sbjct: 179 A-NKTRILVTSKMEH----LKKADKILILHEGSSYFYGT 212
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 19/220 (8%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRK 116
L VS + +A+VG SG+GKS++ + SGS ++G + R+
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRR 417
Query: 117 VSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDD 176
V+Q LF T+ + ++A+ ++ + +E + G D
Sbjct: 418 HFALVSQNVHLFND-TIANNIAYAAEGEYTREQIE-----QAARQAHAMEFIENMPQGLD 471
Query: 177 RVRG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231
V G +SGG+R+RV+I ++ D VLILDE TS LD+ S I L + +
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL--QKN 529
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT-VDLLS 270
+TV++ H+ ++ + IL++ G ++ G DLL+
Sbjct: 530 KTVLVIAHR--LSTIEQADEILVVDEGEIIERGRHADLLA 567
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 97/202 (48%), Gaps = 11/202 (5%)
Query: 75 AIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQRDTLFPLL 131
A+VG +G+GKS++ ++L + G + G ++K R + G V Q DT+
Sbjct: 50 ALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQ-DTILFNE 107
Query: 132 TVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191
T++ +++ + L VG+ ++ +SGGER+R++I
Sbjct: 108 TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK-LSGGERQRIAI 166
Query: 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNS 251
++ DPK++I DE TS LDS + ++ + + RT+I+ H+ + S
Sbjct: 167 ARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNRTLIIIAHR--LSTISSAES 222
Query: 252 ILMLANGSVLHHGT-VDLLSVS 272
I++L G ++ GT DLL ++
Sbjct: 223 IILLNKGKIVEKGTHKDLLKLN 244
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 22/178 (12%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG--KLTPQSGSTFVNG------SPIDK 111
+L GV+ E+ A++GP+GAGKS+L +ILAG + T + G ++G SP ++
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 112 AQFRKVSGYVTQRDTLFPLLTVEE--TLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVA 169
A RK Q P +T+ L AK VK ++ L +
Sbjct: 78 A--RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY 135
Query: 170 MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227
++R ++ G SGGE++R I ++ +P +LDE SGLD ID LKV+A
Sbjct: 136 LSRYLNE---GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD-------IDALKVVA 183
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 13/197 (6%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ----SGSTFVNGSPID 110
+G + DG+S + AIVG S +GKS+++E + L P SG G +
Sbjct: 18 EGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLL 77
Query: 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVK---SLVKELGLEH 167
+ ++ + L P +++L + K V+ S + E E
Sbjct: 78 TMREEELRKIRWKEIALVPQ-AAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEK 136
Query: 168 VAMARVGDDRVRG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222
+ M R+ + V +SGG ++RV I ++ DP VLILDEPTS LD + II +
Sbjct: 137 LRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQL 196
Query: 223 LKVMAETRGRTVILSIH 239
LK + + T+I H
Sbjct: 197 LKELKKMLKITLIFVTH 213
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 28/221 (12%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G + G+ K +I+ ++G +GAGK++ L +AG + Q G NG I
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 116 KVS----GYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXX--------VKSLVKEL 163
++ V + +FP LTV E L A +K +K+L
Sbjct: 77 VINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQL 136
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
G +SGGE++ ++IG + PK+L DEP+ GL ++ +++
Sbjct: 137 G--------------GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVI 182
Query: 224 KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264
+ + + T IL + Q +K+ + +L G ++ G
Sbjct: 183 QKINQE--GTTILLVEQNALGALKVAHYGYVLETGQIVLEG 221
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLF 128
K E++ IVGP+G GK++ ++ LAG P G + + K Q+ K T++
Sbjct: 310 KKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKAD----YEGTVY 365
Query: 129 PLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188
LL+ + ++ L+K LG+ + D V +SGGE +R
Sbjct: 366 ELLSKIDASKLNSNFYKT-----------ELLKPLGIIDLY-----DREVNELSGGELQR 409
Query: 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
V+I ++ D + +LDEP++ LD L + ++ + E +T ++ H
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHD 461
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 13/179 (7%)
Query: 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQ-SGSTFVNGSPIDKAQFRKVSGYVTQ---- 123
K ++ IVGP+G GKS+ ++ILAG+L P G I + ++ Y +
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 124 --RDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGI 181
R + P K ++ +VK L LE+V + ++ +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL-----EREIQHL 159
Query: 182 SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQ 240
SGGE +RV+I ++ + DEP+S LD L ++ ++E G++V++ H
Sbjct: 160 SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHD 217
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 103/214 (48%), Gaps = 33/214 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL ++ K + ++LA+ G +GAGK+SLL ++ G+L P G +G ++S
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------RIS- 102
Query: 120 YVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARVGDDRV 178
+ +Q + P T++E ++ +S++K LE ++ D+ V
Sbjct: 103 FCSQNSWIMP-GTIKENII---------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 179 RG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRG 231
G +SGG+R R+S+ V D + +LD P LD + +I + + K+MA +
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKT 211
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
R ++ S + +K + IL+L GS +GT
Sbjct: 212 RILVTSKMEH----LKKADKILILHEGSSYFYGT 241
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 103/214 (48%), Gaps = 33/214 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL ++ K + ++LA+ G +GAGK+SLL ++ G+L P G +G ++S
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------RIS- 102
Query: 120 YVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARVGDDRV 178
+ +Q + P T++E ++ +S++K LE ++ D+ V
Sbjct: 103 FCSQNSWIMP-GTIKENII---------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 179 RG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRG 231
G +SGG+R R+S+ V D + +LD P LD + +I + + K+MA +
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKT 211
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
R ++ S + +K + IL+L GS +GT
Sbjct: 212 RILVTSKMEH----LKKADKILILHEGSSYFYGT 241
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 33/223 (14%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL ++ + E+LAI G +G+GK+SLL ++ G+L G +G +VS
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---------RVS- 102
Query: 120 YVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARVGDDRV 178
+ +Q + P T++E ++F KS+VK L+ + D+ V
Sbjct: 103 FCSQFSWIMP-GTIKENIIFGVS--------YDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 179 RG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRG 231
G +SGG+R R+S+ V D + +LD P LD + Q+ + + K+MA +
Sbjct: 154 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKT 212
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274
R ++ S + ++ + IL+L GS +GT L SLR
Sbjct: 213 RILVTSKMEH----LRKADKILILHQGSSYFYGTFSELQ-SLR 250
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 33/223 (14%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL ++ + E+LAI G +G+GK+SLL ++ G+L G +G +VS
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---------RVS- 102
Query: 120 YVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARVGDDRV 178
+ +Q + P T++E ++F KS+VK L+ + D+ V
Sbjct: 103 FCSQFSWIMP-GTIKENIIFGVS--------YDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 179 RG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRG 231
G +SGG+R R+S+ V D + +LD P LD + Q+ + + K+MA +
Sbjct: 154 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKT 212
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274
R ++ S + ++ + IL+L GS +GT L SLR
Sbjct: 213 RILVTSKMEH----LRKADKILILHQGSSYFYGTFSELQ-SLR 250
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 103/214 (48%), Gaps = 32/214 (14%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL ++ K + ++LA+ G +GAGK+SLL ++ G+L P G +G ++S
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------RIS- 102
Query: 120 YVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARVGDDRV 178
+ +Q + P T++E ++ +S++K LE ++ D+ V
Sbjct: 103 FCSQFSWIMP-GTIKENIIAGVS--------YDEYRYRSVIKACQLEEDISKFAEKDNIV 153
Query: 179 RG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRG 231
G +SGG+R R+S+ V D + +LD P LD + +I + + K+MA +
Sbjct: 154 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKT 212
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
R ++ S + +K + IL+L GS +GT
Sbjct: 213 RILVTSKMEH----LKKADKILILHEGSSYFYGT 242
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 33/219 (15%)
Query: 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF 114
+G VL ++ K + ++LA+ G +GAGK+SLL ++ G+L P G +G
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------- 69
Query: 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARV 173
++S + +Q + P T++E ++ +S++K LE ++
Sbjct: 70 -RIS-FCSQFSWIMP-GTIKENII---------GVSYDEYRYRSVIKACQLEEDISKFAE 117
Query: 174 GDDRVRG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVM 226
D+ V G +SGG+R R+S+ V D + +LD P LD + +I + + K+M
Sbjct: 118 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 177
Query: 227 AETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
A + R ++ S + +K + IL+L GS +GT
Sbjct: 178 A-NKTRILVTSKMEH----LKKADKILILHEGSSYFYGT 211
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 24/184 (13%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ--------SGSTFVNGSPI 109
+ +L G+S P E+ AI+GP+G+GKS+L LAG+ + G + SP
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 73
Query: 110 DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVA 169
D+A G + V + ++L E +A
Sbjct: 74 DRAG----EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA 129
Query: 170 MARVGDDRVR-----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
+ ++ +D + G SGGE++R I + +P++ ILDE SGLD ID LK
Sbjct: 130 LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-------IDALK 182
Query: 225 VMAE 228
V+A+
Sbjct: 183 VVAD 186
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 24/184 (13%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ--------SGSTFVNGSPI 109
+ +L G+S P E+ AI+GP+G+GKS+L LAG+ + G + SP
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92
Query: 110 DKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVA 169
D+A G + V + ++L E +A
Sbjct: 93 DRAG----EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA 148
Query: 170 MARVGDDRVR-----GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK 224
+ ++ +D + G SGGE++R I + +P++ ILDE SGLD ID LK
Sbjct: 149 LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-------IDALK 201
Query: 225 VMAE 228
V+A+
Sbjct: 202 VVAD 205
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 27/183 (14%)
Query: 65 SCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR 124
+ +AK EI+ I+GP+G GK++ IL G++T GS +P +++ Y QR
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV----TP-----EKQILSYKPQR 338
Query: 125 DTLFPLL--TVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGIS 182
+FP TV++ L ++K + + K L L + + V D +S
Sbjct: 339 --IFPNYDGTVQQYLENASK----DALSTSSWFFEEVTKRLNLHRLLESNVND-----LS 387
Query: 183 GGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK-VMAETRGRTVI----LS 237
GGE +++ I + + + +LD+P+S LD + +K V E + T I LS
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447
Query: 238 IHQ 240
IH
Sbjct: 448 IHD 450
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ-FRKVSG----------YV 121
IL ++G +G GK+++L+ILAG++ P G S + K + ++ G Y
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDP---NSKVGKDEVLKRFRGKEIYNYFKELYS 83
Query: 122 TQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGI 181
+ + + VE F K VKEL + M + + +
Sbjct: 84 NELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKEL----LNMTNLWNKDANIL 139
Query: 182 SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE-TRGRTVILSIHQ 240
SGG +R+ + ++ + V I D+P+S LD + ++M K + E + + VI+ H
Sbjct: 140 SGGGLQRLLVAASLLREADVYIFDQPSSYLD---VRERMNMAKAIRELLKNKYVIVVDHD 196
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 18/213 (8%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKV 117
L ++ K + +A+VG SG+GKS++ ++ G ++G + + A R
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ 418
Query: 118 SGYVTQR-----DTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMAR 172
V+Q DT+ + T +S + + + GL+ V
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN-GLDTV---- 473
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
+G++ V +SGG+R+R++I ++ D +LILDE TS LD+ S I L + + R
Sbjct: 474 IGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTS 532
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
VI H+ ++ + I+++ +G ++ GT
Sbjct: 533 LVI--AHR--LSTIEKADEIVVVEDGVIVERGT 561
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 33/223 (14%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL ++ + E+LAI G +G+GK+SLL ++ G+L G +G +VS
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---------RVS- 102
Query: 120 YVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARVGDDRV 178
+ +Q + P T++E ++ KS+VK L+ + D+ V
Sbjct: 103 FCSQFSWIMP-GTIKENIISGVS--------YDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 179 RG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRG 231
G +SGG+R R+S+ V D + +LD P LD + Q+ + + K+MA +
Sbjct: 154 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKT 212
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274
R ++ S + ++ + IL+L GS +GT L SLR
Sbjct: 213 RILVTSKMEH----LRKADKILILHQGSSYFYGTFSELQ-SLR 250
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 103/214 (48%), Gaps = 32/214 (14%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL ++ K + ++LA+ G +GAGK+SLL ++ G+L P G +G ++S
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------RIS- 102
Query: 120 YVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARVGDDRV 178
+ +Q + P T++E ++F +S++K LE ++ D+ V
Sbjct: 103 FCSQFSWIMP-GTIKENIIFGV--------SYDEYRYRSVIKACQLEEDISKFAEKDNIV 153
Query: 179 RG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRG 231
G +S G++ ++S+ V D + +LD P LD + +I + + K+MA +
Sbjct: 154 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKT 212
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
R ++ S + +K + IL+L GS +GT
Sbjct: 213 RILVTSKMEH----LKKADKILILHEGSSYFYGT 242
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 33/223 (14%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL ++ + E+LAI G +G+GK+SLL ++ G+L G +G +VS
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---------RVS- 102
Query: 120 YVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARVGDDRV 178
+ +Q + P T++E ++ KS+VK L+ + D+ V
Sbjct: 103 FCSQFSWIMPG-TIKENIIRGVSYDEYR--------YKSVVKACQLQQDITKFAEQDNTV 153
Query: 179 RG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRG 231
G +SGG+R R+S+ V D + +LD P LD + Q+ + + K+MA +
Sbjct: 154 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKT 212
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274
R ++ S + ++ + IL+L GS +GT L SLR
Sbjct: 213 RILVTSKMEH----LRKADKILILHQGSSYFYGTFSELQ-SLR 250
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 18/213 (8%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKV 117
L ++ K + +A+VG SG+GKS++ ++ G ++G + + A R
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418
Query: 118 SGYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVK-----ELGLEHVAMAR 172
V+Q LF TV + ++ + + + GL+ +
Sbjct: 419 VALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTI---- 473
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
+G++ V +SGG+R+R++I ++ D +LILDE TS LD+ S I L + + R
Sbjct: 474 IGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTS 532
Query: 233 TVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
VI H+ ++ + I+++ +G ++ GT
Sbjct: 533 LVI--AHR--LSTIEQADEIVVVEDGIIVERGT 561
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 34/223 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL ++ + E+LAI G +G+GK+SLL ++ G+L G +G +VS
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---------RVS- 102
Query: 120 YVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARVGDDRV 178
+ +Q + P T++E ++ KS+VK L+ + D+ V
Sbjct: 103 FCSQFSWIMPG-TIKENII---------GVSYDEYRYKSVVKACQLQQDITKFAEQDNTV 152
Query: 179 RG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRG 231
G +SGG+R R+S+ V D + +LD P LD + Q+ + + K+MA +
Sbjct: 153 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKT 211
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274
R ++ S + ++ + IL+L GS +GT L SLR
Sbjct: 212 RILVTSKMEH----LRKADKILILHQGSSYFYGTFSELQ-SLR 249
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 31/193 (16%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS-- 118
L +S + + EIL +VGP+GAGKS+LL +AG +T GS G P++ K++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 119 -GYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDR 177
Y++Q ++T F+ L+ + VA A DD+
Sbjct: 75 RAYLSQ----------QQTPPFATPVWHYLTLHQHDKTRTELLND-----VAGALALDDK 119
Query: 178 V----RGISGGERRRVSIGFDVIH-----DP--KVLILDEPTSGLDSTSALQIIDMLKVM 226
+ +SGGE +RV + V+ +P ++L+LD+P + LD + +L +
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSAL 179
Query: 227 AETRGRTVILSIH 239
++ +G +++S H
Sbjct: 180 SQ-QGLAIVMSSH 191
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 38/186 (20%)
Query: 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS-----------TFVNGSPIDKAQFRKV 117
+P ++L +VG +G GKS+ L+ILAGK P G + GS + + F K+
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSEL-QNYFTKM 159
Query: 118 ----------SGYVTQ--RDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGL 165
YV R P+ V E L + VK +K L L
Sbjct: 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPED--------VKRYIKILQL 211
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLK- 224
E+V + R + +SGGE +R +IG + + V + DEP+S LD L +++
Sbjct: 212 ENV-LKR----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266
Query: 225 VMAETR 230
++A T+
Sbjct: 267 LLAPTK 272
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 24/144 (16%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTF--VNGSPIDKAQFRKVSGYVTQRDTLFP 129
EIL ++G +G GK++L+++LAG L P G +N S + K G V Q
Sbjct: 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQ------ 432
Query: 130 LLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189
+F K V VK L ++ + D V+ +SGGE +RV
Sbjct: 433 --------LFFKKIRGQFLNPQFQTDV---VKPLRIDDII-----DQEVQHLSGGELQRV 476
Query: 190 SIGFDVIHDPKVLILDEPTSGLDS 213
+I + + ++DEP++ LDS
Sbjct: 477 AIVLALGIPADIYLIDEPSAYLDS 500
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 31/193 (16%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS-- 118
L +S + + EIL +VGP+GAGKS+LL +AG +T GS G P++ K++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 119 -GYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDR 177
Y++Q ++T F+ L+ + VA A DD+
Sbjct: 75 RAYLSQ----------QQTPPFATPVWHYLTLHQHDKTRTELLND-----VAGALALDDK 119
Query: 178 V----RGISGGERRRVSIGFDVIH-----DP--KVLILDEPTSGLDSTSALQIIDMLKVM 226
+ +SGGE +RV + V+ +P ++L+LD+P LD + +L +
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSAL 179
Query: 227 AETRGRTVILSIH 239
++ +G +++S H
Sbjct: 180 SQ-QGLAIVMSSH 191
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 19/147 (12%)
Query: 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLL 131
E + I+GP+G+GK++LL ++G L P SG+ F+NG + RK+ Y+ L
Sbjct: 31 EKVIILGPNGSGKTTLLRAISG-LLPYSGNIFING-----MEVRKIRNYIRYSTNLPEAY 84
Query: 132 TVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDRVR----GISGGERR 187
+ T+ +K L ++L LE + ++G++ +R +S G+
Sbjct: 85 EIGVTV---------NDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSV 135
Query: 188 RVSIGFDVIHDPKVLILDEPTSGLDST 214
V + P+++ LDEP +D+
Sbjct: 136 LVRTSLALASQPEIVGLDEPFENVDAA 162
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 31/193 (16%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS-- 118
L +S + + EIL +VGP+GAGKS+LL AG T GS G P++ K++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGX-TSGKGSIQFAGQPLEAWSATKLALH 74
Query: 119 -GYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDR 177
Y++Q ++T F+ L+ + VA A DD+
Sbjct: 75 RAYLSQ----------QQTPPFATPVWHYLTLHQHDKTRTELLND-----VAGALALDDK 119
Query: 178 V----RGISGGERRRVSIGFDVIH-----DP--KVLILDEPTSGLDSTSALQIIDMLKVM 226
+ +SGGE +RV + V+ +P ++L+LDEP + LD + +L +
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
Query: 227 AETRGRTVILSIH 239
++ +G ++ S H
Sbjct: 180 SQ-QGLAIVXSSH 191
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 33/214 (15%)
Query: 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119
VL ++ K + ++LA+ G +GAGK+SLL ++ G+L P G +G ++S
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------RIS- 102
Query: 120 YVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEH-VAMARVGDDRV 178
+ +Q + P T++E ++ +S++K LE ++ D+ V
Sbjct: 103 FCSQFSWIMP-GTIKENII---------GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 179 RG-----ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRG 231
G +S G++ ++S+ V D + +LD P LD + +I + + K+MA +
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKT 211
Query: 232 RTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265
R ++ S + +K + IL+L GS +GT
Sbjct: 212 RILVTSKMEH----LKKADKILILHEGSSYFYGT 241
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 31/193 (16%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS-- 118
L +S + + EIL +VGP+GAGKS+LL AG T GS G P++ K++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGX-TSGKGSIQFAGQPLEAWSATKLALH 74
Query: 119 -GYVTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMARVGDDR 177
Y++Q ++T F+ L+ + VA A DD+
Sbjct: 75 RAYLSQ----------QQTPPFATPVWHYLTLHQHDKTRTELLND-----VAGALALDDK 119
Query: 178 V----RGISGGERRRVSIGFDVIH-----DP--KVLILDEPTSGLDSTSALQIIDMLKVM 226
+ +SGGE +RV + V+ +P ++L+LDEP + LD + +L +
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
Query: 227 AETRGRTVILSIH 239
+ +G ++ S H
Sbjct: 180 CQ-QGLAIVXSSH 191
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/194 (23%), Positives = 89/194 (45%), Gaps = 14/194 (7%)
Query: 46 SKLEEAADSDGVRR-VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFV 104
SKLE S G + VL+ ++ + ++ GP+G GK++LL+ ++ L P G
Sbjct: 9 SKLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68
Query: 105 NGSPIDKAQFRKVSGYVTQRDTLFPL-LTVEETLMFSAKXXXXXXXXXXXXXVKSLVKEL 163
NG PI K + + + + + P ++VE+ L A V+ L
Sbjct: 69 NGVPITKVKGKI---FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL 125
Query: 164 GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDML 223
L+ ++G+ +S G RRV + ++ + ++ +LD+P +D S +++ +
Sbjct: 126 DLK----KKLGE-----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176
Query: 224 KVMAETRGRTVILS 237
+ + +G +I S
Sbjct: 177 LEILKEKGIVIISS 190
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 19/222 (8%)
Query: 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF--- 114
+ +L +S + + + G +GAGK++LL IL SG+ + G K +
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAE 93
Query: 115 --RKVSGYVTQRDTLFPLLTVEETLM-------FSAKXXXXXXXXXXXXXVKSLVKELGL 165
R+ G+V+ +L E ++ F + L+K +G
Sbjct: 94 TVRQHIGFVSH--SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGX 151
Query: 166 EHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
A +G +S GE++RV I + P+VLILDEP +GLD + ++ +L
Sbjct: 152 SAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDS 206
Query: 226 MAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267
++++ + + I F+ IL+L +G + G V+
Sbjct: 207 LSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVN 105
+A++GP+GAGKS+L+ +L G+L P SG + +
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
V R+RG+SGG++ ++ + P +++LDEPT+ LD S + + K + E G
Sbjct: 894 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---LGALSKALKEFEGG 950
Query: 233 TVILS 237
+I++
Sbjct: 951 VIIIT 955
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 32/175 (18%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G + +L+ + K I GP+G GKS+L+ +A NG
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA------------NG--------- 484
Query: 116 KVSGYVTQRD--TLFPLLTVEETLM-FSAKXXXXXXXXXXXXXVKSLVKELGL--EHVAM 170
+V G+ TQ + T++ ++ T S +K + E G E +AM
Sbjct: 485 QVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAM 544
Query: 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
+ +SGG + ++++ V+ + +L+LDEPT+ LD+ + +++ L
Sbjct: 545 P------ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVN 105
+A++GP+GAGKS+L+ +L G+L P SG + +
Sbjct: 696 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 727
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
V R+RG+SGG++ ++ + P +++LDEPT+ LD S + + K + E G
Sbjct: 888 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---LGALSKALKEFEGG 944
Query: 233 TVILS 237
+I++
Sbjct: 945 VIIIT 949
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G + +L+ + K I GP+G GKS+L +A NG
Sbjct: 440 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------------NG--------- 478
Query: 116 KVSGYVTQRD--TLFPLLTVEETLM-FSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMAR 172
+V G+ TQ + T++ ++ T S +K + E G +A
Sbjct: 479 QVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAX 538
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
+ +SGG + ++++ V+ + +L+LDEPT+ LD+ + +++ L
Sbjct: 539 ----PISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 587
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVN 105
+A++GP+GAGKS+L+ +L G+L P SG + +
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR 232
V R+RG+SGG++ ++ + P +++LDEPT+ LD S + + K + E G
Sbjct: 894 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---LGALSKALKEFEGG 950
Query: 233 TVILS 237
+I++
Sbjct: 951 VIIIT 955
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115
G + +L+ + K I GP+G GKS+L +A NG
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------------NG--------- 484
Query: 116 KVSGYVTQRD--TLFPLLTVEETLM-FSAKXXXXXXXXXXXXXVKSLVKELGLEHVAMAR 172
+V G+ TQ + T++ ++ T S +K + E G +A
Sbjct: 485 QVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAX 544
Query: 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKV 225
+ +SGG + ++++ V+ + +L+LDEPT+ LD+ + +++ L
Sbjct: 545 ----PISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGY 120
L+G++ ++A+VG G GKSSLL L ++ G + GS + +
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS----VAYVPQQAW 76
Query: 121 VTQRDTLFPLLTVEETLMFSAKXXXXXXXXXXXXXVKSLVKELG-LEHVAMARVGDDRVR 179
+ Q D+L E ++F + +L+ +L L +G+ V
Sbjct: 77 I-QNDSL------RENILFGCQLEEPYYRSVIQAC--ALLPDLEILPSGDRTEIGEKGVN 127
Query: 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII-DMLKVMAETRGRTVILSI 238
+SGG+++RVS+ V + + + D+P S +D+ I +++ + +T IL
Sbjct: 128 -LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 239 HQPGFRIVKMFNSILMLANGSVLHHGT 265
H + + + I++++ G + G+
Sbjct: 187 HSMSY--LPQVDVIIVMSGGKISEMGS 211
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 162 ELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK--VLILDEPTSGLDSTSALQI 219
++GLE++ ++R +SGGE +R+ + + + +LDEPT GL ++
Sbjct: 450 DVGLEYLTLSRSATT----LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERL 505
Query: 220 IDMLKVMAETRGRTVILSIHQ 240
I LK + + G TVI+ H
Sbjct: 506 IKTLKKLRDL-GNTVIVVEHD 525
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 181 ISGGERRRVSIGFDVIHDPK---VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
+SGGE +R+ + ++ + ILDEPT GL +++++L + + RG TVI+
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVI 864
Query: 238 IHQPGFRIVKMFNSILMLA 256
H ++K + I+ L
Sbjct: 865 EHN--LDVIKNADHIIDLG 881
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 181 ISGGERRRVSIGFDV---IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
+SGGE +RV + ++ + + ILDEPT+GL +++D+L + + G TV++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVI 904
Query: 238 IHQPGFRIVKMFNSILMLA 256
H ++K + I+ L
Sbjct: 905 EHN--LDVIKTADYIIDLG 921
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 181 ISGGERRRVSIGFDV---IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
+SGGE +RV + ++ + + ILDEPT+GL +++D+L + + G TV++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVI 904
Query: 238 IHQPGFRIVKMFNSILMLA 256
H ++K + I+ L
Sbjct: 905 EHN--LDVIKTADYIIDLG 921
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 160 VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK--VLILDEPTSGLDSTSAL 217
++ +GL+++ ++R +SGGE +R+ + + + +LDEP+ GL
Sbjct: 488 LQNVGLDYLTLSRSAGT----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDND 543
Query: 218 QIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266
++I LK M + G T+I+ H + + ++ + G+ +H G V
Sbjct: 544 RLIATLKSMRDL-GNTLIVVEHDEDTMLAADY--LIDIGPGAGIHGGEV 589
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 160 VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK---VLILDEPTSGLDSTSA 216
++E+GL ++ + + + +SGGE +R+ + ++ + V +LDEPT+GL
Sbjct: 714 LREVGLGYLRLGQPATE----LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADV 769
Query: 217 LQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259
++ L + + G TVI H+ ++V + +L + G+
Sbjct: 770 ERLQRQLVKLVDA-GNTVIAVEHK--MQVVAASDWVLDIGPGA 809
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 181 ISGGERRRVSIGFDV---IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
+SGGE +RV + ++ + + ILDEPT+GL +++D+L + + G TV++
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVI 602
Query: 238 IHQPGFRIVKMFNSILMLA 256
H ++K + I+ L
Sbjct: 603 EHN--LDVIKTADYIIDLG 619
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 52 ADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95
A +D +RR G+ +P +GP+G GK+ L + LA L
Sbjct: 25 AVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 68
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 52 ADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95
A +D +RR G+ +P +GP+G GK+ L + LA L
Sbjct: 28 AVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI 109
+A++G +GKSS+LE L+G P+ GS V P+
Sbjct: 73 IAVIGDQSSGKSSVLEALSGVALPR-GSGIVTRCPL 107
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 74 LAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI 109
+A++G +GKSS+LE L+G P+ GS V P+
Sbjct: 48 IAVIGDQSSGKSSVLEALSGVALPR-GSGIVTRCPL 82
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 181 ISGGERRRVSIGFDVIHDPK---VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILS 237
+SGGE +RV + ++ V ILDEPT+GL ++++++ + + +G TVI+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIVI 922
Query: 238 IHQPGFRIVKMFNSILML 255
H ++K + I+ L
Sbjct: 923 EHN--LDVIKTSDWIIDL 938
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 162 ELGLEHVAMARVGDDRVRGISGGERRRV----SIGFDVIHDPKVLILDEPTSGLDSTSAL 217
++GLE+++++R +SGGE +R+ IG ++ + +LDEP+ GL
Sbjct: 507 DVGLEYLSLSRAAAT----LSGGEAQRIRLATQIGSGLVG--VLYVLDEPSIGLHQRDNR 560
Query: 218 QIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266
++I+ L + + G T+I+ H ++ + I+ + G+ H G +
Sbjct: 561 RLIETLTRLRDL-GNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRI 606
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95
+D +RR G+ +P +GP+G GK+ L + LA L
Sbjct: 571 ADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 37 DDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95
D++ QE L + +R L+ + +P E L + GP G GK++L ++A +L
Sbjct: 12 DEYIGQERLKQ--------KLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 37 DDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95
D++ QE L + +R L+ + +P E L + GP G GK++L ++A +L
Sbjct: 12 DEYIGQERLKQ--------KLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 37 DDHHAQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL 95
D++ QE L + +R L+ + +P E L + GP G GK++L ++A +L
Sbjct: 12 DEYIGQERLKQ--------KLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID 110
+ A+VGP+G+GKS++ + + L QS + G D
Sbjct: 26 VTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGKMED 63
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 159 LVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP------KVLILDEPTSGLD 212
++K+ G+E A RG+SGGER +SI + +DE S LD
Sbjct: 267 IIKDWGIERPA---------RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLD 317
Query: 213 STSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263
+ + +I +LK + E + ++ H F + F+ L + G V++
Sbjct: 318 TENKEKIASVLKEL-ERLNKVIVFITHDREFS--EAFDRKLRITGGVVVNE 365
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 159 LVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF-----DVIHDP-KVLILDEPTSGLD 212
++K+ G+E A RG+SGGER +SI +V +DE S LD
Sbjct: 267 IIKDWGIERPA---------RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLD 317
Query: 213 STSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263
+ + +I +LK + E + ++ H F + F+ L + G V++
Sbjct: 318 TENKEKIASVLKEL-ERLNKVIVFITHDREFS--EAFDRKLRITGGVVVNE 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,146,009
Number of Sequences: 62578
Number of extensions: 663638
Number of successful extensions: 2321
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2065
Number of HSP's gapped (non-prelim): 199
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)