Query 006505
Match_columns 643
No_of_seqs 417 out of 3180
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 00:15:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 2E-109 4E-114 941.8 58.5 563 56-637 41-612 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 1E-107 2E-112 935.4 63.0 571 55-636 35-616 (617)
3 PLN03211 ABC transporter G-25; 100.0 1E-107 3E-112 935.8 62.4 565 48-633 71-658 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 1E-104 2E-109 974.0 63.3 577 55-634 71-695 (1394)
5 PLN03140 ABC transporter G fam 100.0 1E-102 2E-107 953.5 59.9 565 57-633 177-789 (1470)
6 PLN03140 ABC transporter G fam 100.0 9E-101 2E-105 936.3 62.0 562 56-636 891-1469(1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 6E-100 1E-104 931.9 60.7 571 46-634 760-1391(1394)
8 KOG0065 Pleiotropic drug resis 100.0 8.7E-96 2E-100 842.7 42.8 578 57-640 127-737 (1391)
9 KOG0065 Pleiotropic drug resis 100.0 2.9E-96 6E-101 846.7 36.3 564 56-637 802-1387(1391)
10 COG1126 GlnQ ABC-type polar am 100.0 4.4E-57 9.5E-62 434.6 23.3 231 45-290 2-236 (240)
11 COG1125 OpuBA ABC-type proline 100.0 7E-53 1.5E-57 413.0 22.5 222 45-271 1-225 (309)
12 COG1127 Ttg2A ABC-type transpo 100.0 1.2E-52 2.5E-57 409.9 22.4 224 43-271 6-235 (263)
13 COG1135 AbcC ABC-type metal io 100.0 8.8E-53 1.9E-57 424.0 21.3 218 46-270 2-230 (339)
14 COG1131 CcmA ABC-type multidru 100.0 2.5E-51 5.3E-56 428.6 25.9 223 46-275 5-230 (293)
15 COG1120 FepC ABC-type cobalami 100.0 1E-51 2.2E-56 416.2 20.7 220 45-270 2-227 (258)
16 COG3842 PotA ABC-type spermidi 100.0 7.8E-52 1.7E-56 434.2 20.2 234 45-292 5-239 (352)
17 COG3839 MalK ABC-type sugar tr 100.0 3E-51 6.5E-56 427.6 22.6 219 46-271 4-223 (338)
18 COG1116 TauB ABC-type nitrate/ 100.0 5.1E-51 1.1E-55 403.9 21.1 205 45-258 3-207 (248)
19 COG1136 SalX ABC-type antimicr 100.0 2.4E-50 5.2E-55 398.8 24.0 207 47-260 3-220 (226)
20 COG3638 ABC-type phosphate/pho 100.0 1E-50 2.2E-55 395.4 20.1 222 45-272 3-238 (258)
21 COG4555 NatA ABC-type Na+ tran 100.0 1.5E-50 3.2E-55 384.2 19.6 220 45-272 1-223 (245)
22 COG1118 CysA ABC-type sulfate/ 100.0 2.1E-50 4.6E-55 405.8 20.5 220 46-271 3-227 (345)
23 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.1E-50 1.1E-54 401.8 21.6 218 45-271 4-227 (254)
24 PRK13537 nodulation ABC transp 100.0 3E-48 6.5E-53 408.6 26.1 221 44-272 6-228 (306)
25 PRK11650 ugpC glycerol-3-phosp 100.0 3.8E-48 8.2E-53 414.9 26.2 218 46-270 4-223 (356)
26 cd03261 ABC_Org_Solvent_Resist 100.0 5.1E-48 1.1E-52 392.3 25.8 218 47-270 2-225 (235)
27 TIGR03265 PhnT2 putative 2-ami 100.0 4.5E-48 9.9E-53 413.8 26.0 220 45-271 4-224 (353)
28 PRK11432 fbpC ferric transport 100.0 5.6E-48 1.2E-52 412.6 26.1 220 44-270 5-225 (351)
29 TIGR02314 ABC_MetN D-methionin 100.0 7E-48 1.5E-52 410.0 26.3 218 46-270 2-229 (343)
30 COG2884 FtsE Predicted ATPase 100.0 2.8E-48 6.2E-53 365.8 19.9 212 46-265 2-220 (223)
31 COG1124 DppF ABC-type dipeptid 100.0 3.2E-48 7E-53 380.5 20.8 219 45-271 3-231 (252)
32 PRK09452 potA putrescine/sperm 100.0 1E-47 2.2E-52 413.4 25.9 222 42-270 11-233 (375)
33 COG1137 YhbG ABC-type (unclass 100.0 1.7E-48 3.7E-53 369.8 14.7 220 45-271 4-228 (243)
34 TIGR03258 PhnT 2-aminoethylpho 100.0 2.9E-47 6.3E-52 408.4 26.0 219 46-271 6-228 (362)
35 PRK10851 sulfate/thiosulfate t 100.0 3E-47 6.6E-52 407.5 26.1 219 46-270 3-225 (353)
36 COG3840 ThiQ ABC-type thiamine 100.0 1E-47 2.2E-52 359.2 19.0 216 46-270 2-218 (231)
37 PRK13536 nodulation factor exp 100.0 5E-47 1.1E-51 403.8 26.5 221 44-272 40-262 (340)
38 COG1117 PstB ABC-type phosphat 100.0 7.5E-48 1.6E-52 369.2 18.0 232 45-290 7-248 (253)
39 PRK11607 potG putrescine trans 100.0 6.1E-47 1.3E-51 408.0 26.4 222 43-271 17-239 (377)
40 cd03265 ABC_DrrA DrrA is the A 100.0 9.3E-47 2E-51 379.2 25.5 216 47-269 2-219 (220)
41 COG1122 CbiO ABC-type cobalt t 100.0 3.4E-47 7.5E-52 382.7 22.3 221 45-272 3-229 (235)
42 COG0411 LivG ABC-type branched 100.0 1.8E-47 3.8E-52 375.6 19.4 222 44-271 3-239 (250)
43 cd03259 ABC_Carb_Solutes_like 100.0 8.8E-47 1.9E-51 377.5 24.4 211 47-264 2-213 (213)
44 TIGR01188 drrA daunorubicin re 100.0 1.2E-46 2.7E-51 396.1 26.4 212 53-272 1-214 (302)
45 PRK11000 maltose/maltodextrin 100.0 1.4E-46 2.9E-51 405.3 26.4 218 46-270 4-222 (369)
46 COG0410 LivF ABC-type branched 100.0 8.8E-47 1.9E-51 368.0 22.0 220 44-271 2-226 (237)
47 PRK11153 metN DL-methionine tr 100.0 1.8E-46 4E-51 400.9 26.5 218 46-270 2-229 (343)
48 cd03296 ABC_CysA_sulfate_impor 100.0 2E-46 4.3E-51 381.6 25.2 218 46-269 3-224 (239)
49 TIGR01186 proV glycine betaine 100.0 2.3E-46 4.9E-51 400.6 26.8 211 53-270 1-218 (363)
50 TIGR01288 nodI ATP-binding ABC 100.0 2.2E-46 4.7E-51 394.4 26.2 219 45-271 4-224 (303)
51 cd03258 ABC_MetN_methionine_tr 100.0 2.8E-46 6.1E-51 378.9 25.7 218 46-270 2-229 (233)
52 cd03219 ABC_Mj1267_LivG_branch 100.0 2.7E-46 5.9E-51 379.7 25.0 217 47-270 2-231 (236)
53 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.9E-46 8.4E-51 374.7 25.5 212 47-267 2-219 (220)
54 cd03256 ABC_PhnC_transporter A 100.0 3.4E-46 7.3E-51 380.1 25.1 218 47-270 2-233 (241)
55 cd03301 ABC_MalK_N The N-termi 100.0 3.7E-46 8E-51 372.8 24.7 211 47-264 2-213 (213)
56 cd03218 ABC_YhbG The ABC trans 100.0 5.2E-46 1.1E-50 376.6 25.2 216 47-270 2-221 (232)
57 PRK11831 putative ABC transpor 100.0 5.7E-46 1.2E-50 384.8 26.0 221 44-270 6-232 (269)
58 PRK09493 glnQ glutamine ABC tr 100.0 6.3E-46 1.4E-50 378.1 25.6 218 46-270 2-224 (240)
59 TIGR00960 3a0501s02 Type II (G 100.0 3.5E-46 7.7E-51 373.9 22.9 207 46-260 2-216 (216)
60 PRK13637 cbiO cobalt transport 100.0 1.1E-45 2.3E-50 386.2 27.0 229 46-281 3-247 (287)
61 TIGR03522 GldA_ABC_ATP gliding 100.0 6.9E-46 1.5E-50 390.1 25.7 218 46-272 3-222 (301)
62 cd03260 ABC_PstB_phosphate_tra 100.0 4.3E-46 9.3E-51 376.1 23.2 215 47-268 2-226 (227)
63 TIGR02315 ABC_phnC phosphonate 100.0 4.6E-46 9.9E-51 379.6 23.6 218 46-269 2-233 (243)
64 cd03269 ABC_putative_ATPase Th 100.0 7.2E-46 1.6E-50 370.0 24.4 209 47-264 2-210 (210)
65 cd03263 ABC_subfamily_A The AB 100.0 9E-46 2E-50 371.9 24.8 214 47-269 2-219 (220)
66 PRK11264 putative amino-acid A 100.0 9.2E-46 2E-50 379.1 25.3 219 45-270 3-232 (250)
67 cd03266 ABC_NatA_sodium_export 100.0 8.2E-46 1.8E-50 371.7 24.2 211 46-264 2-218 (218)
68 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.2E-45 2.6E-50 376.6 25.7 217 47-270 2-224 (242)
69 PRK13643 cbiO cobalt transport 100.0 1.4E-45 3.1E-50 385.3 26.4 232 46-286 2-251 (288)
70 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.1E-46 1.7E-50 371.7 22.8 206 47-260 2-218 (218)
71 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2E-45 4.4E-50 380.7 26.4 217 47-270 26-249 (269)
72 PRK09536 btuD corrinoid ABC tr 100.0 8.1E-46 1.8E-50 401.0 24.4 219 45-270 3-227 (402)
73 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.7E-45 5.8E-50 372.6 26.4 218 46-271 2-221 (236)
74 PRK13634 cbiO cobalt transport 100.0 2E-45 4.3E-50 384.7 26.1 228 46-281 3-248 (290)
75 PRK15079 oligopeptide ABC tran 100.0 2.4E-45 5.3E-50 389.8 26.5 221 44-270 7-250 (331)
76 COG4152 ABC-type uncharacteriz 100.0 4.1E-46 8.8E-51 363.2 18.7 220 46-274 3-222 (300)
77 PRK10895 lipopolysaccharide AB 100.0 2E-45 4.2E-50 374.7 24.7 219 45-270 3-225 (241)
78 PRK13647 cbiO cobalt transport 100.0 3.4E-45 7.3E-50 380.0 26.9 229 45-281 4-239 (274)
79 cd03224 ABC_TM1139_LivF_branch 100.0 1.6E-45 3.5E-50 370.4 23.7 214 47-270 2-220 (222)
80 cd03268 ABC_BcrA_bacitracin_re 100.0 1.7E-45 3.7E-50 366.8 23.5 206 47-264 2-208 (208)
81 PRK13650 cbiO cobalt transport 100.0 4.2E-45 9.2E-50 380.2 26.6 218 45-270 4-228 (279)
82 PRK11629 lolD lipoprotein tran 100.0 3.5E-45 7.6E-50 371.0 25.2 214 45-266 5-229 (233)
83 cd03226 ABC_cobalt_CbiO_domain 100.0 1.8E-45 3.9E-50 365.9 22.1 202 48-261 2-205 (205)
84 TIGR03005 ectoine_ehuA ectoine 100.0 5.7E-45 1.2E-49 373.8 26.1 218 47-270 2-235 (252)
85 TIGR00972 3a0107s01c2 phosphat 100.0 5.2E-45 1.1E-49 373.0 25.6 216 46-270 2-231 (247)
86 PRK10619 histidine/lysine/argi 100.0 6E-45 1.3E-49 374.7 26.0 220 45-270 5-240 (257)
87 cd03257 ABC_NikE_OppD_transpor 100.0 4.7E-45 1E-49 368.4 24.7 213 46-264 2-228 (228)
88 PRK10070 glycine betaine trans 100.0 5.6E-45 1.2E-49 394.2 26.4 218 46-270 29-253 (400)
89 PRK11308 dppF dipeptide transp 100.0 7E-45 1.5E-49 385.9 26.5 222 44-271 4-244 (327)
90 TIGR01257 rim_protein retinal- 100.0 9.9E-43 2.2E-47 428.7 49.2 222 44-274 927-1152(2272)
91 PRK11248 tauB taurine transpor 100.0 6.8E-45 1.5E-49 373.8 25.4 213 46-267 2-216 (255)
92 PRK13636 cbiO cobalt transport 100.0 8.9E-45 1.9E-49 378.5 26.6 221 44-271 4-231 (283)
93 TIGR02673 FtsE cell division A 100.0 4.4E-45 9.6E-50 365.3 23.4 206 46-259 2-214 (214)
94 cd03262 ABC_HisP_GlnQ_permease 100.0 4.4E-45 9.6E-50 364.9 23.3 207 47-260 2-213 (213)
95 PRK13651 cobalt transporter AT 100.0 7.3E-45 1.6E-49 382.3 25.9 227 46-281 3-267 (305)
96 PRK13646 cbiO cobalt transport 100.0 7.6E-45 1.6E-49 379.6 25.9 218 46-271 3-235 (286)
97 PRK11614 livF leucine/isoleuci 100.0 4.9E-45 1.1E-49 370.9 23.8 216 45-270 5-225 (237)
98 PRK11124 artP arginine transpo 100.0 6.8E-45 1.5E-49 371.0 24.8 216 46-269 3-228 (242)
99 PRK13631 cbiO cobalt transport 100.0 1.1E-44 2.4E-49 383.3 27.1 231 42-281 18-278 (320)
100 PRK11300 livG leucine/isoleuci 100.0 7E-45 1.5E-49 373.7 24.9 220 45-270 5-242 (255)
101 cd03264 ABC_drug_resistance_li 100.0 6.9E-45 1.5E-49 363.2 24.1 208 47-264 2-211 (211)
102 cd03292 ABC_FtsE_transporter F 100.0 7.1E-45 1.5E-49 363.7 23.8 206 47-260 2-214 (214)
103 PRK11247 ssuB aliphatic sulfon 100.0 6.6E-45 1.4E-49 374.0 23.7 210 43-267 10-219 (257)
104 TIGR03411 urea_trans_UrtD urea 100.0 1.3E-44 2.8E-49 368.9 25.2 218 45-270 2-230 (242)
105 PRK13548 hmuV hemin importer A 100.0 1.1E-44 2.4E-49 372.9 25.0 218 46-270 3-229 (258)
106 PRK13635 cbiO cobalt transport 100.0 1.6E-44 3.6E-49 375.7 26.3 218 45-270 5-228 (279)
107 PRK11022 dppD dipeptide transp 100.0 1.5E-44 3.2E-49 383.4 26.4 223 45-270 3-242 (326)
108 cd03225 ABC_cobalt_CbiO_domain 100.0 1E-44 2.3E-49 361.8 23.6 204 48-259 2-211 (211)
109 cd03235 ABC_Metallic_Cations A 100.0 8E-45 1.7E-49 363.3 22.7 207 48-264 2-213 (213)
110 TIGR02211 LolD_lipo_ex lipopro 100.0 1.4E-44 2.9E-49 363.6 24.2 208 46-261 2-220 (221)
111 PRK10908 cell division protein 100.0 1.4E-44 3E-49 363.9 24.2 208 46-261 2-216 (222)
112 PRK13638 cbiO cobalt transport 100.0 2.2E-44 4.9E-49 373.4 26.5 217 46-270 2-224 (271)
113 PRK13641 cbiO cobalt transport 100.0 1.7E-44 3.6E-49 377.2 25.6 216 46-270 3-233 (287)
114 PRK09473 oppD oligopeptide tra 100.0 2.1E-44 4.5E-49 382.7 26.5 224 44-270 11-250 (330)
115 PRK13652 cbiO cobalt transport 100.0 3.7E-44 8.1E-49 372.8 27.7 219 45-270 3-226 (277)
116 PRK14242 phosphate transporter 100.0 2.2E-44 4.8E-49 369.6 25.6 221 44-269 5-235 (253)
117 TIGR02769 nickel_nikE nickel i 100.0 1.8E-44 3.8E-49 372.9 24.9 219 46-270 3-239 (265)
118 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.4E-44 3.1E-49 361.0 23.3 209 47-264 2-211 (211)
119 PRK10575 iron-hydroxamate tran 100.0 1.4E-44 3.1E-49 373.6 24.0 221 44-270 10-236 (265)
120 PRK13648 cbiO cobalt transport 100.0 3.4E-44 7.3E-49 371.6 26.8 230 44-281 6-244 (269)
121 PRK14247 phosphate ABC transpo 100.0 2.7E-44 5.8E-49 368.3 25.4 221 46-270 4-233 (250)
122 PRK15112 antimicrobial peptide 100.0 2.6E-44 5.7E-49 372.0 25.4 221 44-270 3-238 (267)
123 TIGR03415 ABC_choXWV_ATP choli 100.0 2.6E-44 5.6E-49 386.5 26.1 214 50-270 29-253 (382)
124 TIGR03410 urea_trans_UrtE urea 100.0 1.6E-44 3.4E-49 365.4 23.0 213 47-269 2-219 (230)
125 PRK13644 cbiO cobalt transport 100.0 2.6E-44 5.6E-49 373.3 25.1 216 46-270 2-223 (274)
126 PRK10253 iron-enterobactin tra 100.0 1.9E-44 4.2E-49 372.6 23.8 220 45-270 7-232 (265)
127 PRK14273 phosphate ABC transpo 100.0 3.9E-44 8.3E-49 368.1 25.3 222 44-270 6-237 (254)
128 PRK11231 fecE iron-dicitrate t 100.0 2.3E-44 4.9E-49 370.0 23.5 218 46-270 3-226 (255)
129 PRK14267 phosphate ABC transpo 100.0 4.2E-44 9E-49 367.6 25.4 222 45-270 4-236 (253)
130 PRK13649 cbiO cobalt transport 100.0 5.9E-44 1.3E-48 371.9 26.8 216 46-270 3-233 (280)
131 PRK10771 thiQ thiamine transpo 100.0 3.7E-44 7.9E-49 363.3 24.6 216 46-270 2-218 (232)
132 PRK09984 phosphonate/organopho 100.0 3.1E-44 6.6E-49 370.5 24.4 220 44-269 3-240 (262)
133 PRK14268 phosphate ABC transpo 100.0 4.3E-44 9.4E-49 368.6 25.5 221 44-270 11-241 (258)
134 PRK13633 cobalt transporter AT 100.0 5.5E-44 1.2E-48 372.1 26.4 219 45-271 4-233 (280)
135 PRK13632 cbiO cobalt transport 100.0 4.5E-44 9.6E-49 371.1 25.1 219 44-270 6-230 (271)
136 TIGR01978 sufC FeS assembly AT 100.0 5.1E-44 1.1E-48 364.4 25.1 217 47-270 2-233 (243)
137 PRK13639 cbiO cobalt transport 100.0 8.4E-44 1.8E-48 369.8 26.9 217 46-270 2-225 (275)
138 TIGR02142 modC_ABC molybdenum 100.0 4.8E-44 1E-48 384.0 25.7 211 50-271 4-221 (354)
139 PRK11144 modC molybdate transp 100.0 3.7E-44 8.1E-49 384.4 24.9 206 50-270 5-217 (352)
140 PRK10744 pstB phosphate transp 100.0 6.5E-44 1.4E-48 367.7 25.3 222 44-270 12-243 (260)
141 PRK10584 putative ABC transpor 100.0 6.6E-44 1.4E-48 360.4 24.9 211 44-262 5-226 (228)
142 COG4175 ProV ABC-type proline/ 100.0 9.8E-45 2.1E-49 365.0 18.4 210 54-270 37-253 (386)
143 cd03300 ABC_PotA_N PotA is an 100.0 9.2E-44 2E-48 360.5 25.7 217 47-270 2-219 (232)
144 PRK14250 phosphate ABC transpo 100.0 5E-44 1.1E-48 364.5 23.6 213 46-270 4-220 (241)
145 PRK14245 phosphate ABC transpo 100.0 7.9E-44 1.7E-48 364.9 25.2 221 45-270 3-233 (250)
146 cd03234 ABCG_White The White s 100.0 9.8E-44 2.1E-48 358.8 25.4 213 46-264 4-226 (226)
147 PRK14241 phosphate transporter 100.0 1E-43 2.2E-48 365.9 25.9 222 45-270 4-241 (258)
148 PRK14235 phosphate transporter 100.0 7.5E-44 1.6E-48 368.6 25.1 222 44-270 18-250 (267)
149 PRK15093 antimicrobial peptide 100.0 9.5E-44 2.1E-48 378.2 26.0 223 45-270 3-247 (330)
150 PRK13645 cbiO cobalt transport 100.0 8.9E-44 1.9E-48 372.2 25.3 217 46-270 7-239 (289)
151 PRK11701 phnK phosphonate C-P 100.0 1.2E-43 2.6E-48 365.3 25.9 221 44-270 5-240 (258)
152 TIGR01277 thiQ thiamine ABC tr 100.0 1.2E-43 2.6E-48 355.0 25.0 210 47-265 2-212 (213)
153 TIGR03740 galliderm_ABC gallid 100.0 9E-44 2E-48 358.3 24.3 209 47-268 2-210 (223)
154 COG0444 DppD ABC-type dipeptid 100.0 6.7E-44 1.5E-48 364.6 23.6 222 46-270 2-242 (316)
155 PRK14274 phosphate ABC transpo 100.0 1E-43 2.2E-48 366.0 25.2 225 41-270 8-242 (259)
156 TIGR00968 3a0106s01 sulfate AB 100.0 1.4E-43 2.9E-48 360.4 25.6 217 47-270 2-219 (237)
157 TIGR03873 F420-0_ABC_ATP propo 100.0 9.3E-44 2E-48 365.7 24.5 216 47-269 3-224 (256)
158 PRK14256 phosphate ABC transpo 100.0 1.4E-43 3E-48 363.5 25.7 221 46-270 5-235 (252)
159 PRK13640 cbiO cobalt transport 100.0 1.7E-43 3.7E-48 368.7 26.7 219 45-271 5-232 (282)
160 cd03297 ABC_ModC_molybdenum_tr 100.0 1.2E-43 2.7E-48 355.0 24.5 203 50-264 5-214 (214)
161 cd03299 ABC_ModC_like Archeal 100.0 2.1E-43 4.5E-48 358.6 26.3 216 47-270 2-218 (235)
162 PRK14269 phosphate ABC transpo 100.0 1.6E-43 3.4E-48 361.9 25.6 220 46-270 3-229 (246)
163 PRK14239 phosphate transporter 100.0 1.7E-43 3.7E-48 362.8 25.7 221 45-270 5-235 (252)
164 COG4598 HisP ABC-type histidin 100.0 1.4E-44 3E-49 337.1 15.9 219 45-270 6-240 (256)
165 PRK14270 phosphate ABC transpo 100.0 1.8E-43 3.8E-48 362.5 25.5 222 44-270 3-234 (251)
166 PRK14262 phosphate ABC transpo 100.0 2.4E-43 5.2E-48 361.3 25.3 221 45-270 3-233 (250)
167 cd03267 ABC_NatA_like Similar 100.0 3E-43 6.5E-48 357.6 25.3 205 53-264 29-236 (236)
168 PRK14248 phosphate ABC transpo 100.0 2.8E-43 6E-48 364.6 25.4 224 42-270 18-251 (268)
169 PRK13547 hmuV hemin importer A 100.0 1.8E-43 3.9E-48 366.3 23.9 218 46-269 2-242 (272)
170 PRK14237 phosphate transporter 100.0 3.1E-43 6.8E-48 364.0 25.5 223 43-270 18-250 (267)
171 PRK14240 phosphate transporter 100.0 4.1E-43 8.9E-48 359.6 25.8 220 46-270 4-233 (250)
172 PRK13642 cbiO cobalt transport 100.0 5.3E-43 1.2E-47 364.1 26.5 218 45-270 4-228 (277)
173 PRK14272 phosphate ABC transpo 100.0 4.8E-43 1E-47 359.4 25.7 222 45-270 4-235 (252)
174 PRK14258 phosphate ABC transpo 100.0 5E-43 1.1E-47 361.3 26.0 223 45-270 7-244 (261)
175 PRK14271 phosphate ABC transpo 100.0 5.3E-43 1.1E-47 363.8 26.2 225 41-270 17-250 (276)
176 TIGR01184 ntrCD nitrate transp 100.0 3.1E-43 6.8E-48 356.1 23.9 200 61-268 1-201 (230)
177 PRK14253 phosphate ABC transpo 100.0 4.6E-43 9.9E-48 359.0 25.0 219 46-269 4-231 (249)
178 PRK14249 phosphate ABC transpo 100.0 6.5E-43 1.4E-47 358.4 25.4 221 45-270 4-234 (251)
179 PRK14244 phosphate ABC transpo 100.0 5.6E-43 1.2E-47 358.9 24.8 219 47-270 7-236 (251)
180 TIGR02323 CP_lyasePhnK phospho 100.0 6.1E-43 1.3E-47 358.9 25.1 220 45-270 3-237 (253)
181 PRK14236 phosphate transporter 100.0 7.4E-43 1.6E-47 362.2 25.8 224 42-270 22-255 (272)
182 PRK14251 phosphate ABC transpo 100.0 7.1E-43 1.5E-47 358.0 25.3 221 45-270 4-234 (251)
183 TIGR02982 heterocyst_DevA ABC 100.0 4.9E-43 1.1E-47 352.3 23.6 208 46-260 2-219 (220)
184 PRK14259 phosphate ABC transpo 100.0 4.9E-43 1.1E-47 362.9 24.2 221 44-271 12-253 (269)
185 PRK10419 nikE nickel transport 100.0 7.3E-43 1.6E-47 361.4 25.5 220 45-270 3-240 (268)
186 COG4525 TauB ABC-type taurine 100.0 3E-43 6.5E-48 332.4 20.4 218 46-272 4-225 (259)
187 PRK14261 phosphate ABC transpo 100.0 8E-43 1.7E-47 358.1 25.0 222 44-270 5-236 (253)
188 COG4559 ABC-type hemin transpo 100.0 2.2E-43 4.9E-48 337.7 19.0 218 45-270 1-229 (259)
189 TIGR03608 L_ocin_972_ABC putat 100.0 7.4E-43 1.6E-47 347.1 23.6 199 48-255 1-206 (206)
190 TIGR02770 nickel_nikD nickel i 100.0 9.4E-43 2E-47 352.6 24.8 207 60-270 1-214 (230)
191 PRK14246 phosphate ABC transpo 100.0 1.5E-42 3.3E-47 356.8 26.6 226 41-270 6-240 (257)
192 PRK14255 phosphate ABC transpo 100.0 1.3E-42 2.8E-47 356.3 25.8 222 44-270 4-235 (252)
193 PRK13549 xylose transporter AT 100.0 3E-43 6.5E-48 395.6 23.1 219 44-269 4-230 (506)
194 PRK10762 D-ribose transporter 100.0 3E-43 6.4E-48 395.3 22.9 219 44-269 3-228 (501)
195 PRK14275 phosphate ABC transpo 100.0 1.3E-42 2.8E-47 362.8 25.9 224 42-270 36-269 (286)
196 PRK14260 phosphate ABC transpo 100.0 1.1E-42 2.4E-47 358.3 24.9 221 45-270 7-242 (259)
197 PRK14238 phosphate transporter 100.0 1.2E-42 2.6E-47 360.3 25.2 222 44-270 23-254 (271)
198 PRK10418 nikD nickel transport 100.0 1.5E-42 3.3E-47 356.3 25.2 219 45-270 4-229 (254)
199 PRK09700 D-allose transporter 100.0 5.5E-43 1.2E-47 394.0 23.3 219 44-269 4-232 (510)
200 COG1123 ATPase components of v 100.0 1.2E-42 2.6E-47 379.1 24.6 224 45-272 5-245 (539)
201 PRK10261 glutathione transport 100.0 1.6E-42 3.4E-47 398.1 26.6 221 44-270 312-552 (623)
202 COG4181 Predicted ABC-type tra 100.0 5.3E-43 1.1E-47 324.4 18.0 199 56-262 21-226 (228)
203 PRK14254 phosphate ABC transpo 100.0 3.1E-42 6.6E-47 359.6 26.1 222 42-270 36-268 (285)
204 COG1123 ATPase components of v 100.0 1E-42 2.2E-47 379.6 23.3 224 42-270 277-518 (539)
205 PRK14263 phosphate ABC transpo 100.0 2.8E-42 6E-47 355.7 25.3 221 43-270 6-244 (261)
206 PRK15439 autoinducer 2 ABC tra 100.0 9.7E-43 2.1E-47 391.7 23.6 214 44-269 10-227 (510)
207 PRK10247 putative ABC transpor 100.0 1.3E-42 2.7E-47 350.6 21.5 212 44-266 6-222 (225)
208 COG4604 CeuD ABC-type enteroch 100.0 1.4E-43 3.1E-48 335.2 12.0 220 45-270 1-224 (252)
209 PRK15056 manganese/iron transp 100.0 2.9E-42 6.4E-47 357.7 22.7 217 45-269 6-228 (272)
210 PRK14243 phosphate transporter 100.0 4.8E-42 1E-46 354.6 24.2 219 45-270 10-247 (264)
211 cd03252 ABCC_Hemolysin The ABC 100.0 1.6E-42 3.5E-47 352.3 20.3 212 47-271 2-225 (237)
212 PRK10261 glutathione transport 100.0 3.7E-42 8E-47 395.0 25.3 225 43-270 10-257 (623)
213 PRK10982 galactose/methyl gala 100.0 3.3E-42 7.2E-47 385.9 24.3 215 48-269 1-221 (491)
214 PRK13538 cytochrome c biogenes 100.0 4.1E-42 8.9E-47 341.7 22.2 199 46-255 2-202 (204)
215 PRK14266 phosphate ABC transpo 100.0 8.3E-42 1.8E-46 349.9 25.0 220 46-270 4-233 (250)
216 PRK13543 cytochrome c biogenes 100.0 4.2E-42 9.1E-47 344.1 22.3 203 44-257 10-212 (214)
217 CHL00131 ycf16 sulfate ABC tra 100.0 9.4E-42 2E-46 349.8 25.2 218 45-269 7-239 (252)
218 TIGR03269 met_CoM_red_A2 methy 100.0 7.6E-42 1.6E-46 385.6 26.8 220 47-273 2-260 (520)
219 PRK14257 phosphate ABC transpo 100.0 8.6E-42 1.9E-46 362.3 25.6 221 44-270 79-312 (329)
220 PRK14265 phosphate ABC transpo 100.0 9.1E-42 2E-46 354.3 25.1 220 44-270 19-257 (274)
221 PRK03695 vitamin B12-transport 100.0 1.1E-41 2.4E-46 348.7 25.0 208 48-269 3-220 (248)
222 cd03251 ABCC_MsbA MsbA is an e 100.0 4E-42 8.7E-47 348.6 21.3 212 47-271 2-225 (234)
223 PRK14252 phosphate ABC transpo 100.0 1.5E-41 3.3E-46 351.1 25.9 223 43-270 14-248 (265)
224 cd03213 ABCG_EPDR ABCG transpo 100.0 6.4E-42 1.4E-46 337.7 22.1 183 46-264 4-194 (194)
225 TIGR01257 rim_protein retinal- 100.0 6.1E-42 1.3E-46 421.8 26.6 223 44-274 1936-2162(2272)
226 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.1E-41 2.4E-46 343.4 23.9 202 46-264 23-224 (224)
227 TIGR03269 met_CoM_red_A2 methy 100.0 9.4E-42 2E-46 384.9 25.9 226 43-271 277-517 (520)
228 COG4161 ArtP ABC-type arginine 100.0 3.4E-42 7.3E-47 315.9 17.9 216 46-268 3-227 (242)
229 PRK11174 cysteine/glutathione 100.0 2.6E-42 5.7E-47 395.1 21.4 212 46-271 350-572 (588)
230 PRK15134 microcin C ABC transp 100.0 8.9E-42 1.9E-46 385.8 25.4 223 45-270 5-245 (529)
231 PRK15134 microcin C ABC transp 100.0 8.7E-42 1.9E-46 385.8 25.3 221 43-270 273-514 (529)
232 cd03245 ABCC_bacteriocin_expor 100.0 5.4E-42 1.2E-46 344.5 21.0 207 46-264 3-220 (220)
233 COG2274 SunT ABC-type bacterio 100.0 1.6E-42 3.4E-47 396.3 18.9 215 45-272 471-697 (709)
234 PRK11288 araG L-arabinose tran 100.0 7.2E-42 1.6E-46 384.0 23.9 215 45-266 4-224 (501)
235 COG4988 CydD ABC-type transpor 100.0 3.9E-42 8.5E-47 373.6 20.5 212 47-271 322-543 (559)
236 cd03233 ABC_PDR_domain1 The pl 100.0 1.2E-41 2.6E-46 337.8 22.3 190 46-264 4-202 (202)
237 TIGR02633 xylG D-xylose ABC tr 100.0 8.3E-42 1.8E-46 383.6 23.6 218 46-269 2-228 (500)
238 cd03232 ABC_PDR_domain2 The pl 100.0 1.1E-41 2.4E-46 335.4 21.6 182 46-264 4-192 (192)
239 cd03254 ABCC_Glucan_exporter_l 100.0 7.6E-42 1.6E-46 345.5 20.9 213 46-270 3-225 (229)
240 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7.9E-42 1.7E-46 347.4 21.1 214 47-272 2-227 (238)
241 PRK09580 sufC cysteine desulfu 100.0 3.5E-41 7.5E-46 344.7 25.7 225 46-278 2-241 (248)
242 PRK14264 phosphate ABC transpo 100.0 2.9E-41 6.3E-46 355.6 25.5 222 44-270 44-288 (305)
243 KOG0055 Multidrug/pheromone ex 100.0 1.4E-40 3.1E-45 386.1 33.6 215 44-271 349-576 (1228)
244 cd03231 ABC_CcmA_heme_exporter 100.0 1.4E-41 3E-46 337.1 21.7 195 47-255 2-198 (201)
245 PRK09544 znuC high-affinity zi 100.0 2.1E-41 4.6E-46 347.0 22.9 203 45-270 4-208 (251)
246 cd03230 ABC_DR_subfamily_A Thi 100.0 1.9E-41 4.2E-46 328.2 20.3 170 47-260 2-173 (173)
247 PRK13549 xylose transporter AT 100.0 1.8E-41 4E-46 381.2 23.0 219 44-269 258-492 (506)
248 PRK11176 lipid transporter ATP 100.0 9.7E-42 2.1E-46 390.0 20.7 215 45-271 341-567 (582)
249 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.9E-41 4.1E-46 394.4 23.3 211 45-271 451-673 (686)
250 PRK13539 cytochrome c biogenes 100.0 3.3E-41 7.2E-46 335.9 20.9 198 46-257 3-200 (207)
251 PRK10790 putative multidrug tr 100.0 3E-41 6.4E-46 386.6 23.0 211 46-270 341-562 (592)
252 cd03229 ABC_Class3 This class 100.0 2.8E-41 6E-46 328.6 19.2 172 47-259 2-178 (178)
253 COG4148 ModC ABC-type molybdat 100.0 5.5E-42 1.2E-46 339.8 14.4 196 63-271 16-218 (352)
254 cd03253 ABCC_ATM1_transporter 100.0 4.9E-41 1.1E-45 341.1 21.7 212 47-270 2-223 (236)
255 PRK09700 D-allose transporter 100.0 4.1E-41 9E-46 378.8 23.0 214 44-266 264-493 (510)
256 TIGR01166 cbiO cobalt transpor 100.0 7.4E-41 1.6E-45 328.8 21.9 179 56-242 3-188 (190)
257 KOG0057 Mitochondrial Fe/S clu 100.0 1.7E-41 3.8E-46 363.2 18.7 213 45-271 351-574 (591)
258 TIGR01189 ccmA heme ABC export 100.0 8.1E-41 1.8E-45 330.7 22.2 194 47-254 2-197 (198)
259 cd03217 ABC_FeS_Assembly ABC-t 100.0 6.3E-41 1.4E-45 332.2 21.3 187 47-273 2-195 (200)
260 KOG0058 Peptide exporter, ABC 100.0 1.5E-41 3.3E-46 375.3 18.6 217 44-271 464-691 (716)
261 TIGR02324 CP_lyasePhnL phospho 100.0 9.1E-41 2E-45 336.6 22.6 204 46-256 2-223 (224)
262 COG1129 MglA ABC-type sugar tr 100.0 5.6E-41 1.2E-45 363.8 22.4 216 43-265 6-228 (500)
263 cd03289 ABCC_CFTR2 The CFTR su 100.0 4.8E-41 1E-45 348.0 20.9 212 46-271 3-225 (275)
264 COG4987 CydC ABC-type transpor 100.0 1.2E-41 2.5E-46 364.3 16.2 214 45-271 336-561 (573)
265 COG1132 MdlB ABC-type multidru 100.0 4.4E-41 9.6E-46 383.3 21.9 213 46-271 329-552 (567)
266 PRK10938 putative molybdenum t 100.0 5.7E-41 1.2E-45 376.0 21.8 210 45-270 3-223 (490)
267 PRK11160 cysteine/glutathione 100.0 5E-41 1.1E-45 382.9 21.5 214 45-271 338-562 (574)
268 COG4619 ABC-type uncharacteriz 100.0 1.5E-41 3.2E-46 313.8 13.9 203 49-260 7-212 (223)
269 cd03215 ABC_Carb_Monos_II This 100.0 8E-41 1.7E-45 326.5 19.9 172 45-260 4-182 (182)
270 cd03244 ABCC_MRP_domain2 Domai 100.0 7.6E-41 1.6E-45 336.4 20.3 207 46-265 3-220 (221)
271 PRK13540 cytochrome c biogenes 100.0 1.2E-40 2.6E-45 330.1 21.0 194 46-253 2-197 (200)
272 TIGR02633 xylG D-xylose ABC tr 100.0 9.8E-41 2.1E-45 374.9 23.0 218 44-268 256-489 (500)
273 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4.4E-41 9.5E-46 392.9 20.2 212 45-271 477-700 (710)
274 cd03248 ABCC_TAP TAP, the Tran 100.0 4.5E-41 9.9E-46 339.2 17.1 205 43-260 9-226 (226)
275 cd03214 ABC_Iron-Siderophores_ 100.0 1.1E-40 2.4E-45 324.9 18.5 176 48-264 2-180 (180)
276 TIGR03375 type_I_sec_LssB type 100.0 8.2E-41 1.8E-45 389.5 20.9 215 45-272 463-689 (694)
277 TIGR01193 bacteriocin_ABC ABC- 100.0 9.6E-41 2.1E-45 389.8 21.5 214 45-271 473-697 (708)
278 cd03246 ABCC_Protease_Secretio 100.0 1.6E-40 3.4E-45 321.8 19.1 167 47-260 2-173 (173)
279 PRK10762 D-ribose transporter 100.0 2.8E-40 6E-45 371.2 23.9 214 44-269 256-482 (501)
280 PRK13657 cyclic beta-1,2-gluca 100.0 1.2E-40 2.7E-45 381.2 21.2 213 45-270 334-557 (588)
281 cd03288 ABCC_SUR2 The SUR doma 100.0 2.5E-40 5.5E-45 340.4 21.3 215 44-271 18-243 (257)
282 TIGR01187 potA spermidine/putr 100.0 4.1E-40 8.8E-45 349.6 23.2 188 76-270 1-189 (325)
283 TIGR03771 anch_rpt_ABC anchore 100.0 4.2E-40 9.1E-45 331.8 22.0 195 66-270 1-200 (223)
284 TIGR00958 3a01208 Conjugate Tr 100.0 1E-40 2.3E-45 388.8 20.1 212 45-271 478-702 (711)
285 PRK13545 tagH teichoic acids e 100.0 8.6E-40 1.9E-44 358.1 26.0 211 45-273 21-234 (549)
286 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.3E-40 7.1E-45 328.6 20.1 196 46-266 7-207 (207)
287 cd03247 ABCC_cytochrome_bd The 100.0 2.7E-40 5.8E-45 321.6 18.9 173 47-264 2-178 (178)
288 PRK13546 teichoic acids export 100.0 2.9E-39 6.4E-44 333.3 26.9 198 56-271 35-232 (264)
289 TIGR02203 MsbA_lipidA lipid A 100.0 2.2E-40 4.9E-45 377.9 19.8 213 46-270 331-555 (571)
290 PRK11288 araG L-arabinose tran 100.0 6.1E-40 1.3E-44 368.5 21.7 214 45-269 257-483 (501)
291 TIGR01842 type_I_sec_PrtD type 100.0 5.9E-40 1.3E-44 372.2 21.4 215 45-271 316-542 (544)
292 PRK15439 autoinducer 2 ABC tra 100.0 1.3E-39 2.9E-44 366.3 22.8 214 44-269 267-490 (510)
293 TIGR01846 type_I_sec_HlyB type 100.0 5.8E-40 1.3E-44 382.3 20.5 214 45-271 455-680 (694)
294 cd03250 ABCC_MRP_domain1 Domai 100.0 1.4E-39 3E-44 323.3 20.1 191 47-259 2-204 (204)
295 PRK10535 macrolide transporter 100.0 1.3E-38 2.7E-43 367.1 30.7 216 45-269 4-230 (648)
296 TIGR02204 MsbA_rel ABC transpo 100.0 8.4E-40 1.8E-44 373.6 20.4 213 45-270 337-562 (576)
297 cd03290 ABCC_SUR1_N The SUR do 100.0 3.5E-39 7.6E-44 323.8 21.9 201 47-259 2-218 (218)
298 PRK10789 putative multidrug tr 100.0 1.2E-39 2.5E-44 371.5 20.7 213 46-271 314-538 (569)
299 TIGR01192 chvA glucan exporter 100.0 1.7E-39 3.7E-44 371.0 21.7 214 45-271 334-558 (585)
300 COG3845 ABC-type uncharacteriz 100.0 2.1E-39 4.5E-44 344.8 20.3 214 45-265 4-223 (501)
301 cd03228 ABCC_MRP_Like The MRP 100.0 2E-39 4.4E-44 313.4 18.4 165 47-259 2-171 (171)
302 cd03216 ABC_Carb_Monos_I This 100.0 4.4E-39 9.5E-44 308.7 19.7 157 47-262 2-162 (163)
303 PRK13541 cytochrome c biogenes 100.0 5.7E-39 1.2E-43 316.8 21.0 192 46-253 2-193 (195)
304 COG4586 ABC-type uncharacteriz 100.0 2E-39 4.4E-44 321.1 17.2 211 57-274 36-249 (325)
305 COG4674 Uncharacterized ABC-ty 100.0 1.4E-39 3.1E-44 307.6 14.4 219 44-270 4-234 (249)
306 PRK15064 ABC transporter ATP-b 100.0 1.1E-38 2.3E-43 360.7 23.4 209 46-271 2-242 (530)
307 PRK15177 Vi polysaccharide exp 100.0 1.5E-38 3.3E-43 318.2 21.7 195 59-275 1-196 (213)
308 PRK10982 galactose/methyl gala 100.0 8.8E-39 1.9E-43 358.3 22.2 214 44-267 249-476 (491)
309 COG4172 ABC-type uncharacteriz 100.0 1.4E-38 3.1E-43 328.8 21.7 223 43-271 274-516 (534)
310 PRK10938 putative molybdenum t 100.0 6E-39 1.3E-43 359.6 20.6 216 43-264 258-485 (490)
311 COG0396 sufC Cysteine desulfur 100.0 3.8E-38 8.3E-43 306.2 23.0 228 45-280 3-242 (251)
312 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.6E-38 7.7E-43 327.8 24.3 203 42-270 36-246 (282)
313 cd03237 ABC_RNaseL_inhibitor_d 100.0 4.6E-38 1E-42 321.2 24.8 190 60-269 9-205 (246)
314 PTZ00265 multidrug resistance 100.0 3.8E-39 8.2E-44 396.7 19.7 215 46-271 1166-1452(1466)
315 PRK11819 putative ABC transpor 100.0 3E-38 6.6E-43 358.7 23.8 208 44-270 5-249 (556)
316 cd03223 ABCD_peroxisomal_ALDP 100.0 3.8E-38 8.3E-43 303.1 19.9 161 47-258 2-163 (166)
317 TIGR02868 CydC thiol reductant 100.0 9.5E-39 2.1E-43 361.3 17.6 185 46-241 335-529 (529)
318 PRK15064 ABC transporter ATP-b 100.0 3.6E-38 7.9E-43 356.4 22.0 203 44-270 318-524 (530)
319 PRK10522 multidrug transporter 100.0 3.1E-38 6.8E-43 358.2 21.2 203 45-263 322-530 (547)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.2E-38 1.1E-42 356.6 22.9 208 45-271 4-248 (552)
321 COG4608 AppF ABC-type oligopep 100.0 4.3E-38 9.3E-43 315.7 18.8 187 45-271 4-199 (268)
322 TIGR02857 CydD thiol reductant 100.0 2.1E-38 4.5E-43 358.5 18.3 198 45-255 320-529 (529)
323 PLN03232 ABC transporter C fam 100.0 3.5E-38 7.6E-43 391.1 21.1 213 45-271 1234-1458(1495)
324 PLN03130 ABC transporter C fam 100.0 5.2E-38 1.1E-42 390.0 22.2 213 45-271 1237-1461(1622)
325 COG4172 ABC-type uncharacteriz 100.0 9.5E-38 2.1E-42 322.7 20.4 225 43-270 4-246 (534)
326 COG4618 ArpD ABC-type protease 100.0 4.7E-38 1E-42 333.8 18.0 221 44-274 333-563 (580)
327 COG1119 ModF ABC-type molybden 100.0 4.3E-38 9.3E-43 309.4 15.8 217 43-265 29-256 (257)
328 KOG0055 Multidrug/pheromone ex 100.0 6.7E-38 1.5E-42 363.9 20.0 213 46-271 988-1213(1228)
329 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.1E-37 2.5E-42 354.0 20.8 204 46-263 338-551 (555)
330 PTZ00265 multidrug resistance 100.0 9.1E-38 2E-42 384.5 20.6 210 45-258 382-655 (1466)
331 cd03236 ABC_RNaseL_inhibitor_d 100.0 2E-37 4.4E-42 317.9 19.6 200 49-264 4-220 (255)
332 PRK11819 putative ABC transpor 100.0 2.7E-37 5.9E-42 350.9 22.6 205 43-268 322-530 (556)
333 PTZ00243 ABC transporter; Prov 100.0 1.5E-37 3.3E-42 385.3 22.1 213 45-271 1308-1533(1560)
334 PRK13409 putative ATPase RIL; 100.0 3.1E-37 6.7E-42 350.4 22.7 200 43-266 338-537 (590)
335 TIGR00957 MRP_assoc_pro multi 100.0 2.1E-37 4.5E-42 384.7 21.7 213 45-271 1284-1508(1522)
336 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.7E-37 1E-41 348.7 22.3 205 43-268 320-528 (552)
337 KOG0056 Heavy metal exporter H 100.0 3.5E-38 7.7E-43 330.9 10.8 248 15-271 498-761 (790)
338 COG1101 PhnK ABC-type uncharac 100.0 8.4E-37 1.8E-41 293.2 17.0 202 56-264 17-231 (263)
339 PRK10636 putative ABC transpor 100.0 2.5E-36 5.4E-41 347.2 22.6 204 43-271 310-517 (638)
340 TIGR01271 CFTR_protein cystic 100.0 1.7E-36 3.7E-41 375.6 22.6 212 45-271 1217-1440(1490)
341 cd03222 ABC_RNaseL_inhibitor T 100.0 2.5E-36 5.4E-41 292.5 18.0 155 49-268 4-160 (177)
342 KOG0059 Lipid exporter ABCA1 a 100.0 1.6E-36 3.5E-41 359.0 19.4 223 44-274 563-790 (885)
343 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.7E-36 8E-41 282.5 17.7 143 47-259 2-144 (144)
344 PRK11147 ABC transporter ATPas 100.0 6E-36 1.3E-40 344.6 21.8 206 43-269 317-526 (635)
345 COG4167 SapF ABC-type antimicr 100.0 1.9E-35 4.2E-40 276.6 19.9 221 45-270 4-238 (267)
346 PRK10636 putative ABC transpor 100.0 1.4E-35 2.9E-40 341.2 22.0 205 46-269 2-234 (638)
347 PLN03073 ABC transporter F fam 100.0 2.8E-35 6.2E-40 340.2 23.6 206 44-272 507-715 (718)
348 COG4107 PhnK ABC-type phosphon 100.0 1.1E-35 2.3E-40 276.3 16.1 218 43-270 4-240 (258)
349 COG1134 TagH ABC-type polysacc 100.0 9E-35 1.9E-39 286.4 22.7 205 54-275 36-240 (249)
350 TIGR00954 3a01203 Peroxysomal 100.0 1.5E-35 3.2E-40 342.1 19.9 198 45-257 451-653 (659)
351 PRK11147 ABC transporter ATPas 100.0 5.7E-35 1.2E-39 336.5 22.8 205 45-269 3-241 (635)
352 COG4136 ABC-type uncharacteriz 100.0 1.4E-35 3.1E-40 269.4 13.7 191 46-243 3-197 (213)
353 cd03238 ABC_UvrA The excision 100.0 1.6E-34 3.5E-39 279.6 20.0 159 57-262 7-168 (176)
354 COG4133 CcmA ABC-type transpor 100.0 7.6E-35 1.6E-39 275.0 16.8 188 46-243 3-192 (209)
355 PLN03232 ABC transporter C fam 100.0 7.3E-35 1.6E-39 361.6 21.9 204 45-271 614-828 (1495)
356 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.5E-34 3.2E-39 275.4 18.5 153 48-259 2-157 (157)
357 PRK13409 putative ATPase RIL; 100.0 7.3E-35 1.6E-39 331.0 18.1 190 50-258 78-287 (590)
358 PLN03130 ABC transporter C fam 100.0 1.5E-34 3.3E-39 359.2 22.2 203 45-271 614-828 (1622)
359 COG5265 ATM1 ABC-type transpor 100.0 1.8E-34 4E-39 300.4 14.7 213 48-271 265-486 (497)
360 TIGR00957 MRP_assoc_pro multi 100.0 8.7E-34 1.9E-38 352.5 22.9 205 45-271 636-850 (1522)
361 TIGR01271 CFTR_protein cystic 100.0 2.2E-33 4.7E-38 348.0 23.6 191 57-271 438-636 (1490)
362 PTZ00243 ABC transporter; Prov 100.0 1.6E-32 3.5E-37 340.7 23.1 192 56-270 671-869 (1560)
363 COG0488 Uup ATPase components 100.0 7E-33 1.5E-37 307.9 17.7 205 45-268 3-237 (530)
364 PLN03073 ABC transporter F fam 100.0 6.5E-33 1.4E-37 320.6 17.4 215 44-269 176-429 (718)
365 cd03270 ABC_UvrA_I The excisio 100.0 1.6E-31 3.5E-36 269.8 21.0 192 56-264 6-226 (226)
366 PF00005 ABC_tran: ABC transpo 100.0 4E-32 8.8E-37 252.1 12.9 134 61-209 1-137 (137)
367 KOG0054 Multidrug resistance-a 100.0 1.8E-31 3.9E-36 317.2 19.2 213 45-271 1138-1362(1381)
368 KOG0054 Multidrug resistance-a 100.0 1.2E-29 2.6E-34 301.8 34.5 203 45-270 518-730 (1381)
369 cd03271 ABC_UvrA_II The excisi 100.0 1.7E-30 3.7E-35 266.1 20.5 194 58-266 8-261 (261)
370 COG4778 PhnL ABC-type phosphon 100.0 6.2E-31 1.3E-35 243.8 13.3 204 47-257 6-227 (235)
371 COG1129 MglA ABC-type sugar tr 100.0 1.2E-29 2.5E-34 275.8 20.3 213 45-267 263-486 (500)
372 COG0488 Uup ATPase components 100.0 1.7E-29 3.7E-34 280.8 19.9 206 41-271 317-525 (530)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 7.6E-30 1.6E-34 252.1 12.9 164 62-257 14-190 (197)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 3.5E-29 7.7E-34 255.3 13.0 187 53-256 10-234 (243)
375 COG4138 BtuD ABC-type cobalami 100.0 8.5E-30 1.8E-34 237.2 6.3 197 60-270 14-220 (248)
376 cd03273 ABC_SMC2_euk Eukaryoti 99.9 4.2E-28 9.2E-33 248.8 9.9 182 71-256 25-242 (251)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4.5E-29 9.7E-34 249.3 1.7 184 48-257 8-204 (212)
378 cd03240 ABC_Rad50 The catalyti 99.9 2.4E-27 5.1E-32 235.7 13.2 167 63-257 15-197 (204)
379 COG3845 ABC-type uncharacteriz 99.9 1.4E-26 3.1E-31 247.0 18.4 221 43-269 255-490 (501)
380 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.6E-26 3.5E-31 231.3 16.0 190 47-259 7-210 (213)
381 COG4615 PvdE ABC-type sideroph 99.9 2.1E-27 4.6E-32 245.3 9.2 206 44-264 321-530 (546)
382 PRK00635 excinuclease ABC subu 99.9 1.4E-25 3E-30 273.7 23.6 204 59-271 609-906 (1809)
383 PRK00349 uvrA excinuclease ABC 99.9 3.5E-25 7.7E-30 260.3 22.4 125 131-270 792-926 (943)
384 COG4178 ABC-type uncharacteriz 99.9 4E-25 8.6E-30 244.8 15.5 195 44-256 391-587 (604)
385 COG4170 SapD ABC-type antimicr 99.9 2.5E-25 5.5E-30 212.8 10.3 214 55-271 17-248 (330)
386 COG1245 Predicted ATPase, RNas 99.9 3.9E-24 8.5E-29 224.8 18.1 185 49-256 346-530 (591)
387 KOG0927 Predicted transporter 99.9 5E-25 1.1E-29 236.1 10.5 204 42-268 386-593 (614)
388 KOG0927 Predicted transporter 99.9 1.2E-24 2.6E-29 233.2 13.4 214 45-270 75-308 (614)
389 TIGR00630 uvra excinuclease AB 99.9 1.2E-23 2.5E-28 247.1 22.3 125 130-269 789-923 (924)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.9 3.3E-24 7.2E-29 212.1 15.1 172 60-259 11-192 (198)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.7E-24 5.8E-29 220.1 8.4 181 69-257 21-233 (247)
392 PF01061 ABC2_membrane: ABC-2 99.9 9.9E-25 2.2E-29 215.3 1.1 208 365-575 1-210 (210)
393 KOG0066 eIF2-interacting prote 99.9 1.4E-22 3E-27 211.3 12.6 193 41-258 582-777 (807)
394 KOG2355 Predicted ABC-type tra 99.9 4.4E-22 9.4E-27 190.3 14.6 209 45-270 13-236 (291)
395 KOG0060 Long-chain acyl-CoA tr 99.9 6.8E-22 1.5E-26 213.6 16.2 202 44-257 432-641 (659)
396 KOG0062 ATPase component of AB 99.9 1.1E-22 2.3E-27 217.2 9.4 202 46-270 81-284 (582)
397 COG1245 Predicted ATPase, RNas 99.9 1.9E-21 4.2E-26 204.7 11.8 170 68-257 97-288 (591)
398 cd03280 ABC_MutS2 MutS2 homolo 99.9 2E-21 4.4E-26 192.6 10.5 147 60-264 16-172 (200)
399 KOG0062 ATPase component of AB 99.8 3.9E-21 8.4E-26 205.4 12.6 199 42-262 359-559 (582)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.8 4.8E-21 1E-25 191.6 11.6 168 62-259 15-211 (213)
401 COG2401 ABC-type ATPase fused 99.8 8.9E-21 1.9E-25 197.4 13.9 186 55-261 393-588 (593)
402 cd03283 ABC_MutS-like MutS-lik 99.8 2.9E-20 6.4E-25 184.0 10.0 148 57-255 13-163 (199)
403 cd03285 ABC_MSH2_euk MutS2 hom 99.8 4E-20 8.6E-25 186.1 9.3 155 56-265 15-175 (222)
404 cd03239 ABC_SMC_head The struc 99.8 4.3E-19 9.3E-24 172.6 15.5 74 181-257 95-172 (178)
405 PRK00635 excinuclease ABC subu 99.8 1.2E-18 2.5E-23 213.6 21.5 198 59-271 1504-1796(1809)
406 KOG0064 Peroxisomal long-chain 99.8 6E-20 1.3E-24 196.0 7.9 172 56-248 493-674 (728)
407 COG0178 UvrA Excinuclease ATPa 99.8 1.9E-18 4.1E-23 193.2 19.1 127 131-271 784-919 (935)
408 cd03241 ABC_RecN RecN ATPase i 99.8 8.4E-19 1.8E-23 182.5 15.2 76 179-258 169-248 (276)
409 cd03227 ABC_Class2 ABC-type Cl 99.8 9.2E-19 2E-23 167.8 12.6 140 62-257 12-155 (162)
410 cd03243 ABC_MutS_homologs The 99.7 1.1E-18 2.3E-23 173.3 6.7 155 63-269 21-177 (202)
411 PRK00349 uvrA excinuclease ABC 99.7 1.5E-17 3.3E-22 196.2 15.4 134 128-270 434-584 (943)
412 TIGR00630 uvra excinuclease AB 99.7 3.2E-17 7E-22 193.1 16.0 134 128-270 432-582 (924)
413 KOG0066 eIF2-interacting prote 99.7 9.8E-19 2.1E-23 182.7 2.8 212 46-267 265-495 (807)
414 cd03242 ABC_RecF RecF is a rec 99.7 9.1E-17 2E-21 166.7 15.5 78 177-260 180-269 (270)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.7 4.5E-17 9.7E-22 161.8 10.3 142 56-249 14-157 (204)
416 TIGR02858 spore_III_AA stage I 99.7 3.3E-16 7.2E-21 161.4 11.3 140 72-269 112-267 (270)
417 KOG0063 RNAse L inhibitor, ABC 99.7 1.1E-15 2.4E-20 160.2 14.8 178 57-256 348-531 (592)
418 cd03284 ABC_MutS1 MutS1 homolo 99.6 5.1E-16 1.1E-20 155.7 10.3 160 57-269 17-179 (216)
419 TIGR01247 drrB daunorubicin re 99.6 1E-12 2.2E-17 133.5 24.5 226 373-627 1-234 (236)
420 PRK00064 recF recombination pr 99.5 2.2E-13 4.7E-18 147.1 19.9 79 177-260 270-359 (361)
421 smart00534 MUTSac ATPase domai 99.5 6E-15 1.3E-19 144.5 5.3 84 177-263 58-142 (185)
422 PF02463 SMC_N: RecF/RecN/SMC 99.5 6.1E-15 1.3E-19 148.1 3.5 88 154-256 121-212 (220)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.5 1.1E-13 2.3E-18 138.7 12.0 135 58-243 16-156 (213)
424 cd00820 PEPCK_HprK Phosphoenol 99.5 5.6E-14 1.2E-18 124.1 6.1 74 58-140 2-78 (107)
425 TIGR01291 nodJ ABC-2 type tran 99.4 4E-11 8.7E-16 123.3 26.6 236 367-633 7-251 (253)
426 TIGR01069 mutS2 MutS2 family p 99.4 1.6E-13 3.5E-18 160.3 9.9 136 58-243 303-447 (771)
427 TIGR00025 Mtu_efflux ABC trans 99.4 2.7E-11 5.8E-16 122.9 24.7 222 379-630 2-229 (232)
428 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 3.9E-12 8.4E-17 126.7 17.4 151 454-633 57-207 (208)
429 KOG0063 RNAse L inhibitor, ABC 99.4 8.6E-14 1.9E-18 146.2 5.5 166 69-257 98-288 (592)
430 cd03287 ABC_MSH3_euk MutS3 hom 99.4 9.3E-13 2E-17 132.3 12.7 142 57-249 17-160 (222)
431 TIGR03861 phenyl_ABC_PedC alco 99.4 1.1E-10 2.4E-15 119.9 26.9 236 364-631 1-250 (253)
432 PRK07721 fliI flagellum-specif 99.4 7E-12 1.5E-16 137.4 18.4 174 57-268 145-340 (438)
433 PTZ00132 GTP-binding nuclear p 99.4 5E-13 1.1E-17 133.7 7.1 44 185-228 157-205 (215)
434 cd01128 rho_factor Transcripti 99.3 1.3E-12 2.8E-17 133.5 5.9 176 66-260 11-211 (249)
435 TIGR00634 recN DNA repair prot 99.3 6E-12 1.3E-16 143.6 9.7 77 179-259 439-519 (563)
436 TIGR00611 recf recF protein. A 99.3 2.7E-11 6E-16 130.7 13.9 60 179-242 274-342 (365)
437 PRK10869 recombination and rep 99.3 1.4E-11 3E-16 139.7 10.5 77 179-259 429-509 (553)
438 PRK15066 inner membrane transp 99.3 5E-09 1.1E-13 107.9 28.4 241 364-633 7-253 (257)
439 PHA02562 46 endonuclease subun 99.3 1.2E-11 2.5E-16 141.5 9.3 79 177-260 465-555 (562)
440 TIGR00618 sbcc exonuclease Sbc 99.3 1.6E-11 3.4E-16 149.8 11.0 82 175-258 945-1036(1042)
441 PRK00409 recombination and DNA 99.2 9.3E-12 2E-16 146.0 8.3 83 177-263 387-470 (782)
442 PRK08533 flagellar accessory p 99.2 5.1E-11 1.1E-15 120.7 12.2 150 67-256 20-184 (230)
443 PRK14079 recF recombination pr 99.2 2.7E-10 5.9E-15 122.4 18.1 76 179-263 262-346 (349)
444 cd03286 ABC_MSH6_euk MutS6 hom 99.2 4.8E-11 1E-15 119.7 11.5 136 57-243 16-155 (218)
445 PF13304 AAA_21: AAA domain; P 99.2 1.4E-11 3E-16 123.7 6.8 64 178-242 234-300 (303)
446 COG0178 UvrA Excinuclease ATPa 99.2 1.9E-10 4.2E-15 129.8 15.6 137 128-271 426-577 (935)
447 cd01124 KaiC KaiC is a circadi 99.2 1.5E-10 3.2E-15 112.8 11.4 81 175-256 66-163 (187)
448 TIGR02788 VirB11 P-type DNA tr 99.2 7.2E-11 1.6E-15 124.9 9.6 141 64-270 137-280 (308)
449 PRK13695 putative NTPase; Prov 99.1 1.7E-11 3.7E-16 118.8 3.1 79 178-263 76-156 (174)
450 cd01120 RecA-like_NTPases RecA 99.1 2.1E-10 4.6E-15 108.1 9.3 129 73-243 1-139 (165)
451 PRK13830 conjugal transfer pro 99.1 1.1E-09 2.3E-14 129.9 16.1 69 196-266 650-728 (818)
452 PRK03918 chromosome segregatio 99.1 2.5E-10 5.3E-15 137.5 10.1 79 176-257 784-868 (880)
453 PRK10246 exonuclease subunit S 99.1 3.9E-10 8.4E-15 137.1 10.6 80 176-257 945-1032(1047)
454 COG3910 Predicted ATPase [Gene 99.1 2.6E-09 5.6E-14 102.0 13.7 82 173-258 122-204 (233)
455 PRK01156 chromosome segregatio 99.0 8.2E-10 1.8E-14 133.1 11.3 79 176-256 797-883 (895)
456 PRK06793 fliI flagellum-specif 99.0 8.2E-10 1.8E-14 120.4 9.3 156 58-266 144-306 (432)
457 TIGR03238 dnd_assoc_3 dnd syst 99.0 2.5E-10 5.5E-15 124.2 3.4 51 58-110 19-70 (504)
458 COG0842 ABC-type multidrug tra 98.9 1E-07 2.2E-12 97.9 21.2 234 375-634 42-284 (286)
459 PRK06067 flagellar accessory p 98.9 9.8E-09 2.1E-13 104.3 12.7 162 60-257 13-187 (234)
460 TIGR00606 rad50 rad50. This fa 98.9 1.9E-09 4.1E-14 134.3 8.7 72 177-249 1196-1277(1311)
461 TIGR02168 SMC_prok_B chromosom 98.9 1.8E-09 3.9E-14 133.4 7.7 77 176-256 1085-1165(1179)
462 cd01131 PilT Pilus retraction 98.9 9.1E-09 2E-13 101.9 10.6 119 73-256 3-122 (198)
463 cd01125 repA Hexameric Replica 98.9 1.2E-08 2.6E-13 104.1 11.7 137 71-242 1-160 (239)
464 smart00382 AAA ATPases associa 98.8 1.3E-07 2.8E-12 85.8 15.6 118 70-239 1-124 (148)
465 TIGR02169 SMC_prok_A chromosom 98.8 6.9E-09 1.5E-13 128.4 8.2 77 177-257 1071-1151(1164)
466 PRK06995 flhF flagellar biosyn 98.8 1.6E-08 3.5E-13 111.9 8.9 151 59-239 244-400 (484)
467 PRK02224 chromosome segregatio 98.8 1.7E-08 3.7E-13 121.6 9.6 78 177-257 778-868 (880)
468 PRK13891 conjugal transfer pro 98.7 1.6E-07 3.5E-12 112.1 16.7 55 191-247 680-735 (852)
469 cd01130 VirB11-like_ATPase Typ 98.7 3.1E-08 6.6E-13 97.1 8.1 84 60-143 14-99 (186)
470 TIGR01248 drrC daunorubicin re 98.7 5.7E-07 1.2E-11 85.3 15.3 131 438-571 14-146 (152)
471 TIGR02655 circ_KaiC circadian 98.7 7.7E-09 1.7E-13 116.1 2.7 166 60-256 9-190 (484)
472 TIGR03881 KaiC_arch_4 KaiC dom 98.7 2.7E-08 5.7E-13 100.6 6.0 165 60-256 8-188 (229)
473 PRK07196 fliI flagellum-specif 98.6 4E-08 8.7E-13 107.4 6.4 174 57-263 142-333 (434)
474 TIGR01026 fliI_yscN ATPase Fli 98.6 2.8E-07 6.2E-12 101.5 12.1 176 57-269 150-346 (440)
475 TIGR01420 pilT_fam pilus retra 98.6 3.4E-07 7.4E-12 98.4 11.7 123 68-255 119-242 (343)
476 PRK06002 fliI flagellum-specif 98.5 1.7E-07 3.8E-12 102.5 7.5 81 45-126 139-230 (450)
477 PRK05399 DNA mismatch repair p 98.5 3.1E-07 6.7E-12 109.4 9.9 139 58-251 595-738 (854)
478 PRK13898 type IV secretion sys 98.5 2.4E-06 5.3E-11 101.8 16.9 49 194-243 638-687 (800)
479 COG0419 SbcC ATPase involved i 98.5 4.7E-07 1E-11 109.3 10.0 79 176-257 811-897 (908)
480 PRK09825 idnK D-gluconate kina 98.4 1.8E-07 3.8E-12 91.0 4.4 66 70-139 2-69 (176)
481 cd02023 UMPK Uridine monophosp 98.4 1.4E-07 3.1E-12 93.1 3.8 113 73-213 1-113 (198)
482 TIGR00416 sms DNA repair prote 98.3 1.6E-06 3.4E-11 96.5 9.4 144 60-259 82-247 (454)
483 cd01122 GP4d_helicase GP4d_hel 98.3 4.8E-06 1E-10 86.3 12.1 163 58-241 17-191 (271)
484 PRK01889 GTPase RsgA; Reviewed 98.3 9.2E-07 2E-11 95.4 6.8 78 61-139 185-262 (356)
485 PLN03210 Resistant to P. syrin 98.3 1.7E-06 3.8E-11 107.0 9.3 162 64-278 200-365 (1153)
486 TIGR02680 conserved hypothetic 98.3 1.1E-06 2.4E-11 109.5 7.5 61 177-241 1244-1316(1353)
487 PF06422 PDR_CDR: CDR ABC tran 98.2 1.4E-06 2.9E-11 77.1 5.3 59 580-638 18-79 (103)
488 PRK13873 conjugal transfer ATP 98.2 1.5E-05 3.2E-10 95.3 15.7 47 195-242 632-679 (811)
489 cd01121 Sms Sms (bacterial rad 98.2 5.7E-06 1.2E-10 89.6 10.8 143 61-258 71-234 (372)
490 PF12679 ABC2_membrane_2: ABC- 98.2 0.00044 9.4E-09 71.4 24.2 231 369-631 2-274 (277)
491 COG1682 TagG ABC-type polysacc 98.2 0.00054 1.2E-08 70.8 24.0 207 363-577 16-226 (263)
492 PF09818 ABC_ATPase: Predicted 98.2 2.5E-05 5.5E-10 84.4 14.5 80 179-259 321-415 (448)
493 TIGR03518 ABC_perm_GldF glidin 98.2 0.00088 1.9E-08 68.4 25.0 219 368-631 2-239 (240)
494 PRK09270 nucleoside triphospha 98.2 2.9E-06 6.4E-11 85.9 6.2 74 69-144 31-108 (229)
495 PRK06315 type III secretion sy 98.1 4.6E-06 1E-10 91.6 8.1 108 57-166 151-277 (442)
496 PRK08149 ATP synthase SpaL; Va 98.1 3.4E-06 7.3E-11 92.3 6.6 69 56-125 137-215 (428)
497 PRK10078 ribose 1,5-bisphospho 98.1 2.3E-06 5E-11 83.8 4.9 37 71-110 2-38 (186)
498 PF13555 AAA_29: P-loop contai 98.1 1.6E-06 3.5E-11 68.9 2.9 38 61-98 12-50 (62)
499 TIGR02903 spore_lon_C ATP-depe 98.1 9.1E-06 2E-10 93.8 9.9 110 70-225 174-291 (615)
500 TIGR00554 panK_bact pantothena 98.1 2.8E-06 6.1E-11 88.7 5.2 72 72-144 63-138 (290)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-109 Score=941.84 Aligned_cols=563 Identities=41% Similarity=0.712 Sum_probs=501.6
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC---CccEEEECCCcCCchhhcccEEEEccCCCCCCCCC
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP---QSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLT 132 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~---~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 132 (643)
..+++|+|||++++|||++||||||||||||||++|+|+..+ .+|+|++||++.+.+.+++.+|||.|||.++|+||
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LT 120 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLT 120 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccccc
Confidence 468999999999999999999999999999999999999976 49999999988888889999999999999999999
Q ss_pred HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 006505 133 VEETLMFSAKLRLRL--PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSG 210 (643)
Q Consensus 133 v~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsg 210 (643)
|+|++.|++.+|++. ++++++++|+++++++||++|+|+++|+...+++||||||||+||.+|++||+||+|||||||
T Consensus 121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 999999999999986 788899999999999999999999999998899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCChhHHH
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVEFA 290 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 290 (643)
||+.++.++++.|+++|++ |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||++.|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchH--HHHHHhhhcCCccccchhhHHhhhhhhccccCcchhHHHHHhhhhhhhHHhhhcCCCCCCCCCCCHHHHHH
Q 006505 291 IESIDLI--QEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRDFANSRFKETI 368 (643)
Q Consensus 291 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~ 368 (643)
+|+++.. .+..... .+.++... ..+. ... ..+ ......... ...........++||.|++
T Consensus 280 l~l~s~~~~~~~~~~~---------~~~~~~~~---~~~~-~~~-~~~---~~~~~~~~~-~~~~~~~~~~~~s~~~q~~ 341 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA---------VRIAKLIN---KFSQ-TDN-LKK---TLEALEKSL-STSKKVEIGTSPSWWTQFK 341 (613)
T ss_pred HHHHccCCCchhHHhH---------HHHHHHhh---hccc-cch-hhh---hHHHHhhhc-ccccccccccCCcHHHHHH
Confidence 9998743 1110000 00000000 0000 000 000 000000000 0001111112789999999
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHh-HHHHHHHhhHHHHH
Q 006505 369 ILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSCTTE-ALPIFLQEREILMK 447 (643)
Q Consensus 369 ~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~~~~-~~~~f~~er~v~~r 447 (643)
.|++|.+++.+|||.+...|+++.+++|+++|++||+++++..++++|.|++|+.+.++.+.++. +++.|++||++|.|
T Consensus 342 ~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~r 421 (613)
T KOG0061|consen 342 ILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLR 421 (613)
T ss_pred HHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998766654 89999999999999
Q ss_pred HhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 006505 448 ETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGN 527 (643)
Q Consensus 448 E~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~ 527 (643)
|+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..+++++++.++++++||...|+
T Consensus 422 E~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~ 501 (613)
T KOG0061|consen 422 ETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLAT 501 (613)
T ss_pred HHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCC-CCccccccCCccccchHHHHHhcCCCCCC
Q 006505 528 SVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSD-SDKCLQYIFGKCVVKGEDVLREAGYEEES 606 (643)
Q Consensus 528 ~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~-~~~C~~~~~~~c~~~G~~~L~~~g~~~~~ 606 (643)
.++++++++|++|+||+++.++||+||+|++|+|+++|+||++++|||.+ ...|.......|..+|.+++++.+++..+
T Consensus 502 ~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 581 (613)
T KOG0061|consen 502 SLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSS 581 (613)
T ss_pred ehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999999999997 36786543357888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 006505 607 SWRNLVIMVGFILIYRFISYVILRFRCSQRS 637 (643)
Q Consensus 607 ~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 637 (643)
.|.|+.++++++++|++++|++|+++.++++
T Consensus 582 ~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 582 FWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 9999999999999999999999999887653
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.1e-107 Score=935.41 Aligned_cols=571 Identities=30% Similarity=0.509 Sum_probs=495.4
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCCcCCchhhcccEEEEccCCCCCCCC
Q 006505 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLL 131 (643)
Q Consensus 55 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~l 131 (643)
.+++++|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+||++++...+++.+|||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 45688999999999999999999999999999999999998875 899999999987667788999999999999999
Q ss_pred CHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCChhhhhhhcCCC-cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 006505 132 TVEETLMFSAKLRLRL--PQAQLRARVKSLVKELGLEHVAMARVGDD-RVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208 (643)
Q Consensus 132 Tv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~~~~~~~vg~~-~~~~LSGGerqRv~ia~aL~~~p~illlDEPt 208 (643)
||+|||.|++.++.+. ++++.+++++++++.+||.+++|+.+|++ ..++|||||||||+||++|+++|++++|||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999999999887653 55667788999999999999999999976 47899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCChhH
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNVVE 288 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ad 288 (643)
+|||+.++.++++.|++++++ |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+|
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad 273 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPAD 273 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHH
Confidence 999999999999999999975 9999999999987799999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHhhhcCCccccchhhHHhhhhhhccccCcchhHHHHHhhhhhhhHHhhh-cCCCCCCCCCCCHHHHH
Q 006505 289 FAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMN-VGIEIPRDFANSRFKET 367 (643)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~Q~ 367 (643)
|++++++..+...... ... .+.+.+.+.+ ++...+...........+..... .......++..++++|+
T Consensus 274 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~--------s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 343 (617)
T TIGR00955 274 FYVQVLAVIPGSENES-RER-IEKICDSFAV--------SDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQF 343 (617)
T ss_pred HHHHHhhcCcccccch-HHH-HHHHHHHHhc--------chhhHHHHHHhhhhhccccccccccccccccccCCCHHHHH
Confidence 9999876432211000 000 0000000000 00000000000000000000000 00112345678999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhhHHHH
Q 006505 368 IILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSCT-TEALPIFLQEREILM 446 (643)
Q Consensus 368 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~~-~~~~~~f~~er~v~~ 446 (643)
++|++|++++.||||.++.+|+++++++|+++|++||++++++.++++|.|++|+++++..+.+ +..++.|+.||++|+
T Consensus 344 ~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~ 423 (617)
T TIGR00955 344 YALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFL 423 (617)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887775 467899999999999
Q ss_pred HHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 006505 447 KETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVG 526 (643)
Q Consensus 447 rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a 526 (643)
||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|
T Consensus 424 rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a 503 (617)
T TIGR00955 424 RETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMA 503 (617)
T ss_pred HhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC--Cccccc-cCCccccchHHHHHhcCCC
Q 006505 527 NSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS--DKCLQY-IFGKCVVKGEDVLREAGYE 603 (643)
Q Consensus 527 ~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~--~~C~~~-~~~~c~~~G~~~L~~~g~~ 603 (643)
+.+++++++++++|+||+++.++||+||+|++|+||++|++||++.|||.+. .+|.+. ..+.|+.+|+++|+.+|++
T Consensus 504 ~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~ 583 (617)
T TIGR00955 504 LTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFR 583 (617)
T ss_pred HHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999887 368642 2356999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 006505 604 EESSWRNLVIMVGFILIYRFISYVILRFRCSQR 636 (643)
Q Consensus 604 ~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~ 636 (643)
.++.|+|+++|++++++|++++|++|+++.+++
T Consensus 584 ~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 584 NADLYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999877654
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.2e-107 Score=935.79 Aligned_cols=565 Identities=29% Similarity=0.477 Sum_probs=475.6
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC--ccEEEECCCcCCchhhcccEEEEccCC
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ--SGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~--~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
.++++++|+++++|+|+|+++++||++||+||||||||||||+|+|+.+|+ +|+|.+||+++.. ..++.+|||+|++
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~ 149 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDD 149 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-hhccceEEECccc
Confidence 556778898899999999999999999999999999999999999999885 8999999998753 3456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 126 TLFPLLTVEETLMFSAKLRLRL--PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
.+++.+||+||+.|++.++.+. ++++.+++++++++.+||+++.|+.+|++.+++||||||||++||++|+++|++|+
T Consensus 150 ~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 9999999999999988766432 45566678999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCCCCC
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMH 283 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~ 283 (643)
|||||+|||+.++.++++.|++++++ |+|||+++|||+.++.++||++++|++|++++.|+++++.+||+++|++||++
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~ 308 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFP 308 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCC
Confidence 99999999999999999999999874 99999999999866899999999999999999999999999999999999999
Q ss_pred CChhHHHHHhcchHHHHHH--hhhcCCccccchhhHHhhhhhhccccCcchhHHHHHhhh---hhhhHHhh---hcCC-C
Q 006505 284 VNVVEFAIESIDLIQEQRK--IQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQS---KVIDEEIM---NVGI-E 354 (643)
Q Consensus 284 ~n~ad~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~-~ 354 (643)
.|||||++|+++....... ........+.+.+.+.+.. . ....+..... ....+... .... .
T Consensus 309 ~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (659)
T PLN03211 309 MNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL-------A--PKVKAAIEMSHFPQANARFVGSASTKEHRS 379 (659)
T ss_pred CCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc-------c--HHHHHHHhhhhhhcchhhhhhccccccccc
Confidence 9999999999875321100 0000000000101110000 0 0000000000 00000000 0000 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHH-HHHh
Q 006505 355 IPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLS-CTTE 433 (643)
Q Consensus 355 ~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~-~~~~ 433 (643)
....+.+|||+|+.+|++|++++ |||+.+..+|+++++++|+++|++||+++ +.++++|.|++||++++..+ .++.
T Consensus 380 ~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~ 456 (659)
T PLN03211 380 SDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFN 456 (659)
T ss_pred CCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11235678999999999999998 89999999999999999999999999985 67999999999999888654 4568
Q ss_pred HHHHHHHhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 006505 434 ALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVV 513 (643)
Q Consensus 434 ~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~ 513 (643)
+++.|+.||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++|
T Consensus 457 ~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g 536 (659)
T PLN03211 457 SVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLG 536 (659)
T ss_pred HHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC------Cccccc---
Q 006505 514 VCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS------DKCLQY--- 584 (643)
Q Consensus 514 ~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~------~~C~~~--- 584 (643)
+++|+++|+..+|+.+++++++++++||||+++ +||+||+|++|+||++|+|||++.|||++. ..|...
T Consensus 537 ~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~ 614 (659)
T PLN03211 537 LALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGS 614 (659)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccC
Confidence 999999999999999999999999999999997 799999999999999999999999999764 257532
Q ss_pred cCCccccchHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006505 585 IFGKCVVKGEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRFRC 633 (643)
Q Consensus 585 ~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 633 (643)
....|...++.++ ...+.|.|+++|++++++|++++|++|++++
T Consensus 615 ~~~~c~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 615 DRASCKFVEEDVA-----GQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred CCCCCccchhhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1234655555444 3456899999999999999999999998654
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-104 Score=974.02 Aligned_cols=577 Identities=23% Similarity=0.368 Sum_probs=492.5
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC----CCCccEEEECCCcCCc--hhhcccEEEEccCCCCC
Q 006505 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL----TPQSGSTFVNGSPIDK--AQFRKVSGYVTQRDTLF 128 (643)
Q Consensus 55 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~----~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~ 128 (643)
...+++|+|+|+++++||+++|+||||||||||||+|+|+. +|.+|+|.+||++++. ..+++.++||+|+|.++
T Consensus 71 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 71 TKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred CCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccC
Confidence 34578999999999999999999999999999999999996 4679999999998743 23566799999999999
Q ss_pred CCCCHHHHHHHHHHhcCC------CCHHHHHHH-HHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 129 PLLTVEETLMFSAKLRLR------LPQAQLRAR-VKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 129 ~~lTv~E~l~~~~~~~~~------~~~~~~~~~-v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+.+||+||+.|+++++.+ .++++..++ ++++++.+||++++|+++|++.+++|||||||||+||++|+++|++
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 999999999999887643 133443334 5779999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCCC
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLP 281 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p 281 (643)
++|||||+|||+.++.++++.|++++++.|+|||+++|||+.+++++||+|++|++|+++++|+++++.+||+++|++||
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p 310 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999866999999999997789999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhcchHHHHHHhhhcC---CccccchhhHHhhhh------hhcc-ccCc-chhHHHHHhhhhhhhHHhhh
Q 006505 282 MHVNVVEFAIESIDLIQEQRKIQQEN---QPRMMLPATQQQKKA------EEGE-SRSG-KFTLQQLFQQSKVIDEEIMN 350 (643)
Q Consensus 282 ~~~n~ad~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~ 350 (643)
++.|||||++++++..++........ ...+.+.+.+++... +... .... .....+.+.+..... ..
T Consensus 311 ~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 387 (1394)
T TIGR00956 311 DRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAK---QS 387 (1394)
T ss_pred CCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhh---hc
Confidence 99999999999987654332111000 111111111111100 0000 0000 000000000000000 00
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHH
Q 006505 351 VGIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSC 430 (643)
Q Consensus 351 ~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~ 430 (643)
+.....+++..|+|+|+++|++|++++.||||.++++|+++++++|+++|++||++++|++|+++|.|++||++++.++.
T Consensus 388 ~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~ 467 (1394)
T TIGR00956 388 KRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFS 467 (1394)
T ss_pred ccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 11223456889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHH
Q 006505 431 TTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTAN 510 (643)
Q Consensus 431 ~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~ 510 (643)
++..++.++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++
T Consensus 468 ~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~ 547 (1394)
T TIGR00956 468 SLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMS 547 (1394)
T ss_pred HHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 99899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC-Ccccc---c--
Q 006505 511 SVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS-DKCLQ---Y-- 584 (643)
Q Consensus 511 s~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~-~~C~~---~-- 584 (643)
++++++|+++||..+|+.+++++++++++|+||++|.++||+||+|++|+||++|+|||++.|||++. ..|.. .
T Consensus 548 ~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~ 627 (1394)
T TIGR00956 548 HLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGG 627 (1394)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 67852 0
Q ss_pred -------cCCcc----------ccchHHHHH-hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006505 585 -------IFGKC----------VVKGEDVLR-EAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCS 634 (643)
Q Consensus 585 -------~~~~c----------~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 634 (643)
....| .++|+++|+ .||++.++.|+|++||++|+++|++++++++.+.+.
T Consensus 628 ~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 628 GYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred CCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 12235 568999998 589999999999999999999999999999998763
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1e-102 Score=953.53 Aligned_cols=565 Identities=22% Similarity=0.369 Sum_probs=481.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCCcCCchhhcccEEEEccCCCCCCCCCH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 133 (643)
+++||+|+|+.++|||+++|+||||||||||||+|+|+++|+ +|+|.+||+++++...++.++||+|+|.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 578999999999999999999999999999999999999998 99999999988554446789999999999999999
Q ss_pred HHHHHHHHHhcCCC---------CHHHH------------------------HHHHHHHHHHcCChhhhhhhcCCCcCCC
Q 006505 134 EETLMFSAKLRLRL---------PQAQL------------------------RARVKSLVKELGLEHVAMARVGDDRVRG 180 (643)
Q Consensus 134 ~E~l~~~~~~~~~~---------~~~~~------------------------~~~v~~~l~~lgl~~~~~~~vg~~~~~~ 180 (643)
+|||.|+++++... +.+++ +..++++++.+||++++|+.+|++.+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999998765211 11111 1235789999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 181 LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|||+++|||+.+++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 99999999999999999999999999999999999999999999998866999999999998789999999999999999
Q ss_pred EEecChhHHHHHHHHcCCCCCCCCChhHHHHHhcchHHHHHHhhhcCCc-----cccchhhHHhhhhhhccccCcchhHH
Q 006505 261 LHHGTVDLLSVSLRMMGLQLPMHVNVVEFAIESIDLIQEQRKIQQENQP-----RMMLPATQQQKKAEEGESRSGKFTLQ 335 (643)
Q Consensus 261 v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (643)
+|+|+++++.+||+++|++||++.|||||++++++..+..........+ .+.+.+.+++.. ....+.
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~--------~~~~~~ 488 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFH--------VGMQLE 488 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcH--------HHHHHH
Confidence 9999999999999999999999999999999998864432211100000 001111111100 000000
Q ss_pred HHHhhhhhhhHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCh---hh
Q 006505 336 QLFQQSKVIDEEIMNVGIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDL---TG 412 (643)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~---~~ 412 (643)
+..... .++..........++|..|++.|++.|++|++++++||+.+++.|+++.+++|+++|++||+++.++ .+
T Consensus 489 ~~~~~~--~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~ 566 (1470)
T PLN03140 489 NELSVP--FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEED 566 (1470)
T ss_pred HHHhhh--hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchh
Confidence 000000 0000000111123568899999999999999999999999999999999999999999999997542 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccH
Q 006505 413 TEEKVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNL 492 (643)
Q Consensus 413 ~~~r~g~lf~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~ 492 (643)
.+.+.|++||++++.++.+++.++.++.||+||+|||++++|++++|++|++++|+|+.++.+++|++|+|||+||++++
T Consensus 567 ~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~ 646 (1470)
T PLN03140 567 GALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEA 646 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCch
Confidence 56788999999999889899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHH
Q 006505 493 MAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLI 572 (643)
Q Consensus 493 ~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~ 572 (643)
++||+|+++++++.++++++++++++++|++.+|+.+++++++++++|+||++|.++||+||+|++|+||++|||||+++
T Consensus 647 ~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~ 726 (1470)
T PLN03140 647 SRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAV 726 (1470)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC-C-ccccccCCccccchHHHHHhcCCCCCC--hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006505 573 NEFSDS-D-KCLQYIFGKCVVKGEDVLREAGYEEES--SWRNLVIMVGFILIYRFISYVILRFRC 633 (643)
Q Consensus 573 nef~~~-~-~C~~~~~~~c~~~G~~~L~~~g~~~~~--~w~~~~il~~~~~~~~~l~~~~L~~~~ 633 (643)
|||.+. . .|.. .+.+..+|+++|+.+|+..++ .|+|+++|++|+++|+++++++|++.+
T Consensus 727 NEf~~~~~~~~~~--~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 727 NEMFAPRWMNKMA--SDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HhccCccccCccc--CCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999775 1 1211 123457899999999998654 588999999999999999999999876
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=9.2e-101 Score=936.32 Aligned_cols=562 Identities=23% Similarity=0.401 Sum_probs=480.4
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCCcCCchhhcccEEEEccCCCCCCCCCH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP--QSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~--~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 133 (643)
+.+.+|+|||++++|||++||+||||||||||||+|+|+.++ .+|+|.+||++.....+++.+|||+|+|.+++.+||
T Consensus 891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 456799999999999999999999999999999999999874 589999999987655667789999999999999999
Q ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 006505 134 EETLMFSAKLRLRL--PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGL 211 (643)
Q Consensus 134 ~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgL 211 (643)
+|||.|++.++.+. +++++.++++++++.+||.+++|+.+|+..+++|||||||||+||++|+++|++|||||||+||
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 99999998776542 4556667899999999999999999998778999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-CeEEEecCh----hHHHHHHHHc-CCC-CCCCC
Q 006505 212 DSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-GSVLHHGTV----DLLSVSLRMM-GLQ-LPMHV 284 (643)
Q Consensus 212 D~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G~~----~~~~~~f~~~-g~~-~p~~~ 284 (643)
|+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|+|++ +++.+||+++ |.+ ||++.
T Consensus 1051 D~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~ 1129 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKY 1129 (1470)
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCC
Confidence 999999999999999875 999999999998668899999999996 899999996 5799999998 664 99999
Q ss_pred ChhHHHHHhcchHHHHHHhhhcCCccccchhhHHhhhhhhccccCcchhHHHHHhhhhhhhHHhhhcCCCCCCCCCCCHH
Q 006505 285 NVVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRDFANSRF 364 (643)
Q Consensus 285 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 364 (643)
|||||++|+++...+.. ....+.+.+++... .....+..++....... .......++++.|+|
T Consensus 1130 NPAd~~l~v~~~~~~~~-------~~~d~~~~~~~s~~--------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~ 1192 (1470)
T PLN03140 1130 NPATWMLEVSSLAAEVK-------LGIDFAEHYKSSSL--------YQRNKALVKELSTPPPG--ASDLYFATQYSQSTW 1192 (1470)
T ss_pred Cchhhhhhhhccccccc-------ccchHHHHHhccHH--------HHHHHHHHHHhccCCCC--ccccccCccccCCHH
Confidence 99999999976432110 00111122211100 00000000000000000 001112456889999
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHHHHHHHHHHHH-hHHHHHHH
Q 006505 365 KETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDL---TGTEEKVGLFAFILTFLLSCTT-EALPIFLQ 440 (643)
Q Consensus 365 ~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~---~~~~~r~g~lf~~~~~~~~~~~-~~~~~f~~ 440 (643)
+|+++|++|+++++||||.++.+|+++++++|+++|++||++++++ .++++|.|++|+++++..+..+ +.+|.|..
T Consensus 1193 ~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~ 1272 (1470)
T PLN03140 1193 GQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAV 1272 (1470)
T ss_pred HHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999865 5788899999999888777554 57899999
Q ss_pred hhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006505 441 EREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALV 520 (643)
Q Consensus 441 er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~ 520 (643)
||+||+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++|+++++++
T Consensus 1273 eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~ 1352 (1470)
T PLN03140 1273 ERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLT 1352 (1470)
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC-CccccccCCccccchHHHH-H
Q 006505 521 PNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS-DKCLQYIFGKCVVKGEDVL-R 598 (643)
Q Consensus 521 ~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~-~~C~~~~~~~c~~~G~~~L-~ 598 (643)
||..+|..+++++++++++|+||++|.++||+||+|++|+||++|++++++.|||++. .+|... .+....++++++ +
T Consensus 1353 p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~ 1431 (1470)
T PLN03140 1353 PNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVP-GGAPDPTIKWYIQD 1431 (1470)
T ss_pred CcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCC-CCCCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 344321 111123577774 7
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 006505 599 EAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQR 636 (643)
Q Consensus 599 ~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~ 636 (643)
.|||++++.|++++++++|+++|++++++++++.+..+
T Consensus 1432 ~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1432 HYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred hcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 89999999999999999999999999999998876554
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.4e-100 Score=931.92 Aligned_cols=571 Identities=25% Similarity=0.400 Sum_probs=485.1
Q ss_pred hhccccccccc----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCCcCCchhhcccE
Q 006505 46 SKLEEAADSDG----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT---PQSGSTFVNGSPIDKAQFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~~----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~---~~~G~I~~~g~~~~~~~~~~~i 118 (643)
++.+|++++++ .+.+|+|||+++++||++||+||||||||||||+|+|+.+ |++|+|.+||+++. ..+++.+
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i 838 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSI 838 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcce
Confidence 46788877763 4689999999999999999999999999999999999987 67899999999885 3567889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRL--PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
|||+|+|.+++.+||+||+.|++.++.+. ++++++++++++++.+||.+++|+.+|+. ..+|||||||||+||+||+
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHH
Confidence 99999999999999999999998877542 45666788999999999999999988753 3489999999999999999
Q ss_pred cCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC-eEEEecCh----hHHH
Q 006505 197 HDPK-VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG-SVLHHGTV----DLLS 270 (643)
Q Consensus 197 ~~p~-illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G-~iv~~G~~----~~~~ 270 (643)
.+|+ +|||||||+|||+.++..+++.|++++++ |+|||+++|||+..+++.||++++|++| +++++|++ +++.
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~ 996 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTII 996 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHH
Confidence 9997 99999999999999999999999999875 9999999999986677899999999987 99999997 5689
Q ss_pred HHHHHcCC-CCCCCCChhHHHHHhcchHHHHHHhhhcCCccccchhhHHhhhhhhccccCcchhHHHHHhhhhhhhHHhh
Q 006505 271 VSLRMMGL-QLPMHVNVVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIM 349 (643)
Q Consensus 271 ~~f~~~g~-~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (643)
+||++.|+ +||++.|||||++|+++....... ...+.+.+++.... ......++........ .+.
T Consensus 997 ~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~-------~~~~~~~~~~s~~~----~~~~~~~~~~~~~~~~-~~~-- 1062 (1394)
T TIGR00956 997 NYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA-------NQDYHEVWRNSSEY----QAVKNELDRLEAELSK-AED-- 1062 (1394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHhhcccccch-------hccHHHHHhcCHHH----HHHHHHHHHhhccccc-Ccc--
Confidence 99999996 999999999999999864221100 01111111110000 0000000000000000 000
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHH
Q 006505 350 NVGIEIPRDFANSRFKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLS 429 (643)
Q Consensus 350 ~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~ 429 (643)
.......+++++|+|+|+++|++|++++.||||.++++|+++++++|+++|++||++++++.|+|+|.|++|+.+.+..+
T Consensus 1063 ~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~ 1142 (1394)
T TIGR00956 1063 DNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNP 1142 (1394)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00011224688999999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred HHHhHHHHHHHhhHHH-HHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHH-------HHHHHHH
Q 006505 430 CTTEALPIFLQEREIL-MKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMA-------FFHFLLL 501 (643)
Q Consensus 430 ~~~~~~~~f~~er~v~-~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-------f~~f~~~ 501 (643)
.....+|.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.. |++|+++
T Consensus 1143 ~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~ 1222 (1394)
T TIGR00956 1143 LIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLL 1222 (1394)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHH
Confidence 6677899999999886 9999999999999999999999999999999999999999999988766 9999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC-Cc
Q 006505 502 IWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS-DK 580 (643)
Q Consensus 502 ~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~-~~ 580 (643)
++++.++++++|+++++++|+..+|+.+++++++++++|+||++|.++||+||+|++|+||++|++|+++.|||++. ..
T Consensus 1223 ~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~ 1302 (1394)
T TIGR00956 1223 STMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVT 1302 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 45
Q ss_pred cccc--------------------------------cCCcc---c-cchHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Q 006505 581 CLQY--------------------------------IFGKC---V-VKGEDVLREAGYEEESSWRNLVIMVGFILIYRFI 624 (643)
Q Consensus 581 C~~~--------------------------------~~~~c---~-~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l 624 (643)
|.+. ....| + .+|+++|+.+|++.++.|+|++++++|++++ ++
T Consensus 1303 C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~ 1381 (1394)
T TIGR00956 1303 CKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-II 1381 (1394)
T ss_pred cCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HH
Confidence 6431 01124 3 4999999999999999999999999999988 78
Q ss_pred HHHHHhhccc
Q 006505 625 SYVILRFRCS 634 (643)
Q Consensus 625 ~~~~L~~~~~ 634 (643)
++++|+++.+
T Consensus 1382 ~~~~l~~~~r 1391 (1394)
T TIGR00956 1382 ATVFFYWLAR 1391 (1394)
T ss_pred HHHhhheEEE
Confidence 8888887643
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.7e-96 Score=842.68 Aligned_cols=578 Identities=27% Similarity=0.437 Sum_probs=493.8
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCCcCCchhhcccEEEEccCCCCCCCCCH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 133 (643)
..++|+|+|+-++||+++.++||+||||||||++|+|..+.. .|+|.+||.+.+....++.++|++|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 347999999999999999999999999999999999987653 78999999998664447889999999999999999
Q ss_pred HHHHHHHHHhcCCC------CHHHHH-HHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 006505 134 EETLMFSAKLRLRL------PQAQLR-ARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206 (643)
Q Consensus 134 ~E~l~~~~~~~~~~------~~~~~~-~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDE 206 (643)
+|+|.|+++++.+. ++.+.. +..+.+++.+||++|+||+|||..+|++||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 99999999998762 222222 25789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCh
Q 006505 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMHVNV 286 (643)
Q Consensus 207 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~n~ 286 (643)
+|+|||+.++.++++.||++++..+.|++++.|||+.+++++||+|++|.+|+++|+||.+++.+||+++|+.||++.++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcchHHHHHHhhhcCCccccch-hhHHhhhhhhccccCcchhHHHHHhhhhhhhHHhhhcCCCCCCCCCCCHHH
Q 006505 287 VEFAIESIDLIQEQRKIQQENQPRMMLP-ATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRDFANSRFK 365 (643)
Q Consensus 287 ad~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 365 (643)
|||+.++++..+..+............. ....+. . .+......+....... .++.-..+.....++|..|+|.
T Consensus 367 ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~---~-~~s~~~~~l~~~l~~~--~~~~k~~~~al~s~~y~v~~~~ 440 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEY---F-LNSEDYAKLKKELSKP--YDKSKKHKAALVSSKYSVPYWE 440 (1391)
T ss_pred HHHHHHhhcCccccccccccCCCcccCCHHHHHHH---H-hcchhhHHHHHHhcch--hhhhhccchhhcCCceeccHHH
Confidence 9999999873222111110100000000 000000 0 0000000000000000 0000001112345778999999
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCC-CChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 006505 366 ETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVK-DDLTGTEEKVGLFAFILTFLLSCTTEALPIFLQEREI 444 (643)
Q Consensus 366 Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~-~~~~~~~~r~g~lf~~~~~~~~~~~~~~~~f~~er~v 444 (643)
|++.|++|.++.+.||..++..++++.+++|+++|++|++.+ ++..+.+.|.|++||++++.++.+++.++..++.|||
T Consensus 441 qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv 520 (1391)
T KOG0065|consen 441 QVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPV 520 (1391)
T ss_pred HHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcch
Confidence 999999999999999999999999999999999999999999 8888999999999999999999999999999999999
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Q 006505 445 LMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFI 524 (643)
Q Consensus 445 ~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~ 524 (643)
|+|||...+|+|+||.++.+++++|+.++.+++|.+|+||++||.+++++||.+++++++++.|++++++++++++++..
T Consensus 521 ~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~ 600 (1391)
T KOG0065|consen 521 FYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLS 600 (1391)
T ss_pred HHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC-Ccccccc---------CCcc-----
Q 006505 525 VGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS-DKCLQYI---------FGKC----- 589 (643)
Q Consensus 525 ~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~-~~C~~~~---------~~~c----- 589 (643)
+|+.++++.++.+.+++||+||.++||+||+|++|+||+.|++|++++|||+++ ..|.+.+ ...|
T Consensus 601 ~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~ 680 (1391)
T KOG0065|consen 601 IANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGA 680 (1391)
T ss_pred HHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhcc
Confidence 999999999999999999999999999999999999999999999999999998 6787321 1234
Q ss_pred -----ccchHHHHH-hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 006505 590 -----VVKGEDVLR-EAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQRSFRR 640 (643)
Q Consensus 590 -----~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~~~~ 640 (643)
.+.|.++++ +|++++.+.|+|++|++||.++|.++..+++.|.+.-.....
T Consensus 681 ~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~ 737 (1391)
T KOG0065|consen 681 TLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGA 737 (1391)
T ss_pred ccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 235666663 577889999999999999999999999999988775444443
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-96 Score=846.66 Aligned_cols=564 Identities=27% Similarity=0.450 Sum_probs=476.4
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC--ccEEEECCCcCCchhhcccEEEEccCCCCCCCCCH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ--SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~--~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 133 (643)
+.+++|+|||+.++||.++||||+||||||||||+|||+.... +|+|++||.|.+++.++|.+|||.|+|.|.+.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 6788999999999999999999999999999999999998765 99999999999878899999999999999999999
Q ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC-CEEEEeCCCCC
Q 006505 134 EETLMFSAKLRLRL--PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP-KVLILDEPTSG 210 (643)
Q Consensus 134 ~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p-~illlDEPtsg 210 (643)
+|.|.|+|.+|++. +.+++.+.|+++++.++|++++|..||+.. .|||.+||||++||.+|+.+| .||+|||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 99999999999875 667777899999999999999999999877 999999999999999999999 89999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-CeEEEecChhH----HHHHHHHcC-CCCCCCC
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-GSVLHHGTVDL----LSVSLRMMG-LQLPMHV 284 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G~~~~----~~~~f~~~g-~~~p~~~ 284 (643)
||+.++..+++.+|++++. |+||+||+|||+.++++.||++++|++ |++||.|+..+ +.+||++.| .+||+..
T Consensus 961 LDsqaA~~i~~~lrkla~t-GqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~ 1039 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADT-GQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDE 1039 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhc-CCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCC
Confidence 9999999999999999985 999999999999999999999999975 79999999865 567999986 8999999
Q ss_pred ChhHHHHHhcchHHHHHHhhhcCCccccchhhHHhhhhhhccccCcchhHHHHHhhhhhhhHHhhhcCCCCCCCCCCCHH
Q 006505 285 NVVEFAIESIDLIQEQRKIQQENQPRMMLPATQQQKKAEEGESRSGKFTLQQLFQQSKVIDEEIMNVGIEIPRDFANSRF 364 (643)
Q Consensus 285 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 364 (643)
|||||++|+++...+.. ....+.+.|++... ....+..++++.+.... .......+++|+.|+|
T Consensus 1040 NPA~~mLevi~~~~~~~-------~~~D~a~~w~~S~e----~k~~~e~v~~l~~~~~~-----~~~~~~~~~~fa~s~~ 1103 (1391)
T KOG0065|consen 1040 NPAEWMLEVIGAGAEAS-------LSVDFAEIWKNSEE----YKRNKELVKELSQPPPG-----FSTDLEFKTRFAQSLW 1103 (1391)
T ss_pred ChHHHHHhhcccccccc-------cCccHHHHHhccHH----HHHHHHHHHHHhcCCcc-----CCcccccccccchhHH
Confidence 99999999987543221 11112222221110 00000111111111111 0012234567999999
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHh-HHHHHHHhhH
Q 006505 365 KETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSCTTE-ALPIFLQERE 443 (643)
Q Consensus 365 ~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~~~~-~~~~f~~er~ 443 (643)
.|++.+++|++..+||||.++++|++..++.||++|+.||+.+++..|+||.+|+.|+.+++......+ ..+....||.
T Consensus 1104 ~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~ 1183 (1391)
T KOG0065|consen 1104 YQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERL 1183 (1391)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999887666655 4556667999
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Q 006505 444 ILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNF 523 (643)
Q Consensus 444 v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~ 523 (643)
+++||+++|+|++.||++|++++|+|+.++++++|.+++|+|+|+..++.+|++|++..+++.++.+++|+++.+++||.
T Consensus 1184 y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~ 1263 (1391)
T KOG0065|consen 1184 YEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNL 1263 (1391)
T ss_pred heeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCC-Ccccccc----CCccccc-hHHHH
Q 006505 524 IVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDS-DKCLQYI----FGKCVVK-GEDVL 597 (643)
Q Consensus 524 ~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~-~~C~~~~----~~~c~~~-G~~~L 597 (643)
++|..+.++++.++.+||||++|++.||.||+|+||+||+.|..++++..+++|. ..|...+ ++.|..+ |+.+.
T Consensus 1264 ~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~ 1343 (1391)
T KOG0065|consen 1264 QTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFME 1343 (1391)
T ss_pred hHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 5675421 1122222 33333
Q ss_pred HhcC----CCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 006505 598 REAG----YEEESSWRNLVIMVGFILIYRFISYVILRFRCSQRS 637 (643)
Q Consensus 598 ~~~g----~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 637 (643)
..+| +.++..-...++..++.+++..++.+..++.++.+.
T Consensus 1344 ~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1344 DFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 3456 554444444455555667777777777766554443
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-57 Score=434.62 Aligned_cols=231 Identities=32% Similarity=0.545 Sum_probs=210.8
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC----chhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID----KAQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~----~~~~~~~i~y 120 (643)
+++++|++|+||...+|+|||+++++||+++|+||||||||||||||+|+.+|++|+|.++|+++. ....|+.+|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 467899999999999999999999999999999999999999999999999999999999997663 2467899999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
|+|+..|||++||.||+.++...-.+.++++.++++.++|+++||.+.+ +.+|.+|||||||||+|||||+.+|+
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka-----~~yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKA-----DAYPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhh-----hhCccccCcHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999865545668899999999999999999888 45899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCC
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQL 280 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~ 280 (643)
++|+|||||+|||+...++.+.++++|++ |.|.|++||++.. +.+.+|||+.|++|+++..|+++++. ..
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~~~f--------~~ 226 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPEEFF--------DN 226 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHHHHh--------cC
Confidence 99999999999999999999999999986 9999999999986 88999999999999999999998874 34
Q ss_pred CCCCChhHHH
Q 006505 281 PMHVNVVEFA 290 (643)
Q Consensus 281 p~~~n~ad~~ 290 (643)
|.+....+|+
T Consensus 227 p~~~R~~~FL 236 (240)
T COG1126 227 PKSERTRQFL 236 (240)
T ss_pred CCCHHHHHHH
Confidence 5544455554
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-53 Score=413.00 Aligned_cols=222 Identities=27% Similarity=0.515 Sum_probs=207.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
+++++|++|.|+++.+++|+|++|++||+++++|||||||||+||+|.++.+|++|+|++||+++.. .++|+.||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 3568899999999999999999999999999999999999999999999999999999999999854 5789999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
-|...|||++||.||+.+-..+. ++++++.+++++++|+.+||+... ..+++|++|||||+|||.+||||+.+|++
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~-~w~k~~i~~r~~ELl~lvgL~p~~---~~~RyP~eLSGGQQQRVGv~RALAadP~i 156 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLL-GWDKERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVGVARALAADPPI 156 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHhCCCHHH---HhhcCchhcCcchhhHHHHHHHHhcCCCe
Confidence 99999999999999999877664 568888999999999999997522 23679999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+|+|||+++|||.++.++.+.++++.++.|+|||++|||.+ |+.+++|||.+|++|+++..++|+++..
T Consensus 157 lLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 157 LLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred EeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999997 7999999999999999999999999863
No 12
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-52 Score=409.94 Aligned_cols=224 Identities=36% Similarity=0.547 Sum_probs=208.7
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRK 116 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~ 116 (643)
.++++++++++++|++.|++|||++|++||+++|+||||||||||||+|.|+++|++|+|.++|+++.. .+.++
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 356889999999999999999999999999999999999999999999999999999999999998743 25688
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
++|+++|+..||..+||+||+.|..+-....+++..++.+..-|+.+||.... .+.+|.+||||||||++||||++
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~----~~~~PsELSGGM~KRvaLARAia 161 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA----ADLYPSELSGGMRKRVALARAIA 161 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh----hhhCchhhcchHHHHHHHHHHHh
Confidence 99999999999999999999999887666668888899999999999998652 25589999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
.+|+++++||||+||||.++..+-++++++.++.|.|++++|||.+ +++.++|++++|.+|+++..|+++++.+
T Consensus 162 ldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 162 LDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred cCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999999999999998 5999999999999999999999999853
No 13
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-53 Score=424.00 Aligned_cols=218 Identities=33% Similarity=0.513 Sum_probs=203.4
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhh
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQF 114 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~ 114 (643)
+++++++|.|.. ..+|+|||++|++||+++|+|+||||||||+|+|.++.+|++|+|.+||+++.. ...
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 567788888875 479999999999999999999999999999999999999999999999987743 457
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
|++||+++|+..|+...||.||+.|+.++.. .++++.++++.++|+.+||++.+ +.+|.+|||||||||+||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~dk~-----~~yP~qLSGGQKQRVaIARA 155 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSDKA-----DRYPAQLSGGQKQRVAIARA 155 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChhhh-----ccCchhcCcchhhHHHHHHH
Confidence 8899999999999999999999999998864 67899999999999999999877 55899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|+|||+|||||+|||.+...|+++|+++.++.|.||+++||+++. +.++||||.+|++|++++.|+..++.
T Consensus 156 La~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 156 LANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999999999999999999999999984 88999999999999999999998874
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.5e-51 Score=428.62 Aligned_cols=223 Identities=39% Similarity=0.643 Sum_probs=204.3
Q ss_pred hhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEc
Q 006505 46 SKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVT 122 (643)
Q Consensus 46 ~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~ 122 (643)
+.+++++++|+ .+.+|+||||++++||++|++||||||||||+|+|+|+.+|++|+|.++|.+... .+.++++||+|
T Consensus 5 i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred eeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 45789999999 6999999999999999999999999999999999999999999999999998754 56788999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+||+|||.|.+.++... .+..+++++++++.+||.+.. ++++++||+|||||++||+||+++|+++
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~~~-----~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLS-KEEAEERIEELLELFGLEDKA-----NKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHcCCchhh-----CcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999987543 255677899999999998744 4467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRM 275 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 275 (643)
||||||+||||.++.++.++|++++++.|+||++|||+++ ++.++||+|++|++|++++.|+++++...+..
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 9999999999999999999999999874489999999998 69999999999999999999999998776553
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1e-51 Score=416.19 Aligned_cols=220 Identities=32% Similarity=0.519 Sum_probs=200.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
+++++|++.+|+++++|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|+++|+++.. +++.+.+|||
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 3568899999999999999999999999999999999999999999999999999999999998854 5678899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRL---PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~---~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
||.....+.+||+|-+.++...+... ..+++++.+++.|+.+|+.+.+++ .+.+|||||||||.||+||+++
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----~~~~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----PVDELSGGERQRVLIARALAQE 156 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----cccccChhHHHHHHHHHHHhcC
Confidence 99998888899999999875432221 345556689999999999999855 6679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|+||||||.||...+.+++++++++++++|+|||+++||++. +.++||++++|++|+++..|+|+++.
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999998889999999999985 88999999999999999999998765
No 16
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-52 Score=434.24 Aligned_cols=234 Identities=32% Similarity=0.511 Sum_probs=215.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEcc
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQ 123 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q 123 (643)
.+++++++|.|++..+|+|+|++|++||+++++||||||||||||+|||+..|++|+|.++|++++. ...+|.+|+|+|
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeec
Confidence 4678999999999999999999999999999999999999999999999999999999999999976 456788999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
+..|||+|||+||+.|+.+++....+++.+++++++++.++|++.. ++++.+|||||||||+|||||+.+|++||
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----DRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----hhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 9999999999999999998655456677889999999999999977 55789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHHcCCCCCCC
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRMMGLQLPMH 283 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~ 283 (643)
||||.|+||..-+.++...|+++.++.|.|.|++|||.+ |+..++|||.+|++|++...|+|+++. ..|..
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~eiY--------~~P~~ 230 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEIY--------ERPAT 230 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHHh--------hCcch
Confidence 999999999999999999999999999999999999997 799999999999999999999999984 34666
Q ss_pred CChhHHHHH
Q 006505 284 VNVVEFAIE 292 (643)
Q Consensus 284 ~n~ad~~~~ 292 (643)
.-.|||+-+
T Consensus 231 ~fVA~FiG~ 239 (352)
T COG3842 231 RFVADFIGE 239 (352)
T ss_pred HHHHHHhCc
Confidence 666777643
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-51 Score=427.65 Aligned_cols=219 Identities=32% Similarity=0.515 Sum_probs=206.0
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~ 124 (643)
++++|+.|.||+..+|+|+|+++++||+++|+||||||||||||+|||+.+|++|+|.++|++++. ...+|.+++|+|+
T Consensus 4 i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~ 83 (338)
T COG3839 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQN 83 (338)
T ss_pred EEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCC
Confidence 568999999998779999999999999999999999999999999999999999999999999976 4456889999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
..|||+|||+||+.|+.+.+ +.++++.+++|+++.+.|+|++..| ++|++|||||||||+|||||+++|+++||
T Consensus 84 yALyPhmtV~~Niaf~Lk~~-~~~k~ei~~rV~eva~~L~l~~lL~-----r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 84 YALYPHMTVYENIAFGLKLR-GVPKAEIDKRVKEVAKLLGLEHLLN-----RKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred ccccCCCcHHHHhhhhhhhC-CCchHHHHHHHHHHHHHcCChhHHh-----cCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999876 3478889999999999999999984 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||.|+||+..+..+...|+++.++.|.|+|.+|||.. |+..++|||.+|++|++...|+|.++.+
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999989999999999986 7999999999999999999999999854
No 18
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-51 Score=403.88 Aligned_cols=205 Identities=35% Similarity=0.532 Sum_probs=190.7
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccC
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR 124 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~ 124 (643)
.+.++++.+.|+...+|+|+|++|++||+++|+||||||||||||+|+|+.+|++|+|.++|+++ ......++||+|+
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v--~~p~~~~~~vFQ~ 80 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV--TGPGPDIGYVFQE 80 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc--CCCCCCEEEEecc
Confidence 35688999999999999999999999999999999999999999999999999999999999988 3346779999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.|+|.+||+||+.++...+. .++++.+++++++|+.+||.+.. +.+|++|||||||||+|||||+.+|++|+|
T Consensus 81 ~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~~~-----~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 81 DALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAGFE-----DKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred CcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcchh-----hcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999987653 45677778999999999999887 558999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG 258 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 258 (643)
|||+++||+.|+.++.+.|.++.++.++||+++|||.+ |+..++|||++|.++
T Consensus 155 DEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 155 DEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999988999999999998 688999999999984
No 19
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.4e-50 Score=398.79 Aligned_cols=207 Identities=33% Similarity=0.600 Sum_probs=183.8
Q ss_pred hcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhh-c
Q 006505 47 KLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQF-R 115 (643)
Q Consensus 47 ~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~-~ 115 (643)
+++++.+.|+. ..+|+++|++|++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ..+ +
T Consensus 3 ~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~ 82 (226)
T COG1136 3 ELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRR 82 (226)
T ss_pred EEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHH
Confidence 46677776654 379999999999999999999999999999999999999999999999988743 223 4
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.+|||+|+..|+|.+||.||+.+++.+... +..+.+++++++++.+||.+..+ +.+|.+|||||||||+|||||
T Consensus 83 ~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~-~~~~~~~~~~~l~~~lgl~~~~~----~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 83 KKIGFVFQNFNLLPDLTVLENVELPLLIAGK-SAGRRKRAAEELLEVLGLEDRLL----KKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HhEEEECccCCCCCCCCHHHHHHhHHHHcCC-ChhHHHHHHHHHHHhcCChhhhc----cCCchhcCHHHHHHHHHHHHH
Confidence 6799999999999999999999998766532 33356778999999999987653 247899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
+.+|++++.||||.+||+.++.+++++|++++++.|+|||++|||+. +.+.|||++.|.+|++
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999888999999999984 7889999999999994
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-50 Score=395.35 Aligned_cols=222 Identities=31% Similarity=0.500 Sum_probs=201.2
Q ss_pred hhhcccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhccc
Q 006505 45 LSKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKV 117 (643)
Q Consensus 45 ~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~ 117 (643)
+++++|+++.| +++++|+|||++|++||+++|+||||||||||||+|+|+.+|++|+|.+||.++.. +++|++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 46789999999 89999999999999999999999999999999999999999999999999987743 467889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRL-------RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~-------~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
+||++|+..|.+.+||.||+..+..-+. +...++.++++-+.|+++|+.+.+.++ ..+|||||+|||+
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----a~~LSGGQQQRVa 157 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----ASTLSGGQQQRVA 157 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----hccCCcchhHHHH
Confidence 9999999999999999999987643221 223355677888999999999888664 4699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||||+++|+++|.|||+++|||.++.++|+.|++++++.|.|||++.||.+. +.++||||+-|++|+++|+||++++.
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecCCcEEEeCChhhhh
Confidence 99999999999999999999999999999999999999999999999999986 88999999999999999999999876
Q ss_pred HH
Q 006505 271 VS 272 (643)
Q Consensus 271 ~~ 272 (643)
+.
T Consensus 237 ~~ 238 (258)
T COG3638 237 DE 238 (258)
T ss_pred HH
Confidence 54
No 21
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-50 Score=384.15 Aligned_cols=220 Identities=31% Similarity=0.530 Sum_probs=204.2
Q ss_pred hhhcccccccccccc-eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRR-VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~-iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv 121 (643)
++.+.+++|+|+.++ +++||||+++.||+++|+|||||||||+||+|++++.|++|+|++||.+..+ ...|+++|.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 356788999999987 9999999999999999999999999999999999999999999999998743 5689999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+.+..++..||++|||.|.+++. +....+.+++++++.+.|+|.++.|+++| ++|.|+||||+|||||+++|++
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~-~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLN-GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCe
Confidence 98889999999999999999886 45677888999999999999999988665 9999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
++|||||||||..+...+.+.++++.++ |++||++||.++ |+..+||+|++|++|++++.|+++++...
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~e-gr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNE-GRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcC-CcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999875 999999999997 79999999999999999999999887654
No 22
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-50 Score=405.76 Aligned_cols=220 Identities=32% Similarity=0.528 Sum_probs=203.7
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCC---cCCc-hhhcccEEEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS---PIDK-AQFRKVSGYV 121 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~---~~~~-~~~~~~i~yv 121 (643)
+.++++++.++...+++|||++|+.||++|++|||||||||||++|||+..|+.|.|.+||+ +.+. ..-.++||||
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEE
Confidence 56788899999999999999999999999999999999999999999999999999999999 5544 2335789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
+|+..+|++|||.+|+.|+.+.+.. .++.+.+.+++++|+.+.|++.. +++|.+|||||||||++||||+.+|+
T Consensus 83 FQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-----~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 83 FQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-----DRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred EechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-----hcCchhcChHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999987632 36778889999999999999877 56899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+||||||+++||..-+.++.+.|+++.++.|.|++++|||++ ++.+++|||++|++|+|...|+++++.+
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999988999999999998 7999999999999999999999999853
No 23
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-50 Score=401.82 Aligned_cols=218 Identities=30% Similarity=0.545 Sum_probs=193.0
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccC
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR 124 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~ 124 (643)
+++++|++..|+++++|+|||+++++|++++|+||||||||||+|+|.|+++|.+|+|.++|++.....-+.+||||||.
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~ 83 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQK 83 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcc
Confidence 46789999999976899999999999999999999999999999999999999999999999987654445789999995
Q ss_pred C---CCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 125 D---TLFPLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 125 ~---~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
. .-|| +||+|.+..+...+.+ ...+++++.++++|+.+|+.+.+|+ .+.+|||||+|||-|||||+++
T Consensus 84 ~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----~i~~LSGGQ~QRV~lARAL~~~ 157 (254)
T COG1121 84 SSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----QIGELSGGQKQRVLLARALAQN 157 (254)
T ss_pred cccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----cccccCcHHHHHHHHHHHhccC
Confidence 3 4466 5999999887433322 2334457899999999999999865 5569999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|++|+|||||+|+|+.++..+.++|++++++ |+||++++||++ .+.++||+|++| ++++++.|++++..+
T Consensus 158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~-~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLG-LVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcH-HhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 9999999999999999999999999999987 999999999998 599999999999 578889999988754
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3e-48 Score=408.59 Aligned_cols=221 Identities=31% Similarity=0.489 Sum_probs=200.1
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYV 121 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv 121 (643)
.++++++++++|+++.+|+|||+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.+||+
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999998753 3467889999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
||++.+++.+||+||+.+.+.++ +.+.++.+++++++++.++|.+..++ .+++||||||||++||+||+++|++
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~aL~~~P~l 159 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVFGRYF-GLSAAAARALVPPLLEFAKLENKADA-----KVGELSGGMKRRLTLARALVNDPDV 159 (306)
T ss_pred eccCcCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchHhcC-----chhhCCHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999876654 23445556788999999999877754 5679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||+|++|++|++++.|+++++.+.
T Consensus 160 llLDEPt~gLD~~~~~~l~~~l~~l~~~-g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 160 LVLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999764 999999999997 68899999999999999999999988643
No 25
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-48 Score=414.91 Aligned_cols=218 Identities=28% Similarity=0.483 Sum_probs=198.9
Q ss_pred hhcccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEcc
Q 006505 46 SKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q 123 (643)
+++++++++| +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.+|||+|
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 83 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQ 83 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 5688999999 78899999999999999999999999999999999999999999999999998753 234578999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
++.+||++||+||+.|+.+.+ ..++++.+++++++++.+||++.. ++++++|||||||||+|||||+.+|++||
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~-----~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 84 NYALYPHMSVRENMAYGLKIR-GMPKAEIEERVAEAARILELEPLL-----DRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred CccccCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhHh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999987643 235566677899999999998877 44778999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||||++||+.++..+.+.|+++.++.|.|+|++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999998867999999999997 689999999999999999999999874
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-48 Score=392.28 Aligned_cols=218 Identities=33% Similarity=0.537 Sum_probs=193.2
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcccEEE
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVSGY 120 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~i~y 120 (643)
+++|++++|+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..+++.++|
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 81 (235)
T cd03261 2 ELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGM 81 (235)
T ss_pred eEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEE
Confidence 46788899988899999999999999999999999999999999999999999999999988643 235678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++|++.+++.+||+||+.+........+.++.++++.++++.+|+.+.. ++.+++|||||||||+||+||+.+|+
T Consensus 82 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 82 LFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----DLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred EccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998754322224455567789999999998766 44678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++|||||+|||+.++..+++.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999999998755899999999997 588899999999999999999987653
No 27
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.5e-48 Score=413.85 Aligned_cols=220 Identities=27% Similarity=0.444 Sum_probs=201.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEcc
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQ 123 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q 123 (643)
+++++|++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.+|||+|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 4678999999999899999999999999999999999999999999999999999999999998753 234678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
+..+||++||+||+.|+.+.+ +.++++.+++++++++.+||++.. ++++++|||||||||+|||||+.+|+++|
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~l~L~~~~-----~~~~~~LSgGq~QRvaLARaL~~~P~llL 157 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNR-GMGRAEVAERVAELLDLVGLPGSE-----RKYPGQLSGGQQQRVALARALATSPGLLL 157 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCchh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999987643 235566778899999999999877 44778999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||||++||+.++.++.+.|+++.++.|.|+|++|||++ ++.+++|++++|++|+++..|+++++.+
T Consensus 158 LDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999998877999999999997 6899999999999999999999988753
No 28
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-48 Score=412.56 Aligned_cols=220 Identities=25% Similarity=0.460 Sum_probs=201.3
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEc
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVT 122 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~ 122 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++||+
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vf 84 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVF 84 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 35778999999998899999999999999999999999999999999999999999999999998754 23357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|+..+||++||+||+.|+.+.+ +.++++.+++++++++.+||.+.. ++++++|||||||||+|||||+.+|++|
T Consensus 85 Q~~~lfp~~tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~~gl~~~~-----~r~~~~LSgGq~QRVaLARaL~~~P~lL 158 (351)
T PRK11432 85 QSYALFPHMSLGENVGYGLKML-GVPKEERKQRVKEALELVDLAGFE-----DRYVDQISGGQQQRVALARALILKPKVL 158 (351)
T ss_pred CCcccCCCCCHHHHHHHHHhHc-CCCHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999987654 235566778999999999998876 4578899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||||||+|||+.++.++.+.|+++.++.|+|+|++|||++ ++.+++|+|++|++|+++..|+++++.
T Consensus 159 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 159 LFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999998877999999999997 689999999999999999999999874
No 29
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=7e-48 Score=409.97 Aligned_cols=218 Identities=28% Similarity=0.455 Sum_probs=196.5
Q ss_pred hhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h---hhc
Q 006505 46 SKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A---QFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~---~~~ 115 (643)
++++|++++|+. +.+|+||||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. . ..+
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 567899999852 479999999999999999999999999999999999999999999999998743 1 246
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.+||++|+..+++.+||+||+.++.... +.++++.++++.++++.+||.+.. ++++.+|||||||||+|||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~v~e~l~~vgL~~~~-----~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEIKRKVTELLALVGLGDKH-----DSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhh-----hCChhhCCHHHHHHHHHHHHH
Confidence 78999999999999999999999976543 235566778899999999998876 457789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++|++|+|||||++||+.++..++++|++++++.|.|||++||+++ .+.++||++++|++|++++.|+++++.
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998866999999999997 588999999999999999999998874
No 30
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.8e-48 Score=365.77 Aligned_cols=212 Identities=30% Similarity=0.512 Sum_probs=193.7
Q ss_pred hhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcccE
Q 006505 46 SKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~i 118 (643)
++.++++|+|++ +++|+||||++++||++-|+||||||||||||+|.+..+|+.|+|.+||++++. .-+|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 567888999965 459999999999999999999999999999999999999999999999999854 2468999
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|+|+||..|.++.||+||+.|+.+.. +.+.++.++++.++|+.+||.+.+ +..|.+|||||||||+||||++.+
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~-G~~~~~i~~rV~~~L~~VgL~~k~-----~~lP~~LSGGEQQRvaIARAiV~~ 155 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVI-GKPPREIRRRVSEVLDLVGLKHKA-----RALPSQLSGGEQQRVAIARAIVNQ 155 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhcc-CCCHHHHHHHHHHHHHHhccchhh-----hcCccccCchHHHHHHHHHHHccC
Confidence 99999999999999999999998775 457788899999999999999877 447899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
|++|+.||||.+|||..+.+|++++.++.+ .|.||++.|||.+. +..+-.|++.|++|+++....
T Consensus 156 P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~l-v~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 156 PAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLEL-VNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHH-HHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999987 49999999999874 667778999999999987654
No 31
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-48 Score=380.52 Aligned_cols=219 Identities=33% Similarity=0.492 Sum_probs=196.4
Q ss_pred hhhcccccccccccc----eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch----hhcc
Q 006505 45 LSKLEEAADSDGVRR----VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA----QFRK 116 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~----iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~----~~~~ 116 (643)
+++++|+++.|+.+. +|+|||+++++||.++|+|+||||||||.++|+|+.+|++|+|.++|++..+. .+++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 567899999999888 99999999999999999999999999999999999999999999999887542 4678
Q ss_pred cEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 117 VSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 117 ~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
.+.+||||+ .+.|..||++.|.-+.+.. +.++ .++++.++++.+||.+.. .+++|.+||||||||++||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~~~~--~~~~i~~~L~~VgL~~~~----l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPH-GLSK--SQQRIAELLDQVGLPPSF----LDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccC-CccH--HHHHHHHHHHHcCCCHHH----HhcCchhcChhHHHHHHHHHH
Confidence 899999997 5899999999998876542 2222 334599999999997532 256889999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+.+|++|+||||||+||+..+.+|+++|.++.+++|.|.|++|||.+. +..+||||++|++|++++.++.+++.+
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999999999999999985 889999999999999999999988764
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1e-47 Score=413.45 Aligned_cols=222 Identities=29% Similarity=0.473 Sum_probs=201.5
Q ss_pred hhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEE
Q 006505 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGY 120 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~y 120 (643)
..++++++|++++|+++++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 3446789999999998899999999999999999999999999999999999999999999999998753 234578999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
|+|++.+||++||+||+.|+.+.+ ..++++.+++++++++.+||++..+ +++.+|||||||||+|||||+.+|+
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEEFAQ-----RKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987543 2345566778999999999988774 4678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|||||||+|||+.++..+.+.|++++++.|.|+|++|||++ ++.+++|+|++|++|+++..|+++++.
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999998877999999999997 689999999999999999999998874
No 33
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-48 Score=369.77 Aligned_cols=220 Identities=28% Similarity=0.513 Sum_probs=201.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
.+.++++.|+|+++++++|||+++++||+++++|||||||||.+.++.|+.+|++|+|.+||.+++. .+.|..+||
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccc
Confidence 3567899999999999999999999999999999999999999999999999999999999999976 234566899
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRL-PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
+||++..|..|||+||+....+.+... .+.+.+.+++++|++|++.|++++ +...||||||+|+.|||||+.+|
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~-----~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS-----KAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcC-----cccccccchHHHHHHHHHHhcCC
Confidence 999999999999999999888876533 334556678999999999999854 66799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+.++||||++|.||.+..+|.++++.+++. |..|++|-|+.. |...++||.+++++|+++.+|+++++.+
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r-giGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhC-CceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999875 999999999998 6899999999999999999999999863
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.9e-47 Score=408.36 Aligned_cols=219 Identities=26% Similarity=0.443 Sum_probs=199.5
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCc--cEEEECCCcCCc-hhhcccEEEEc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS--GSTFVNGSPIDK-AQFRKVSGYVT 122 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~--G~I~~~g~~~~~-~~~~~~i~yv~ 122 (643)
+++++++++|+.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.. ...++.++||+
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf 85 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEE
Confidence 568899999998899999999999999999999999999999999999999999 999999998753 23457899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|+..+||++||+||+.|+.+.+ +.++++.+++++++++.+||++.. ++++++|||||||||+|||||+.+|++|
T Consensus 86 Q~~~l~p~~tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~-----~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 86 QNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGDAA-----AHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred CCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCchh-----hCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999987644 235566677899999999998877 4477899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETR-GRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||||||+|||+.++.++.+.|+++.++. |+|+|++|||++ ++..++|+|++|++|+++..|+++++.+
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999998765 899999999997 6899999999999999999999998753
No 35
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3e-47 Score=407.50 Aligned_cols=219 Identities=26% Similarity=0.455 Sum_probs=198.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~ 124 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++||+|+
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~ 82 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQH 82 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecC
Confidence 467899999998899999999999999999999999999999999999999999999999998753 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 125 DTLFPLLTVEETLMFSAKLRL---RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+.++|++||+||+.|+..... ..++++.+++++++++.++|++.. ++++.+|||||||||+|||||+.+|++
T Consensus 83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----DRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----hCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999865421 224556677899999999998776 457789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||||||+|||+.++.++.+.|++++++.|+|+|++|||++ ++.+++|+|++|++|++++.|+++++.
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999998867999999999997 689999999999999999999998874
No 36
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1e-47 Score=359.19 Aligned_cols=216 Identities=28% Similarity=0.466 Sum_probs=193.9
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~ 124 (643)
+.++++..+|+..+ =.++++|++||++||+||||||||||||+|+|...|.+|+|.+||++.+. ....+-+++++|+
T Consensus 2 l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQE 79 (231)
T COG3840 2 LALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE 79 (231)
T ss_pred ccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhc
Confidence 45667777777554 36889999999999999999999999999999999999999999999865 3456779999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
..+|.+|||.+|+.++....+.. .++.+++++.++..+||..+. ++.|.+|||||||||++||+|+.+-+|++|
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL-~a~~r~~v~~aa~~vGl~~~~-----~RLP~~LSGGqRQRvALARclvR~~PilLL 153 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKL-NAEQREKVEAAAAQVGLAGFL-----KRLPGELSGGQRQRVALARCLVREQPILLL 153 (231)
T ss_pred cccchhhhhhhhhcccCCccccc-CHHHHHHHHHHHHHhChhhHh-----hhCccccCchHHHHHHHHHHHhccCCeEEe
Confidence 99999999999999886544333 355678899999999999887 447889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||+|+|||.-+.++..++.+++++++.|++++||+|+ ++..++|+++++++|+|.+.|+.++..
T Consensus 154 DEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 154 DEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred cCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999999999999999999999999998 699999999999999999999988764
No 37
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=5e-47 Score=403.85 Aligned_cols=221 Identities=30% Similarity=0.466 Sum_probs=199.6
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYV 121 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv 121 (643)
.+++++|++++|+++.+|+||||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.+||+
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v 119 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVV 119 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEE
Confidence 46889999999999999999999999999999999999999999999999999999999999998743 3467789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
||++.+++.+||+||+.+....+ +.+.++.+++++++++.++|.+..++ ++++||||||||++||+||+++|++
T Consensus 120 ~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~-----~~~~LS~G~kqrv~lA~aL~~~P~l 193 (340)
T PRK13536 120 PQFDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADA-----RVSDLSGGMKRRLTLARALINDPQL 193 (340)
T ss_pred eCCccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhCC-----ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999766544 23444556678899999999877644 5679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
+||||||+|||+.++.++.+.|++++++ |+|||++||+++ ++.++||+|++|++|++++.|+++++.+.
T Consensus 194 LiLDEPt~gLD~~~r~~l~~~l~~l~~~-g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 194 LILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999874 999999999997 68899999999999999999999988653
No 38
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-48 Score=369.15 Aligned_cols=232 Identities=24% Similarity=0.405 Sum_probs=204.7
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-----SGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-----~G~I~~~g~~~~~-----~~~ 114 (643)
..+++++...||.+.+|+|||+.|++++++|+|||||||||||||++....... +|+|.++|+++.. .++
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence 467889999999999999999999999999999999999999999999987654 7999999998843 468
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
|+++|+|+|.+.-|| +|++||+.|+.++..-.+ ++.++.|+..|+...|.+....+. ++...+||||||||++||||
T Consensus 87 Rr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL-~~sa~~LSGGQQQRLcIARa 163 (253)
T COG1117 87 RRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRL-HKSALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHh-hCCccCCChhHHHHHHHHHH
Confidence 999999999999999 799999999998764334 778889999999999864432222 56778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 274 (643)
|+.+|+|||||||||+|||.+..+|-+++.++++ .-|||++||.+. .+.+..|+..++..|+++++|+.+++.
T Consensus 164 lAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~iF---- 236 (253)
T COG1117 164 LAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDKIF---- 236 (253)
T ss_pred HhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHhhh----
Confidence 9999999999999999999999999999999985 689999999997 589999999999999999999998874
Q ss_pred HcCCCCCCCCChhHHH
Q 006505 275 MMGLQLPMHVNVVEFA 290 (643)
Q Consensus 275 ~~g~~~p~~~n~ad~~ 290 (643)
..|.+.-+.||+
T Consensus 237 ----~~P~~~~TedYi 248 (253)
T COG1117 237 ----TNPKHKRTEDYI 248 (253)
T ss_pred ----cCccHHHHHHHh
Confidence 346666666664
No 39
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-47 Score=407.97 Aligned_cols=222 Identities=27% Similarity=0.456 Sum_probs=201.9
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEE
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYV 121 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv 121 (643)
.+++++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.+|||
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 346789999999998899999999999999999999999999999999999999999999999998753 3356789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+|++.+||++||.||+.|+.+.+ ..++++.+++++++++.++|.+.. ++++.+|||||||||+|||||+.+|++
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~~~-----~~~~~~LSgGq~QRVaLARAL~~~P~l 170 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQEFA-----KRKPHQLSGGQRQRVALARSLAKRPKL 170 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987643 235566778899999999998776 457889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||||||++||+.++..+.+.|+++.++.|.|+|++|||++ ++..++|++++|++|+++..|+++++.+
T Consensus 171 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 171 LLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 99999999999999999999999998777999999999997 6899999999999999999999998753
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-47 Score=379.24 Aligned_cols=216 Identities=31% Similarity=0.499 Sum_probs=192.2
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEccC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQR 124 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~ 124 (643)
+++|++++|+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ...++.++|++|+
T Consensus 2 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (220)
T cd03265 2 EVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQD 81 (220)
T ss_pred EEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCC
Confidence 46888999988899999999999999999999999999999999999999999999999987642 3456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.+++.+||+||+.+....+ +...++.+++++++++.+|+++..+ .++..||||||||++||+||+.+|++++|
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr~~la~al~~~p~llll 155 (220)
T cd03265 82 LSVDDELTGWENLYIHARLY-GVPGAERRERIDELLDFVGLLEAAD-----RLVKTYSGGMRRRLEIARSLVHRPEVLFL 155 (220)
T ss_pred ccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999876543 2234445667899999999987664 46789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 156 DEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999998755899999999997 58889999999999999999987653
No 41
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-47 Score=382.72 Aligned_cols=221 Identities=30% Similarity=0.492 Sum_probs=199.5
Q ss_pred hhhccccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC----chhhcccEE
Q 006505 45 LSKLEEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID----KAQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~----~~~~~~~i~ 119 (643)
++.+++++..|++. .+|+|+|+++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++. ...+++.+|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 35677888888765 9999999999999999999999999999999999999999999999999865 356889999
Q ss_pred EEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 120 YVTQRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 120 yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
||+|++ ..+-.-||.|.+.|+..- .+.+.++.+++++++++.+|+.+.+ ++.+..|||||||||+||.+|+.+
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n-~g~~~~e~~~rv~~~l~~vgl~~~~-----~r~p~~LSGGqkqRvaIA~vLa~~ 156 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLEN-LGLPREEIEERVAEALELVGLEELL-----DRPPFNLSGGQKQRVAIAGVLAMG 156 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhh-cCCCHHHHHHHHHHHHHHcCchhhc-----cCCccccCCcceeeHHhhHHHHcC
Confidence 999996 234445999999998753 4567778899999999999999887 558899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
|++|+|||||+|||+..+.++++.++++.++.|+|||++|||.+ .+.+++|++++|++|+++++|++.++.+.
T Consensus 157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 157 PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999877899999999998 58999999999999999999998877653
No 42
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-47 Score=375.65 Aligned_cols=222 Identities=28% Similarity=0.469 Sum_probs=201.8
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~ 119 (643)
+++++++++++||.-.+++|||+++++||+++|+||||||||||+|+|+|.++|++|+|.++|++++. +..|..++
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 35678999999999999999999999999999999999999999999999999999999999999865 23466789
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcC--------CC---CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRL--------RL---PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~--------~~---~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqR 188 (643)
--+|...+|++|||.||+..++..+. +. ..++..+++.++|+.+||.+.+|+ ..++||+|||||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~-----~A~~LsyG~qR~ 157 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR-----PAGNLSYGQQRR 157 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc-----hhhcCChhHhHH
Confidence 99999999999999999998865331 11 345667889999999999999865 556999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 189 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
+.|||||+++|++|+||||.+||.+..+.++.+.|++++++.|.||+++.||++. ++++||||+||+.|+++.+|+|++
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccCCcCcccCCHHH
Confidence 9999999999999999999999999999999999999998778999999999985 999999999999999999999999
Q ss_pred HHH
Q 006505 269 LSV 271 (643)
Q Consensus 269 ~~~ 271 (643)
+.+
T Consensus 237 V~~ 239 (250)
T COG0411 237 VRN 239 (250)
T ss_pred Hhc
Confidence 753
No 43
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-47 Score=377.45 Aligned_cols=211 Identities=34% Similarity=0.582 Sum_probs=186.7
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
++++++++|+++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 81 (213)
T cd03259 2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDY 81 (213)
T ss_pred eeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCch
Confidence 46788899988899999999999999999999999999999999999999999999999998743 23456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|++||+.+..... ....+..+++++++++.+|+.+..+ +.+..||||||||++||++|+.+|++++||
T Consensus 82 ~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~la~al~~~p~~lllD 155 (213)
T cd03259 82 ALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEGLLN-----RYPHELSGGQQQRVALARALAREPSLLLLD 155 (213)
T ss_pred hhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999998875432 1234445567899999999987664 466799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 156 EPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999998755899999999997 588999999999999998765
No 44
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.2e-46 Score=396.05 Aligned_cols=212 Identities=32% Similarity=0.511 Sum_probs=190.2
Q ss_pred ccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEccCCCCCCC
Q 006505 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQRDTLFPL 130 (643)
Q Consensus 53 ~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~ 130 (643)
++|+++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.+||++|++.+++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 35677889999999999999999999999999999999999999999999999988743 3456789999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 006505 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSG 210 (643)
Q Consensus 131 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsg 210 (643)
+||+||+.+.+..+ +.+.++.+++++++++.+||.+..+ ++++.|||||||||+||+||+.+|++|+|||||+|
T Consensus 81 ~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 81 LTGRENLEMMGRLY-GLPKDEAEERAEELLELFELGEAAD-----RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred CcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHhC-----CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 99999999876654 2344555678899999999987764 46679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|+++++.+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~-g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEE-GVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999875 999999999997 58899999999999999999999887654
No 45
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=405.26 Aligned_cols=218 Identities=29% Similarity=0.475 Sum_probs=197.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~ 124 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++||+|+
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~ 83 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCC
Confidence 568899999998899999999999999999999999999999999999999999999999998753 2235679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
..+++.+||+||+.|+...+ +.+.++.+++++++++.+||++.. ++++.+|||||||||+|||||+.+|++|||
T Consensus 84 ~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~~~-----~~~~~~LSgGq~QRvaLAraL~~~P~lLLL 157 (369)
T PRK11000 84 YALYPHLSVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAHLL-----DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (369)
T ss_pred cccCCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhhh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999986543 234555667899999999998766 446789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||||+|||+.++..+.+.|++++++.|.|+|++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999998766899999999997 588999999999999999999998874
No 46
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-47 Score=368.03 Aligned_cols=220 Identities=29% Similarity=0.480 Sum_probs=194.4
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~ 119 (643)
+++++++++..||..++|++||+++++||+++|+||||||||||||+|+|+.++.+|+|.++|++++. +..|..++
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 36789999999999999999999999999999999999999999999999999999999999999964 34677899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-ChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG-LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-l~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
||||...+||.|||+|||..++..+.. ++..+..++++.+.|- |.+.+ ++....|||||||.++|||||+++
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lker~-----~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKERR-----NQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccc--cccccccHHHHHHHChhHHHHh-----cCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999999999999988765422 1222222677777773 55555 446679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|++|+|||||.||-|.-..+|.+.+++++++.|.||+++.++... +.+++||.++|.+|+++++|+.+++..
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999999999999999999999999999998778999999999874 889999999999999999999998854
No 47
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=400.88 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=195.0
Q ss_pred hhccccccccc----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhc
Q 006505 46 SKLEEAADSDG----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~ 115 (643)
++++|++++|+ .+++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..++
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 46788999997 4689999999999999999999999999999999999999999999999998743 1246
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++||+|++.+++.+||+||+.+....+ +.++++.+++++++++.+||.+..+ +++++|||||||||+||+||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGLSDKAD-----RYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHH
Confidence 78999999999999999999999876543 2345556678899999999987664 46789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998766899999999997 588899999999999999999988774
No 48
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-46 Score=381.64 Aligned_cols=218 Identities=28% Similarity=0.478 Sum_probs=191.8
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~ 124 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|++|+
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 82 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQH 82 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecC
Confidence 467899999988899999999999999999999999999999999999999999999999988743 2235679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+.+++.+||+||+.+....+.. ...++..++++++++.+|+.+..+ +.+.+||||||||++||+||+.+|++
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 83 YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----RYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred CcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999987543211 123344567889999999987664 46679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 99999999999999999999999998755899999999997 58889999999999999999998775
No 49
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.3e-46 Score=400.64 Aligned_cols=211 Identities=27% Similarity=0.452 Sum_probs=191.8
Q ss_pred ccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhh----cccEEEEccCC
Q 006505 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQF----RKVSGYVTQRD 125 (643)
Q Consensus 53 ~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~----~~~i~yv~Q~~ 125 (643)
|+|+.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ... ++.++||+|++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46788889999999999999999999999999999999999999999999999998753 223 67899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.++|++||+||+.|..... +.++++..+++.++++.+||++.. ++++..|||||||||+|||||+.+|++||||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~-~~~~~~~~~~~~~~l~~vgL~~~~-----~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL-GWPEQERKEKALELLKLVGLEEYE-----HRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCchhh-----hCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999987653 345666778899999999998766 4577899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||+|||+.++.++.+.|+++.++.|+|||++|||++ ++.+++|+|++|++|+++..|+++++.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999998766999999999997 588999999999999999999998875
No 50
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.2e-46 Score=394.37 Aligned_cols=219 Identities=31% Similarity=0.470 Sum_probs=195.5
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEc
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVT 122 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~ 122 (643)
++++++++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.+||++
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 4678999999998899999999999999999999999999999999999999999999999988643 34567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+||+||+.+..... +.+.++.+++++++++.+++.+..++ .+++||||||||++||+||+.+|++|
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~ll 157 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADV-----RVALLSGGMKRRLTLARALINDPQLL 157 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998755433 23344455678899999999877644 66799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|+++++.+
T Consensus 158 lLDEPt~gLD~~~~~~l~~~l~~~~~~-g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 158 ILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999874 999999999997 5889999999999999999999988754
No 51
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-46 Score=378.90 Aligned_cols=218 Identities=30% Similarity=0.476 Sum_probs=192.9
Q ss_pred hhccccccccccc----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhc
Q 006505 46 SKLEEAADSDGVR----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~~----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~ 115 (643)
+++++++++|+++ ++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 4578899999876 89999999999999999999999999999999999999999999999998743 1236
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++|++|++.+++.+|++||+.+....+ ....++..+.++++++.+|+.+..+ +.+..||||||||++||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al 155 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIA-GVPKAEIEERVLELLELVGLEDKAD-----AYPAQLSGGQKQRVGIARAL 155 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhhhh-----cChhhCCHHHHHHHHHHHHH
Confidence 78999999999999999999998875543 2234445667899999999987664 46789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999998755899999999997 588899999999999999999887653
No 52
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.7e-46 Score=379.66 Aligned_cols=217 Identities=33% Similarity=0.539 Sum_probs=190.6
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh-hcccEEEEc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ-FRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~-~~~~i~yv~ 122 (643)
++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .. .++.++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 81 (236)
T cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTF 81 (236)
T ss_pred eeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEe
Confidence 46788889988889999999999999999999999999999999999999999999999988743 12 245699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRL---------PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~---------~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|++.+++.+||+||+.+........ ..++..++++++++.+|+++.. +..+++||||||||++||+
T Consensus 82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA-----DRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchh-----hCChhhCCHHHHHHHHHHH
Confidence 9999999999999999876432111 1344556789999999998765 4467899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 99999999999999999999999999999999987 5999999999997 588899999999999999999987763
No 53
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-46 Score=374.74 Aligned_cols=212 Identities=33% Similarity=0.540 Sum_probs=187.9
Q ss_pred hcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 47 KLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
++++++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++. ..++.++|++
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~--~~~~~i~~v~ 79 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT--GPGPDRGYVF 79 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc--cccCcEEEEe
Confidence 46788888877 78999999999999999999999999999999999999999999999998874 2457799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+|++||+.+....+ ..+.+...++++++++.+|+++..+ +.+.+||||||||++||+||+.+|+++
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~la~al~~~p~ll 153 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQ-GVPKAEARERAEELLELVGLSGFEN-----AYPHQLSGGMRQRVALARALAVDPDVL 153 (220)
T ss_pred cccccccCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhh-----CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999876543 2233445567899999999987664 466899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe--CCeEEEecChh
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA--NGSVLHHGTVD 267 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 267 (643)
+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|+ +|++++.++++
T Consensus 154 lLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 154 LLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999997656899999999997 5788999999999 79999988764
No 54
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-46 Score=380.06 Aligned_cols=218 Identities=33% Similarity=0.523 Sum_probs=189.9
Q ss_pred hcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcccEE
Q 006505 47 KLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVSG 119 (643)
Q Consensus 47 ~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~i~ 119 (643)
++++++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 2 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 81 (241)
T cd03256 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIG 81 (241)
T ss_pred EEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccE
Confidence 46788889887 789999999999999999999999999999999999999999999999988742 23567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLR-------LRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~-------~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
|++|++.+++.+||+||+.+..... .....+...+++.++++.+++.+.. ++.+.+|||||||||+||
T Consensus 82 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 82 MIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----YQRADQLSGGQQQRVAIA 156 (241)
T ss_pred EEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----CCCcccCCHHHHHHHHHH
Confidence 9999999999999999998754211 0111233456788999999998765 446789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999998756899999999997 588899999999999999999988763
No 55
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.7e-46 Score=372.84 Aligned_cols=211 Identities=29% Similarity=0.539 Sum_probs=187.4
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~ 81 (213)
T cd03301 2 ELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNY 81 (213)
T ss_pred EEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecCh
Confidence 46788889988899999999999999999999999999999999999999999999999988743 22346799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|++||+.+....+ ....++.+++++++++.+|+.+..+ ++++.||||||||++||++|+.+|++++||
T Consensus 82 ~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 82 ALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEHLLD-----RKPKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred hhccCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHHh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999999875543 2234555667899999999987664 467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999998756899999999997 588899999999999999876
No 56
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5.2e-46 Score=376.62 Aligned_cols=216 Identities=31% Similarity=0.576 Sum_probs=191.0
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh-hcccEEEEc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ-FRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~-~~~~i~yv~ 122 (643)
++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. .. .++.++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (232)
T cd03218 2 RAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLP 81 (232)
T ss_pred eEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEec
Confidence 46788999988899999999999999999999999999999999999999999999999987643 12 345799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+||+||+.+....+ ....++..++++++++.+|+++..+ +.++.||||||||++||++|+.+|++|
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~ll 155 (232)
T cd03218 82 QEASIFRKLTVEENILAVLEIR-GLSKKEREEKLEELLEEFHITHLRK-----SKASSLSGGERRRVEIARALATNPKFL 155 (232)
T ss_pred CCccccccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999865433 2233445567889999999987664 467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 llDEPt~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 156 LLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999999999999999874 899999999997 588999999999999999999987653
No 57
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.7e-46 Score=384.84 Aligned_cols=221 Identities=24% Similarity=0.440 Sum_probs=194.6
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhccc
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKV 117 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~ 117 (643)
++++++|++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 45788999999998899999999999999999999999999999999999999999999999987742 124567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
++|++|++.+++.+||.||+.+........+.++.++++.++++.+|+.+..+ ..+..||||||||++||++|+.
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----LMPSELSGGMARRAALARAIAL 160 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999886543212234445567889999999987664 4678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|++++|||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++|++++.|+++++.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999998755899999999997 588999999999999999999987753
No 58
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.3e-46 Score=378.08 Aligned_cols=218 Identities=27% Similarity=0.460 Sum_probs=192.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhcccEEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~y 120 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 457889999988899999999999999999999999999999999999999999999999988743 234678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++|++.+++.+||+||+.+..........++.++++.++++.+|+++..+ +.++.||||||||++||++|+.+|+
T Consensus 82 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 82 VFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----HYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----cChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999886421112234455667899999999987664 4678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999864 899999999997 578899999999999999999988753
No 59
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.5e-46 Score=373.88 Aligned_cols=207 Identities=28% Similarity=0.458 Sum_probs=182.2
Q ss_pred hhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhccc
Q 006505 46 SKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKV 117 (643)
Q Consensus 46 ~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~ 117 (643)
++++|++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ..+++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 457888888854 469999999999999999999999999999999999999999999999987632 125678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+|+.+..+ +.+.+||||||||++||+||+.
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~laral~~ 155 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRII-GVPPRDANERVSAALEKVGLEGKAH-----ALPMQLSGGEQQRVAIARAIVH 155 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999876543 2234445677899999999987664 4668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ .+.+++|++++|++|++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 156 KPPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999764 899999999997 57789999999999974
No 60
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=386.19 Aligned_cols=229 Identities=31% Similarity=0.481 Sum_probs=195.4
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhc
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~ 115 (643)
+++++++++|+. +++|+|||+++++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. ...+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 457888888864 479999999999999999999999999999999999999999999999998743 2456
Q ss_pred ccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh--hhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 116 KVSGYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE--HVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 116 ~~i~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~--~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
+.+|||+|++. .+...||+||+.+..... +.++++..++++++++.+||. +.. +++++.||||||||++||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~~LSgGq~qrv~iA 156 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYEDYK-----DKSPFELSGGQKRRVAIA 156 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchhhc-----cCCcccCCHHHHHHHHHH
Confidence 78999999963 333469999999875432 335566677899999999996 444 557789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH-
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV- 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~- 271 (643)
+||+.+|++|+|||||+|||+.++.++.++|++++++.|+|||++|||++ ++.++||+|++|++|++++.|+++++.+
T Consensus 157 raL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 157 GVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999998766999999999997 5788999999999999999999988753
Q ss_pred --HHHHcCCCCC
Q 006505 272 --SLRMMGLQLP 281 (643)
Q Consensus 272 --~f~~~g~~~p 281 (643)
.+...|+..|
T Consensus 236 ~~~~~~~~~~~~ 247 (287)
T PRK13637 236 VETLESIGLAVP 247 (287)
T ss_pred HHHHHHcCCCCC
Confidence 2334455444
No 61
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=6.9e-46 Score=390.15 Aligned_cols=218 Identities=31% Similarity=0.547 Sum_probs=196.5
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q 123 (643)
+++++++++|+++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.+||+||
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q 82 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecC
Confidence 467899999999999999999999999999999999999999999999999999999999988743 345678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
++.+++.+||.||+.+.+.++ +.+.++..++++++++.+||.+..++ .++.||||||||++||+||+++|++|+
T Consensus 83 ~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lli 156 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAGIY-GMKGQLLKQRVEEMIELVGLRPEQHK-----KIGQLSKGYRQRVGLAQALIHDPKVLI 156 (301)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999877654 22445556678999999999987744 567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|++++.|+++++...
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999963 799999999997 58999999999999999999999987653
No 62
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.3e-46 Score=376.09 Aligned_cols=215 Identities=26% Similarity=0.456 Sum_probs=187.0
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC-----CCCccEEEECCCcCCc-----hhhcc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL-----TPQSGSTFVNGSPIDK-----AQFRK 116 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~-----~~~~G~I~~~g~~~~~-----~~~~~ 116 (643)
+++|++++|+++++|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.. ..+++
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (227)
T cd03260 2 ELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRR 81 (227)
T ss_pred EEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHh
Confidence 4678889998889999999999999999999999999999999999999 8999999999988642 23567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
.++|++|++.++ .+||+||+.+....+.....++.+++++++++.+|+.+..++.+ .+.+||||||||++||++|+
T Consensus 82 ~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~~~LSgG~~qrv~la~al~ 157 (227)
T cd03260 82 RVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRL---HALGLSGGQQQRLCLARALA 157 (227)
T ss_pred hEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccC---CcccCCHHHHHHHHHHHHHh
Confidence 899999999888 78999999987654321122334567889999999987654421 05899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+++|++++|++|++++.|++++
T Consensus 158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999763 89999999997 5888999999999999999998765
No 63
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.6e-46 Score=379.64 Aligned_cols=218 Identities=30% Similarity=0.469 Sum_probs=189.4
Q ss_pred hhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcccE
Q 006505 46 SKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~i 118 (643)
+.+++++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 45788888997 7789999999999999999999999999999999999999999999999988642 1246789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLR-------LRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~-------~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
+|++|++.+++.+||+||+.+..... .....++.++++.++++.+|+.+.. ++.+..||||||||++|
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----YQRADQLSGGQQQRVAI 156 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----cCCcccCCHHHHHHHHH
Confidence 99999999999999999998643210 0011233456788999999998766 44678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
|+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+.+++|++++|++|++++.|+++++
T Consensus 157 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999999997655899999999997 47889999999999999999998765
No 64
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-46 Score=370.05 Aligned_cols=209 Identities=33% Similarity=0.594 Sum_probs=186.6
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDT 126 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~ 126 (643)
++++++++|+++.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..++.++|++|++.
T Consensus 2 ~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~ 80 (210)
T cd03269 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-AARNRIGYLPEERG 80 (210)
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-HHHccEEEeccCCc
Confidence 46788889988889999999999999999999999999999999999999999999999998754 45678999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 006505 127 LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206 (643)
Q Consensus 127 l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDE 206 (643)
+++.+|++||+.+....+ ..+.++.+++++++++.+|+++..++ .+.+||||||||++||++|+.+|++++|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~~lllDE 154 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLK-GLKKEEARRRIDEWLERLELSEYANK-----RVEELSKGNQQKVQFIAAVIHDPELLILDE 154 (210)
T ss_pred CCcCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCChHHHhC-----cHhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999998876543 22344556778999999999876644 667999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 207 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 155 P~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 155 PFSGLDPVNVELLKDVIRELARA-GKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999874 899999999997 478899999999999998764
No 65
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=9e-46 Score=371.88 Aligned_cols=214 Identities=35% Similarity=0.597 Sum_probs=189.6
Q ss_pred hcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEc
Q 006505 47 KLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~ 122 (643)
++++++++|++ +++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++
T Consensus 2 ~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~ 81 (220)
T cd03263 2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCP 81 (220)
T ss_pred EEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEec
Confidence 46788888876 789999999999999999999999999999999999999999999999998743 34567799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+|++||+.+....+ +.+.++.+++++++++.++|.+..++ .+.+||||||||++||++|+.+|+++
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~ll 155 (220)
T cd03263 82 QFDALFDELTVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTDKANK-----RARTLSGGMKRKLSLAIALIGGPSVL 155 (220)
T ss_pred CcCCccccCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHhC-----hhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999876543 22344455678999999999876644 56799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|++++.|+++++
T Consensus 156 llDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 156 LLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999975 599999999997 47889999999999999999988764
No 66
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=9.2e-46 Score=379.10 Aligned_cols=219 Identities=28% Similarity=0.470 Sum_probs=192.8
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----------hh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----------AQ 113 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----------~~ 113 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 4678899999988899999999999999999999999999999999999999999999999987642 23
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
.++.++|++|++.+++.+|++||+.++.........++..+++.++++.+|+.+.. +..+++||||||||++||+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LS~Gq~qrv~la~ 157 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----TSYPRRLSGGQQQRVAIAR 157 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----hCChhhCChHHHHHHHHHH
Confidence 46789999999999998999999987543211223445566788999999998765 3467899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 158 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999864 899999999997 588899999999999999999987763
No 67
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=8.2e-46 Score=371.67 Aligned_cols=211 Identities=33% Similarity=0.566 Sum_probs=187.5
Q ss_pred hhccccccccccc----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEE
Q 006505 46 SKLEEAADSDGVR----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~~~----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~ 119 (643)
+++++++++|+++ ++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 4578888899876 79999999999999999999999999999999999999999999999988743 34567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|++|++.+++.+||+||+.+....+ ....++..++++++++.+|+.+..++ .++.||||||||++||+||+.+|
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGMEELLDR-----RVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHhh-----hhhhcCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999998865543 22344556788999999999877644 56799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999764 899999999997 588899999999999998754
No 68
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-45 Score=376.60 Aligned_cols=217 Identities=29% Similarity=0.568 Sum_probs=192.0
Q ss_pred hcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEc
Q 006505 47 KLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~ 122 (643)
++++++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 2 ~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (242)
T cd03295 2 EFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVI 81 (242)
T ss_pred EEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEc
Confidence 46788888887 789999999999999999999999999999999999999999999999988643 34567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh--hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH--VAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~--~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
|++.+++.+||+||+.+....+ ....++..+++.++++.+|+.+ .. ++.+++||||||||++||++|+.+|+
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~-----~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 82 QQIGLFPHMTVEENIALVPKLL-KWPKEKIRERADELLALVGLDPAEFA-----DRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred cCccccCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcHHHH-----hcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999875543 2234455667899999999975 44 44678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999998755899999999997 588999999999999999999887653
No 69
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=385.34 Aligned_cols=232 Identities=27% Similarity=0.412 Sum_probs=198.4
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hh
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQ 113 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~ 113 (643)
+++++++++|+. +.+|+|||+++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 457888888863 259999999999999999999999999999999999999999999999998741 24
Q ss_pred hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 114 FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 114 ~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
.++.+|||+|++ .+++ .||.||+.|+.... ..++++.++++.++++.+||. +.. ++.++.||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADEFW-----EKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhccc-chHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChhhc-----cCCcccCCHHHHHHHH
Confidence 577899999986 5565 59999999876432 234566677899999999995 344 4577899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||+|++|++|++++.|+++++.
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999874 999999999997 578899999999999999999999875
Q ss_pred H---HHHHcCCCCCCCCCh
Q 006505 271 V---SLRMMGLQLPMHVNV 286 (643)
Q Consensus 271 ~---~f~~~g~~~p~~~n~ 286 (643)
+ .+...|+.+|.....
T Consensus 233 ~~~~~~~~~~~~~p~~~~~ 251 (288)
T PRK13643 233 QEVDFLKAHELGVPKATHF 251 (288)
T ss_pred cCHHHHHHcCCCCChHHHH
Confidence 3 345667776654333
No 70
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.1e-46 Score=371.72 Aligned_cols=206 Identities=33% Similarity=0.555 Sum_probs=180.3
Q ss_pred hcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch------h-hc
Q 006505 47 KLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA------Q-FR 115 (643)
Q Consensus 47 ~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~------~-~~ 115 (643)
++++++++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... . .+
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred eEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHh
Confidence 46788888876 7899999999999999999999999999999999999999999999999887431 1 34
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+|+++..+ +.++.||||||||++||+||
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLA-GVPKKERRERAEELLERVGLGDRLN-----HYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhh-----cChhhcCHHHHHHHHHHHHH
Confidence 67999999999999999999999876543 2233444567899999999987664 46689999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999987458999999999973 54 9999999999974
No 71
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-45 Score=380.72 Aligned_cols=217 Identities=27% Similarity=0.406 Sum_probs=192.1
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh----hcccEE
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ----FRKVSG 119 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~----~~~~i~ 119 (643)
.++++.++|+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. .. .++.++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 46788999999999999999999999999999999999999999999999999999999987642 11 235799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|++|++.+++.+||+||+.+..... ....++..++++++++.+||.+..++ .+++||||||||++||+||+.+|
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrv~lAral~~~p 179 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQ-GVPRAEREERAAEALELVGLEGWEHK-----YPDELSGGMQQRVGLARALAVDP 179 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhC-----CcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999875433 22344455678899999999876644 66799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 180 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 180 DILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999998655899999999997 588999999999999999999987764
No 72
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=8.1e-46 Score=400.98 Aligned_cols=219 Identities=26% Similarity=0.439 Sum_probs=195.3
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
+++++|++++|+++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. .+.++.+|||
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 4678899999999999999999999999999999999999999999999999999999999988743 4567889999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLR---LRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+|++.+++.+||+||+.++.... .....++.+++++++++.+|+.+..+ +++++||||||||++|||||+++
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----RPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHHcC
Confidence 99999988999999998864321 11112345678999999999987774 46789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|||||||+|||+.++.+++++|+++++ .|+|||+++|+++ ++.++||++++|++|++++.|+++++.
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999987 4899999999998 588999999999999999999998753
No 73
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.7e-45 Score=372.62 Aligned_cols=218 Identities=34% Similarity=0.521 Sum_probs=190.7
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q 123 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...++.++|++|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q 81 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQ 81 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCC
Confidence 457889999988899999999999999999999999999999999999999999999999987643 223457999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
++.+++.+|++||+.+....+ +.+.++..+++.++++.+|+++..+ +.+..||||||||++||++|+.+|++++
T Consensus 82 ~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrl~laral~~~p~lll 155 (236)
T TIGR03864 82 QPTLDLDLSVRQNLRYHAALH-GLSRAEARERIAALLARLGLAERAD-----DKVRELNGGHRRRVEIARALLHRPALLL 155 (236)
T ss_pred CCCCcccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998888999999998765443 2234445567889999999987664 4667999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|++++.|+++++.+
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999986558999999999974 54 599999999999999999877643
No 74
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-45 Score=384.66 Aligned_cols=228 Identities=29% Similarity=0.469 Sum_probs=194.9
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hh
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQ 113 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~ 113 (643)
+++++++++|+. +++|+|||+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 457888888864 569999999999999999999999999999999999999999999999998731 24
Q ss_pred hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 114 FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 114 ~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
.++.+|||+|++ .+++ .||+||+.|+.... ..+.++.+++++++++.+||. +.. +++++.|||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF-GVSEEDAKQKAREMIELVGLPEELL-----ARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCChhhh-----hCCcccCCHHHHHHHH
Confidence 567899999986 4554 69999999875432 234555667899999999996 445 4467899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++ ++.+++|+|++|++|++++.|+++++.
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999998766999999999997 588999999999999999999998864
Q ss_pred H---HHHHcCCCCC
Q 006505 271 V---SLRMMGLQLP 281 (643)
Q Consensus 271 ~---~f~~~g~~~p 281 (643)
+ .+...+..+|
T Consensus 235 ~~~~~~~~~~~~~~ 248 (290)
T PRK13634 235 ADPDELEAIGLDLP 248 (290)
T ss_pred cCHHHHHHCCCCCC
Confidence 2 2344455444
No 75
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.4e-45 Score=389.78 Aligned_cols=221 Identities=24% Similarity=0.389 Sum_probs=195.1
Q ss_pred hhhhcccccccccc-------------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC
Q 006505 44 ELSKLEEAADSDGV-------------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID 110 (643)
Q Consensus 44 ~~~~~~~~~~~~~~-------------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~ 110 (643)
++++++|+++.|+. ..+++|||+++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46788999888852 56999999999999999999999999999999999999999999999999874
Q ss_pred c------hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCC
Q 006505 111 K------AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRL-RLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRG 180 (643)
Q Consensus 111 ~------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~ 180 (643)
. ..+++.++||+|++ .++|.+||.||+.+...... ..++++.++++.++++.+||. +.. ++++.+
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~-----~~~p~~ 161 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI-----NRYPHE 161 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh-----cCCccc
Confidence 3 13567899999997 68899999999998765432 235566677889999999994 333 557899
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 181 ISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 181 LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++.++.|.|+|++|||++ .+.+++|+|++|++|++
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHA 240 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998766999999999997 47889999999999999
Q ss_pred EEecChhHHH
Q 006505 261 LHHGTVDLLS 270 (643)
Q Consensus 261 v~~G~~~~~~ 270 (643)
++.|+++++.
T Consensus 241 ve~g~~~~i~ 250 (331)
T PRK15079 241 VELGTYDEVY 250 (331)
T ss_pred EEEcCHHHHH
Confidence 9999988765
No 76
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.1e-46 Score=363.20 Aligned_cols=220 Identities=30% Similarity=0.579 Sum_probs=206.3
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+.+++++|+||.+.+++|+||+++||+|.+++|||||||||.+|+|.|+++|++|+|.++|.+++. ..+.+|||.|++.
T Consensus 3 L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~-~~~~rIGyLPEER 81 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ-EIKNRIGYLPEER 81 (300)
T ss_pred eEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh-hhhhhcccChhhh
Confidence 568999999999999999999999999999999999999999999999999999999999999854 4577899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.|+|.+||.|.|.|.+.++ +.++++.+++++.+|+++++.... .+++++||.|++|++.+..+++++|++++||
T Consensus 82 GLy~k~tv~dql~yla~Lk-Gm~~~e~~~~~~~wLer~~i~~~~-----~~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELK-GMPKAEIQKKLQAWLERLEIVGKK-----TKKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred ccCccCcHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhccccccc-----cchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 9999999999999999987 568889999999999999998766 3467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHH
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 274 (643)
||+|||||.+...+-+.+.+++++ |.|||+|+|.++ .+.++||++++|++|+.|.+|+.+++...|.
T Consensus 156 EPFSGLDPVN~elLk~~I~~lk~~-GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 156 EPFSGLDPVNVELLKDAIFELKEE-GATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCccCCChhhHHHHHHHHHHHHhc-CCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999885 999999999998 5999999999999999999999999987553
No 77
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-45 Score=374.72 Aligned_cols=219 Identities=28% Similarity=0.497 Sum_probs=192.8
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 4568899999988899999999999999999999999999999999999999999999999988743 224577999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++|++.+++.+||.||+.+....+.....++.+++++++++.+|+.+.. +..+++||||||||++||++|+.+|+
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLR-----DSMGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHh-----hcchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999987654321123344556789999999998765 44678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999999999999976 4999999999997 588999999999999999999988763
No 78
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-45 Score=379.99 Aligned_cols=229 Identities=28% Similarity=0.398 Sum_probs=194.9
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
++++++++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 467899999995 5679999999999999999999999999999999999999999999999998743 345678999
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++|++. .++..||.||+.|..... ..+.++.++++.++++.+||.+.. ++.+.+||||||||++||+||+.+|
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~LSgG~~qrv~laraL~~~p 157 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNM-GLDKDEVERRVEEALKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGVLAMDP 157 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHHHh-----cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999963 445579999999865432 234445567789999999998766 4467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH--HHHHHcC
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS--VSLRMMG 277 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~--~~f~~~g 277 (643)
++|+|||||+|||+.++.++.+.|++++++ |+|||++||+++ .+.++||++++|++|++++.|+++++. +.+...|
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 235 (274)
T PRK13647 158 DVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAG 235 (274)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHhcCHHHHHHcC
Confidence 999999999999999999999999999875 999999999997 477899999999999999999987542 2233445
Q ss_pred CCCC
Q 006505 278 LQLP 281 (643)
Q Consensus 278 ~~~p 281 (643)
+.+|
T Consensus 236 ~~~~ 239 (274)
T PRK13647 236 LRLP 239 (274)
T ss_pred CCCC
Confidence 4433
No 79
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.6e-45 Score=370.45 Aligned_cols=214 Identities=31% Similarity=0.497 Sum_probs=186.9
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh-hcccEEEEc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ-FRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~-~~~~i~yv~ 122 (643)
++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .. .++.++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (222)
T cd03224 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVP 81 (222)
T ss_pred EEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEec
Confidence 46788889988889999999999999999999999999999999999999999999999987643 12 356799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL-GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
|++.+++.+|++||+.+...... ..+.++++.++++.+ ++.+.. +..++.||||||||++||++|+.+|++
T Consensus 82 q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 82 EGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKERR-----KQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred cccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhhhh-----hCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998754331 223345677888888 466555 346789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999987 4899999999997 588999999999999999999887653
No 80
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.7e-45 Score=366.82 Aligned_cols=206 Identities=30% Similarity=0.546 Sum_probs=183.8
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
++++++++|+++++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (208)
T cd03268 2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAP 81 (208)
T ss_pred EEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCC
Confidence 46788889988899999999999999999999999999999999999999999999999998743 34567799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+||+||+.+....+. . .+++++++++.+++++..++ .+++|||||||||+||++|+.+|++++||
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~-~----~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllD 151 (208)
T cd03268 82 GFYPNLTARENLRLLARLLG-I----RKKRIDEVLDVVGLKDSAKK-----KVKGFSLGMKQRLGIALALLGNPDLLILD 151 (208)
T ss_pred ccCccCcHHHHHHHHHHhcC-C----cHHHHHHHHHHcCCHHHHhh-----hHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99999999999988764321 1 23567889999999877644 56799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.+++|++++|++|++++.|
T Consensus 152 EPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 152 EPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999987 5899999999997 477899999999999998765
No 81
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-45 Score=380.20 Aligned_cols=218 Identities=28% Similarity=0.435 Sum_probs=192.1
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
+++++++++.|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 4678899998863 469999999999999999999999999999999999999999999999998743 3456789
Q ss_pred EEEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 119 GYVTQRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 119 ~yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
+|++|++ .+++..||+||+.|..... ..+.++..++++++++.+||++.. ++.+..||||||||++||+||+.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~-----~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQDFK-----EREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHhHh-----hCCcccCCHHHHHHHHHHHHHHc
Confidence 9999997 4677789999999875432 234556667899999999998766 44678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|++|+|||||+|||+.++..+++.|++++++.|+|||++||+++ ++ ..+|++++|++|+++..|++++..
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999998756999999999997 45 689999999999999999998765
No 82
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-45 Score=371.04 Aligned_cols=214 Identities=29% Similarity=0.491 Sum_probs=185.9
Q ss_pred hhhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch------hh
Q 006505 45 LSKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA------QF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~------~~ 114 (643)
++++++++++|+. +++|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 5678899988864 5799999999999999999999999999999999999999999999999887431 12
Q ss_pred -cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 115 -RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 115 -~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+|+++..+ +.+.+||||||||++||+
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgG~~qrl~la~ 158 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIG-KKKPAEINSRALEMLAAVGLEHRAN-----HRPSELSGGERQRVAIAR 158 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHH
Confidence 257999999999999999999999875432 2234455677899999999987663 466899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++. +.. +|++++|++|+++..|+.
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 159 ALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999976558999999999973 554 689999999999988864
No 83
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.8e-45 Score=365.93 Aligned_cols=202 Identities=32% Similarity=0.503 Sum_probs=177.5
Q ss_pred cccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCC
Q 006505 48 LEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDT 126 (643)
Q Consensus 48 ~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~ 126 (643)
++|++++|++ +++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.....++.++|++|++.
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 5678888887 789999999999999999999999999999999999999999999999998754455678999999974
Q ss_pred -CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 127 -LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 127 -l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+..+|++||+.+..... . . ..+++.++++.+|+.+.. ++.+.+||||||||++||+||+.+|++++||
T Consensus 82 ~~~~~~tv~e~l~~~~~~~-~--~--~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~llllD 151 (205)
T cd03226 82 YQLFTDSVREELLLGLKEL-D--A--GNEQAETVLKDLDLYALK-----ERHPLSLSGGQKQRLAIAAALLSGKDLLIFD 151 (205)
T ss_pred hhhhhccHHHHHhhhhhhc-C--c--cHHHHHHHHHHcCCchhc-----CCCchhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 344579999998765322 1 1 135688999999998766 4467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL 261 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 261 (643)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|+++
T Consensus 152 EPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 152 EPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 999999999999999999999864 999999999997 578899999999999874
No 84
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=5.7e-45 Score=373.81 Aligned_cols=218 Identities=28% Similarity=0.450 Sum_probs=191.7
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---------------
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--------------- 111 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--------------- 111 (643)
+++++++.|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~ 81 (252)
T TIGR03005 2 RFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKH 81 (252)
T ss_pred EEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhH
Confidence 46788899988899999999999999999999999999999999999999999999999987632
Q ss_pred -hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 112 -AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 112 -~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
..+++.++|++|++.+++..|+.||+.++.........++.++++.++++.+|+.+.. ++.+.+||||||||++
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 82 LRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-----DHMPAQLSGGQQQRVA 156 (252)
T ss_pred HHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----hcChhhcCHHHHHHHH
Confidence 1346789999999999999999999987543211223445566789999999998766 3467899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998756899999999997 578899999999999999999987663
No 85
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=5.2e-45 Score=373.02 Aligned_cols=216 Identities=24% Similarity=0.418 Sum_probs=190.4
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCCcCCc-----hhhc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-----SGSTFVNGSPIDK-----AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-----~G~I~~~g~~~~~-----~~~~ 115 (643)
+++++++++|+++.+++|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|+++.. ...+
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 81 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELR 81 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHH
Confidence 45788999998888999999999999999999999999999999999999988 9999999998742 2356
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh----hhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE----HVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~----~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
+.++|++|++.+++ +|++||+.+....+...+.++.+++++++++.+|+. +.. ++.+++||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 82 RRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRL-----HDSALGLSGGQQQRLCI 155 (247)
T ss_pred hheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHh-----hCCcccCCHHHHHHHHH
Confidence 78999999998888 899999998765432123455567789999999997 444 44678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999976 489999999997 588999999999999999999988763
No 86
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6e-45 Score=374.74 Aligned_cols=220 Identities=29% Similarity=0.443 Sum_probs=192.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------------
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------------- 111 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------------- 111 (643)
.+++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADK 84 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccc
Confidence 3678999999988899999999999999999999999999999999999999999999999987631
Q ss_pred ---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHH
Q 006505 112 ---AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 112 ---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqR 188 (643)
..+++.++|++|++.+++.+||+||+.++.........++.++++.++++.+|+.+... ++.+.+||||||||
T Consensus 85 ~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----~~~~~~LS~G~~qr 160 (257)
T PRK10619 85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----GKYPVHLSGGQQQR 160 (257)
T ss_pred hHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----hCCcccCCHHHHHH
Confidence 23467899999999999999999999875421112234555678899999999976431 34678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 189 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQ 238 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999874 999999999997 5788999999999999999999877
Q ss_pred HH
Q 006505 269 LS 270 (643)
Q Consensus 269 ~~ 270 (643)
..
T Consensus 239 ~~ 240 (257)
T PRK10619 239 LF 240 (257)
T ss_pred hh
Confidence 53
No 87
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.7e-45 Score=368.39 Aligned_cols=213 Identities=33% Similarity=0.477 Sum_probs=181.2
Q ss_pred hhccccccccccc----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhc
Q 006505 46 SKLEEAADSDGVR----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~~----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~ 115 (643)
+++++++++|+++ ++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ..++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 4578888888765 79999999999999999999999999999999999999999999999988743 2356
Q ss_pred ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 116 KVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRAR-VKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 116 ~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~-v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
+.++|++|++ .+++.+||+||+.+..........++..+. ++++++.+++. +.. +..+..||||||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrv~l 156 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVL-----NRYPHELSGGQRQRVAI 156 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHh-----hCCchhcCHHHHHHHHH
Confidence 7899999998 467789999999886544322122222223 36889999995 444 44678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|
T Consensus 157 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 157 ARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998755899999999997 577899999999999998754
No 88
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-45 Score=394.22 Aligned_cols=218 Identities=27% Similarity=0.426 Sum_probs=193.6
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh----hcccE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ----FRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~----~~~~i 118 (643)
+..+++.+.|+...+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. .. .++.+
T Consensus 29 ~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~i 108 (400)
T PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108 (400)
T ss_pred ccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCE
Confidence 455667778888889999999999999999999999999999999999999999999999998743 11 23579
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+||+|++.+++.+||+||+.+....+ ..+.++.++++.++++.+||++.. ++++++|||||||||+|||||+.+
T Consensus 109 gyv~Q~~~l~~~~Tv~enl~~~~~~~-~~~~~~~~~~~~e~L~~~gL~~~~-----~~~~~~LSgGq~QRv~LArAL~~~ 182 (400)
T PRK10070 109 AMVFQSFALMPHMTVLDNTAFGMELA-GINAEERREKALDALRQVGLENYA-----HSYPDELSGGMRQRVGLARALAIN 182 (400)
T ss_pred EEEECCCcCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCChhh-----hcCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986543 234455567889999999998766 447789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 183 P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 183 PDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999999999998766899999999997 588999999999999999999988764
No 89
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-45 Score=385.89 Aligned_cols=222 Identities=25% Similarity=0.379 Sum_probs=195.5
Q ss_pred hhhhccccccccc----------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--
Q 006505 44 ELSKLEEAADSDG----------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-- 111 (643)
Q Consensus 44 ~~~~~~~~~~~~~----------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-- 111 (643)
++++++|+++.|+ .+.+|+|||++|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 4577889988885 2579999999999999999999999999999999999999999999999998743
Q ss_pred ----hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHH
Q 006505 112 ----AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGG 184 (643)
Q Consensus 112 ----~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGG 184 (643)
..+++.++||+|++ .+.|.+|+.+++...........+++.++++.++++.+||.+ .. +.++++||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~p~~LSgG 158 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHY-----DRYPHMFSGG 158 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHh-----cCCCccCCHH
Confidence 23567899999997 589999999999876654322345566778999999999963 33 5578999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 185 ERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 185 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||||+||+||+.+|++|++||||+|||..++.+++++|++++++.|.|+|++|||++ .+.+++|+|++|++|++++.|
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999998867999999999997 477899999999999999999
Q ss_pred ChhHHHH
Q 006505 265 TVDLLSV 271 (643)
Q Consensus 265 ~~~~~~~ 271 (643)
+++++.+
T Consensus 238 ~~~~~~~ 244 (327)
T PRK11308 238 TKEQIFN 244 (327)
T ss_pred CHHHHhc
Confidence 9988753
No 90
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=9.9e-43 Score=428.73 Aligned_cols=222 Identities=30% Similarity=0.467 Sum_probs=200.2
Q ss_pred hhhhccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEE
Q 006505 44 ELSKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~ 119 (643)
..+++++++++|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...|+.+|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 4678999999995 5789999999999999999999999999999999999999999999999998753 34677899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|++|++.+++.+||+||+.|.++++. .+.++.+++++++++.+||++.. ++.+++|||||||||+||+||+.+|
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg-~~~~~~~~~v~~lL~~vgL~~~~-----~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKG-RSWEEAQLEMEAMLEDTGLHHKR-----NEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999877652 34455567899999999998776 4467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 274 (643)
++++|||||+|||+.++..+.++|++++ + |+|||++||+++ ++..++|||++|++|+++..|+++++.+.+.
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHHHhcC
Confidence 9999999999999999999999999994 3 899999999997 5888999999999999999999999876653
No 91
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-45 Score=373.83 Aligned_cols=213 Identities=27% Similarity=0.467 Sum_probs=188.1
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+++++++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. .++.++|++|++
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~ 79 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG--PGAERGVVFQNE 79 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC--CCCcEEEEeCCC
Confidence 467899999988889999999999999999999999999999999999999999999999998743 234689999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+||+||+.+....+ ....++.++++.++++.+|+.+..+ +.+.+||||||||++||++|+.+|++||||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrl~laral~~~p~lllLD 153 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEGAEK-----RYIWQLSGGQRQRVGIARALAANPQLLLLD 153 (255)
T ss_pred ccCCCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999998865433 2234445667899999999987663 467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe--CCeEEEecChh
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA--NGSVLHHGTVD 267 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 267 (643)
|||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|+ +|+++..++.+
T Consensus 154 EPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999986655899999999997 5889999999998 59999887654
No 92
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-45 Score=378.53 Aligned_cols=221 Identities=32% Similarity=0.504 Sum_probs=193.5
Q ss_pred hhhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC-----chhhccc
Q 006505 44 ELSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID-----KAQFRKV 117 (643)
Q Consensus 44 ~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~-----~~~~~~~ 117 (643)
++++++|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ...+++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 3577899999996 578999999999999999999999999999999999999999999999998873 1346678
Q ss_pred EEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 118 SGYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 118 i~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
++|++|++. .+...||+||+.+..... ..+.++.+++++++++.+||.+.. ++.++.||||||||++||+||+
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~-----~~~~~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEHLK-----DKPTHCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhhh-----hCCcccCCHHHHHHHHHHHHHH
Confidence 999999973 234479999998865432 234555567889999999998766 4577899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++++..
T Consensus 158 ~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 158 MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999998766899999999997 4778999999999999999999988753
No 93
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.4e-45 Score=365.31 Aligned_cols=206 Identities=32% Similarity=0.529 Sum_probs=181.6
Q ss_pred hhcccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcccE
Q 006505 46 SKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~i 118 (643)
+++++++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 4578888888 46789999999999999999999999999999999999999999999999988743 1356789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+|++|++.+++.+|++||+.+....+ ....+..+++++++++.+|+.+..+ +.+..||||||||++||++|+.+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~ 155 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEHKAD-----AFPEQLSGGEQQRVAIARAIVNS 155 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999875533 1233445567899999999987653 46679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|+
T Consensus 156 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 156 PPLLLADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999764 899999999997 5888999999999985
No 94
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.4e-45 Score=364.94 Aligned_cols=207 Identities=31% Similarity=0.514 Sum_probs=182.6
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhcccEEEE
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~yv 121 (643)
++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..+++.++|+
T Consensus 2 ~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (213)
T cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMV 81 (213)
T ss_pred EEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEE
Confidence 46788899988899999999999999999999999999999999999999999999999988732 2456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+|++.+++.+|++||+.+..........++.+++++++++.+|+.+..++ .+.+||||||||++||++|+.+|++
T Consensus 82 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 82 FQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----CccccCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998864321122344456678999999999876644 6789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999987 4899999999997 58889999999999974
No 95
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-45 Score=382.33 Aligned_cols=227 Identities=24% Similarity=0.417 Sum_probs=193.2
Q ss_pred hhccccccccccc-----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC----------
Q 006505 46 SKLEEAADSDGVR-----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---------- 110 (643)
Q Consensus 46 ~~~~~~~~~~~~~-----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---------- 110 (643)
++++|+++.|+.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|+++|++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 4678888888643 5999999999999999999999999999999999999999999999987541
Q ss_pred -----------------chhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhh
Q 006505 111 -----------------KAQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAM 170 (643)
Q Consensus 111 -----------------~~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~ 170 (643)
...+++.+|||+|++ .++ ..||+||+.|+.... ..++++.++++.++++.+||. +..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~- 159 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELVGLDESYL- 159 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChhhh-
Confidence 124567899999985 344 469999999876432 345666677899999999996 555
Q ss_pred hhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 006505 171 ARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFN 250 (643)
Q Consensus 171 ~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D 250 (643)
++++..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||++ .+.+++|
T Consensus 160 ----~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~-~~~~~ad 233 (305)
T PRK13651 160 ----QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLD-NVLEWTK 233 (305)
T ss_pred ----hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHH-HHHHhCC
Confidence 457789999999999999999999999999999999999999999999999986 4999999999997 4889999
Q ss_pred EEEEEeCCeEEEecChhHHHH---HHHHcCCCCC
Q 006505 251 SILMLANGSVLHHGTVDLLSV---SLRMMGLQLP 281 (643)
Q Consensus 251 ~v~~L~~G~iv~~G~~~~~~~---~f~~~g~~~p 281 (643)
+|++|++|++++.|+++++.. .+...|...|
T Consensus 234 rv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 267 (305)
T PRK13651 234 RTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP 267 (305)
T ss_pred EEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 999999999999999988753 2334455433
No 96
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-45 Score=379.61 Aligned_cols=218 Identities=26% Similarity=0.443 Sum_probs=190.4
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hh
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQ 113 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~ 113 (643)
++++++++.|+. +.+|+|||++|++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 457888888863 469999999999999999999999999999999999999999999999988742 24
Q ss_pred hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 114 FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 114 ~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
+++.+|||+|++ .+++ .||.||+.|..... ..+.++..++++++++.+||. +.. ++.++.||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF-KMNLDEVKNYAHRLLMDLGFSRDVM-----SQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccch-hhHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChhhh-----hCCcccCCHHHHHHHH
Confidence 677899999986 4666 49999999875432 234556667899999999996 455 3467899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999998756999999999997 478899999999999999999998864
Q ss_pred H
Q 006505 271 V 271 (643)
Q Consensus 271 ~ 271 (643)
+
T Consensus 235 ~ 235 (286)
T PRK13646 235 K 235 (286)
T ss_pred h
Confidence 3
No 97
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-45 Score=370.85 Aligned_cols=216 Identities=29% Similarity=0.465 Sum_probs=189.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h-hhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A-QFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~-~~~~~i~y 120 (643)
++++++++++|+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. . ..++.++|
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEE
Confidence 5678999999988899999999999999999999999999999999999999999999999988743 1 24667999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL-GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++|++.+++.+||.||+.++.... ..++..++++++++.+ ++.+..+ .++..||||||||++||++|+.+|
T Consensus 85 ~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFA---ERDQFQERIKWVYELFPRLHERRI-----QRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred eccCcccCCCCcHHHHHHHhhhcc---ChhHHHHHHHHHHHHHHHHHHHHh-----CchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999998864321 2233345677788887 4765543 367899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999999999999874 999999999997 588999999999999999999988774
No 98
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-45 Score=370.98 Aligned_cols=216 Identities=31% Similarity=0.475 Sum_probs=189.3
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---------chhhcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---------KAQFRK 116 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---------~~~~~~ 116 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++. ....++
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRR 82 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHh
Confidence 45788999998889999999999999999999999999999999999999999999999998762 123467
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFS-AKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~-~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
.++|++|++.+++.+||.||+.+. .... +...++..+++.++++.+|+++..+ +.++.||||||||++||++|
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~i~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~laral 156 (242)
T PRK11124 83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVL-GLSKDQALARAEKLLERLRLKPYAD-----RFPLHLSGGQQQRVAIARAL 156 (242)
T ss_pred heEEEecCccccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHHH
Confidence 899999999999999999999753 2222 2234445567899999999987664 46789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|++||+++ ++.+++|++++|++|++++.|++++.
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999999999976 4999999999997 57789999999999999999987754
No 99
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=383.31 Aligned_cols=231 Identities=23% Similarity=0.395 Sum_probs=196.7
Q ss_pred hhhhhhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----
Q 006505 42 QEELSKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----- 111 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----- 111 (643)
..++++++++++.|+. +++|+|||+++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 3356889999999864 369999999999999999999999999999999999999999999999977532
Q ss_pred --------------hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcC
Q 006505 112 --------------AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVG 174 (643)
Q Consensus 112 --------------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg 174 (643)
..+++.++||+|++ .+++. ||+||+.|+.... ..+.++..+++.++++.+||. +..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~----- 170 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLDDSYL----- 170 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCChhHh-----
Confidence 24577899999986 56764 9999998875422 234555667889999999996 444
Q ss_pred CCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 175 ~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
++.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~-~~~~~adri~v 248 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTME-HVLEVADEVIV 248 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEE
Confidence 4567899999999999999999999999999999999999999999999999864 999999999997 47889999999
Q ss_pred EeCCeEEEecChhHHHH---HHHHcCCCCC
Q 006505 255 LANGSVLHHGTVDLLSV---SLRMMGLQLP 281 (643)
Q Consensus 255 L~~G~iv~~G~~~~~~~---~f~~~g~~~p 281 (643)
|++|+++..|+++++.+ .+...|+..|
T Consensus 249 l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 99999999999988742 2344555544
No 100
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-45 Score=373.67 Aligned_cols=220 Identities=24% Similarity=0.412 Sum_probs=191.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh-hcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ-FRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~-~~~~i~y 120 (643)
+++++|++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .. .+..++|
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence 5778999999988899999999999999999999999999999999999999999999999998743 12 2446899
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRL--------------RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGER 186 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~--------------~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGer 186 (643)
++|++.+++.+||+||+.++..... ....++..+++.++++.+|+.+.. ++++++||||||
T Consensus 85 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LS~G~~ 159 (255)
T PRK11300 85 TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHA-----NRQAGNLAYGQQ 159 (255)
T ss_pred eccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhh-----hCChhhCCHHHH
Confidence 9999999999999999998643110 001123345688899999998766 446789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 187 RRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 187 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~ 238 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTP 238 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCH
Confidence 99999999999999999999999999999999999999998755899999999997 58899999999999999999998
Q ss_pred hHHH
Q 006505 267 DLLS 270 (643)
Q Consensus 267 ~~~~ 270 (643)
+++.
T Consensus 239 ~~~~ 242 (255)
T PRK11300 239 EEIR 242 (255)
T ss_pred HHHh
Confidence 7753
No 101
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-45 Score=363.23 Aligned_cols=208 Identities=35% Similarity=0.616 Sum_probs=184.3
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEccC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQR 124 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~ 124 (643)
++++++++|+++++++|+|+++++| +++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++.++|++|+
T Consensus 2 ~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 80 (211)
T cd03264 2 QLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQE 80 (211)
T ss_pred EEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCC
Confidence 4678888998888999999999999 999999999999999999999999999999999988743 3456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.+++.+||+||+.+....+ ..+.++.+++++++++.+|+.+..+ ..+..||||||||++||+||+.+|++++|
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llll 154 (211)
T cd03264 81 FGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELVNLGDRAK-----KKIGSLSGGMRRRVGIAQALVGDPSILIV 154 (211)
T ss_pred CcccccCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCHHHHh-----CchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999876543 2233444667899999999987664 46689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+++|++++|++|++++.|
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 155 DEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999975 589999999997 477899999999999998765
No 102
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=7.1e-45 Score=363.72 Aligned_cols=206 Identities=30% Similarity=0.502 Sum_probs=181.7
Q ss_pred hcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhcccEE
Q 006505 47 KLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKVSG 119 (643)
Q Consensus 47 ~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~~~i~ 119 (643)
++++++++|++ +++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++
T Consensus 2 ~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 81 (214)
T cd03292 2 EFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG 81 (214)
T ss_pred EEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheE
Confidence 46788888864 689999999999999999999999999999999999999999999999987742 13567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|++|++.+++.+|++||+.+....+. ...++.+++++++++.+|+++..+ +.+.+||||||||++||++|+.+|
T Consensus 82 ~v~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p 155 (214)
T cd03292 82 VVFQDFRLLPDRNVYENVAFALEVTG-VPPREIRKRVPAALELVGLSHKHR-----ALPAELSGGEQQRVAIARAIVNSP 155 (214)
T ss_pred EEecCchhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHhh-----CChhhcCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998765432 234455667899999999987664 466799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|++
T Consensus 156 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 156 TILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999764 899999999997 47789999999999974
No 103
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-45 Score=373.97 Aligned_cols=210 Identities=29% Similarity=0.471 Sum_probs=187.8
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
++.++++|++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++. .+++.++|++
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~--~~~~~i~~v~ 87 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA--EAREDTRLMF 87 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH--HhhCceEEEe
Confidence 35678999999999889999999999999999999999999999999999999999999999998753 4567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+||+||+.+... . ..++++.++++.+|+.+.. ++.+..||||||||++||++|+.+|+++
T Consensus 88 q~~~l~~~~tv~enl~~~~~-----~--~~~~~~~~~l~~~gl~~~~-----~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLK-----G--QWRDAALQALAAVGLADRA-----NEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred cCccCCCCCcHHHHHHhccc-----c--hHHHHHHHHHHHcCChhHh-----cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998999999987531 1 1245688999999998766 4467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||||||+|||+.++..+.+.|++++++.|+|||++|||++ .+.+++|++++|++|++++.|+.+
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999997656899999999997 478899999999999999988754
No 104
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-44 Score=368.87 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=190.3
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h-hhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A-QFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~-~~~~~i~y 120 (643)
++++++++++|+++++|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++.. . ..++.++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 4568899999988889999999999999999999999999999999999999999999999987643 1 23456999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRL-------RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~-------~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
++|++.+++.+||+||+.+...... ....++.+++++++++.+|+++.. ++.++.|||||||||+||+
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-----DRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHH
Confidence 9999999999999999988643211 012234456789999999998766 4467899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+++..|+++++.
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999999999999974 689999999997 588899999999999999999887753
No 105
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=372.93 Aligned_cols=218 Identities=32% Similarity=0.495 Sum_probs=190.4
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~ 122 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...++.++|++
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLP 82 (258)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEc
Confidence 567899999988899999999999999999999999999999999999999999999999987643 33456799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh------
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI------ 196 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~------ 196 (643)
|++.+++.+||+||+.+..... ....++.+++++++++.+|+.+.. +..+.+||||||||++||++|+
T Consensus 83 q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGe~qrv~la~al~~~~~~~ 156 (258)
T PRK13548 83 QHSSLSFPFTVEEVVAMGRAPH-GLSRAEDDALVAAALAQVDLAHLA-----GRDYPQLSGGEQQRVQLARVLAQLWEPD 156 (258)
T ss_pred cCCcCCCCCCHHHHHHhhhccc-CCCcHHHHHHHHHHHHHcCCHhHh-----cCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 9998888899999998864322 112233456788999999998766 4467899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 5999999999999999999999999999998445899999999997 578899999999999999999987654
No 106
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-44 Score=375.71 Aligned_cols=218 Identities=27% Similarity=0.421 Sum_probs=192.0
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
++++++++++|+. +++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 5678999999964 579999999999999999999999999999999999999999999999998753 34567899
Q ss_pred EEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 120 YVTQRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 120 yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|++|++ .+++..||.||+.+..... ..+.++.+++++++++.+||++..+ +.+..||||||||++||++|+.+
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMEDFLN-----REPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChhhhh-----CCcccCCHHHHHHHHHHHHHHcC
Confidence 999997 3666789999999875543 2344555678999999999987764 46789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|++++.|+++++.
T Consensus 159 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 159 PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999987668999999999974 54 59999999999999999988765
No 107
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=383.43 Aligned_cols=223 Identities=26% Similarity=0.339 Sum_probs=192.4
Q ss_pred hhhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC----CccEEEECCCcCCc---hh
Q 006505 45 LSKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP----QSGSTFVNGSPIDK---AQ 113 (643)
Q Consensus 45 ~~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~----~~G~I~~~g~~~~~---~~ 113 (643)
+++++++++.|+. ..+|+||||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. ..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3578899988876 4699999999999999999999999999999999999874 79999999998743 22
Q ss_pred h----cccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 114 F----RKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 114 ~----~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
. ++.++||+|++ .+.|.+|+.+++...........+++.++++.++++.+||.+..+ ..++++++|||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHHH
Confidence 2 24699999997 578999999998776544323345666778999999999974221 125688999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||+||+||+.+|++|++||||+|||+.++.+++++|++++++.|.|+|++|||++ .+.+++|+|++|++|++++.|+++
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~ 239 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAH 239 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999998767999999999997 478899999999999999999998
Q ss_pred HHH
Q 006505 268 LLS 270 (643)
Q Consensus 268 ~~~ 270 (643)
++.
T Consensus 240 ~~~ 242 (326)
T PRK11022 240 DIF 242 (326)
T ss_pred HHh
Confidence 875
No 108
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1e-44 Score=361.83 Aligned_cols=204 Identities=34% Similarity=0.570 Sum_probs=178.4
Q ss_pred cccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEc
Q 006505 48 LEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 48 ~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~ 122 (643)
+++++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..+++.++|++
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVF 81 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEe
Confidence 5678888877 789999999999999999999999999999999999999999999999987642 34567899999
Q ss_pred cCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 123 QRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 123 Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
|++. .++.+|++||+.+..... ....++.+++++++++.+|+.+.. ++++..||||||||++||+||+.+|++
T Consensus 82 q~~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 82 QNPDDQFFGPTVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEGLR-----DRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred cChhhhcCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHhhh-----cCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9974 366789999998865432 223344456788999999998765 446789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999875 999999999997 5888899999999885
No 109
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=8e-45 Score=363.29 Aligned_cols=207 Identities=34% Similarity=0.572 Sum_probs=178.2
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCC
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTL 127 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l 127 (643)
++|++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ..++.++|++|++.+
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~ 79 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE--KERKRIGYVPQRRSI 79 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH--HHHhheEEecccccc
Confidence 578888998888999999999999999999999999999999999999999999999998764 456789999999876
Q ss_pred C--CCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 128 F--PLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 128 ~--~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
. ..+||+||+.+....... ...++.+++++++++.+|+++..+ +++.+||||||||++||+||+.+|++|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~ll 154 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----RQIGELSGGQQQRVLLARALVQDPDLL 154 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 3 337999999876432110 112334567899999999987664 467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++| +++.|
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 155 LLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999987 4999999999997 588899999999876 55554
No 110
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.4e-44 Score=363.59 Aligned_cols=208 Identities=31% Similarity=0.499 Sum_probs=179.7
Q ss_pred hhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h---hhc
Q 006505 46 SKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A---QFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~---~~~ 115 (643)
+++++++++|++ +++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. . .++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 457788888864 579999999999999999999999999999999999999999999999988743 1 123
Q ss_pred -ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 116 -KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 116 -~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+.++|++|++.+++.+|++||+.+....+. ....+..+++.++++.+|+++..+ +.+..||||||||++||++
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGK-KSVKEAKERAYEMLEKVGLEHRIN-----HRPSELSGGERQRVAIARA 155 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHHHHHHH
Confidence 579999999999999999999998654331 233444567889999999987664 4668999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL 261 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 261 (643)
|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+ +.+|++++|++|+++
T Consensus 156 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 156 LVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 999999999999999999999999999999998755899999999997 35 458999999999975
No 111
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.4e-44 Score=363.95 Aligned_cols=208 Identities=29% Similarity=0.481 Sum_probs=183.4
Q ss_pred hhcccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h---hhcccE
Q 006505 46 SKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A---QFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~---~~~~~i 118 (643)
++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. . .+++.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 4578888898 66789999999999999999999999999999999999999999999999987642 1 246789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+|++|++.+++.+|++||+.+....+ ..+.++.+++++++++.+++.+..+ +.+..||||||||++||+||+.+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLDKAK-----NFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCChhhhh-----CCchhCCHHHHHHHHHHHHHHcC
Confidence 99999998888899999999875443 2234445567889999999987663 46789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL 261 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 261 (643)
|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|++|+++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999764 899999999997 588899999999999975
No 112
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-44 Score=373.35 Aligned_cols=217 Identities=26% Similarity=0.425 Sum_probs=189.4
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhcccEEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~y 120 (643)
++++|++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ...++.++|
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 81 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVAT 81 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEE
Confidence 567899999988899999999999999999999999999999999999999999999999998731 235678999
Q ss_pred EccCCCC-CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDTL-FPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~l-~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++|++.+ +...|+.||+.+..... +...++..++++++++.+|+.+..+ +.+..||||||||++||++|+.+|
T Consensus 82 v~q~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrl~laraL~~~p 155 (271)
T PRK13638 82 VFQDPEQQIFYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQHFRH-----QPIQCLSHGQKKRVAIAGALVLQA 155 (271)
T ss_pred EeeChhhccccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHhHhc-----CCchhCCHHHHHHHHHHHHHHcCC
Confidence 9999753 34468999998865432 2234445567889999999987664 467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999864 899999999997 578899999999999999999988764
No 113
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-44 Score=377.25 Aligned_cols=216 Identities=27% Similarity=0.437 Sum_probs=188.6
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hh
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQ 113 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~ 113 (643)
+++++++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 457889999974 569999999999999999999999999999999999999999999999987632 23
Q ss_pred hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 114 FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 114 ~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
.++.++|++|++ .++ .+||.||+.+..... ....++..++++++++.+||+ +.. ++++++||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSEDLI-----SKSPFELSGGQMRRVA 155 (287)
T ss_pred HHhceEEEEeChhhhhc-cchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHh-----hCCcccCCHHHHHHHH
Confidence 466899999996 355 579999998865432 234455667889999999996 455 4467899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999764 999999999997 588999999999999999999988764
No 114
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.1e-44 Score=382.70 Aligned_cols=224 Identities=25% Similarity=0.351 Sum_probs=195.6
Q ss_pred hhhhccccccccc----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCCcCCc---hh
Q 006505 44 ELSKLEEAADSDG----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDK---AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---~G~I~~~g~~~~~---~~ 113 (643)
++++++|+++.|+ ...+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. ..
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 4678999999884 357999999999999999999999999999999999999986 9999999998743 22
Q ss_pred ---hc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 114 ---FR-KVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 114 ---~~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
+| +.++||+|++ .++|.+|+.+++........+.++++..+++.++++.+||.+..+. .+.++++|||||||
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~LSgG~~Q 168 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHH--hcCCcccCCHHHHH
Confidence 23 4799999997 6889999999998766543333556667789999999999753322 25688999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||+||+||+.+|++||+||||+|||+.++.+++++|++++++.|.|+|++|||++ .+.+++|++++|++|++++.|+++
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999998867999999999997 477899999999999999999998
Q ss_pred HHH
Q 006505 268 LLS 270 (643)
Q Consensus 268 ~~~ 270 (643)
++.
T Consensus 248 ~i~ 250 (330)
T PRK09473 248 DVF 250 (330)
T ss_pred HHH
Confidence 875
No 115
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-44 Score=372.80 Aligned_cols=219 Identities=35% Similarity=0.518 Sum_probs=191.4
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++|++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 356889999995 5679999999999999999999999999999999999999999999999988743 345678999
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++|++. .+...||.||+.+..... ....++.+++++++++.+||.+..+ +.++.||||||||++||+||+.+|
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Gq~qrl~laraL~~~p 156 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEELRD-----RVPHHLSGGEKKRVAIAGVIAMEP 156 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCC
Confidence 999963 333579999998765432 2344555667899999999987664 467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 157 ~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 157 QVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 9999999999999999999999999998755899999999997 588999999999999999999998875
No 116
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=369.58 Aligned_cols=221 Identities=23% Similarity=0.384 Sum_probs=189.3
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ..
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 45778999999988889999999999999999999999999999999999864 579999999988742 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++. ||+||+.+....+.....+..+++++++++.+|+.+...+.. ++.++.|||||||||+||+
T Consensus 85 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HhhcEEEEecCCCCCcC-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHH
Confidence 56789999999988884 999999987544321133444567889999999854222211 4577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+|+.+|++|+|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++.+++|++++|++|+++..|+++++
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 163 ALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999995 3 799999999997 58899999999999999999998775
No 117
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.8e-44 Score=372.92 Aligned_cols=219 Identities=24% Similarity=0.388 Sum_probs=188.7
Q ss_pred hhccccccccc---------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h-
Q 006505 46 SKLEEAADSDG---------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A- 112 (643)
Q Consensus 46 ~~~~~~~~~~~---------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~- 112 (643)
+++++++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 56778888885 4679999999999999999999999999999999999999999999999988743 1
Q ss_pred --hhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHH
Q 006505 113 --QFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 113 --~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerq 187 (643)
.+++.++|++|++ .+++.+||+||+.+..........++.++++.++++.+|+. +.. +..+.+|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~~LSgGe~q 157 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDA-----DKLPRQLSGGQLQ 157 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-----hCChhhCCHHHHH
Confidence 2466799999996 46778999999987653221223344556789999999995 455 4467899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
|++||+||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ .+.+++|++++|++|++++.|+++
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHH
Confidence 9999999999999999999999999999999999999998755899999999997 477899999999999999999988
Q ss_pred HHH
Q 006505 268 LLS 270 (643)
Q Consensus 268 ~~~ 270 (643)
++.
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 764
No 118
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-44 Score=360.96 Aligned_cols=209 Identities=31% Similarity=0.467 Sum_probs=181.2
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
.+++++++|+++. .|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 79 (211)
T cd03298 2 RLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQEN 79 (211)
T ss_pred EEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEeccc
Confidence 4678888887654 39999999999999999999999999999999999999999999988743 22356799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|++||+.+....+.. ..++.++++.++++.+|+++..++ .+.+||||||||++||++|+.+|++++||
T Consensus 80 ~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ia~al~~~p~llllD 153 (211)
T cd03298 80 NLFAHLTVEQNVGLGLSPGLK-LTAEDRQAIEVALARVGLAGLEKR-----LPGELSGGERQRVALARVLVRDKPVLLLD 153 (211)
T ss_pred ccCCCCcHHHHHhcccccccC-ccHHHHHHHHHHHHHcCCHHHHhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999999876432211 123345678999999999876644 67899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|
T Consensus 154 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 154 EPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999998756899999999997 588899999999999998654
No 119
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=373.60 Aligned_cols=221 Identities=26% Similarity=0.397 Sum_probs=192.4
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++++++++|+++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ..+++.++|
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 45789999999988899999999999999999999999999999999999999999999999987632 345678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
++|+..+++.+|+.||+.+....... ..++..+++++++++.+++++.. +..+++||||||||++||++|+.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA-----HRLVDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----cCCcccCCHHHHHHHHHHHHHhc
Confidence 99998888899999999875321111 11223456788999999998765 44677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|++|||||||+|||+.++..+.+.|++++++.|.|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999998755899999999997 588999999999999999999887653
No 120
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=371.63 Aligned_cols=230 Identities=25% Similarity=0.377 Sum_probs=195.9
Q ss_pred hhhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 44 ELSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 44 ~~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
+++++++++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.+
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 45788999999975 459999999999999999999999999999999999999999999999988743 3467789
Q ss_pred EEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 119 GYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 119 ~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
+|++|++. +++..|+.+|+.+..... ....++..++++++++.+|+.+..+ ..++.||||||||++||+||+.
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHHHHHHHHHc
Confidence 99999974 677789999998875432 2234455667889999999987664 4678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH---HHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV---SLR 274 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~---~f~ 274 (643)
+|+++||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.. +|++++|++|++++.|+++++.+ .+.
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 237 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIFDHAEELT 237 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHhcCHHHHH
Confidence 999999999999999999999999999998755899999999997 4654 99999999999999999987643 333
Q ss_pred HcCCCCC
Q 006505 275 MMGLQLP 281 (643)
Q Consensus 275 ~~g~~~p 281 (643)
..|.++|
T Consensus 238 ~~~~~~~ 244 (269)
T PRK13648 238 RIGLDLP 244 (269)
T ss_pred hcCCCCC
Confidence 4454443
No 121
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-44 Score=368.34 Aligned_cols=221 Identities=27% Similarity=0.407 Sum_probs=190.6
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc---hhhccc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK---AQFRKV 117 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~---~~~~~~ 117 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ..+++.
T Consensus 4 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRR 83 (250)
T ss_pred EEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhcc
Confidence 5688999999888999999999999999999999999999999999999874 69999999988743 345678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
++|++|++.+++.+||+||+.+....+.. ...++..+++.++++.+|+.+..... .+..+.+||||||||++||+||+
T Consensus 84 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 84 VQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred EEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999888899999999987543211 13344566789999999986422111 15577899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
.+|++++|||||+|||+.++..+.+.|++++ + |+|+|++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999999999999999999999999999985 3 799999999997 578899999999999999999988764
No 122
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.6e-44 Score=372.01 Aligned_cols=221 Identities=23% Similarity=0.376 Sum_probs=191.1
Q ss_pred hhhhcccccccccc---------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---
Q 006505 44 ELSKLEEAADSDGV---------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--- 111 (643)
Q Consensus 44 ~~~~~~~~~~~~~~---------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--- 111 (643)
++++++|++++|+. +++|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 35778999998862 479999999999999999999999999999999999999999999999988743
Q ss_pred hhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHH
Q 006505 112 AQFRKVSGYVTQRDT--LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqR 188 (643)
...++.++|++|++. +++.+|+.|++.+....+.....++..++++++++.+|+. +.. +..+..||||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qr 157 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-----SYYPHMLAPGQKQR 157 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-----hcCchhcCHHHHHH
Confidence 223467999999974 6788899999988765443233445556789999999994 444 33668999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 189 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|++++
T Consensus 158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999999999999999999999999999999999998756899999999997 5888999999999999999998877
Q ss_pred HH
Q 006505 269 LS 270 (643)
Q Consensus 269 ~~ 270 (643)
+.
T Consensus 237 ~~ 238 (267)
T PRK15112 237 VL 238 (267)
T ss_pred Hh
Confidence 54
No 123
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.6e-44 Score=386.46 Aligned_cols=214 Identities=31% Similarity=0.467 Sum_probs=190.5
Q ss_pred cccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCC----cCCc---h---hhc-ccE
Q 006505 50 EAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGS----PIDK---A---QFR-KVS 118 (643)
Q Consensus 50 ~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~----~~~~---~---~~~-~~i 118 (643)
++.++|+...+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+ ++.. . ..| +.+
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 3457889999999999999999999999999999999999999999999999999996 3321 1 222 579
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+||+|+..++|.+||+||+.++...+ +.++++.+++++++++.+||++.. +.++.+|||||||||+|||||+.+
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~-g~~~~~~~~~a~e~le~vgL~~~~-----~~~~~~LSgGq~QRV~LARALa~~ 182 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQ-GMPEAERRKRVDEQLELVGLAQWA-----DKKPGELSGGMQQRVGLARAFAMD 182 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986543 234556677899999999998776 446789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|||||||+|||+.++.++.+.|++++++.|+|||++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 183 P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 183 ADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999998766999999999997 588999999999999999999998874
No 124
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.6e-44 Score=365.40 Aligned_cols=213 Identities=27% Similarity=0.406 Sum_probs=185.4
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h-hhcccEEEEc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A-QFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~-~~~~~i~yv~ 122 (643)
++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. . ..++.++|++
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (230)
T TIGR03410 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVP 81 (230)
T ss_pred EEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEec
Confidence 46788899988899999999999999999999999999999999999999999999999988643 1 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-ChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELG-LEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-l~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
|++.+++.+|++||+.+....+. .. ..+.++++++.++ +.+.. ++.+++||||||||++||++|+.+|++
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~l~~~~-----~~~~~~LS~G~~qrv~la~al~~~p~i 152 (230)
T TIGR03410 82 QGREIFPRLTVEENLLTGLAALP-RR---SRKIPDEIYELFPVLKEML-----GRRGGDLSGGQQQQLAIARALVTRPKL 152 (230)
T ss_pred cCCcccCCCcHHHHHHHHHHhcC-cc---hHHHHHHHHHHHHhHHHHh-----hCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999988754331 11 2234567777776 45444 456789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 153 LLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999998755899999999997 58889999999999999999998876
No 125
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-44 Score=373.34 Aligned_cols=216 Identities=30% Similarity=0.447 Sum_probs=189.1
Q ss_pred hhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 46 SKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
+.+++++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. ...++.++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 45788999985 5679999999999999999999999999999999999999999999999998742 345678999
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++|++. .+...|+.||+.+..... ..+.++.+++++++++.+|+++..+ ..++.||||||||++||+||+.+|
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~laral~~~p 155 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEKYRH-----RSPKTLSGGQGQCVALAGILTMEP 155 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHHHhc-----CCcccCCHHHHHHHHHHHHHHcCC
Confidence 999975 366689999998875432 2345555677899999999987664 467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ +.+|++++|++|++++.|+++++.
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999986 4999999999997 46 679999999999999999988764
No 126
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=372.63 Aligned_cols=220 Identities=23% Similarity=0.392 Sum_probs=192.3
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
.+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|+
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 86 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLL 86 (265)
T ss_pred EEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEe
Confidence 4678999999998899999999999999999999999999999999999999999999999987643 3445679999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+|++.+++.+|++||+.+......+ ...+..+++++++++.+|+++.. ++.++.||||||||++||+||+.+
T Consensus 87 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----DQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred eccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----cCCcccCChHHHHHHHHHHHHhcC
Confidence 9999999889999999875211100 11233455788999999998765 446789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++++|||||+|||+.++..+.+.|++++++.|.|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999998755899999999997 588999999999999999999988764
No 127
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-44 Score=368.08 Aligned_cols=222 Identities=23% Similarity=0.327 Sum_probs=189.2
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++.. ..
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 357889999999888899999999999999999999999999999999999987 48999999987632 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
.++.++|++|++.+++ +||+||+.+..........++.+++++++++.+++.+.... .-+..+++||||||||++|||
T Consensus 86 ~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 86 LRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD-KLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHH-HHhCCcccCCHHHHHHHHHHH
Confidence 5678999999988885 89999999875433112334455678899999987421111 114577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++|+|||||+|||+.++..+++.|++++ + +.|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 164 TLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999995 3 799999999997 578899999999999999999988764
No 128
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-44 Score=370.05 Aligned_cols=218 Identities=28% Similarity=0.475 Sum_probs=190.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~ 122 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLP 82 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEec
Confidence 467899999998899999999999999999999999999999999999999999999999987632 34566799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 123 QRDTLFPLLTVEETLMFSAKLR---LRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|+..+++.+|+.||+.++.... .....+...++++++++.+|+.+..+ ..+..||||||||++||+||+.+|
T Consensus 83 q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 83 QHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----RRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred ccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----CCcccCCHHHHHHHHHHHHHhcCC
Confidence 9998888899999998753110 11112334567889999999987664 467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999999999999764 899999999997 588999999999999999999887653
No 129
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-44 Score=367.56 Aligned_cols=222 Identities=27% Similarity=0.389 Sum_probs=190.7
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCC-----chhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPID-----KAQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~-----~~~~ 114 (643)
++++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence 46788999999888999999999999999999999999999999999999987 4999999999874 1245
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
++.++|++|++.+++.+||.||+.+....+.. .+.++..++++++++.+|+.+..... -+..+..||||||||++||+
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred hhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHHHHHHHHHHH
Confidence 67899999999999999999999987543311 13444556788999999985321111 14577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 163 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 163 ALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999964 689999999997 588899999999999999999988764
No 130
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-44 Score=371.94 Aligned_cols=216 Identities=26% Similarity=0.409 Sum_probs=186.8
Q ss_pred hhcccccccccc-----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hh
Q 006505 46 SKLEEAADSDGV-----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQ 113 (643)
Q Consensus 46 ~~~~~~~~~~~~-----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~ 113 (643)
+++++++++|++ +++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 457888888864 469999999999999999999999999999999999999999999999987642 23
Q ss_pred hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHH
Q 006505 114 FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 114 ~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
+++.++|++|++ .+++ .||+||+.+..... ..+.++.+++++++++.+||.+ .. ++.+++||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISESLF-----EKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhhh-----hCCcccCCHHHHHHHH
Confidence 567899999996 4555 69999998865432 2234455667889999999963 44 4467899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999864 899999999997 578899999999999999999988764
No 131
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-44 Score=363.35 Aligned_cols=216 Identities=28% Similarity=0.425 Sum_probs=187.4
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~ 124 (643)
+++++++++|+.+. .|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++|+
T Consensus 2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 45788999997654 49999999999999999999999999999999999999999999998743 2234679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.+++.+|+.||+.+....... ..+..+++++++++.+|+++..+ +.+..||||||||++||++++.+|++++|
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~lllL 153 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLK-LNAAQREKLHAIARQMGIEDLLA-----RLPGQLSGGQRQRVALARCLVREQPILLL 153 (232)
T ss_pred cccccCCcHHHHHhcccccccC-CCHHHHHHHHHHHHHcCcHHHHh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999875321111 12334567899999999987664 46789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|++++..
T Consensus 154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999998756899999999997 578899999999999999999987764
No 132
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.1e-44 Score=370.52 Aligned_cols=220 Identities=28% Similarity=0.451 Sum_probs=190.9
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCCcCCc--------h
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDK--------A 112 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---~G~I~~~g~~~~~--------~ 112 (643)
++++++|++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. .
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 3577899999999899999999999999999999999999999999999999886 5999999987632 2
Q ss_pred hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHH
Q 006505 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRL-------RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGE 185 (643)
Q Consensus 113 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~-------~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGe 185 (643)
..++.++|++|++.+++.+||+||+.+...... +...++.+++++++++.+|+.+..++ .+..|||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~ 157 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----RVSTLSGGQ 157 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----CccccCHHH
Confidence 345679999999999999999999987542100 11123345678999999999876644 667999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 186 RRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 186 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+.+++|++++|++|++++.|+
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~ 236 (262)
T PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGHVFYDGS 236 (262)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999998756899999999997 4789999999999999999999
Q ss_pred hhHH
Q 006505 266 VDLL 269 (643)
Q Consensus 266 ~~~~ 269 (643)
+++.
T Consensus 237 ~~~~ 240 (262)
T PRK09984 237 SQQF 240 (262)
T ss_pred HHHh
Confidence 8763
No 133
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-44 Score=368.59 Aligned_cols=221 Identities=23% Similarity=0.383 Sum_probs=189.8
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ..
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 457789999999888999999999999999999999999999999999999875 79999999988632 23
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++ +|++||+.+..... +.+.++.+++++++++.+|+.+..... -+..+..|||||||||+||+
T Consensus 91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~lar 167 (258)
T PRK14268 91 LRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDETSDR-LKSPALSLSGGQQQRLCIAR 167 (258)
T ss_pred HhhhEEEEecCCccCc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcchhhh-hcCChhhCCHHHHHHHHHHH
Confidence 5677999999998888 89999999875433 223444556788999999984221111 14567899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||+.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 168 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 168 TLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999963 799999999997 478899999999999999999988763
No 134
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-44 Score=372.08 Aligned_cols=219 Identities=26% Similarity=0.409 Sum_probs=190.4
Q ss_pred hhhcccccccccc------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhh
Q 006505 45 LSKLEEAADSDGV------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~ 114 (643)
++++++++++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 5678899999863 579999999999999999999999999999999999999999999999988743 345
Q ss_pred cccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 115 ~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
++.++|++|++. .+...||.||+.|..... ..++++.+++++++++.+||++..++ .+.+||||||||++||+
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LS~G~~qrv~lar 157 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENL-GIPPEEIRERVDESLKKVGMYEYRRH-----APHLLSGGQKQRVAIAG 157 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhc-CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHHH
Confidence 778999999974 233469999999875432 23455566789999999999877644 67899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++. +.. +|++++|++|+++..|+++++..
T Consensus 158 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 158 ILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999987569999999999974 554 99999999999999999988753
No 135
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-44 Score=371.10 Aligned_cols=219 Identities=28% Similarity=0.447 Sum_probs=191.1
Q ss_pred hhhhccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 44 ELSKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 44 ~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
++++++|++++|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 3577899999994 5689999999999999999999999999999999999999999999999998743 3467789
Q ss_pred EEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 119 GYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 119 ~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
+|++|++. .++.+||+||+.+..... ....++.+++++++++.+|+.+..++ .++.||||||||++||+||+.
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENK-KVPPKKMKDIIDDLAKKVGMEDYLDK-----EPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhhC-----CcccCCHHHHHHHHHHHHHHc
Confidence 99999974 677789999998865432 22344456678999999999877644 678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|++|+|||||+|||+.++..+.+.|++++++.++|||++||+++. + ..+|++++|++|+++..|+++++.
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999987545999999999974 5 579999999999999999987764
No 136
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=5.1e-44 Score=364.44 Aligned_cols=217 Identities=27% Similarity=0.354 Sum_probs=185.2
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEECCCcCCc---hh-hcccEEE
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TPQSGSTFVNGSPIDK---AQ-FRKVSGY 120 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~~~G~I~~~g~~~~~---~~-~~~~i~y 120 (643)
++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.. .. .+..++|
T Consensus 2 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (243)
T TIGR01978 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFL 81 (243)
T ss_pred eEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEe
Confidence 4688899998889999999999999999999999999999999999995 7899999999988643 12 2345899
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCC-CCCHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLR------LPQAQLRARVKSLVKELGLEH-VAMARVGDDRVR-GISGGERRRVSIG 192 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~------~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~-~LSGGerqRv~ia 192 (643)
++|++.+++.+|++|++.+....... ...++..+++.++++.+|+.+ ..+ +.+. +||||||||++||
T Consensus 82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~LS~G~~qrl~la 156 (243)
T TIGR01978 82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLN-----RSVNEGFSGGEKKRNEIL 156 (243)
T ss_pred eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcc-----cccccCcCHHHHHHHHHH
Confidence 99999999999999999876542211 122334567889999999973 443 3455 5999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCEEEEEeCCeEEEecChhHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM-FNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+. +|++++|++|++++.|++++..
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 157 QMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 999999999999999999999999999999999976 4899999999997 47777 8999999999999999987543
No 137
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-44 Score=369.75 Aligned_cols=217 Identities=31% Similarity=0.492 Sum_probs=188.9
Q ss_pred hhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhcccEE
Q 006505 46 SKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~ 119 (643)
+++++++++|+ .+.+++|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 45788999996 4679999999999999999999999999999999999999999999999988731 23567899
Q ss_pred EEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 120 YVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 120 yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|++|++. .+...||.||+.+..... ....++..+++.++++.+||.+..+ +++++||||||||++||++|+.+
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFEN-----KPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchhhc-----CChhhCCHHHHHHHHHHHHHhcC
Confidence 9999963 333469999998764322 2344555677899999999987664 46789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999875 999999999997 478899999999999999999998874
No 138
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4.8e-44 Score=384.01 Aligned_cols=211 Identities=25% Similarity=0.460 Sum_probs=187.0
Q ss_pred cccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hhhcccEEEEc
Q 006505 50 EAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQFRKVSGYVT 122 (643)
Q Consensus 50 ~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~ 122 (643)
|++++|+++.+ |+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 56788887664 9999999999999999999999999999999999999999999988742 13467799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+||+||+.|+.... ..++.+++++++++.+||++.. ++++.+|||||||||+||+||+.+|++|
T Consensus 82 q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~-----~~~~~~LSgGqkqRvalAraL~~~p~ll 153 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKRA---RPSERRISFERVIELLGIGHLL-----GRLPGRLSGGEKQRVAIGRALLSSPRLL 153 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhcc---ChhHHHHHHHHHHHHcCChhHh-----cCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999875422 2234456789999999998766 4467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++..
T Consensus 154 lLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 154 LMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 9999999999999999999999998766899999999997 5889999999999999999999988743
No 139
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-44 Score=384.38 Aligned_cols=206 Identities=28% Similarity=0.454 Sum_probs=184.8
Q ss_pred cccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hhhcccEEEEc
Q 006505 50 EAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQFRKVSGYVT 122 (643)
Q Consensus 50 ~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~ 122 (643)
+++++|+++.+ |+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~ 82 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVF 82 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEc
Confidence 77888887643 8999999999999999999999999999999999999999999987642 23467899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|+..+++.+||+||+.++.. ...+++++++++.+||++.. ++.+++|||||||||+|||||+.+|++|
T Consensus 83 q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~-----~~~~~~LSgGq~qRvalaraL~~~p~ll 150 (352)
T PRK11144 83 QDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLL-----DRYPGSLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred CCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhh-----hCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999988642 12345788999999998766 4467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||||||+|||+.++..+.+.|++++++.|+|+|++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 151 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 151 LMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 9999999999999999999999998766899999999997 588999999999999999999998875
No 140
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-44 Score=367.72 Aligned_cols=222 Identities=24% Similarity=0.390 Sum_probs=190.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~ 113 (643)
.+++++|++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ..
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 45778999999988889999999999999999999999999999999999986 479999999988732 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++ .|++||+.+........+.++.+++++++++.+++.+...... ++.+.+||||||||++||+
T Consensus 92 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 92 LRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHH
Confidence 5678999999998888 7999999887543212344455667899999999843211111 4567899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||+.+|++|+|||||+|||+.++..+.+.|++++ + +.|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 170 GIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999995 3 789999999997 578899999999999999999988764
No 141
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.6e-44 Score=360.37 Aligned_cols=211 Identities=33% Similarity=0.446 Sum_probs=183.5
Q ss_pred hhhhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h---h
Q 006505 44 ELSKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A---Q 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~---~ 113 (643)
+++++++++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 35778999999875 359999999999999999999999999999999999999999999999987743 1 1
Q ss_pred h-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 114 F-RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 114 ~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
. ++.++|++|++.+++.+|+.||+.+....+ ....++.++++.++++.+|+.+..+ +.+..||||||||++||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLR-GESSRQSRNGAKALLEQLGLGKRLD-----HLPAQLSGGEQQRVALA 158 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhh-----CChhhCCHHHHHHHHHH
Confidence 2 357999999999999999999998865433 2234455678899999999987664 46779999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|||++|||++ .+ +.+|++++|++|++++
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999998756899999999997 35 5699999999999875
No 142
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-45 Score=365.04 Aligned_cols=210 Identities=28% Similarity=0.446 Sum_probs=195.6
Q ss_pred cccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhh-cccEEEEccCCC
Q 006505 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQF-RKVSGYVTQRDT 126 (643)
Q Consensus 54 ~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~-~~~i~yv~Q~~~ 126 (643)
+.|...-++|+|++++.||+..|||-||||||||+++|.++.+|+.|+|+++|+++.. .++ |+.+++|+|+..
T Consensus 37 ~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 37 KTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred hhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 4556668899999999999999999999999999999999999999999999998743 233 467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 006505 127 LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206 (643)
Q Consensus 127 l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDE 206 (643)
|+|+.||.||..|+..++ +.++++.++++.++|+.+||+... +++|.+|||||||||.|||||+.+|+|||+||
T Consensus 117 LlPhrtVl~Nv~fGLev~-Gv~~~er~~~a~~~l~~VgL~~~~-----~~yp~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQ-GVPKAEREERALEALELVGLEGYA-----DKYPNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cccchhHhhhhhcceeec-CCCHHHHHHHHHHHHHHcCchhhh-----hcCcccccchHHHHHHHHHHHccCCCEEEecC
Confidence 999999999999998876 568899999999999999999988 45889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 207 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+|+|||--+.++.+.|.++.++.++|||++|||++ |+.++.|||.+|++|+++..|+|+|+.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHH
Confidence 999999999999999999999888999999999998 799999999999999999999999986
No 143
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-44 Score=360.46 Aligned_cols=217 Identities=33% Similarity=0.519 Sum_probs=192.2
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
.+++++++|+.+.+++|+|+++++||+++|+||||||||||+++|+|.++|++|+|.++|+++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (232)
T cd03300 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNY 81 (232)
T ss_pred EEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEeccc
Confidence 46788899988899999999999999999999999999999999999999999999999998753 22356799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|++||+.+....+ +...+..+++++++++.+|+++..+ ..+..||||||||++||++|+.+|++++||
T Consensus 82 ~~~~~~t~~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 82 ALFPHLTVFENIAFGLRLK-KLPKAEIKERVAEALDLVQLEGYAN-----RKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred ccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999998876543 2233445567889999999987664 466899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||+|||+.++..+.+.|++++++.|+|||+++|+++ ++.+++|++++|++|++++.|+.+++.
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999998755899999999997 488999999999999999999877654
No 144
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-44 Score=364.49 Aligned_cols=213 Identities=30% Similarity=0.450 Sum_probs=187.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~ 122 (643)
++++|++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 83 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEe
Confidence 457889999988899999999999999999999999999999999999999999999999988642 34567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
|++.+++ .||+||+.+....+ + ...+++.++++.+|++ +.. ++.+..||||||||++||+||+.+|++
T Consensus 84 q~~~~~~-~tv~e~l~~~~~~~-~----~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrl~la~al~~~p~l 152 (241)
T PRK14250 84 QQPHLFE-GTVKDNIEYGPMLK-G----EKNVDVEYYLSIVGLNKEYA-----TRDVKNLSGGEAQRVSIARTLANNPEV 152 (241)
T ss_pred cCchhch-hhHHHHHhcchhhc-C----cHHHHHHHHHHHcCCCHHHh-----hCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9998887 59999998754322 1 1235678899999996 444 346789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 153 LLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999998755899999999997 588899999999999999999988763
No 145
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-44 Score=364.93 Aligned_cols=221 Identities=22% Similarity=0.375 Sum_probs=188.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcC---CCC--CccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK---LTP--QSGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~---~~~--~~G~I~~~g~~~~~-----~~~ 114 (643)
++++++++++|+.+++|+|+|+++++||+++|+||||||||||+|+|+|+ .+| ++|+|.++|+++.. ...
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDEL 82 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHH
Confidence 45688999999888999999999999999999999999999999999997 454 48999999998742 245
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++ .|++||+.+....+.....+..+++++++++.+|+.+...+.. ++.+..||||||||++||++
T Consensus 83 ~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 83 RKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARA 160 (250)
T ss_pred hhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHH
Confidence 678999999998887 5999999887544321123334567889999999864321111 45678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 161 MAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999995 3 799999999997 588999999999999999999998874
No 146
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=9.8e-44 Score=358.79 Aligned_cols=213 Identities=43% Similarity=0.705 Sum_probs=183.5
Q ss_pred hhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCCcCCchhhcccE
Q 006505 46 SKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT---PQSGSTFVNGSPIDKAQFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~---~~~G~I~~~g~~~~~~~~~~~i 118 (643)
..+++++.++.+ +++|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 346677777753 689999999999999999999999999999999999999 8999999999987655667889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHH-HHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRL--PQAQLRARVKS-LVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~-~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+|++|++.+++.+||+||+.+......+. ..+...+++++ .++.+++.+.. ++.++.||||||||++||++|
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG-----GNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhh-----cccccCcCHHHHHHHHHHHHH
Confidence 99999999999999999999876543211 22223334555 89999987665 446789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|++||++..++.+++|++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999865 8999999999853589999999999999998765
No 147
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=365.86 Aligned_cols=222 Identities=23% Similarity=0.397 Sum_probs=190.1
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCC-----chhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPID-----KAQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~-----~~~~ 114 (643)
+++++|++++|+++++|+|+|+++++||+++|+||||||||||||+|+|+.+| ++|+|.++|+++. ...+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 46789999999888999999999999999999999999999999999999874 6999999998763 1345
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++.+||+||+.+....+...+.++.+++++++++.+|+.+...... ++.+.+|||||||||+||+|
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHHHHHHHHHH
Confidence 67899999999999999999999987654321234455667889999999842111111 45778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe------CCeEEEecChhH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA------NGSVLHHGTVDL 268 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~ 268 (643)
|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|+ +|++++.|++++
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~ 239 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHH
Confidence 9999999999999999999999999999999963 689999999997 5888999999997 799999999887
Q ss_pred HH
Q 006505 269 LS 270 (643)
Q Consensus 269 ~~ 270 (643)
+.
T Consensus 240 ~~ 241 (258)
T PRK14241 240 IF 241 (258)
T ss_pred HH
Confidence 64
No 148
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-44 Score=368.62 Aligned_cols=222 Identities=21% Similarity=0.379 Sum_probs=190.2
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~ 113 (643)
+.++++|++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| ++|+|+++|+++.. ..
T Consensus 18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~ 97 (267)
T PRK14235 18 IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE 97 (267)
T ss_pred ceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH
Confidence 357899999999988999999999999999999999999999999999999874 89999999988742 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
+++.++|++|++.+++. ||.||+.+....+.. .+.++..++++++++.+|+.+...... ++.+++||||||||++||
T Consensus 98 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 98 LRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHH
Confidence 56789999999988885 999999987643311 123444567889999999964221111 456789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|+++..|+++++.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 176 RAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999964 689999999997 478899999999999999999987763
No 149
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-44 Score=378.22 Aligned_cols=223 Identities=21% Similarity=0.255 Sum_probs=189.0
Q ss_pred hhhcccccccc----cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC----CCccEEEECCCcCCc---hh
Q 006505 45 LSKLEEAADSD----GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT----PQSGSTFVNGSPIDK---AQ 113 (643)
Q Consensus 45 ~~~~~~~~~~~----~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~----~~~G~I~~~g~~~~~---~~ 113 (643)
+++++|++++| +.+.+|+|||++|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.. ..
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 46788999998 44679999999999999999999999999999999999986 579999999998743 11
Q ss_pred ----hcccEEEEccCCC--CCCCCCHHHHHHHHHHhc-C-C---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCC
Q 006505 114 ----FRKVSGYVTQRDT--LFPLLTVEETLMFSAKLR-L-R---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGIS 182 (643)
Q Consensus 114 ----~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~~~-~-~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LS 182 (643)
.++.++||+|++. +.|.+||.+++.+..... . + ...++.++++.++++.+||.+..+ ..+.++.+||
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~LS 160 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPYELT 160 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCC
Confidence 1357999999975 678899999997643211 0 1 112344567899999999975321 1256789999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 183 GGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 183 GGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
|||||||+||+||+.+|++||+||||+|||+.++.+++++|+++.++.|.|||++|||++ .+.+++|+|++|++|++++
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G~ive 239 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCGQTVE 239 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999998766999999999997 4889999999999999999
Q ss_pred ecChhHHH
Q 006505 263 HGTVDLLS 270 (643)
Q Consensus 263 ~G~~~~~~ 270 (643)
.|+++++.
T Consensus 240 ~g~~~~i~ 247 (330)
T PRK15093 240 TAPSKELV 247 (330)
T ss_pred ECCHHHHH
Confidence 99988764
No 150
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-44 Score=372.22 Aligned_cols=217 Identities=23% Similarity=0.400 Sum_probs=187.7
Q ss_pred hhccccccccccc-----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC--------ch
Q 006505 46 SKLEEAADSDGVR-----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID--------KA 112 (643)
Q Consensus 46 ~~~~~~~~~~~~~-----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~--------~~ 112 (643)
++++|++++|+++ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 86 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHH
Confidence 5688999999764 4999999999999999999999999999999999999999999999998763 12
Q ss_pred hhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHH
Q 006505 113 QFRKVSGYVTQRDT--LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 113 ~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv 189 (643)
.+++.++|++|++. +++ .|++||+.+..... ....++..++++++++.++|. +.. ++.++.||||||||+
T Consensus 87 ~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~-----~~~~~~LS~Gq~qrv 159 (289)
T PRK13645 87 RLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPEDYV-----KRSPFELSGGQKRRV 159 (289)
T ss_pred HHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHh-----cCChhhCCHHHHHHH
Confidence 45678999999973 444 59999999865422 223444556788999999994 455 446789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 190 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++
T Consensus 160 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 160 ALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999998756899999999997 58899999999999999999998876
Q ss_pred H
Q 006505 270 S 270 (643)
Q Consensus 270 ~ 270 (643)
.
T Consensus 239 ~ 239 (289)
T PRK13645 239 F 239 (289)
T ss_pred h
Confidence 4
No 151
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.2e-43 Score=365.29 Aligned_cols=221 Identities=24% Similarity=0.387 Sum_probs=189.4
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCc-----CCc---hh--
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP-----IDK---AQ-- 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~-----~~~---~~-- 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|++ +.. ..
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 35778999999988899999999999999999999999999999999999999999999999987 532 11
Q ss_pred --hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHH
Q 006505 114 --FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 114 --~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqR 188 (643)
.++.++|++|++ .+++.+|+.||+.+...........+.++++.++++.+++.+ .. ++.+..||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~Gq~qr 159 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARI-----DDLPTTFSGGMQQR 159 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHH-----hCCCccCCHHHHHH
Confidence 245799999997 367788999999765322111123344567889999999963 44 34678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 189 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||+++ .+.+++|++++|++|++++.|++++
T Consensus 160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998756899999999997 4778999999999999999999887
Q ss_pred HH
Q 006505 269 LS 270 (643)
Q Consensus 269 ~~ 270 (643)
+.
T Consensus 239 ~~ 240 (258)
T PRK11701 239 VL 240 (258)
T ss_pred Hh
Confidence 63
No 152
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.2e-43 Score=355.00 Aligned_cols=210 Identities=27% Similarity=0.419 Sum_probs=182.7
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
++++++++|+. +++|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 79 (213)
T TIGR01277 2 ALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQEN 79 (213)
T ss_pred eEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccC
Confidence 46788888863 5789999999999999999999999999999999999999999999998743 23567799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|+.||+.+....... ..++.+++++++++.+|+++.. ++.++.||||||||++||++|+.+|++++||
T Consensus 80 ~~~~~~t~~en~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrl~laral~~~p~llllD 153 (213)
T TIGR01277 80 NLFAHLTVRQNIGLGLHPGLK-LNAEQQEKVVDAAQQVGIADYL-----DRLPEQLSGGQRQRVALARCLVRPNPILLLD 153 (213)
T ss_pred ccCCCCcHHHHHHhHhhccCC-ccHHHHHHHHHHHHHcCcHHHh-----hCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999999876432211 1223356788999999998766 4467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
|||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+
T Consensus 154 EPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 154 EPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999998755899999999997 4788999999999999998874
No 153
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=9e-44 Score=358.29 Aligned_cols=209 Identities=27% Similarity=0.494 Sum_probs=185.6
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDT 126 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~ 126 (643)
++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ++.++|++|++.
T Consensus 2 ~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~ 80 (223)
T TIGR03740 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD-LHKIGSLIESPP 80 (223)
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc-cccEEEEcCCCC
Confidence 4678888888889999999999999999999999999999999999999999999999998775332 357999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 006505 127 LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206 (643)
Q Consensus 127 l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDE 206 (643)
+++.+|++||+.+....+. .. .+++.++++.+|+++..++ .+..||||||||++||++++.+|++++|||
T Consensus 81 ~~~~~t~~~~~~~~~~~~~-~~----~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLG-LP----DSRIDEVLNIVDLTNTGKK-----KAKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred ccccCCHHHHHHHHHHHcC-CC----HHHHHHHHHHcCCcHHHhh-----hHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999999987765431 11 2467889999999876644 567999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 207 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|++++
T Consensus 151 P~~~LD~~~~~~l~~~L~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 151 PTNGLDPIGIQELRELIRSFPEQ-GITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CccCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999764 899999999997 4788999999999999999998753
No 154
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-44 Score=364.62 Aligned_cols=222 Identities=29% Similarity=0.467 Sum_probs=195.2
Q ss_pred hhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-C----CccEEEECCCcCCc---h-
Q 006505 46 SKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-P----QSGSTFVNGSPIDK---A- 112 (643)
Q Consensus 46 ~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-~----~~G~I~~~g~~~~~---~- 112 (643)
++++|++..|.. ..+++||||++++||++||+|.|||||||+.++|.|+++ | .+|+|.++|+++.. +
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 457788777754 479999999999999999999999999999999999997 4 27999999997632 2
Q ss_pred --hhc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHH
Q 006505 113 --QFR-KVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRL-PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGER 186 (643)
Q Consensus 113 --~~~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGer 186 (643)
++| +.|+|||||+ .|.|.+||.+.+.-..+.+... .+++.++++.++|+.+|+.+.. .+.+.++.+||||||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~--~~~~~YPhelSGGMr 159 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE--RRLKSYPHELSGGMR 159 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--HHHhhCCcccCCcHH
Confidence 233 5799999995 6899999999998877654433 4667788999999999998643 223779999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 187 RRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 187 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
|||.||.||+.+|++||.||||++||...+.+|+++|+++.++.|.++|++|||+.. +.++||||+||+.|++|+.|++
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMYaG~iVE~g~~ 238 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAGRIVEEGPV 238 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEECcEEEEeCCH
Confidence 999999999999999999999999999999999999999999889999999999985 8999999999999999999999
Q ss_pred hHHH
Q 006505 267 DLLS 270 (643)
Q Consensus 267 ~~~~ 270 (643)
+++.
T Consensus 239 ~~i~ 242 (316)
T COG0444 239 EEIF 242 (316)
T ss_pred HHHh
Confidence 9875
No 155
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=366.02 Aligned_cols=225 Identities=24% Similarity=0.398 Sum_probs=191.6
Q ss_pred hhhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC--C---CccEEEECCCcCCc----
Q 006505 41 AQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT--P---QSGSTFVNGSPIDK---- 111 (643)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~--~---~~G~I~~~g~~~~~---- 111 (643)
+..++++++|++++|+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 8 ~~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred cCCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 34457889999999988899999999999999999999999999999999999987 3 58999999998742
Q ss_pred -hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 112 -AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 112 -~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
...++.++|++|++.+++. ||+||+.+....+....+++.+++++++++.+++.+..... -+..+++||||||||++
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR-LHTQALSLSGGQQQRLC 165 (259)
T ss_pred HHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhh-hhCCcccCCHHHHHHHH
Confidence 2456789999999988886 99999988654332123344556788899999985421111 14577899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999963 789999999997 588999999999999999999988764
No 156
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.4e-43 Score=360.40 Aligned_cols=217 Identities=29% Similarity=0.501 Sum_probs=191.9
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++|++|++
T Consensus 2 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~ 81 (237)
T TIGR00968 2 EIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHY 81 (237)
T ss_pred EEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecCh
Confidence 46788889988899999999999999999999999999999999999999999999999988753 23456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|+.||+.+....+ +...+...+.++++++.+++.+..+ +.++.||||||||++||++|+.+|++++||
T Consensus 82 ~~~~~~t~~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qrl~laral~~~p~llllD 155 (237)
T TIGR00968 82 ALFKHLTVRDNIAFGLEIR-KHPKAKIKARVEELLELVQLEGLGD-----RYPNQLSGGQRQRVALARALAVEPQVLLLD 155 (237)
T ss_pred hhccCCcHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999998876543 2233444567889999999976664 466799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+.+++.
T Consensus 156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999998755899999999997 578999999999999999999988764
No 157
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=9.3e-44 Score=365.69 Aligned_cols=216 Identities=29% Similarity=0.467 Sum_probs=188.1
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEcc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQ 123 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q 123 (643)
+++|+++.|+++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|++|
T Consensus 3 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (256)
T TIGR03873 3 RLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQ 82 (256)
T ss_pred eEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecc
Confidence 57888899988899999999999999999999999999999999999999999999999988643 344567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 124 RDTLFPLLTVEETLMFSAKLR---LRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++.+++.+||+||+.+..... .....++..+++.++++.+++.+.. +..+..||||||||++||++|+.+|+
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 83 DSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----DRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred cCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----cCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 987788899999998753111 0111223445788999999998765 44678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+++|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+++|++++|++|+++..|++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 99999999999999999999999999864 899999999997 58899999999999999999988765
No 158
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=363.55 Aligned_cols=221 Identities=25% Similarity=0.412 Sum_probs=189.5
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC--C---CccEEEECCCcCCc-----hhhc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT--P---QSGSTFVNGSPIDK-----AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~--~---~~G~I~~~g~~~~~-----~~~~ 115 (643)
++++|++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++.. ..++
T Consensus 5 l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 84 (252)
T PRK14256 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84 (252)
T ss_pred EEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhh
Confidence 568899999988889999999999999999999999999999999999986 4 58999999988742 2457
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++|++|++.+++.+|++||+.+..........++.+++++++++.+++.+...... +..+..||||||||++||++|
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred ccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHHHHHHHH
Confidence 7899999999999999999999876543211233444567889999999864221111 346789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+++..|+++++.
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999974 589999999997 588999999999999999999988763
No 159
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=368.68 Aligned_cols=219 Identities=25% Similarity=0.395 Sum_probs=191.7
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCCcCCc---hhhcc
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS---GSTFVNGSPIDK---AQFRK 116 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~---G~I~~~g~~~~~---~~~~~ 116 (643)
++++++++++|++ +++|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.. ...++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 4678899999864 569999999999999999999999999999999999999987 999999998753 24567
Q ss_pred cEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 117 VSGYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 117 ~i~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
.+||++|++. +++..||.||+.+..... ..+.++.++++.++++.+||++.. +.+++.||||||||++||+||
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~LS~G~~qrv~laral 158 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENR-AVPRPEMIKIVRDVLADVGMLDYI-----DSEPANLSGGQKQRVAIAGIL 158 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCChhHh-----cCCcccCCHHHHHHHHHHHHH
Confidence 8999999974 667789999998865432 234556667899999999998766 447789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++. + ..+|++++|++|++++.|+++++.+
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999987568999999999974 5 5799999999999999999988753
No 160
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-43 Score=355.03 Aligned_cols=203 Identities=30% Similarity=0.458 Sum_probs=179.4
Q ss_pred cccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hhhcccEEEEc
Q 006505 50 EAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQFRKVSGYVT 122 (643)
Q Consensus 50 ~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~ 122 (643)
+++++|+++.+ |+|+++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++|++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 81 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEe
Confidence 77899998876 99999999 9999999999999999999999999999999999987632 13466899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++.+|++||+.+..... ..+..++++.++++.+|+++..+ +.+.+||||||||++||++|+.+|+++
T Consensus 82 q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 82 QQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLN-----RYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred cCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhh-----cCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998765322 23334567889999999987653 467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998755899999999997 478899999999999998765
No 161
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-43 Score=358.56 Aligned_cols=216 Identities=29% Similarity=0.491 Sum_probs=190.0
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~ 125 (643)
.+++++++|+.+ +|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++.. ...++.++|++|++
T Consensus 2 ~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~ 80 (235)
T cd03299 2 KVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNY 80 (235)
T ss_pred eeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecC
Confidence 367888888764 8999999999999999999999999999999999999999999999988754 22357899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+|+.||+.+..... ..+..+..+++.++++.+|+.+..++ .++.||||||||++||+||+.+|++++||
T Consensus 81 ~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllD 154 (235)
T cd03299 81 ALFPHMTVYKNIAYGLKKR-KVDKKEIERKVLEIAEMLGIDHLLNR-----KPETLSGGEQQRVAIARALVVNPKILLLD 154 (235)
T ss_pred ccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHHhc-----CcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 9999999999998865432 22344556678899999999876644 66899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|++++..
T Consensus 155 EPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 155 EPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999998755899999999997 578899999999999999999987653
No 162
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=361.85 Aligned_cols=220 Identities=23% Similarity=0.351 Sum_probs=188.4
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCCcCCc---hhhcccEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT---PQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~---~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
++++++++.|+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ..+++.++
T Consensus 3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 82 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG 82 (246)
T ss_pred eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE
Confidence 467899999988899999999999999999999999999999999999974 689999999998743 34567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRL-PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|++|++.+++ .|++||+.+....+... ..+..+++++++++.+++.+...... ++.++.||||||||++|||+|+.+
T Consensus 83 ~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 83 MVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998887 59999999875443111 22344567889999999953221111 456789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++.+++|++++|++|++++.|++++..
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999986 3 899999999997 488899999999999999999988764
No 163
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=362.78 Aligned_cols=221 Identities=27% Similarity=0.405 Sum_probs=187.8
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CC---CccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TP---QSGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~---~~G~I~~~g~~~~~-----~~~ 114 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++.. ..+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 567899999998889999999999999999999999999999999999985 36 48999999988732 235
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++ .||+||+.+....+.....+..++++.++++.+++.+...+. .++.++.||||||||++||+|
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHHHHHHHHHHHH
Confidence 678999999998887 799999998754331112333456788899999875321111 145778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 163 LATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999964 689999999997 588999999999999999999988763
No 164
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-44 Score=337.05 Aligned_cols=219 Identities=29% Similarity=0.471 Sum_probs=199.9
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------------
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------------- 111 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------------- 111 (643)
.+.++++.|+||...+|++||++.++|+++.|+|.|||||||+|+||.-+.+|+.|+|.+||+++..
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 4678899999999999999999999999999999999999999999999999999999999987621
Q ss_pred ---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHH
Q 006505 112 ---AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 112 ---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqR 188 (643)
..+|.+.++|+|+..|+.++||.||+.-+-.--++.++++..++++.+|.++|+.+.. +.+|..|||||+||
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~-----~~YP~~LSGGQQQR 160 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKA-----DAYPAHLSGGQQQR 160 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhh-----hcCccccCchHHHH
Confidence 2356678999999999999999999976543334557888999999999999998877 45889999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 189 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
++|||||+.+|+++++|||||+|||+-.-++++.++++|++ |+|.+++||.+.. ..+...+|+.|++|.+-++|+|++
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~F-AR~Vss~v~fLh~G~iEE~G~P~q 238 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGF-ARDVSSHVIFLHQGKIEEEGPPEQ 238 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhH-HHhhhhheEEeecceecccCChHH
Confidence 99999999999999999999999999999999999999986 9999999999986 788999999999999999999998
Q ss_pred HH
Q 006505 269 LS 270 (643)
Q Consensus 269 ~~ 270 (643)
+.
T Consensus 239 vf 240 (256)
T COG4598 239 VF 240 (256)
T ss_pred Hh
Confidence 74
No 165
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-43 Score=362.54 Aligned_cols=222 Identities=22% Similarity=0.348 Sum_probs=189.5
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~ 113 (643)
++++++|++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 356789999999888999999999999999999999999999999999999875 79999999998742 23
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
.++.++|++|++.+++ +|++||+.+..........++.+++++++++.+++.+..... -+..+.+||||||||++||+
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~lar 160 (251)
T PRK14270 83 LRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-LKKSALKLSGGQQQRLCIAR 160 (251)
T ss_pred HHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCHHHHHHHHHHH
Confidence 4677999999998888 899999998754331112344556788899999884211111 14577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 161 TIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999875 589999999997 588999999999999999999988764
No 166
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-43 Score=361.27 Aligned_cols=221 Identities=25% Similarity=0.436 Sum_probs=189.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~~ 114 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 46789999999888999999999999999999999999999999999999874 79999999988642 235
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++ .|++||+.+..........+..++.++++++.+|+.+..+. ..++.+.+||||||||++||+|
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-ELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-HHhCChhhcCHHHHHHHHHHHH
Confidence 678999999998888 79999999875433212333445668889999998542211 1255788999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|+++..|+++++.
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999864 689999999997 488999999999999999999988764
No 167
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3e-43 Score=357.63 Aligned_cols=205 Identities=34% Similarity=0.510 Sum_probs=180.0
Q ss_pred ccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEc-cCCCCCC
Q 006505 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVT-QRDTLFP 129 (643)
Q Consensus 53 ~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~-Q~~~l~~ 129 (643)
++|+.+++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|++... ..+++.++|++ |++.+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 57788899999999999999999999999999999999999999999999999987532 34567899998 5567888
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 006505 130 LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS 209 (643)
Q Consensus 130 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts 209 (643)
.+|++||+.+....+ ....++..++++++++.+|+.+..++ .+..||||||||++||++|+.+|++++|||||+
T Consensus 109 ~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 109 DLPVIDSFYLLAAIY-DLPPARFKKRLDELSELLDLEELLDT-----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred CCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 999999998876543 22344455678899999999877644 567999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 210 GLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 210 gLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999998766899999999997 578899999999999998765
No 168
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=364.60 Aligned_cols=224 Identities=22% Similarity=0.367 Sum_probs=188.9
Q ss_pred hhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----
Q 006505 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK----- 111 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~----- 111 (643)
..++++++|++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 3456889999999998899999999999999999999999999999999999864 689999999988742
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
..+++.++|++|++.+++. |++||+.+.............++.+.+.++.+++.+..... .++.+..||||||||++|
T Consensus 98 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~qrl~l 175 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGGQQQRLCI 175 (268)
T ss_pred HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHHHHHHHHH
Confidence 2356789999999988885 99999988654321112233455678889999885211111 145678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 176 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 176 ARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999964 689999999997 588899999999999999999987764
No 169
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-43 Score=366.29 Aligned_cols=218 Identities=24% Similarity=0.375 Sum_probs=188.3
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC--------ccEEEECCCcCCc---hhh
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ--------SGSTFVNGSPIDK---AQF 114 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~--------~G~I~~~g~~~~~---~~~ 114 (643)
++++|++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. ...
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRL 81 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHH
Confidence 56789999999889999999999999999999999999999999999999998 9999999988742 345
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRL---RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
++.++|++|++.+++.+||+||+.+...... ....++.+++++++++.+|+.+.. ++.+..|||||||||+|
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-----GRDVTTLSGGELARVQF 156 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-----cCCcccCCHHHHHHHHH
Confidence 6678999999876666899999987532110 111133456788999999998765 44678999999999999
Q ss_pred HHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 192 GFDVI---------HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 192 a~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
|++|+ .+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~ 235 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVA 235 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEE
Confidence 99999 5999999999999999999999999999998755899999999997 5788999999999999999
Q ss_pred ecChhHH
Q 006505 263 HGTVDLL 269 (643)
Q Consensus 263 ~G~~~~~ 269 (643)
.|+++++
T Consensus 236 ~g~~~~~ 242 (272)
T PRK13547 236 HGAPADV 242 (272)
T ss_pred ecCHHHH
Confidence 9998776
No 170
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-43 Score=363.97 Aligned_cols=223 Identities=22% Similarity=0.328 Sum_probs=191.5
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----h
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----A 112 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~ 112 (643)
..+++++|++++|+.+++|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.++|+++.. .
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 346789999999988999999999999999999999999999999999999986 479999999988742 2
Q ss_pred hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 113 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
..++.++|++|++.+++ .||+||+.++........+++.++++.++++.+++.+..+... ++.+++||||||||++||
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIA 175 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHH
Confidence 35678999999988888 5999999987543211234445667889999999854322212 557889999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++|+.+|++++|||||+|||+.++..+.+.|++++ + +.|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 176 RAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999995 3 789999999997 588999999999999999999988763
No 171
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-43 Score=359.58 Aligned_cols=220 Identities=25% Similarity=0.403 Sum_probs=187.5
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hhhc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~~~ 115 (643)
+++++++++|+++++++|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ...+
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14240 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLR 83 (250)
T ss_pred EEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHh
Confidence 5678999999888999999999999999999999999999999999998763 69999999988742 2456
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++|++|++.+++ +|++||+.+....+...+.++.+++++++++.+++.+...... ++.+.+||||||||++||++|
T Consensus 84 ~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 84 KRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred ccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHHHHHHHHHH
Confidence 78999999998888 8999999987543321234445677888999998753211111 456789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ .+.+++|++++|++|+++..|+++++.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999995 3 789999999997 588999999999999999999988763
No 172
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-43 Score=364.13 Aligned_cols=218 Identities=23% Similarity=0.347 Sum_probs=190.3
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
++++++++++|+. +.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.. ...++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 4678899999864 359999999999999999999999999999999999999999999999998743 3456789
Q ss_pred EEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 119 GYVTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 119 ~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
+|++|++. .++..||.||+.+..... ..+.++..++++++++.+||.+..+ +++..||||||||++||++|+.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~lAraL~~ 157 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQ-GIPREEMIKRVDEALLAVNMLDFKT-----REPARLSGGQKQRVAVAGIIAL 157 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHhHhh-----CCcccCCHHHHHHHHHHHHHHc
Confidence 99999974 566789999998765432 2244455667899999999987664 4678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+++||||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|+++..|+++++.
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999987569999999999974 54 69999999999999999998764
No 173
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-43 Score=359.43 Aligned_cols=222 Identities=23% Similarity=0.386 Sum_probs=188.0
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-----SGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-----~G~I~~~g~~~~~-----~~~ 114 (643)
+++++|++++|+++++|+|+|+++++||+++|+||||||||||+|+|+|+++|. +|+|.++|+++.. ..+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 456889999998889999999999999999999999999999999999998864 8999999988642 245
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++.+|+.||+.+..........++..+.++++++.+++.+..... .+..++.||||||||++||++
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHHHHHHHHHHHH
Confidence 6779999999999999999999987654321112334456677788888764211111 145678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|++++.|+++++.
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999863 699999999997 588899999999999999999988764
No 174
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-43 Score=361.33 Aligned_cols=223 Identities=22% Similarity=0.374 Sum_probs=191.5
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-----SGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-----~G~I~~~g~~~~~-----~~~ 114 (643)
+++++|++++|+.+.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ..+
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 467899999998888999999999999999999999999999999999999985 8999999987631 245
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++ +|++||+.+........+..+..+++.++++.+++.+..+.. .++.+..||||||||++||++
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-IHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHHHHHHHHHHHH
Confidence 677999999988888 899999988654321113334456788999999985422211 155778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-----CeEEEecChhHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-----GSVLHHGTVDLL 269 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-----G~iv~~G~~~~~ 269 (643)
|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++|||++ ++.+++|++++|++ |++++.|+++++
T Consensus 165 l~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 243 (261)
T PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKI 243 (261)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHH
Confidence 999999999999999999999999999999987655899999999997 58899999999999 999999999887
Q ss_pred H
Q 006505 270 S 270 (643)
Q Consensus 270 ~ 270 (643)
.
T Consensus 244 ~ 244 (261)
T PRK14258 244 F 244 (261)
T ss_pred H
Confidence 4
No 175
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-43 Score=363.84 Aligned_cols=225 Identities=24% Similarity=0.424 Sum_probs=193.3
Q ss_pred hhhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc----
Q 006505 41 AQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK---- 111 (643)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~---- 111 (643)
.+.+++.+++++++|+.+++|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 17 ~~~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 17 AAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred ccCcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 345678999999999999999999999999999999999999999999999999985 69999999988742
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
..+++.++|++|++.+++ .|++||+.+........+.++.++++.++++.+++.+..++.. ++.+..||||||||++|
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLCL 174 (276)
T ss_pred HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHHH
Confidence 245678999999998888 7999999876533211234455566788999999875332211 45678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999975 489999999997 588999999999999999999988764
No 176
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.1e-43 Score=356.15 Aligned_cols=200 Identities=31% Similarity=0.461 Sum_probs=174.5
Q ss_pred eeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHH
Q 006505 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFS 140 (643)
Q Consensus 61 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~ 140 (643)
|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.... ...+|++|++.+++.+||+||+.+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999875322 2248999999999999999999886
Q ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 006505 141 AKLRL-RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQI 219 (643)
Q Consensus 141 ~~~~~-~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i 219 (643)
..... ...+++.++++.++++.+|+++..+ +.+.+||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 153 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAAD-----KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL 153 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHHc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH
Confidence 42111 2234455667899999999987664 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 220 IDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 220 ~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|++.+
T Consensus 154 ~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 154 QEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCcee
Confidence 99999998766899999999997 5889999999999999998886543
No 177
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-43 Score=359.01 Aligned_cols=219 Identities=22% Similarity=0.389 Sum_probs=186.9
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCC----chhhcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPID----KAQFRK 116 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~----~~~~~~ 116 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++. ....++
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 83 (249)
T PRK14253 4 FNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI 83 (249)
T ss_pred EEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh
Confidence 5678999999888999999999999999999999999999999999999886 5999999998763 134567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
.++|++|++.+++ .||.||+.+.........++..++++.+.++.+++.+...... +..+.+|||||||||+||++|+
T Consensus 84 ~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 84 KVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred heeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHH
Confidence 8999999999888 7999999886543211123344567888899988754221111 4567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++..|+++++
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999975 589999999997 58899999999999999999998765
No 178
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-43 Score=358.37 Aligned_cols=221 Identities=23% Similarity=0.338 Sum_probs=188.3
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-----SGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-----~G~I~~~g~~~~~-----~~~ 114 (643)
++.+++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ..+
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 466889999998888999999999999999999999999999999999999987 6999999987632 245
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++. |++||+.+....+....+++.++.++++++.+++.+..... .++.+..||||||||++||++
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCHHHHHHHHHHHH
Confidence 7789999999998885 99999998764332112233445677888888875422111 256788999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ .+.+++|++++|++|++++.|+++++.
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 162 LAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999984 3 899999999997 588899999999999999999988764
No 179
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-43 Score=358.85 Aligned_cols=219 Identities=22% Similarity=0.352 Sum_probs=186.0
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hhhcc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQFRK 116 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~~~~ 116 (643)
++++++++|+++++|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ...++
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 86 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRA 86 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhh
Confidence 46788888988899999999999999999999999999999999999986 469999999987632 23567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
.++|++|++.+++. |++||+.+....+.. ...++.++.+.++++.+|+.+...+.. +..+.+||||||||++||++|
T Consensus 87 ~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 87 KVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHH
Confidence 89999999988886 999999886443311 123344567889999999965321111 446789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++|+|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999985 3 899999999997 578899999999999999999987663
No 180
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.1e-43 Score=358.90 Aligned_cols=220 Identities=28% Similarity=0.420 Sum_probs=186.6
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCc-----CCc---hh---
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP-----IDK---AQ--- 113 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~-----~~~---~~--- 113 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++ +.. ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 4678999999988889999999999999999999999999999999999999999999999976 432 11
Q ss_pred -hcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHH
Q 006505 114 -FRKVSGYVTQRDT--LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 114 -~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv 189 (643)
.++.++|++|++. +++.+|+.||+.+...........+..+++.++++.+|+.+ .. +..++.|||||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRI-----DDLPRAFSGGMQQRL 157 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhh-----hcCchhcCHHHHHHH
Confidence 2356999999974 45667999999764321111112234567889999999963 44 446789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 190 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||+++ .+.+++|++++|++|++++.|+++++
T Consensus 158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999987656899999999997 57789999999999999999998766
Q ss_pred H
Q 006505 270 S 270 (643)
Q Consensus 270 ~ 270 (643)
.
T Consensus 237 ~ 237 (253)
T TIGR02323 237 L 237 (253)
T ss_pred h
Confidence 4
No 181
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-43 Score=362.17 Aligned_cols=224 Identities=25% Similarity=0.380 Sum_probs=190.8
Q ss_pred hhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----
Q 006505 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK----- 111 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~----- 111 (643)
+.++++++|++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 22 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 22 EQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 34567899999999888999999999999999999999999999999999999874 79999999988742
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
..+++.++|++|++.+++. |++||+.+.........++..+++++++++.+++.+...+. .++.+.+||||||||++|
T Consensus 102 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qrv~l 179 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDR-LHENAFGLSGGQQQRLVI 179 (272)
T ss_pred HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHH-hhCCcccCCHHHHHHHHH
Confidence 2456789999999988886 99999988754331112333456788899999986421111 145678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 180 aral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999999999999999999999999974 689999999997 478899999999999999999987763
No 182
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-43 Score=358.03 Aligned_cols=221 Identities=27% Similarity=0.388 Sum_probs=187.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~~ 114 (643)
++++++++++|+.+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ...
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 4678999999988899999999999999999999999999999999999987 479999999988632 235
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++ .||+||+.+..........+..+++++++++.+++...... ..+..+.+||||||||++||+|
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD-NLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHH-HhccChhhCCHHHHHHHHHHHH
Confidence 677999999998887 69999998765432111233345678889999998421111 1145678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999853 689999999997 488899999999999999999988763
No 183
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4.9e-43 Score=352.26 Aligned_cols=208 Identities=28% Similarity=0.520 Sum_probs=181.9
Q ss_pred hhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhhc
Q 006505 46 SKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~~ 115 (643)
++++++++.|+. +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 346778777764 679999999999999999999999999999999999999999999999998742 1356
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++|++|++.+++.+|+.||+.+..........++..++++++++.+|+.+..++ .++.||||||||++||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-----YPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-----ChhhCCHHHHHHHHHHHHH
Confidence 78999999999999899999999876543222345556678999999999876644 6689999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ +.+++|++++|++|++
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999998756899999999985 4589999999999986
No 184
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-43 Score=362.92 Aligned_cols=221 Identities=21% Similarity=0.380 Sum_probs=188.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCC-----chh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPID-----KAQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~-----~~~ 113 (643)
.++++++++++|+.+.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++. ...
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~ 91 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE 91 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHH
Confidence 45789999999998899999999999999999999999999999999999987 58999999998763 234
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++. ||+||+.+.+..+. .. ++.++++.++++.+++....... .++.+.+||||||||++||+
T Consensus 92 ~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrl~lar 167 (269)
T PRK14259 92 VRRRIGMVFQQPNPFPK-SIYENIAFGARING-YT-GDMDELVERSLRKAAVWDECKDK-LNESGYSLSGGQQQRLCIAR 167 (269)
T ss_pred HhhceEEEccCCccchh-hHHHHHhhhhhhcC-Cc-HHHHHHHHHHHHHhCCcchhhhh-hCCCcccCCHHHHHHHHHHH
Confidence 56789999999988885 99999998765431 12 23345678889998874211111 15577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-----------CeEEE
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-----------GSVLH 262 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-----------G~iv~ 262 (643)
||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++ |++++
T Consensus 168 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~ 244 (269)
T PRK14259 168 TIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVE 244 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEE
Confidence 99999999999999999999999999999999953 689999999997 58899999999996 67899
Q ss_pred ecChhHHHH
Q 006505 263 HGTVDLLSV 271 (643)
Q Consensus 263 ~G~~~~~~~ 271 (643)
.|+++++.+
T Consensus 245 ~~~~~~~~~ 253 (269)
T PRK14259 245 FNETKKIFN 253 (269)
T ss_pred eCCHHHHHh
Confidence 999988753
No 185
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=7.3e-43 Score=361.41 Aligned_cols=220 Identities=28% Similarity=0.419 Sum_probs=189.6
Q ss_pred hhhccccccccc---------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----
Q 006505 45 LSKLEEAADSDG---------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---- 111 (643)
Q Consensus 45 ~~~~~~~~~~~~---------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---- 111 (643)
+++++|++++|+ ++.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 456888888886 4789999999999999999999999999999999999999999999999987642
Q ss_pred --hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHH
Q 006505 112 --AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGER 186 (643)
Q Consensus 112 --~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGer 186 (643)
...++.++|++|++ .+++..|+.|++.+..........++..++++++++.+|+. +.. +..++.||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~~LS~Ge~ 157 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVL-----DKRPPQLSGGQL 157 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHh-----hCCCccCChHHH
Confidence 13467899999997 46778899999976543211223444556789999999996 444 446789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 187 RRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 187 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||+++ .+.+++|++++|++|++++.|++
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEeeeCCh
Confidence 99999999999999999999999999999999999999998766899999999997 57889999999999999999998
Q ss_pred hHHH
Q 006505 267 DLLS 270 (643)
Q Consensus 267 ~~~~ 270 (643)
+++.
T Consensus 237 ~~~~ 240 (268)
T PRK10419 237 GDKL 240 (268)
T ss_pred hhcc
Confidence 7754
No 186
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-43 Score=332.43 Aligned_cols=218 Identities=29% Similarity=0.463 Sum_probs=196.8
Q ss_pred hhcccccccccccc--eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEcc
Q 006505 46 SKLEEAADSDGVRR--VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q 123 (643)
+.+++++.+|+.+. +|+|+|++|.+||.++++||||||||||||+++|+.+|..|+|.+||++++... ..-|.|+|
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg--aergvVFQ 81 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG--AERGVVFQ 81 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC--ccceeEec
Confidence 45678888888887 999999999999999999999999999999999999999999999999986432 23589999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
++.++|.+||.+|+.|+.+++ +.++.++.+++.+.+..+||++..+ +++-+|||||||||.|||||+.+|++|+
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~-Gi~k~~R~~~a~q~l~~VgL~~~~~-----~~i~qLSGGmrQRvGiARALa~eP~~Ll 155 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLR-GIEKAQRREIAHQMLALVGLEGAEH-----KYIWQLSGGMRQRVGIARALAVEPQLLL 155 (259)
T ss_pred cCccchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhCcccccc-----cceEeecchHHHHHHHHHHhhcCcceEe
Confidence 999999999999999999887 5678888999999999999998764 4678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC--CeEEEecChhHHHHH
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN--GSVLHHGTVDLLSVS 272 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~~ 272 (643)
||||+++||.-++.++.++|-++.++.|+.++++||+.+ |..-+++++++|+. |+++..-+++=...|
T Consensus 156 LDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 156 LDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred ecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 999999999999999999999999999999999999998 57778999999984 899988777633333
No 187
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-43 Score=358.09 Aligned_cols=222 Identities=23% Similarity=0.357 Sum_probs=188.6
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC--C---CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT--P---QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~--~---~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ | ++|+|.++|+++.. ..
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 35778999999998899999999999999999999999999999999999875 3 48999999988742 23
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
.++.++|++|++.+++. ||+||+.+....+......+.++.+.++++.+++.+...+. .++.+..||||||||++||+
T Consensus 85 ~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDR-LHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHH-hhcChhhCCHHHHHHHHHHH
Confidence 46779999999988885 99999998765432122334456788899998885321111 15577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 163 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 163 TLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999999999974 589999999997 477899999999999999999988764
No 188
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=337.71 Aligned_cols=218 Identities=30% Similarity=0.486 Sum_probs=191.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
+++.+|++.+..+|.+|++||++++|||++||+||||||||||||.|+|...|++|++.+||.+++. .+..++-+.+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 3567899999999999999999999999999999999999999999999999999999999998854 4556677999
Q ss_pred ccCCCC-CCCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc--
Q 006505 122 TQRDTL-FPLLTVEETLMFSAKLRL-RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH-- 197 (643)
Q Consensus 122 ~Q~~~l-~~~lTv~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~-- 197 (643)
||+..+ || .||.|-+.++..-.. +....+..+.+++.|...++.+.+. +....|||||||||.+||.|++
T Consensus 81 pQ~s~laFp-Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-----R~y~~LSGGEqQRVqlARvLaQl~ 154 (259)
T COG4559 81 PQNSSLAFP-FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-----RDYRTLSGGEQQRVQLARVLAQLW 154 (259)
T ss_pred ccCcccccc-eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-----cchhhcCchHHHHHHHHHHHHHcc
Confidence 999877 55 599999999864332 1222345566889999999998874 4567999999999999999986
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 ----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++.||||||||.||...+..++++.++++++ |..|+++.||++. ...+||||++|++||++..|+|+++.
T Consensus 155 ~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNL-AAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred CCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchH-HHHhhheeeeeeCCeEeecCCHHHhc
Confidence 45689999999999999999999999999986 8999999999996 78999999999999999999999875
No 189
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=7.4e-43 Score=347.10 Aligned_cols=199 Identities=29% Similarity=0.499 Sum_probs=174.5
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---c----hhhcccEEE
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---K----AQFRKVSGY 120 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~----~~~~~~i~y 120 (643)
++|+++.|+++++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. . ...++.++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 467888888889999999999999999999999999999999999999999999999999853 1 124578999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++|++.+++.+|++||+.+..... ...+++..++++++++.+|+++..+ +.+.+||||||||++||+||+.+|+
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~lS~G~~qr~~laral~~~p~ 154 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNLKLK-----QKIYELSGGEQQRVALARAILKDPP 154 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCchhhhc-----CChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999875432 2234455677899999999987664 4667999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
+++|||||+|||+.++..+.+.|++++++ |.|||++||+++ ..+.+|++++|
T Consensus 155 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 155 LILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999875 899999999986 34789999875
No 190
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=9.4e-43 Score=352.61 Aligned_cols=207 Identities=25% Similarity=0.416 Sum_probs=177.4
Q ss_pred eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC----CccEEEECCCcCCchhh-cccEEEEccCCC--CCCCCC
Q 006505 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP----QSGSTFVNGSPIDKAQF-RKVSGYVTQRDT--LFPLLT 132 (643)
Q Consensus 60 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~----~~G~I~~~g~~~~~~~~-~~~i~yv~Q~~~--l~~~lT 132 (643)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++..... ++.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57999999999999999999999999999999999999 89999999998754333 357999999974 567789
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 006505 133 VEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLD 212 (643)
Q Consensus 133 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD 212 (643)
+.|++.+..... ....++.++++.++++.+++.+.. ...++.+..|||||||||+||++|+.+|++++|||||+|||
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 81 MGNHAIETLRSL-GKLSKQARALILEALEAVGLPDPE--EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred HHHHHHHHHHHc-CccHHHHHHHHHHHHHHcCCCchH--HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 999998765432 122344456789999999997320 11145678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 213 STSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 213 ~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999998755899999999997 588899999999999999999988764
No 191
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=356.82 Aligned_cols=226 Identities=23% Similarity=0.409 Sum_probs=192.0
Q ss_pred hhhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECC------CcCC---c
Q 006505 41 AQEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG------SPID---K 111 (643)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g------~~~~---~ 111 (643)
...+++.+++++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| +++. .
T Consensus 6 ~~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 6 SAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hhhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 355778999999999999999999999999999999999999999999999999999986666555 5442 2
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
...++.++|++|++.+++.+|++||+.+.........+++.++++.++++.+++.+...... +..+..||||||||++|
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCHHHHHHHHH
Confidence 34567899999999999999999999987543222234455677899999999964211111 44678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+++|++++|++|+++..|++++..
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999964 699999999997 477899999999999999999988764
No 192
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=356.30 Aligned_cols=222 Identities=27% Similarity=0.391 Sum_probs=186.5
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC--C---CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT--P---QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~--~---~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++.. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 45778999999998899999999999999999999999999999999999865 4 48999999987732 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++ .|++||+.+....+.....+..++++.+.++.+++....... -+..+.+||||||||++||+
T Consensus 84 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 84 LRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred hcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHHHHHHHHHHH
Confidence 5678999999998888 699999998754332112233345677788888764211111 14577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|++|+++..|++.+..
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999965 589999999997 588899999999999999999988764
No 193
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=395.65 Aligned_cols=219 Identities=22% Similarity=0.362 Sum_probs=193.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCCcCCch----hhccc
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP--QSGSTFVNGSPIDKA----QFRKV 117 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~--~~G~I~~~g~~~~~~----~~~~~ 117 (643)
++++++|++++|+++.+|+|+||++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++... ..++.
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 357889999999988999999999999999999999999999999999999986 799999999987431 23567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRL-R-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~-~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
++||+|++.+++.+||+||+.++...+. . .+.++.+++++++++.+|+.+.. ++++++|||||||||+||+||
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGqkqrv~la~al 158 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-----ATPVGNLGLGQQQLVEIAKAL 158 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-----ccchhhCCHHHHHHHHHHHHH
Confidence 9999999999999999999998754321 1 13344556789999999997666 446789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ .+.++||++++|++|++++.|+++++
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999976 4999999999997 58889999999999999999998765
No 194
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3e-43 Score=395.25 Aligned_cols=219 Identities=24% Similarity=0.395 Sum_probs=192.8
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h-hhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A-QFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~-~~~~~i~ 119 (643)
+++++++++++|+++++|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. . ..++.++
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 35778999999998899999999999999999999999999999999999999999999999988742 1 2356799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRL--R-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~--~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
|++|++.+++.+||+||+.++..... . .+.++.+++++++++.+|+.+.. ++++.+|||||||||+||+||+
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~la~al~ 157 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-----DKLVGELSIGEQQMVEIAKVLS 157 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-----cCchhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999998643221 1 12344556789999999998766 4467899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|+++..|+++++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 158 FESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999764 999999999997 58899999999999999999988764
No 195
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=362.78 Aligned_cols=224 Identities=23% Similarity=0.362 Sum_probs=188.6
Q ss_pred hhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----
Q 006505 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK----- 111 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~----- 111 (643)
..+++++++++++|+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 3446789999999988889999999999999999999999999999999999864 489999999987632
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
..+++.++|++|++.+++. ||.||+.+....+...+.+..++++.++++.+|+.+..... .++.+..||||||||++|
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~L 193 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDR-LDKNALGLSGGQQQRLCV 193 (286)
T ss_pred HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhH-hhCChhhCCHHHHHHHHH
Confidence 2356789999999988885 99999998754331112333456788889999874211011 145678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 194 AraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 194 ARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999864 689999999997 578899999999999999999988764
No 196
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=358.30 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=188.5
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~~ 114 (643)
++++++++++|+++.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+| ++|+|.++|+++.. ...
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 46789999999888899999999999999999999999999999999999885 48999999987632 245
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++ .|++||+.+....+...++.+..++++++++.+|+.+.... ..+..+.+||||||||++||+|
T Consensus 87 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 87 RRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-KLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHHHHHHHHHHHH
Confidence 678999999998888 79999998875443222334445678889999988432111 1155788999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe-----CCeEEEecChhHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA-----NGSVLHHGTVDLL 269 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-----~G~iv~~G~~~~~ 269 (643)
|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|+ +|++++.|+++++
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 9999999999999999999999999999999864 589999999998 5889999999998 5999999999886
Q ss_pred H
Q 006505 270 S 270 (643)
Q Consensus 270 ~ 270 (643)
.
T Consensus 242 ~ 242 (259)
T PRK14260 242 F 242 (259)
T ss_pred h
Confidence 4
No 197
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=360.34 Aligned_cols=222 Identities=22% Similarity=0.367 Sum_probs=187.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.. ..
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 36789999999988899999999999999999999999999999999999987 689999999988732 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++. ||+||+.++...+....++..++.+.+.++.+++.+...... +..+.+||||||||++||+
T Consensus 103 ~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHHHHHHH
Confidence 56789999999988875 999999987543211123333456778888876532111111 4577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|++++.|+++++.
T Consensus 181 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 181 CLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999964 699999999997 478899999999999999999987763
No 198
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.5e-42 Score=356.26 Aligned_cols=219 Identities=24% Similarity=0.389 Sum_probs=186.1
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC----CccEEEECCCcCCchhh-cccEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP----QSGSTFVNGSPIDKAQF-RKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~----~~G~I~~~g~~~~~~~~-~~~i~ 119 (643)
.++++|++++| ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..... ++.++
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 35688999998 56899999999999999999999999999999999999999 89999999998754333 35799
Q ss_pred EEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 120 YVTQRDT--LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 120 yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
|++|++. +.+.+|+.+++.+.+... .... .++++.++++.+++.+..+ ..++.+..||||||||++||+||+.
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~l~~~~l~~~~~--~~~~~~~~LS~Gq~qrv~laral~~ 157 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLAL-GKPA--DDATLTAALEAVGLENAAR--VLKLYPFEMSGGMLQRMMIALALLC 157 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHc-CCCh--HHHHHHHHHHHcCCCChhh--hhhcCCcccCHHHHHHHHHHHHHhc
Confidence 9999974 456689999987654322 1122 2367889999999975210 1145678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 158 EAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999998766899999999997 477899999999999999999988764
No 199
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-43 Score=394.00 Aligned_cols=219 Identities=25% Similarity=0.378 Sum_probs=192.3
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---h-hhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---A-QFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~-~~~~~i~ 119 (643)
++++++|++++|+++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. . ..++.++
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 35788999999998899999999999999999999999999999999999999999999999988743 1 2345799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhc---CC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLR---LR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~---~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
||+|++.+++.+||+||+.++.... .+ .+.++.+++++++++.+|+.+.. ++++++|||||||||+||+
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LSgG~~qrv~ia~ 158 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-----DEKVANLSISHKQMLEIAK 158 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-----ccchhhCCHHHHHHHHHHH
Confidence 9999999999999999998754211 01 12334556789999999998765 4467899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ .+.++||++++|++|++++.|+++++
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999999999999999999999875 999999999997 58889999999999999999998764
No 200
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=379.12 Aligned_cols=224 Identities=29% Similarity=0.450 Sum_probs=201.6
Q ss_pred hhhccccccccccc----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC----ccEEEECCCcCCc---h-
Q 006505 45 LSKLEEAADSDGVR----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ----SGSTFVNGSPIDK---A- 112 (643)
Q Consensus 45 ~~~~~~~~~~~~~~----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~----~G~I~~~g~~~~~---~- 112 (643)
+++++|+++.|... .+++||||++++||++||+|.|||||||+.++|.|++++. +|+|.++|+++.. .
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 67889998887543 6999999999999999999999999999999999999877 8999999997632 1
Q ss_pred --h-hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 113 --Q-FRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 113 --~-~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
. ..+.|+|+||++ .+.|-+|+.+.+.-....+...+.++.++++.++|+++||.+.... ++++++|||||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQ 161 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQ 161 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHH
Confidence 2 236799999996 5778899999999887777655688889999999999999876644 6799999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||.||+||+++|++|++||||++||+.++.+|+++|+++.++.|.++|++|||+.. +.++||||+||++|++++.|+++
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKGEIVETGPTE 240 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999985 88999999999999999999999
Q ss_pred HHHHH
Q 006505 268 LLSVS 272 (643)
Q Consensus 268 ~~~~~ 272 (643)
++.+.
T Consensus 241 ~i~~~ 245 (539)
T COG1123 241 EILSN 245 (539)
T ss_pred HHHhc
Confidence 98753
No 201
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=398.06 Aligned_cols=221 Identities=26% Similarity=0.345 Sum_probs=194.0
Q ss_pred hhhhccccccccc-----------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-
Q 006505 44 ELSKLEEAADSDG-----------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK- 111 (643)
Q Consensus 44 ~~~~~~~~~~~~~-----------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~- 111 (643)
++++++++++.|+ .+.+|+||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 5788999999985 2469999999999999999999999999999999999999999999999987742
Q ss_pred -----hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCH
Q 006505 112 -----AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISG 183 (643)
Q Consensus 112 -----~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSG 183 (643)
..+++.++||+|++ .+++.+||.|++.+....+....+++.++++.++++.+||. +.. ++++++|||
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~-----~~~~~~LSg 466 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHA-----WRYPHEFSG 466 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHh-----hCCcccCCH
Confidence 12466899999997 58999999999998654331113445567899999999995 444 457889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe
Q 006505 184 GERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263 (643)
Q Consensus 184 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 263 (643)
||||||+||+||+.+|++|||||||+|||+.++.++.++|++++++.|.|||++|||++ .+.++||+|++|++|++++.
T Consensus 467 GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999998766999999999997 58899999999999999999
Q ss_pred cChhHHH
Q 006505 264 GTVDLLS 270 (643)
Q Consensus 264 G~~~~~~ 270 (643)
|+++++.
T Consensus 546 g~~~~i~ 552 (623)
T PRK10261 546 GPRRAVF 552 (623)
T ss_pred cCHHHHh
Confidence 9998874
No 202
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.3e-43 Score=324.38 Aligned_cols=199 Identities=36% Similarity=0.540 Sum_probs=180.7
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------hhh-cccEEEEccCCCCC
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQF-RKVSGYVTQRDTLF 128 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------~~~-~~~i~yv~Q~~~l~ 128 (643)
+.-.||++|++.|++||-+||+|||||||||||-+++|+..|++|+|.+.|+++.. ..+ .+++|+|+|...+.
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li 100 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI 100 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence 44679999999999999999999999999999999999999999999999998743 233 36799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 006505 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208 (643)
Q Consensus 129 ~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPt 208 (643)
|+||..||+..++.++.. +..+..+.+.++|+.+||.+.. +.+|.+|||||+|||+||||++..|++||.||||
T Consensus 101 p~ltAlENV~lPleL~ge-~~~~~~~~A~~lL~~vGLg~Rl-----~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPT 174 (228)
T COG4181 101 PNLTALENVALPLELRGE-SSADSRAGAKALLEAVGLGKRL-----THYPAQLSGGEQQRVALARAFAGRPDVLFADEPT 174 (228)
T ss_pred ccchhhhhccchhhhcCC-ccccHHHHHHHHHHHhCccccc-----ccCccccCchHHHHHHHHHHhcCCCCEEeccCCC
Confidence 999999999999988743 3444566788999999998876 5588999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
-+||..+..+|.++|-.+.++.|.|.|++||||. +..-|||.+-|.+|+++.
T Consensus 175 GNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 175 GNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999985 578899999999999874
No 203
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=359.65 Aligned_cols=222 Identities=23% Similarity=0.398 Sum_probs=188.8
Q ss_pred hhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----
Q 006505 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK----- 111 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~----- 111 (643)
..+++++++++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 4567889999999988899999999999999999999999999999999999987 689999999987632
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
..+++.++|++|++.+++. ||+||+.+....+. .+. +.+++++++++.+|+.+...... ++++.+||||||||++|
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG-YDG-DIDERVEESLRRAALWDEVKDQL-DSSGLDLSGGQQQRLCI 191 (285)
T ss_pred HhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC-CcH-HHHHHHHHHHHHcCCCchhHHHH-hCCcccCCHHHHHHHHH
Confidence 2456789999999988886 99999998755432 222 34567899999999853211111 45678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEE-EEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSIL-MLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G~iv~~G~~~~~~ 270 (643)
|++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+++|+++ +|++|+++..|+++++.
T Consensus 192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999975 479999999997 5788999975 67999999999987753
No 204
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1e-42 Score=379.65 Aligned_cols=224 Identities=31% Similarity=0.462 Sum_probs=199.9
Q ss_pred hhhhhhcccccccccc-----------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcC-
Q 006505 42 QEELSKLEEAADSDGV-----------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI- 109 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~-----------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~- 109 (643)
..++++++|+++.|.. ..+++||||++++||++||+|+||||||||.|+|+|+.+|++|+|.++|.+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 3466789999998873 3689999999999999999999999999999999999999999999999873
Q ss_pred -Cc---hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCH
Q 006505 110 -DK---AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISG 183 (643)
Q Consensus 110 -~~---~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSG 183 (643)
+. ...++.+-+|+||+ .|.|.+||++++............++.++++.++++.+||... +.++++.+|||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSG 432 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----FLDRYPHELSG 432 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----HHhcCchhcCc
Confidence 11 34567888999986 5899999999999888766544456777889999999999842 33679999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe
Q 006505 184 GERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263 (643)
Q Consensus 184 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 263 (643)
|||||++|||||+.+|+++++|||||.||+..+.+++++|+++.++.|.|.|++|||++. +..+||||++|++|++|+.
T Consensus 433 GQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred chhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEECCeEEEe
Confidence 999999999999999999999999999999999999999999999999999999999985 8899999999999999999
Q ss_pred cChhHHH
Q 006505 264 GTVDLLS 270 (643)
Q Consensus 264 G~~~~~~ 270 (643)
|+.+++.
T Consensus 512 G~~~~v~ 518 (539)
T COG1123 512 GPTEKVF 518 (539)
T ss_pred CCHHHHh
Confidence 9888774
No 205
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-42 Score=355.68 Aligned_cols=221 Identities=21% Similarity=0.319 Sum_probs=189.6
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----h
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----A 112 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~ 112 (643)
.+.+.++++.++|+++.+|+|+|+++++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.. .
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3456778888999998999999999999999999999999999999999999986 69999999988632 2
Q ss_pred hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 113 QFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 113 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
.+++.++|++|++.++ .+|+.||+.+....+. . .++.+++++++++.+++.+...... +..++.||||||||++||
T Consensus 86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR-Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred hhhhceEEEecCCccc-cccHHHHHHHHHhhcC-c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHH
Confidence 4567799999999887 4899999998765432 1 2334567899999999865332222 457789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe--------CCeEEEec
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA--------NGSVLHHG 264 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--------~G~iv~~G 264 (643)
|||+++|++|+|||||+|||+.++.++.+.|++++ + ++|||++||+++ ++.+++|++++|+ +|++++.|
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeC
Confidence 99999999999999999999999999999999995 3 789999999997 5889999999996 89999999
Q ss_pred ChhHHH
Q 006505 265 TVDLLS 270 (643)
Q Consensus 265 ~~~~~~ 270 (643)
+++++.
T Consensus 239 ~~~~~~ 244 (261)
T PRK14263 239 PTAQIF 244 (261)
T ss_pred CHHHHH
Confidence 988764
No 206
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.7e-43 Score=391.68 Aligned_cols=214 Identities=26% Similarity=0.415 Sum_probs=191.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhh-cccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQF-RKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~-~~~i~ 119 (643)
++++++|++++|+++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ... ++.++
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 10 PLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred ceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 35789999999998899999999999999999999999999999999999999999999999988743 222 34699
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|++|++.+++.+||+||+.+... ..++.+++++++++.+|+.+.. ++++.+|||||||||+||++|+.+|
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~-----~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLP-----KRQASMQKMKQLLAALGCQLDL-----DSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccc-----cchHHHHHHHHHHHHcCCCccc-----cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999987532 1233456788999999998766 4467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ .+.++||++++|++|++++.|++++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence 999999999999999999999999999875 999999999997 48899999999999999999998775
No 207
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.3e-42 Score=350.56 Aligned_cols=212 Identities=27% Similarity=0.433 Sum_probs=181.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++++++++|+++++++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.++|
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 35778999999988899999999999999999999999999999999999999999999999987642 345678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++|++.+++. |++||+.+....+. .. ..+++++++++.+|+. ... +.+++.||||||||++||++|+.+|
T Consensus 86 ~~q~~~l~~~-tv~enl~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~-----~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 86 CAQTPTLFGD-TVYDNLIFPWQIRN-QQ--PDPAIFLDDLERFALPDTIL-----TKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred Eecccccccc-cHHHHHHhHHhhcC-CC--hHHHHHHHHHHHcCCChHHh-----cCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999988875 99999988654331 11 1235678999999995 344 4467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe-CCeEEEecCh
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA-NGSVLHHGTV 266 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~~ 266 (643)
++++|||||+|||+.++..+.+.|++++++.|.|||++||+++ ++ +.+|++++|+ ++..+.+|..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhhh
Confidence 9999999999999999999999999998766899999999997 35 5799999995 5555566653
No 208
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=335.22 Aligned_cols=220 Identities=28% Similarity=0.438 Sum_probs=201.6
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++++++|+|+++.+|+|+|.++++|.+++|+|||||||||||.+++.+.++++|+|+++|.++.. +.+.+.++..
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999999999854 5677888999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRL-RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
-|+......+||+|-+.|+..... +...++.++.+++.++.++|++..|+ +..+||||||||.-||..++++.+
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dr-----yLd~LSGGQrQRAfIAMVlaQdTd 155 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDR-----YLDELSGGQRQRAFIAMVLAQDTD 155 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHH-----hHHhcccchhhhhhhheeeeccCc
Confidence 999999899999999999743321 23556778899999999999998855 667999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
.++||||.++||...+.++|+.|++++++.|+||+++.||.+. +..++|+|+-|++|+++..|+++++.
T Consensus 156 yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 156 YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHhc
Confidence 9999999999999999999999999999999999999999996 77899999999999999999999875
No 209
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-42 Score=357.68 Aligned_cols=217 Identities=24% Similarity=0.399 Sum_probs=182.4
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEcc
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q 123 (643)
.+++++++++|+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.....++.++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 467899999995 5789999999999999999999999999999999999999999999999988743222346999999
Q ss_pred CCCCC--CCCCHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 124 RDTLF--PLLTVEETLMFSAKLRL---RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 124 ~~~l~--~~lTv~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
++.+. ...+++|++.++..... ....+..+++++++++.+|+.+..+ +.+..||||||||++||+||+.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgG~~qrv~laraL~~~ 160 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----RQIGELSGGQKKRVFLARAIAQQ 160 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----CCcccCCHHHHHHHHHHHHHhcC
Confidence 97652 23478998865421100 1122334456788999999987664 46679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|+++++ +|++++.|+++++
T Consensus 161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 161 GQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999864 899999999997 588999999877 8999999998775
No 210
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-42 Score=354.57 Aligned_cols=219 Identities=21% Similarity=0.338 Sum_probs=186.6
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCC-----chhh
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPID-----KAQF 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~-----~~~~ 114 (643)
++++++++++|+.+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++. ...+
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence 5788999999988899999999999999999999999999999999999976 37999999998763 1345
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 115 RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 115 ~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
++.++|++|++.+++. |+.||+.+....+. .. .+.+++++++++.+++.+..+.. .++.+.+||||||||++||+|
T Consensus 90 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~lara 165 (264)
T PRK14243 90 RRRIGMVFQKPNPFPK-SIYDNIAYGARING-YK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSGGQQQRLCIARA 165 (264)
T ss_pred hhhEEEEccCCccccc-cHHHHHHhhhhhcC-cc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCHHHHHHHHHHHH
Confidence 6789999999988884 99999988654321 11 23345677788888875322111 155778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe---------CCeEEEecC
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA---------NGSVLHHGT 265 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~---------~G~iv~~G~ 265 (643)
|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|+ +|++++.|+
T Consensus 166 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 166 IAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 9999999999999999999999999999999975 589999999997 5899999999998 799999999
Q ss_pred hhHHH
Q 006505 266 VDLLS 270 (643)
Q Consensus 266 ~~~~~ 270 (643)
++++.
T Consensus 243 ~~~~~ 247 (264)
T PRK14243 243 TEKIF 247 (264)
T ss_pred HHHHH
Confidence 98874
No 211
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.6e-42 Score=352.26 Aligned_cols=212 Identities=30% Similarity=0.536 Sum_probs=173.4
Q ss_pred hccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 47 KLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++++++|+ .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|+
T Consensus 2 ~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (237)
T cd03252 2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVV 81 (237)
T ss_pred EEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEE
Confidence 4678888885 3679999999999999999999999999999999999999999999999987642 3456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH-----HHHHHHHHHc--CChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLR-----ARVKSLVKEL--GLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+|++.+++ .||+||+.+... ....+... ....++++.+ +++... +..+.+|||||||||+||++
T Consensus 82 ~q~~~~~~-~tv~~nl~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~LSgG~~qrv~lara 152 (237)
T cd03252 82 LQENVLFN-RSIRDNIALADP---GMSMERVIEAAKLAGAHDFISELPEGYDTIV-----GEQGAGLSGGQRQRIAIARA 152 (237)
T ss_pred cCCchhcc-chHHHHhhccCC---CCCHHHHHHHHHHcCcHHHHHhCcccccchh-----hcCCCcCCHHHHHHHHHHHH
Confidence 99988776 699999987431 11111111 1122334433 333222 34678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++ +.+|++++|++|++++.|+++++.+
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 153 LIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999996 3 899999999997 35 5699999999999999999887643
No 212
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-42 Score=394.98 Aligned_cols=225 Identities=25% Similarity=0.345 Sum_probs=193.2
Q ss_pred hhhhhccccccccc----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC--------
Q 006505 43 EELSKLEEAADSDG----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID-------- 110 (643)
Q Consensus 43 ~~~~~~~~~~~~~~----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~-------- 110 (643)
.++++++++++.|+ .+++|+||||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 45788999999996 357999999999999999999999999999999999999999999999986331
Q ss_pred -----ch---hhc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCC
Q 006505 111 -----KA---QFR-KVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVR 179 (643)
Q Consensus 111 -----~~---~~~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~ 179 (643)
.. .++ +.+|||+|++ .+++.+||.||+.++.+.....+.++.++++.++++.+||.+..+ ..++++.
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~~~ 167 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQT--ILSRYPH 167 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhh--HHhCCCc
Confidence 11 222 4799999997 688999999999998764323345566678999999999953110 1155788
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 180 GISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 180 ~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|++++++.|+|||++|||++ .+.++||+|++|++|+
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~G~ 246 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQGE 246 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeCCe
Confidence 999999999999999999999999999999999999999999999998766999999999997 5889999999999999
Q ss_pred EEEecChhHHH
Q 006505 260 VLHHGTVDLLS 270 (643)
Q Consensus 260 iv~~G~~~~~~ 270 (643)
+++.|+++++.
T Consensus 247 i~~~g~~~~~~ 257 (623)
T PRK10261 247 AVETGSVEQIF 257 (623)
T ss_pred ecccCCHHHhh
Confidence 99999988764
No 213
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-42 Score=385.93 Aligned_cols=215 Identities=24% Similarity=0.348 Sum_probs=188.2
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEEEcc
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGYVTQ 123 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q 123 (643)
++|++++|+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|++|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 3678889988899999999999999999999999999999999999999999999999998742 234567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLR--LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~--~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
++.+++.+||+||+.+....... ...++..++++++++.+|+.+.. ++.+.+|||||||||+||++|+.+|++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGq~qrv~lA~al~~~p~l 155 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP-----RAKVATLSVSQMQMIEIAKAFSYNAKI 155 (491)
T ss_pred ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCc-----cCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99899999999999875421111 13344456789999999998665 446789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|+++..|++++.
T Consensus 156 llLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 156 VIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999864 999999999997 58889999999999999999998764
No 214
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-42 Score=341.65 Aligned_cols=199 Identities=29% Similarity=0.382 Sum_probs=175.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q 123 (643)
+++++++++|+.+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 467889999988899999999999999999999999999999999999999999999999988743 345678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
++.+++.+|+.||+.+....+. . ..+++++++++.+|+.+..+ ..+..||||||||++||+||+++|++++
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~-~---~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~lll 152 (204)
T PRK13538 82 QPGIKTELTALENLRFYQRLHG-P---GDDEALWEALAQVGLAGFED-----VPVRQLSAGQQRRVALARLWLTRAPLWI 152 (204)
T ss_pred ccccCcCCcHHHHHHHHHHhcC-c---cHHHHHHHHHHHcCCHHHhh-----CChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998764431 1 23457889999999987664 4678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+..+|++++
T Consensus 153 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 153 LDEPFTAIDKQGVARLEALLAQHAEQ-GGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEecChh-hhccCCceEEec
Confidence 99999999999999999999999764 899999999997 476766788776
No 215
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-42 Score=349.92 Aligned_cols=220 Identities=23% Similarity=0.413 Sum_probs=187.9
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hhhc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQFR 115 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~~~ 115 (643)
+.++++++.|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++.. ...+
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELR 83 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHh
Confidence 457888889988889999999999999999999999999999999999864 379999999988642 2456
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.++|++|++.+++. |++||+.+..........+..++++.++++.+|+.+...... +..+..||||||||++||++|
T Consensus 84 ~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 84 KKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHH
Confidence 789999999988885 999999876543211233445677889999999854322222 557889999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|++|++++.|+++++.
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999953 789999999997 588999999999999999999988763
No 216
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.2e-42 Score=344.14 Aligned_cols=203 Identities=23% Similarity=0.302 Sum_probs=179.9
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEcc
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q 123 (643)
+++.+++++++|+++++++++|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.....++.++|++|
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q 89 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeec
Confidence 46789999999988899999999999999999999999999999999999999999999999998754344567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
++.+++.+|++||+.+....+. . ...+.++++++.+++.+.. +..+..||||||||++||++++.+|++++
T Consensus 90 ~~~~~~~~t~~e~l~~~~~~~~-~---~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~lll 160 (214)
T PRK13543 90 LPGLKADLSTLENLHFLCGLHG-R---RAKQMPGSALAIVGLAGYE-----DTLVRQLSAGQKKRLALARLWLSPAPLWL 160 (214)
T ss_pred CcccccCCcHHHHHHHHHHhcC-C---cHHHHHHHHHHHcCChhhc-----cCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999988754421 1 1234678899999998766 44668999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
|||||+|||+.++..+.+.|++++++ |.|||++|||++ ++.+++|++++++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 161 LDEPYANLDLEGITLVNRMISAHLRG-GGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999999875 899999999998 58899999999863
No 217
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=9.4e-42 Score=349.84 Aligned_cols=218 Identities=23% Similarity=0.344 Sum_probs=184.1
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcC--CCCCccEEEECCCcCCc---hhhcc-cE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK--LTPQSGSTFVNGSPIDK---AQFRK-VS 118 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~--~~~~~G~I~~~g~~~~~---~~~~~-~i 118 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.. ...++ .+
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence 56789999999888899999999999999999999999999999999998 57899999999988743 22222 47
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcC---C---CCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCC-CCCHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRL---R---LPQAQLRARVKSLVKELGLE-HVAMARVGDDRVR-GISGGERRRVS 190 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~---~---~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~-~LSGGerqRv~ 190 (643)
+|++|++.+++.+|+.|++.+...... . ....+..+++.++++.+|+. +.. ++.+. +||||||||++
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFL-----SRNVNEGFSGGEKKRNE 161 (252)
T ss_pred EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhh-----ccccccCCCHHHHHHHH
Confidence 899999999999999999987543211 0 11223346778899999996 344 33455 59999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCEEEEEeCCeEEEecChhHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM-FNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~ 269 (643)
||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++. +... +|++++|++|++++.|+++.+
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRL-LDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999999999999999986 48999999999874 6565 899999999999999998843
No 218
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=7.6e-42 Score=385.62 Aligned_cols=220 Identities=26% Similarity=0.403 Sum_probs=190.6
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEEC-------------------
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TPQSGSTFVN------------------- 105 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~~~G~I~~~------------------- 105 (643)
+++|++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.++
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~ 81 (520)
T TIGR03269 2 EVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEP 81 (520)
T ss_pred EEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccc
Confidence 4688999998889999999999999999999999999999999999997 6999999997
Q ss_pred ----CCcCC----------c---hhhcccEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh
Q 006505 106 ----GSPID----------K---AQFRKVSGYVTQR-DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167 (643)
Q Consensus 106 ----g~~~~----------~---~~~~~~i~yv~Q~-~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~ 167 (643)
|.++. . ...++.++|++|+ +.+++.+||+||+.+..... +.+.++.++++.++++.+||++
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 82 CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-GYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred cccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh
Confidence 22210 0 1245679999998 67888899999999876432 2344555678999999999987
Q ss_pred hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 168 ~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
.. ++.+++|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||++ .+.+
T Consensus 161 ~~-----~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~ 234 (520)
T TIGR03269 161 RI-----THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIED 234 (520)
T ss_pred hh-----hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHH
Confidence 66 44678999999999999999999999999999999999999999999999997766999999999997 4788
Q ss_pred hcCEEEEEeCCeEEEecChhHHHHHH
Q 006505 248 MFNSILMLANGSVLHHGTVDLLSVSL 273 (643)
Q Consensus 248 ~~D~v~~L~~G~iv~~G~~~~~~~~f 273 (643)
+||++++|++|++++.|++++..+.+
T Consensus 235 ~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 235 LSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred hcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 99999999999999999998876543
No 219
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-42 Score=362.33 Aligned_cols=221 Identities=21% Similarity=0.352 Sum_probs=189.2
Q ss_pred hhhhccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----
Q 006505 44 ELSKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK----- 111 (643)
Q Consensus 44 ~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~----- 111 (643)
.++.+++++.+|. .+.+|+|+|++|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 3678899999984 4579999999999999999999999999999999999986 569999999998852
Q ss_pred hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 112 AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLP-QAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 112 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~-~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
..+++.++||||++.+++ .|++||+.|+.... ... .+..++.+.++++.++|.+..++.+ ++.+..||||||||++
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~l~~~~-~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN-GINDRKILEKIVEKSLKSAALWDEVKDDL-DKAGNALSGGQQQRLC 235 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhc-CCChHHHHHHHHHHHHHHcCCcchhhhhh-hCCcccCCHHHHHHHH
Confidence 346778999999999886 69999999865432 122 2233455788899998854333333 4678899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+++|+|++|++|++++.|+++++.
T Consensus 236 LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 236 IARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999874 699999999997 478889999999999999999999875
No 220
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-42 Score=354.28 Aligned_cols=220 Identities=23% Similarity=0.342 Sum_probs=186.4
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~-----~~ 113 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ..
T Consensus 19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~ 98 (274)
T PRK14265 19 SVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98 (274)
T ss_pred ceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHH
Confidence 467899999999988999999999999999999999999999999999999863 58999999988632 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+++.++|++|++.+++. ||.||+.+....+. . ....++.+++.++.+++....... -+.++..|||||||||+||+
T Consensus 99 ~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~LAr 174 (274)
T PRK14265 99 LRRQVGMVFQRPNPFPK-SIYENIAFAPRANG-Y-KGNLDELVEDSLRRAAIWEEVKDK-LKEKGTALSGGQQQRLCIAR 174 (274)
T ss_pred HhhcEEEEccCCccccc-cHHHHHHhHHHhcC-c-hHHHHHHHHHHHHHcccchhhHHH-hcCCcccCCHHHHHHHHHHH
Confidence 56789999999988875 99999988654321 1 112334567788888874321111 14577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe---------CCeEEEec
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA---------NGSVLHHG 264 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~---------~G~iv~~G 264 (643)
||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|+ +|++++.|
T Consensus 175 aL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g 251 (274)
T PRK14265 175 AIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFS 251 (274)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeC
Confidence 99999999999999999999999999999999964 689999999997 5889999999997 89999999
Q ss_pred ChhHHH
Q 006505 265 TVDLLS 270 (643)
Q Consensus 265 ~~~~~~ 270 (643)
+++++.
T Consensus 252 ~~~~~~ 257 (274)
T PRK14265 252 PTEQMF 257 (274)
T ss_pred CHHHHH
Confidence 998874
No 221
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.1e-41 Score=348.70 Aligned_cols=208 Identities=29% Similarity=0.460 Sum_probs=179.5
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccC
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQR 124 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~ 124 (643)
+++++++ .+|+|+|+++++||+++|+||||||||||+++|+|+.++ +|+|.++|+++.. ...++.++|++|+
T Consensus 3 ~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 3 LNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred ccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 4566654 389999999999999999999999999999999999864 9999999998743 3345679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc-------
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH------- 197 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~------- 197 (643)
+.+++.+|++||+.+.... ....++..++++++++.+|+.+.. ++.++.||||||||++||++|+.
T Consensus 78 ~~~~~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~la~al~~~~~~~~p 150 (248)
T PRK03695 78 QTPPFAMPVFQYLTLHQPD--KTRTEAVASALNEVAEALGLDDKL-----GRSVNQLSGGEWQRVRLAAVVLQVWPDINP 150 (248)
T ss_pred CccCCCccHHHHHHhcCcc--CCCcHHHHHHHHHHHHHcCCHhHh-----cCCcccCCHHHHHHHHHHHHHhccccccCC
Confidence 8888889999999876322 122334456789999999998765 44678999999999999999998
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|+++++
T Consensus 151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 67999999999999999999999999999864 899999999997 58899999999999999999988765
No 222
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-42 Score=348.64 Aligned_cols=212 Identities=29% Similarity=0.458 Sum_probs=175.8
Q ss_pred hccccccccccc--ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 47 KLEEAADSDGVR--RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~~~--~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++++++|+++ .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|+
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (234)
T cd03251 2 EFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLV 81 (234)
T ss_pred EEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEe
Confidence 467888888765 79999999999999999999999999999999999999999999999987632 3456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHc--CChhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRA-----RVKSLVKEL--GLEHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gl~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+|++.+++ .||+||+.+.... ...++..+ .+.+.++.+ ++++.. +..+..||||||||++||++
T Consensus 82 ~q~~~~~~-~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~LS~G~~qrv~la~a 152 (234)
T cd03251 82 SQDVFLFN-DTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDTVI-----GERGVKLSGGQRQRIAIARA 152 (234)
T ss_pred CCCCeecc-ccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcceee-----ccCCCcCCHHHHHHHHHHHH
Confidence 99998887 5999999875321 11111111 234455554 444333 44678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++. .+|++++|++|+++..|+++++.+
T Consensus 153 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 153 LLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLS-TIE-NADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHh-hCCEEEEecCCeEeeeCCHHHHHH
Confidence 999999999999999999999999999999996 3 899999999997 465 499999999999999999887644
No 223
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=351.07 Aligned_cols=223 Identities=21% Similarity=0.355 Sum_probs=187.7
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCC-------
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPID------- 110 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~------- 110 (643)
...+++++++++|+++++|+|+|+++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 3457889999999888999999999999999999999999999999999999875 6999999997653
Q ss_pred chhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 111 KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 111 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
...+++.++|++|++.+++. |++||+.+..........+..++++.++++.+++.+..... -++.+..||||||||++
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDR-LGDLAFNLSGGQQQRLC 171 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHH-HhCCcccCCHHHHHHHH
Confidence 12456789999999999986 99999988654321112223346778888888874211111 14567899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++++|++|+++..|+.+++.
T Consensus 172 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 172 IARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQ-QAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999964 689999999997 588899999999999999999987764
No 224
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=6.4e-42 Score=337.66 Aligned_cols=183 Identities=53% Similarity=0.866 Sum_probs=165.7
Q ss_pred hhcccccccccc------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEECCCcCCchhhccc
Q 006505 46 SKLEEAADSDGV------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TPQSGSTFVNGSPIDKAQFRKV 117 (643)
Q Consensus 46 ~~~~~~~~~~~~------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~~~G~I~~~g~~~~~~~~~~~ 117 (643)
+++++++++|+. +++|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.....++.
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhhe
Confidence 457888888875 68999999999999999999999999999999999999 9999999999998865456778
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
++|++|++.+++.+|++||+.+.... ..||||||||++||+||+.
T Consensus 84 i~~~~q~~~~~~~~t~~~~i~~~~~~-----------------------------------~~LS~G~~qrv~laral~~ 128 (194)
T cd03213 84 IGYVPQDDILHPTLTVRETLMFAAKL-----------------------------------RGLSGGERKRVSIALELVS 128 (194)
T ss_pred EEEccCcccCCCCCcHHHHHHHHHHh-----------------------------------ccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999764311 0799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|+++.++.+++|++++|++|++++.|
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999764 9999999999964578899999999999998764
No 225
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.1e-42 Score=421.81 Aligned_cols=223 Identities=26% Similarity=0.434 Sum_probs=202.1
Q ss_pred hhhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEE
Q 006505 44 ELSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~ 119 (643)
.++++++++++|++ +.+|+|||+.|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.+|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 35778999999985 679999999999999999999999999999999999999999999999998743 34567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|+||++.+++.+||+|++.+.++++ +.++++.+++++++++.+||.+.+|+ ++++||||||||++||+||+.+|
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~-g~~~~~~~~~v~~lLe~lgL~~~~dk-----~~~~LSGGqKqRLslA~ALi~~P 2089 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLR-GVPAEEIEKVANWSIQSLGLSLYADR-----LAGTYSGGNKRKLSTAIALIGCP 2089 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHhcC-----ChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999887765 33455556788999999999887744 66799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 274 (643)
+++||||||+|||+.+++.+++.|++++++ |+|||++||+++ ++.++|||+++|++|+++..|+++++...+.
T Consensus 2090 ~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2090 PLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 999999999999999999999999999875 999999999997 6899999999999999999999999987765
No 226
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.1e-41 Score=343.43 Aligned_cols=202 Identities=25% Similarity=0.379 Sum_probs=175.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+.+++++++|+.+++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+..
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~---------~~~~~ 93 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL---------LGLGG 93 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh---------hcccc
Confidence 567899999999999999999999999999999999999999999999999999999999986531 11123
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+.+.+||+||+.+..... ....++.+++++++++.+|+++..++ .+.+||||||||++||++|+.+|++++||
T Consensus 94 ~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 94 GFNPELTGRENIYLNGRLL-GLSRKEIDEKIDEIIEFSELGDFIDL-----PVKTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred cCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4456789999998876533 22344455678899999999876644 56799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999875 899999999997 578899999999999998765
No 227
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=9.4e-42 Score=384.86 Aligned_cols=226 Identities=28% Similarity=0.445 Sum_probs=190.6
Q ss_pred hhhhhccccccccc-----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEEC-CCc---CCc--
Q 006505 43 EELSKLEEAADSDG-----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVN-GSP---IDK-- 111 (643)
Q Consensus 43 ~~~~~~~~~~~~~~-----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~-g~~---~~~-- 111 (643)
.+++++++++++|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++ |.+ +..
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 34788999999984 3579999999999999999999999999999999999999999999996 642 211
Q ss_pred ----hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 112 ----AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 112 ----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
...++.++|++|++.+++.+||.||+.+...+. .+.++.++++.++++.+|+.+.......++++.+|||||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~q 434 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE--LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERH 434 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHH
Confidence 123567999999998999999999998764332 23333456788999999996410000114577899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++|||++ .+.++||++++|++|+++..|+++
T Consensus 435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~ 513 (520)
T TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPE 513 (520)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999998766899999999997 588999999999999999999988
Q ss_pred HHHH
Q 006505 268 LLSV 271 (643)
Q Consensus 268 ~~~~ 271 (643)
++.+
T Consensus 514 ~~~~ 517 (520)
T TIGR03269 514 EIVE 517 (520)
T ss_pred HHHh
Confidence 7654
No 228
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-42 Score=315.92 Aligned_cols=216 Identities=33% Similarity=0.484 Sum_probs=196.1
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---------hhhcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---------AQFRK 116 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---------~~~~~ 116 (643)
++++|+...||..++|.|++++.++||-+.++||||||||||+|.|.=+..|.+|+..+.|...+- .++|+
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~ 82 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRR 82 (242)
T ss_pred eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999875421 35788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
.+|+|+|+..++|++||.||+.-+-.--.+.++++.+.++.++|+.+.|.+.+ |+++-.|||||+|||+|||||+
T Consensus 83 ~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~a-----dr~plhlsggqqqrvaiaralm 157 (242)
T COG4161 83 NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA-----DRYPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccc-----ccCceecccchhhhHHHHHHHh
Confidence 99999999999999999999976532223557888899999999999999888 5588899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
.+|++|++||||++|||+-..++.+++++++. .|.|-+++||..+. ..+.+.+|+.|++|++++.|+.+.
T Consensus 158 mkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev~v-a~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 158 MEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEVEV-ARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeehhH-HHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999997 59999999999974 778999999999999999998753
No 229
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.6e-42 Score=395.09 Aligned_cols=212 Identities=25% Similarity=0.403 Sum_probs=181.9
Q ss_pred hhcccccc-cccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 46 SKLEEAAD-SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 46 ~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++|++. .++++++|+|+|++++|||.+||+||||||||||+++|+|++ |++|+|.+||+++.. ..+|+.++||
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v 428 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV 428 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEe
Confidence 56788864 455678999999999999999999999999999999999999 999999999988743 5788999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+|++.+|+. |++|||.++.. ..+ +++++++++..++++. .||.+|+ ....||||||||++||||
T Consensus 429 ~Q~~~LF~~-TI~eNI~~g~~---~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge-~G~~LSGGQrQRialARA 499 (588)
T PRK11174 429 GQNPQLPHG-TLRDNVLLGNP---DAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGD-QAAGLSVGQAQRLALARA 499 (588)
T ss_pred cCCCcCCCc-CHHHHhhcCCC---CCC----HHHHHHHHHHhCHHHHHHhccccccccccc-CCCCCCHHHHHHHHHHHH
Confidence 999999997 99999988521 122 2355566666665432 3566754 467899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999999999999863 899999999995 467899999999999999999998753
No 230
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.9e-42 Score=385.75 Aligned_cols=223 Identities=26% Similarity=0.373 Sum_probs=190.0
Q ss_pred hhhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCCcCCc---h
Q 006505 45 LSKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-----QSGSTFVNGSPIDK---A 112 (643)
Q Consensus 45 ~~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-----~~G~I~~~g~~~~~---~ 112 (643)
++++++++++|+. +.+|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++.. .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 5778999999963 5799999999999999999999999999999999999986 69999999998743 1
Q ss_pred ---hhc-ccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHH
Q 006505 113 ---QFR-KVSGYVTQRDT--LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGER 186 (643)
Q Consensus 113 ---~~~-~~i~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGer 186 (643)
..+ +.+||++|++. +++.+|++|++.+........+..+..++++++++.+||.+..+. .++++.+||||||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~~~~LSgGe~ 162 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR--LTDYPHQLSGGER 162 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--HhhCCcccCHHHH
Confidence 123 57999999974 677789999988654332223445566789999999999752110 1446789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 187 RRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 187 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
|||+||+||+.+|++|+|||||+|||+.++..+.++|++++++.|+|||++|||++ .+.++||+|++|++|++++.|++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~ 241 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRA 241 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999998756899999999997 47889999999999999999998
Q ss_pred hHHH
Q 006505 267 DLLS 270 (643)
Q Consensus 267 ~~~~ 270 (643)
+++.
T Consensus 242 ~~~~ 245 (529)
T PRK15134 242 ATLF 245 (529)
T ss_pred HHHh
Confidence 8764
No 231
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.7e-42 Score=385.83 Aligned_cols=221 Identities=27% Similarity=0.408 Sum_probs=191.2
Q ss_pred hhhhhccccccccc-----------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc
Q 006505 43 EELSKLEEAADSDG-----------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK 111 (643)
Q Consensus 43 ~~~~~~~~~~~~~~-----------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~ 111 (643)
.+++++++++++|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ ++|+|+++|+++..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 34688999999985 3679999999999999999999999999999999999985 89999999987642
Q ss_pred ---h---hhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCC
Q 006505 112 ---A---QFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLR-LPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGI 181 (643)
Q Consensus 112 ---~---~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~L 181 (643)
. .+++.++|++|++ .+++.+||.||+.++...+.. .+.++.+++++++++.+|+. +.. ++++.+|
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~L 426 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETR-----HRYPAEF 426 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHH-----hcCCccC
Confidence 1 2356799999996 478889999999987543211 23344556789999999996 345 4477899
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE
Q 006505 182 SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL 261 (643)
Q Consensus 182 SGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 261 (643)
||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++.|+|||++|||++ .+.++||++++|++|+++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~ 505 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVV 505 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999998756899999999997 488899999999999999
Q ss_pred EecChhHHH
Q 006505 262 HHGTVDLLS 270 (643)
Q Consensus 262 ~~G~~~~~~ 270 (643)
..|+++++.
T Consensus 506 ~~~~~~~~~ 514 (529)
T PRK15134 506 EQGDCERVF 514 (529)
T ss_pred EEcCHHHHh
Confidence 999988764
No 232
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=5.4e-42 Score=344.46 Aligned_cols=207 Identities=31% Similarity=0.537 Sum_probs=175.5
Q ss_pred hhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 46 SKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++++++|+. +.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 347788888865 579999999999999999999999999999999999999999999999987632 335678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcC------CCcCCCCCHHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG------DDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg------~~~~~~LSGGerqRv~ia~a 194 (643)
++|++.+++ .|+.||+.+.... .. ++++.++++.+++.+..++... ...+.+||||||||++||++
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPL---AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCC---CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 999998887 5999999764211 11 2356678888999876655321 22457999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+ +++|++++|++|++++.|
T Consensus 155 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999875 489999999997 34 799999999999998754
No 233
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.6e-42 Score=396.33 Aligned_cols=215 Identities=30% Similarity=0.484 Sum_probs=185.8
Q ss_pred hhhccccccccccc--ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEE
Q 006505 45 LSKLEEAADSDGVR--RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~~--~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~ 119 (643)
-++++|++.+|+.. .+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|.+|+|++||.+++ ...+|+++|
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence 36789999999876 6999999999999999999999999999999999999999999999999874 367899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-------hhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-------VAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-------~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+||+.+|.. |++||+.++. +... .+++.+.++.-|..+ -.++.+| +...+||||||||++||
T Consensus 551 ~V~Q~~~Lf~g-SI~eNi~l~~----p~~~---~e~i~~A~~~ag~~~fI~~lP~gy~t~v~-E~G~~LSGGQrQrlalA 621 (709)
T COG2274 551 YVLQDPFLFSG-SIRENIALGN----PEAT---DEEIIEAAQLAGAHEFIENLPMGYDTPVG-EGGANLSGGQRQRLALA 621 (709)
T ss_pred EEcccchhhcC-cHHHHHhcCC----CCCC---HHHHHHHHHHhCcHHHHHhcccccccccc-cCCCCCCHHHHHHHHHH
Confidence 99999999998 9999998753 2111 223444444444432 2345553 56779999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
|||+++|+||+||||||+||+.+.+.+.+.|.++.+ |+|+|+++|.++ ..+.||+|++|++|+++.+|+.+|+.+.
T Consensus 622 RaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 622 RALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999999999974 899999999986 5799999999999999999999998754
No 234
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-42 Score=384.04 Aligned_cols=215 Identities=23% Similarity=0.382 Sum_probs=189.0
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..+++.++|
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 83 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI 83 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE
Confidence 5778999999988899999999999999999999999999999999999999999999999988742 234678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLR-LR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~-~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
++|++.+++.+||+||+.++.... .. ...++.+++++++++.+|+.+.. ++.+.+|||||||||+||++|+.+
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-----DTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred EEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-----CCchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999864211 11 13445566789999999997655 446789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|+++..++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999864 999999999997 58899999999999999877653
No 235
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-42 Score=373.59 Aligned_cols=212 Identities=29% Similarity=0.448 Sum_probs=186.5
Q ss_pred hccccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEEEEc
Q 006505 47 KLEEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~yv~ 122 (643)
++++++..|++. ++++|+|+++++|+.+||+|+||||||||+++|+|+.+|++|+|.+||.+.. ...++++++||+
T Consensus 322 ~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~ 401 (559)
T COG4988 322 SLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVS 401 (559)
T ss_pred eecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeC
Confidence 356888888765 8999999999999999999999999999999999999999999999998774 467999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh------hhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA------MARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~------~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
|++.+|+. |++||+.++.. ..+ ++.+.+++++.|+.+.. |+.+| +..++|||||+|||++||||+
T Consensus 402 Q~p~lf~g-TireNi~l~~~---~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ig-e~G~~LSgGQ~QRlaLARAll 472 (559)
T COG4988 402 QNPYLFAG-TIRENILLARP---DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIG-EGGAGLSGGQAQRLALARALL 472 (559)
T ss_pred CCCccccc-cHHHHhhccCC---cCC----HHHHHHHHHHhcHHHhhcCCCcccchhc-cCCCCCCHHHHHHHHHHHHhc
Confidence 99999998 99999987531 112 45677788887776544 44453 467889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
++++++++||||++||.++...+.+.|.++++ ++|+|++||++. ...-+|+|++|++|++++.|.++++.+
T Consensus 473 ~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 473 SPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLE--DAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred CCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChH--HHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999999999999986 699999999985 467899999999999999999999853
No 236
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-41 Score=337.83 Aligned_cols=190 Identities=35% Similarity=0.545 Sum_probs=164.3
Q ss_pred hhccccccccc----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCCcCCc--hhhcc
Q 006505 46 SKLEEAADSDG----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT---PQSGSTFVNGSPIDK--AQFRK 116 (643)
Q Consensus 46 ~~~~~~~~~~~----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~---~~~G~I~~~g~~~~~--~~~~~ 116 (643)
..++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 83 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPG 83 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcc
Confidence 45677777774 5689999999999999999999999999999999999999 889999999998753 34567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
.++|++|++.+++.+||+||+.++.... .++.+..||||||||++||+||+
T Consensus 84 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 84 EIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred eEEEEecccccCCCCcHHHHHhhhhhhc-----------------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 8999999999999999999998754210 14466799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
.+|++++|||||+|||+.++..+.+.|++++++.+.|+|+++|+...++.+.+|++++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999987556777776655433688999999999999998765
No 237
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.3e-42 Score=383.61 Aligned_cols=218 Identities=24% Similarity=0.434 Sum_probs=189.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCCcCCch----hhcccEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP--QSGSTFVNGSPIDKA----QFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~--~~G~I~~~g~~~~~~----~~~~~i~ 119 (643)
++++|++++|+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++... ..++.++
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 4678999999888999999999999999999999999999999999999987 799999999887431 2346799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcC-C--CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRL-R--LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~-~--~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
||+|++.+++.+||+||+.+...... . ...++.+++++++++.+|+.+..+ ++++++|||||||||+||++|+
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV----TRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcc----cCchhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999988654321 1 123445567899999999975431 2357899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|+++..|++++.
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999864 999999999997 58889999999999999999987653
No 238
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-41 Score=335.40 Aligned_cols=182 Identities=41% Similarity=0.709 Sum_probs=163.1
Q ss_pred hhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEECCCcCCchhhcccEE
Q 006505 46 SKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TPQSGSTFVNGSPIDKAQFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~~~G~I~~~g~~~~~~~~~~~i~ 119 (643)
++++++++.|+. +++|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ...++.++
T Consensus 4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~ 82 (192)
T cd03232 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTG 82 (192)
T ss_pred EEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceE
Confidence 467888888864 67999999999999999999999999999999999986 478999999999875 45567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|++|++.+++.+|++||+.+...++ .||||||||++||+||+.+|
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------------------~LSgGe~qrv~la~al~~~p 127 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSALLR-----------------------------------GLSVEQRKRLTIGVELAAKP 127 (192)
T ss_pred EecccCccccCCcHHHHHHHHHHHh-----------------------------------cCCHHHhHHHHHHHHHhcCC
Confidence 9999999999999999998643100 79999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-CeEEEec
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-GSVLHHG 264 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G 264 (643)
++++|||||+|||+.++..+.+.|++++++ |+|||++||+++.++.+.+|++++|++ |++++.|
T Consensus 128 ~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cEEEEeCCCcCCCHHHHHHHHHHHHHHHHc-CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999864 899999999997446789999999999 9999865
No 239
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-42 Score=345.49 Aligned_cols=213 Identities=33% Similarity=0.479 Sum_probs=176.4
Q ss_pred hhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 46 SKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 46 ~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++|++++|+. +.+++|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|.++.. ..+++.++|+
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 357888888874 579999999999999999999999999999999999999999999999987642 3456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhh------cCCCcCCCCCHHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR------VGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~------vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+|++.+++. |++||+.+.... .. .+++.+.++.+++.+..++. ..+..+..|||||||||+||++|
T Consensus 83 ~q~~~~~~~-tv~~~~~~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al 154 (229)
T cd03254 83 LQDTFLFSG-TIMENIRLGRPN---AT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAM 154 (229)
T ss_pred cCCchhhhh-HHHHHHhccCCC---CC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHH
Confidence 999988886 999999875321 11 12344455555554433221 01345789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.+|++++|||||+|||+.++..+++.|++++ + |+|||++||+++ ++ +.+|++++|++|++++.|+.++..
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 155 LRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999985 3 899999999997 35 569999999999999999877654
No 240
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=7.9e-42 Score=347.44 Aligned_cols=214 Identities=29% Similarity=0.456 Sum_probs=173.9
Q ss_pred hcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 47 KLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 47 ~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (238)
T cd03249 2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGL 81 (238)
T ss_pred eEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEE
Confidence 36778888853 469999999999999999999999999999999999999999999999987632 344567999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhh------cCCCcCCCCCHHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR------VGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~------vg~~~~~~LSGGerqRv~ia~a 194 (643)
++|++.+++ .||+||+.+....+ ..+ ...+.++..++.+..+.. ..+..+..|||||||||+||++
T Consensus 82 ~~q~~~~~~-~tv~e~l~~~~~~~---~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~a 153 (238)
T cd03249 82 VSQEPVLFD-GTIAENIRYGKPDA---TDE----EVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARA 153 (238)
T ss_pred ECCchhhhh-hhHHHHhhccCCCC---CHH----HHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHH
Confidence 999988887 59999998753211 111 122333444443322111 0144678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++ +.||++++|++|++++.|+.+++.+.
T Consensus 154 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-g~~vi~~sh~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 154 LLRNPKILLLDEATSALDAESEKLVQEALDRAM-K-GRTTIVIAHRLS-TI-RNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHH-HH-hhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 999999999999999999999999999999986 4 899999999997 45 48999999999999999998776543
No 241
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.5e-41 Score=344.75 Aligned_cols=225 Identities=23% Similarity=0.330 Sum_probs=183.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEECCCcCCc---hh-hcccEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TPQSGSTFVNGSPIDK---AQ-FRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~~~G~I~~~g~~~~~---~~-~~~~i~ 119 (643)
++++|++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.. .. .++.++
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIF 81 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceE
Confidence 45789999998889999999999999999999999999999999999995 6899999999987743 12 235699
Q ss_pred EEccCCCCCCCCCHHHHHHHHHH-hc-CCC----CHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCC-CCCHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAK-LR-LRL----PQAQLRARVKSLVKELGLE-HVAMARVGDDRVR-GISGGERRRVSI 191 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~-~~-~~~----~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~-~LSGGerqRv~i 191 (643)
|++|++.+++.+|+.+++.+... .+ ... ...+..++++++++.+++. +..+ ..+. .||||||||++|
T Consensus 82 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 82 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLT-----RSVNVGFSGGEKKRNDI 156 (248)
T ss_pred EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcc-----cCCCCCCCHHHHHHHHH
Confidence 99999988888888777654321 11 000 1123356678899999985 3332 2343 799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM-FNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||++. +... +|++++|++|++++.|+++.+
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~- 233 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVKSGDFTLV- 233 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-HHhhhCCEEEEEECCeEEEeCCHHHH-
Confidence 9999999999999999999999999999999999976 48999999999873 6665 899999999999999998854
Q ss_pred HHHHHcCC
Q 006505 271 VSLRMMGL 278 (643)
Q Consensus 271 ~~f~~~g~ 278 (643)
+.++..++
T Consensus 234 ~~~~~~~~ 241 (248)
T PRK09580 234 KQLEEQGY 241 (248)
T ss_pred HHHHhcCC
Confidence 33343333
No 242
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=355.62 Aligned_cols=222 Identities=26% Similarity=0.405 Sum_probs=187.7
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCCcCCc-----hh
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-----PQSGSTFVNGSPIDK-----AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-----~~~G~I~~~g~~~~~-----~~ 113 (643)
.++.++|++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..
T Consensus 44 ~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 44 AKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred ceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 46789999999988899999999999999999999999999999999999986 589999999987642 24
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcC-----------CC-CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCC
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRL-----------RL-PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGI 181 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~-----------~~-~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~L 181 (643)
.++.++|++|++.+++. ||+||+.+...... .. ..+..++++.++++.+++.+...... +..+++|
T Consensus 124 ~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~L 201 (305)
T PRK14264 124 LRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DDNALGL 201 (305)
T ss_pred HhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cCccccC
Confidence 56789999999988885 99999998654211 01 12233567889999998853222222 5578899
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEE-EEEeCCeE
Q 006505 182 SGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSI-LMLANGSV 260 (643)
Q Consensus 182 SGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v-~~L~~G~i 260 (643)
|||||||++||+||+++|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++ ++|++|++
T Consensus 202 SgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~-~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQ-QAARISDQTAVFLTGGEL 278 (305)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-HHHHhcCEEEEEecCCEE
Confidence 99999999999999999999999999999999999999999999975 489999999997 478899997 57899999
Q ss_pred EEecChhHHH
Q 006505 261 LHHGTVDLLS 270 (643)
Q Consensus 261 v~~G~~~~~~ 270 (643)
++.|+++++.
T Consensus 279 ~~~g~~~~~~ 288 (305)
T PRK14264 279 VEYDDTDKIF 288 (305)
T ss_pred EEeCCHHHHH
Confidence 9999987764
No 243
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-40 Score=386.06 Aligned_cols=215 Identities=31% Similarity=0.496 Sum_probs=184.0
Q ss_pred hhhhccccccccccc---ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhccc
Q 006505 44 ELSKLEEAADSDGVR---RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKV 117 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~---~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~ 117 (643)
..++.+|+..+|..+ .||+|+|+.|++|+.+||+|||||||||++++|.+++.|++|+|++||.++.. +.+|.+
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 356788998888776 59999999999999999999999999999999999999999999999999854 567899
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-------CChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL-------GLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-------gl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
+|.|.|+|.+|.. |++||+.|+.. ..+.+ ++++..+.. .|.+-.+|.+|++.+ +||||||||++
T Consensus 429 iglV~QePvlF~~-tI~eNI~~G~~---dat~~----~i~~a~k~ana~~fi~~lp~g~~T~vge~g~-qLSGGQKQRIA 499 (1228)
T KOG0055|consen 429 IGLVSQEPVLFAT-TIRENIRYGKP---DATRE----EIEEAAKAANAHDFILKLPDGYDTLVGERGV-QLSGGQKQRIA 499 (1228)
T ss_pred cCeeeechhhhcc-cHHHHHhcCCC---cccHH----HHHHHHHHccHHHHHHhhHHhhcccccCCCC-CCChHHHHHHH
Confidence 9999999998885 99999988631 11222 233333332 244556788876655 49999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||||+.+|+|||||||||+||+.+...+.+.|.+.++ |+|.|+++|+++. + +.+|+|++|++|++++.|+++|+.
T Consensus 500 IARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRLSt-I-rnaD~I~v~~~G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 500 IARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRLST-I-RNADKIAVMEEGKIVEQGTHDELI 575 (1228)
T ss_pred HHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeehhh-h-hccCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999998864 8999999999973 5 559999999999999999999987
Q ss_pred H
Q 006505 271 V 271 (643)
Q Consensus 271 ~ 271 (643)
+
T Consensus 576 ~ 576 (1228)
T KOG0055|consen 576 A 576 (1228)
T ss_pred h
Confidence 5
No 244
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.4e-41 Score=337.10 Aligned_cols=195 Identities=27% Similarity=0.393 Sum_probs=173.7
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEccC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQR 124 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~ 124 (643)
++++++++|+++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++|+
T Consensus 2 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (201)
T cd03231 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHA 81 (201)
T ss_pred EEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccc
Confidence 46788899988899999999999999999999999999999999999999999999999988642 3456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.+++.+|++||+.+..... ..++++++++.+|+.+..+ ..+..||||||||++||++|+.+|++++|
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~-------~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~llll 149 (201)
T cd03231 82 PGIKTTLSVLENLRFWHADH-------SDEQVEEALARVGLNGFED-----RPVAQLSAGQQRRVALARLLLSGRPLWIL 149 (201)
T ss_pred cccCCCcCHHHHHHhhcccc-------cHHHHHHHHHHcCChhhhc-----CchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999998753211 2456789999999987664 46789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
||||+|||+.++..+.+.|++++++ |.|+|++||++. +..+.+|+++++
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 150 DEPTTALDKAGVARFAEAMAGHCAR-GGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999998764 899999999987 578899999887
No 245
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.1e-41 Score=346.97 Aligned_cols=203 Identities=31% Similarity=0.491 Sum_probs=177.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccC
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR 124 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~ 124 (643)
++++++++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++| +..++|++|+
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~--------~~~i~~v~q~ 75 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG--------KLRIGYVPQK 75 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC--------ccCEEEeccc
Confidence 56789999999888999999999999999999999999999999999999999999999987 2359999999
Q ss_pred CCCCCC--CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 125 DTLFPL--LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 125 ~~l~~~--lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
+.+++. .|+.+++.+.. .. ..+++.++++.+|+.+..++ ++..||||||||++||++|+.+|+++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~----~~----~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~laral~~~p~ll 142 (251)
T PRK09544 76 LYLDTTLPLTVNRFLRLRP----GT----KKEDILPALKRVQAGHLIDA-----PMQKLSGGETQRVLLARALLNRPQLL 142 (251)
T ss_pred cccccccChhHHHHHhccc----cc----cHHHHHHHHHHcCChHHHhC-----ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 887775 47888765321 11 13457889999999877644 67899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.+|++++|+ |+++..|+++++.
T Consensus 143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 9999999999999999999999998755899999999997 5889999999996 4799999988763
No 246
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-41 Score=328.17 Aligned_cols=170 Identities=35% Similarity=0.645 Sum_probs=156.9
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEccC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQR 124 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~ 124 (643)
++++++++|+.+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++|+
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (173)
T cd03230 2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEE 81 (173)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecC
Confidence 36788888887789999999999999999999999999999999999999999999999988743 3456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.+++.+|+.||+. ||||||||++||++|+.+|++++|
T Consensus 82 ~~~~~~~tv~~~~~------------------------------------------LS~G~~qrv~laral~~~p~illl 119 (173)
T cd03230 82 PSLYENLTVRENLK------------------------------------------LSGGMKQRLALAQALLHDPELLIL 119 (173)
T ss_pred CccccCCcHHHHhh------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999899999873 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++.+++|++++|++|++
T Consensus 120 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 120 DEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999875 899999999997 57789999999999974
No 247
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-41 Score=381.21 Aligned_cols=219 Identities=21% Similarity=0.371 Sum_probs=188.0
Q ss_pred hhhhccccccccc---ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCC-CCccEEEECCCcCCc----hhhc
Q 006505 44 ELSKLEEAADSDG---VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLT-PQSGSTFVNGSPIDK----AQFR 115 (643)
Q Consensus 44 ~~~~~~~~~~~~~---~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-~~~G~I~~~g~~~~~----~~~~ 115 (643)
+++++++++++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ...+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 4678999999883 4679999999999999999999999999999999999998 599999999987642 2245
Q ss_pred ccEEEEccCC---CCCCCCCHHHHHHHHHH--hcC-C-CCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHH
Q 006505 116 KVSGYVTQRD---TLFPLLTVEETLMFSAK--LRL-R-LPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 116 ~~i~yv~Q~~---~l~~~lTv~E~l~~~~~--~~~-~-~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerq 187 (643)
+.++|++|++ .+++.+||.||+.+... ... . ...++.+++++++++.+++. +.. ++++++|||||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~kq 412 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASP-----ELAIARLSGGNQQ 412 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCc-----ccccccCCHHHHH
Confidence 6799999995 47888999999987532 111 1 12334456789999999996 445 4467899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||+||++|+.+|++|||||||+|||+.++..+.++|++++++ |+|||++|||++ ++.++||++++|++|+++..|+++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINH 490 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999999999875 999999999997 588999999999999999999876
Q ss_pred HH
Q 006505 268 LL 269 (643)
Q Consensus 268 ~~ 269 (643)
++
T Consensus 491 ~~ 492 (506)
T PRK13549 491 NL 492 (506)
T ss_pred cC
Confidence 64
No 248
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=9.7e-42 Score=389.98 Aligned_cols=215 Identities=23% Similarity=0.354 Sum_probs=185.9
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|++ +++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||++++. ..+++.++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 3678899988864 679999999999999999999999999999999999999999999999998753 56788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||||++.+|+. |++|||.++.. + +..+++++++++..|+.+. .|+.+|+ ....||||||||++||
T Consensus 421 ~v~Q~~~lf~~-Ti~~Ni~~~~~---~---~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~-~g~~LSGGqrQRi~LA 492 (582)
T PRK11176 421 LVSQNVHLFND-TIANNIAYART---E---QYSREQIEEAARMAYAMDFINKMDNGLDTVIGE-NGVLLSGGQRQRIAIA 492 (582)
T ss_pred EEccCceeecc-hHHHHHhcCCC---C---CCCHHHHHHHHHHhCcHHHHHhcccccCceeCC-CCCcCCHHHHHHHHHH
Confidence 99999999986 99999986421 1 1123456677777776543 3666764 4578999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|++++||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+++++.+
T Consensus 493 Rall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 493 RALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999853 799999999985 568899999999999999999988753
No 249
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.9e-41 Score=394.37 Aligned_cols=211 Identities=30% Similarity=0.431 Sum_probs=184.6
Q ss_pred hhhccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|+ ++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|++||+++.. ..+|+.+|
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 367899999984 4679999999999999999999999999999999999999999999999998753 57899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+||+.+|+. |++|||.++.. .+ ++++.++++..|+.+.. ||.+|+ ....||||||||++||
T Consensus 531 ~v~Q~~~lf~g-TI~eNi~~~~~----~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialA 600 (686)
T TIGR03797 531 VVLQNGRLMSG-SIFENIAGGAP----LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIA 600 (686)
T ss_pred EEccCCccCcc-cHHHHHhcCCC----CC----HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHH
Confidence 99999999987 99999987521 12 34567778888876543 555653 4578999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|++|+||||||+||+.+..++.+.|+++ ++|+|++||+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999875 579999999985 457799999999999999999998753
No 250
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-41 Score=335.93 Aligned_cols=198 Identities=28% Similarity=0.440 Sum_probs=172.6
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.....++.++|++|++
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRN 82 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCC
Confidence 56789999998888999999999999999999999999999999999999999999999998764323677899999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++.+||+||+.+....+. .. .+++.++++.+|+.+.. +.+++.||||||||++||++|+.+|++++||
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~-~~----~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrl~la~al~~~p~llllD 152 (207)
T PRK13539 83 AMKPALTVAENLEFWAAFLG-GE----ELDIAAALEAVGLAPLA-----HLPFGYLSAGQKRRVALARLLVSNRPIWILD 152 (207)
T ss_pred cCCCCCcHHHHHHHHHHhcC-Cc----HHHHHHHHHHcCCHHHH-----cCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 88888999999987654321 11 23578999999998755 4466799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+ |+++.+..
T Consensus 153 EPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 153 EPTAALDAAAVALFAELIRAHLAQ-GGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCch-hhcc--CcEEeecC
Confidence 999999999999999999999775 999999999997 3554 98887743
No 251
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3e-41 Score=386.64 Aligned_cols=211 Identities=22% Similarity=0.370 Sum_probs=186.1
Q ss_pred hhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEEEE
Q 006505 46 SKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSGYV 121 (643)
Q Consensus 46 ~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~yv 121 (643)
+++++++.+|++ +++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|.+||.+++ ...++++++||
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 668888888854 67999999999999999999999999999999999999999999999999874 35788999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
||++.+|++ |++|||.++. +.+ +++++++++.+|+.+.. |+.+|+ ....||||||||++||||
T Consensus 421 ~Q~~~lF~~-Ti~~NI~~~~----~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARa 490 (592)
T PRK10790 421 QQDPVVLAD-TFLANVTLGR----DIS----EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARV 490 (592)
T ss_pred ccCCccccc-hHHHHHHhCC----CCC----HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHH
Confidence 999999998 9999998852 112 34577888888876543 455543 557899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+++|++++||||||+||+.+..++.+.|+++++ ++|+|++||+++ ..+.+|+|++|++|+++..|+++++.
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999864 699999999985 46789999999999999999999885
No 252
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-41 Score=328.58 Aligned_cols=172 Identities=36% Similarity=0.611 Sum_probs=157.3
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhcccEEEE
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~yv 121 (643)
++++++++|+++++++|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.++|+
T Consensus 2 ~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (178)
T cd03229 2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMV 81 (178)
T ss_pred EEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEE
Confidence 46788888888889999999999999999999999999999999999999999999999987642 3456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+|++.+++.+|++||+.+. ||||||||++||++|+.+|++
T Consensus 82 ~q~~~~~~~~t~~~~l~~~----------------------------------------lS~G~~qr~~la~al~~~p~l 121 (178)
T cd03229 82 FQDFALFPHLTVLENIALG----------------------------------------LSGGQQQRVALARALAMDPDV 121 (178)
T ss_pred ecCCccCCCCCHHHheeec----------------------------------------CCHHHHHHHHHHHHHHCCCCE
Confidence 9999999889999987532 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
++|||||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.+++|++++|++|+
T Consensus 122 lilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999998754799999999997 4777999999999885
No 253
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-42 Score=339.83 Aligned_cols=196 Identities=30% Similarity=0.511 Sum_probs=178.9
Q ss_pred ceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hhhcccEEEEccCCCCCCCCCHHH
Q 006505 63 GVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 63 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
++++..+.-.++||-|+||||||||+|+|+|+.+|++|.|.+||+-+.. ...++++|||+||-.|||++||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 6888888867999999999999999999999999999999999986522 245788999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTS 215 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 215 (643)
||.|+.... .....+++.+.||++|.. +++|..|||||||||+|+|||++.|++|++|||.+.||-..
T Consensus 96 NL~YG~~~~-------~~~~fd~iv~lLGI~hLL-----~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 96 NLRYGMWKS-------MRAQFDQLVALLGIEHLL-----DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred chhhhhccc-------chHhHHHHHHHhCcHHHH-----hhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 999986421 345678899999999998 45889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 216 ALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 216 ~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+.+++-.|++++++.+..|+.+||.++ |+.+++|+|++|++|++...|+.+++..
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999999999999997 7999999999999999999999998753
No 254
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-41 Score=341.12 Aligned_cols=212 Identities=30% Similarity=0.450 Sum_probs=173.6
Q ss_pred hccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEc
Q 006505 47 KLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~ 122 (643)
++++++++|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++
T Consensus 2 ~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 81 (236)
T cd03253 2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVP 81 (236)
T ss_pred EEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEEC
Confidence 3677888885 5679999999999999999999999999999999999999999999999987642 34567799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhh------cCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR------VGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~------vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
|++.+++ .|++||+.+... . .+.+ .+.+.++..++.+..+.. .-++.++.||||||||++||++|+
T Consensus 82 q~~~~~~-~tv~~nl~~~~~-~--~~~~----~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~ 153 (236)
T cd03253 82 QDTVLFN-DTIGYNIRYGRP-D--ATDE----EVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL 153 (236)
T ss_pred CCChhhc-chHHHHHhhcCC-C--CCHH----HHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9998886 599999987532 1 1211 133334444443322111 013457899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++. + ..+|++++|++|+++..|+.++..
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999999864 8999999999974 5 459999999999999999887654
No 255
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-41 Score=378.78 Aligned_cols=214 Identities=22% Similarity=0.409 Sum_probs=183.7
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~ 119 (643)
++++++++++.++ .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 264 ~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 264 TVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred cEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 4678899988753 48999999999999999999999999999999999999999999999987643 23456799
Q ss_pred EEccC---CCCCCCCCHHHHHHHHHHhc---C----CC-CHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHH
Q 006505 120 YVTQR---DTLFPLLTVEETLMFSAKLR---L----RL-PQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 120 yv~Q~---~~l~~~lTv~E~l~~~~~~~---~----~~-~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerq 187 (643)
|++|+ ..+++.+||.||+.+....+ . +. ..+..+++++++++.+|+. +.. ++++.+|||||||
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~q 416 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-----NQNITELSGGNQQ 416 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc-----cCccccCChHHHH
Confidence 99998 46889999999998753211 0 11 2233345688999999996 555 4467899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++ .+.++||++++|++|+++..++.
T Consensus 417 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 417 KVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 999999999999999999999999999999999999999874 999999999997 58899999999999999988865
No 256
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=7.4e-41 Score=328.83 Aligned_cols=179 Identities=36% Similarity=0.583 Sum_probs=155.6
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----hhhcccEEEEccCCC--CC
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----AQFRKVSGYVTQRDT--LF 128 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~--l~ 128 (643)
+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++|++. ++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 45679999999999999999999999999999999999999999999999988631 234677999999973 45
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 006505 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208 (643)
Q Consensus 129 ~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPt 208 (643)
..||+||+.+..... +.+.++.+++++++++.+|+.+..+ +.+.+||||||||++||+||+.+|++++|||||
T Consensus 83 -~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 83 -AADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASGLRE-----RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred -cccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchhhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 469999999865432 2234455667899999999987664 467899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~ 242 (643)
+|||+.++..+.+.|++++++ |+|||++||+++
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~~-~~tili~sH~~~ 188 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRAE-GMTVVISTHDVD 188 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHHc-CCEEEEEeeccc
Confidence 999999999999999999874 999999999986
No 257
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-41 Score=363.20 Aligned_cols=213 Identities=35% Similarity=0.518 Sum_probs=187.7
Q ss_pred hhhcccccccccccc-eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRR-VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~-iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
.++.+|++..|++++ ||+++||+|++||-+||+|+|||||||++|+|.+..+ .+|+|++||+++.. +.+|+.|||
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence 477899999999888 9999999999999999999999999999999999999 89999999998743 678999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
||||..||.+ ||.+|+.++.. ..+ .++|-++.++.|+.+.. +|.+| +....|||||||||++||
T Consensus 430 VPQd~~LFnd-TIl~NI~YGn~---sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VG-erG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 430 VPQDSVLFND-TILYNIKYGNP---SAS----DEEVVEACKRAGLHDVISRLPDGYQTLVG-ERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred eCCcccccch-hHHHHhhcCCC---CcC----HHHHHHHHHHcCcHHHHHhccccchhhHh-hcccccccchHHHHHHHH
Confidence 9999999987 99999998631 112 24566777777776543 34454 456789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|++.+|+|+++|||||.||+.+..++++.+.+.. .|+|+|++.|+.+ ...-||+|++|++|++...|+.+++..
T Consensus 501 a~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 501 AFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999999999954 4899999999985 578899999999999999999999875
No 258
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=8.1e-41 Score=330.74 Aligned_cols=194 Identities=28% Similarity=0.391 Sum_probs=168.4
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEccC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQR 124 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~ 124 (643)
++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++.++|++|+
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (198)
T TIGR01189 2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHL 81 (198)
T ss_pred EEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccC
Confidence 46788889988899999999999999999999999999999999999999999999999987643 2355789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+.+++.+|+.||+.+....+. . + ++++.++++.+|+.+..+ .++..||||||||++||++++.+|++++|
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~--~-~--~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llll 151 (198)
T TIGR01189 82 PGLKPELSALENLHFWAAIHG--G-A--QRTIEDALAAVGLTGFED-----LPAAQLSAGQQRRLALARLWLSRAPLWIL 151 (198)
T ss_pred cccccCCcHHHHHHHHHHHcC--C-c--HHHHHHHHHHcCCHHHhc-----CChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 988998999999988654331 1 1 346788999999987664 46679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
||||+|||+.++..+.+.|++++++ |.|||++||++.. + .+++++.
T Consensus 152 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 152 DEPTTALDKAGVALLAGLLRAHLAR-GGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEEccccc-c--cceEEee
Confidence 9999999999999999999999764 8999999999863 2 4566654
No 259
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=6.3e-41 Score=332.18 Aligned_cols=187 Identities=26% Similarity=0.411 Sum_probs=163.4
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcC--CCCCccEEEECCCcCCc---hh-hcccEEE
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK--LTPQSGSTFVNGSPIDK---AQ-FRKVSGY 120 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~--~~~~~G~I~~~g~~~~~---~~-~~~~i~y 120 (643)
.+++++++|+++.+++|+|+++++||+++|+||||||||||+|+|+|. .+|++|+|.+||+++.. .. .++.++|
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (200)
T cd03217 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL 81 (200)
T ss_pred eEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE
Confidence 467888889888899999999999999999999999999999999999 47899999999998753 12 2446999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++|++.+++..|+++++. ...+.||||||||++||++|+.+|+
T Consensus 82 v~q~~~~~~~~~~~~~l~-------------------------------------~~~~~LS~G~~qrv~laral~~~p~ 124 (200)
T cd03217 82 AFQYPPEIPGVKNADFLR-------------------------------------YVNEGFSGGEKKRNEILQLLLLEPD 124 (200)
T ss_pred eecChhhccCccHHHHHh-------------------------------------hccccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999888887760 0124799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-hcCEEEEEeCCeEEEecChhHHHHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK-MFNSILMLANGSVLHHGTVDLLSVSL 273 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~~~~f 273 (643)
+++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+ ++|++++|++|++++.|+.+ +.+.+
T Consensus 125 illlDEPt~~LD~~~~~~l~~~L~~~~~~-~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~~ 195 (200)
T cd03217 125 LAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE-LALEI 195 (200)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-HHhhh
Confidence 99999999999999999999999999864 899999999997 4666 79999999999999999544 55444
No 260
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-41 Score=375.26 Aligned_cols=217 Identities=29% Similarity=0.518 Sum_probs=187.7
Q ss_pred hhhhccccccccccc---ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhccc
Q 006505 44 ELSKLEEAADSDGVR---RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKV 117 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~---~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~ 117 (643)
..++.+|++..|..+ +||+|+||+|+|||++||+||||+||||+.++|-.++.|++|+|.+||+|+.+ ..+|++
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 346778888888765 59999999999999999999999999999999999999999999999999854 568999
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRAR-----VKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~-----v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+|.|+|.||.. |++|||.|+.. ..+.++..+. +.+.+. ++.+-.||.|| ++...||||||||++||
T Consensus 544 Ig~V~QEPvLFs~-sI~eNI~YG~~---~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VG-EkG~qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 544 IGLVGQEPVLFSG-SIRENIAYGLD---NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVG-EKGSQLSGGQKQRIAIA 616 (716)
T ss_pred eeeeeccceeecc-cHHHHHhcCCC---CCCHHHHHHHHHHhChHHHHH--hCccccccccC-CccccccchHHHHHHHH
Confidence 9999999999998 99999999864 2233333221 223333 34556788886 46679999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||++||+||||||.||+||+++...+.+.|.++.+ ++|||++.|.++ ..+.+|+|+++++|++++.|+.+|+.+
T Consensus 617 RALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 617 RALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999999999999999999999999875 699999999986 468999999999999999999998864
No 261
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=9.1e-41 Score=336.59 Aligned_cols=204 Identities=28% Similarity=0.421 Sum_probs=171.5
Q ss_pred hhcccccccccc-------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEEC--CC--cCCc---
Q 006505 46 SKLEEAADSDGV-------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVN--GS--PIDK--- 111 (643)
Q Consensus 46 ~~~~~~~~~~~~-------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~--g~--~~~~--- 111 (643)
++++|++++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 457888888852 479999999999999999999999999999999999999999999998 43 3321
Q ss_pred h---hh-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 112 A---QF-RKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 112 ~---~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
. .. ++.++|++|++.+++.+||+|++.+..... ....++..+++.++++.+|+.+... +..+.+|||||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~~~LS~G~~q 156 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARLNIPERLW----HLPPATFSGGEQQ 156 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhh----hCCcccCCHHHHH
Confidence 1 12 356999999999999999999998865432 2233445567889999999975321 3467899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|+++.+.
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcceeEecC
Confidence 999999999999999999999999999999999999999764 899999999976 4677999998763
No 262
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-41 Score=363.83 Aligned_cols=216 Identities=30% Similarity=0.491 Sum_probs=195.8
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccE
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVS 118 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i 118 (643)
.++++++|++|+|+..++|+||||++.+||++||+|.||||||||+|+|+|.++|++|+|.+||++... +....-|
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 346789999999999999999999999999999999999999999999999999999999999998743 3345679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLR---LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+.|.|+..+.|+|||.|||.++...+.+ ...+..++++.++|+.+|+.... +..+.+||+||||.|.||+||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~-----~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP-----DTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCCh-----hhhhhhCCHHHHHHHHHHHHH
Confidence 9999999999999999999887655432 26677888999999999986334 446679999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
..++++++|||||+.|+......+.+.+++++++ |.+||++||.++ |++++||||.||.||+.+..++
T Consensus 161 ~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 161 SFDARVLILDEPTAALTVKETERLFDLIRRLKAQ-GVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999875 999999999997 7999999999999999998888
No 263
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.8e-41 Score=348.05 Aligned_cols=212 Identities=24% Similarity=0.351 Sum_probs=180.3
Q ss_pred hhcccccccc--cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 46 SKLEEAADSD--GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
++++|++++| +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.+ .+|+|+++|.++.. ..+++.++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 3578888888 45679999999999999999999999999999999999997 78999999988743 456788999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCC------CcCCCCCHHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGD------DRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~------~~~~~LSGGerqRv~ia~a 194 (643)
+||++.+|+. |++||+.... ..+ .+++.+.++.+||.+..++..+. +....||||||||++||||
T Consensus 82 v~q~~~lf~~-tv~~nl~~~~----~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRa 152 (275)
T cd03289 82 IPQKVFIFSG-TFRKNLDPYG----KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARS 152 (275)
T ss_pred ECCCcccchh-hHHHHhhhcc----CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 9999999986 9999996321 112 23567788899998766543321 1234599999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+.+|++++|||||++||+.+...+.+.|+++. .++|||+++|+++ .+. .+|+|++|++|++++.|+++++..
T Consensus 153 ll~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 153 VLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred HhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 999999999999999999999999999999874 3899999999996 354 599999999999999999998864
No 264
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-41 Score=364.30 Aligned_cols=214 Identities=31% Similarity=0.479 Sum_probs=190.0
Q ss_pred hhhcccccccccccc--eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEE
Q 006505 45 LSKLEEAADSDGVRR--VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~ 119 (643)
.++++|++.+|.+++ +|+|+|+++++||.+||+|+||||||||+++|+|-++|++|+|.+||.++. ++.+++.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 578999999998765 999999999999999999999999999999999999999999999999874 345788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhh-------hcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA-------RVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~-------~vg~~~~~~LSGGerqRv~ia 192 (643)
+++|...+|.+ |+++||.++. +. ..++.+.++++++||++.... .+ ++..+.||||||||++||
T Consensus 416 vl~Qr~hlF~~-Tlr~NL~lA~----~~---AsDEel~~aL~qvgL~~l~~~~p~gl~t~l-ge~G~~LSGGE~rRLAlA 486 (573)
T COG4987 416 VLTQRVHLFSG-TLRDNLRLAN----PD---ASDEELWAALQQVGLEKLLESAPDGLNTWL-GEGGRRLSGGERRRLALA 486 (573)
T ss_pred hhccchHHHHH-HHHHHHhhcC----CC---CCHHHHHHHHHHcCHHHHHHhChhhhhchh-ccCCCcCCchHHHHHHHH
Confidence 99999999997 9999998753 21 123567788999999876533 34 456789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+|++|.++++|||||.|||+.+..++++.|.+.++ |+|+|++||+... .+.||+|++|++|+++++|.++++..
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999999999999999999874 8999999999973 58899999999999999999998864
No 265
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.4e-41 Score=383.27 Aligned_cols=213 Identities=33% Similarity=0.498 Sum_probs=184.4
Q ss_pred hhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 46 SKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 46 ~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++.+|++.+|+ ++++|+|+|++++|||.+||+||||||||||+|+|+|+++|++|+|.+||+++.. ..+|+.++||
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 67899999999 6899999999999999999999999999999999999999999999999988753 6789999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-------hhhhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGL-------EHVAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl-------~~~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+||+.+|.. |++||+.++.. ..++++ +.+.++..++ .+-.||.+| +....||||||||++||||
T Consensus 409 ~Qd~~LF~~-TI~~NI~~g~~---~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vg-e~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 409 SQDPLLFSG-TIRENIALGRP---DATDEE----IEEALKLANAHEFIANLPDGYDTIVG-ERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred cccceeecc-cHHHHHhcCCC---CCCHHH----HHHHHHHhChHHHHHhCcccccceec-CCCccCCHHHHHHHHHHHH
Confidence 999999995 99999998632 123333 3333333332 234577786 6677899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
++++|++|+||||||+||+.+...+.+.++++.+ |+|+|+++|.++. + +.+|+|++|++|++++.|+++++..
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999998873 6899999999963 5 4599999999999999999999875
No 266
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.7e-41 Score=375.96 Aligned_cols=210 Identities=26% Similarity=0.353 Sum_probs=183.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
+++++|++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|.++.. ...++.++|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 4678999999988889999999999999999999999999999999999999999999999976532 2345669999
Q ss_pred ccCCCC--C-C-----CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 122 TQRDTL--F-P-----LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 122 ~Q~~~l--~-~-----~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
+|++.. + + .+||+|++.+. .+.+++++++++.+|+++.. ++++.+|||||||||+||+
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITALL-----DRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHhhh-----hCCcccCCHHHHHHHHHHH
Confidence 998642 1 1 47888887532 12345788999999998766 4467899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++|+++..|++++..
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999875 999999999997 588999999999999999999988753
No 267
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5e-41 Score=382.95 Aligned_cols=214 Identities=33% Similarity=0.552 Sum_probs=187.5
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|++ +++|+|+|++++|||.+||+||||||||||+|+|+|+++|++|+|++||+++.. ..+|+.++
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee
Confidence 4678999999854 579999999999999999999999999999999999999999999999998753 56788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh------hhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA------MARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~------~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
||+|++.+|+. |++||+.++.. +..++++.++++..++++.. ||.+|+ ....||||||||++|||
T Consensus 418 ~v~Q~~~lf~~-ti~~Ni~~~~~-------~~~~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialAR 488 (574)
T PRK11160 418 VVSQRVHLFSA-TLRDNLLLAAP-------NASDEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIAR 488 (574)
T ss_pred EEcccchhhcc-cHHHHhhcCCC-------ccCHHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHH
Confidence 99999999986 99999987531 11235678888999987653 455643 46789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||+++|++++|||||++||+.++..+.+.|+++. .++|+|+++|+++. .+.+|+|++|++|++++.|+.+++.+
T Consensus 489 all~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 489 ALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999999986 38999999999963 46799999999999999999988753
No 268
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-41 Score=313.82 Aligned_cols=203 Identities=29% Similarity=0.502 Sum_probs=182.0
Q ss_pred ccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccCC
Q 006505 49 EEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQRD 125 (643)
Q Consensus 49 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~ 125 (643)
.++-..-+...+|+++|+++.+||..+|.||||||||||+|+++.+.+|++|++++.|++++. +.+|++++|+.|.+
T Consensus 7 kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~p 86 (223)
T COG4619 7 KQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP 86 (223)
T ss_pred HHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCc
Confidence 344445567889999999999999999999999999999999999999999999999999853 67999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.||+. ||++|+.|..++|...+ .++...++|+.+++.+.. .++.+..||||||||++|+|.|...|+||+||
T Consensus 87 aLfg~-tVeDNlifP~~~r~rr~---dr~aa~~llar~~l~~~~----L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 87 ALFGD-TVEDNLIFPWQIRNRRP---DRAAALDLLARFALPDSI----LTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred ccccc-chhhccccchHHhccCC---ChHHHHHHHHHcCCchhh----hcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 99998 99999999988875433 456778899999997643 25577899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
||||+||+.++..|-++|.++.+++++.++.+|||++ +..+++|+++-+..|++
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 9999999999999999999998667999999999997 57899999999999876
No 269
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8e-41 Score=326.52 Aligned_cols=172 Identities=28% Similarity=0.507 Sum_probs=155.8
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
++++++++++| +|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|
T Consensus 4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence 46678888887 9999999999999999999999999999999999999999999999988743 234678999
Q ss_pred EccCC---CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 121 VTQRD---TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 121 v~Q~~---~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
++|++ .+++.+|++||+.+... ||||||||++||+||+.
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALSSL--------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHHhh--------------------------------------cCHHHHHHHHHHHHHcc
Confidence 99984 57888999999976421 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+++|++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999764 899999999997 58899999999999974
No 270
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.6e-41 Score=336.37 Aligned_cols=207 Identities=25% Similarity=0.350 Sum_probs=174.1
Q ss_pred hhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 46 SKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++++++|+. +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 357788888853 579999999999999999999999999999999999999999999999988642 346778999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhh------cCCCcCCCCCHHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR------VGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~------vg~~~~~~LSGGerqRv~ia~a 194 (643)
++|++.+++ .|++||+.+... .. .+++.+.++.+++.+..++. ..++.+..||||||||++||++
T Consensus 83 ~~q~~~l~~-~tv~enl~~~~~----~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lara 153 (221)
T cd03244 83 IPQDPVLFS-GTIRSNLDPFGE----YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARA 153 (221)
T ss_pred ECCCCcccc-chHHHHhCcCCC----CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHH
Confidence 999998877 499999964321 11 23466677777776554321 1134778999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++. .+|++++|++|++++.|+
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 154 LLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999999863 689999999997 354 599999999999998876
No 271
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-40 Score=330.12 Aligned_cols=194 Identities=25% Similarity=0.367 Sum_probs=169.3
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q 123 (643)
+++++++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.. ..+++.++|++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 467899999988899999999999999999999999999999999999999999999999998743 346778999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
+..+++.+||+||+.+..... .. ..++.++++.+++.+..+ .++..||||||||++||++++.+|++++
T Consensus 82 ~~~~~~~~tv~~~~~~~~~~~----~~--~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~~rv~laral~~~p~~li 150 (200)
T PRK13540 82 RSGINPYLTLRENCLYDIHFS----PG--AVGITELCRLFSLEHLID-----YPCGLLSSGQKRQVALLRLWMSKAKLWL 150 (200)
T ss_pred ccccCcCCCHHHHHHHHHhcC----cc--hHHHHHHHHHcCCchhhh-----CChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 998888899999998864321 11 246889999999976553 3567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEE
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSIL 253 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~ 253 (643)
|||||+|||+.++..+.+.|++++++ |.|||++||++.. .+.+|...
T Consensus 151 lDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 151 LDEPLVALDELSLLTIITKIQEHRAK-GGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHc-CCEEEEEeCCchh--ccccchhh
Confidence 99999999999999999999998764 9999999999863 46677544
No 272
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.8e-41 Score=374.93 Aligned_cols=218 Identities=23% Similarity=0.402 Sum_probs=186.6
Q ss_pred hhhhcccccccc---cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECCCcCCc----hhhc
Q 006505 44 ELSKLEEAADSD---GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-QSGSTFVNGSPIDK----AQFR 115 (643)
Q Consensus 44 ~~~~~~~~~~~~---~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-~~G~I~~~g~~~~~----~~~~ 115 (643)
++++++|++++| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+| ++|+|.++|+++.. ...+
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 467899999888 356799999999999999999999999999999999999985 89999999988742 2346
Q ss_pred ccEEEEccCC---CCCCCCCHHHHHHHHHH--hcC--CCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHH
Q 006505 116 KVSGYVTQRD---TLFPLLTVEETLMFSAK--LRL--RLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 116 ~~i~yv~Q~~---~l~~~lTv~E~l~~~~~--~~~--~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerq 187 (643)
+.++|++|+. .+++.+||+||+.++.. ... .....+.+++++++++.+++.+ .. +++++.|||||||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGqkq 410 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASP-----FLPIGRLSGGNQQ 410 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCc-----cCccccCCHHHHH
Confidence 7799999995 58899999999987532 110 1123344567899999999963 34 4467899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||++ ++.++||++++|++|+++..++.+
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999999875 999999999997 588999999999999999887654
Q ss_pred H
Q 006505 268 L 268 (643)
Q Consensus 268 ~ 268 (643)
+
T Consensus 489 ~ 489 (500)
T TIGR02633 489 A 489 (500)
T ss_pred c
Confidence 3
No 273
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.4e-41 Score=392.85 Aligned_cols=212 Identities=29% Similarity=0.444 Sum_probs=183.3
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~ 119 (643)
.++++|++.+|+. +++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++. ...+|+.++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 3678999999864 67999999999999999999999999999999999999999999999999874 356899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+|++.+|+. |++|||.++. ...+ ++++.++++..|+.+.. |+.+|+ ....||||||||++||
T Consensus 557 ~v~Q~~~lf~g-Ti~eNi~l~~---~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLA 627 (710)
T TIGR03796 557 MVDQDIFLFEG-TVRDNLTLWD---PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIA 627 (710)
T ss_pred EEecCChhhhc-cHHHHhhCCC---CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHH
Confidence 99999999986 9999998642 1112 34566677777765433 455653 4678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|++|+||||||+||+.+..++.+.|++ .++|+|++||+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 628 Rall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 628 RALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999999999999999975 3899999999986 457799999999999999999998864
No 274
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=4.5e-41 Score=339.23 Aligned_cols=205 Identities=30% Similarity=0.501 Sum_probs=172.7
Q ss_pred hhhhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcc
Q 006505 43 EELSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRK 116 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~ 116 (643)
.+++++++++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 346788999999864 469999999999999999999999999999999999999999999999987642 34567
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHHHc--CChhhhhhhcCCCcCCCCCHHHHHHH
Q 006505 117 VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQ-----LRARVKSLVKEL--GLEHVAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 117 ~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gl~~~~~~~vg~~~~~~LSGGerqRv 189 (643)
.++|++|++.+++ .||+||+.+..... ...+ ....++++++.+ |+++.. +..++.|||||||||
T Consensus 89 ~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~-----~~~~~~LSgG~~qrv 159 (226)
T cd03248 89 KVSLVGQEPVLFA-RSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEV-----GEKGSQLSGGQKQRV 159 (226)
T ss_pred hEEEEecccHHHh-hhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchh-----hcCCCcCCHHHHHHH
Confidence 7999999998887 59999998754311 1111 112356788888 676554 446789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 190 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++ +.+|++++|++|++
T Consensus 160 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~-~~~d~i~~l~~g~i 226 (226)
T cd03248 160 AIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLS-TV-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHH-HH-HhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999864 689999999997 46 45999999999874
No 275
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.1e-40 Score=324.94 Aligned_cols=176 Identities=36% Similarity=0.659 Sum_probs=156.3
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccC
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQR 124 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~ 124 (643)
+++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++|
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q- 80 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ- 80 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-
Confidence 5678888888889999999999999999999999999999999999999999999999988743 234556888888
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
+++.+|+.+.. ++.++.||||||||++|||+|+.+|++++|
T Consensus 81 ----------------------------------~l~~~gl~~~~-----~~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 81 ----------------------------------ALELLGLAHLA-----DRPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred ----------------------------------HHHHcCCHhHh-----cCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 56677776554 335689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
||||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.+++|++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999997654899999999997 477999999999999998654
No 276
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=8.2e-41 Score=389.53 Aligned_cols=215 Identities=30% Similarity=0.507 Sum_probs=186.4
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|++ +++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.. ..+|+.++
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 3678999999963 579999999999999999999999999999999999999999999999998753 57889999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+|++.+|+. |++|||.++.. ..+ ++++.++++..++.+. .||.+|+ ....||||||||++||
T Consensus 543 ~v~Q~~~lf~~-TI~eNi~~~~~---~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 543 YVPQDPRLFYG-TLRDNIALGAP---YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALA 613 (694)
T ss_pred EECCChhhhhh-hHHHHHhCCCC---CCC----HHHHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHH
Confidence 99999999987 99999986421 112 3456666777766543 3566654 4678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
|||+++|++++||||||+||+.+..++.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+++++.+.
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999999863 799999999986 4688999999999999999999998654
No 277
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=9.6e-41 Score=389.76 Aligned_cols=214 Identities=27% Similarity=0.439 Sum_probs=184.7
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEEE
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~y 120 (643)
.++++|++.+|+ ++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|++||.++. ...+|+.+||
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 367889999996 468999999999999999999999999999999999999999999999998874 3578899999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|+|++.+|+. |++|||.++... ..+ ++++.++++..++.+. .|+.+|+ ....||||||||++|||
T Consensus 553 v~Q~~~lf~g-TI~eNi~l~~~~--~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 553 LPQEPYIFSG-SILENLLLGAKE--NVS----QDEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALAR 624 (708)
T ss_pred EecCceehhH-HHHHHHhccCCC--CCC----HHHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHH
Confidence 9999999987 999999875311 112 2345666776666543 3566643 56789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||+++|++|+||||||+||+.+...+.+.|+++ .|+|+|+++|+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999875 3799999999986 468899999999999999999998754
No 278
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.6e-40 Score=321.82 Aligned_cols=167 Identities=34% Similarity=0.578 Sum_probs=151.9
Q ss_pred hcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 47 KLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++++++|+. +.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|+
T Consensus 2 ~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (173)
T cd03246 2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYL 81 (173)
T ss_pred EEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEE
Confidence 36778888865 569999999999999999999999999999999999999999999999987743 3456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+|++.+++. ||+||+ ||||||||++||++|+.+|++
T Consensus 82 ~q~~~~~~~-tv~~~l-------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 82 PQDDELFSG-SIAENI-------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred CCCCccccC-cHHHHC-------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 999988875 999987 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAA-GATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 9999999999999999999999999864 999999999986 35 68999999999974
No 279
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=371.22 Aligned_cols=214 Identities=24% Similarity=0.391 Sum_probs=183.1
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~ 119 (643)
++++++++++ .+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.+|
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 3566777763 47999999999999999999999999999999999999999999999988743 23456799
Q ss_pred EEccCC---CCCCCCCHHHHHHHHHH--hcC--C-CCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 120 YVTQRD---TLFPLLTVEETLMFSAK--LRL--R-LPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 120 yv~Q~~---~l~~~lTv~E~l~~~~~--~~~--~-~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
||+|++ .+++.+||.||+.+... ... + ...++.+++++++++.+|+. +.. ++++.+|||||||||+
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGekqrv~ 405 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM-----EQAIGLLSGGNQQKVA 405 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc-----cCchhhCCHHHHHHHH
Confidence 999995 57888999999987532 110 1 12334456789999999995 445 4567899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++ ++.++||++++|++|+++..|+++++
T Consensus 406 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 406 IARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999999999875 999999999997 58899999999999999999988765
No 280
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.2e-40 Score=381.18 Aligned_cols=213 Identities=32% Similarity=0.512 Sum_probs=183.4
Q ss_pred hhhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 45 LSKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
.+++++++.+|+. +++|+|+|++++|||.++|+|+||||||||+|+|+|+++|++|+|.+||+++.. ..+++.++|
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 3678899999864 679999999999999999999999999999999999999999999999988753 567899999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|||++.+|+. |++||+.++. ...+ ++++.++++..++++. .|+.+|+ ....||||||||++|||
T Consensus 414 v~Q~~~lf~~-Ti~~Ni~~~~---~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialAR 484 (588)
T PRK13657 414 VFQDAGLFNR-SIEDNIRVGR---PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIAR 484 (588)
T ss_pred EecCcccccc-cHHHHHhcCC---CCCC----HHHHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHH
Confidence 9999999987 9999998752 1112 2345566666666543 3555544 46689999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
||+++|++++||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.+|+|++|++|+++..|+.+++.
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~--~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999998753 799999999985 56889999999999999999988875
No 281
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.5e-40 Score=340.40 Aligned_cols=215 Identities=20% Similarity=0.248 Sum_probs=176.3
Q ss_pred hhhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 44 ELSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 44 ~~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
..+++++++++|++ +.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ..+++.+
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i 97 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhE
Confidence 34678899999876 579999999999999999999999999999999999999999999999988743 3467789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhc------CCCcCCCCCHHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV------GDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~v------g~~~~~~LSGGerqRv~ia 192 (643)
+|++|++.+++. |++||+.... ... .+.+.+.++..++.+..+... -+..+..||||||||++||
T Consensus 98 ~~v~q~~~l~~~-tv~~nl~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~la 168 (257)
T cd03288 98 SIILQDPILFSG-SIRFNLDPEC----KCT----DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLA 168 (257)
T ss_pred EEECCCCccccc-HHHHhcCcCC----CCC----HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHH
Confidence 999999988875 9999985321 111 122334444444443322211 1346689999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
++|+.+|++++|||||+|||+.++..+.+.|++++ + +.|||++||+++. +. .+|++++|++|+++..|+++++.+
T Consensus 169 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 169 RAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVST-IL-DADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHH-HH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999874 3 8999999999974 55 499999999999999999887643
No 282
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=4.1e-40 Score=349.64 Aligned_cols=188 Identities=34% Similarity=0.575 Sum_probs=168.1
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH
Q 006505 76 IVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRA 154 (643)
Q Consensus 76 IlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~ 154 (643)
|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++|++|++.+++.+||+||+.|+...+ +.++++.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR-KVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc-CCCHHHHHH
Confidence 689999999999999999999999999999998743 234577999999999999999999999986543 224455567
Q ss_pred HHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEE
Q 006505 155 RVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTV 234 (643)
Q Consensus 155 ~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tv 234 (643)
+++++++.+||++.. ++.+.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++++++.|+||
T Consensus 80 ~~~~~l~~~~l~~~~-----~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ti 154 (325)
T TIGR01187 80 RVLEALRLVQLEEFA-----DRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITF 154 (325)
T ss_pred HHHHHHHHcCCcchh-----cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 889999999998766 446789999999999999999999999999999999999999999999999987669999
Q ss_pred EEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 235 ILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 235 i~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 155 iivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 155 VFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999997 588999999999999999999998874
No 283
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=4.2e-40 Score=331.75 Aligned_cols=195 Identities=30% Similarity=0.515 Sum_probs=166.8
Q ss_pred EEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCC--CCCCHHHHHHHHHHh
Q 006505 66 CKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLF--PLLTVEETLMFSAKL 143 (643)
Q Consensus 66 ~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~--~~lTv~E~l~~~~~~ 143 (643)
+++++||+++|+||||||||||+++|+|+.+|++|+|.+||+++. ..++.++|++|++.++ ..+|+.||+.++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 468999999999999999999999999999999999999998763 3457799999998764 347999999875321
Q ss_pred cC---CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 006505 144 RL---RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220 (643)
Q Consensus 144 ~~---~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~ 220 (643)
.. ....+..++++.++++.+|+++.. +..+.+||||||||++||++|+.+|+++++||||+|||+.++..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~ 153 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELA-----DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT 153 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 10 112223345688999999998765 3466799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 221 DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 221 ~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.|++++++ |+|+|++||+++ ++.+++|+++++ +|++++.|+++++.
T Consensus 154 ~~l~~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 154 ELFIELAGA-GTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999864 999999999997 588999999999 89999999988764
No 284
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1e-40 Score=388.80 Aligned_cols=212 Identities=29% Similarity=0.481 Sum_probs=181.3
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
.++++|++.+|++ +++|+|+|++++|||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+ ..+++++
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 3678999999863 579999999999999999999999999999999999999999999999998743 5678899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~i 191 (643)
+||+|++.+|+. |++|||.++.. ..+ ++++.++++..++.+. .||.+|+ ....||||||||++|
T Consensus 558 ~~v~Q~~~lF~g-TIreNI~~g~~---~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlal 628 (711)
T TIGR00958 558 ALVGQEPVLFSG-SVRENIAYGLT---DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAI 628 (711)
T ss_pred eEEecCcccccc-CHHHHHhcCCC---CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHH
Confidence 999999999986 99999987531 112 3456677777777643 3555653 467899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||||+++|+|++||||||+||+.+...+.+ .. . . .++|+|+++|+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 629 ARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~-~-~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 629 ARALVRKPRVLILDEATSALDAECEQLLQE-SR-S-R-ASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c-c-CCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999999999999999988 22 2 2 4899999999986 457899999999999999999998864
No 285
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-40 Score=358.11 Aligned_cols=211 Identities=22% Similarity=0.341 Sum_probs=181.4
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv 121 (643)
++++++++.+++. +.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|.+. ++
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----------~i 90 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----------LI 90 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------eE
Confidence 5678888888776 4699999999999999999999999999999999999999999999999642 22
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
.+...+.+.+|++||+.+..... ..+.++..++++++++.+++.+..+ ++++.||||||||++||+||+.+|++
T Consensus 91 ~~~~~l~~~lTV~EnL~l~~~~~-~~~~~e~~e~i~elLe~lgL~~~ld-----~~~~~LSGGQrQRVaLArAL~~~P~L 164 (549)
T PRK13545 91 AISSGLNGQLTGIENIELKGLMM-GLTKEKIKEIIPEIIEFADIGKFIY-----QPVKTYSSGMKSRLGFAISVHINPDI 164 (549)
T ss_pred EeccccCCCCcHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHcCChhHhh-----CCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 23445667789999998755432 2234555667889999999987764 46789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSL 273 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 273 (643)
|||||||+|||+.++..+++.|+++++ .|+|||++||+++ .+.++||++++|++|++++.|+++++...+
T Consensus 165 LLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 165 LVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999999976 4999999999997 588899999999999999999998876543
No 286
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.3e-40 Score=328.63 Aligned_cols=196 Identities=25% Similarity=0.354 Sum_probs=166.6
Q ss_pred hhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 46 SKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++++++|+. +.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 7 l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 86 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTI 86 (207)
T ss_pred EEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 567888888875 479999999999999999999999999999999999999999999999987632 345678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++|++.+++. |++||+.+.. .... +.+.+.++ + +..+..||||||||++|||+|+.+|+
T Consensus 87 v~q~~~~~~~-tv~~~l~~~~----~~~~----~~~~~~l~---~---------~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 87 IPQDPTLFSG-TIRSNLDPFD----EYSD----EEIYGALR---V---------SEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EecCCcccCc-cHHHHhcccC----CCCH----HHHHHHhh---c---------cCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999988875 9999996531 1121 12333333 1 34678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
+++|||||+|||+.++..+.+.|++++ + |+|+|++||+++. +.. +|++++|++|+++..|++
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~-~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRT-IID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHH-Hhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999984 3 8999999999974 544 999999999999988763
No 287
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.7e-40 Score=321.61 Aligned_cols=173 Identities=32% Similarity=0.552 Sum_probs=155.1
Q ss_pred hccccccccccc--ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEc
Q 006505 47 KLEEAADSDGVR--RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~--~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~ 122 (643)
++++++++|+.+ ++++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|++
T Consensus 2 ~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 81 (178)
T cd03247 2 SINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN 81 (178)
T ss_pred EEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEc
Confidence 356777887664 79999999999999999999999999999999999999999999999987642 34567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|++.+++ .|++||+ +..||||||||++|||+|+.+|+++
T Consensus 82 q~~~~~~-~tv~~~i----------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 82 QRPYLFD-TTLRNNL----------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred cCCeeec-ccHHHhh----------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9998886 5999987 3589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+|||||+|||+.++..+++.|++++ + +.|||++||+++. + +.+|++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 9999999999999999999999985 3 8999999999973 5 579999999999998764
No 288
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-39 Score=333.27 Aligned_cols=198 Identities=24% Similarity=0.350 Sum_probs=174.0
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
..+++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+ +++++|+..+.+.+|+.|
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~e 104 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE----------VSVIAISAGLSGQLTGIE 104 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE----------EeEEecccCCCCCCcHHH
Confidence 4567999999999999999999999999999999999999999999999984 356778877788899999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTS 215 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 215 (643)
|+.+..... ..+.++..+.++++++.+++.+.. +..+++||||||||++||++|+.+|++|+|||||+|||+.+
T Consensus 105 nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~ 178 (264)
T PRK13546 105 NIEFKMLCM-GFKRKEIKAMTPKIIEFSELGEFI-----YQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTF 178 (264)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhh-----cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 998765432 223445556678889999998766 44678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 216 ALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 216 ~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+++..|+++++.+
T Consensus 179 ~~~l~~~L~~~~~-~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 179 AQKCLDKIYEFKE-QNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999976 4999999999987 5788999999999999999999887754
No 289
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.2e-40 Score=377.93 Aligned_cols=213 Identities=26% Similarity=0.431 Sum_probs=184.9
Q ss_pred hhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC---chhhcccEEE
Q 006505 46 SKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID---KAQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~---~~~~~~~i~y 120 (643)
++++|++.+|.+ +++|+|+|+++++||.++|+|+||||||||+|+|+|+++|++|+|++||++++ ...+++.++|
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~ 410 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceE
Confidence 668899988854 67999999999999999999999999999999999999999999999998864 3567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|+|++.+|+. |++|||.++.. ++..+++++++++.+|+++. .|+.+|+. .+.||||||||++|||
T Consensus 411 v~Q~~~lf~~-Ti~~Ni~~~~~------~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 411 VSQDVVLFND-TIANNIAYGRT------EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIAR 482 (571)
T ss_pred EccCcccccc-cHHHHHhcCCC------CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHH
Confidence 9999999987 99999986521 01123467777888877643 35556543 5689999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+++++|++++||||||+||+.++..+++.|+++++ ++|+|++||+++ ..+.||+|++|++|+++..|+.+++.
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999998853 799999999985 57889999999999999999999874
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-40 Score=368.47 Aligned_cols=214 Identities=20% Similarity=0.375 Sum_probs=181.4
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
.+++++++. +.+++|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 257 ~l~~~~~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 332 (501)
T PRK11288 257 RLRLDGLKG----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332 (501)
T ss_pred EEEEecccc----CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEE
Confidence 455666652 258999999999999999999999999999999999999999999999987642 234567999
Q ss_pred EccCC---CCCCCCCHHHHHHHHHHhcC---C--CCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 121 VTQRD---TLFPLLTVEETLMFSAKLRL---R--LPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 121 v~Q~~---~l~~~lTv~E~l~~~~~~~~---~--~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
++|++ .+++.+|+.||+.+...... . ...+..++.++++++.+|+. +.. ++++..|||||||||+|
T Consensus 333 ~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR-----EQLIMNLSGGNQQKAIL 407 (501)
T ss_pred cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCc-----cCccccCCHHHHHHHHH
Confidence 99996 48899999999987532110 0 02233345788999999994 455 44678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
|++|+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++ ++.++||++++|++|++++.|++++.
T Consensus 408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999999999999875 999999999997 58899999999999999999987764
No 291
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.9e-40 Score=372.22 Aligned_cols=215 Identities=30% Similarity=0.504 Sum_probs=180.1
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|++ +++|+|+|+++++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.. ..+++.++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 395 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG 395 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheE
Confidence 3678899999853 689999999999999999999999999999999999999999999999988743 46788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+|++.+|+. |++||+.+... ..+++ ++.+.++..++++. .|+.+| +....||||||||++||
T Consensus 396 ~v~q~~~lf~~-ti~~Ni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~-~~g~~LSgGq~qrl~lA 466 (544)
T TIGR01842 396 YLPQDVELFPG-TVAENIARFGE---NADPE----KIIEAAKLAGVHELILRLPDGYDTVIG-PGGATLSGGQRQRIALA 466 (544)
T ss_pred EecCCcccccc-cHHHHHhccCC---CCCHH----HHHHHHHHhChHHHHHhCccccccccC-CCcCCCCHHHHHHHHHH
Confidence 99999999987 99999975321 11222 23333444443321 244443 45788999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|++++|||||+|||+.++.++.+.|+++.+ .|+|+|+++|+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 467 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999999999865 3899999999986 457899999999999999999887753
No 292
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.3e-39 Score=366.28 Aligned_cols=214 Identities=21% Similarity=0.348 Sum_probs=180.8
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch----hhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA----QFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~----~~~~~i~ 119 (643)
+++++++++. .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++... ..++.++
T Consensus 267 ~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 267 PVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred ceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 3677788773 269999999999999999999999999999999999999999999999877431 2346799
Q ss_pred EEccCC---CCCCCCCHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 120 YVTQRD---TLFPLLTVEETLMFSAK--LRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 120 yv~Q~~---~l~~~lTv~E~l~~~~~--~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|++|++ .+++.+|+.||+..... ..........+++++++++.+|++ +.. ++++++|||||||||+||+
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~kqrl~la~ 416 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHA-----EQAARTLSGGNQQKVLIAK 416 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCc-----cCccccCCcHHHHHHHHHH
Confidence 999984 48888999999864311 111111223345788999999996 555 4467899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++ ++.++||++++|++|+++..|+++++
T Consensus 417 al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 417 CLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999999999999999875 999999999997 58899999999999999999877653
No 293
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.8e-40 Score=382.27 Aligned_cols=214 Identities=31% Similarity=0.500 Sum_probs=183.2
Q ss_pred hhhccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.+++++++.+|+ ++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|++||+++.. ..+|+.++
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 367899999985 3569999999999999999999999999999999999999999999999998743 56789999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+|++.+|+. |++||+.++.. ..+ ++++.++++..++.+. .|+.+|+ ....||||||||++||
T Consensus 535 ~v~q~~~lf~~-ti~eNi~~~~~---~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lA 605 (694)
T TIGR01846 535 VVLQENVLFSR-SIRDNIALCNP---GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIA 605 (694)
T ss_pred EEccCCeehhh-hHHHHHhcCCC---CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHH
Confidence 99999999986 99999976421 112 2345566666665543 3555644 4678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|++++||||||+||+.++..+.+.|+++. .++|+|++||+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 606 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 606 RALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999985 3899999999996 346799999999999999999988753
No 294
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-39 Score=323.33 Aligned_cols=191 Identities=29% Similarity=0.416 Sum_probs=157.6
Q ss_pred hccccccccccc-----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEE
Q 006505 47 KLEEAADSDGVR-----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~~~-----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv 121 (643)
+++|++++|+++ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|+
T Consensus 2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----------~i~~~ 71 (204)
T cd03250 2 SVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----------SIAYV 71 (204)
T ss_pred EEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----------EEEEE
Confidence 467888888764 699999999999999999999999999999999999999999999998 59999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhh------cCCCcCCCCCHHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR------VGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~------vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+|++.+++ .|++||+.+.... .. +...+.++.+++.+..+.. .-+..+.+||||||||++||++|
T Consensus 72 ~q~~~l~~-~t~~enl~~~~~~----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 72 SQEPWIQN-GTIRENILFGKPF----DE----ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred ecCchhcc-CcHHHHhccCCCc----CH----HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 99998885 5999999874321 11 1233444555554322211 11345789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIID-MLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
+.+|++++|||||+|||+.++..+.+ ++++++++ |+|||++||+++ .+.. +|++++|++|+
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 99999999999999999999999998 56777664 899999999997 3555 99999999985
No 295
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=367.07 Aligned_cols=216 Identities=31% Similarity=0.462 Sum_probs=189.3
Q ss_pred hhhcccccccccc----cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hh----
Q 006505 45 LSKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQ---- 113 (643)
Q Consensus 45 ~~~~~~~~~~~~~----~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~---- 113 (643)
+++++|++++|+. +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.+||+++.. .+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 5678899988853 579999999999999999999999999999999999999999999999998753 22
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
.++.++|++|+..+++.+|+.||+.+..... +.+.++.++++.++++.+|+.+..+ ..+..||||||||++|||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~~~~-----~~~~~LS~Gq~qrv~LAr 157 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYA-GLERKQRLLRAQELLQRLGLEDRVE-----YQPSQLSGGQQQRVSIAR 157 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhhhc-----CCcccCCHHHHHHHHHHH
Confidence 2467999999999999999999999865432 2244556678899999999987664 467799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|++||+++ ..+.+|++++|++|++++.|++++.
T Consensus 158 aL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCcccc
Confidence 99999999999999999999999999999999976 4999999999986 3467999999999999999987643
No 296
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=8.4e-40 Score=373.57 Aligned_cols=213 Identities=29% Similarity=0.471 Sum_probs=183.1
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
.++++|++.+|+. +.+|+|+|++++|||.++|+||||||||||+|+|+|+++|++|+|.+||.+++. ..+++.+
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 3678899988854 579999999999999999999999999999999999999999999999988743 5678899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~i 191 (643)
+|+||++.+|+. |++||+.++.. ..+ ++++.++++..|+.+.. ++.+|+ ....||||||||++|
T Consensus 417 ~~~~Q~~~lf~~-Ti~~Ni~~~~~---~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 417 ALVPQDPVLFAA-SVMENIRYGRP---DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAI 487 (576)
T ss_pred eEEccCCccccc-cHHHHHhcCCC---CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHH
Confidence 999999999987 99999976421 112 34566777777765433 344543 466899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|||++++|++++||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.+|+|++|++|+++..|+++++.
T Consensus 488 aRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 488 ARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC--CCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 9999999999999999999999999999999999853 899999999985 46789999999999999999988764
No 297
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.5e-39 Score=323.75 Aligned_cols=201 Identities=24% Similarity=0.373 Sum_probs=163.7
Q ss_pred hccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-------hhhcccE
Q 006505 47 KLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQFRKVS 118 (643)
Q Consensus 47 ~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-------~~~~~~i 118 (643)
++.++..+|+ .+++++|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 3567777786 4679999999999999999999999999999999999999999999999987632 1235679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhh------cCCCcCCCCCHHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMAR------VGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~------vg~~~~~~LSGGerqRv~ia 192 (643)
+|++|++.+++ .|++||+.+... ... ++..++++.+++.+..+.. .-+..+..||||||||++||
T Consensus 82 ~~~~q~~~~~~-~t~~~nl~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03290 82 AYAAQKPWLLN-ATVEENITFGSP----FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA 152 (218)
T ss_pred EEEcCCCcccc-ccHHHHHhhcCc----CCH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence 99999998874 699999987431 111 2234566667765433211 11346789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIID--MLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~--~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
++|+.+|+++||||||+|||+.++..+++ +++.+.+ .|.|+|++||+++. + ..+|++++|++|+
T Consensus 153 ral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred HHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999999999998 6666654 58999999999973 5 5799999999874
No 298
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.2e-39 Score=371.46 Aligned_cols=213 Identities=26% Similarity=0.423 Sum_probs=181.3
Q ss_pred hhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 46 SKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 46 ~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
+++++++.+|+. +.+|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||+++.. ..+++.++|
T Consensus 314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 393 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAV 393 (569)
T ss_pred EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEE
Confidence 567888888854 579999999999999999999999999999999999999999999999998743 467889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|+|++.+|+. |++||+.++.. ..+ ++++++.++..++.+. .|+.+|+ ....||||||||++|||
T Consensus 394 v~q~~~lf~~-ti~~Ni~~~~~---~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lAR 464 (569)
T PRK10789 394 VSQTPFLFSD-TVANNIALGRP---DAT----QQEIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIAR 464 (569)
T ss_pred EccCCeeccc-cHHHHHhcCCC---CCC----HHHHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHH
Confidence 9999999986 99999986421 112 2345556666665432 3555543 46789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||+++|++++|||||++||+.++..+.+.|+++. .|+|+|++||+++ ..+.+|+|++|++|+++..|+.+++.+
T Consensus 465 all~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 465 ALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999985 3899999999986 457799999999999999999988753
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.7e-39 Score=370.98 Aligned_cols=214 Identities=25% Similarity=0.411 Sum_probs=179.8
Q ss_pred hhhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 45 LSKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
.++++|++.+|++ +++|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+++.++|
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 3678999999975 579999999999999999999999999999999999999999999999988743 567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|+|++.+++. |++||+.++.. ..+++ ++.+.++..++.+. .++.+| +....||||||||++|||
T Consensus 414 v~q~~~lf~~-ti~~Ni~~~~~---~~~~~----~~~~a~~~~~~~~~i~~l~~g~~t~~~-~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 414 VFQDAGLFNR-SIRENIRLGRE---GATDE----EVYEAAKAAAAHDFILKRSNGYDTLVG-ERGNRLSGGERQRLAIAR 484 (585)
T ss_pred EccCCccCcc-cHHHHHhcCCC---CCCHH----HHHHHHHHhCcHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHH
Confidence 9999999875 99999987521 11222 23344444444332 234443 457789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||+.+|++++|||||+|||+.++..+.+.|+++. .++|+|++||+++. + +.+|+|++|++|+++..|+.+++.+
T Consensus 485 all~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 485 AILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLST-V-RNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHH-H-HcCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999999885 38999999999963 4 6799999999999999999888753
No 300
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.1e-39 Score=344.81 Aligned_cols=214 Identities=31% Similarity=0.427 Sum_probs=193.9
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
.+++++++|.|+...+++|||+++++||+.||+|.||||||||+|+|.|.++|++|+|++||+++.- +..+..||+
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcE
Confidence 4678899999999999999999999999999999999999999999999999999999999998742 456778999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRL--RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~--~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|.|+..|+|++||.||+.++..-.. ....++.+++++++.++.||+-.. +.++.+||-||||||.|-++|..+
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp-----~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP-----DAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCc-----cceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999999999998865321 125667788999999999997555 346679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
|++|+|||||+-|-|....++++.|++++++ |+|||++||-+. |+.++|||+.||.+|+++..-+
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~-G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAE-GKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999985 999999999997 7999999999999999887665
No 301
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-39 Score=313.42 Aligned_cols=165 Identities=39% Similarity=0.620 Sum_probs=149.6
Q ss_pred hccccccccccc--ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEE
Q 006505 47 KLEEAADSDGVR--RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYV 121 (643)
Q Consensus 47 ~~~~~~~~~~~~--~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv 121 (643)
++++++++|+++ .+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|+
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (171)
T cd03228 2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYV 81 (171)
T ss_pred EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEE
Confidence 467888888775 79999999999999999999999999999999999999999999999987642 3456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+|++.+++ .|+.||+ ||||||||++||++|+.+|++
T Consensus 82 ~~~~~~~~-~t~~e~l-------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 82 PQDPFLFS-GTIRENI-------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred cCCchhcc-chHHHHh-------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99988776 5998886 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
++|||||+|||+.++.++.+.|++++ + ++|||++||+++ ++.. +|++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999985 3 799999999997 4655 99999999885
No 302
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.4e-39 Score=308.74 Aligned_cols=157 Identities=31% Similarity=0.501 Sum_probs=145.1
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEEEc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~ 122 (643)
++++++++|+++++++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 2 ~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~ 81 (163)
T cd03216 2 ELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVY 81 (163)
T ss_pred EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEE
Confidence 46788899988899999999999999999999999999999999999999999999999988753 22456789998
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
| ||||||||++||++|+.+|+++
T Consensus 82 q---------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 82 Q---------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred e---------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 8 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999864 899999999987 4788999999999999875
No 303
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.7e-39 Score=316.83 Aligned_cols=192 Identities=22% Similarity=0.308 Sum_probs=163.6
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+.+++++++|+++.+++ +|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ++.++|++|++
T Consensus 2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-~~~~~~~~~~~ 79 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-KPYCTYIGHNL 79 (195)
T ss_pred eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh-hhhEEeccCCc
Confidence 45788889998766665 99999999999999999999999999999999999999999999875422 45689999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+++..||+||+.+..... . ..++++++++.+++.+..+ +.++.||||||||++||++++.+|++++||
T Consensus 80 ~~~~~~tv~~~l~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~~rl~la~al~~~p~~lllD 148 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIY-N-----SAETLYAAIHYFKLHDLLD-----EKCYSLSSGMQKIVAIARLIACQSDLWLLD 148 (195)
T ss_pred CCCccCCHHHHHHHHHHhc-c-----cHHHHHHHHHHcCCHhhhc-----cChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8888899999998765332 1 2346788899999987663 467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEE
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSIL 253 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~ 253 (643)
|||+|||+.++..+.+.|++.++ .|+|+|++||+++. .+.+|-+.
T Consensus 149 EP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 149 EVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCccc--cchhheec
Confidence 99999999999999999987765 48999999999863 34567553
No 304
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-39 Score=321.11 Aligned_cols=211 Identities=31% Similarity=0.461 Sum_probs=189.1
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEc-cCCCCCCCCCH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVT-QRDTLFPLLTV 133 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~-Q~~~l~~~lTv 133 (643)
...+++|+||+|++|++++++|||||||||+||+|+|++.|++|.|.++|.+.-. +.+-+.+++|+ |...+...+.+
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 4568999999999999999999999999999999999999999999999987632 45667788877 55677777888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 006505 134 EETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213 (643)
Q Consensus 134 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~ 213 (643)
.|.+.....+. ..+.++..++.+.+.+.|+|+... +.+++.||-|||.|+.||.+|+++|++|||||||-|||.
T Consensus 116 ~ds~~v~~~Iy-~Ipd~~F~~r~~~l~eiLdl~~~l-----k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 116 LDSLEVLKLIY-EIPDDEFAERLDFLTEILDLEGFL-----KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhhHHHHHHHH-hCCHHHHHHHHHHHHHHhcchhhh-----hhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 88887655443 346788889999999999998776 447899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHH
Q 006505 214 TSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274 (643)
Q Consensus 214 ~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 274 (643)
.++..+.+.|++..++++.||+.+||+.+ ++.++||||++|++|+++|+|+.+++.+.|.
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999999999999999999999998 5999999999999999999999999987764
No 305
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=307.63 Aligned_cols=219 Identities=29% Similarity=0.495 Sum_probs=196.4
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECC-CcCCc----hhhcccE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG-SPIDK----AQFRKVS 118 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g-~~~~~----~~~~~~i 118 (643)
.++.+++++.++++..+|+|+||++.+||+-+|+|||||||||+|++|+|..+|++|+|+++| .++.. .-.|..|
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 457789999999999999999999999999999999999999999999999999999999999 67654 2346678
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRL-------PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~-------~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
|--+|.|..|+.+||+|||..+.....+. ...+.+++++++|...||.+.++. ....||.||||++.|
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~-----~A~~LSHGqKQwLEI 158 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR-----LAALLSHGQKQWLEI 158 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh-----hhhhhccchhhhhhh
Confidence 99999999999999999999986533221 234456789999999999988755 456899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.-++++|++|+||||++|+--....+.-++|+.++. +++|+++.||+.. +.+++|+|.+|++|.+...|+.+++.
T Consensus 159 GMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~F-vr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 159 GMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGF-VREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred heeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHH-HHHhhheeEEEeccceeecccHHHhh
Confidence 9999999999999999999999999999999999985 6899999999986 89999999999999999999998874
No 306
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=360.75 Aligned_cols=209 Identities=23% Similarity=0.344 Sum_probs=178.3
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
++++|++++|+++++|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|. +.++|++|++
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~i~~~~q~~ 73 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--------ERLGKLRQDQ 73 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--------CEEEEEeccC
Confidence 46789999999889999999999999999999999999999999999999999999999873 3489999999
Q ss_pred CCCCCCCHHHHHHHHHH-hc-----------CCC---C----------------HHHHHHHHHHHHHHcCChhhhhhhcC
Q 006505 126 TLFPLLTVEETLMFSAK-LR-----------LRL---P----------------QAQLRARVKSLVKELGLEHVAMARVG 174 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~-~~-----------~~~---~----------------~~~~~~~v~~~l~~lgl~~~~~~~vg 174 (643)
.+++.+||+|++.++.. .+ .+. . ..+.+++++++++.+|+.+..+
T Consensus 74 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~---- 149 (530)
T PRK15064 74 FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH---- 149 (530)
T ss_pred CcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh----
Confidence 89999999999987531 00 000 0 0122457889999999975331
Q ss_pred CCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 175 DDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 175 ~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
++.+.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|||++ .+.++||++++
T Consensus 150 ~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~-~~~~~~d~i~~ 224 (530)
T PRK15064 150 YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRH-FLNSVCTHMAD 224 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHH-HHHhhcceEEE
Confidence 235789999999999999999999999999999999999999999999863 4899999999997 48899999999
Q ss_pred EeCCeE-EEecChhHHHH
Q 006505 255 LANGSV-LHHGTVDLLSV 271 (643)
Q Consensus 255 L~~G~i-v~~G~~~~~~~ 271 (643)
|++|++ ++.|++++..+
T Consensus 225 l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 225 LDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EeCCEEEEecCCHHHHHH
Confidence 999999 58898877643
No 307
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.5e-38 Score=318.18 Aligned_cols=195 Identities=19% Similarity=0.252 Sum_probs=162.5
Q ss_pred ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEE-ECCCcCCchhhcccEEEEccCCCCCCCCCHHHHH
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF-VNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETL 137 (643)
Q Consensus 59 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~-~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 137 (643)
++|+|||+++++||+++|+||||||||||+|+|+|+.+|++|+|. ++|... .+.+++.+++.+|++||+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~enl 70 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL----------PLGANSFILPGLTGEENA 70 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee----------ccccccccCCcCcHHHHH
Confidence 479999999999999999999999999999999999999999997 777543 123456788999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSAL 217 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~ 217 (643)
.+..... +...++. .+.+.+.+++++..++ .+++||||||||++||++|+.+|++++|||||+++|+.++.
T Consensus 71 ~~~~~~~-~~~~~~~---~~~~~~~~~l~~~~~~-----~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~ 141 (213)
T PRK15177 71 RMMASLY-GLDGDEF---SHFCYQLTQLEQCYTD-----RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQL 141 (213)
T ss_pred HHHHHHc-CCCHHHH---HHHHHHHhChhHHhhc-----hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHH
Confidence 9876543 2222222 2334456677766544 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHH
Q 006505 218 QIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRM 275 (643)
Q Consensus 218 ~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 275 (643)
.+.+.|.+..+ ++|+|++||+++ .+.+++|++++|++|++++.|+.+++.++++.
T Consensus 142 ~~~~~l~~~~~--~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 142 RMQAALACQLQ--QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHhh--CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99998866543 468999999997 47789999999999999999999998776553
No 308
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-39 Score=358.27 Aligned_cols=214 Identities=20% Similarity=0.374 Sum_probs=179.6
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEE
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~ 119 (643)
++++++|+++++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 467888988773 569999999999999999999999999999999999999999999999988743 12356699
Q ss_pred EEccCC---CCCCCCCHHHHHHHH-----HHhcCC-CCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHH
Q 006505 120 YVTQRD---TLFPLLTVEETLMFS-----AKLRLR-LPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 120 yv~Q~~---~l~~~lTv~E~l~~~-----~~~~~~-~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv 189 (643)
|++|++ .+++.+|+.+|..+. ... .+ ...+..+++++++++.+++. +.. ++++.+|||||||||
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrv 400 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNK-VGLLDNSRMKSDTQWVIDSMRVKTPGH-----RTQIGSLSGGNQQKV 400 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhccc-ccccCcHHHHHHHHHHHHhcCccCCCc-----ccccccCCcHHHHHH
Confidence 999985 468888888774321 111 01 12234456788999999985 333 457789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 190 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||++ ++.++||++++|++|+++..++.+
T Consensus 401 ~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 401 IIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChH-HHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999999999875 999999999997 588999999999999999877553
No 309
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=328.78 Aligned_cols=223 Identities=26% Similarity=0.408 Sum_probs=198.6
Q ss_pred hhhhhccccccccc-----------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc
Q 006505 43 EELSKLEEAADSDG-----------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK 111 (643)
Q Consensus 43 ~~~~~~~~~~~~~~-----------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~ 111 (643)
..+++.+++...|. ...++++||+++++||-++|+|.||||||||-.+|.+++++. |+|.++|++++.
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 34566777665552 246899999999999999999999999999999999998775 999999999853
Q ss_pred ------hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCC
Q 006505 112 ------AQFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRL-PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGIS 182 (643)
Q Consensus 112 ------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LS 182 (643)
..+|+++-.|+||+ .|-|.+||.|-+.-+.....+. +.+++++++.+.|+++||+... -+++|.+.|
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~----r~RYPhEFS 428 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT----RNRYPHEFS 428 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH----hhcCCcccC
Confidence 34678899999997 5899999999999998877643 7888999999999999997532 166999999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 183 GGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 183 GGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
||||||++||||++.+|++++||||||+||-.-+.+++++|+++.++.|.+-+++|||+. -+..+||+|+||++|+||+
T Consensus 429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~GkiVE 507 (534)
T COG4172 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDGKIVE 507 (534)
T ss_pred cchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCCEEee
Confidence 999999999999999999999999999999999999999999999999999999999997 4888999999999999999
Q ss_pred ecChhHHHH
Q 006505 263 HGTVDLLSV 271 (643)
Q Consensus 263 ~G~~~~~~~ 271 (643)
+|+.+++.+
T Consensus 508 ~G~~~~if~ 516 (534)
T COG4172 508 QGPTEAVFA 516 (534)
T ss_pred eCCHHHHhc
Confidence 999998753
No 310
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6e-39 Score=359.57 Aligned_cols=216 Identities=23% Similarity=0.317 Sum_probs=177.9
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECCCcCCc----hhhccc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-QSGSTFVNGSPIDK----AQFRKV 117 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-~~G~I~~~g~~~~~----~~~~~~ 117 (643)
.++++++|++++|+++.+|+|+||++++||+++|+||||||||||+|+|+|+.++ ++|+|+++|+++.. ...++.
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 3468899999999888899999999999999999999999999999999998775 69999999987532 234567
Q ss_pred EEEEccCCCCCC--CCCHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 118 SGYVTQRDTLFP--LLTVEETLMFSAKL--RL-RLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 118 i~yv~Q~~~l~~--~lTv~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
++|++|++.++. ..|++|++.+.... .. ....++.+++++++++.+|+.+ .. ++++.+|||||||||+|
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrv~l 412 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-----DAPFHSLSWGQQRLALI 412 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-----cCchhhCCHHHHHHHHH
Confidence 999999876543 35777776543211 00 1112233567899999999986 55 44678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-hcCEEEEEeCCeEEEec
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK-MFNSILMLANGSVLHHG 264 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G 264 (643)
|++|+.+|++|||||||+|||+.++..+.+.|++++++.+.|||++|||++ ++.+ ++|++++|++|++++.-
T Consensus 413 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 413 VRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999999999999998753457999999997 4766 58999999999987754
No 311
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-38 Score=306.21 Aligned_cols=228 Identities=26% Similarity=0.377 Sum_probs=199.6
Q ss_pred hhhccccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEECCCcCCc----hhhccc
Q 006505 45 LSKLEEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL--TPQSGSTFVNGSPIDK----AQFRKV 117 (643)
Q Consensus 45 ~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~--~~~~G~I~~~g~~~~~----~~~~~~ 117 (643)
+++++|++.+-+.+ .||++||++|++||+.+||||||||||||.++|+|.- ++++|+|.++|+++.. ++.|+-
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 46788998888884 9999999999999999999999999999999999985 5679999999999854 456777
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLP--QAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+...+|.|.=+|..|+.+.|..+...+.+.. ..+..+++++.++.++++. ..++.+. .++|||||||.-|+..
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkKR~EilQ~ 158 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKKRNEILQL 158 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHHHHHHHHH
Confidence 8899999999999999999998776533221 2356678899999999986 4544332 4899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc--CEEEEEeCCeEEEecChhHHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMF--NSILMLANGSVLHHGTVDLLSVS 272 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~--D~v~~L~~G~iv~~G~~~~~~~~ 272 (643)
++.+|++.+||||-||||..+-..+.+.+++++.+ |.+++++||.. .+.++. |+|.+|.+|+|+..|.+ ++.++
T Consensus 159 ~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 159 LLLEPKLAILDEPDSGLDIDALKIVAEGINALREE-GRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred HhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 99999999999999999999999999999999875 99999999996 477776 99999999999999999 89999
Q ss_pred HHHcCCCC
Q 006505 273 LRMMGLQL 280 (643)
Q Consensus 273 f~~~g~~~ 280 (643)
++..||.|
T Consensus 235 le~~gy~~ 242 (251)
T COG0396 235 LEEKGYDW 242 (251)
T ss_pred HHHhchHH
Confidence 99999864
No 312
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.6e-38 Score=327.78 Aligned_cols=203 Identities=28% Similarity=0.389 Sum_probs=167.0
Q ss_pred hhhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEE
Q 006505 42 QEELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYV 121 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv 121 (643)
..+.++++++++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 36 ~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------~i~yv 103 (282)
T cd03291 36 DDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------RISFS 103 (282)
T ss_pred CCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------EEEEE
Confidence 3345678888775 46799999999999999999999999999999999999999999999988 38999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhh-------hcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMA-------RVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~-------~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+|++.+++. ||+||+.+.... .. .++.+.++.+++.+..+. .+ +..+..||||||||++||++
T Consensus 104 ~q~~~l~~~-tv~enl~~~~~~----~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~-~~~~~~LSgGq~qrv~lAra 173 (282)
T cd03291 104 SQFSWIMPG-TIKENIIFGVSY----DE----YRYKSVVKACQLEEDITKFPEKDNTVL-GEGGITLSGGQRARISLARA 173 (282)
T ss_pred eCccccccc-CHHHHhhccccc----CH----HHHHHHHHHhCCHHHHHhcccccccee-cCCCCcCCHHHHHHHHHHHH
Confidence 999988885 999999864321 11 123344555555443322 11 23467999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDML-KVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L-~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
|+.+|++++|||||+|||+.++..+.+.+ ++++ + +.|||++||+++. + ..+|++++|++|++++.|+++++.
T Consensus 174 L~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 174 VYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCChHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999865 5554 3 7999999999974 4 689999999999999999988764
No 313
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.6e-38 Score=321.22 Aligned_cols=190 Identities=24% Similarity=0.311 Sum_probs=158.9
Q ss_pred eeeceEEEEe-----cCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHH
Q 006505 60 VLDGVSCKAK-----PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVE 134 (643)
Q Consensus 60 iL~~vs~~i~-----~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 134 (643)
.++|++++++ +||+++|+||||||||||+++|+|+.+|++|+|.++|+ .++|++|+....+.+||+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---------~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---------TVSYKPQYIKADYEGTVR 79 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---------eEEEecccccCCCCCCHH
Confidence 5566666665 79999999999999999999999999999999999985 589999998777778999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 006505 135 ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST 214 (643)
Q Consensus 135 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 214 (643)
|++.+...... . ..+..+++++.+++.+..+ +.+.+|||||||||+||++|+.+|++++|||||++||+.
T Consensus 80 e~l~~~~~~~~--~---~~~~~~~~l~~l~l~~~~~-----~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~ 149 (246)
T cd03237 80 DLLSSITKDFY--T---HPYFKTEIAKPLQIEQILD-----REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE 149 (246)
T ss_pred HHHHHHhhhcc--c---cHHHHHHHHHHcCCHHHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 99976433111 1 1234678899999987664 466799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE--EecChhHH
Q 006505 215 SALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL--HHGTVDLL 269 (643)
Q Consensus 215 ~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~~ 269 (643)
++..+.+.|++++++.|+|||++||+++ .+..++|++++|+++..+ ..+++.++
T Consensus 150 ~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 150 QRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9999999999998766899999999997 477899999999764333 33455443
No 314
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.8e-39 Score=396.69 Aligned_cols=215 Identities=26% Similarity=0.393 Sum_probs=184.7
Q ss_pred hhccccccccc---ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-------------------------
Q 006505 46 SKLEEAADSDG---VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP------------------------- 97 (643)
Q Consensus 46 ~~~~~~~~~~~---~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~------------------------- 97 (643)
+++++++.+|. ++++|+|+|++++||+.+||+||||||||||+++|.|+++|
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccc
Confidence 67889999995 35799999999999999999999999999999999999998
Q ss_pred -----------------------------CccEEEECCCcCCc---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 006505 98 -----------------------------QSGSTFVNGSPIDK---AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRL 145 (643)
Q Consensus 98 -----------------------------~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~ 145 (643)
++|+|++||.++.. ..+|+.+|||+|++.+|+. |++|||.++..
T Consensus 1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~--- 1321 (1466)
T PTZ00265 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE--- 1321 (1466)
T ss_pred cccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC---
Confidence 59999999998743 6789999999999999986 99999998621
Q ss_pred CCCHHHHHHHHHHHHHHcCChh-------hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 006505 146 RLPQAQLRARVKSLVKELGLEH-------VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQ 218 (643)
Q Consensus 146 ~~~~~~~~~~v~~~l~~lgl~~-------~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~ 218 (643)
..+. +.++++++..++.+ -.||.+| +....||||||||++|||||+++|+|||||||||+||+.+...
T Consensus 1322 ~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VG-e~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~ 1396 (1466)
T PTZ00265 1322 DATR----EDVKRACKFAAIDEFIESLPNKYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396 (1466)
T ss_pred CCCH----HHHHHHHHHcCCHHHHHhCccccCCccC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 1122 34666666666543 3477786 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC----CeEE-EecChhHHHH
Q 006505 219 IIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN----GSVL-HHGTVDLLSV 271 (643)
Q Consensus 219 i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~----G~iv-~~G~~~~~~~ 271 (643)
|.+.|+++++..++|+|+++|+++ ..+.||+|++|++ |+++ +.|+++++.+
T Consensus 1397 I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999986334899999999985 4678999999999 9955 8999998863
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3e-38 Score=358.66 Aligned_cols=208 Identities=26% Similarity=0.340 Sum_probs=178.0
Q ss_pred hhhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 44 ELSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 44 ~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++. ..+|||+
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--------~~i~~v~ 76 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--------IKVGYLP 76 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--------CEEEEEe
Confidence 4678999999998 789999999999999999999999999999999999999999999999752 3599999
Q ss_pred cCCCCCCCCCHHHHHHHHHH-hc------------CCCCH----------------------HHHHHHHHHHHHHcCChh
Q 006505 123 QRDTLFPLLTVEETLMFSAK-LR------------LRLPQ----------------------AQLRARVKSLVKELGLEH 167 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~-~~------------~~~~~----------------------~~~~~~v~~~l~~lgl~~ 167 (643)
|++.+++.+||.||+.++.. .+ ..... .+.+++++++++.+|+..
T Consensus 77 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 156 (556)
T PRK11819 77 QEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP 156 (556)
T ss_pred cCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc
Confidence 99999999999999987531 00 00000 012456788999999953
Q ss_pred hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 168 VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 168 ~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
. ++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||++ .+.+
T Consensus 157 -~-----~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~-~~~~ 225 (556)
T PRK11819 157 -W-----DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRY-FLDN 225 (556)
T ss_pred -c-----cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHH-HHHh
Confidence 3 4467899999999999999999999999999999999999999999999876 249999999997 4888
Q ss_pred hcCEEEEEeCCeEE-EecChhHHH
Q 006505 248 MFNSILMLANGSVL-HHGTVDLLS 270 (643)
Q Consensus 248 ~~D~v~~L~~G~iv-~~G~~~~~~ 270 (643)
.+|+|++|++|+++ +.|+.++..
T Consensus 226 ~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 226 VAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred hcCeEEEEeCCEEEEecCCHHHHH
Confidence 99999999999986 888877643
No 316
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.8e-38 Score=303.12 Aligned_cols=161 Identities=35% Similarity=0.462 Sum_probs=144.1
Q ss_pred hccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 47 KLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
++++++++|+ .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|. +.++|++|++
T Consensus 2 ~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--------~~i~~~~q~~ 73 (166)
T cd03223 2 ELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--------EDLLFLPQRP 73 (166)
T ss_pred EEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--------ceEEEECCCC
Confidence 3677888885 467999999999999999999999999999999999999999999999873 5699999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.++ ..|++||+.+. .+..||||||||++||++|+.+|++++||
T Consensus 74 ~~~-~~tv~~nl~~~------------------------------------~~~~LS~G~~~rv~laral~~~p~~lllD 116 (166)
T cd03223 74 YLP-LGTLREQLIYP------------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLD 116 (166)
T ss_pred ccc-cccHHHHhhcc------------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 765 56999998642 13589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG 258 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 258 (643)
|||+|||+.++..+.+.|+++ ++|+|++||+++ ..+.+|++++|++|
T Consensus 117 EPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 117 EATSALDEESEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred CCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 999999999999999999875 589999999986 35799999999875
No 317
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=9.5e-39 Score=361.32 Aligned_cols=185 Identities=30% Similarity=0.475 Sum_probs=161.1
Q ss_pred hhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC--chhhcccEEEEc
Q 006505 46 SKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID--KAQFRKVSGYVT 122 (643)
Q Consensus 46 ~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~--~~~~~~~i~yv~ 122 (643)
++++|++.+|++ +++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++. ...+|+.++|||
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~ 414 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFA 414 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEc
Confidence 678999999965 56999999999999999999999999999999999999999999999998765 356788999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
|++.+|+. |++|||.++. +. ..++++.++++..++++. .||.+|+ ....||||||||++|||||
T Consensus 415 Q~~~lF~~-TI~eNI~~g~----~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 415 QDAHLFDT-TVRDNLRLGR----PD---ATDEELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARAL 485 (529)
T ss_pred cCcccccc-cHHHHHhccC----CC---CCHHHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHH
Confidence 99999997 9999998752 11 123456778888777643 3677764 5568999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQP 241 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~ 241 (643)
+++|++|+||||||+||+.+...+.+.|+++. .++|+|+++|++
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 99999999999999999999999999999874 379999999985
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-38 Score=356.42 Aligned_cols=203 Identities=24% Similarity=0.321 Sum_probs=177.0
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEcc
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q 123 (643)
+++++++++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+ +.+||++|
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--------~~i~~~~q 389 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--------ANIGYYAQ 389 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--------eEEEEEcc
Confidence 4688999999999889999999999999999999999999999999999999999999999873 45999999
Q ss_pred CCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 124 RDT--LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 124 ~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
++. +++.+|++|++.+... . ...+++++++++.+|+. +.. +.++.+||||||||++||++|+.+|+
T Consensus 390 ~~~~~~~~~~t~~~~~~~~~~---~---~~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGq~qrv~la~al~~~p~ 458 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQWRQ---E---GDDEQAVRGTLGRLLFSQDDI-----KKSVKVLSGGEKGRMLFGKLMMQKPN 458 (530)
T ss_pred cccccCCCCCcHHHHHHHhcc---C---CccHHHHHHHHHHcCCChhHh-----cCcccccCHHHHHHHHHHHHHhcCCC
Confidence 864 5667999999864211 1 11235688999999994 444 45778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE-EecChhHHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL-HHGTVDLLS 270 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 270 (643)
+|||||||+|||+.++..+.+.|+++ +.|||++|||++ .+.++||++++|++|+++ +.|++++..
T Consensus 459 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 459 VLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 99999999999999999999999875 359999999997 588899999999999998 889887654
No 319
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.1e-38 Score=358.24 Aligned_cols=203 Identities=21% Similarity=0.312 Sum_probs=173.9
Q ss_pred hhhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEE
Q 006505 45 LSKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~y 120 (643)
.++++|++.+|++ +++|+|+|+++++||.+||+||||||||||+++|+|+++|++|+|.+||+++.. ..+++.++|
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 3678999999964 569999999999999999999999999999999999999999999999998753 467889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCC--cCCCCCHHHHHHHHHHHHHhcC
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDD--RVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~--~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|+|++.+|+. |++|| . + +..++.+++.++.+++.+..+. ++. ....||||||||++||||++++
T Consensus 402 v~q~~~lf~~-ti~~n---~-----~---~~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~ 467 (547)
T PRK10522 402 VFTDFHLFDQ-LLGPE---G-----K---PANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEE 467 (547)
T ss_pred EecChhHHHH-hhccc---c-----C---chHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999998886 88887 1 1 1223467788999998764432 222 2468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 263 (643)
|++|+||||||+||+.++..+.+.|.+..++.|+|+|+++|+++ ..+.+|++++|++|++++.
T Consensus 468 ~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 468 RDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998765435899999999985 5688999999999999876
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.2e-38 Score=356.61 Aligned_cols=208 Identities=27% Similarity=0.340 Sum_probs=174.9
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEcc
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q 123 (643)
+++++|++++|+ .+++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.+++. ..+|||+|
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--------~~i~~v~Q 75 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG--------IKVGYLPQ 75 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--------CEEEEEec
Confidence 567899999997 788999999999999999999999999999999999999999999999752 45999999
Q ss_pred CCCCCCCCCHHHHHHHHHHh-c------------CCCCHHH----------------------HHHHHHHHHHHcCChhh
Q 006505 124 RDTLFPLLTVEETLMFSAKL-R------------LRLPQAQ----------------------LRARVKSLVKELGLEHV 168 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~-~------------~~~~~~~----------------------~~~~v~~~l~~lgl~~~ 168 (643)
++.+++.+||+||+.++... + ...+.++ ..++++++++.+|+..
T Consensus 76 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~- 154 (552)
T TIGR03719 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP- 154 (552)
T ss_pred cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-
Confidence 99999999999999875321 0 0001010 1234566777777742
Q ss_pred hhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 006505 169 AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM 248 (643)
Q Consensus 169 ~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~ 248 (643)
. +.++..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++|||++ .+..+
T Consensus 155 ~-----~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~-~~~~~ 224 (552)
T TIGR03719 155 W-----DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRY-FLDNV 224 (552)
T ss_pred c-----cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHH-HHHhh
Confidence 2 4567899999999999999999999999999999999999999999999865 359999999997 48889
Q ss_pred cCEEEEEeCCeEE-EecChhHHHH
Q 006505 249 FNSILMLANGSVL-HHGTVDLLSV 271 (643)
Q Consensus 249 ~D~v~~L~~G~iv-~~G~~~~~~~ 271 (643)
+|++++|++|+++ +.|+.++..+
T Consensus 225 ~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 225 AGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred cCeEEEEECCEEEEecCCHHHHHH
Confidence 9999999999976 7898876543
No 321
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-38 Score=315.70 Aligned_cols=187 Identities=29% Similarity=0.439 Sum_probs=165.6
Q ss_pred hhhcccccccccc---------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhc
Q 006505 45 LSKLEEAADSDGV---------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFR 115 (643)
Q Consensus 45 ~~~~~~~~~~~~~---------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~ 115 (643)
+++++|+.+.|.. ..+++||||++++||.++|+|.||||||||-|+|.|+.+|++|+|+++|+++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3456666655532 37999999999999999999999999999999999999999999999999864321
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 116 KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 116 ~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
+++..+++.++|+.+|+.... .+++++++|||||||++|||||
T Consensus 82 ---------------------------------~~~~~~~v~elL~~Vgl~~~~----~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 82 ---------------------------------KEERRERVLELLEKVGLPEEF----LYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred ---------------------------------hhHHHHHHHHHHHHhCCCHHH----hhcCCcccCchhhhhHHHHHHH
Confidence 344567899999999986421 2568999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+.+|+++++|||||.||...+.++.++|+++.++.|.|.++++||.+. +..++|||.+|..|++++.|+.+++..
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEecCceeEecCHHHHhh
Confidence 999999999999999999999999999999999999999999999984 888999999999999999999998853
No 322
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.1e-38 Score=358.51 Aligned_cols=198 Identities=31% Similarity=0.511 Sum_probs=170.5
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|++ +++|+|+|++++|||.++|+||||||||||+|+|+|+++|++|+|.+||.++.+ ..+|+.++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 3678999999965 469999999999999999999999999999999999999999999999998743 56789999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||+|++.+|+. |++||+.++.. ..+ ++++.+.++..++.+. .||.+|+ ....||||||||++||
T Consensus 400 ~v~Q~~~lf~~-ti~~Ni~~~~~---~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~la 470 (529)
T TIGR02857 400 WVPQHPFLFAG-TIAENIRLARP---DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALA 470 (529)
T ss_pred EEcCCCcccCc-CHHHHHhccCC---CCC----HHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHH
Confidence 99999999986 99999987531 112 2456677777777543 3556643 5678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
|||+++|++++||||||+||+.++..+.+.|+++. .++|+|+++|+++ ..+.+|+|++|
T Consensus 471 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 99999999999999999999999999999999885 3899999999985 45789999875
No 323
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.5e-38 Score=391.10 Aligned_cols=213 Identities=24% Similarity=0.313 Sum_probs=184.6
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|+. +++|+|+|++|+|||.+||+||||||||||+++|.|+++|++|+|.+||.++.. ..+|++++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 3678999999953 579999999999999999999999999999999999999999999999998753 67899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
|||||+.+|+. |++|||.+.. ..+ ++++.++++..++.+. .|+.+| +....||||||||++||
T Consensus 1314 iVpQdp~LF~g-TIr~NL~~~~----~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~-e~G~~LSgGQrQrlaLA 1383 (1495)
T PLN03232 1314 IIPQSPVLFSG-TVRFNIDPFS----EHN----DADLWEALERAHIKDVIDRNPFGLDAEVS-EGGENFSVGQRQLLSLA 1383 (1495)
T ss_pred EECCCCeeeCc-cHHHHcCCCC----CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceec-CCCCCCCHHHHHHHHHH
Confidence 99999999997 9999997531 112 3456677777776543 245554 35678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|+||+||||||+||+.+...+.+.|++.. .++|+|+++|+++. ...+|+|++|++|++++.|+++++.+
T Consensus 1384 RALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~t--i~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1384 RALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNT--IIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999875 38999999999963 45699999999999999999999863
No 324
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.2e-38 Score=390.00 Aligned_cols=213 Identities=28% Similarity=0.346 Sum_probs=185.0
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|.+ +++|+|+|++|+|||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ..+|++++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 3678999999964 479999999999999999999999999999999999999999999999998854 67899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
+||||+.+|.. |++|||.... ..+ ++++.++++..++.+. .|+.+| +....||||||||++||
T Consensus 1317 iVpQdp~LF~G-TIreNLd~~~----~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vg-e~G~nLSgGQrQrlaLA 1386 (1622)
T PLN03130 1317 IIPQAPVLFSG-TVRFNLDPFN----EHN----DADLWESLERAHLKDVIRRNSLGLDAEVS-EAGENFSVGQRQLLSLA 1386 (1622)
T ss_pred EECCCCccccc-cHHHHhCcCC----CCC----HHHHHHHHHHcCcHHHHHhCccccCcccc-CCCCCCCHHHHHHHHHH
Confidence 99999999998 9999997532 112 3456677777766543 355554 35668999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+++|+++. ...+|+|++|++|++++.|+++++.+
T Consensus 1387 RALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~t--I~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1387 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT--IIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHH--HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999875 38999999999973 45699999999999999999999864
No 325
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9.5e-38 Score=322.73 Aligned_cols=225 Identities=30% Similarity=0.453 Sum_probs=201.8
Q ss_pred hhhhhccccccccc----ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-----ccEEEECCCcCC---
Q 006505 43 EELSKLEEAADSDG----VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-----SGSTFVNGSPID--- 110 (643)
Q Consensus 43 ~~~~~~~~~~~~~~----~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-----~G~I~~~g~~~~--- 110 (643)
.++++++|++..++ ...++++|||++++||.+||+|.||||||-..+.+.|+++.. +|+|.|+|+++-
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 35678889988886 788999999999999999999999999999999999998752 899999999872
Q ss_pred chhh---c-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHH
Q 006505 111 KAQF---R-KVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGG 184 (643)
Q Consensus 111 ~~~~---~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGG 184 (643)
+.+. | .+|++++|++ .|.|-.|+.+.+.-..++..+.++++.++++.++|+.+|+.+..... +.+|.+||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGG 161 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSGG 161 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcc
Confidence 2333 2 4699999997 57888899999988888877778888999999999999998755332 7799999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 185 ERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 185 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|||||.||.||+++|++|+.||||++||...+.+|+++|+++.++.|..++++|||++. +.+++|||+||.+|++++.|
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVMQHGEIVETG 240 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEEEeccEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999985 88899999999999999999
Q ss_pred ChhHHH
Q 006505 265 TVDLLS 270 (643)
Q Consensus 265 ~~~~~~ 270 (643)
+.+++.
T Consensus 241 ~t~~lF 246 (534)
T COG4172 241 TTETLF 246 (534)
T ss_pred cHHHHh
Confidence 988875
No 326
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.7e-38 Score=333.81 Aligned_cols=221 Identities=28% Similarity=0.459 Sum_probs=185.6
Q ss_pred hhhhccccccc--ccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccE
Q 006505 44 ELSKLEEAADS--DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVS 118 (643)
Q Consensus 44 ~~~~~~~~~~~--~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i 118 (643)
..+.++++..- -.++++|+|+||++.+||.++|+||||||||||.|+|.|..+|.+|.|.+||-+++. +++-++|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 34567776533 345789999999999999999999999999999999999999999999999998843 6678899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQ-----LRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~-----~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
||.|||-.||+. ||.|||. ++....+.+. +...+.+++- .+.+-.||.+|+ ....||||||||+++||
T Consensus 413 GYLPQdVeLF~G-TIaeNIa---Rf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~-~G~~LSgGQRQRIaLAR 485 (580)
T COG4618 413 GYLPQDVELFDG-TIAENIA---RFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGE-GGATLSGGQRQRIALAR 485 (580)
T ss_pred CcCcccceecCC-cHHHHHH---hccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCC-CCCCCCchHHHHHHHHH
Confidence 999999999998 9999996 3221112111 1122444443 344556888875 45789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSL 273 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 273 (643)
||-.+|.+++||||-|+||......+.+.|.+++++ |.|+|+++|.|+ +...+|+|++|++|++-.+|+.+|+...+
T Consensus 486 AlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r-G~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc-CCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 999999999999999999999999999999999874 999999999996 68999999999999999999999998775
Q ss_pred H
Q 006505 274 R 274 (643)
Q Consensus 274 ~ 274 (643)
.
T Consensus 563 ~ 563 (580)
T COG4618 563 L 563 (580)
T ss_pred c
Confidence 4
No 327
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-38 Score=309.38 Aligned_cols=217 Identities=31% Similarity=0.471 Sum_probs=188.4
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccE
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVS 118 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i 118 (643)
.++++++|++.+|++|+||+|+|++|+|||-.+|+|||||||||||++++|..+|++|.+.+.|+...+ .+.|++|
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred cceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 357899999999999999999999999999999999999999999999999999999999999998743 4679999
Q ss_pred EEEccC--CCCCCCCCHHHHHHHHHH--h-cCC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 119 GYVTQR--DTLFPLLTVEETLMFSAK--L-RLR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 119 ~yv~Q~--~~l~~~lTv~E~l~~~~~--~-~~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
|+|.-. ..+.+..+|+|-+.-+.. . ... ...++..+++..+++.+|+.+.+|+ +...||-||||||-||
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r-----~~~~LS~Ge~rrvLia 183 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR-----PFGSLSQGEQRRVLIA 183 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccC-----chhhcCHhHHHHHHHH
Confidence 999844 344566788887753321 1 111 2345667889999999999998854 5679999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAET-RGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
|||+.+|.+||||||++|||...+..+.+.|.+++.. .+.++|++||.++ |+...+++++++++|+++++|.
T Consensus 184 RALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 184 RALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999863 3678999999998 6999999999999999999874
No 328
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.7e-38 Score=363.93 Aligned_cols=213 Identities=31% Similarity=0.482 Sum_probs=185.3
Q ss_pred hhccccccccccc---ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 46 SKLEEAADSDGVR---RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 46 ~~~~~~~~~~~~~---~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
+..+|+...|..+ +||+|+|+++++|+-+||+|||||||||...+|-..++|++|.|.+||+++.. +.+|+++|
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc
Confidence 4577887777654 59999999999999999999999999999999999999999999999999854 56799999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-------CChhhhhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKEL-------GLEHVAMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-------gl~~~~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
.|.|+|.||.. |++|||.|+. .+ .+.++ +.+.++.- +|.+-.||.+|+ +..+||||||||++||
T Consensus 1068 lVsQEP~LF~~-TIrENI~YG~-~~--vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGe-rG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1068 LVSQEPVLFNG-TIRENIAYGS-EE--VSEEE----IIEAAKLANAHNFISSLPQGYDTRVGE-RGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred eeccCchhhcc-cHHHHHhccC-CC--CCHHH----HHHHHHHhhhHHHHhcCcCcccCccCc-ccCcCCchHHHHHHHH
Confidence 99999999997 9999999982 11 23333 23333322 456667898975 5568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
||+++||+||||||.||+||+++.+.+.+.|.+.. .|+|.|++.|.++ ..+.+|.|.|+++|++++.|+.+++..
T Consensus 1139 RAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1139 RAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999999999999999999999999986 3899999999997 468899999999999999999999875
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.1e-37 Score=354.01 Aligned_cols=204 Identities=19% Similarity=0.312 Sum_probs=172.7
Q ss_pred hhccccccccccc-----ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhccc
Q 006505 46 SKLEEAADSDGVR-----RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKV 117 (643)
Q Consensus 46 ~~~~~~~~~~~~~-----~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~ 117 (643)
++++|++.+|+++ ++|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+++.
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 417 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh
Confidence 6688999999752 59999999999999999999999999999999999999999999999998854 467889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhc-CCCcCCCCCHHHHHHHHHHHHHh
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARV-GDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~v-g~~~~~~LSGGerqRv~ia~aL~ 196 (643)
++||+|++.+|.. |++||+. + +..+++++++++.+++.+..+... |-+....||||||||++||||++
T Consensus 418 i~~v~q~~~lf~~-ti~~n~~-------~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall 486 (555)
T TIGR01194 418 FSAIFADFHLFDD-LIGPDEG-------E---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWL 486 (555)
T ss_pred CcEEccChhhhhh-hhhcccc-------c---chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999886 8888841 1 123456788999999876543321 22234679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLK-VMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~-~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 263 (643)
.+|++++|||||++||+.+...+.+.+. .++. .|+|+|+++|+++ ..+.+|+|++|++|++++.
T Consensus 487 ~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 487 EDRPILLFDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998664 4544 4899999999985 4689999999999999753
No 330
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.1e-38 Score=384.52 Aligned_cols=210 Identities=24% Similarity=0.379 Sum_probs=175.6
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEEC-CCcCCc---hhhccc
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVN-GSPIDK---AQFRKV 117 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~-g~~~~~---~~~~~~ 117 (643)
.++++|++++|+. +++|+|+|+++++||++||+||||||||||+++|+|+++|++|+|++| |.++.. ..+|+.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 3678999999975 369999999999999999999999999999999999999999999994 676632 457889
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcC---------CC-----------------------------------------
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRL---------RL----------------------------------------- 147 (643)
Q Consensus 118 i~yv~Q~~~l~~~lTv~E~l~~~~~~~~---------~~----------------------------------------- 147 (643)
+|||+|++.+|+. |++|||.++..... ..
T Consensus 462 Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 462 IGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred ccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 9999999999985 99999998631000 00
Q ss_pred CHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 006505 148 PQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220 (643)
Q Consensus 148 ~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~ 220 (643)
..+..++++.++++.+++.+.. ||.+| +.+..||||||||++|||||+.+|+|||||||||+||+.++..+.
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg-~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~ 619 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ 619 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 0011235677888888876543 45554 457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC
Q 006505 221 DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG 258 (643)
Q Consensus 221 ~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 258 (643)
+.|++++++.|+|+|+++|+++. + +.||+|++|++|
T Consensus 620 ~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 620 KTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 99999976458999999999963 4 789999999986
No 331
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2e-37 Score=317.86 Aligned_cols=200 Identities=29% Similarity=0.395 Sum_probs=167.9
Q ss_pred cccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEE-----------ECCCcCCch--h-
Q 006505 49 EEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF-----------VNGSPIDKA--Q- 113 (643)
Q Consensus 49 ~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~-----------~~g~~~~~~--~- 113 (643)
.+++++|+.+ .+|+|+| .+++||+++|+||||||||||||+|+|+++|++|+|. ++|+++... .
T Consensus 4 ~~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 3567888765 5999999 5999999999999999999999999999999999996 888876431 1
Q ss_pred hc--ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHH
Q 006505 114 FR--KVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSI 191 (643)
Q Consensus 114 ~~--~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~i 191 (643)
.+ ..++|++|+..+++. ++.+++.+.. + ....++.+.++++.+|+++.. ++.+..||||||||++|
T Consensus 83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--~----~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPK-AVKGKVGELL--K----KKDERGKLDELVDQLELRHVL-----DRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhcccceeeecchhccCch-HHHHHHHHHh--c----hhHHHHHHHHHHHHcCCchhh-----cCChhhCCHHHHHHHHH
Confidence 11 247899999888885 8888887642 1 223456788999999998765 34677999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 192 GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 192 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
|++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|+ |++.+.|
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999999874 899999999997 4777999999995 6565544
No 332
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.7e-37 Score=350.88 Aligned_cols=205 Identities=26% Similarity=0.383 Sum_probs=173.9
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
.+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.+++ + ..+||++
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-------~~i~~v~ 393 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-------VKLAYVD 393 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c-------eEEEEEe
Confidence 3478899999999988999999999999999999999999999999999999999999999954 2 1499999
Q ss_pred cCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 123 QRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 123 Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
|+. .+++.+||.||+.+...... ...+ ...++++++.+|+.+ .. ++++.+|||||||||+||++|+.+|+
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~la~al~~~p~ 465 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIK-VGNR--EIPSRAYVGRFNFKGGDQ-----QKKVGVLSGGERNRLHLAKTLKQGGN 465 (556)
T ss_pred CchhhcCCCCCHHHHHHhhccccc-cccc--HHHHHHHHHhCCCChhHh-----cCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 996 78889999999988643221 1111 223557899999963 34 44678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-CeEE-EecChhH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-GSVL-HHGTVDL 268 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~~ 268 (643)
+|||||||+|||+.++..+.+.|+++. | |||++|||++ .+.++||++++|++ |++. +.|+.++
T Consensus 466 lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 466 VLLLDEPTNDLDVETLRALEEALLEFP---G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 999999999999999999999999862 4 8999999997 58899999999986 7776 5666544
No 333
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.5e-37 Score=385.31 Aligned_cols=213 Identities=25% Similarity=0.301 Sum_probs=185.5
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
-++++|++.+|.+ +.+|+||||+|+|||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ..+|+.++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 3678999999865 459999999999999999999999999999999999999999999999999854 67899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
|||||+.+|+. |++|||.... ..+ ++++.++++..++.+. .|+.+|+ ....||||||||++||
T Consensus 1388 iVpQdp~LF~g-TIreNIdp~~----~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLA 1457 (1560)
T PTZ00243 1388 MIPQDPVLFDG-TVRQNVDPFL----EAS----SAEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMA 1457 (1560)
T ss_pred EECCCCccccc-cHHHHhCccc----CCC----HHHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHH
Confidence 99999999997 9999996321 112 3467788888887654 3556653 5578999999999999
Q ss_pred HHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHD-PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~-p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++ |+||+||||||+||+.+...+.+.|++.. .++|||+++|+++ ....||+|++|++|++++.|+++++.+
T Consensus 1458 RALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1458 RALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred HHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999996 89999999999999999999999999864 3799999999985 467899999999999999999999863
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.1e-37 Score=350.41 Aligned_cols=200 Identities=27% Similarity=0.340 Sum_probs=175.2
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
.+++++++++++|++. .|+++|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++ ..++|++
T Consensus 338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----------~~i~y~~ 406 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----------LKISYKP 406 (590)
T ss_pred ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----------eeEEEec
Confidence 3567899999999765 5999999999999999999999999999999999999999999986 1489999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
|+..+++.+||+|++.+..... .. ...++++++.+++.+.. ++++.+|||||||||+||++|+.+|++|
T Consensus 407 Q~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~L~~l~l~~~~-----~~~~~~LSGGe~QRvaiAraL~~~p~ll 475 (590)
T PRK13409 407 QYIKPDYDGTVEDLLRSITDDL---GS---SYYKSEIIKPLQLERLL-----DKNVKDLSGGELQRVAIAACLSRDADLY 475 (590)
T ss_pred ccccCCCCCcHHHHHHHHhhhc---Ch---HHHHHHHHHHCCCHHHH-----hCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9988888899999998753211 11 23568899999998766 4577899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
||||||+|||+.++..+.+.|++++++.|+|||++|||++ .+..++|++++|+ |++...|..
T Consensus 476 LLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 476 LLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999999999999999999998866899999999997 4888999999996 577777663
No 335
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.1e-37 Score=384.74 Aligned_cols=213 Identities=21% Similarity=0.229 Sum_probs=184.7
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|.. +++|+|||++|+|||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ..+|++++
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 3678999999965 469999999999999999999999999999999999999999999999999854 57899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
|||||+.+|++ |++|||.... ..+ ++.+.++++..++.+. .|+.+| +....||||||||++||
T Consensus 1364 iVpQdp~LF~g-TIr~NLdp~~----~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~-e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1364 IIPQDPVLFSG-SLRMNLDPFS----QYS----DEEVWWALELAHLKTFVSALPDKLDHECA-EGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred EECCCCcccCc-cHHHHcCccc----CCC----HHHHHHHHHHcCcHHHHhhCccCCCceec-CCCCcCCHHHHHHHHHH
Confidence 99999999998 9999996211 112 2346677777776543 355554 35568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|+||+||||||+||+.+...+.+.|++.. .++|||+++|+++ ....+|+|++|++|++++.|+++++.+
T Consensus 1434 RALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1434 RALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999875 3899999999986 356799999999999999999999864
No 336
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.7e-37 Score=348.74 Aligned_cols=205 Identities=26% Similarity=0.396 Sum_probs=173.3
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
.+++++++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.+++ + ..+||++
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-------~~i~~v~ 391 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-------VKLAYVD 391 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c-------eEEEEEe
Confidence 3568899999999988999999999999999999999999999999999999999999999954 2 1599999
Q ss_pred cCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 123 QRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 123 Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
|++ .+++.+||.|++.++.... ..... +.+++++++.+|+.+ .. ++++.+|||||||||+||++|+.+|+
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~-~~~~~--~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGe~qrv~la~al~~~p~ 463 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDII-QLGKR--EVPSRAYVGRFNFKGSDQ-----QKKVGQLSGGERNRVHLAKTLKSGGN 463 (552)
T ss_pred CCccccCCCCcHHHHHHhhcccc-ccCcc--hHHHHHHHHhCCCChhHh-----cCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 996 4788899999998864322 11111 224567899999963 34 44678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC-CeEE-EecChhH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN-GSVL-HHGTVDL 268 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~~ 268 (643)
+|||||||+|||+.++..+.+.|+++. | |||++|||++ .+.++||++++|++ |+++ +.|+.++
T Consensus 464 lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 464 VLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 999999999999999999999999872 4 8999999997 48889999999986 5776 5566543
No 337
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-38 Score=330.86 Aligned_cols=248 Identities=25% Similarity=0.382 Sum_probs=200.4
Q ss_pred cceeccc---ccccccccccccccCCCcchhh------hhhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCH
Q 006505 15 NYNVYTQ---KKETPFKIFTKNQLNDDHHAQE------ELSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGK 84 (643)
Q Consensus 15 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGK 84 (643)
.|+..++ +-++.++++.++.+..+.+... .-++.+|++..|. +|++|+||||++.||+.+|++||||+||
T Consensus 498 ~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGK 577 (790)
T KOG0056|consen 498 YYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGK 577 (790)
T ss_pred HHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCch
Confidence 4565554 5566666666665544433322 2345678887775 5789999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHH--HHHH
Q 006505 85 SSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRAR--VKSL 159 (643)
Q Consensus 85 STLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~--v~~~ 159 (643)
||++|+|-...+.++|+|.+||+++.. ...|+.||.||||..+|.+ |+..||+|+. ...+.++..+. +..+
T Consensus 578 STimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak---~~AsneevyaAAkAA~I 653 (790)
T KOG0056|consen 578 STIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK---PSASNEEVYAAAKAAQI 653 (790)
T ss_pred hHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC---CCCChHHHHHHHHHhhH
Confidence 999999999999999999999999854 5789999999999999987 9999998862 22233332221 2222
Q ss_pred HH-HcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Q 006505 160 VK-ELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSI 238 (643)
Q Consensus 160 l~-~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~ 238 (643)
-+ .++..+-.+++||.+ .-.|||||||||+|||+++.+|.+++|||.||+||..+.+.|...|.+++. |+|-|++.
T Consensus 654 HdrIl~fPegY~t~VGER-GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvA 730 (790)
T KOG0056|consen 654 HDRILQFPEGYNTRVGER-GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVA 730 (790)
T ss_pred HHHHhcCchhhhhhhhhc-ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe
Confidence 22 246666678889754 457999999999999999999999999999999999999999999999995 89999999
Q ss_pred cCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 239 HQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 239 H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|.++. .-.+|.|+++++|+|++.|..+|+..
T Consensus 731 HRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 731 HRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred eeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 99974 45699999999999999999999864
No 338
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.4e-37 Score=293.20 Aligned_cols=202 Identities=29% Similarity=0.480 Sum_probs=172.4
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchh---hcccEEEEccCC--CCCCC
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQ---FRKVSGYVTQRD--TLFPL 130 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~---~~~~i~yv~Q~~--~l~~~ 130 (643)
..+++|+++|++|.+|+++.|+|.||||||||+|+|+|.+.|++|+|.++|.++++.. ....++-|+||+ ..++.
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 3478999999999999999999999999999999999999999999999999997632 234578899997 46999
Q ss_pred CCHHHHHHHHHHhcCC---CC---HHHHHHHHHHHHHHc--CChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEE
Q 006505 131 LTVEETLMFSAKLRLR---LP---QAQLRARVKSLVKEL--GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVL 202 (643)
Q Consensus 131 lTv~E~l~~~~~~~~~---~~---~~~~~~~v~~~l~~l--gl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~il 202 (643)
||++||+..+.. |.. .+ ....++...+-++.+ ||++..+++ +.-|||||||-++++.|-++.|+||
T Consensus 97 lTieENl~la~~-Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~-----iglLSGGQRQalsL~MAtl~~pkiL 170 (263)
T COG1101 97 LTIEENLALAES-RGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDR-----IGLLSGGQRQALSLLMATLHPPKIL 170 (263)
T ss_pred ccHHHHHHHHHh-cCcccccchhhhHHHHHHHHHHHhhcccchhhhhcCh-----hhhccchHHHHHHHHHHhcCCCcEE
Confidence 999999998754 311 11 223344455556665 567777554 4589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 203 ILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 203 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+|||-|++|||.++..+++.-.++.++.+.|.+|+||.++ ++.++.+|.++|++|+|+.+-
T Consensus 171 LLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 171 LLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999999888999999999998 588999999999999999864
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=347.23 Aligned_cols=204 Identities=25% Similarity=0.424 Sum_probs=175.1
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
.+++.++++++.|+++.+|+|+|++|++||+++|+||||||||||||+|+|+.+|++|+|.+++. ..+||++
T Consensus 310 ~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~igy~~ 381 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------IKLGYFA 381 (638)
T ss_pred CceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--------EEEEEec
Confidence 45788999999999899999999999999999999999999999999999999999999999742 2589999
Q ss_pred cCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 123 QRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 123 Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|+. .+.+..|+.+++.- .. .....+++.++|+.+++.. .. ++++..|||||||||+||++|+.+|
T Consensus 382 Q~~~~~l~~~~~~~~~~~~---~~----~~~~~~~~~~~L~~~~l~~~~~-----~~~~~~LSgGekqRl~La~~l~~~p 449 (638)
T PRK10636 382 QHQLEFLRADESPLQHLAR---LA----PQELEQKLRDYLGGFGFQGDKV-----TEETRRFSGGEKARLVLALIVWQRP 449 (638)
T ss_pred CcchhhCCccchHHHHHHH---hC----chhhHHHHHHHHHHcCCChhHh-----cCchhhCCHHHHHHHHHHHHHhcCC
Confidence 974 35566788887631 11 1223457889999999953 44 3467899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE-EecChhHHHH
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL-HHGTVDLLSV 271 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 271 (643)
++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+.++||++++|++|+++ +.|+.++..+
T Consensus 450 ~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 450 NLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999886 24 9999999997 488899999999999997 8899887643
No 340
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.7e-36 Score=375.61 Aligned_cols=212 Identities=24% Similarity=0.311 Sum_probs=184.2
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
.++++|++.+|.. +++|+|+|++|+|||.+||+|+||||||||+++|.|+++ .+|+|.+||.++.. ..+|++++
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 3678999999964 689999999999999999999999999999999999987 79999999999854 56899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia 192 (643)
||||++.+|+. |++|||.... ..+ ++++.++++..++.+. .|+.+++ ....||||||||++||
T Consensus 1296 ~IpQdp~LF~G-TIR~NLdp~~----~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LA 1365 (1490)
T TIGR01271 1296 VIPQKVFIFSG-TFRKNLDPYE----QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLA 1365 (1490)
T ss_pred EEeCCCccCcc-CHHHHhCccc----CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHH
Confidence 99999999998 9999996321 112 3567788888887643 3555543 4567999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++|+||+||||||+||+.+...+.+.|++.. .++|||+++|.++ ....+|+|++|++|++++.|+++++.+
T Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1366 RSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999875 3799999999986 456699999999999999999998863
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.5e-36 Score=292.50 Aligned_cols=155 Identities=25% Similarity=0.369 Sum_probs=138.9
Q ss_pred ccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCC
Q 006505 49 EEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLF 128 (643)
Q Consensus 49 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~ 128 (643)
.|++++|+++.+++++ +++++||+++|+||||||||||+|+|+|+.+|++|+|.++|++ ++|++|+..
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---------i~~~~q~~~-- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---------PVYKPQYID-- 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---------EEEEcccCC--
Confidence 4678899999999985 8999999999999999999999999999999999999999853 788888532
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 006505 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208 (643)
Q Consensus 129 ~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPt 208 (643)
||||||||++||++|+.+|++++|||||
T Consensus 72 ----------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 72 ----------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred ----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe--cChhH
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH--GTVDL 268 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~--G~~~~ 268 (643)
+|||+.++..+.+.+++++++.+.|||++||+++ .+.+++|++++|+++..++. |+|..
T Consensus 100 s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 100 AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCcc
Confidence 9999999999999999998753499999999997 47789999999998766655 66543
No 342
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=359.02 Aligned_cols=223 Identities=30% Similarity=0.520 Sum_probs=205.2
Q ss_pred hhhhcccccccccccc-eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccE
Q 006505 44 ELSKLEEAADSDGVRR-VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVS 118 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~-iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i 118 (643)
..+.++++.+.|+.+. +++++|+.|++||+.+++|+|||||||++|+|.|..+|++|++.++|.++.. .+.++.+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4556788889998887 9999999999999999999999999999999999999999999999998853 2478899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
||+||+|.+++.+|.+|++.+.++++ +.+.++.++.++.+++.+||.+.+++ .++.+|||+|||+++|.|++.+
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlr-G~~~~di~~~v~~ll~~~~L~~~~~~-----~~~~ySgG~kRkLs~aialig~ 716 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLR-GLPRSDIGSAIEKLLRLVGLGPYANK-----QVRTYSGGNKRRLSFAIALIGD 716 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHc-CCChhHHHHHHHHHHHHcCChhhhcc-----chhhCCCcchhhHHHHHHHhcC
Confidence 99999999999999999999999987 44566777889999999999998866 5679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLR 274 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 274 (643)
|++++|||||+|+||.+++.++++++++.+. |+.||+|||.++ |+..+|||+.+|.+|++...|+++++...|.
T Consensus 717 p~vi~LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 717 PSVILLDEPSTGLDPKARRHLWDIIARLRKN-GKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 9999999999999999999999999999874 779999999998 7999999999999999999999999987664
No 343
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.7e-36 Score=282.55 Aligned_cols=143 Identities=34% Similarity=0.532 Sum_probs=133.4
Q ss_pred hcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCC
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDT 126 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~ 126 (643)
+++++.++|+++.+++++|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+ +.++|++|
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--------~~i~~~~~--- 70 (144)
T cd03221 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--------VKIGYFEQ--- 70 (144)
T ss_pred EEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--------EEEEEEcc---
Confidence 4678888888778999999999999999999999999999999999999999999999984 46899998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 006505 127 LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDE 206 (643)
Q Consensus 127 l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDE 206 (643)
||+|||||++|||+|+.+|+++++||
T Consensus 71 ------------------------------------------------------lS~G~~~rv~laral~~~p~illlDE 96 (144)
T cd03221 71 ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDE 96 (144)
T ss_pred ------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 207 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
||+|||+.++..+.+.|+++ ++|+|++||+++ ++.+++|++++|++|+
T Consensus 97 P~~~LD~~~~~~l~~~l~~~----~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 97 PTNHLDLESIEALEEALKEY----PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred CccCCCHHHHHHHHHHHHHc----CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999875 479999999997 5788999999999986
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6e-36 Score=344.58 Aligned_cols=206 Identities=23% Similarity=0.356 Sum_probs=174.2
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
.++++++|++++|+++++|+|+|++|++|++++|+||||||||||||+|+|+.+|++|+|.+ |.++ .+||++
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-------~i~y~~ 388 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-------EVAYFD 388 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-------EEEEEe
Confidence 45788999999999889999999999999999999999999999999999999999999999 5432 489999
Q ss_pred cCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCC
Q 006505 123 QRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPK 200 (643)
Q Consensus 123 Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ 200 (643)
|+. .+++.+||.|++.+.... .... ...+++.++++.+++. +.. +.+++.|||||||||+||++|+.+|+
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~-~~~~--~~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGekqRl~la~al~~~p~ 460 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQE-VMVN--GRPRHVLGYLQDFLFHPKRA-----MTPVKALSGGERNRLLLARLFLKPSN 460 (635)
T ss_pred CcccccCCCCCHHHHHHhhccc-cccc--chHHHHHHHHHhcCCCHHHH-----hChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 985 588999999999875321 1111 1234678899999985 344 34667999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe-CCeEEE-ecChhHH
Q 006505 201 VLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA-NGSVLH-HGTVDLL 269 (643)
Q Consensus 201 illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~-~G~~~~~ 269 (643)
+|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+.++||++++|+ +|++.. .|+.++-
T Consensus 461 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 461 LLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999775 459999999987 4788999999998 798764 5665543
No 345
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.9e-35 Score=276.59 Aligned_cols=221 Identities=25% Similarity=0.396 Sum_probs=195.5
Q ss_pred hhhcccccccccc---------cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch---
Q 006505 45 LSKLEEAADSDGV---------RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA--- 112 (643)
Q Consensus 45 ~~~~~~~~~~~~~---------~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~--- 112 (643)
+++++|++|.+.. ..+++.|||++++|+-+||+|.||||||||.|+|+|..+|++|+|.+||+++.-.
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 4567777777643 3588999999999999999999999999999999999999999999999998432
Q ss_pred hhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHH
Q 006505 113 QFRKVSGYVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVS 190 (643)
Q Consensus 113 ~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ 190 (643)
...++|-+++||+ .+.|.+.+.+-+..+.++......+++.+++.+.|+.+||-+.. + +-++..||-||||||+
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdh-a---n~~~~~la~~QKQRVa 159 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDH-A---NYYPHMLAPGQKQRVA 159 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccc-c---ccchhhcCchhHHHHH
Confidence 2346799999996 47888999999998888776667777888999999999985422 1 4478899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 191 IGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+||||+-+|+|++.||...+||...+.++.++.-++.++.|.+-|.++.+... +..++|+|+||++|++++.|++.++.
T Consensus 160 LARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~-iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 160 LARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGM-IKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhH-hhhhcccEEEEecCceeecCChhhhh
Confidence 99999999999999999999999999999999999999999999999999984 88899999999999999999998875
No 346
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=341.16 Aligned_cols=205 Identities=25% Similarity=0.387 Sum_probs=166.3
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+.++|++++|+++.+|+||||+|++||+++|+||||||||||||+|+|..+|++|+|.++|.. .++|++|++
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~--------~i~~~~q~~ 73 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW--------QLAWVNQET 73 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--------EEEEEecCC
Confidence 568899999999999999999999999999999999999999999999999999999998742 378888864
Q ss_pred CCCCCCCHHHHHHHHH-----------------------HhcC---CCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcC
Q 006505 126 TLFPLLTVEETLMFSA-----------------------KLRL---RLPQAQLRARVKSLVKELGLE-HVAMARVGDDRV 178 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~-----------------------~~~~---~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~ 178 (643)
..+. .|+.+.+.-.. .+.. .....+.+++++++++.+|+. +.. ++++
T Consensus 74 ~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~-----~~~~ 147 (638)
T PRK10636 74 PALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQL-----ERPV 147 (638)
T ss_pred CCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhh-----cCch
Confidence 3332 45555432110 0000 000112345788999999996 444 4467
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC
Q 006505 179 RGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG 258 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 258 (643)
..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+.++||++++|++|
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~-~l~~~~d~i~~L~~G 222 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRD-FLDPIVDKIIHIEQQ 222 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 799999999999999999999999999999999999999999998764 569999999997 488899999999999
Q ss_pred eEE-EecChhHH
Q 006505 259 SVL-HHGTVDLL 269 (643)
Q Consensus 259 ~iv-~~G~~~~~ 269 (643)
++. |.|+.+..
T Consensus 223 ~i~~~~g~~~~~ 234 (638)
T PRK10636 223 SLFEYTGNYSSF 234 (638)
T ss_pred EEEEecCCHHHH
Confidence 986 67776543
No 347
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.8e-35 Score=340.18 Aligned_cols=206 Identities=21% Similarity=0.354 Sum_probs=170.1
Q ss_pred hhhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 44 ELSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 44 ~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
++++++++++.|+ .+.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.+++. ..+||++
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--------~~igyv~ 578 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--------VRMAVFS 578 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--------eeEEEEe
Confidence 5688999999995 456999999999999999999999999999999999999999999998752 3599999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
|+. .+.+++.++..+......+.. .++++.++++.+|+.+ .. ++++..|||||||||+||++|+.+|++
T Consensus 579 Q~~--~~~l~~~~~~~~~~~~~~~~~---~~~~i~~~L~~~gl~~~~~-----~~~~~~LSgGqkqRvaLAraL~~~p~l 648 (718)
T PLN03073 579 QHH--VDGLDLSSNPLLYMMRCFPGV---PEQKLRAHLGSFGVTGNLA-----LQPMYTLSGGQKSRVAFAKITFKKPHI 648 (718)
T ss_pred ccc--cccCCcchhHHHHHHHhcCCC---CHHHHHHHHHHCCCChHHh-----cCCccccCHHHHHHHHHHHHHhcCCCE
Confidence 985 345566666443221111111 1356788999999963 34 446789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEE-EecChhHHHHH
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVL-HHGTVDLLSVS 272 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~~ 272 (643)
|||||||+|||+.++..+++.|++. .| |||++|||+. .+.++||++++|++|+++ +.|+.++..++
T Consensus 649 LLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 649 LLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 9999999999999999998888764 24 9999999997 488899999999999998 78887765443
No 348
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=276.27 Aligned_cols=218 Identities=27% Similarity=0.448 Sum_probs=180.1
Q ss_pred hhhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC--------ch--
Q 006505 43 EELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID--------KA-- 112 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~--------~~-- 112 (643)
.|+++++++++.|+...--+||||++.|||+++|+|.|||||||||++|++++.|+.|+|.+..++-. +.
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999764321 11
Q ss_pred --hhcccEEEEccCCC--CCC----CCCHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCH
Q 006505 113 --QFRKVSGYVTQRDT--LFP----LLTVEETLMF-SAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISG 183 (643)
Q Consensus 113 --~~~~~i~yv~Q~~~--l~~----~lTv~E~l~~-~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSG 183 (643)
-.|...|+|.|++. +-. .-.+.|-++- +.+ .-...++.+.++|+++.++..+ + |..++..||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-----HYG~iR~~a~~WL~~VEI~~~R---i-DD~PrtFSG 154 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-----HYGNIRAEAQDWLEEVEIDLDR---I-DDLPRTFSG 154 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-----hhhhHHHHHHHHHHhcccCccc---c-cCcccccch
Confidence 12445799999963 322 2234444331 111 1224566788899999886432 2 568899999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe
Q 006505 184 GERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH 263 (643)
Q Consensus 184 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 263 (643)
|+|||+.|||-|++.|++.|+||||.|||..-+.++.++++.+..+.|.+++++|||... +.-++||.++|++|++++.
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rlmvmk~g~vve~ 233 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLMVMKQGQVVES 233 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcceeecCCCEecc
Confidence 999999999999999999999999999999999999999999999999999999999863 5567999999999999999
Q ss_pred cChhHHH
Q 006505 264 GTVDLLS 270 (643)
Q Consensus 264 G~~~~~~ 270 (643)
|-.+.+.
T Consensus 234 GLTDrvL 240 (258)
T COG4107 234 GLTDRVL 240 (258)
T ss_pred ccccccc
Confidence 9887664
No 349
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9e-35 Score=286.39 Aligned_cols=205 Identities=22% Similarity=0.327 Sum_probs=182.3
Q ss_pred cccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCH
Q 006505 54 SDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTV 133 (643)
Q Consensus 54 ~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 133 (643)
......+|+||||++++||.+||+|+||||||||||+|+|.++|++|+|.++|+-...-.+ .-.+-|.+|.
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l---------g~Gf~pelTG 106 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL---------GAGFDPELTG 106 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc---------ccCCCcccch
Confidence 3456679999999999999999999999999999999999999999999999964321111 1234567999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 006505 134 EETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213 (643)
Q Consensus 134 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~ 213 (643)
+||+.+-+.+. +.+.++.+++++++++.-+|.+..| .+++.+|.||+-|++.|.+...+|+|||+||-.+--|+
T Consensus 107 reNi~l~~~~~-G~~~~ei~~~~~eIieFaELG~fi~-----~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~ 180 (249)
T COG1134 107 RENIYLRGLIL-GLTRKEIDEKVDEIIEFAELGDFID-----QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180 (249)
T ss_pred HHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHHHhh-----CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH
Confidence 99999877653 5678999999999999999998884 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHHHHHH
Q 006505 214 TSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSVSLRM 275 (643)
Q Consensus 214 ~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 275 (643)
.-+++-.+.++++.++ ++|||++|||++ .+.++||++++|++|++...|+++++.++++.
T Consensus 181 ~F~~K~~~rl~e~~~~-~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 181 AFQEKCLERLNELVEK-NKTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred HHHHHHHHHHHHHHHc-CCEEEEEECCHH-HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 9999999999999775 799999999998 59999999999999999999999999887764
No 350
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.5e-35 Score=342.06 Aligned_cols=198 Identities=22% Similarity=0.277 Sum_probs=164.6
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEcc
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQ 123 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q 123 (643)
.++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.+++ ++.++||+|
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--------~~~i~~v~Q 522 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--------KGKLFYVPQ 522 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--------CCcEEEECC
Confidence 467899998884 56799999999999999999999999999999999999999999998864 457999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcC----CCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG----DDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg----~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
++.+++. |++||+.++.........+..+++++++++.+++++..++..| ......||||||||++|||+|+++|
T Consensus 523 ~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p 601 (659)
T TIGR00954 523 RPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKP 601 (659)
T ss_pred CCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCC
Confidence 9998887 9999998754221000001123467889999999876654221 1245789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
++++|||||+|||+.+...+.+.+++ .|+|+|+++|+++ ..+.+|++++|+.
T Consensus 602 ~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 602 QFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 99999999999999999999998865 3899999999986 3588999999973
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.7e-35 Score=336.48 Aligned_cols=205 Identities=28% Similarity=0.368 Sum_probs=165.2
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccC
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR 124 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~ 124 (643)
++++++++++|+.+++|+||||++++|++++|+||||||||||||+|+|+.+|++|+|.++|.. .++|++|+
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~--------~~~~l~q~ 74 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL--------IVARLQQD 74 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC--------EEEEeccC
Confidence 4678999999999999999999999999999999999999999999999999999999998732 25677775
Q ss_pred CCCCCCCCHHHHHHH------------------------------HHHhc--CC-CCHHHHHHHHHHHHHHcCChhhhhh
Q 006505 125 DTLFPLLTVEETLMF------------------------------SAKLR--LR-LPQAQLRARVKSLVKELGLEHVAMA 171 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~------------------------------~~~~~--~~-~~~~~~~~~v~~~l~~lgl~~~~~~ 171 (643)
+......+|.+++.. ...+. .. ....+.+++++++++.+|+..
T Consensus 75 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~---- 150 (635)
T PRK11147 75 PPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP---- 150 (635)
T ss_pred CCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC----
Confidence 433233455554321 11000 00 001123457889999999862
Q ss_pred hcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCE
Q 006505 172 RVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNS 251 (643)
Q Consensus 172 ~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~ 251 (643)
++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+. .+.++||+
T Consensus 151 ---~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~-~l~~~~d~ 222 (635)
T PRK11147 151 ---DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRS-FIRNMATR 222 (635)
T ss_pred ---CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHH-HHHHhcCe
Confidence 4467899999999999999999999999999999999999999999999876 359999999997 48889999
Q ss_pred EEEEeCCeEE-EecChhHH
Q 006505 252 ILMLANGSVL-HHGTVDLL 269 (643)
Q Consensus 252 v~~L~~G~iv-~~G~~~~~ 269 (643)
|++|++|+++ +.|+.++.
T Consensus 223 i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEEEECCEEEEecCCHHHH
Confidence 9999999997 56887653
No 352
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=269.37 Aligned_cols=191 Identities=27% Similarity=0.367 Sum_probs=169.9
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCCcCCc-hhhcccEEEE
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---SGSTFVNGSPIDK-AQFRKVSGYV 121 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---~G~I~~~g~~~~~-~~~~~~i~yv 121 (643)
..++|++.+-++.-.|.|+|++|.+||++.|||||||||||||..+.|.+.+. +|++++|++.++. ...++++|..
T Consensus 3 l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiL 82 (213)
T COG4136 3 LCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGIL 82 (213)
T ss_pred eeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeee
Confidence 45678888888999999999999999999999999999999999999999886 9999999998864 4567899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
+||+.+||+++|.+||.|+..-.. ..+.+++.++..|++.||....+ +.+.+||||||-||++-|+|+..|+.
T Consensus 83 FQD~lLFphlsVg~Nl~fAlp~~~--KG~aRr~~a~aAL~~~gL~g~f~-----~dP~tlSGGQrARvaL~R~Lla~Pk~ 155 (213)
T COG4136 83 FQDALLFPHLSVGQNLLFALPATL--KGNARRNAANAALERSGLDGAFH-----QDPATLSGGQRARVALLRALLAQPKA 155 (213)
T ss_pred ecccccccccccccceEEecCccc--ccHHHHhhHHHHHHHhccchhhh-----cChhhcCcchHHHHHHHHHHHhCcce
Confidence 999999999999999998753222 23355667899999999998774 47789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~ 243 (643)
++||||+|.||..-+.++.+..-.-.+..|..+|.+|||...
T Consensus 156 lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 156 LLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred eeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 999999999999999999999877777789999999999863
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.6e-34 Score=279.64 Aligned_cols=159 Identities=24% Similarity=0.337 Sum_probs=134.3
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEET 136 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 136 (643)
.+++|+|+|+++++|++++|+||||||||||||+|.+ ++|++.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~--~~~~~~~~~~~q------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLP--KFSRNKLIFIDQ------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCccc--ccccccEEEEhH-------------
Confidence 4679999999999999999999999999999999963 689999988732 112345788877
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-hhhhcCCCcCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCH
Q 006505 137 LMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-AMARVGDDRVRGISGGERRRVSIGFDVIHD--PKVLILDEPTSGLDS 213 (643)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~~--p~illlDEPtsgLD~ 213 (643)
.++++.+++... . +++++.||||||||++||++|+.+ |++++|||||+|||+
T Consensus 68 --------------------~~~l~~~~L~~~~~-----~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 --------------------LQFLIDVGLGYLTL-----GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred --------------------HHHHHHcCCCcccc-----CCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 235677787642 3 446789999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 214 TSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 214 ~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
.++..+.+.|+++++ .|+|||++||+++. + +.+|++++|.+|+...
T Consensus 123 ~~~~~l~~~l~~~~~-~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 123 QDINQLLEVIKGLID-LGNTVILIEHNLDV-L-SSADWIIDFGPGSGKS 168 (176)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-H-HhCCEEEEECCCCCCC
Confidence 999999999999976 59999999999863 4 6899999997655433
No 354
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-35 Score=274.98 Aligned_cols=188 Identities=29% Similarity=0.429 Sum_probs=167.7
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc--hhhcccEEEEcc
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK--AQFRKVSGYVTQ 123 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q 123 (643)
+..++++-..+.+.++.++||++.+||++-|.||||||||||||+|+|+.+|++|+|+++|.+++. +.+++.+-|+-.
T Consensus 3 L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH 82 (209)
T COG4133 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGH 82 (209)
T ss_pred chhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhc
Confidence 346777888899999999999999999999999999999999999999999999999999998854 346677889999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
.+.+-+.+||.|||.|..++.... ....+.+.++.+||....|. +++.||-||||||+|||-+++.+++.|
T Consensus 83 ~~giK~eLTa~ENL~F~~~~~~~~----~~~~i~~Al~~vgL~g~~dl-----p~~~LSAGQqRRvAlArL~ls~~pLWi 153 (209)
T COG4133 83 QPGIKTELTALENLHFWQRFHGSG----NAATIWEALAQVGLAGLEDL-----PVGQLSAGQQRRVALARLWLSPAPLWI 153 (209)
T ss_pred cccccchhhHHHHHHHHHHHhCCC----chhhHHHHHHHcCccccccc-----chhhcchhHHHHHHHHHHHcCCCCcee
Confidence 999999999999999987765431 23468899999999887755 567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~ 243 (643)
||||+++||......+-.++..-+.+ |-.||.+||||..
T Consensus 154 LDEP~taLDk~g~a~l~~l~~~H~~~-GGiVllttHq~l~ 192 (209)
T COG4133 154 LDEPFTALDKEGVALLTALMAAHAAQ-GGIVLLTTHQPLP 192 (209)
T ss_pred ecCcccccCHHHHHHHHHHHHHHhcC-CCEEEEecCCccC
Confidence 99999999999999999999998875 8899999999864
No 355
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.3e-35 Score=361.56 Aligned_cols=204 Identities=27% Similarity=0.441 Sum_probs=172.8
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv 121 (643)
.++++|++.+|+. +++|+|+|+++++||.++|+||||||||||+++|.|.++|.+|.+. .+++.++||
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~---------~~~~~Iayv 684 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV---------VIRGSVAYV 684 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---------EecCcEEEE
Confidence 3668888888863 5799999999999999999999999999999999999999988763 346789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+|++.+|.. |++|||.|+.. .+ +++.+++++..++.+.. +|.+|+ ....||||||||++||||
T Consensus 685 ~Q~p~Lf~g-TIreNI~fg~~----~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe-~G~~LSGGQkQRIaLARA 754 (1495)
T PLN03232 685 PQVSWIFNA-TVRENILFGSD----FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGE-RGVNISGGQKQRVSMARA 754 (1495)
T ss_pred cCccccccc-cHHHHhhcCCc----cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecC-CCcccCHHHHHHHHHHHH
Confidence 999999987 99999998632 12 34566777777765432 466654 466899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDM-LKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~-L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
+.++|+|++||||||+||+.++.++++. ++... .|+|+|++||+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 755 ly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 755 VYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999999999988765 55543 4899999999986 467899999999999999999998753
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-34 Score=275.39 Aligned_cols=153 Identities=42% Similarity=0.718 Sum_probs=140.2
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccC
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQR 124 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~ 124 (643)
++++.++|.++.+++++|+++++||+++|+||||||||||+++|+|.++|++|+|+++|.++.. ...++.++|++|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q- 80 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ- 80 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-
Confidence 4567778877789999999999999999999999999999999999999999999999987643 345677899998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
|||||+||++||++++.+|++++|
T Consensus 81 --------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 81 --------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred --------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
||||+|||..++..+.+.++++++. ++|++++||+++ ++...+|+++++++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999875 899999999997 4778889999999875
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.3e-35 Score=331.01 Aligned_cols=190 Identities=27% Similarity=0.408 Sum_probs=160.5
Q ss_pred ccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEE-----------ECCCcCCch--h--
Q 006505 50 EAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTF-----------VNGSPIDKA--Q-- 113 (643)
Q Consensus 50 ~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~-----------~~g~~~~~~--~-- 113 (643)
+++++|+.+ .+|++++ .+++||+++|+||||||||||||+|+|+++|++|+|. ++|+++... .
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 377889874 6999999 9999999999999999999999999999999999997 999887431 1
Q ss_pred -hcccEEEEccCCCCCCC---CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHH
Q 006505 114 -FRKVSGYVTQRDTLFPL---LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 114 -~~~~i~yv~Q~~~l~~~---lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv 189 (643)
.+..+++.+|.....|. .||+|++... +.+++++++++.+||++..+ +.+.+|||||||||
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~----------~~~~~~~~~l~~l~l~~~~~-----~~~~~LSgGe~qrv 221 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKV----------DERGKLDEVVERLGLENILD-----RDISELSGGELQRV 221 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhh----------hHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHH
Confidence 12335666665433332 2999998631 13457889999999987764 46779999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG 258 (643)
Q Consensus 190 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 258 (643)
+||++|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+..++|++++|++|
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999975 899999999997 588999999999863
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-34 Score=359.18 Aligned_cols=203 Identities=29% Similarity=0.467 Sum_probs=174.3
Q ss_pred hhhcccccccccc---cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCc-cEEEECCCcCCchhhcccEEE
Q 006505 45 LSKLEEAADSDGV---RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS-GSTFVNGSPIDKAQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~-G~I~~~g~~~~~~~~~~~i~y 120 (643)
.+.++|++.+|+. +++|+|+|+++++||.++|+||||||||||+++|.|.++|.+ |+|.+ ++.++|
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l----------~~~Iay 683 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI----------RGTVAY 683 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE----------cCeEEE
Confidence 4678888888863 579999999999999999999999999999999999999999 99975 456999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
|+|++.++.. |++|||.|+.. . .+++.+++++..+|.+.. +|.+|+ ....||||||||++|||
T Consensus 684 v~Q~p~Lfng-TIreNI~fg~~----~----d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe-~G~~LSGGQKQRIaLAR 753 (1622)
T PLN03130 684 VPQVSWIFNA-TVRDNILFGSP----F----DPERYERAIDVTALQHDLDLLPGGDLTEIGE-RGVNISGGQKQRVSMAR 753 (1622)
T ss_pred EcCccccCCC-CHHHHHhCCCc----c----cHHHHHHHHHHhCcHHHHHhCCCcccccccC-CCCCCCHHHHHHHHHHH
Confidence 9999999986 99999998632 1 245677788877776533 566654 45689999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIID-MLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+.++|+|++||||||+||+.++.++++ .++... .|+|+|++||+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 754 Aly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 754 AVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999998865 566554 3899999999985 568899999999999999999998753
No 359
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-34 Score=300.35 Aligned_cols=213 Identities=30% Similarity=0.454 Sum_probs=178.5
Q ss_pred cccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEcc
Q 006505 48 LEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQ 123 (643)
Q Consensus 48 ~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q 123 (643)
.++++..| +.+++|+++||++++|+.+||+||||+||||++++|-..+++.+|.|.+||+++.. ...|+.||.|||
T Consensus 265 F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQ 344 (497)
T COG5265 265 FINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQ 344 (497)
T ss_pred EEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence 34555555 45789999999999999999999999999999999999999999999999998843 568899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 124 RDTLFPLLTVEETLMFSAKLRLRLPQAQLRA-----RVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 124 ~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~-----~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|..||.+ |...|+.++.. ..+.++..+ .+...++. +.+-.++.||.+. -.|||||||||+|||+++.+
T Consensus 345 DtvLFND-ti~yni~ygr~---~at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vgerg-lklSggekqrvaiar~ilk~ 417 (497)
T COG5265 345 DTVLFND-TIAYNIKYGRP---DATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGERG-LKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred cceehhh-hHHHHHhccCc---cccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchhe-eeccCchHHHHHHHHHHhcC
Confidence 9999987 99999988631 123333222 22233332 3455678887543 46999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|+||+|||.||+||..+.+++...|+++++ |+|.+++.|.++. + --+|.|+||++|+|++.|..+++..
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHH
Confidence 999999999999999999999999999983 8999999999974 4 5699999999999999999999875
No 360
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.7e-34 Score=352.49 Aligned_cols=205 Identities=21% Similarity=0.363 Sum_probs=169.6
Q ss_pred hhhcccccccccc--cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 45 LSKLEEAADSDGV--RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 45 ~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
.++++|++..|+. +++|+|+|+++++||+++|+||||||||||+++|+|.++|++|+|.++| .++||+
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~yv~ 705 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----------SVAYVP 705 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----------EEEEEc
Confidence 4678899988864 5799999999999999999999999999999999999999999999987 489999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-------hhhhhcCCCcCCCCCHHHHHHHHHHHHH
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-------VAMARVGDDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-------~~~~~vg~~~~~~LSGGerqRv~ia~aL 195 (643)
|++.+++ .|++||+.|+... .+ ++.+++++..++.+ -.++.+| +.+..||||||||++||||+
T Consensus 706 Q~~~l~~-~Ti~eNI~~g~~~----~~----~~~~~~~~~~~l~~~l~~~~~g~~t~ig-~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 706 QQAWIQN-DSLRENILFGKAL----NE----KYYQQVLEACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred CCccccC-CcHHHHhhcCCcc----CH----HHHHHHHHHhCCHHHHHhcCCCCCceec-CCCCCCCHHHHHHHHHHHHH
Confidence 9998876 5999999986321 12 22333333333322 1234454 45789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMA-ETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~-~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
.++|++++||||||+||+.++..+.+.+.+.. ...|+|+|++||+++. .+.+|+|++|++|+++..|+++++.+
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 99999999999999999999999999997532 1247999999999963 45699999999999999999988753
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.2e-33 Score=348.02 Aligned_cols=191 Identities=29% Similarity=0.458 Sum_probs=159.5
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEET 136 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 136 (643)
.+++|+|+|+++++||+++|+|||||||||||++|+|..+|++|+|.++| .++||+|++.+++. ||+||
T Consensus 438 ~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----------EEEEEeCCCccCCc-cHHHH
Confidence 36799999999999999999999999999999999999999999999998 38999999999986 99999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-------hhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 006505 137 LMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-------AMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS 209 (643)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-------~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts 209 (643)
+.|+... .. ++.+++++..+|.+. .+|.+| +.+..||||||||++||||++.+|+++||||||+
T Consensus 507 I~~g~~~----~~----~~~~~~~~~~~L~~~l~~l~~g~~t~vg-~~g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 507 IIFGLSY----DE----YRYTSVIKACQLEEDIALFPEKDKTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred HHhcccc----ch----HHHHHHHHHHhHHHHHHhcccccccccc-CcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9987421 11 122233333333221 134454 3478999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 210 GLDSTSALQIIDM-LKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 210 gLD~~~~~~i~~~-L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+.++.++.+. ++++. .|+|+|++||+++. + +.+|+|++|++|+++..|+++++.+
T Consensus 578 aLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999984 66665 38999999999963 4 5699999999999999999988753
No 362
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.6e-32 Score=340.65 Aligned_cols=192 Identities=26% Similarity=0.419 Sum_probs=155.7
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
+.+++|+|+|+++++||+++|+|||||||||||++|+|.++|++|+|.++ +.++|++|++.+++ .|++|
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC----------CeEEEEeCCCccCC-CcHHH
Confidence 55779999999999999999999999999999999999999999999863 46999999998876 59999
Q ss_pred HHHHHHHhcCCCCHHHHH-----HHHHHHHHHc--CChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 006505 136 TLMFSAKLRLRLPQAQLR-----ARVKSLVKEL--GLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPt 208 (643)
|+.|+... ..+... ...++.++.+ |++ +.+ ++.+..||||||||++|||||+.+|++++|||||
T Consensus 740 nI~~~~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~----t~i-~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 740 NILFFDEE----DAARLADAVRVSQLEADLAQLGGGLE----TEI-GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred HHHcCChh----hHHHHHHHHHHhhhHHHHHHhhccch----HHh-cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99985211 111111 1122333443 332 333 3467899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
++||+.++..+++.+..... .|+|+|++||+++. .+.+|+|++|++|++++.|+.+++.
T Consensus 811 saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 811 SALDAHVGERVVEECFLGAL-AGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999875432223 38999999999863 4789999999999999999998875
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=7e-33 Score=307.86 Aligned_cols=205 Identities=35% Similarity=0.448 Sum_probs=171.9
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccC
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQR 124 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~ 124 (643)
++.++++++.|+.+++++|+|+++.+|+.+||+|+||||||||||+|+|...|++|+|...+. -+++|++|+
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--------~~v~~l~Q~ 74 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--------LRVGYLSQE 74 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--------ceEEEeCCC
Confidence 467889999999999999999999999999999999999999999999999999999987542 248999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCC-----------------------------CHHHHHHHHHHHHHHcCChhhhhhhcCC
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRL-----------------------------PQAQLRARVKSLVKELGLEHVAMARVGD 175 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~-----------------------------~~~~~~~~v~~~l~~lgl~~~~~~~vg~ 175 (643)
+.+.+..||.+.+.-+..-.... ..-+.+.+++.++..+|+.+. +
T Consensus 75 ~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~----- 148 (530)
T COG0488 75 PPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D----- 148 (530)
T ss_pred CCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c-----
Confidence 99999999999887543210000 000123567788888888764 3
Q ss_pred CcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 176 DRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 176 ~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
+++.+||||||.||+||++|+.+|++|||||||++||..+..-+-+.|++. .| |+|++|||-.. +-+.|++|+-+
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~F-Ld~V~t~I~~l 223 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYF-LDNVATHILEL 223 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHH-HHHHhhheEEe
Confidence 366799999999999999999999999999999999999999999999864 47 99999999875 88899999999
Q ss_pred eCCeE-EEecChhH
Q 006505 256 ANGSV-LHHGTVDL 268 (643)
Q Consensus 256 ~~G~i-v~~G~~~~ 268 (643)
+.|++ .|.|+.+.
T Consensus 224 d~g~l~~y~Gny~~ 237 (530)
T COG0488 224 DRGKLTPYKGNYSS 237 (530)
T ss_pred cCCceeEecCCHHH
Confidence 99976 45666554
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.5e-33 Score=320.58 Aligned_cols=215 Identities=22% Similarity=0.263 Sum_probs=162.3
Q ss_pred hhhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC---CCCccEEEECCCcC-----Cc----
Q 006505 44 ELSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL---TPQSGSTFVNGSPI-----DK---- 111 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~---~~~~G~I~~~g~~~-----~~---- 111 (643)
.+++++|++++|+.+++|+|+|++|++|+.+||+||||||||||||+|+|+. .|.+|+|.+.+++. +.
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v 255 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV 255 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence 4678999999999999999999999999999999999999999999999964 57789997655432 11
Q ss_pred --------hhhcccEEEEccCCCCCCCCCHHHHHHHHHHh----------------cCC-CCHHHHHHHHHHHHHHcCCh
Q 006505 112 --------AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKL----------------RLR-LPQAQLRARVKSLVKELGLE 166 (643)
Q Consensus 112 --------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~----------------~~~-~~~~~~~~~v~~~l~~lgl~ 166 (643)
...++.++|++|++.+... ++.++....... +.. ......++++.++++.+|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~ 334 (718)
T PLN03073 256 LNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT 334 (718)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence 0012336777776433221 111111100000 000 00112345677788888885
Q ss_pred -hhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 006505 167 -HVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRI 245 (643)
Q Consensus 167 -~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i 245 (643)
+.. ++++.+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||++|||.. .+
T Consensus 335 ~~~~-----~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~-~l 404 (718)
T PLN03073 335 PEMQ-----VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHARE-FL 404 (718)
T ss_pred hHHH-----hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHH-HH
Confidence 333 3467899999999999999999999999999999999999999999999875 679999999987 47
Q ss_pred HhhcCEEEEEeCCeEE-EecChhHH
Q 006505 246 VKMFNSILMLANGSVL-HHGTVDLL 269 (643)
Q Consensus 246 ~~~~D~v~~L~~G~iv-~~G~~~~~ 269 (643)
.++||++++|++|++. |.|+.++.
T Consensus 405 ~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 405 NTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHhCCEEEEEECCEEEEeCCCHHHH
Confidence 8899999999999996 67876654
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=1.6e-31 Score=269.79 Aligned_cols=192 Identities=23% Similarity=0.352 Sum_probs=137.3
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHH-HHHhcCCCCCccEEEECC-------------CcCCchhhc-ccEEE
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLL-EILAGKLTPQSGSTFVNG-------------SPIDKAQFR-KVSGY 120 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL-~~l~g~~~~~~G~I~~~g-------------~~~~~~~~~-~~i~y 120 (643)
....+|+|||+++++||+++|+||||||||||+ ..+.. +|++.+.+ ........+ ...++
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 456799999999999999999999999999995 44431 23321110 000001111 12344
Q ss_pred EccCCC--CCCCCCHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 121 VTQRDT--LFPLLTVE---ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 121 v~Q~~~--l~~~lTv~---E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
..|++. +.|..+|. |...+...+. ..+...++ .+.++.+++.+ .. +.++.+||||||||++||++
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~-~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~lara 151 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLF---ARVGIRER-LGFLVDVGLGYLTL-----SRSAPTLSGGEAQRIRLATQ 151 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHh---hhhhHHHH-HHHHHHCCCCcccc-----cCccCcCCHHHHHHHHHHHH
Confidence 444432 34444554 2222221111 11222233 56899999975 24 55788999999999999999
Q ss_pred HhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEec
Q 006505 195 VIHDP--KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHG 264 (643)
Q Consensus 195 L~~~p--~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G 264 (643)
|+.+| ++++|||||+|||+.++..+.+.|+++++ .|.|||++||+++ .+ +.||++++| ++|+++++|
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99998 59999999999999999999999999976 4999999999996 34 699999999 999999876
No 366
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=4e-32 Score=252.05 Aligned_cols=134 Identities=46% Similarity=0.788 Sum_probs=121.8
Q ss_pred eeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccCCCCCCCCCHHHHH
Q 006505 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQRDTLFPLLTVEETL 137 (643)
Q Consensus 61 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~l 137 (643)
|+|||+++++||+++|+|+||||||||+++|+|..+|++|+|.++|+++.. ...++.++|++|++.+++.+||+||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999999999999999999865 4567899999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS 209 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts 209 (643)
..+++++++++.+++.+..++.+ ++....||||||||++||+||+.+|++++|||||+
T Consensus 80 -------------~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------------ESDERIEEVLKKLGLEDLLDRKI-GQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------------HHHHHHHHHHHHTTHGGGTGSBG-TSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------------ccccccccccccccccccccccc-ccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23456889999999988777766 34558999999999999999999999999999996
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.8e-31 Score=317.17 Aligned_cols=213 Identities=25% Similarity=0.320 Sum_probs=183.8
Q ss_pred hhhccccccccccc--ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 45 LSKLEEAADSDGVR--RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~~--~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
-++++|++.+|... .+|||||++|+|||.+||+|+.|||||||.++|-.+..|.+|+|.+||.++.. .++|++++
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrls 1217 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLS 1217 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCe
Confidence 36789999999765 79999999999999999999999999999999999999999999999999865 67899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHH
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIG 192 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia 192 (643)
.+||||.+|.+ |+|+||.=. .+-.++++-+.|+..+|.+.. |..+ .+....+|-||||.+++|
T Consensus 1218 IIPQdPvLFsG-TvR~NLDPf--------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v-~egG~N~SvGQRQLlCLA 1287 (1381)
T KOG0054|consen 1218 IIPQDPVLFSG-TVRFNLDPF--------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEV-SEGGENFSVGQRQLLCLA 1287 (1381)
T ss_pred eeCCCCceecC-ccccccCcc--------cccCHHHHHHHHHHhChHHHHhhCCcCCCcee-cCCCccCChHHHHHHHHH
Confidence 99999999999 999998621 111234566667776665443 2333 345678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 193 FDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 193 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
|||+++++||+|||+|++.|+.|-..|.+.||+-= .++|||.+.|..+. +. -+|||+||++|+++++|+|.++.+
T Consensus 1288 RALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~T-Vm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1288 RALLRKSKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHRLNT-VM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHhccCCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeeccch-hh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999999999999999865 37999999999984 54 489999999999999999999874
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.2e-29 Score=301.78 Aligned_cols=203 Identities=30% Similarity=0.470 Sum_probs=173.8
Q ss_pred hhhccccccccc---ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEE
Q 006505 45 LSKLEEAADSDG---VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYV 121 (643)
Q Consensus 45 ~~~~~~~~~~~~---~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv 121 (643)
.+++++.+.+.+ ..+.|+|||+++++|+++||+||-|||||+||.+|.|-.+..+|+|.++|. ++||
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----------iaYv 587 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----------VAYV 587 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----------EEEe
Confidence 455666655543 344899999999999999999999999999999999999999999999985 8999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhh-------hhhcCCCcCCCCCHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVA-------MARVGDDRVRGISGGERRRVSIGFD 194 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~-------~~~vg~~~~~~LSGGerqRv~ia~a 194 (643)
+|.+.++.. ||||||.|+..+ .+++.+++++...|++.. .|.|| ++.-.||||||||+++|||
T Consensus 588 ~Q~pWI~ng-TvreNILFG~~~--------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIG-ErGinLSGGQKqRIsLARA 657 (1381)
T KOG0054|consen 588 PQQPWIQNG-TVRENILFGSPY--------DEERYDKVIKACALKKDLEILPFGDLTEIG-ERGINLSGGQKQRISLARA 657 (1381)
T ss_pred ccccHhhCC-cHHHhhhcCccc--------cHHHHHHHHHHccCHhHHhhcCCCCcceec-CCccCCcHhHHHHHHHHHH
Confidence 999999987 999999997543 246777888888776544 34444 4566899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 195 VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+-++++|++||.|.|++|++...++.+..-+-.- +++|+|++|||.. ..+.+|.|++|++|++...|+.+|+.
T Consensus 658 VY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 658 VYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCHHHHH
Confidence 9999999999999999999999999866554333 4899999999974 67899999999999999999999987
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.7e-30 Score=266.11 Aligned_cols=194 Identities=26% Similarity=0.377 Sum_probs=154.6
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHh-----c---CC--CCC-----------ccEEEECCCcCCc-----
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILA-----G---KL--TPQ-----------SGSTFVNGSPIDK----- 111 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~-----g---~~--~~~-----------~G~I~~~g~~~~~----- 111 (643)
..-|+|||..|+.|++++|.|+||||||||++.+. . .. .|. +--|.++..|+..
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45689999999999999999999999999998552 1 10 121 1247788777632
Q ss_pred --------hhhcc----------------cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh
Q 006505 112 --------AQFRK----------------VSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH 167 (643)
Q Consensus 112 --------~~~~~----------------~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~ 167 (643)
..+|+ .+.|..++...+..+||.|++.|...+. ..+++.++++.+||..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~-------~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP-------KIARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh-------hHHHHHHHHHHcCCch
Confidence 11111 1346666666678899999999876542 1245778999999976
Q ss_pred -hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 006505 168 -VAMARVGDDRVRGISGGERRRVSIGFDVIHD---PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 168 -~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~---p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~ 243 (643)
.. ++.+.+||||||||++||++|+.+ |++++|||||+|||+.....+.+.|++++++ |.|||+++|+++.
T Consensus 161 l~l-----~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIiitH~~~~ 234 (261)
T cd03271 161 IKL-----GQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDV 234 (261)
T ss_pred hhh-----cCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 34 456789999999999999999996 7999999999999999999999999999864 9999999999963
Q ss_pred HHHhhcCEEEEE------eCCeEEEecCh
Q 006505 244 RIVKMFNSILML------ANGSVLHHGTV 266 (643)
Q Consensus 244 ~i~~~~D~v~~L------~~G~iv~~G~~ 266 (643)
+ +.+|+++.| ++|++++.|++
T Consensus 235 -i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 235 -I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 4 679999999 89999999974
No 370
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.2e-31 Score=243.79 Aligned_cols=204 Identities=26% Similarity=0.381 Sum_probs=167.1
Q ss_pred hccccccccc-------ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCc--CC-----c-
Q 006505 47 KLEEAADSDG-------VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP--ID-----K- 111 (643)
Q Consensus 47 ~~~~~~~~~~-------~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~--~~-----~- 111 (643)
.+++++|.+. .-++++|+||+++.||++++=||||||||||||+|-|-+.|++|+|.+.-.. ++ +
T Consensus 6 ~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr 85 (235)
T COG4778 6 NVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85 (235)
T ss_pred eeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChH
Confidence 4555555552 2369999999999999999999999999999999999999999999986432 11 1
Q ss_pred --hh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHH
Q 006505 112 --AQ-FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR 188 (643)
Q Consensus 112 --~~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqR 188 (643)
-+ .|+.+|||.|--...|..+..|-.+-.+.- .+.+.+..++++..++.+|++.+..- .-.+.+.|||||||
T Consensus 86 ~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~-~gv~~~~a~~~a~~Ll~rLnlperLW----~LaPaTFSGGEqQR 160 (235)
T COG4778 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADLLTRLNLPERLW----SLAPATFSGGEQQR 160 (235)
T ss_pred HHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHh----cCCCcccCCchhee
Confidence 12 346689999987778877777776655433 35577778889999999999976442 33678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 189 VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 189 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
|.|||.++.+-+||+|||||+.||..++..++++|++-+. .|..+|=+-||-+. -...+||++-+..
T Consensus 161 VNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka-~GaAlvGIFHDeev-re~vadR~~~~~~ 227 (235)
T COG4778 161 VNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA-RGAALVGIFHDEEV-REAVADRLLDVSA 227 (235)
T ss_pred hhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh-cCceEEEeeccHHH-HHHHhhheeeccc
Confidence 9999999999999999999999999999999999998765 59999999999642 3457999988753
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.2e-29 Score=275.76 Aligned_cols=213 Identities=23% Similarity=0.433 Sum_probs=180.0
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEE
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGY 120 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~y 120 (643)
..++++++... .++|+||++++||+++|-|-=|||+|-|+++|.|..++.+|+|.+||+++.. ...+..++|
T Consensus 263 ~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~ 338 (500)
T COG1129 263 VLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAY 338 (500)
T ss_pred EEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEe
Confidence 34455554322 5799999999999999999999999999999999988999999999998743 356778999
Q ss_pred EccC---CCCCCCCCHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH
Q 006505 121 VTQR---DTLFPLLTVEETLMFSAKLRL----RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 121 v~Q~---~~l~~~lTv~E~l~~~~~~~~----~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~ 193 (643)
||.| +.++..++|+||+.++...+. ..+.+..++.+++..+.|++.... . +..+..||||.||||.||+
T Consensus 339 v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~---~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 339 VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-P---EQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-c---cchhhcCCchhhhhHHHHH
Confidence 9988 468999999999998832221 124455566789999999985321 1 4577899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
.|..+|++|||||||.|.|.-++.+|.++++++|++ |++||++|.++. |+..+||||+||++|+++..=+.+
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElp-Ell~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELP-ELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChH-HHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999986 999999999997 799999999999999998754444
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.7e-29 Score=280.85 Aligned_cols=206 Identities=29% Similarity=0.387 Sum_probs=172.2
Q ss_pred hhhhhhhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEE
Q 006505 41 AQEELSKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119 (643)
Q Consensus 41 ~~~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~ 119 (643)
...+++.++++++.|++ +.+++++||.+.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-. -.+|
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--------v~ig 388 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--------VKIG 388 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--------eEEE
Confidence 34567889999999966 69999999999999999999999999999999999999999999987521 3489
Q ss_pred EEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 120 YVTQRD-TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 120 yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
|..|+. .+.+..|+.|++.-.. + +..+..+...|..+++....- .++++.||||||.|+.+|+.++.+
T Consensus 389 yf~Q~~~~l~~~~t~~d~l~~~~----~---~~~e~~~r~~L~~f~F~~~~~----~~~v~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 389 YFDQHRDELDPDKTVLEELSEGF----P---DGDEQEVRAYLGRFGFTGEDQ----EKPVGVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEehhhhcCccCcHHHHHHhhC----c---cccHHHHHHHHHHcCCChHHH----hCchhhcCHhHHHHHHHHHHhccC
Confidence 999985 5568889999886432 1 111567889999999974321 346789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEe-cChhHHHH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHH-GTVDLLSV 271 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~-G~~~~~~~ 271 (643)
|.+|+|||||+.||..+...+.+.|.+. .-|||++|||... +-+++++++.+.+ ++..+ |..++-.+
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~F-l~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYF-LDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHH-HHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 9999999999999999999999999875 4599999999985 8899999999998 55444 76655443
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=7.6e-30 Score=252.11 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=132.9
Q ss_pred eceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC---------ccEEEECCCcCCchhhcccEEEEccCCCCCCCCC
Q 006505 62 DGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ---------SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLT 132 (643)
Q Consensus 62 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~---------~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 132 (643)
+++++++++| +++|+||||||||||+++|+|+..+. .|++.++|++......++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999997554 357888887764433457899999998765
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCC
Q 006505 133 VEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI----HDPKVLILDEPT 208 (643)
Q Consensus 133 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~----~~p~illlDEPt 208 (643)
|.. . . .++++++++. .+.. +..+..||||||||++||++++ .+|++++|||||
T Consensus 89 ------~~~--~---~----~~~~~~~l~~---~~~~-----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 ------YSI--I---S----QGDVSEIIEA---PGKK-----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred ------eeE--E---e----hhhHHHHHhC---CCcc-----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 110 0 1 2356666666 2223 4467899999999999999997 467999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
+|||+.++..+.+.|+++++ +.|||++||+++ ..+.+|+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSK--ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 99999999999999999864 689999999986 3578999999974
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=3.5e-29 Score=255.26 Aligned_cols=187 Identities=18% Similarity=0.301 Sum_probs=138.9
Q ss_pred ccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHh----------------cCCCCCcc--------EEEECCCc
Q 006505 53 DSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILA----------------GKLTPQSG--------STFVNGSP 108 (643)
Q Consensus 53 ~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~----------------g~~~~~~G--------~I~~~g~~ 108 (643)
++|+++.++++++ |++++|+||||||||||+++|+ ++..+++| +|.+++.+
T Consensus 10 ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~ 84 (243)
T cd03272 10 KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSD 84 (243)
T ss_pred cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCC
Confidence 4677888888887 7899999999999999999998 44455566 77776632
Q ss_pred C----C--chhhcccEEEEccCCCCCC-CCCHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHcCChhhhhhhcCCCcC
Q 006505 109 I----D--KAQFRKVSGYVTQRDTLFP-LLTVEETLMFSAKLRLRLPQA---QLRARVKSLVKELGLEHVAMARVGDDRV 178 (643)
Q Consensus 109 ~----~--~~~~~~~i~yv~Q~~~l~~-~lTv~E~l~~~~~~~~~~~~~---~~~~~v~~~l~~lgl~~~~~~~vg~~~~ 178 (643)
. . +...++.++|++|+..+++ ..|..|...+...+....... ....++.++ +++.+.. +..+
T Consensus 85 ~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l---~~l~~~~-----~~~~ 156 (243)
T cd03272 85 NRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSL---TNMKQDE-----QQEM 156 (243)
T ss_pred CccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHh---hhccccc-----cccc
Confidence 1 1 1245677899999887777 467777665554432211000 001123333 3443333 4467
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 179 RGISGGERRRVSIGFDVIH----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
+.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++|||+++|++ ++.+++|++++
T Consensus 157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~--~~~~~~d~i~~ 232 (243)
T cd03272 157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRP--ELLEVADKFYG 232 (243)
T ss_pred cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHhhCCEEEE
Confidence 8999999999999999973 5899999999999999999999999999864 78999999996 47799999999
Q ss_pred Ee
Q 006505 255 LA 256 (643)
Q Consensus 255 L~ 256 (643)
|.
T Consensus 233 l~ 234 (243)
T cd03272 233 VK 234 (243)
T ss_pred EE
Confidence 96
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=8.5e-30 Score=237.24 Aligned_cols=197 Identities=27% Similarity=0.447 Sum_probs=169.4
Q ss_pred eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccCCCCCCCCCHHHH
Q 006505 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQRDTLFPLLTVEET 136 (643)
Q Consensus 60 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~E~ 136 (643)
-|-.+|+.+..||+.-++|||||||||||-.++|+. |.+|+|.++|.++.. .+..++-+|..|+..-...+.|...
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 367899999999999999999999999999999996 579999999999854 3555667899988665555788888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc-----CC--CEEEEeCCCC
Q 006505 137 LMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH-----DP--KVLILDEPTS 209 (643)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~-----~p--~illlDEPts 209 (643)
+.+. . +.++....++++.+.++|++.. .+.+..|||||-|||-+|...+. || ++|+||||.+
T Consensus 93 L~L~----q--P~~~~a~~i~~i~~~L~l~DKL-----~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~ 161 (248)
T COG4138 93 LTLH----Q--PDKTRTELLNDVAGALALDDKL-----GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMN 161 (248)
T ss_pred hhhc----C--chHHHHHHHHHHHhhhcccchh-----hhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCc
Confidence 7642 2 4466667789999999998766 34667999999999999987664 44 6899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 210 GLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 210 gLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+||...+..+-.+|.+++++ |.+||++.||.+. ..+.+|++.+|+.|++...|..+|+.
T Consensus 162 ~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 162 SLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred chhHHHHHHHHHHHHHHHhC-CcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999999985 9999999999985 78999999999999999999998874
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=4.2e-28 Score=248.77 Aligned_cols=182 Identities=19% Similarity=0.241 Sum_probs=140.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCC-cCCc-----hhhcccEEEEccCC---------CCCCCCCHH
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKLTPQ-SGSTFVNGS-PIDK-----AQFRKVSGYVTQRD---------TLFPLLTVE 134 (643)
Q Consensus 71 Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-~G~I~~~g~-~~~~-----~~~~~~i~yv~Q~~---------~l~~~lTv~ 134 (643)
..+++|+||||||||||+++|++++.+. .|++...|. ++-. ...+..+++++|++ .+.|.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4599999999999999999999999876 568888776 3211 11234789999985 345678999
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCChhhhhh---------------hcCCCcCCCCCHHHHHHHHHHHHHh--
Q 006505 135 ETLMFSAKLRLRL-PQAQLRARVKSLVKELGLEHVAMA---------------RVGDDRVRGISGGERRRVSIGFDVI-- 196 (643)
Q Consensus 135 E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgl~~~~~~---------------~vg~~~~~~LSGGerqRv~ia~aL~-- 196 (643)
+++......+... .++...+++.++|+.+|+...... ...+.++.+||||||||++||++|+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 8886543211100 122334688899999998611000 1124578899999999999999998
Q ss_pred --cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 197 --HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 197 --~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
.+|+++++||||+|||+.++..+.+.|++++ + |.|||++||++ ++.+.+|+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 3 89999999995 5788999998875
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=4.5e-29 Score=249.34 Aligned_cols=184 Identities=17% Similarity=0.209 Sum_probs=140.0
Q ss_pred cccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCC
Q 006505 48 LEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTL 127 (643)
Q Consensus 48 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l 127 (643)
++|. +.|+.+.+++++++ ++++|+||||||||||+++|. .++|.+.. ...++.+++++|+..+
T Consensus 8 l~nf-k~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-~~~~~~i~~~~~~~~~ 70 (212)
T cd03274 8 LENF-KSYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-KMRQKKLSDLIHNSAG 70 (212)
T ss_pred EECc-ccCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-HhhhhhHHHHhcCCCC
Confidence 3443 37888899999987 899999999999999999997 23454431 1112568999999988
Q ss_pred CCCCCHHHHHHHHHHhcC-------CCCHHHHHH--HHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc-
Q 006505 128 FPLLTVEETLMFSAKLRL-------RLPQAQLRA--RVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH- 197 (643)
Q Consensus 128 ~~~lTv~E~l~~~~~~~~-------~~~~~~~~~--~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~- 197 (643)
++.+|++|.+.+...... +...+.... ..+++++.+++.+..++ .++.+|+|||||++||++++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~-----~~~~lS~G~~~r~~la~al~~~ 145 (212)
T cd03274 71 HPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWK-----NISNLSGGEKTLSSLALVFALH 145 (212)
T ss_pred CCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeecccccccc-----chhhcCHHHHHHHHHHHHHHhc
Confidence 999999998766543210 111110000 12556667777665533 567999999999999999974
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 198 ---DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 198 ---~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
+|+++++||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.++||++++|..
T Consensus 146 ~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 146 HYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 5799999999999999999999999999863 67888999996 57899999999974
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=2.4e-27 Score=235.67 Aligned_cols=167 Identities=22% Similarity=0.303 Sum_probs=130.8
Q ss_pred ceEEEEecCeEEEEECCCCCCHHHHHHHHh----cCCCCCccEEEECCCcCCchhhcccEEEEccCC-----CCCCCCCH
Q 006505 63 GVSCKAKPWEILAIVGPSGAGKSSLLEILA----GKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD-----TLFPLLTV 133 (643)
Q Consensus 63 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~----g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~-----~l~~~lTv 133 (643)
..++++.+| +++|+|||||||||||++|. |...|+.|.+..+...+.....+..+++++|++ .....+|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 345667788 99999999999999999995 998888877763222333334456789999987 34455688
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHH------HHHHHHHhcCCCEEEEeCC
Q 006505 134 EETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRR------VSIGFDVIHDPKVLILDEP 207 (643)
Q Consensus 134 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqR------v~ia~aL~~~p~illlDEP 207 (643)
.|++.+. ++. .+++.+ ++.++.||+||||| ++||++++.+|+++++|||
T Consensus 94 ~~~~~~~-------~~~----~~~~~~--------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 94 LENVIFC-------HQG----ESNWPL--------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hhceeee-------chH----HHHHHH--------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 8888542 111 222222 33568999999996 7899999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 208 TSGLDSTSAL-QIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 208 tsgLD~~~~~-~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
|++||+.++. .+.+.|++++++.|.|||++||+++ ..+.+|+++.|.+
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999 9999999997644889999999975 4578999999964
No 379
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=1.4e-26 Score=246.95 Aligned_cols=221 Identities=24% Similarity=0.387 Sum_probs=190.3
Q ss_pred hhhhhcccccccccc-cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcC----Cch-hhcc
Q 006505 43 EELSKLEEAADSDGV-RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI----DKA-QFRK 116 (643)
Q Consensus 43 ~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~----~~~-~~~~ 116 (643)
.+++++++++.+... .+.+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++.+|+|.++|+++ +.. ..+.
T Consensus 255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 457788998766654 5789999999999999999999999999999999999988889999999996 233 3345
Q ss_pred cEEEEccCC---CCCCCCCHHHHHHHHHHhc-----CC-CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 117 VSGYVTQRD---TLFPLLTVEETLMFSAKLR-----LR-LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 117 ~i~yv~Q~~---~l~~~lTv~E~l~~~~~~~-----~~-~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
.++|||+|. .+.+.+|+.||+.+...-+ .+ ...+..++.+.++++++++.... . ..+.+.||||++|
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~-~---~~~a~~LSGGNqQ 410 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPS-P---DAPARSLSGGNQQ 410 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCC-C---CcchhhcCCccee
Confidence 689999985 5788999999998865432 11 14566778899999999986322 1 3467899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVD 267 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 267 (643)
|+-+||+|..+|++|+..+||.|||..+...+.+.|.+.+++ |+.|++++-|++ |+++++|||.+|.+|+++...+++
T Consensus 411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLD-Eil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA-GKAVLLISEDLD-EILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhc-CCEEEEEehhHH-HHHHhhheeeeeeCCceecccccc
Confidence 999999999999999999999999999999999999999885 999999999997 799999999999999999888877
Q ss_pred HH
Q 006505 268 LL 269 (643)
Q Consensus 268 ~~ 269 (643)
++
T Consensus 489 ~~ 490 (501)
T COG3845 489 EA 490 (501)
T ss_pred cC
Confidence 63
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=1.6e-26 Score=231.33 Aligned_cols=190 Identities=18% Similarity=0.180 Sum_probs=131.9
Q ss_pred hcccccccccccceeeceEEEEe-cCeEEEEECCCCCCHHHHHHHHhcCC-CCCccEEEECC--CcCCchhhcccEEEEc
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAK-PWEILAIVGPSGAGKSSLLEILAGKL-TPQSGSTFVNG--SPIDKAQFRKVSGYVT 122 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIlG~nGaGKSTLL~~l~g~~-~~~~G~I~~~g--~~~~~~~~~~~i~yv~ 122 (643)
+++|.. +|... ++++|... +|++++|+|||||||||||++|++.+ .+..+....+. ..+.....+..+++++
T Consensus 7 ~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f 82 (213)
T cd03279 7 ELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTF 82 (213)
T ss_pred EEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEE
Confidence 345554 44433 56666644 58999999999999999999999643 33334333321 1112223455689999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc-----
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH----- 197 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~----- 197 (643)
|++.... ++.+.. ..+.++..+.+ .++..++.+.. ++.+..||||||||++||++|+.
T Consensus 83 ~~~~~~~--~~~r~~--------gl~~~~~~~~~--~l~~g~l~~~l-----~~~~~~lS~G~~~r~~la~al~~~p~~~ 145 (213)
T cd03279 83 QLGGKKY--RVERSR--------GLDYDQFTRIV--LLPQGEFDRFL-----ARPVSTLSGGETFLASLSLALALSEVLQ 145 (213)
T ss_pred EECCeEE--EEEEec--------CCCHHHHHHhh--hhhhcchHHHh-----cCCccccCHHHHHHHHHHHHHHhHHHhh
Confidence 9863211 111111 12222222111 23333444444 45778999999999999999985
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 198 -----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 198 -----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
+|++++|||||+|||+.+...+.+.|++++++ |.|||++||+++ .+...+|+++++++|.
T Consensus 146 ~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 146 NRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred hccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 57899999999999999999999999999764 899999999997 4778899999999875
No 381
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.1e-27 Score=245.29 Aligned_cols=206 Identities=21% Similarity=0.316 Sum_probs=171.1
Q ss_pred hhhhccccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEE
Q 006505 44 ELSKLEEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSG 119 (643)
Q Consensus 44 ~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~ 119 (643)
+-++++|+...|... .-+..||++|++||++-|+|.||||||||++.|.|+++|++|+|++||+|++. +++|+..+
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfS 400 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHH
Confidence 446677777777554 56889999999999999999999999999999999999999999999999965 57888888
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
-|+-|-.+|+.+=-.|+ +...+.++..|+++.+.+...-+-|+-..-.||.|||||+++-.||+-+.
T Consensus 401 avFsDyhLF~~ll~~e~-------------~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR 467 (546)
T COG4615 401 AVFSDYHLFDQLLGPEG-------------KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEER 467 (546)
T ss_pred HHhhhHhhhHhhhCCcc-------------CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhC
Confidence 88888888876322221 11235678888888887644322223345689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
+|+++||=-+.-||.-++.+.+.+--+-++.|+||+.+|||- .-+.++||++.+++|++++.-
T Consensus 468 ~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 468 DILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred CeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999998887766666799999999995 468999999999999998764
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=1.4e-25 Score=273.65 Aligned_cols=204 Identities=22% Similarity=0.383 Sum_probs=152.9
Q ss_pred ceeeceEEEEecCeEEEEECCCCCCHHHHHH---------HHhcCCCCCc----cE----EEECCCcCCc----------
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLE---------ILAGKLTPQS----GS----TFVNGSPIDK---------- 111 (643)
Q Consensus 59 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~---------~l~g~~~~~~----G~----I~~~g~~~~~---------- 111 (643)
..|+|+|++|++||+++|.|+||||||||++ .|.|...+.. +. |.+|..++..
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~ 688 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYI 688 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeeh
Confidence 4799999999999999999999999999999 5556432211 11 2333333211
Q ss_pred ---hhhc---------cc-----EEEEccC--------------------------------------CCCCCCCCHHHH
Q 006505 112 ---AQFR---------KV-----SGYVTQR--------------------------------------DTLFPLLTVEET 136 (643)
Q Consensus 112 ---~~~~---------~~-----i~yv~Q~--------------------------------------~~l~~~lTv~E~ 136 (643)
..+| +. ..|.++. ...+...||.|+
T Consensus 689 g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~ev 768 (1809)
T PRK00635 689 KAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADI 768 (1809)
T ss_pred hhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHH
Confidence 0111 00 1122221 124667899999
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHcCChhh-hhhhcCCCcCCCCCHHHHHHHHHHHHHh---cCCCEEEEeCCCCC
Q 006505 137 LMFSAKLRL--RLPQAQLRARVKSLVKELGLEHV-AMARVGDDRVRGISGGERRRVSIGFDVI---HDPKVLILDEPTSG 210 (643)
Q Consensus 137 l~~~~~~~~--~~~~~~~~~~v~~~l~~lgl~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~---~~p~illlDEPtsg 210 (643)
|.++..-.. ....++..+++ ++++.+||.+. . ++.+.+||||||||++||++|+ .+|++++|||||+|
T Consensus 769 L~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l-----~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsG 842 (1809)
T PRK00635 769 LEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPL-----GRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTG 842 (1809)
T ss_pred HHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhh-----cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCC
Confidence 988654221 11234455566 58899999764 4 4467899999999999999998 69999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe------CCeEEEecChhHHHH
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA------NGSVLHHGTVDLLSV 271 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 271 (643)
||+.+...+++.|++++++ |.|||+++|+++ .+ +.+|++++|. +|+++..|+++++..
T Consensus 843 LD~~~~~~Ll~lL~~L~~~-G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 843 LHTHDIKALIYVLQSLTHQ-GHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9999999999999999875 999999999997 35 8999999996 789999999988753
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=3.5e-25 Score=260.28 Aligned_cols=125 Identities=29% Similarity=0.464 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChh-hhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC---CEEEEeC
Q 006505 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEH-VAMARVGDDRVRGISGGERRRVSIGFDVIHDP---KVLILDE 206 (643)
Q Consensus 131 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~-~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p---~illlDE 206 (643)
+||.|++.|...+. + ..+..+.++.+||.. .. ++.+.+||||||||+.||++|+.+| ++++|||
T Consensus 792 ltv~E~l~~f~~~~----~---i~~~l~~L~~vgL~~l~l-----~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDE 859 (943)
T PRK00349 792 MTVEEALEFFEAIP----K---IARKLQTLVDVGLGYIKL-----GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDE 859 (943)
T ss_pred CcHHHHHHHHHhch----h---hhHHHHHHHHCCCCcccc-----cCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEEC
Confidence 78999998875532 1 123467899999975 23 4467899999999999999999999 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEecChhHHH
Q 006505 207 PTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHGTVDLLS 270 (643)
Q Consensus 207 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 270 (643)
||+|||+.+...+++.|+++.++ |.|||+++|+++. + +.+|+|+.| ++|++++.|+++++.
T Consensus 860 PtsGLD~~~~~~L~~~L~~l~~~-G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 860 PTTGLHFEDIRKLLEVLHRLVDK-GNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999864 9999999999963 4 689999999 789999999998875
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.92 E-value=4e-25 Score=244.83 Aligned_cols=195 Identities=29% Similarity=0.337 Sum_probs=160.3
Q ss_pred hhhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEc
Q 006505 44 ELSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVT 122 (643)
Q Consensus 44 ~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~ 122 (643)
..++++|++...+ ++..|++.++.+++||-+.|.||||||||||+|+|+|+.+-.+|+|..- -...+-|+|
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P--------~~~~~lflp 462 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP--------ADSALLFLP 462 (604)
T ss_pred ceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--------CCCceEEec
Confidence 4567888866543 4689999999999999999999999999999999999999989988552 123478999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcC-CCcCCCCCHHHHHHHHHHHHHhcCCCE
Q 006505 123 QRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG-DDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 123 Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg-~~~~~~LSGGerqRv~ia~aL~~~p~i 201 (643)
|.|.+... |.+|-+.++.... +-.++.+.++|.++||.+..++.-. ++--+.||+|||||+++||.|+++|++
T Consensus 463 Q~PY~p~G-tLre~l~YP~~~~-----~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~ 536 (604)
T COG4178 463 QRPYLPQG-TLREALCYPNAAP-----DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKW 536 (604)
T ss_pred CCCCCCCc-cHHHHHhCCCCCC-----CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCE
Confidence 99998888 9999998754321 1234568899999999987755322 224568999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
++|||.|++||+.+...+.+++++-. .+.|||.+.|.+. +..+.++.+-+.
T Consensus 537 v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 537 VFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred EEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchh--hHHHHhhheeec
Confidence 99999999999999999999998854 4899999999985 567777765554
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=2.5e-25 Score=212.79 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=172.2
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC----ccEEEECCCcC---Cchhhc----ccEEEEcc
Q 006505 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ----SGSTFVNGSPI---DKAQFR----KVSGYVTQ 123 (643)
Q Consensus 55 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~----~G~I~~~g~~~---~~~~~~----~~i~yv~Q 123 (643)
.|...++++||+++.+||+-+++|.||||||-..|+|+|..+.. .-...+++.++ ++++.| +.+++++|
T Consensus 17 qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQ 96 (330)
T COG4170 17 QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhc
Confidence 46667999999999999999999999999999999999997643 44556676654 223333 45689999
Q ss_pred CCC--CCCCCCHHHHHHHHHHh--cCCC---CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh
Q 006505 124 RDT--LFPLLTVEETLMFSAKL--RLRL---PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI 196 (643)
Q Consensus 124 ~~~--l~~~lTv~E~l~~~~~~--~~~~---~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~ 196 (643)
++. +-|.-+|...|.-..-. ..+. .-.-+++++-++|.++|+.+..|-. ..++.+|--||-|+|.||.|++
T Consensus 97 eP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ElTeGE~QKVMIA~A~A 174 (330)
T COG4170 97 EPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIALA 174 (330)
T ss_pred CchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcchhccCcceeeeeehhhc
Confidence 974 56655665544322110 0010 0112356788999999998766543 5689999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHHH
Q 006505 197 HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 197 ~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 271 (643)
.+|++|+.||||+.+|+.++.++.++|.++.+..|.||++++||.. .+-++||++-||.-|+-++.++.+++.+
T Consensus 175 nqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 175 NQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred cCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999999888999999999997 4999999999999999999999888764
No 386
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=3.9e-24 Score=224.84 Aligned_cols=185 Identities=24% Similarity=0.327 Sum_probs=148.2
Q ss_pred ccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCC
Q 006505 49 EEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLF 128 (643)
Q Consensus 49 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~ 128 (643)
.++.+.++. .-|+-=.+++..||+++++||||-||||+.++|+|.++|++|+ ..+ -.++|=||--.--
T Consensus 346 ~~~~k~~g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~-------~~vSyKPQyI~~~ 413 (591)
T COG1245 346 PDLKKTYGD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED-------LKVSYKPQYISPD 413 (591)
T ss_pred chheeecCc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc-------ceEeecceeecCC
Confidence 445556653 3455556777888999999999999999999999999999987 111 2378888864333
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 006505 129 PLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPT 208 (643)
Q Consensus 129 ~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPt 208 (643)
...||++-+.-...-... ......++++-|.|++..++ .+.+|||||.|||+||.+|..++++++||||+
T Consensus 414 ~~gtV~~~l~~~~~~~~~-----~s~~~~ei~~pl~l~~i~e~-----~v~~LSGGELQRvaIaa~L~reADlYllDEPS 483 (591)
T COG1245 414 YDGTVEDLLRSAIRSAFG-----SSYFKTEIVKPLNLEDLLER-----PVDELSGGELQRVAIAAALSREADLYLLDEPS 483 (591)
T ss_pred CCCcHHHHHHHhhhhhcc-----cchhHHhhcCccchHHHHhc-----ccccCCchhHHHHHHHHHhccccCEEEecCch
Confidence 445999988654332111 11234578888999888844 66799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 209 SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 209 sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
+.||.+.+..+.+.+++.....++|.+++.||.-. +--++||+++.+
T Consensus 484 A~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 484 AYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred hhccHHHHHHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 99999999999999999999889999999999864 555789999885
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=5e-25 Score=236.10 Aligned_cols=204 Identities=24% Similarity=0.326 Sum_probs=164.0
Q ss_pred hhhhhhccccccccccc-ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEE
Q 006505 42 QEELSKLEEAADSDGVR-RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGY 120 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~y 120 (643)
+.+.+.+.|+..+|..+ .++++++|-+.+++.+|++||||+|||||||++.|.+.|..|.|.-.-. ..+++
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H--------~~~~~ 457 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH--------NKLPR 457 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc--------ccchh
Confidence 45677888998888766 6999999999999999999999999999999999999999998854322 22344
Q ss_pred EccC--CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 121 VTQR--DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 121 v~Q~--~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
-.|+ +.+.-..++-|++.=.. +.+...+.+..++.++||....+ +.+++.||+|||+||..|+.++..
T Consensus 458 y~Qh~~e~ldl~~s~le~~~~~~------~~~~~~e~~r~ilgrfgLtgd~q----~~p~~~LS~Gqr~rVlFa~l~~kq 527 (614)
T KOG0927|consen 458 YNQHLAEQLDLDKSSLEFMMPKF------PDEKELEEMRSILGRFGLTGDAQ----VVPMSQLSDGQRRRVLFARLAVKQ 527 (614)
T ss_pred hhhhhHhhcCcchhHHHHHHHhc------cccchHHHHHHHHHHhCCCcccc----ccchhhcccccchhHHHHHHHhcC
Confidence 4554 34444567777765221 11234567889999999985432 347889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE-EEecChhH
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV-LHHGTVDL 268 (643)
Q Consensus 199 p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~ 268 (643)
|.+|+|||||+|||..+...+-+.|.+. .-+||++|||... +.++++++.+..+|.+ .+.|+...
T Consensus 528 P~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 528 PHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred CcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeeechhhH-HHHHHHHhHhhccCceeecCccHHH
Confidence 9999999999999999999999998765 4589999999985 8899999999988765 45565443
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=1.2e-24 Score=233.17 Aligned_cols=214 Identities=22% Similarity=0.355 Sum_probs=150.0
Q ss_pred hhhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccE--EEECCCcCCchh---h-----
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS--TFVNGSPIDKAQ---F----- 114 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~--I~~~g~~~~~~~---~----- 114 (643)
-+++++++..+.++.+++|+++++.+|+-++|+|+|||||||+|++|+|...|..-+ ++.-.+++.+.. .
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~ 154 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVM 154 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhh
Confidence 357889999999999999999999999999999999999999999999999886322 222223221110 0
Q ss_pred -----cccEEEEccCCCCC-CCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCh-hhhhhhcCCCcCCCCCHHHH
Q 006505 115 -----RKVSGYVTQRDTLF-PLLTVEETLMFSAKLRL-RLPQAQLRARVKSLVKELGLE-HVAMARVGDDRVRGISGGER 186 (643)
Q Consensus 115 -----~~~i~yv~Q~~~l~-~~lTv~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgl~-~~~~~~vg~~~~~~LSGGer 186 (643)
++++.|..++-... +. --.+.+.-. ..|. ....+..+.++.++|..+|.. +..+ +.+.++|||+|
T Consensus 155 ~~~~e~~rle~~~E~l~~~~d~-~~~~~l~~~-~~r~~~~d~~~~~~k~~~il~glgf~~~m~~-----k~~~~~SgGwr 227 (614)
T KOG0927|consen 155 ETDHERKRLEYLAEDLAQACDD-KEKDELDEL-YERLDEMDNDTFEAKAAKILHGLGFLSEMQD-----KKVKDLSGGWR 227 (614)
T ss_pred hhHHHHHHHHHHHHHHHhhccc-hhhhHHHHH-HHHHHhhCchhHHHHHHHHHHhcCCCHhHHH-----HHhhccCchHH
Confidence 11111111100000 00 000000000 0000 112233455666777777753 4443 36689999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC-EEEEEecCCchHHHhhcCEEEEEeCCe-EEEec
Q 006505 187 RRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGR-TVILSIHQPGFRIVKMFNSILMLANGS-VLHHG 264 (643)
Q Consensus 187 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~-tvi~~~H~~~~~i~~~~D~v~~L~~G~-iv~~G 264 (643)
.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+. .+ ++++++|.-+. +-.+|.+|+-|++++ +.|.|
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~----d~~~lVi~sh~QDf-ln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY----DRIILVIVSHSQDF-LNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc----cCceEEEEecchhh-hhhHhhhhheecccceeeecC
Confidence 9999999999999999999999999999999999988775 33 89999999874 889999999999999 66778
Q ss_pred ChhHHH
Q 006505 265 TVDLLS 270 (643)
Q Consensus 265 ~~~~~~ 270 (643)
+.++..
T Consensus 303 nydqy~ 308 (614)
T KOG0927|consen 303 NYDQYV 308 (614)
T ss_pred CHHHHh
Confidence 877654
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.2e-23 Score=247.13 Aligned_cols=125 Identities=26% Similarity=0.441 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhh-hhhhcCCCcCCCCCHHHHHHHHHHHHHhc---CCCEEEEe
Q 006505 130 LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHV-AMARVGDDRVRGISGGERRRVSIGFDVIH---DPKVLILD 205 (643)
Q Consensus 130 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~---~p~illlD 205 (643)
.+||.|.+.|...+.. ..+..++++.+||... . ++.+.+|||||+||+.||++|+. +|++++||
T Consensus 789 ~~tv~e~~~f~~~~~~-------i~~~l~~L~~~gL~~l~l-----~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILD 856 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS-------ISRKLQTLCDVGLGYIKL-----GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILD 856 (924)
T ss_pred CCcHHHHHHHHHhccc-------hhHHHHHHHHcCCCchhh-----cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEE
Confidence 3577777777654320 1234578889999642 3 45678999999999999999997 59999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEecChhHH
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHGTVDLL 269 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 269 (643)
|||+|||+.++..+.+.|+++.++ |.|||+++|+++. + +.+|++++| ++|++++.|+++++
T Consensus 857 EPtsgLD~~~~~~L~~~L~~l~~~-G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 857 EPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999864 9999999999963 4 679999999 79999999998764
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=3.3e-24 Score=212.07 Aligned_cols=172 Identities=17% Similarity=0.180 Sum_probs=124.6
Q ss_pred eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcC----CchhhcccEEEEccCCCCCCCCCHHH
Q 006505 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI----DKAQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 60 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~----~~~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
-++++++++.+| +.+|+|||||||||||.+|......... ...-|... ....-...+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~----- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN----- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC-----
Confidence 346788888888 8899999999999999999743322211 00112211 111123457788887665551
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCC
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV----IHDPKVLILDEPTSGL 211 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL----~~~p~illlDEPtsgL 211 (643)
+ .....+++++++++. .+.. +++++.||+|||||++||+++ +.+|++++|||||+||
T Consensus 84 ----------~-~~~~~~~~~~~~l~~---~~~~-----~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~gl 144 (198)
T cd03276 84 ----------P-LCVLSQDMARSFLTS---NKAA-----VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFM 144 (198)
T ss_pred ----------c-CCHHHHHHHHHHhcc---cccc-----CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCccccc
Confidence 1 111123567777776 3333 457789999999999999999 5899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh--CCCEEEEEecCCchHHHhhcCEEEEEeCCe
Q 006505 212 DSTSALQIIDMLKVMAET--RGRTVILSIHQPGFRIVKMFNSILMLANGS 259 (643)
Q Consensus 212 D~~~~~~i~~~L~~l~~~--~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 259 (643)
|+.++..+.+.|++++++ .+.|||+++|+++ ++.++ |+|.+|..|+
T Consensus 145 D~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 145 DMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLASS-DDVKVFRMKD 192 (198)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-ccccc-cceeEEEecC
Confidence 999999999999998654 2468999999997 46655 9999998765
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=2.7e-24 Score=220.12 Aligned_cols=181 Identities=14% Similarity=0.169 Sum_probs=123.1
Q ss_pred ecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCc-C-Cc--------hhhcccEEEEccCCCC-CCCCCHHHHH
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSP-I-DK--------AQFRKVSGYVTQRDTL-FPLLTVEETL 137 (643)
Q Consensus 69 ~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~-~-~~--------~~~~~~i~yv~Q~~~l-~~~lTv~E~l 137 (643)
.++ +++|+|||||||||||++|++...+..|++..++.. . .. ....-.+.|..|++.. .-..++++..
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 344 999999999999999999999987777777654421 1 00 0112223444444321 1111222111
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhh---------hhcCC--------CcCCCCCHHHHHHHHHHHHHhcC--
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAM---------ARVGD--------DRVRGISGGERRRVSIGFDVIHD-- 198 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~---------~~vg~--------~~~~~LSGGerqRv~ia~aL~~~-- 198 (643)
. ..+... +....+.++++++.+|+..... +.+.+ ..+..||||||||++||++++.+
T Consensus 100 ~---~~~ing-k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 100 S---SYRING-KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred e---EEEECC-EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhcc
Confidence 0 001111 1112345678889899853211 11112 23489999999999999999875
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 199 --PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 199 --p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
|+++++||||+|||+.++..+.+.|++++++ |.+||++||++ ++.+.+|++++|..
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 8999999999999999999999999999864 89999999996 46789999999964
No 392
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.89 E-value=9.9e-25 Score=215.26 Aligned_cols=208 Identities=23% Similarity=0.379 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhh
Q 006505 365 KETIILTHRFSKNIFRTKELF-ACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSCTT-EALPIFLQER 442 (643)
Q Consensus 365 ~Q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~~~-~~~~~f~~er 442 (643)
+|++.+++|+++..+|||.+. ..+++..+++++++|.+|.+++++.++. ++.|++++.+...++... +....+..||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 9999999999999999999998555555 778888887777764444 3447888999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 006505 443 EILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPN 522 (643)
Q Consensus 443 ~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~ 522 (643)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..+++.++|.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999988 77888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhh
Q 006505 523 FIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEF 575 (643)
Q Consensus 523 ~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef 575 (643)
...+..+.+++..+++++||.+.|.+.+|+|++|+.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999886
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.4e-22 Score=211.28 Aligned_cols=193 Identities=28% Similarity=0.397 Sum_probs=156.3
Q ss_pred hhhhhhhcccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEE
Q 006505 41 AQEELSKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119 (643)
Q Consensus 41 ~~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~ 119 (643)
...|++-+.+++..| +.++++++++|-|.-...+||+||||.||||||++|.|-+.|..|+..-| .|-+||
T Consensus 582 L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn--------hrL~iG 653 (807)
T KOG0066|consen 582 LNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN--------HRLRIG 653 (807)
T ss_pred CCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc--------ceeeee
Confidence 445677888999898 77889999999999999999999999999999999999999999987433 345689
Q ss_pred EEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc
Q 006505 120 YVTQRD--TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 120 yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~ 197 (643)
+.-|.. .|-..-|.-|.|.-.. .+ +. +.+...|-.+||...++|. .+..||||||-||++|.--+.
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~F--Nl--py----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKF--NL--PY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALG 721 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhc--CC--Ch----HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcC
Confidence 888863 4555667777775332 22 22 3455778899998777764 578999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCC
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANG 258 (643)
Q Consensus 198 ~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 258 (643)
.|++|||||||++||..+...+.+.|++. +-.||+++||-+. +.+.--.++|+.+.
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccce-eeecCceEEEEccC
Confidence 99999999999999999999999998775 4579999999875 55544466666553
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.88 E-value=4.4e-22 Score=190.26 Aligned_cols=209 Identities=23% Similarity=0.304 Sum_probs=165.1
Q ss_pred hhhccccccccc-ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc------------
Q 006505 45 LSKLEEAADSDG-VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------------ 111 (643)
Q Consensus 45 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~------------ 111 (643)
.++++++..+|. ..+++-|+|++++.|..+.++|.||||||||||+|+|..-...|.|.++|++.-.
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~Y 92 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSY 92 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeE
Confidence 467888888875 3589999999999999999999999999999999999987778999999987521
Q ss_pred --hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHH
Q 006505 112 --AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRV 189 (643)
Q Consensus 112 --~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv 189 (643)
.+|.+.++.-- +-.+-...++.+-| |+..- .+ -++-+++++.|+++- ..+...+|-|||+||
T Consensus 93 LGgeW~~~~~~ag-evplq~D~sae~mi-fgV~g----~d---p~Rre~LI~iLDIdl-------~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 93 LGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVGG----DD---PERREKLIDILDIDL-------RWRMHKVSDGQRRRV 156 (291)
T ss_pred ecccccccccccc-cccccccccHHHHH-hhccC----CC---hhHhhhhhhheeccc-------eEEEeeccccchhhh
Confidence 12333333333 21222345665543 44321 11 145567777777653 235678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 190 SIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 190 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
.|+..|++.=++|+|||-|-.||..++.++++.+++-++++|.||+..||-.+- +..+..+++.+++|+++-.-+.++.
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecCCeeeeccccchh
Confidence 999999999999999999999999999999999999999999999999999874 8899999999999999875555444
Q ss_pred H
Q 006505 270 S 270 (643)
Q Consensus 270 ~ 270 (643)
.
T Consensus 236 ~ 236 (291)
T KOG2355|consen 236 K 236 (291)
T ss_pred h
Confidence 3
No 395
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.87 E-value=6.8e-22 Score=213.56 Aligned_cols=202 Identities=23% Similarity=0.262 Sum_probs=158.8
Q ss_pred hhhhccccccccc--ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEE
Q 006505 44 ELSKLEEAADSDG--VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYV 121 (643)
Q Consensus 44 ~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv 121 (643)
..+++++++.... +..+++|+|++|+.|+-+.|.||||||||+|||+++|+.+..+|.+.--.+.-. +.+-|+
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~-----~~lffl 506 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP-----KDLFFL 506 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-----CceEEe
Confidence 4556666654443 456788899999999999999999999999999999999989999975433211 457899
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcC------CCcCCCCCHHHHHHHHHHHHH
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVG------DDRVRGISGGERRRVSIGFDV 195 (643)
Q Consensus 122 ~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg------~~~~~~LSGGerqRv~ia~aL 195 (643)
||.|.+.-+ |.||.+.|+..--.+..+...++++.+.|+.++|.|..+..=| -+....||+||+||++.||.+
T Consensus 507 PQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 507 PQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred cCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 999987766 9999998874321122222234577888888888877643211 123567999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
.++|++-+|||.||++|......+.+.+++ .|.|.|-+.|..+ +.+.=|.++-|+.
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999999999999888887765 4999999999986 5677788888864
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.1e-22 Score=217.19 Aligned_cols=202 Identities=20% Similarity=0.300 Sum_probs=147.2
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD 125 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~ 125 (643)
+.+++....||.+.+|++-++++..|.-++++||||+|||||||+|+. |+|. |-++. ++.+ --+++-..
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~--~f~ve-qE~~--g~~t~~~~ 149 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVS--GFHVE-QEVR--GDDTEALQ 149 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcC--ccCch-hhee--ccchHHHh
Confidence 456778889999999999999999999999999999999999999997 3332 22321 1121 12444332
Q ss_pred CCCCCCCHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 126 TLFPLLTVEETLMF-SAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 126 ~l~~~lTv~E~l~~-~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
......|.++.+.. -..+. ...+.++...++|..+|.++... .++.+++|||=|-|+++||||..+|+||||
T Consensus 150 ~~l~~D~~~~dfl~~e~~l~---~~~~l~ei~~~~L~glGFt~emq----~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 150 SVLESDTERLDFLAEEKELL---AGLTLEEIYDKILAGLGFTPEMQ----LQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred hhhhccHHHHHHHHhhhhhh---ccchHHHHHHHHHHhCCCCHHHH----hccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 22222244443322 11111 11123344455899999876442 347789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE-EEecChhHHH
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV-LHHGTVDLLS 270 (643)
Q Consensus 205 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~~~ 270 (643)
||||+.||..+..-+-+.|+.+ +.|+|++|||-+. +-..|..|+-+++-++ .|.|+.++..
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~F-Ln~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNF-LNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhC----CceEEEEeccHHH-HHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 9999999999999999988764 5899999999775 7778888888877665 4667766654
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=1.9e-21 Score=204.68 Aligned_cols=170 Identities=32% Similarity=0.478 Sum_probs=128.8
Q ss_pred EecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch---h---------hcc------cEEEEcc----CC
Q 006505 68 AKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA---Q---------FRK------VSGYVTQ----RD 125 (643)
Q Consensus 68 i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~---~---------~~~------~i~yv~Q----~~ 125 (643)
.++|++++|+||||-||||-+|+|+|.+.|.=|+- ++.|-..+ . +++ ++..=+| -+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 57999999999999999999999999999986642 33221110 0 110 1122222 22
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
..+.. ||.|-|.- .+.+-..+++.+.|+|++..|+ .+++|||||-||++||.+++++++++++|
T Consensus 175 k~~KG-~v~elLk~----------~de~g~~devve~l~L~nvl~r-----~v~~LSGGELQr~aIaa~l~rdADvY~FD 238 (591)
T COG1245 175 KVVKG-KVGELLKK----------VDERGKFDEVVERLGLENVLDR-----DVSELSGGELQRVAIAAALLRDADVYFFD 238 (591)
T ss_pred HHhcc-hHHHHHHh----------hhhcCcHHHHHHHhcchhhhhh-----hhhhcCchHHHHHHHHHHHhccCCEEEEc
Confidence 22333 56555431 1112357889999999998855 56799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
||||-||...+....+.++++++. +++||++.||+.. +--++|-|.++..
T Consensus 239 EpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 239 EPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred CCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHH-HHHhhheeEEEec
Confidence 999999999999999999999985 8999999999862 4446899988863
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.85 E-value=2e-21 Score=192.57 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=111.0
Q ss_pred eeeceEEEEecCe-EEEEECCCCCCHHHHHHHHh--------cCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCC
Q 006505 60 VLDGVSCKAKPWE-ILAIVGPSGAGKSSLLEILA--------GKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPL 130 (643)
Q Consensus 60 iL~~vs~~i~~Ge-~~aIlG~nGaGKSTLL~~l~--------g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 130 (643)
-.-++|+++.+|+ +++|.||||||||||||+|+ |..-|.... ..++|+.|.-..
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~--------------~~~~~~~~~~~~--- 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG--------------SSLPVFENIFAD--- 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc--------------ccCcCccEEEEe---
Confidence 3558999999995 89999999999999999998 433332100 113333332111
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 006505 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSG 210 (643)
Q Consensus 131 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsg 210 (643)
++.++.. +.....+|+||||++.++++ +.+|+++++|||++|
T Consensus 79 --------------------------------lg~~~~l-----~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~g 120 (200)
T cd03280 79 --------------------------------IGDEQSI-----EQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSG 120 (200)
T ss_pred --------------------------------cCchhhh-----hcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCC
Confidence 1111111 22346899999999999987 489999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEec
Q 006505 211 LDSTSALQII-DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHG 264 (643)
Q Consensus 211 LD~~~~~~i~-~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 264 (643)
||+.....+. ..++++.+ .|.|+|++||+. ++.+++|++..|++|++.+.+
T Consensus 121 lD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 121 TDPVEGAALAIAILEELLE-RGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCHHHHHHHHHHHHHHHHh-cCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999999996 46788765 489999999984 578999999999999998874
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.9e-21 Score=205.37 Aligned_cols=199 Identities=25% Similarity=0.316 Sum_probs=161.6
Q ss_pred hhhhhhcccccccccccc--eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEE
Q 006505 42 QEELSKLEEAADSDGVRR--VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG 119 (643)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~ 119 (643)
..|.+++..+...|.... ++.+++..++.-+-.+++|+||+||||++|++.|-..|..|.+.+++ |.+++
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~--------r~ri~ 430 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP--------RLRIK 430 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc--------cceec
Confidence 346778888888886655 99999999999999999999999999999999999999999887653 45688
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p 199 (643)
|-.|...=+-.+.|.+ +.+..+.+-+.+ ++.+++-+..+||+... ..+.+.+||||||-||++|.....+|
T Consensus 431 ~f~Qhhvd~l~~~v~~-vd~~~~~~pG~~----~ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrvafA~~~~~~P 501 (582)
T KOG0062|consen 431 YFAQHHVDFLDKNVNA-VDFMEKSFPGKT----EEEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVAFAACTWNNP 501 (582)
T ss_pred chhHhhhhHHHHHhHH-HHHHHHhCCCCC----HHHHHHHHHhcCCCchh----hhccccccCCcchhHHHHHHHhcCCC
Confidence 9999754333344433 333344443333 34567888999997432 13357899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH 262 (643)
Q Consensus 200 ~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 262 (643)
.+|+|||||+.||..+-..+.+.|+.. +-.||++|||.+. +...|+.+.+.++|++.-
T Consensus 502 hlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 502 HLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEECcHHH-HhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999875 4479999999885 888999999999999864
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=4.8e-21 Score=191.59 Aligned_cols=168 Identities=23% Similarity=0.319 Sum_probs=110.1
Q ss_pred eceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-------------------ccEE--EECCCcCCchhhcccEEE
Q 006505 62 DGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-------------------SGST--FVNGSPIDKAQFRKVSGY 120 (643)
Q Consensus 62 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-------------------~G~I--~~~g~~~~~~~~~~~i~y 120 (643)
+++.+.+.+| +.+|+|||||||||||.+|.-..-.. ++.| .+++.+. ...++..+.+
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~-~~~~~n~~~~ 92 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPG-NIQVDNLCQF 92 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCC-ccccCCceEE
Confidence 5566676666 88999999999999999987544211 1111 1111000 0112222334
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH----
Q 006505 121 VTQRDT-LFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV---- 195 (643)
Q Consensus 121 v~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL---- 195 (643)
++|+.. -+..+++.|.+ ..++-. ..+.+..+.+||||||||+.++.+|
T Consensus 93 ~~q~~~~~~~~~~~~e~l-----------------------~~~~~~----~~~~~~~~~~LS~G~~q~~~i~~~la~~~ 145 (213)
T cd03277 93 LPQDRVGEFAKLSPIELL-----------------------VKFREG----EQLQELDPHHQSGGERSVSTMLYLLSLQE 145 (213)
T ss_pred EchHHHHHHHhCChHhHh-----------------------eeeecC----CCccccchhhccccHHHHHHHHHHHHHHh
Confidence 555432 23333443332 111100 0011335679999999998877554
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhhcC--EEEEEeCCe
Q 006505 196 IHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG-RTVILSIHQPGFRIVKMFN--SILMLANGS 259 (643)
Q Consensus 196 ~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g-~tvi~~~H~~~~~i~~~~D--~v~~L~~G~ 259 (643)
+.+|+++++||||+|||+.++..+++.|++++++.| .|+|++||++.. ..+.+| +|++|++|+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEEecCc
Confidence 589999999999999999999999999999976434 589999999863 667776 788888886
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.84 E-value=8.9e-21 Score=197.44 Aligned_cols=186 Identities=25% Similarity=0.377 Sum_probs=147.0
Q ss_pred ccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcC--------CCCCccEEEECCCcCCchhhcccEEEEccCC-
Q 006505 55 DGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK--------LTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD- 125 (643)
Q Consensus 55 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~--------~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~- 125 (643)
.....+|+|+|++++||++++|+|+|||||||||++|+|. ++|++|.|.+--.. ..+.+|-+.
T Consensus 393 ~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~E 464 (593)
T COG2401 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYE 464 (593)
T ss_pred eeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccc
Confidence 3456799999999999999999999999999999999996 45778888663211 235566542
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.-|..-|+.|.+.- ... +.....++|++.|+.+..- -....++||-|||.|+.||.++...|.+++.|
T Consensus 465 p~f~~~tilehl~s-----~tG----D~~~AveILnraGlsDAvl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 465 PEFGEVTILEHLRS-----KTG----DLNAAVEILNRAGLSDAVL---YRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cccCchhHHHHHhh-----ccC----chhHHHHHHHhhccchhhh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 23445677776631 111 1234668999999975331 13467899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCEEEEEeCCeEE
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM-FNSILMLANGSVL 261 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv 261 (643)
|--+.||+.++..+.+-+.+++++.|.|++++||.|+. +-.+ =|+++++.=|++.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccccc
Confidence 99999999999999999999999999999999999974 5556 4888888766543
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.82 E-value=2.9e-20 Score=183.96 Aligned_cols=148 Identities=19% Similarity=0.263 Sum_probs=109.3
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEET 136 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 136 (643)
++.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .+++|.+.+++.+|+.|+
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS------SFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC------ccCcccceEEEeccchhc
Confidence 346888887775 79999999999999999999988543 12355554221 366787889999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 006505 137 LMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSA 216 (643)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~ 216 (643)
+.++... ..++ .+++.++++.+++ .+|+++++|||++|+|+..+
T Consensus 80 l~~~~s~----~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 80 LRDGISY----FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred cccccCh----HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHHH
Confidence 9775321 1222 2557777776652 68999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCCEEEEEecCCchHHHhh--cCEEEEE
Q 006505 217 LQII-DMLKVMAETRGRTVILSIHQPGFRIVKM--FNSILML 255 (643)
Q Consensus 217 ~~i~-~~L~~l~~~~g~tvi~~~H~~~~~i~~~--~D~v~~L 255 (643)
..+. ..++++++ .|.|+|++||+++. +..+ .++|-.+
T Consensus 124 ~~l~~~ll~~l~~-~~~tiiivTH~~~~-~~~~~~~~~v~~~ 163 (199)
T cd03283 124 QAASAAVLKFLKN-KNTIGIISTHDLEL-ADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEcCcHHH-HHhhhcCCCeEEE
Confidence 8875 47888876 48999999999863 4433 3444443
No 403
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.81 E-value=4e-20 Score=186.08 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=118.6
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEE-EEccCCCCCCCCCHH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSG-YVTQRDTLFPLLTVE 134 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~-yv~Q~~~l~~~lTv~ 134 (643)
+.+.+.+|++++..+|++++|.||||+||||||++++-. .+..++| |||.+...++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH------------------HHHHHhCCCcCcccEEEe-----
Confidence 445789999999999999999999999999999999821 1222333 6665432221
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CC
Q 006505 135 ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV--IHDPKVLILDEP---TS 209 (643)
Q Consensus 135 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL--~~~p~illlDEP---ts 209 (643)
.+++++..+|+++. ..+++|.|+++++.+++++ +.+|+++||||| |+
T Consensus 72 --------------------~~~~il~~~~l~d~--------~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 72 --------------------IVDCILARVGASDS--------QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred --------------------ccceeEeeeccccc--------hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 12334555565532 2468999999999999999 899999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecC
Q 006505 210 GLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 210 gLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 265 (643)
+||+.+.... .++.+.++.|.++|++||+ .++.+++|++..+++|++...++
T Consensus 124 ~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9999888543 3355544348999999997 36889999999999999987764
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=4.3e-19 Score=172.59 Aligned_cols=74 Identities=22% Similarity=0.326 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 181 ISGGERRRVSIGFDVI----HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 181 LSGGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++ |.|+|+++|+++ ..+.+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~--~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKE--MFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHhhCCeEEEEE
Confidence 9999999999999996 699999999999999999999999999999864 899999999975 457899999997
Q ss_pred C
Q 006505 257 N 257 (643)
Q Consensus 257 ~ 257 (643)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.80 E-value=1.2e-18 Score=213.61 Aligned_cols=198 Identities=22% Similarity=0.317 Sum_probs=146.6
Q ss_pred ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHh----------cCCCCCccEEEECCCcCCc-------------hhhc
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILA----------GKLTPQSGSTFVNGSPIDK-------------AQFR 115 (643)
Q Consensus 59 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~----------g~~~~~~G~I~~~g~~~~~-------------~~~~ 115 (643)
.=|+||+.+|+-|.+++|.|.||||||||++-.. |. ..-+--|.+|..|+.. ..+|
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~-~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR 1582 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGP-SVFSEIIFLDSHPQISSQRSDISTYFDIAPSLR 1582 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccc-cccCcEEEEeCCCCCCCCCCchhhhhhhHHHHH
Confidence 3489999999999999999999999999997333 11 1113457777776621 0111
Q ss_pred ccE-------------------------------EEEccCCCCC--------------------------------CCCC
Q 006505 116 KVS-------------------------------GYVTQRDTLF--------------------------------PLLT 132 (643)
Q Consensus 116 ~~i-------------------------------~yv~Q~~~l~--------------------------------~~lT 132 (643)
+.. |++.=+-.++ -.||
T Consensus 1583 ~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mt 1662 (1809)
T PRK00635 1583 NFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTP 1662 (1809)
T ss_pred HHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCC
Confidence 110 1211111111 2357
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCC
Q 006505 133 VEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD---PKVLILDEPTS 209 (643)
Q Consensus 133 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~---p~illlDEPts 209 (643)
|.|.+.|.... .+-.+.-+.|..+||.-.. . ++...+|||||.||+-||.+|..+ +.+++|||||+
T Consensus 1663 v~ea~~~F~~~-------~~i~~~L~~L~~vGLgYl~---L-Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1663 IEEVAETFPFL-------KKIQKPLQALIDNGLGYLP---L-GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred HHHHHHHhhcc-------HHHHHHHHHHHHcCCCeee---C-CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 77776665321 1233456788888987543 2 567789999999999999999875 78999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe------CCeEEEecChhHHHH
Q 006505 210 GLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA------NGSVLHHGTVDLLSV 271 (643)
Q Consensus 210 gLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 271 (643)
||++.....+++.|+++.+. |.|||++.|+++ +.+.||.|+=|- .|++++.|+|+++.+
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~~-g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVSL-GHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999974 999999999984 677899999983 589999999999864
No 406
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.80 E-value=6e-20 Score=195.97 Aligned_cols=172 Identities=26% Similarity=0.375 Sum_probs=133.9
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
....++..++|.++||--+.|+||||||||+|.|+|+|+.+...|.... | .+..+-|+||.|..-.. |.+|
T Consensus 493 ~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~---P-----~~~~mFYIPQRPYms~g-tlRD 563 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI---P-----RPNNIFYIPQRPYMSGG-TLRD 563 (728)
T ss_pred CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec---C-----CCcceEeccCCCccCcC-cccc
Confidence 4456889999999999999999999999999999999999886665543 1 12348899999876533 7777
Q ss_pred HHHHHHHhcCCCCHHHH------HHHHHHHHHHcCChhhhhhhcCC----CcCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 006505 136 TLMFSAKLRLRLPQAQL------RARVKSLVKELGLEHVAMARVGD----DRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~------~~~v~~~l~~lgl~~~~~~~vg~----~~~~~LSGGerqRv~ia~aL~~~p~illlD 205 (643)
.+-++ .+.++. ++..+.+|+.+.|++...+-.|= .....||||||||++.||.+-++|+.-+||
T Consensus 564 QIIYP------dS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLD 637 (728)
T KOG0064|consen 564 QIIYP------DSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLD 637 (728)
T ss_pred eeecC------CcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhh
Confidence 77653 222221 24566788888888776554331 123469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM 248 (643)
Q Consensus 206 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~ 248 (643)
|.||+..+.....+.+..+ ..|.+.|-++|+|+ ++.+
T Consensus 638 EcTsAvsidvE~~i~~~ak----~~gi~llsithrps--lwk~ 674 (728)
T KOG0064|consen 638 ECTSAVSIDVEGKIFQAAK----DAGISLLSITHRPS--LWKY 674 (728)
T ss_pred hhhcccccchHHHHHHHHH----hcCceEEEeecCcc--HHHH
Confidence 9999999988877776654 46999999999997 4554
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.9e-18 Score=193.19 Aligned_cols=127 Identities=29% Similarity=0.493 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCC
Q 006505 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP---KVLILDEP 207 (643)
Q Consensus 131 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p---~illlDEP 207 (643)
|||.|...|.... + .-.+.-+.|..+||.-.. . .++..+|||||.|||-+|.+|.... .+++||||
T Consensus 784 MTveEA~~FF~~~----p---~I~rkLqtL~dVGLgYi~---L-GQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEP 852 (935)
T COG0178 784 MTVEEALEFFEAI----P---KIARKLQTLVDVGLGYIK---L-GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEP 852 (935)
T ss_pred ccHHHHHHHHhcc----h---HHHHHHHHHHHcCcceEe---c-CCccccccchHHHHHHHHHHHhhccCCCeEEEeCCC
Confidence 5677766665431 1 123344567777876432 2 5677899999999999999999876 89999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEecChhHHHH
Q 006505 208 TSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHGTVDLLSV 271 (643)
Q Consensus 208 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 271 (643)
|+||-.....++++.|.++.+. |.|||++.|+++ +.+.+|.|+=| ..|+++..|+|+++.+
T Consensus 853 TTGLH~~Di~kLl~VL~rLvd~-GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 853 TTGLHFDDIKKLLEVLHRLVDK-GNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999985 999999999985 78999999998 3589999999999864
No 408
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=8.4e-19 Score=182.45 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 179 RGISGGERRRVSIGFDVIH----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
..||||||||+++|++++. +|+++++||||+|||+.+...+.+.|+++++ +.|+|++||++. +.+.+|++++
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~ 244 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFL 244 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEE
Confidence 3599999999999987654 9999999999999999999999999999864 789999999985 5689999999
Q ss_pred EeCC
Q 006505 255 LANG 258 (643)
Q Consensus 255 L~~G 258 (643)
|.+|
T Consensus 245 l~~~ 248 (276)
T cd03241 245 VEKE 248 (276)
T ss_pred EEEe
Confidence 9875
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.78 E-value=9.2e-19 Score=167.76 Aligned_cols=140 Identities=21% Similarity=0.295 Sum_probs=102.1
Q ss_pred eceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHH
Q 006505 62 DGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSA 141 (643)
Q Consensus 62 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~ 141 (643)
...+..+.++.++.|+|||||||||+++++....-...|.+... ... +.-.++++....+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~------~~g~~~~~~~~~~------------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV------KAGCIVAAVSAEL------------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc------cCCCcceeeEEEE-------------
Confidence 34455555667999999999999999999876654433333221 000 0001122211111
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHH
Q 006505 142 KLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH----DPKVLILDEPTSGLDSTSAL 217 (643)
Q Consensus 142 ~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~ 217 (643)
+. ...+||+||+||+++|++|.. +|+++++|||++|+|+....
T Consensus 72 -----------------------i~----------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~ 118 (162)
T cd03227 72 -----------------------IF----------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQ 118 (162)
T ss_pred -----------------------eh----------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHH
Confidence 00 012499999999999999987 78999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 218 QIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 218 ~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
.+.+.+.++.++ |.++|++||+++ +.+.+|+++.|+.
T Consensus 119 ~l~~~l~~~~~~-~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 119 ALAEAILEHLVK-GAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHhc-CCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 999999998776 899999999985 5678999999964
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.75 E-value=1.1e-18 Score=173.34 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=105.3
Q ss_pred ceEEEEecCeEEEEECCCCCCHHHHHHHHhcCC-CCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHH
Q 006505 63 GVSCKAKPWEILAIVGPSGAGKSSLLEILAGKL-TPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSA 141 (643)
Q Consensus 63 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~-~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~ 141 (643)
..++++.+|++++|+|||||||||||++|++.. .+..|... . ..+..++|..|. +..++..+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~------~--~~~~~i~~~dqi---~~~~~~~d~i---- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV------P--AESASIPLVDRI---FTRIGAEDSI---- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc------c--ccccccCCcCEE---EEEecCcccc----
Confidence 345556689999999999999999999999543 22222211 0 011223332221 1111111110
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 006505 142 KLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221 (643)
Q Consensus 142 ~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~ 221 (643)
....+.+|++++ |++.+.+++.+|+++++||||+|+|+.....+..
T Consensus 86 ---------------------------------~~~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 86 ---------------------------------SDGRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ---------------------------------cCCceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 112345565555 4777788899999999999999999999988865
Q ss_pred -HHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 222 -MLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 222 -~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+++.+.+ .+.++|++||++ ++.+.+|++..++.|++...++..+.
T Consensus 132 ~ll~~l~~-~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 132 AVLEHLLE-KGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHh-cCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 4666665 489999999996 46788999999999999988875443
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.74 E-value=1.5e-17 Score=196.15 Aligned_cols=134 Identities=26% Similarity=0.455 Sum_probs=109.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHHcCChhh-hhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 128 FPLLTVEETLMFSAKLRLRLP--------QAQLRARVKSLVKELGLEHV-AMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 128 ~~~lTv~E~l~~~~~~~~~~~--------~~~~~~~v~~~l~~lgl~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+-.+||.|.+.|.-.+..+.. -++..++++ .|+.+||.+. . ++.+.+|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l-----~r~~~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTL-----SRSAGTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCC-----CCchhhCCHHHHHHHHHHHHHhhC
Confidence 456899999998554432211 013344453 6788888754 4 457789999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEecChhHHH
Q 006505 199 P--KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p--~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 270 (643)
| ++++|||||+|||+..+.++.+.|+++++ .|.|||+++|+++ ++ ..+|+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 99999999999999999999999999976 4999999999987 35 579999999 999999999998874
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=3.2e-17 Score=193.05 Aligned_cols=134 Identities=24% Similarity=0.436 Sum_probs=106.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCC-H-------HHHHHHHHHHHHHcCChhh-hhhhcCCCcCCCCCHHHHHHHHHHHHHhcC
Q 006505 128 FPLLTVEETLMFSAKLRLRLP-Q-------AQLRARVKSLVKELGLEHV-AMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 128 ~~~lTv~E~l~~~~~~~~~~~-~-------~~~~~~v~~~l~~lgl~~~-~~~~vg~~~~~~LSGGerqRv~ia~aL~~~ 198 (643)
+-.|||.|.+.|...+..... . ++..+++ +.+..+||... . ++.+.+|||||+|||.||++|+.+
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l-----~r~~~tLSGGE~QRv~LA~aL~~~ 505 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTL-----SRAAGTLSGGEAQRIRLATQIGSG 505 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhcccccccc-----CCCcCcCCHHHHHHHHHHHHHhhC
Confidence 346899999888766532211 1 1112222 23566777543 3 557789999999999999999998
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEecChhHHH
Q 006505 199 P--KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHGTVDLLS 270 (643)
Q Consensus 199 p--~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 270 (643)
| ++++|||||+|||+.+...+.+.|++++++ |.|||+++|+++ .+ ..+|+|++| ++|++++.|+++++.
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~-G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL-GNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 6 899999999999999999999999999875 999999999986 34 589999999 899999999998874
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=9.8e-19 Score=182.70 Aligned_cols=212 Identities=24% Similarity=0.335 Sum_probs=151.8
Q ss_pred hhcccccccccccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcC---CCCC------ccEEEECCCcCCc---hh
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGK---LTPQ------SGSTFVNGSPIDK---AQ 113 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~---~~~~------~G~I~~~g~~~~~---~~ 113 (643)
+++++...+-.++.++.|-|+.|-.|..++++||||-||||||+.|+.+ ++|. +-+|..+..+.-. ..
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~a 344 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKA 344 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHh
Confidence 4566666677778899999999999999999999999999999999986 3332 3344443332100 00
Q ss_pred hcccEEEEccCCCC-----CCCCCHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH
Q 006505 114 FRKVSGYVTQRDTL-----FPLLTVEETLMFS-AKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR 187 (643)
Q Consensus 114 ~~~~i~yv~Q~~~l-----~~~lTv~E~l~~~-~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq 187 (643)
-.++...+..++.| -...|+.|-+.-. ..+|. ......+.++..+|.-||.+.... +++....|||=|-
T Consensus 345 D~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra-iGA~sAEarARRILAGLGFskEMQ----~rPt~kFSGGWRM 419 (807)
T KOG0066|consen 345 DKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA-IGADSAEARARRILAGLGFSKEMQ----ERPTTKFSGGWRM 419 (807)
T ss_pred hHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH-hccccchhHHHHHHhhcCCChhHh----cCCccccCCceee
Confidence 01112222211111 2345777766532 23332 112234567788999999876542 4466789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEE-ecCh
Q 006505 188 RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLH-HGTV 266 (643)
Q Consensus 188 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~-~G~~ 266 (643)
||++||||..+|-+|.|||||+.||..+..-+-+.|+.+ .+|.++++||-.. +-+.|..|+.|++-++-| .|+.
T Consensus 420 RvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgF-LD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 420 RVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGF-LDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred ehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEecccch-HHHHHHHHhhhhhhhhhhhcchH
Confidence 999999999999999999999999999988888888776 4699999999885 788999999999887654 4554
Q ss_pred h
Q 006505 267 D 267 (643)
Q Consensus 267 ~ 267 (643)
.
T Consensus 495 ~ 495 (807)
T KOG0066|consen 495 T 495 (807)
T ss_pred H
Confidence 3
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=9.1e-17 Score=166.68 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=63.4
Q ss_pred cCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 177 RVRGISGGERRRVSIGFDVI---------HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 177 ~~~~LSGGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
...-+|+||||++++|++|+ .+|+++++||||++||+..+..+.+.|+++ +. +++++|+.. .+.+
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~q-~ii~~~~~~-~~~~ 253 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----VQ-TFVTTTDLA-DFDA 253 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----CC-EEEEeCCch-hccc
Confidence 34568999999999999985 799999999999999999999999999764 33 455555544 3566
Q ss_pred hc---CEEEEEeCCeE
Q 006505 248 MF---NSILMLANGSV 260 (643)
Q Consensus 248 ~~---D~v~~L~~G~i 260 (643)
++ ++++.+++|++
T Consensus 254 ~~~~~~~i~~l~~g~i 269 (270)
T cd03242 254 LWLRRAQIFRVDAGTL 269 (270)
T ss_pred hhccCccEEEEeCcEE
Confidence 66 68999999985
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.70 E-value=4.5e-17 Score=161.75 Aligned_cols=142 Identities=15% Similarity=0.228 Sum_probs=103.6
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccE-EEEccCCCCCCCCCHH
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVS-GYVTQRDTLFPLLTVE 134 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i-~yv~Q~~~l~~~lTv~ 134 (643)
.++.+.+|+++++++|++++|+||||+||||+++++++.. +..++ .|| +...+.+++.
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------------------~la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA------------------IMAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH------------------HHHHcCCCc---chhhcCccCh
Confidence 4567999999999999999999999999999999999873 11122 244 3344556777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 006505 135 ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST 214 (643)
Q Consensus 135 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 214 (643)
|++.... +..+.. .+..+.+|+|++|+ +.+.+++++|+++++|||++|+|+.
T Consensus 73 d~I~~~~----------------------~~~d~~-----~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~ 124 (204)
T cd03282 73 NRLLSRL----------------------SNDDSM-----ERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSA 124 (204)
T ss_pred hheeEec----------------------CCcccc-----chhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHH
Confidence 7664221 111111 12345789999965 5667788999999999999999998
Q ss_pred HHHHH-HHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 006505 215 SALQI-IDMLKVMAETRGRTVILSIHQPGFRIVKMF 249 (643)
Q Consensus 215 ~~~~i-~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~ 249 (643)
....+ ...++.+.+. |.++|++||+.+ +.+.+
T Consensus 125 ~~~~l~~~il~~l~~~-~~~~i~~TH~~~--l~~~~ 157 (204)
T cd03282 125 DGFAISLAILECLIKK-ESTVFFATHFRD--IAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEECChHH--HHHHh
Confidence 76665 4567777764 999999999975 34443
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.66 E-value=3.3e-16 Score=161.44 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=99.9
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc----hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK----AQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRL 147 (643)
Q Consensus 72 e~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~ 147 (643)
.-++|+||||||||||+++|+|.++|++|+|.++|+++.. .++.+.++++||++ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~--------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP--------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch---------
Confidence 5789999999999999999999999999999999998742 34555678899865 344556655421
Q ss_pred CHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 006505 148 PQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMA 227 (643)
Q Consensus 148 ~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~ 227 (643)
+.+ |+ .+.....+|+++++|||++ ...+..+++.+
T Consensus 182 -k~~--------------------------------~~-----~~~i~~~~P~villDE~~~------~e~~~~l~~~~- 216 (270)
T TIGR02858 182 -KAE--------------------------------GM-----MMLIRSMSPDVIVVDEIGR------EEDVEALLEAL- 216 (270)
T ss_pred -HHH--------------------------------HH-----HHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-
Confidence 000 10 1222336999999999974 33345555554
Q ss_pred HhCCCEEEEEecCCchHHH------------hhcCEEEEEeCCeEEEecChhHH
Q 006505 228 ETRGRTVILSIHQPGFRIV------------KMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 228 ~~~g~tvi~~~H~~~~~i~------------~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
+ .|.|+|+++|+++.+-. .+|||+++|++|+ ..|.++++
T Consensus 217 ~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 217 H-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred h-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 3 49999999998653222 5689999999887 56665543
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.66 E-value=1.1e-15 Score=160.23 Aligned_cols=178 Identities=24% Similarity=0.360 Sum_probs=138.5
Q ss_pred ccceeeceEEEEecC-----eEEEEECCCCCCHHHHHHHHhcCCCCCcc-EEEECCCcCCchhhcccEEEEccCCCCCCC
Q 006505 57 VRRVLDGVSCKAKPW-----EILAIVGPSGAGKSSLLEILAGKLTPQSG-STFVNGSPIDKAQFRKVSGYVTQRDTLFPL 130 (643)
Q Consensus 57 ~~~iL~~vs~~i~~G-----e~~aIlG~nGaGKSTLL~~l~g~~~~~~G-~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 130 (643)
.+..+.+..+.|+.| |++..+|.||.|||||+++++|+++|++| +|-. -.++|=||.-.--..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-----------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc-----------cceeccccccCcccc
Confidence 345677888888877 57899999999999999999999999854 3311 236777776433233
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 006505 131 LTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSG 210 (643)
Q Consensus 131 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsg 210 (643)
-||++.+.-- .| +.-...+-+.++++-|.+++..|+ .+.+|||||+|||++|..|-..+++++.|||.+-
T Consensus 417 ~tvR~ll~~k--Ir---~ay~~pqF~~dvmkpL~ie~i~dq-----evq~lSggelQRval~KOGGKpAdvYliDEpsAy 486 (592)
T KOG0063|consen 417 GTVRQLLHTK--IR---DAYMHPQFVNDVMKPLQIENIIDQ-----EVQGLSGGELQRVALALCLGKPADVYLIDEPSAY 486 (592)
T ss_pred chHHHHHHHH--hH---hhhcCHHHHHhhhhhhhHHHHHhH-----HhhcCCchhhHHHHHHHhcCCCCceEEecCchhh
Confidence 4888876532 12 111223568889999999888755 5679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
||+..+...-+.+++.--+.++|-.++.||.-. .--++|||++..
T Consensus 487 lDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 487 LDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred cChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 999999999999988766668999999999643 234689988764
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.64 E-value=5.1e-16 Score=155.70 Aligned_cols=160 Identities=19% Similarity=0.171 Sum_probs=109.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEET 136 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 136 (643)
.+.+.+|++++.++ ++++|.||||||||||||+|++..-.. + .|..+.. .+..++++.| +++.+++.|+
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFVPA--SKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCeecc--ccceecceee---EeccCCchhh
Confidence 45689999999988 999999999999999999998754221 1 1222211 1245667654 5677777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC---CCCCCH
Q 006505 137 LMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEP---TSGLDS 213 (643)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEP---tsgLD~ 213 (643)
+..+.. . . ..|.++++-+...+.+|++++|||| |+++|.
T Consensus 86 ls~g~s------~-----f---------------------------~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~ 127 (216)
T cd03284 86 LAGGRS------T-----F---------------------------MVEMVETANILNNATERSLVLLDEIGRGTSTYDG 127 (216)
T ss_pred hccCcc------h-----H---------------------------HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHH
Confidence 643210 0 0 1233334444444679999999999 888887
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 214 TSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 214 ~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
... ....++.+.+..+.++|++||+. ++.+++|++.-+.+|++...+..+++
T Consensus 128 ~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 128 LSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 653 23344445443488999999996 57889998888888998887766654
No 419
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.56 E-value=1e-12 Score=133.46 Aligned_cols=226 Identities=14% Similarity=0.134 Sum_probs=162.4
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccC-CCC--hhhH----HHHHHHHHHHHHHHHHHHHhHHHHH-HHhhHH
Q 006505 373 RFSKNIFRTKELFACRTIQMLISGIVLGSIFHNV-KDD--LTGT----EEKVGLFAFILTFLLSCTTEALPIF-LQEREI 444 (643)
Q Consensus 373 R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l-~~~--~~~~----~~r~g~lf~~~~~~~~~~~~~~~~f-~~er~v 444 (643)
|+++..+|||..+..-+++.+++.+++|.++-.. +.+ ..|. +--.|++.+........ ...... -.|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHhCH
Confidence 6788899999999999999999999999987543 111 1121 11123333222222211 122221 123333
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Q 006505 445 LMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFI 524 (643)
Q Consensus 445 ~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~ 524 (643)
+.| ....-.++..|++||.+.+++..++..+++..+.|++.+++. ..++.+++..++..++..++|.++++..++.+
T Consensus 79 ~~~-~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKE-ILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 333 333345688999999999999999999999999998877554 34555555666677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCccccchHHHHHhcCCCC
Q 006505 525 VGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLREAGYEE 604 (643)
Q Consensus 525 ~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c~~~G~~~L~~~g~~~ 604 (643)
.++.+.+.+..+++.+||.+.|.+.+|+|++|+.+++|++|+.|++-..-.++. ..
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~------------------------~~ 211 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS------------------------PT 211 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC------------------------cc
Confidence 999999999999999999999999999999999999999999998654333221 01
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 006505 605 ESSWRNLVIMVGFILIYRFISYV 627 (643)
Q Consensus 605 ~~~w~~~~il~~~~~~~~~l~~~ 627 (643)
.+.|.++++++.+.+++.+++..
T Consensus 212 ~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 212 FPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 23567889999988888776543
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.55 E-value=2.2e-13 Score=147.07 Aligned_cols=79 Identities=18% Similarity=0.362 Sum_probs=66.9
Q ss_pred cCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 177 RVRGISGGERRRVSIGFDVI---------HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 177 ~~~~LSGGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
....+|+||+|++++|+.|+ .+|++++||||+++||+..+..+.+.+.++ +..+++++|+++ .+..
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~ 344 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLAD 344 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhh
Confidence 44679999999999999885 799999999999999999999999988753 457899999876 3555
Q ss_pred hc--CEEEEEeCCeE
Q 006505 248 MF--NSILMLANGSV 260 (643)
Q Consensus 248 ~~--D~v~~L~~G~i 260 (643)
.+ ++++.+++|++
T Consensus 345 ~~~~~~i~~v~~G~i 359 (361)
T PRK00064 345 LLENAKIFHVEQGKI 359 (361)
T ss_pred hhccCcEEEEeCCEE
Confidence 53 57999999986
No 421
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.53 E-value=6e-15 Score=144.51 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=60.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII-DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 177 ~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~-~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
..+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++.+.++|++||++ ++.+++|+---+
T Consensus 58 ~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v 134 (185)
T smart00534 58 GLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV 134 (185)
T ss_pred cccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc
Confidence 34578888776433333 34599999999999999999888775 556777653489999999997 467888754444
Q ss_pred eCCeEEEe
Q 006505 256 ANGSVLHH 263 (643)
Q Consensus 256 ~~G~iv~~ 263 (643)
.++++...
T Consensus 135 ~~~~~~~~ 142 (185)
T smart00534 135 RNLHMSAD 142 (185)
T ss_pred eEEEEEEE
Confidence 44554443
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.51 E-value=6.1e-15 Score=148.15 Aligned_cols=88 Identities=24% Similarity=0.458 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 006505 154 ARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI----HDPKVLILDEPTSGLDSTSALQIIDMLKVMAET 229 (643)
Q Consensus 154 ~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~ 229 (643)
+.+.+.++..++.. ..+|||||.+++||.-|+ .++++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 44556666655532 389999999999997663 47899999999999999999999999999864
Q ss_pred CCCEEEEEecCCchHHHhhcCEEEEEe
Q 006505 230 RGRTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 230 ~g~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
+.-+|++||++ ..++.+|+.+.+.
T Consensus 189 -~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 -QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp -TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred -ccccccccccc--ccccccccccccc
Confidence 57899999997 4789999887764
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.50 E-value=1.1e-13 Score=138.67 Aligned_cols=135 Identities=21% Similarity=0.204 Sum_probs=90.9
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhc--CCCCCccEEEECCCcCCchhhcccEEEEccCCCCC-CCCCHH
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG--KLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLF-PLLTVE 134 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g--~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~-~~lTv~ 134 (643)
+.+=+|+++.=..+.+++|.||||+|||||||.++. .. +..|...... .-.++|..|....+ ...++.
T Consensus 16 ~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si~ 86 (213)
T cd03281 16 SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--------SATIGLVDKIFTRMSSRESVS 86 (213)
T ss_pred ceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--------CcEEeeeeeeeeeeCCccChh
Confidence 345566665432238999999999999999999984 33 4456554321 12366776653221 112222
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 006505 135 ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDST 214 (643)
Q Consensus 135 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~ 214 (643)
+++ +.. .-|-||++++++++.+|+++++|||++|+|+.
T Consensus 87 ~~~----------------------------S~f--------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 87 SGQ----------------------------SAF--------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hcc----------------------------chH--------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 211 100 24678999999999999999999999999998
Q ss_pred HHHHH-HHHHHHHHHh--CCCEEEEEecCCch
Q 006505 215 SALQI-IDMLKVMAET--RGRTVILSIHQPGF 243 (643)
Q Consensus 215 ~~~~i-~~~L~~l~~~--~g~tvi~~~H~~~~ 243 (643)
....+ ...++++++. .+.++|++||+++.
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 65555 5688888763 13589999999863
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.47 E-value=5.6e-14 Score=124.08 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=62.7
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc---hhhcccEEEEccCCCCCCCCCHH
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK---AQFRKVSGYVTQRDTLFPLLTVE 134 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~ 134 (643)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.++.. ...++..+|++|+ ++.. |++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~-ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI-RLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-hHH
Confidence 56899999999999999999999999999999986 7899999988743 3455667888887 5544 999
Q ss_pred HHHHHH
Q 006505 135 ETLMFS 140 (643)
Q Consensus 135 E~l~~~ 140 (643)
|||.++
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999873
No 425
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.45 E-value=4e-11 Score=123.31 Aligned_cols=236 Identities=13% Similarity=0.039 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHH----H-HhHH-HHHH
Q 006505 367 TIILTHRFSKNIFRT-KELFACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTFLLSC----T-TEAL-PIFL 439 (643)
Q Consensus 367 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~----~-~~~~-~~f~ 439 (643)
...+++|+++..+|+ |..+...+++.++.-+++|..+-....+..| .+.. -|+......++ + .... ..+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~--~f~~pg~l~~~~~~~~~~~~~~~~~~ 83 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYA--AFLAAGMVATSAMTASTFETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345779999999999 9999999999999999999887543221122 1211 22222221111 1 1111 1222
Q ss_pred H--hhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006505 440 Q--EREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFS 517 (643)
Q Consensus 440 ~--er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~ 517 (643)
. |+..+.|-+..-. ++..+.+||++.+.-..++..++...+.++ .|..+. ...+..+..+++..++..++|.++|
T Consensus 84 ~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3333333333332 778999999999988888877766655544 344433 3344444555667777789999999
Q ss_pred hccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCccccchHHHH
Q 006505 518 ALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVL 597 (643)
Q Consensus 518 ~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c~~~G~~~L 597 (643)
++.++.+.+..+...+..|++.+||.+.|.+.+|.|++|+.++||+.|+.|++-..-+++.
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~------------------- 221 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP------------------- 221 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC-------------------
Confidence 9999999998888999999999999999999999999999999999999999644433211
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006505 598 REAGYEEESSWRNLVIMVGFILIYRFISYVILRFRC 633 (643)
Q Consensus 598 ~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 633 (643)
..+.|.+++++.++.+++..++...+|+|.
T Consensus 222 ------~~~~~~~~~~l~~~~vv~~~la~~~fr~~~ 251 (253)
T TIGR01291 222 ------GTQVGLHLGALCLYAVVPFFISAALLRRRL 251 (253)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 112356788888888888888777766543
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.45 E-value=1.6e-13 Score=160.27 Aligned_cols=136 Identities=22% Similarity=0.330 Sum_probs=95.8
Q ss_pred cceeec-----eEEEEecC-eEEEEECCCCCCHHHHHHHHhcC-CCCCccEEEECCCcCCchhhcccEEEEccCCC-CCC
Q 006505 58 RRVLDG-----VSCKAKPW-EILAIVGPSGAGKSSLLEILAGK-LTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDT-LFP 129 (643)
Q Consensus 58 ~~iL~~-----vs~~i~~G-e~~aIlG~nGaGKSTLL~~l~g~-~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~-l~~ 129 (643)
.+++++ +|+.+.+| ++++|.||||+|||||||+|+|. +.+..| .+||.... .++
T Consensus 303 hPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------------------~~Vpa~~~~~~~ 364 (771)
T TIGR01069 303 HPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------------------IPIPANEHSEIP 364 (771)
T ss_pred CceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC------------------CCccCCcccccc
Confidence 355544 78888888 99999999999999999999987 222222 14444321 111
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 006505 130 LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS 209 (643)
Q Consensus 130 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts 209 (643)
+.+.+. . ..+ .+ + .+ .+..+++|+|+++++.|++.+ .+|+++|+|||++
T Consensus 365 ---~~d~i~--~--~i~--~~---~---si---------------~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~ 413 (771)
T TIGR01069 365 ---YFEEIF--A--DIG--DE---Q---SI---------------EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGA 413 (771)
T ss_pred ---chhhee--e--ecC--hH---h---HH---------------hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCC
Confidence 111110 0 000 00 0 00 113468999999999998876 8999999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHHhCCCEEEEEecCCch
Q 006505 210 GLDSTSALQI-IDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 210 gLD~~~~~~i-~~~L~~l~~~~g~tvi~~~H~~~~ 243 (643)
|+|+.....+ ..+++.+++ .|.++|++||+.+.
T Consensus 414 GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL 447 (771)
T TIGR01069 414 GTDPDEGSALAISILEYLLK-QNAQVLITTHYKEL 447 (771)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHH
Confidence 9999999999 577888876 59999999999764
No 427
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.45 E-value=2.7e-11 Score=122.86 Aligned_cols=222 Identities=12% Similarity=0.068 Sum_probs=146.0
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHH--hhHHHHHHhCCCCCC
Q 006505 379 FRTKELFACRTIQMLISGIVLGSIFHNVKDDLTGTEE-KVGLFAFILTFLLSCTTEALPIFLQ--EREILMKETSCGSYR 455 (643)
Q Consensus 379 ~Rd~~~~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~-r~g~lf~~~~~~~~~~~~~~~~f~~--er~v~~rE~~~~~Y~ 455 (643)
+|||..+..-+.+.+++-++.+.+|-+.. +.+..+. ..|.+-+...+. +.+..--.... |+..+.|=+..- .+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~er~~G~l~rl~~~P-~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAIST--AFTGQAIAVARDRRYGALKRLGATP-LP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHH--HHHHHHHHHHHHHHhCHHHHHhcCC-Cc
Confidence 69999999999999998888888775421 1112211 222221111111 11111112223 334555555444 47
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CHHHHHHHHHH
Q 006505 456 VSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVP---NFIVGNSVISG 532 (643)
Q Consensus 456 ~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~---~~~~a~~~~~~ 532 (643)
+..|+++|.+..++..++..+++. +++++.|++.....+ ..++...+....+.+++.+++++++ +.+.+..+...
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999989898877765554 556778988654332 3333444555566667777777764 45555777888
Q ss_pred HHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCccccchHHHHHhcCCCCCChHHHHH
Q 006505 533 VMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLREAGYEEESSWRNLV 612 (643)
Q Consensus 533 ~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~ 612 (643)
...+++++||.+.|.+.+|.|++|+.+++|++|+.+++-..-.++. +....|.+++
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~------------------------~~~~~~~~~~ 211 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV------------------------DTFGAVRDLV 211 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC------------------------ChhhHHHHHH
Confidence 8889999999999999999999999999999999998754332211 1223577888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006505 613 IMVGFILIYRFISYVILR 630 (643)
Q Consensus 613 il~~~~~~~~~l~~~~L~ 630 (643)
+++++.+++..++....|
T Consensus 212 ~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 212 VVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888887776666544
No 428
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.44 E-value=3.9e-12 Score=126.67 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=124.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 006505 454 YRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGV 533 (643)
Q Consensus 454 Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~ 533 (643)
-+...++++|.+..++..+++++++..+.|++.|++.. +++.+++..++..++..+++.++++++++...+. ..+.
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHH
Confidence 34567799999999999999999999999999999864 4667777788888999999999999999765443 3344
Q ss_pred HHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCccccchHHHHHhcCCCCCChHHHHHH
Q 006505 534 MGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLREAGYEEESSWRNLVI 613 (643)
Q Consensus 534 ~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~i 613 (643)
+.+.++++|.+.|.+.+|.|++|+.|++|++|+.+++-...+++. ..+.|.++++
T Consensus 133 ~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~-------------------------~~~~~~~~~~ 187 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN-------------------------DGTLWQAVAV 187 (208)
T ss_pred HHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-------------------------HHHHHHHHHH
Confidence 556777899999999999999999999999999999976665431 1235788999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 006505 614 MVGFILIYRFISYVILRFRC 633 (643)
Q Consensus 614 l~~~~~~~~~l~~~~L~~~~ 633 (643)
++++.+++.+++....|+|+
T Consensus 188 L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 188 LLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 99999999888888776554
No 429
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.43 E-value=8.6e-14 Score=146.16 Aligned_cols=166 Identities=27% Similarity=0.417 Sum_probs=120.4
Q ss_pred ecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEE----------------------EccCCC
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGY----------------------VTQRDT 126 (643)
Q Consensus 69 ~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~y----------------------v~Q~~~ 126 (643)
+||++.+++|.||-||||-|++++|..+|.-|.- +. +..|...++| =||.-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~--~~----pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd 171 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY--DN----PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVD 171 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC--CC----CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHH
Confidence 5899999999999999999999999999974431 11 0111111111 011100
Q ss_pred CCC---CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 006505 127 LFP---LLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLI 203 (643)
Q Consensus 127 l~~---~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~ill 203 (643)
.+| ..+|.+++. ....++..+++++.+.|++..++ .+..|||||-||.+||.+.+++.++.+
T Consensus 172 ~ipr~~k~~v~~~l~----------~~~~r~~~~~~~~~~~L~~~~~r-----e~~~lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 172 QIPRAVKGTVGSLLD----------RKDERDNKEEVCDQLDLNNLLDR-----EVEQLSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred HHHHHHHHHHHHHHH----------HHhhcccHHHHHHHHHHhhHHHh-----hhhhcccchhhhhhhhhhhhhhcceeE
Confidence 001 012322221 12223356778888888887755 456999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeC
Q 006505 204 LDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLAN 257 (643)
Q Consensus 204 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 257 (643)
+|||.+-||...+..-...++.+... ++=||++.||++. +--+.|-+.+|..
T Consensus 237 FDEpSsYLDVKQRLkaA~~IRsl~~p-~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIRSLINP-DRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred ecCCcccchHHHhhhHHHHHHHhhCC-CCeEEEEEeechH-HHhhhcceeEEec
Confidence 99999999999999999999999874 8899999999973 4446788888863
No 430
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.43 E-value=9.3e-13 Score=132.35 Aligned_cols=142 Identities=22% Similarity=0.227 Sum_probs=92.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhc-CCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAG-KLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g-~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
.+.+.+|+++.+++|++++|.||||+||||+++++++ ...+..|..... +...-.-+.+...-+..+|.+..+++
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~~~~~~~~~i~~~~~~~d~~~~~~S--- 92 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SSATLSIFDSVLTRMGASDSIQHGMS--- 92 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-CceEEeccceEEEEecCccccccccc---
Confidence 3578999999999999999999999999999999999 556667775443 11110111111111221221111111
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTS 215 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~ 215 (643)
.| ..|-+|++-...-+++|+++|+|||.+|.|+..
T Consensus 93 --tF-------------------------------------------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d 127 (222)
T cd03287 93 --TF-------------------------------------------MVELSETSHILSNCTSRSLVILDELGRGTSTHD 127 (222)
T ss_pred --hH-------------------------------------------HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhh
Confidence 01 123334444444456899999999999998777
Q ss_pred HHHH-HHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 006505 216 ALQI-IDMLKVMAETRGRTVILSIHQPGFRIVKMF 249 (643)
Q Consensus 216 ~~~i-~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~ 249 (643)
...+ ...++.+.+..+.++|++||+++ +.++.
T Consensus 128 ~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~ 160 (222)
T cd03287 128 GIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL 160 (222)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence 7765 56777777644889999999985 44444
No 431
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.41 E-value=1.1e-10 Score=119.88 Aligned_cols=236 Identities=13% Similarity=0.126 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccC-CC------Ch---hhHHHHHHHHHHHHHHHHHHHHh
Q 006505 364 FKETIILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHNV-KD------DL---TGTEEKVGLFAFILTFLLSCTTE 433 (643)
Q Consensus 364 ~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l-~~------~~---~~~~~r~g~lf~~~~~~~~~~~~ 433 (643)
+++++.+++|+++...|||..+..-+++.+++-+++|.+|-.. +. +. -...--.|++-+...+..+..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-- 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-- 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 4678999999999999999999999999999999999998442 11 00 011122233222222222111
Q ss_pred HHH-HHHHhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHH
Q 006505 434 ALP-IFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSV 512 (643)
Q Consensus 434 ~~~-~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~ 512 (643)
+.. ..-.|+..+.+=+... -+...+.+++++..+-..+++.+++..+.+. .|.+......+.....+++..++..++
T Consensus 79 ~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 79 SLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred hhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 111 1222333444444444 4777899999999988888877665555543 366555444444444556666778899
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCc---cchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCcc
Q 006505 513 VVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGI---PDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKC 589 (643)
Q Consensus 513 ~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~i---p~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c 589 (643)
|.++|+++++.+.+..+.++++.+++..||.+.|.+.+ |.|++|+.++||+.|..|++=.- +.+.
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g~----------- 224 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYGQ----------- 224 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhCC-----------
Confidence 99999999999888888888888999999999998766 88999999999999999887422 1110
Q ss_pred ccchHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 006505 590 VVKGEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRF 631 (643)
Q Consensus 590 ~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 631 (643)
..|..+++++++.+++..++....|+
T Consensus 225 ----------------~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 225 ----------------LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred ----------------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 02556677777777777776665543
No 432
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.41 E-value=7e-12 Score=137.45 Aligned_cols=174 Identities=17% Similarity=0.258 Sum_probs=116.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcC---C--------chhhcccEEEEccCC
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI---D--------KAQFRKVSGYVTQRD 125 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~---~--------~~~~~~~i~yv~Q~~ 125 (643)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++.|.|.+.|+.- . ...+++.+.++.+.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 35689999 99999999999999999999999999999999999999966543 2 123567788998654
Q ss_pred CCCCCCCHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH-HHHhcCCCEE
Q 006505 126 TLFPLLTVEETLM--FSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG-FDVIHDPKVL 202 (643)
Q Consensus 126 ~l~~~lTv~E~l~--~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia-~aL~~~p~il 202 (643)
. ++.+-.. +.+ -.+.|.+..-|-+ .. + ..-.++ |.+=| |++. +
T Consensus 224 ~-----~~~~r~~~~~~a------------~~iAEyfr~~g~~-Vl---l---~~Dslt-----r~A~A~rEis-----l 269 (438)
T PRK07721 224 Q-----PALMRIKGAYTA------------TAIAEYFRDQGLN-VM---L---MMDSVT-----RVAMAQREIG-----L 269 (438)
T ss_pred C-----CHHHHHHHHHHH------------HHHHHHHHHCCCc-EE---E---EEeChH-----HHHHHHHHHH-----H
Confidence 3 1211111 111 0111222222211 00 0 000111 00000 1110 1
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHH-hCCC-----EEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhH
Q 006505 203 ILDEP--TSGLDSTSALQIIDMLKVMAE-TRGR-----TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDL 268 (643)
Q Consensus 203 llDEP--tsgLD~~~~~~i~~~L~~l~~-~~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 268 (643)
.+.|| |+|+|+.....+.++++++.+ +.|. ||++.+||++. .++|++..+.+|+++..++.++
T Consensus 270 ~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 270 AVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred hcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 12343 679999999999999999874 3475 99999999973 7899999999999999998765
No 433
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.38 E-value=5e-13 Score=133.74 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 006505 185 ERRRVSIGFDVIHDPKVLILDEPT-----SGLDSTSALQIIDMLKVMAE 228 (643)
Q Consensus 185 erqRv~ia~aL~~~p~illlDEPt-----sgLD~~~~~~i~~~L~~l~~ 228 (643)
|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.32 E-value=1.3e-12 Score=133.47 Aligned_cols=176 Identities=19% Similarity=0.214 Sum_probs=106.8
Q ss_pred EEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCcc--EEEE--CCC-cCCchhhccc---EEEEccCCCCCCCC---CHH
Q 006505 66 CKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSG--STFV--NGS-PIDKAQFRKV---SGYVTQRDTLFPLL---TVE 134 (643)
Q Consensus 66 ~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G--~I~~--~g~-~~~~~~~~~~---i~yv~Q~~~l~~~l---Tv~ 134 (643)
..+.+||.++|+||+|+|||||++.|++......+ .+.+ -|+ ..+..++.+. +-.+.+-+. .+.. ..+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 46889999999999999999999999998776532 3221 222 1222222222 222333232 1110 000
Q ss_pred HHHHHHHHhcC-CCC----HHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHH--------HHHHHHHHHHhcCCCE
Q 006505 135 ETLMFSAKLRL-RLP----QAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGE--------RRRVSIGFDVIHDPKV 201 (643)
Q Consensus 135 E~l~~~~~~~~-~~~----~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGe--------rqRv~ia~aL~~~p~i 201 (643)
.-+..+..++. +.. -++. .+..+..++ ++......+|||+ +||+++|+++..+++|
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~e----------v~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsI 158 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSI-TRLARAYNT----------VVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSL 158 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhh----------ccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCce
Confidence 11111111100 000 0000 011111111 2233456689999 9999999999999999
Q ss_pred EEEeCCCCCCCHHHHHH-HHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeE
Q 006505 202 LILDEPTSGLDSTSALQ-IIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSV 260 (643)
Q Consensus 202 lllDEPtsgLD~~~~~~-i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 260 (643)
.+| ||+.+|+.+... ++ +.++.. .+.|.|+.+|+.. ....+|.|.+|++|+.
T Consensus 159 t~l--~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 159 TII--ATALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred EEe--eeheecCCCcccchH--HHHHhc-CCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 999 999999655543 54 455543 4789999999985 4689999999999987
No 435
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.29 E-value=6e-12 Score=143.57 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 179 RGISGGERRRVSIGFDVIHD----PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~~----p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||++||+|. +...+|++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~--~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQ--VAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHH--HHHhcCeEEE
Confidence 46899999999999999985 699999999999999999999999999973 799999999985 4578999999
Q ss_pred EeCCe
Q 006505 255 LANGS 259 (643)
Q Consensus 255 L~~G~ 259 (643)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98764
No 436
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=2.7e-11 Score=130.71 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 006505 179 RGISGGERRRVSIGFDVIH---------DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~---------~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~ 242 (643)
..+|.||+|++.||..|+. +|+|+|||||+++||+..+..+++.|++. |.+|++|+|+++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChh
Confidence 3689999999999999999 99999999999999999999999999753 679999999975
No 437
>PRK10869 recombination and repair protein; Provisional
Probab=99.26 E-value=1.4e-11 Score=139.66 Aligned_cols=77 Identities=23% Similarity=0.421 Sum_probs=69.7
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEE
Q 006505 179 RGISGGERRRVSIGFDVIH----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILM 254 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 254 (643)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +..++|+.++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~--~~~~ad~~~~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQ--VAGCGHQHFF 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH--HHHhCCEEEE
Confidence 3589999999999999997 5899999999999999999999999999974 699999999985 5689999999
Q ss_pred EeCCe
Q 006505 255 LANGS 259 (643)
Q Consensus 255 L~~G~ 259 (643)
++++.
T Consensus 505 v~k~~ 509 (553)
T PRK10869 505 VSKET 509 (553)
T ss_pred Eeccc
Confidence 98753
No 438
>PRK15066 inner membrane transport permease; Provisional
Probab=99.26 E-value=5e-09 Score=107.94 Aligned_cols=241 Identities=12% Similarity=0.134 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHHHHHHHHhccCCCChhhH----HHHHHHHHHHHHHHHHHHHhHHHHH
Q 006505 364 FKETIILTHRFSKNIFRTKEL-FACRTIQMLISGIVLGSIFHNVKDDLTGT----EEKVGLFAFILTFLLSCTTEALPIF 438 (643)
Q Consensus 364 ~~Q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~~li~G~~f~~l~~~~~~~----~~r~g~lf~~~~~~~~~~~~~~~~f 438 (643)
|+-++.+.+|+.+...||+.. +..-+++.++..++.|.++-....+..+. .--.|++-+....... ......+
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~--~~~~~~i 84 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSY--SNVASSF 84 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 677889999999999999854 44555566666677776652210111111 1111322222221111 1111223
Q ss_pred HHhhHH-HHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006505 439 LQEREI-LMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFS 517 (643)
Q Consensus 439 ~~er~v-~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~ 517 (643)
..+|.. ..++...---++..+.+++++...-..++..++..++.+...|.+... ...++..+++........|.++|
T Consensus 85 ~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~--~~~~l~~~ll~~~~f~~~gl~~a 162 (257)
T PRK15066 85 FSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH--WGIVLLTVLLTAILFSLGGLINA 162 (257)
T ss_pred HHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333311 012212223577889999999887777766666555555544666432 23333333343444445588888
Q ss_pred hccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCccccchHHHH
Q 006505 518 ALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVL 597 (643)
Q Consensus 518 ~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c~~~G~~~L 597 (643)
.+.++.+....+.+.++.+++..||.+.|.+++|.|++|+.++||+.|..|++=..-++
T Consensus 163 ~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g--------------------- 221 (257)
T PRK15066 163 VFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLG--------------------- 221 (257)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcC---------------------
Confidence 88999888888889999999999999999999999999999999999999987432221
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006505 598 REAGYEEESSWRNLVIMVGFILIYRFISYVILRFRC 633 (643)
Q Consensus 598 ~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 633 (643)
......|.++++++++.+++..++....|+++
T Consensus 222 ----~~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~ 253 (257)
T PRK15066 222 ----ISDVPLWLAFAVLLVFIVVLYLLAWYLLERGR 253 (257)
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11123578889999999888888777765443
No 439
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.25 E-value=1.2e-11 Score=141.54 Aligned_cols=79 Identities=23% Similarity=0.383 Sum_probs=70.2
Q ss_pred cCCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 006505 177 RVRGISGGERRRVSIGFDVI----------HDPKVLILDEPT-SGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRI 245 (643)
Q Consensus 177 ~~~~LSGGerqRv~ia~aL~----------~~p~illlDEPt-sgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i 245 (643)
.+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ + |.|||++||++. .
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~-~~~iiiish~~~--~ 539 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--K-DTNVFVISHKDH--D 539 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--C-CCeEEEEECchh--c
Confidence 56789999999999999887 599999999998 789999999999999998 3 899999999975 4
Q ss_pred HhhcCEEEEEeC-CeE
Q 006505 246 VKMFNSILMLAN-GSV 260 (643)
Q Consensus 246 ~~~~D~v~~L~~-G~i 260 (643)
.+.+|++++|.+ |+.
T Consensus 540 ~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 540 PQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhhcEEEEEEECCe
Confidence 678999999986 554
No 440
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=1.6e-11 Score=149.76 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=75.2
Q ss_pred CCcCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 006505 175 DDRVRGISGGERRRVSIGFDVIH----------DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFR 244 (643)
Q Consensus 175 ~~~~~~LSGGerqRv~ia~aL~~----------~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~ 244 (643)
++.+++|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.+ .|++|++|||+++.
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~- 1022 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEF- 1022 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHH-
Confidence 45788999999999999999985 7999999999999999999999999999987 59999999999974
Q ss_pred HHhhcCEEEEEeCC
Q 006505 245 IVKMFNSILMLANG 258 (643)
Q Consensus 245 i~~~~D~v~~L~~G 258 (643)
...++|+|.|++.|
T Consensus 1023 ~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1023 RERIPHRILVKKTN 1036 (1042)
T ss_pred HHhhCCEEEEEECC
Confidence 78899999999754
No 441
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.25 E-value=9.3e-12 Score=146.01 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=65.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 177 RVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID-MLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 177 ~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
..+++|+|++|++.|++++ ++|+++|+|||++|+|+.....+.. +++.+.+ .|.++|++||+++. ....+|+..++
T Consensus 387 ~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el-~~~~~~~~~v~ 463 (782)
T PRK00409 387 SLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKEL-KALMYNREGVE 463 (782)
T ss_pred chhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHH-HHHHhcCCCeE
Confidence 4568999999999999988 8999999999999999999988865 6777766 48999999999753 33344544433
Q ss_pred eCCeEEEe
Q 006505 256 ANGSVLHH 263 (643)
Q Consensus 256 ~~G~iv~~ 263 (643)
++.+.+.
T Consensus 464 -~~~~~~d 470 (782)
T PRK00409 464 -NASVEFD 470 (782)
T ss_pred -EEEEEEe
Confidence 5566553
No 442
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.24 E-value=5.1e-11 Score=120.74 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=91.2
Q ss_pred EEecCeEEEEECCCCCCHHHH-HHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 006505 67 KAKPWEILAIVGPSGAGKSSL-LEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRL 145 (643)
Q Consensus 67 ~i~~Ge~~aIlG~nGaGKSTL-L~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~ 145 (643)
-+++|++++|.|+|||||||| ++.+++..++... +.|+..+ .|..+.+.....+..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~-----------------~~yi~~e------~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS-----------------VSYVSTQ------LTTTEFIKQMMSLGY 76 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc-----------------EEEEeCC------CCHHHHHHHHHHhCC
Confidence 489999999999999999999 7999987654322 2344321 244444444332221
Q ss_pred CCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CHHHHH
Q 006505 146 RLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI----HDPKVLILDEPTSGL----DSTSAL 217 (643)
Q Consensus 146 ~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~----~~p~illlDEPtsgL----D~~~~~ 217 (643)
. - ++.... +.-... +.. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+....
T Consensus 77 ~--~-------~~~~~~-~~l~~~-----~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~ 140 (230)
T PRK08533 77 D--I-------NKKLIS-GKLLYI-----PVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVN 140 (230)
T ss_pred c--h-------HHHhhc-CcEEEE-----Eec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHH
Confidence 1 0 011000 100000 111 235666655544444332 369999999999999 888888
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchH------HHhhcCEEEEEe
Q 006505 218 QIIDMLKVMAETRGRTVILSIHQPGFR------IVKMFNSILMLA 256 (643)
Q Consensus 218 ~i~~~L~~l~~~~g~tvi~~~H~~~~~------i~~~~D~v~~L~ 256 (643)
++.+.++++++. |.|+++++|+.... +..++|-|+.|+
T Consensus 141 ~l~~~l~~l~~~-g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 141 DLMAFFKRISSL-NKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHhC-CCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 999999999875 88877766543210 123457777775
No 443
>PRK14079 recF recombination protein F; Provisional
Probab=99.23 E-value=2.7e-10 Score=122.44 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 006505 179 RGISGGERRRVSIGFDVI---------HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMF 249 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~ 249 (643)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|-+++.+ +.+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~~~-----~~~ 332 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTEAP-----PGA 332 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCCCC-----CCC
Confidence 358999999999999998 899999999999999999999999888643 23455555433 578
Q ss_pred CEEEEEeCCeEEEe
Q 006505 250 NSILMLANGSVLHH 263 (643)
Q Consensus 250 D~v~~L~~G~iv~~ 263 (643)
|+++.+.+|++.-.
T Consensus 333 ~~~~~~~~~~~~~~ 346 (349)
T PRK14079 333 ALTLRIEAGVFTPE 346 (349)
T ss_pred ceEEEEeccEecCC
Confidence 99999999887543
No 444
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.23 E-value=4.8e-11 Score=119.66 Aligned_cols=136 Identities=21% Similarity=0.237 Sum_probs=89.8
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHH
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 135 (643)
.+.+-+|+++..++|++++|.||||+||||+++++++..--. . |..+..+. ..++++ +.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~------G~~vpa~~--~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQM------GMDVPAKS--MRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHc------CCccCccc--cEeccc---cEEEEecCccc
Confidence 467899999999999999999999999999999998863211 1 11111110 011111 12222222222
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGIS--GGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LS--GGerqRv~ia~aL~~~p~illlDEPtsgLD~ 213 (643)
++.. ++| ..|-+|++-....+++|+++++|||.+|+|+
T Consensus 85 ~~~~----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 85 DIMK----------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred cccc----------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 2210 111 1234444444445678999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhCCCEEEEEecCCch
Q 006505 214 TSALQIIDM-LKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 214 ~~~~~i~~~-L~~l~~~~g~tvi~~~H~~~~ 243 (643)
.....+... ++.+.+..+.++|++||+++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~el 155 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHSL 155 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 999988888 777776448999999999863
No 445
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.22 E-value=1.4e-11 Score=123.72 Aligned_cols=64 Identities=27% Similarity=0.497 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 006505 178 VRGISGGERRRVSIGFDVIHDP---KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242 (643)
Q Consensus 178 ~~~LSGGerqRv~ia~aL~~~p---~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~ 242 (643)
...+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|++.++ .+.-||+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccch
Confidence 4567999999999998888766 89999999999999999999999988876 4889999999985
No 446
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.21 E-value=1.9e-10 Score=129.81 Aligned_cols=137 Identities=23% Similarity=0.405 Sum_probs=103.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCH-HHHHHHHHHH------HHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCC-
Q 006505 128 FPLLTVEETLMFSAKLRLRLPQ-AQLRARVKSL------VKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP- 199 (643)
Q Consensus 128 ~~~lTv~E~l~~~~~~~~~~~~-~~~~~~v~~~------l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p- 199 (643)
+..+++.|.+.|...+.+...+ .-.++.+.++ |..+||.-.. .++...+|||||.||+-+|..+-++=
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~Lt 501 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGLT 501 (935)
T ss_pred HhhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccce
Confidence 3456788888887666532211 1111222232 3334654321 15567899999999999999997763
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE------eCCeEEEecChhHHHH
Q 006505 200 -KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML------ANGSVLHHGTVDLLSV 271 (643)
Q Consensus 200 -~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 271 (643)
=+++||||+-||-+..-.++++.|+++.+ .|-|+|++.||+ +....+|+|+=| +.|+|++.|+++++.+
T Consensus 502 GVlYVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 502 GVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeEEEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 36899999999999999999999999987 499999999997 478999999987 4689999999999864
No 447
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.17 E-value=1.5e-10 Score=112.83 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=66.3
Q ss_pred CCcCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCCEEEEEecCCch--
Q 006505 175 DDRVRGISGGERR------RVSIGFDVIHDPKVLILDEPTSGLD---STSALQIIDMLKVMAETRGRTVILSIHQPGF-- 243 (643)
Q Consensus 175 ~~~~~~LSGGerq------Rv~ia~aL~~~p~illlDEPtsgLD---~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~-- 243 (643)
+..+..+|+|++| +.........+|+++++|||++.+| ......+.+.++.+++. |.|+|+++|+...
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~-g~tvi~v~~~~~~~~ 144 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF-GVTTLLTSEQSGLEG 144 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC-CCEEEEEeccccCCC
Confidence 4466789999998 4444455667999999999999999 88888889999998874 9999999998753
Q ss_pred ------HHHhhcCEEEEEe
Q 006505 244 ------RIVKMFNSILMLA 256 (643)
Q Consensus 244 ------~i~~~~D~v~~L~ 256 (643)
.+..++|.++.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 1567899999987
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.17 E-value=7.2e-11 Score=124.87 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=97.8
Q ss_pred eEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhh--cccEEEEccCCC-CCCCCCHHHHHHHH
Q 006505 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQF--RKVSGYVTQRDT-LFPLLTVEETLMFS 140 (643)
Q Consensus 64 vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~--~~~i~yv~Q~~~-l~~~lTv~E~l~~~ 140 (643)
+++.+++|+.++|.||+|||||||+++|++..++..|.+.+++.. +... +..+.++.+... -....|..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~--El~~~~~~~~~l~~~~~~~~~~~~~~~------ 208 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTR--EIFLPHPNYVHLFYSKGGQGLAKVTPK------ 208 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCcc--ccCCCCCCEEEEEecCCCCCcCccCHH------
Confidence 567888999999999999999999999999999988888885321 1111 122332222100 00011111
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 006505 141 AKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQII 220 (643)
Q Consensus 141 ~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~ 220 (643)
-.+..+|-.+|+++++|||.+ .+..
T Consensus 209 ------------------------------------------------~~l~~~Lr~~pd~ii~gE~r~-------~e~~ 233 (308)
T TIGR02788 209 ------------------------------------------------DLLQSCLRMRPDRIILGELRG-------DEAF 233 (308)
T ss_pred ------------------------------------------------HHHHHHhcCCCCeEEEeccCC-------HHHH
Confidence 123445677999999999996 3456
Q ss_pred HHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHHH
Q 006505 221 DMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 221 ~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 270 (643)
+.++.+.. .+.+++.|+|..+ ..+..||+..|..|++...|.+.+..
T Consensus 234 ~~l~a~~~-g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 234 DFIRAVNT-GHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHhc-CCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 67777653 2346799999987 46779999999999988888777665
No 449
>PRK13695 putative NTPase; Provisional
Probab=99.14 E-value=1.7e-11 Score=118.76 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 178 VRGISGGERRRVSIGFDVIHDPKVLILDEP--TSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 178 ~~~LSGGerqRv~ia~aL~~~p~illlDEP--tsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
...+||+++.+..+++..+.+|+++++||| +.++| ..+.+.+.++.+ .|+++|+++|+. .+...+|++..+
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~-~~~~~i~v~h~~--~~~~~~~~i~~~ 148 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLD-SEKPVIATLHRR--SVHPFVQEIKSR 148 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHh-CCCeEEEEECch--hhHHHHHHHhcc
Confidence 456999999999999999999999999995 44444 345666666664 589999999994 366789999999
Q ss_pred eCCeEEEe
Q 006505 256 ANGSVLHH 263 (643)
Q Consensus 256 ~~G~iv~~ 263 (643)
.+|++.+.
T Consensus 149 ~~~~i~~~ 156 (174)
T PRK13695 149 PGGRVYEL 156 (174)
T ss_pred CCcEEEEE
Confidence 99998765
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.12 E-value=2.1e-10 Score=108.13 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=78.6
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHH
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQL 152 (643)
Q Consensus 73 ~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~ 152 (643)
+++|.||||+||||+++.+++...+..|.|.+-+.+..... ..+... ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~-------------------~~~~~~---~~~-------- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE-------------------LTERLI---GES-------- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH-------------------HHHHHh---hhh--------
Confidence 47899999999999999999987665555544333221111 111100 000
Q ss_pred HHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHH
Q 006505 153 RARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS----------GLDSTSALQIIDM 222 (643)
Q Consensus 153 ~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts----------gLD~~~~~~i~~~ 222 (643)
.....+...+ -.......+.++.++...+.+...+|+++++|||++ +.|......+.++
T Consensus 51 ---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 51 ---LKGALDNLII--------VFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred ---hccccccEEE--------EEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 0000000000 011222345666677888888999999999999994 4555555666666
Q ss_pred HHHHHHhCCCEEEEEecCCch
Q 006505 223 LKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 223 L~~l~~~~g~tvi~~~H~~~~ 243 (643)
+... ++.+.|+|+++|.++.
T Consensus 120 ~~~~-~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 120 LERA-RKGGVTVIFTLQVPSG 139 (165)
T ss_pred HHHH-hcCCceEEEEEecCCc
Confidence 5554 4469999999998864
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.10 E-value=1.1e-09 Score=129.95 Aligned_cols=69 Identities=25% Similarity=0.270 Sum_probs=60.4
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH---------hhcCEEEEEeCCeEEEecC
Q 006505 196 IHDPKVLILDEPTSGL-DSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIV---------KMFNSILMLANGSVLHHGT 265 (643)
Q Consensus 196 ~~~p~illlDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~---------~~~D~v~~L~~G~iv~~G~ 265 (643)
..+|+++++|||+.+| |+..+..+.+.++++.+. |.+++++||+++. +. +.||.+++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~-~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA-NCAVVLATQSISD-AERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 799999999999999875 8999999999974 43 6899999999999876664
Q ss_pred h
Q 006505 266 V 266 (643)
Q Consensus 266 ~ 266 (643)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
No 452
>PRK03918 chromosome segregation protein; Provisional
Probab=99.08 E-value=2.5e-10 Score=137.45 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=69.4
Q ss_pred CcCCCCCHHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 006505 176 DRVRGISGGERRR------VSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMF 249 (643)
Q Consensus 176 ~~~~~LSGGerqR------v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~ 249 (643)
.++..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|+.+++. +.+||++||++. +...|
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~-~~~iiiith~~~--~~~~~ 860 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK-IPQVIIVSHDEE--LKDAA 860 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc-CCEEEEEECCHH--HHHhC
Confidence 4678899999995 55556788999999999999999999999999999998764 789999999974 67899
Q ss_pred CEEEEEeC
Q 006505 250 NSILMLAN 257 (643)
Q Consensus 250 D~v~~L~~ 257 (643)
|++++|..
T Consensus 861 d~~~~l~~ 868 (880)
T PRK03918 861 DYVIRVSL 868 (880)
T ss_pred CeEEEEEe
Confidence 99999973
No 453
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.06 E-value=3.9e-10 Score=137.13 Aligned_cols=80 Identities=25% Similarity=0.286 Sum_probs=70.8
Q ss_pred CcCCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 176 DRVRGISGGERRRVSIGFDVIH--------DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 176 ~~~~~LSGGerqRv~ia~aL~~--------~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
+++++|||||+++++||++|+. +|++||+||||+|||+.+...+++.|..+++. |+||+++||.... ..+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~-g~~v~iisH~~~l-~~~ 1022 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNAS-GKTIGVISHVEAM-KER 1022 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEecHHHH-HHh
Confidence 5789999999999999999995 89999999999999999999999999999874 9999999998753 455
Q ss_pred hcCEEEEEeC
Q 006505 248 MFNSILMLAN 257 (643)
Q Consensus 248 ~~D~v~~L~~ 257 (643)
+-.+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 6667777754
No 454
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.06 E-value=2.6e-09 Score=101.99 Aligned_cols=82 Identities=22% Similarity=0.428 Sum_probs=61.8
Q ss_pred cCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh-cCE
Q 006505 173 VGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKM-FNS 251 (643)
Q Consensus 173 vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~-~D~ 251 (643)
+|.+.....|.||-=---+.+. ..+.-+++||||-++|.+.-+.++...|++++++ |.-+|+.||.|= +..+ --.
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPi--LlAiP~A~ 197 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPI--LLAIPGAE 197 (233)
T ss_pred cCCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChh--heeCCCcE
Confidence 3445556789998654444433 4577899999999999999999999999999986 999999999984 2332 245
Q ss_pred EEEEeCC
Q 006505 252 ILMLANG 258 (643)
Q Consensus 252 v~~L~~G 258 (643)
|+-++.+
T Consensus 198 I~~~~~~ 204 (233)
T COG3910 198 IYEISES 204 (233)
T ss_pred EEEEecC
Confidence 5555544
No 455
>PRK01156 chromosome segregation protein; Provisional
Probab=99.03 E-value=8.2e-10 Score=133.11 Aligned_cols=79 Identities=23% Similarity=0.384 Sum_probs=68.3
Q ss_pred CcCCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-C-CEEEEEecCCchHHHh
Q 006505 176 DRVRGISGGERRRVSI------GFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETR-G-RTVILSIHQPGFRIVK 247 (643)
Q Consensus 176 ~~~~~LSGGerqRv~i------a~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~-g-~tvi~~~H~~~~~i~~ 247 (643)
..+..||||||+|++| |++++.+|++++|||||+|||+.....+.++++...+.. | .|||++||++. ..+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~ 874 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLS 874 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHH
Confidence 3578999999999975 489999999999999999999999999999998654433 3 48999999985 458
Q ss_pred hcCEEEEEe
Q 006505 248 MFNSILMLA 256 (643)
Q Consensus 248 ~~D~v~~L~ 256 (643)
.||+++.+.
T Consensus 875 ~~d~ii~~~ 883 (895)
T PRK01156 875 VADVAYEVK 883 (895)
T ss_pred hcCeEEEEE
Confidence 999999997
No 456
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.01 E-value=8.2e-10 Score=120.43 Aligned_cols=156 Identities=19% Similarity=0.137 Sum_probs=112.1
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHH
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETL 137 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 137 (643)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++.|.|.+.|+.. .+|+|.+
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg---------------------~ev~e~~ 201 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG---------------------REVKDFI 201 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc---------------------ccHHHHH
Confidence 4578875 99999999999999999999999999999999888777666432 3566654
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCCCC
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI-------HDPKVLILDEPTSG 210 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~-------~~p~illlDEPtsg 210 (643)
..... .-|+.+ +.+ =....+-|.|+|+|++.+.+.+ .++-++++|+||+.
T Consensus 202 ~~~l~-------------------~~gl~~---tvv-v~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 202 RKELG-------------------EEGMRK---SVV-VVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHhh-------------------hcccce---eEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 32111 111111 000 0234678999999999998887 78999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEEEEEeCCeEEEecCh
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTV 266 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 266 (643)
.|+. .++-..+.+.... |.+..+.+|-+ .+.+-+ -...+|.+...+..
T Consensus 259 a~A~--reisl~~~e~p~~-G~~~~~~s~l~--~L~ERa---g~~~~GSiT~~~tv 306 (432)
T PRK06793 259 ADAR--RSVDIAVKELPIG-GKTLLMESYMK--KLLERS---GKTQKGSITGIYTV 306 (432)
T ss_pred HHHH--HHHHHHhcCCCCC-Ceeeeeeccch--hHHHHh---ccCCCcceEEEEEE
Confidence 9996 6666666666543 88888888843 244433 33567887666543
No 457
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.97 E-value=2.5e-10 Score=124.17 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=47.0
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCcc-EEEECCCcCC
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSG-STFVNGSPID 110 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G-~I~~~g~~~~ 110 (643)
+.+|++||+++++||+++|+|||||||||||+ +|+..|++| +|.++|+++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 788888877 8999999874
No 458
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.94 E-value=1e-07 Score=97.86 Aligned_cols=234 Identities=16% Similarity=0.213 Sum_probs=151.2
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHhccCC------CChhh--HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHH
Q 006505 375 SKNIFRTKELFACRTIQMLISGIVLGSIFHNVK------DDLTG--TEEKVGLFAFILTFLLSCTTEALPIFLQEREILM 446 (643)
Q Consensus 375 ~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~l~------~~~~~--~~~r~g~lf~~~~~~~~~~~~~~~~f~~er~v~~ 446 (643)
+......+.....+....++.+...+..+.+.+ ....+ ...-.|.+.+...+.........-.-..++..+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 121 (286)
T COG0842 42 FQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLE 121 (286)
T ss_pred heeeeecccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHhHHhhCcHH
Confidence 444445555555555556666666666655543 11111 1122333333333332222221111113444445
Q ss_pred HHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHH
Q 006505 447 KETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFS-ALVPNFIV 525 (643)
Q Consensus 447 rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~-~~~~~~~~ 525 (643)
|=..+...+ ..+++++.+...-...+...+...++.+..| ......+..+..++.+......++|.+++ ...++.+.
T Consensus 122 ~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~ 199 (286)
T COG0842 122 RLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQC 199 (286)
T ss_pred HHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 545555433 5677777777777776666666666666667 33334455666666777777788888666 36677788
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCccccchHHHHHhcCCCCC
Q 006505 526 GNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGKCVVKGEDVLREAGYEEE 605 (643)
Q Consensus 526 a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~c~~~G~~~L~~~g~~~~ 605 (643)
+..+...+..++..++|.+.|.+.+|.|++|+.+++|.+|+.+++-.....+. ..+
T Consensus 200 ~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~------------------------~~~ 255 (286)
T COG0842 200 ASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGW------------------------RND 255 (286)
T ss_pred HHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCC------------------------chh
Confidence 88888888999999999999999999999999999999999999866555432 111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006505 606 SSWRNLVIMVGFILIYRFISYVILRFRCS 634 (643)
Q Consensus 606 ~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 634 (643)
..|.++++++++.+++.+++...++++.+
T Consensus 256 ~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 256 GIWISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 26889999999999999998888877654
No 459
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.92 E-value=9.8e-09 Score=104.26 Aligned_cols=162 Identities=20% Similarity=0.246 Sum_probs=96.3
Q ss_pred eeece-EEEEecCeEEEEECCCCCCHHHHHHHHh-cCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHH
Q 006505 60 VLDGV-SCKAKPWEILAIVGPSGAGKSSLLEILA-GKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETL 137 (643)
Q Consensus 60 iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~l~-g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 137 (643)
-|+.+ .+=+++|+++.|.|++|||||||...++ +..+ ..+ .+.|+..+. +..+-+
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~----------------~~~y~~~e~------~~~~~~ 69 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGK----------------KVYVITTEN------TSKSYL 69 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCC----------------EEEEEEcCC------CHHHHH
Confidence 34443 5679999999999999999999998875 2211 111 234444321 233322
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CC
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH--DPKVLILDEPTSG---LD 212 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~--~p~illlDEPtsg---LD 212 (643)
.-...+ +..-. +.+. -|.....+... ......|.++++.+.....++. +|+++++||||+. .|
T Consensus 70 ~~~~~~--g~~~~-------~~~~-~g~l~i~~~~~--~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~ 137 (234)
T PRK06067 70 KQMESV--KIDIS-------DFFL-WGYLRIFPLNT--EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAE 137 (234)
T ss_pred HHHHHC--CCChh-------HHHh-CCCceEEeccc--cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCC
Confidence 221111 11100 0000 00000000000 1122456788999999999987 9999999999964 55
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecCCch------HHHhhcCEEEEEeC
Q 006505 213 STSALQIIDMLKVMAETRGRTVILSIHQPGF------RIVKMFNSILMLAN 257 (643)
Q Consensus 213 ~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~------~i~~~~D~v~~L~~ 257 (643)
.....++++.++.+++ .|.|+++++|+... .+..++|-++.|+.
T Consensus 138 ~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 138 EDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 5555666666777776 48999999998753 13456677777763
No 460
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.91 E-value=1.9e-09 Score=134.28 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=63.3
Q ss_pred cCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hCCCEEEEEecCCchHHH
Q 006505 177 RVRGISGGERR------RVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAE----TRGRTVILSIHQPGFRIV 246 (643)
Q Consensus 177 ~~~~LSGGerq------Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~----~~g~tvi~~~H~~~~~i~ 246 (643)
..+.||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. ..|.|||++||++.. +.
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-~~ 1274 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-VE 1274 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH-HH
Confidence 34689999999 99999999999999999999999999999999999988742 247899999999974 66
Q ss_pred hhc
Q 006505 247 KMF 249 (643)
Q Consensus 247 ~~~ 249 (643)
.++
T Consensus 1275 ~~~ 1277 (1311)
T TIGR00606 1275 LLG 1277 (1311)
T ss_pred HHh
Confidence 654
No 461
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.90 E-value=1.8e-09 Score=133.44 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=68.3
Q ss_pred CcCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCE
Q 006505 176 DRVRGISGGERRRVSIGFDVI----HDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNS 251 (643)
Q Consensus 176 ~~~~~LSGGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~ 251 (643)
..+..||||||+|++||++++ .+|++++|||||+|||+.+...+.++|+.+++ +.++|++||++. ....||+
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~d~ 1160 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVADQ 1160 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHhhh
Confidence 467899999999999999984 67799999999999999999999999999874 578999999986 4578999
Q ss_pred EEEEe
Q 006505 252 ILMLA 256 (643)
Q Consensus 252 v~~L~ 256 (643)
++.+.
T Consensus 1161 ~~~~~ 1165 (1179)
T TIGR02168 1161 LYGVT 1165 (1179)
T ss_pred Heeee
Confidence 98764
No 462
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.88 E-value=9.1e-09 Score=101.95 Aligned_cols=119 Identities=21% Similarity=0.383 Sum_probs=75.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHH
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQ-SGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQ 151 (643)
Q Consensus 73 ~~aIlG~nGaGKSTLL~~l~g~~~~~-~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~ 151 (643)
+++|.||+||||||+++.|.+...+. .|.|...+.++.. ......+++.|...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~-~~~~~~~~i~q~~v------------------------- 56 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF-VHESKRSLINQREV------------------------- 56 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc-cccCccceeeeccc-------------------------
Confidence 78999999999999999998887643 5676655444311 00111112222110
Q ss_pred HHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 006505 152 LRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRG 231 (643)
Q Consensus 152 ~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g 231 (643)
|. ....++ -+++++|..+|+++++|||. |..+...++ +.+. .|
T Consensus 57 ------------g~-----------~~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~-~G 99 (198)
T cd01131 57 ------------GL-----------DTLSFE------NALKAALRQDPDVILVGEMR---DLETIRLAL----TAAE-TG 99 (198)
T ss_pred ------------CC-----------CccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHH-cC
Confidence 00 000111 14677888999999999996 665443333 3444 49
Q ss_pred CEEEEEecCCchHHHhhcCEEEEEe
Q 006505 232 RTVILSIHQPGFRIVKMFNSILMLA 256 (643)
Q Consensus 232 ~tvi~~~H~~~~~i~~~~D~v~~L~ 256 (643)
..++.|+|.++ ..+..||++.+.
T Consensus 100 ~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 100 HLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred CEEEEEecCCc--HHHHHhHHHhhc
Confidence 99999999986 357789987764
No 463
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.88 E-value=1.2e-08 Score=104.07 Aligned_cols=137 Identities=24% Similarity=0.384 Sum_probs=83.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECC-CcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCH
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG-SPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQ 149 (643)
Q Consensus 71 Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g-~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~ 149 (643)
|++..|.||+|+|||||.-.++=-.. +|.=.+.+ .... -...+-|+.=++ +.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va--~G~~~~g~~~~~~---~~~~Vlyi~~Ed----------------------~~ 53 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA--LGKNLFGGGLKVT---EPGRVVYLSAED----------------------PR 53 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh--cCccccCCccccC---CCceEEEEECCC----------------------CH
Confidence 77899999999999999887763211 12111110 1100 012344444221 12
Q ss_pred HHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHH----------------HHhcCCCEEEEeCCCC----
Q 006505 150 AQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF----------------DVIHDPKVLILDEPTS---- 209 (643)
Q Consensus 150 ~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~----------------aL~~~p~illlDEPts---- 209 (643)
++..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 54 ~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~ 125 (239)
T cd01125 54 EEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHG 125 (239)
T ss_pred HHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCC
Confidence 333445556666555443322111 1244455444332 235799999999 765
Q ss_pred --CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 006505 210 --GLDSTSALQIIDMLKVMAETRGRTVILSIHQPG 242 (643)
Q Consensus 210 --gLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~ 242 (643)
.+|+.....+++.|++++++.|.|||+++|..-
T Consensus 126 ~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 126 VSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 479999999999999999888999999999874
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.83 E-value=1.3e-07 Score=85.75 Aligned_cols=118 Identities=31% Similarity=0.459 Sum_probs=79.2
Q ss_pred cCeEEEEECCCCCCHHHHHHHHhcCCCCCc-cEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQS-GSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLP 148 (643)
Q Consensus 70 ~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~-G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~ 148 (643)
+|..+.|.||+|+||||+++.|+....... +-+.++......... ....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVL------------------DQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCH------------------HHHH------------
Confidence 467899999999999999999999876543 445554432211000 0000
Q ss_pred HHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-----HH
Q 006505 149 QAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID-----ML 223 (643)
Q Consensus 149 ~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~-----~L 223 (643)
.. ..........+++..+..+.++--.+|+++++||+..-.+......... ..
T Consensus 51 -----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 -----------------LI-----IVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred -----------------hh-----hhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 00 0011223567777888777777777789999999999999998887765 22
Q ss_pred HHHHHhCCCEEEEEec
Q 006505 224 KVMAETRGRTVILSIH 239 (643)
Q Consensus 224 ~~l~~~~g~tvi~~~H 239 (643)
.......+..+|+++|
T Consensus 109 ~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 109 LLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHhcCCCEEEEEeC
Confidence 3333345788999998
No 465
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.80 E-value=6.9e-09 Score=128.36 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=68.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCEE
Q 006505 177 RVRGISGGERRRVSIGFDVIH----DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSI 252 (643)
Q Consensus 177 ~~~~LSGGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~v 252 (643)
.+..||||||++++||.+++. +|++++||||++|||+.....+.++|+++++ +..+|++||++. ....||++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~--~~~~~d~~ 1146 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSP--MIEYADRA 1146 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHH--HHHhccee
Confidence 567899999999999999984 7899999999999999999999999999864 578999999974 56899999
Q ss_pred EEEeC
Q 006505 253 LMLAN 257 (643)
Q Consensus 253 ~~L~~ 257 (643)
+.+..
T Consensus 1147 ~~~~~ 1151 (1164)
T TIGR02169 1147 IGVTM 1151 (1164)
T ss_pred EeEEE
Confidence 88753
No 466
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.77 E-value=1.6e-08 Score=111.85 Aligned_cols=151 Identities=18% Similarity=0.255 Sum_probs=93.0
Q ss_pred ceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHH
Q 006505 59 RVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLM 138 (643)
Q Consensus 59 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 138 (643)
.++++.+..+++|++++++||||+||||++..|++.+....|. +.++++.+|. ...++.|+|.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~--------------~kV~LI~~Dt---~RigA~EQLr 306 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA--------------SKVALLTTDS---YRIGGHEQLR 306 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC--------------CeEEEEeCCc---cchhHHHHHH
Confidence 3566777788899999999999999999999999987554442 2478888875 3468999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHH-HHHHHHHHhcCC-----CEEEEeCCCCCCC
Q 006505 139 FSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERR-RVSIGFDVIHDP-----KVLILDEPTSGLD 212 (643)
Q Consensus 139 ~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerq-Rv~ia~aL~~~p-----~illlDEPtsgLD 212 (643)
+.++... .+........+......++.+.....+ .+...+++. .+.-..+++.++ .+|+||.++.+
T Consensus 307 ~~AeilG-Vpv~~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-- 378 (484)
T PRK06995 307 IYGKILG-VPVHAVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-- 378 (484)
T ss_pred HHHHHhC-CCeeccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--
Confidence 8776542 211111222333444455655433323 333222322 233444455554 68999999888
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEec
Q 006505 213 STSALQIIDMLKVMAETRGRTVILSIH 239 (643)
Q Consensus 213 ~~~~~~i~~~L~~l~~~~g~tvi~~~H 239 (643)
..+.+.++.... .+.+=++.|+
T Consensus 379 ----~~l~~i~~~f~~-~~~~g~IlTK 400 (484)
T PRK06995 379 ----DTLNEVVQAYRG-PGLAGCILTK 400 (484)
T ss_pred ----HHHHHHHHHhcc-CCCCEEEEeC
Confidence 334445555544 3555444454
No 467
>PRK02224 chromosome segregation protein; Provisional
Probab=98.76 E-value=1.7e-08 Score=121.58 Aligned_cols=78 Identities=31% Similarity=0.460 Sum_probs=67.4
Q ss_pred cCCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC-EEEEEecCCch
Q 006505 177 RVRGISGGERR------RVSIGFDVIHD-----P-KVLILDEPTSGLDSTSALQIIDMLKVMAETRGR-TVILSIHQPGF 243 (643)
Q Consensus 177 ~~~~LSGGerq------Rv~ia~aL~~~-----p-~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~-tvi~~~H~~~~ 243 (643)
.+..||||||+ |++++++++.+ | +++++||||++||+.....+.+.|+.+++. |. +||++||++.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~-~~~qviiish~~~- 855 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRL-GVEQIVVVSHDDE- 855 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhc-CCCeEEEEECChH-
Confidence 46789999999 89999888863 3 679999999999999999999999999764 54 8999999986
Q ss_pred HHHhhcCEEEEEeC
Q 006505 244 RIVKMFNSILMLAN 257 (643)
Q Consensus 244 ~i~~~~D~v~~L~~ 257 (643)
....+|+++.+.+
T Consensus 856 -~~~~ad~~~~~~~ 868 (880)
T PRK02224 856 -LVGAADDLVRVEK 868 (880)
T ss_pred -HHHhcCeeEEeec
Confidence 4578999999964
No 468
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.74 E-value=1.6e-07 Score=112.07 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=48.7
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 191 IGFDVIHDPKVLILDEPTSGL-DSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 191 ia~aL~~~p~illlDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++. |.+++++||+++. +.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~-g~~vil~TQs~~d-~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKA-NCLVLMATQSLSD-AAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-Hhh
Confidence 567788999999999999999 799999999999999874 8999999999974 554
No 469
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.72 E-value=3.1e-08 Score=97.15 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=62.1
Q ss_pred eeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCC--CCCCCCCHHHHH
Q 006505 60 VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRD--TLFPLLTVEETL 137 (643)
Q Consensus 60 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~--~l~~~lTv~E~l 137 (643)
..+=+.+.+++|+.++|+||||||||||+++|+|+.+|+.|.|.+++..-.....+..++++.|.+ ...+..|..+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 334455678899999999999999999999999999999999999774321112234466666543 346677888888
Q ss_pred HHHHHh
Q 006505 138 MFSAKL 143 (643)
Q Consensus 138 ~~~~~~ 143 (643)
..+.+.
T Consensus 94 ~~~lR~ 99 (186)
T cd01130 94 RSALRM 99 (186)
T ss_pred HHHhcc
Confidence 766543
No 470
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.68 E-value=5.7e-07 Score=85.29 Aligned_cols=131 Identities=12% Similarity=-0.030 Sum_probs=96.8
Q ss_pred HHHhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHH--HHHHHHHHHHHHHHHHHHHHHH
Q 006505 438 FLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLM--AFFHFLLLIWLILYTANSVVVC 515 (643)
Q Consensus 438 f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~--~f~~f~~~~~l~~~~~~s~~~~ 515 (643)
.-.|+..+.|-+..-. +++.|+++|++...-..+++.++..++.+. .|.+.+.. ..+.+++...+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677777777665 788999999999999999998877777754 48877632 2233333334444455566666
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHH
Q 006505 516 FSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFL 571 (643)
Q Consensus 516 i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~ 571 (643)
++...++.+..+ ....+..|+...||.+.|.+++|.|++|+.+++|++|+.|++=
T Consensus 92 ~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 665566665433 4466777888899999999999999999999999999999874
No 471
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.67 E-value=7.7e-09 Score=116.07 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=104.5
Q ss_pred eeece-EEEEecCeEEEEECCCCCCHHHHHHHH--hcCCCCCccEEEECCCcCCchhhc---ccEEEEccCCCCCCCCCH
Q 006505 60 VLDGV-SCKAKPWEILAIVGPSGAGKSSLLEIL--AGKLTPQSGSTFVNGSPIDKAQFR---KVSGYVTQRDTLFPLLTV 133 (643)
Q Consensus 60 iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~l--~g~~~~~~G~I~~~g~~~~~~~~~---~~i~yv~Q~~~l~~~lTv 133 (643)
-|+.+ .+=+++|..+.|.||+|||||||..-. .|..+..+..+++...+. +.+++ +..|+-.++..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~-~~~l~~~~~~~G~~~~~~~~~g---- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES-PQDIIKNARSFGWDLQKLVDEG---- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-HHHHHHHHHHcCCCHHHHhhcC----
Confidence 35554 567999999999999999999999866 466555666777765432 22222 23344333211000
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCC
Q 006505 134 EETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIG--FDVIHDPKVLILDEPTSGL 211 (643)
Q Consensus 134 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia--~aL~~~p~illlDEPtsgL 211 (643)
++.+ +. ..+. .....+++.+++++..++ ....+|+|++|||.|+ .++...|+..
T Consensus 84 --~l~~---~~-~~~~----~~~~~~~~~~~l~~~l~~-----i~~~ls~g~~qRVvIDSl~aL~~~~~~~--------- 139 (484)
T TIGR02655 84 --KLFI---LD-ASPD----PEGQDVVGGFDLSALIER-----INYAIRKYKAKRVSIDSVTAVFQQYDAV--------- 139 (484)
T ss_pred --ceEE---Ee-cCch----hccccccccCCHHHHHHH-----HHHHHHHhCCcEEEEeehhHhhhhcCch---------
Confidence 0000 00 0000 011123455566655544 3468999999999999 6666665543
Q ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-------H-HhhcCEEEEEe
Q 006505 212 DSTSALQIIDMLKVMAETRGRTVILSIHQPGFR-------I-VKMFNSILMLA 256 (643)
Q Consensus 212 D~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~-------i-~~~~D~v~~L~ 256 (643)
...+..+.++++.+++ .|+|+|+++|+++.. + ..++|.|+.|+
T Consensus 140 -~~~r~~l~~Li~~L~~-~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -SVVRREIFRLVARLKQ-IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -HHHHHHHHHHHHHHHH-CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999988876 599999999987521 1 44789999987
No 472
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.66 E-value=2.7e-08 Score=100.63 Aligned_cols=165 Identities=21% Similarity=0.173 Sum_probs=85.8
Q ss_pred eeece-EEEEecCeEEEEECCCCCCHHHHHHHHh--cCCCCCccEEEECCCcCCch--hhcccEEEEccCCCCCCCCCHH
Q 006505 60 VLDGV-SCKAKPWEILAIVGPSGAGKSSLLEILA--GKLTPQSGSTFVNGSPIDKA--QFRKVSGYVTQRDTLFPLLTVE 134 (643)
Q Consensus 60 iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~l~--g~~~~~~G~I~~~g~~~~~~--~~~~~i~yv~Q~~~l~~~lTv~ 134 (643)
-|+++ .+-+++|++++|.||+|+|||||...++ +. .+.++.+++........ ...+..++.+|+....+.+.+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~ 86 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVII 86 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEE
Confidence 35553 5679999999999999999999988654 43 44566677776432111 1122345544432111222221
Q ss_pred HHHHHH----HHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 006505 135 ETLMFS----AKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSG 210 (643)
Q Consensus 135 E~l~~~----~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsg 210 (643)
|.+... ... ...+.++..+++.++++..+... .+.++-.+..+++|||+
T Consensus 87 d~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~------------------------~~vvIDsl~~l~~~~~~-- 139 (229)
T TIGR03881 87 DALMKEKEDEWSL-RELSIEELLNKVIEAKKYLGYGH------------------------ARLVIDSMSAFWLDKPA-- 139 (229)
T ss_pred Ecccccccccccc-ccCCHHHHHHHHHHHHHhhccCc------------------------eEEEecCchhhhccChH--
Confidence 111000 000 01122333333444433332210 11223333444445542
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecCCch-------HHHhhcCEEEEEe
Q 006505 211 LDSTSALQIIDMLKVMAETRGRTVILSIHQPGF-------RIVKMFNSILMLA 256 (643)
Q Consensus 211 LD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~-------~i~~~~D~v~~L~ 256 (643)
...++...|++.+++.|.|+|+++|.... .+..++|.|+.|+
T Consensus 140 ----~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 140 ----MARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred ----HHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 34455555666656679999999996431 2345688888886
No 473
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.62 E-value=4e-08 Score=107.39 Aligned_cols=174 Identities=19% Similarity=0.210 Sum_probs=110.6
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCCcCCc---h------hhcccEEEEccC
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS---GSTFVNGSPIDK---A------QFRKVSGYVTQR 124 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~---G~I~~~g~~~~~---~------~~~~~i~yv~Q~ 124 (643)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.|-.+|+++.. . ..|..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45799999 9999999999999999999999999999998875 445555555422 1 124468999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illl 204 (643)
...+..+++.|++.+.+...... .+.|--+++ .+...++. -+++ ++ .+
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~-----g~~Vll~~D--sltr~a~A------~REi--------sl-----------~~ 268 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDK-----GHDVLLLVD--SLTRYAMA------QREI--------AL-----------SL 268 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhc-----cCCEEEeec--chhHHHhh------hhHH--------HH-----------hc
Confidence 99999999999998776543110 000100000 01111100 0111 11 12
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHHhC--C-CEEEEEecCCchHHHh-hcCEEEEEeCCeEEEe
Q 006505 205 DEP--TSGLDSTSALQIIDMLKVMAETR--G-RTVILSIHQPGFRIVK-MFNSILMLANGSVLHH 263 (643)
Q Consensus 205 DEP--tsgLD~~~~~~i~~~L~~l~~~~--g-~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~ 263 (643)
.|| +.|-.+..-..+-+++.+..+.. | .|.+-+..-+..++-+ .+|.+.-+-||+++-.
T Consensus 269 ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 269 GEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred CCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 344 33777777777888887764322 2 4666666544433322 5677777889999874
No 474
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.60 E-value=2.8e-07 Score=101.47 Aligned_cols=176 Identities=18% Similarity=0.245 Sum_probs=110.2
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCc-----------hhhcccEEEEccCC
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-----------AQFRKVSGYVTQRD 125 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~-----------~~~~~~i~yv~Q~~ 125 (643)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+...|+.-.+ ..+++.+.++.+.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 45789999 9999999999999999999999999999999988877776654321 11233344444433
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCH-HHHHHHHHHHHHhcCCCEEEE
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISG-GERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 126 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSG-GerqRv~ia~aL~~~p~illl 204 (643)
. ++.+-..-+ . ... .+.+.+..-|-+ .. + ....++- -|-+| .|+ +.+
T Consensus 229 ~-----~p~~r~~~~-~--------~a~-t~AE~frd~G~~-Vl---l---~~DslTr~A~A~R-Eis---------l~~ 276 (440)
T TIGR01026 229 Q-----SPLLRLKGA-Y--------VAT-AIAEYFRDQGKD-VL---L---LMDSVTRFAMAQR-EIG---------LAA 276 (440)
T ss_pred C-----CHHHHHHHH-H--------HHH-HHHHHHHHCCCC-EE---E---EEeChHHHHHHHH-HHH---------Hhc
Confidence 2 222211100 0 000 111222222311 00 0 0011110 01111 011 234
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHHhCCC-------EEEEEecCCchHHHhhcCEEEEEeCCeEEEecChhHH
Q 006505 205 DEP--TSGLDSTSALQIIDMLKVMAETRGR-------TVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLL 269 (643)
Q Consensus 205 DEP--tsgLD~~~~~~i~~~L~~l~~~~g~-------tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 269 (643)
.|| +.|+|+.....+.+++.+.... +. ||++.+||.+ ..++|++.-+.+|+++.++..++.
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~-~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGAS-GKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccC-CCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhhC
Confidence 565 4599999999999999998754 77 8999999975 357899999999999999887654
No 475
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.57 E-value=3.4e-07 Score=98.40 Aligned_cols=123 Identities=23% Similarity=0.432 Sum_probs=78.0
Q ss_pred EecCeEEEEECCCCCCHHHHHHHHhcCCC-CCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC
Q 006505 68 AKPWEILAIVGPSGAGKSSLLEILAGKLT-PQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLR 146 (643)
Q Consensus 68 i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~-~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~ 146 (643)
.+++.++.|.||+||||||+|++|.+... +..|.|..-+.++... .....+.+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~q~e--------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLINQRE--------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEEccc---------------------
Confidence 35788999999999999999999998665 3466666554443110 000111111110
Q ss_pred CCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006505 147 LPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDMLKVM 226 (643)
Q Consensus 147 ~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~L~~l 226 (643)
.|.. ..+ -.-+++.+|-.+|+++++||+. |+.++...++ .
T Consensus 177 ----------------vg~~-------------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----a 216 (343)
T TIGR01420 177 ----------------VGLD-------------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT----A 216 (343)
T ss_pred ----------------cCCC-------------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----H
Confidence 0000 000 1123556788899999999997 8888865444 3
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCEEEEE
Q 006505 227 AETRGRTVILSIHQPGFRIVKMFNSILML 255 (643)
Q Consensus 227 ~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 255 (643)
+. .|.+|+.|+|-.+ .....+|++-|
T Consensus 217 a~-tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 217 AE-TGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HH-cCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 44 4999999999976 34667777655
No 476
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.51 E-value=1.7e-07 Score=102.54 Aligned_cols=81 Identities=21% Similarity=0.193 Sum_probs=63.9
Q ss_pred hhhcccccccc-cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECC---CcCCc-------hh
Q 006505 45 LSKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNG---SPIDK-------AQ 113 (643)
Q Consensus 45 ~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g---~~~~~-------~~ 113 (643)
..+.+++++.+ .+..+++.++ .+.+||.++|+||||+|||||+++|+++.+|+.|.|.+.| +++.. ..
T Consensus 139 ~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~ 217 (450)
T PRK06002 139 AMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADN 217 (450)
T ss_pred CeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHh
Confidence 34556666666 3467888886 9999999999999999999999999999999999998865 44421 11
Q ss_pred hcccEEEEccCCC
Q 006505 114 FRKVSGYVTQRDT 126 (643)
Q Consensus 114 ~~~~i~yv~Q~~~ 126 (643)
.++.+++|+|.+.
T Consensus 218 r~rtI~vV~qsd~ 230 (450)
T PRK06002 218 LKKAVAVVATSDE 230 (450)
T ss_pred hCCeEEEEEcCCC
Confidence 2457999999875
No 477
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.50 E-value=3.1e-07 Score=109.42 Aligned_cols=139 Identities=18% Similarity=0.249 Sum_probs=86.8
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHH
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETL 137 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 137 (643)
..+=+|+++. +.+.++.|.|||++||||+||.++-..- +.+.-+|||-+..-+ ++.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-----------------lAq~G~~VPa~~a~i---~~~d~- 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-----------------LAQIGSFVPAESARI---GIVDR- 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-----------------HHhcCCceeccceEe---cccCe-
Confidence 3466777777 6778999999999999999999874410 111112444322111 11111
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCC---CCCCC
Q 006505 138 MFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI--HDPKVLILDEP---TSGLD 212 (643)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~--~~p~illlDEP---tsgLD 212 (643)
++.++|-. |....+.|-=+.....++..|- ++++++++||| |+.+|
T Consensus 653 ---------------------I~triga~--------d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~d 703 (854)
T PRK05399 653 ---------------------IFTRIGAS--------DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYD 703 (854)
T ss_pred ---------------------eeeccCcc--------cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcch
Confidence 11111211 2233466766666666666554 48999999999 88888
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCE
Q 006505 213 STSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNS 251 (643)
Q Consensus 213 ~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~~~D~ 251 (643)
..+ ....+++.+.+..|.+++++||.. ++.+++++
T Consensus 704 g~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 704 GLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred hHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 544 345566666664468999999995 56777765
No 478
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.48 E-value=2.4e-06 Score=101.77 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=43.4
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 006505 194 DVIHDPKVLILDEPTSGLD-STSALQIIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 194 aL~~~p~illlDEPtsgLD-~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~ 243 (643)
.+..+|.++++|||...|| +..+..+.+.++.+.+ .|..++++||+++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence 3456899999999999999 8889999999999976 48899999999863
No 479
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.45 E-value=4.7e-07 Score=109.27 Aligned_cols=79 Identities=23% Similarity=0.401 Sum_probs=69.8
Q ss_pred CcCCCCCHHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 006505 176 DRVRGISGGERRRVSIGFDVI------HD--PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVK 247 (643)
Q Consensus 176 ~~~~~LSGGerqRv~ia~aL~------~~--p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~~i~~ 247 (643)
..+..|||||+-.++||.+|+ .+ -++++|||||..||+.+...+++.|..+... +.+|++|||+. +..+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~e--el~e 887 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVE--ELKE 887 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChH--HHHH
Confidence 478899999999888877664 35 6899999999999999999999999999875 89999999997 4678
Q ss_pred hcCEEEEEeC
Q 006505 248 MFNSILMLAN 257 (643)
Q Consensus 248 ~~D~v~~L~~ 257 (643)
.+|.++.+..
T Consensus 888 ~~~~~i~V~k 897 (908)
T COG0419 888 RADVRIRVKK 897 (908)
T ss_pred hCCeEEEEEe
Confidence 9999999874
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.43 E-value=1.8e-07 Score=91.00 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=47.8
Q ss_pred cCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCch-hhc-ccEEEEccCCCCCCCCCHHHHHHH
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKA-QFR-KVSGYVTQRDTLFPLLTVEETLMF 139 (643)
Q Consensus 70 ~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~-~~~-~~i~yv~Q~~~l~~~lTv~E~l~~ 139 (643)
+||+++|+|+||||||||+++|+|++.+ +.++|.++... ..+ ...++.+|+...++..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999876 57888776432 222 235666776555555555555544
No 481
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.43 E-value=1.4e-07 Score=93.12 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=65.5
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHH
Q 006505 73 ILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQL 152 (643)
Q Consensus 73 ~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~ 152 (643)
+++|.||||||||||.++|++++ ..|. +.++++|+.+ ..++..+....... ....+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~----------------~~v~~~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK----------------VVIISQDSYY-KDLSHEELEERKNN-NYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC----------------eEEEEecccc-cccccccHHHhccC-CCCCCCccc
Confidence 58999999999999999999987 2222 2344444322 11222222211110 001111111
Q ss_pred HHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 006505 153 RARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDS 213 (643)
Q Consensus 153 ~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~ 213 (643)
.+...+.++.+...+.. ..+....|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 61 ~~~~~~~l~~l~~~~~~-----~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 FDLLISHLQDLKNGKSV-----EIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHHHHHCCCCE-----eccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 22334555555543322 23456788888776555 5688999999999999886
No 482
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.33 E-value=1.6e-06 Score=96.47 Aligned_cols=144 Identities=22% Similarity=0.266 Sum_probs=86.1
Q ss_pred eeece-EEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccE-EEECCCcCCchhhc---ccEEEEccCCCCCCCCCHH
Q 006505 60 VLDGV-SCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS-TFVNGSPIDKAQFR---KVSGYVTQRDTLFPLLTVE 134 (643)
Q Consensus 60 iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~-I~~~g~~~~~~~~~---~~i~yv~Q~~~l~~~lTv~ 134 (643)
-|+.+ .+=+.+|+++.|.|++|+|||||+..++.......+. +++.+++.. .+++ +++++..+
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~-~qi~~ra~rlg~~~~----------- 149 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESL-QQIKMRAIRLGLPEP----------- 149 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCH-HHHHHHHHHcCCChH-----------
Confidence 35555 4679999999999999999999999988765443333 355554321 1111 11111111
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHH-hcCCCEEEEeCCCCCC--
Q 006505 135 ETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDV-IHDPKVLILDEPTSGL-- 211 (643)
Q Consensus 135 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL-~~~p~illlDEPtsgL-- 211 (643)
++. +. .+.+- + .|..++ -.+|+++++|.-++=.
T Consensus 150 -~l~--------------------------~~------------~e~~~-~----~I~~~i~~~~~~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 150 -NLY--------------------------VL------------SETNW-E----QICANIEEENPQACVIDSIQTLYSP 185 (454)
T ss_pred -HeE--------------------------Ec------------CCCCH-H----HHHHHHHhcCCcEEEEecchhhccc
Confidence 000 00 00000 0 011111 1478999999876521
Q ss_pred --C-----HHHHHHHHHHHHHHHHhCCCEEEEEecCCch-------HHHhhcCEEEEEeCCe
Q 006505 212 --D-----STSALQIIDMLKVMAETRGRTVILSIHQPGF-------RIVKMFNSILMLANGS 259 (643)
Q Consensus 212 --D-----~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~-------~i~~~~D~v~~L~~G~ 259 (643)
+ ....++++..|.+++++.|.|++++.|.... .+..++|.|+.|+.++
T Consensus 186 ~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 186 DISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 1 2334567777888888899999999996431 1456899999998654
No 483
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.31 E-value=4.8e-06 Score=86.29 Aligned_cols=163 Identities=16% Similarity=0.101 Sum_probs=86.2
Q ss_pred cceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCCcCCchhhc-ccEEEEccCCCCCCCCCHHH
Q 006505 58 RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQ-SGSTFVNGSPIDKAQFR-KVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 58 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~-~G~I~~~g~~~~~~~~~-~~i~yv~Q~~~l~~~lTv~E 135 (643)
.+.|+++.+-+.+|+++.|.|++|+|||||+..++...... ...|.+-..+.+..++. +..+.....+...+. +.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~-~~-- 93 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLPD-TV-- 93 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCcccCC-cc--
Confidence 45789998999999999999999999999999887554322 22333322221111111 111100000100000 00
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVI--HDPKVLILDEPTSGLDS 213 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~--~~p~illlDEPtsgLD~ 213 (643)
. ... .++++++++.+.-.+.. .+-+ .....+ -.+-+..++.++ .+|+++++|..+.-.+.
T Consensus 94 --------~-~~~----~~~~~~~~~~~~~~~~l--~i~d-~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 94 --------F-IYT----LEEFDAAFDEFEGTGRL--FMYD-SFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred --------c-ccc----HHHHHHHHHHhcCCCcE--EEEc-CCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhcc
Confidence 0 001 12233333333110000 0001 111111 234445555554 47999999998764432
Q ss_pred -------H-HHHHHHHHHHHHHHhCCCEEEEEecCC
Q 006505 214 -------T-SALQIIDMLKVMAETRGRTVILSIHQP 241 (643)
Q Consensus 214 -------~-~~~~i~~~L~~l~~~~g~tvi~~~H~~ 241 (643)
. ...+++..|++++++.|.||++++|-.
T Consensus 156 ~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 156 ERASGDERKALDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 1 245778889999998999999999854
No 484
>PRK01889 GTPase RsgA; Reviewed
Probab=98.31 E-value=9.2e-07 Score=95.44 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=61.0
Q ss_pred eeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHH
Q 006505 61 LDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMF 139 (643)
Q Consensus 61 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 139 (643)
++.+.-.+++|+.++|+|+||+|||||+++|+|...+.+|+|.+++........++.+.+++|+..++++ ....++.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~l 262 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQL 262 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhcc
Confidence 4455556779999999999999999999999999999999999987543333345678999998877764 44555443
No 485
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.28 E-value=1.7e-06 Score=106.99 Aligned_cols=162 Identities=17% Similarity=0.287 Sum_probs=90.4
Q ss_pred eEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHH
Q 006505 64 VSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-QSGSTFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAK 142 (643)
Q Consensus 64 vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 142 (643)
+++..+++++++|.|++|+|||||++++++.... .+|.+++++..+... .. .+-.++... .+...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~--~~--~~~~~~~~~-------~~~~~--- 265 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS--ME--IYSSANPDD-------YNMKL--- 265 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc--hh--hcccccccc-------cchhH---
Confidence 4567788999999999999999999999776544 489999876322110 00 010111000 01000
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 006505 143 LRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIIDM 222 (643)
Q Consensus 143 ~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~ 222 (643)
...++.+.++++..++. +..+ ++.|+| |..++-+++||+- |... .++.
T Consensus 266 -------~l~~~~l~~il~~~~~~-----------~~~~-~~~~~~------L~~krvLLVLDdv----~~~~---~l~~ 313 (1153)
T PLN03210 266 -------HLQRAFLSEILDKKDIK-----------IYHL-GAMEER------LKHRKVLIFIDDL----DDQD---VLDA 313 (1153)
T ss_pred -------HHHHHHHHHHhCCCCcc-----------cCCH-HHHHHH------HhCCeEEEEEeCC----CCHH---HHHH
Confidence 00122334444443331 1122 566666 3355667888984 4333 3444
Q ss_pred HHHHHH--hCCCEEEEEecCCchHHHhh-cCEEEEEeCCeEEEecChhHHHHHHHHcCC
Q 006505 223 LKVMAE--TRGRTVILSIHQPGFRIVKM-FNSILMLANGSVLHHGTVDLLSVSLRMMGL 278 (643)
Q Consensus 223 L~~l~~--~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 278 (643)
|+...+ ..|.+||+|||+... +... +|+++.+.. =+.+++.+.|....+
T Consensus 314 L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 314 LAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 443322 248899999999753 3333 577665531 134567777766544
No 486
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.28 E-value=1.1e-06 Score=109.48 Aligned_cols=61 Identities=23% Similarity=0.473 Sum_probs=53.7
Q ss_pred cCCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 006505 177 RVRGISGGERRRVS----IGFD--------VIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQP 241 (643)
Q Consensus 177 ~~~~LSGGerqRv~----ia~a--------L~~~p~illlDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~~~H~~ 241 (643)
...+||||||||+. +|++ +..+|++++|||||+|||+.+...++++++++ |.++|++||..
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 46899999999996 4644 55899999999999999999999999999876 78899999885
No 487
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.25 E-value=1.4e-06 Score=77.05 Aligned_cols=59 Identities=25% Similarity=0.477 Sum_probs=48.3
Q ss_pred ccccc--cCCccccchHHHHH-hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 006505 580 KCLQY--IFGKCVVKGEDVLR-EAGYEEESSWRNLVIMVGFILIYRFISYVILRFRCSQRSF 638 (643)
Q Consensus 580 ~C~~~--~~~~c~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~~ 638 (643)
.|.-. ..|...++|++||+ +|+++.+|+|||++|+++|+++|.++.++++.+.+.....
T Consensus 18 ~C~~~Ga~~G~~~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~ 79 (103)
T PF06422_consen 18 VCAVVGAQPGSTYVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEKSG 79 (103)
T ss_pred ccCCCCCCCCccEEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 57432 23556689999997 7999999999999999999999999999999876654443
No 488
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.24 E-value=1.5e-05 Score=95.25 Aligned_cols=47 Identities=30% Similarity=0.330 Sum_probs=42.0
Q ss_pred HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 006505 195 VIHDPKVLILDEPTSGLD-STSALQIIDMLKVMAETRGRTVILSIHQPG 242 (643)
Q Consensus 195 L~~~p~illlDEPtsgLD-~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~ 242 (643)
+-.+|+++++|||+.+|| +..+..+.+.++.+.+. |.+++++||+++
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~-~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKK-NVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHH
Confidence 345899999999999999 78899999999999874 899999999986
No 489
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.23 E-value=5.7e-06 Score=89.61 Aligned_cols=143 Identities=22% Similarity=0.309 Sum_probs=83.6
Q ss_pred eece-EEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCccEE-EECCCcCCchhhc---ccEEEEccCCCCCCCCCHHH
Q 006505 61 LDGV-SCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGST-FVNGSPIDKAQFR---KVSGYVTQRDTLFPLLTVEE 135 (643)
Q Consensus 61 L~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I-~~~g~~~~~~~~~---~~i~yv~Q~~~l~~~lTv~E 135 (643)
|+.+ .+=+.+|+++.|.|++|+|||||+..++.......|.+ ++.+++.. .+++ +++++..++..++..
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~-~qi~~Ra~rlg~~~~~l~l~~e----- 144 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESP-EQIKLRADRLGISTENLYLLAE----- 144 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCH-HHHHHHHHHcCCCcccEEEEcc-----
Confidence 4443 35699999999999999999999999987765544454 34444321 1111 111111110000000
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC----CC
Q 006505 136 TLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTS----GL 211 (643)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPts----gL 211 (643)
..++++++ . .--.+|+++++|+-.+ .+
T Consensus 145 ------------------~~le~I~~-----------------------------~--i~~~~~~lVVIDSIq~l~~~~~ 175 (372)
T cd01121 145 ------------------TNLEDILA-----------------------------S--IEELKPDLVIIDSIQTVYSSEL 175 (372)
T ss_pred ------------------CcHHHHHH-----------------------------H--HHhcCCcEEEEcchHHhhcccc
Confidence 00000100 0 0124799999999643 33
Q ss_pred C-----HHHHHHHHHHHHHHHHhCCCEEEEEecCCch-------HHHhhcCEEEEEeCC
Q 006505 212 D-----STSALQIIDMLKVMAETRGRTVILSIHQPGF-------RIVKMFNSILMLANG 258 (643)
Q Consensus 212 D-----~~~~~~i~~~L~~l~~~~g~tvi~~~H~~~~-------~i~~~~D~v~~L~~G 258 (643)
| ....+++...|.+++++.|.|++++.|-... .+..++|.|+.++.+
T Consensus 176 ~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 176 TSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 3 2334566777888888889999999884221 256788999988743
No 490
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.22 E-value=0.00044 Score=71.39 Aligned_cols=231 Identities=16% Similarity=0.218 Sum_probs=118.5
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHH-HHHHHHHHhccCCCC--hhhHHHHHHHH----------------HHHHHHHHH
Q 006505 369 ILTHRFSKNIFRTKELFACRTIQMLI-SGIVLGSIFHNVKDD--LTGTEEKVGLF----------------AFILTFLLS 429 (643)
Q Consensus 369 ~l~~R~~~~~~Rd~~~~~~r~~~~i~-~~li~G~~f~~l~~~--~~~~~~r~g~l----------------f~~~~~~~~ 429 (643)
.+.|+.++..+|+|.....-.+..++ ..+..-..+.....+ ........+.. ++......+
T Consensus 2 ~i~~~E~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 81 (277)
T PF12679_consen 2 AIAKKEFRELFRSRRFWILLIIFLLLLFILAFYPILQAQAQSQAFQTQELIPALENLQSFNFAESAKFFFSIVSFLGPLF 81 (277)
T ss_pred hhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 57899999999999887776666555 222222222211111 11111111110 011111111
Q ss_pred HHHhHHHHHHHhhHHHHHHhCCCC--------CChHHHHHHHHHHHHHHHHH---HH-HHhhh-hhhcc-ccccccHHHH
Q 006505 430 CTTEALPIFLQEREILMKETSCGS--------YRVSSYAIANGLVYLPFLLI---LA-ILFSV-PLYWI-VGLNPNLMAF 495 (643)
Q Consensus 430 ~~~~~~~~f~~er~v~~rE~~~~~--------Y~~~~y~la~~l~~lP~~~~---~~-~if~~-i~Y~m-~gl~~~~~~f 495 (643)
..+ .--..+-+|+++|. ++...++++|.++-....++ .. +.+.+ ..++. .|.+.+...+
T Consensus 82 ~~~-------l~~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (277)
T PF12679_consen 82 AII-------LASDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSF 154 (277)
T ss_pred HHH-------HHHHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence 111 12334455555542 57789999999998877432 11 11111 12222 3445555555
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhcccc-CCCCccchh-----hhhhccChhHHH
Q 006505 496 FHFLLLIWLILY---TANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFI-SKHGIPDYW-----IFMHYISLFKYP 566 (643)
Q Consensus 496 ~~f~~~~~l~~~---~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i-~~~~ip~~~-----~Wl~yiSp~~y~ 566 (643)
+...+...+..+ +..+++.++|+++++...|..+...+............ ..++. .+. ..+.+++|..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~- 232 (277)
T PF12679_consen 155 LLLLLLFVLLLLAVLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANS-EALPWVISPNLSFLSPFSP- 232 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHhHHHHcChHHH-
Confidence 554443333333 45899999999999988888766554443322222222 11111 122 23466666543
Q ss_pred HHHHHHHhhCCCCccccccCCccccchHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 006505 567 FEQFLINEFSDSDKCLQYIFGKCVVKGEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRF 631 (643)
Q Consensus 567 ~eal~~nef~~~~~C~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 631 (643)
++.+......+.. .....|.++++++++.+++..+++..+++
T Consensus 233 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~v~l~la~~~F~r 274 (277)
T PF12679_consen 233 FNLLIGSILGGGF-----------------------VWLSTWPSLLILLAYTLVFLALAYYRFQR 274 (277)
T ss_pred HHHHHHHhhcccc-----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222222222110 00456888999999999999998855543
No 491
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.20 E-value=0.00054 Score=70.82 Aligned_cols=207 Identities=14% Similarity=0.124 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHH-HHHH-H-HhHHHHH
Q 006505 363 RFKETIILTHRFSKNIFRTKEL-FACRTIQMLISGIVLGSIFHNVKDDLTGTEEKVGLFAFILTF-LLSC-T-TEALPIF 438 (643)
Q Consensus 363 ~~~Q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~~li~G~~f~~l~~~~~~~~~r~g~lf~~~~~-~~~~-~-~~~~~~f 438 (643)
.++-.+.|.+|+.+..+|+... ..--++..+++.++++.+|-.+-... .-+..-.+...+.. .++. + ..+...+
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~--~~~~~~~l~~G~~~w~f~~~~i~~~~~s~ 93 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP--GLNFLAYLLAGLILWFFFSEAISEGAGSV 93 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 3566778999999999988652 23344444444444444442221111 11111111111111 1111 1 2244556
Q ss_pred HHhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006505 439 LQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFSVPLYWIVGLNPNLMAFFHFLLLIWLILYTANSVVVCFSA 518 (643)
Q Consensus 439 ~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~ 518 (643)
.+...++.|-+ .++..+.+++++.++-...+..++....+-|.-+.. +. +.+.......+..+.+.++|.++|.
T Consensus 94 ~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s~-~~l~~~~~l~~l~l~~~g~~l~~a~ 167 (263)
T COG1682 94 VANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-SW-HWLLLLPALLLLILFSVGLGLILAS 167 (263)
T ss_pred hhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666665432 388899999999998888777766666655555444 33 3444444556666777788888888
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhccChhHHHHHHHHHHhhCC
Q 006505 519 LVPNFIVGNSVISGVMGSFFLFSGYFISKHGIPDYWIFMHYISLFKYPFEQFLINEFSD 577 (643)
Q Consensus 519 ~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~y~~eal~~nef~~ 577 (643)
++.-+.--.-+.+.++-+++..+|.+-+.+.+|.-++|+.++||+.+-.|.+=..-+++
T Consensus 168 l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~ 226 (263)
T COG1682 168 LGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG 226 (263)
T ss_pred HhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 77555544455566677788899999999999999999999999999999886655554
No 492
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.19 E-value=2.5e-05 Score=84.43 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC-----CHHHHHH----------HHHHHHHHHHhCCCEEEEEecCCch
Q 006505 179 RGISGGERRRVSIGFDVIHDPKVLILDEPTSGL-----DSTSALQ----------IIDMLKVMAETRGRTVILSIHQPGF 243 (643)
Q Consensus 179 ~~LSGGerqRv~ia~aL~~~p~illlDEPtsgL-----D~~~~~~----------i~~~L~~l~~~~g~tvi~~~H~~~~ 243 (643)
..=||-.-|=.+|..||=..+++||+||=||+- |...+.- +.+.++++.++.|.+.|+++--..
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsg- 399 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSG- 399 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccch-
Confidence 357999999999999999999999999999964 4444433 467788887778998888886655
Q ss_pred HHHhhcCEEEEEeCCe
Q 006505 244 RIVKMFNSILMLANGS 259 (643)
Q Consensus 244 ~i~~~~D~v~~L~~G~ 259 (643)
+.++.+|+|++|++=+
T Consensus 400 dy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 400 DYFDVADRVIMMDEYR 415 (448)
T ss_pred hhHhhCCEEEEecCcc
Confidence 5889999999998744
No 493
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.18 E-value=0.00088 Score=68.45 Aligned_cols=219 Identities=12% Similarity=0.133 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcc---CC-CChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Q 006505 368 IILTHRFSKNIFRTKELFACRTIQMLISGIVLGSIFHN---VK-DDLTGTEEKVGLFAFILTFLLSCTTEALPIFLQERE 443 (643)
Q Consensus 368 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~li~G~~f~~---l~-~~~~~~~~r~g~lf~~~~~~~~~~~~~~~~f~~er~ 443 (643)
+.+.||.++...|.|.....-.+..++.|+.. ..|.+ .. .+.++.+.-.+.. ...+......-+ -.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~~p~l~-------~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLA--PWVFLFLIPAIT-------MR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHH--HHHHHHHHHHHH-------HH
Confidence 46889999999999998887777777777442 22211 11 1112222211111 111111111112 24
Q ss_pred HHHHHhCCCCC--------ChHHHHHHHHHHHHHHHHHHHH---Hhhhhhhcccc--ccccHHHHHHHHHHHHHHHHHHH
Q 006505 444 ILMKETSCGSY--------RVSSYAIANGLVYLPFLLILAI---LFSVPLYWIVG--LNPNLMAFFHFLLLIWLILYTAN 510 (643)
Q Consensus 444 v~~rE~~~~~Y--------~~~~y~la~~l~~lP~~~~~~~---if~~i~Y~m~g--l~~~~~~f~~f~~~~~l~~~~~~ 510 (643)
.+.+||++|.. +...+.++|.++-+-..++..+ ++....++... -..+...++...+..++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 44556666653 4678899999988655544332 22222222211 12245555555555566677888
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCc--cchhhhhhccChhHHHHHHHHHHhhCCCCccccccCCc
Q 006505 511 SVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFISKHGI--PDYWIFMHYISLFKYPFEQFLINEFSDSDKCLQYIFGK 588 (643)
Q Consensus 511 s~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~i--p~~~~Wl~yiSp~~y~~eal~~nef~~~~~C~~~~~~~ 588 (643)
++|.++|+++.+...|..++..+. +.++.|+.. ..++ |++.+|+.|+||..|-.+.. ++.
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~--~~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-----~g~---------- 213 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLC--FLFYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-----RGV---------- 213 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHH--HHHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-----cCc----------
Confidence 999999999999888765443322 222223221 2333 78899999999977743322 111
Q ss_pred cccchHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 006505 589 CVVKGEDVLREAGYEEESSWRNLVIMVGFILIYRFISYVILRF 631 (643)
Q Consensus 589 c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 631 (643)
. .|.++...+.+.+++..++...++.
T Consensus 214 --i---------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 214 --I---------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred --c---------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 1467777777777777777666654
No 494
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.15 E-value=2.9e-06 Score=85.94 Aligned_cols=74 Identities=26% Similarity=0.370 Sum_probs=52.1
Q ss_pred ecCeEEEEECCCCCCHHHHHHHHhcCCCCCccE----EEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 006505 69 KPWEILAIVGPSGAGKSSLLEILAGKLTPQSGS----TFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLR 144 (643)
Q Consensus 69 ~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~----I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~ 144 (643)
.+..+++|.||||||||||.+.|++++++.+|. |.+++..... ..+...+++++.+ .++..++.+.+.+...++
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~-~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l~ 108 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDN-AVLDAHGLRPRKG-APETFDVAGLAALLRRLR 108 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCH-HHHHhcccccccC-CCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999999999999998 5556543322 2333457776543 345667777666544443
No 495
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.15 E-value=4.6e-06 Score=91.58 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=71.1
Q ss_pred ccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECC---CcCCc---hhhc---ccEEEE-----
Q 006505 57 VRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTP-QSGSTFVNG---SPIDK---AQFR---KVSGYV----- 121 (643)
Q Consensus 57 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~-~~G~I~~~g---~~~~~---~~~~---~~i~yv----- 121 (643)
...+++++ +.+.+||.++|+|+||+|||||+++|+|..++ +.|.|.+.| +++.. ..++ ...+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 35688988 99999999999999999999999999998844 457777755 44421 1111 234455
Q ss_pred ccCCC--CCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCh
Q 006505 122 TQRDT--LFPLLTVEETLMFSAKLRLRL--PQAQLRARVKSLVKELGLE 166 (643)
Q Consensus 122 ~Q~~~--l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgl~ 166 (643)
+|++. +.+.+ +...+.-..+.+... ...+...++.+++++++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 78752 34433 444444333322111 2345567888899998884
No 496
>PRK08149 ATP synthase SpaL; Validated
Probab=98.14 E-value=3.4e-06 Score=92.31 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=56.9
Q ss_pred cccceeeceEEEEecCeEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCCcCCc--h-----hhcccEEEEccCC
Q 006505 56 GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQS---GSTFVNGSPIDK--A-----QFRKVSGYVTQRD 125 (643)
Q Consensus 56 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~---G~I~~~g~~~~~--~-----~~~~~i~yv~Q~~ 125 (643)
.+..+++++ +.+.+||.++|+|+||+|||||+++|++...++. |.|-.+|+++.. . ...+++++|....
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 345799999 9999999999999999999999999999998886 999999988743 1 1235677777653
No 497
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.13 E-value=2.3e-06 Score=83.79 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=31.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCCcCC
Q 006505 71 WEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPID 110 (643)
Q Consensus 71 Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G~I~~~g~~~~ 110 (643)
|++++|+||||||||||+++|++...+ .+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECC
Confidence 789999999999999999999998765 5777776554
No 498
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.13 E-value=1.6e-06 Score=68.89 Aligned_cols=38 Identities=34% Similarity=0.602 Sum_probs=30.8
Q ss_pred eeceEEEEec-CeEEEEECCCCCCHHHHHHHHhcCCCCC
Q 006505 61 LDGVSCKAKP-WEILAIVGPSGAGKSSLLEILAGKLTPQ 98 (643)
Q Consensus 61 L~~vs~~i~~-Ge~~aIlG~nGaGKSTLL~~l~g~~~~~ 98 (643)
.++.++++.+ |++++|.|||||||||||++|.=.+-+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4556777776 5699999999999999999998666553
No 499
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.11 E-value=9.1e-06 Score=93.77 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=71.1
Q ss_pred cCeEEEEECCCCCCHHHHHHHHhcCCCCCcc--------EEEECCCcCCchhhcccEEEEccCCCCCCCCCHHHHHHHHH
Q 006505 70 PWEILAIVGPSGAGKSSLLEILAGKLTPQSG--------STFVNGSPIDKAQFRKVSGYVTQRDTLFPLLTVEETLMFSA 141 (643)
Q Consensus 70 ~Ge~~aIlG~nGaGKSTLL~~l~g~~~~~~G--------~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~ 141 (643)
..+.++|+||||+|||||.+++.+..++..| -|.+||..+.. ..+. + ++-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~~~----------------i-~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DPRE----------------V-TNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CHHH----------------H-hHHhcC-
Confidence 3457999999999999999999998765433 36666544310 0000 0 011111
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCChhhhhhhcCCCcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 006505 142 KLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILDEPTSGLDSTSALQIID 221 (643)
Q Consensus 142 ~~~~~~~~~~~~~~v~~~l~~lgl~~~~~~~vg~~~~~~LSGGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~ 221 (643)
...+...+.+.+.++..|+.+.. +..+..+||| +|+||| +..||+..+..+.+
T Consensus 235 -----~~~~~~~~~a~~~l~~~gl~~~~-----~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 235 -----SVHDPIYQGARRDLAETGVPEPK-----TGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----CccHHHHHHHHHHHHHcCCCchh-----cCchhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 01111123345567778876554 2355678888 999999 79999999999998
Q ss_pred HHHH
Q 006505 222 MLKV 225 (643)
Q Consensus 222 ~L~~ 225 (643)
.|++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8864
No 500
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.11 E-value=2.8e-06 Score=88.74 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=52.4
Q ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCCcCC--chhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 006505 72 EILAIVGPSGAGKSSLLEILAGKLT--PQSGSTFVNGSPID--KAQFRKVSGYVTQRDTLFPLLTVEETLMFSAKLR 144 (643)
Q Consensus 72 e~~aIlG~nGaGKSTLL~~l~g~~~--~~~G~I~~~g~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~~~ 144 (643)
.++||.||||||||||.++|.+++. |++|+|.+-+.+-- ....++..++. |+..+++.+++.+.+.+-..++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 6999999999999999999999987 67888776444321 12223345543 6666778888888887766554
Done!