Query 006505
Match_columns 643
No_of_seqs 263 out of 3180
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 18:47:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006505.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2131-2134//hhsearch_pdb/006505hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 379.7 24.8 220 45-271 4-228 (359)
2 3rlf_A Maltose/maltodextrin im 1.0 1 1 379.6 27.2 219 46-271 4-223 (381)
3 3tui_C Methionine import ATP-b 1.0 1 1 376.9 27.3 220 44-270 23-252 (366)
4 1z47_A CYSA, putative ABC-tran 1.0 1 1 371.7 27.4 221 44-271 13-235 (355)
5 2yyz_A Sugar ABC transporter, 1.0 1 1 371.7 24.8 219 46-271 4-223 (359)
6 2it1_A 362AA long hypothetical 1.0 1 1 371.2 26.3 219 46-271 4-223 (362)
7 1g29_1 MALK, maltose transport 1.0 1 1 371.1 27.0 219 46-271 4-229 (372)
8 1oxx_K GLCV, glucose, ABC tran 1.0 1 1 371.0 22.7 219 46-271 4-230 (353)
9 1v43_A Sugar-binding transport 1.0 1 1 370.6 23.9 219 46-271 12-231 (372)
10 3d31_A Sulfate/molybdate ABC t 1.0 1 1 364.8 24.5 213 47-270 3-216 (348)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=379.69 Aligned_cols=220 Identities=27% Similarity=0.430 Sum_probs=197.3
Q ss_pred HHHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC----CC-HHHCCCEE
Q ss_conf 31001232321342100104799846809999889998889999989659899961899999708----90-31103478
Q 006505 45 LSKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPI----DK-AQFRKVSG 119 (643)
Q Consensus 45 ~~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~----~~-~~~r~~~~ 119 (643)
+++++++.+.++.+.+|+|+|+.+++||+++|+|||||||||||++|+|+.+|++|+|.++|+++ .. ...++.+|
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCHHHCCEE
T ss_conf 89999699998998889753899959989999999980599999999669989973899999997545566554108889
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98259888999999999999987049998999999999999993990122311079767877978989999999984099
Q 006505 120 YVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDP 199 (643)
Q Consensus 120 yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p 199 (643)
||+|+..+++++||+||+.|+...+ ..++++.+++++++++.+||++.. +..+..|||||||||+||+||+.+|
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~-----~r~~~~LSGGq~QRValArAL~~~P 157 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNG-KGRTAQERQRIEAMLELTGISELA-----GRYPHELSGGQQQRAALARALAPDP 157 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTS-SCCSHHHHHHHHHHHHHHTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHH-----CCCHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 9907875789999999999999876-998689999999999886990375-----5892457999999999999997399
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 878981999999999999999999999971998999980588558986268799981982898539567999
Q 006505 200 KVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 200 ~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
++|||||||+|||+.++.++++.++++.++.|+|+|+++|+++ ++..++|++++|++|+++..|+++++..
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 9999969743679999999999999999857998999949999-9998799999998998999818999974
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=379.59 Aligned_cols=219 Identities=30% Similarity=0.471 Sum_probs=199.6
Q ss_pred HHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-HHHCCCEEEECCC
Q ss_conf 100123232134210010479984680999988999888999998965989996189999970890-3110347898259
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~-~~~r~~~~yV~Q~ 124 (643)
++++++.+.++...+|+|+|+.+++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.+|||+|+
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~ 83 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 83 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTT
T ss_pred EEEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECC
T ss_conf 99984899989999996568998799899999689955999999997699889719999999998799778888999068
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 88899999999999998704999899999999999999399012231107976787797898999999998409987898
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illl 204 (643)
..+++++||+||+.|+...+ +.++++.+++++++++.++|.+.. +..+..|||||||||+||+||+.+|++|||
T Consensus 84 ~~l~p~ltV~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~-----~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 84 YALYPHLSVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAHLL-----DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp CCCCTTSCHHHHHTHHHHHT-TCCHHHHHHHHHHHHHHTTCGGGT-----TCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHH-----CCCHHHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 75789999999999999775-999899999999999885994165-----399257999999999999999819999999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 1999999999999999999999971998999980588558986268799981982898539567999
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 205 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
||||++||+..+.++.+.|+++.++.|+|+|+++|+++ ++..++|++++|++|+++..|+++++..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 89876799999999999999999867988999988999-9998699999998998999838999971
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=376.89 Aligned_cols=220 Identities=27% Similarity=0.439 Sum_probs=198.3
Q ss_pred HHHHCCCCCCCCCC----CCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC------HH
Q ss_conf 43100123232134----210010479984680999988999888999998965989996189999970890------31
Q 006505 44 ELSKLEEAADSDGV----RRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQ 113 (643)
Q Consensus 44 ~~~~~~~~~~~~~~----~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~------~~ 113 (643)
++++++++.+.++. ..+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred CEEEEEEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHH
T ss_conf 65999848999389887737887469998489899999589955999999996699999629999999987589879998
Q ss_pred HCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 10347898259888999999999999987049998999999999999993990122311079767877978989999999
Q 006505 114 FRKVSGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGF 193 (643)
Q Consensus 114 ~r~~~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~ 193 (643)
.|+.+|||+|+..+++.+||+||+.++.... +.++++.+++++++++.+||.+.. +..+..|||||||||+||+
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~-~~~~~~~~~~v~~lL~~vgL~~~~-----~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGDKH-----DSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCGGGT-----TCCTTTSCHHHHHHHHHHH
T ss_pred HHCCEEEEECCCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHH-----CCCHHHCCHHHHHHHHHHH
T ss_conf 7386899927875688889999999999865-998789999999999976993476-----1994558999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 98409987898199999999999999999999997199899998058855898626879998198289853956799
Q 006505 194 DVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 194 aL~~~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~ 270 (643)
||+.+|++|||||||+|||+.++..+++.|++++++.|+||++++|+++ .+.+++|++++|++|+++..|+++++.
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 9966999999979875689999999999999999737999999956899-999969999999899899975899997
No 4
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=1.00 E-value=1 Score=371.75 Aligned_cols=221 Identities=25% Similarity=0.477 Sum_probs=198.6
Q ss_pred HHHHCCCCCCCC-CCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-HHHCCCEEEE
Q ss_conf 431001232321-34210010479984680999988999888999998965989996189999970890-3110347898
Q 006505 44 ELSKLEEAADSD-GVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYV 121 (643)
Q Consensus 44 ~~~~~~~~~~~~-~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~-~~~r~~~~yV 121 (643)
.+.+++++.+.+ +.+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++||
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 92 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLV 92 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEE
T ss_pred CEEEEEEEEEEECCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCEEEE
T ss_conf 66999979999759978996348999799799999899970999999996799889619999999998687645748999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 25988899999999999998704999899999999999999399012231107976787797898999999998409987
Q 006505 122 TQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKV 201 (643)
Q Consensus 122 ~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~i 201 (643)
+|+..+++++||+||+.|+...+ +.++++.+++++++++.++|++.. +..+..|||||||||+||+||+.+|++
T Consensus 93 ~Q~~~l~~~ltv~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~-----~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 93 FQNYALFQHMTVYDNVSFGLREK-RVPKDEMDARVRELLRFMRLESYA-----NRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp CGGGCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred ECCCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHH-----CCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 26863578988999999999774-998789999999999876994586-----099201899999999999999739998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 8981999999999999999999999971998999980588558986268799981982898539567999
Q 006505 202 LILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 202 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
|||||||+|||+.++.++.+.|+++.++.|+|+|+++|+++ ++..++|++++|++|+++..|+++++..
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99969743689999999999999999866999999979999-9998699999998999999859999974
No 5
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=371.71 Aligned_cols=219 Identities=28% Similarity=0.483 Sum_probs=194.9
Q ss_pred HHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-HHHCCCEEEECCC
Q ss_conf 100123232134210010479984680999988999888999998965989996189999970890-3110347898259
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~-~~~r~~~~yV~Q~ 124 (643)
.+++++.+.++.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.+|||+|+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (359)
T 2yyz_A 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQN 83 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSS
T ss_pred EEEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCEEEEECC
T ss_conf 99997999989988896558998699899999689823999999997799889629999999998798645848999068
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 88899999999999998704999899999999999999399012231107976787797898999999998409987898
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illl 204 (643)
..+++++||+||+.|+...+ +.++++.+++++++++.++|++.. +..+..|||||||||+||+||+.+|++|||
T Consensus 84 ~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~-----~r~~~~LSgGq~QRvalArAL~~~P~lLLL 157 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDNLL-----DRKPTQLSGGQQQRVALARALVKQPKVLLF 157 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSS-CSHHHHTTHHHHHHHHHTTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHH-----CCCHHHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 64579988999999999765-998799999999999886995376-----289346999999999999999719998999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 1999999999999999999999971998999980588558986268799981982898539567999
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 205 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
||||++||+.++.++.+.|+++.++.|+|+|+++|+++ ++..++|++++|++|+++..|+++++..
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 89753689999999999999999856998999918999-9998699999998998999679999973
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=371.19 Aligned_cols=219 Identities=30% Similarity=0.504 Sum_probs=196.2
Q ss_pred HHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-HHHCCCEEEECCC
Q ss_conf 100123232134210010479984680999988999888999998965989996189999970890-3110347898259
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~-~~~r~~~~yV~Q~ 124 (643)
.+++++.+.++.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.++||+|+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQN 83 (362)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTT
T ss_pred EEEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECC
T ss_conf 99996999989978897558999799899999999935999999996699888509999999998699757848999467
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 88899999999999998704999899999999999999399012231107976787797898999999998409987898
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illl 204 (643)
..+++++||+||+.|+...+ +.++++.+++++++++.++|++.. +..+..|||||||||+||+||+.+|+++||
T Consensus 84 ~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~-----~r~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELR-KAPREEIDKKVREVAKMLHIDKLL-----NRYPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTTCT-----TCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHH-----HCCHHHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 64578987999999998764-898799999999999885990476-----089303899999999999999729999999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 1999999999999999999999971998999980588558986268799981982898539567999
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 205 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
||||+|||+.++.++.+.|+++.++.|+|+|+++|+++ ++..++|++++|++|+++..|+++++..
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 89543689999999999999999757989999888889-9998699999998998999769999973
No 7
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=1.00 E-value=1 Score=371.10 Aligned_cols=219 Identities=27% Similarity=0.475 Sum_probs=196.0
Q ss_pred HHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-------HHHCCCE
Q ss_conf 100123232134210010479984680999988999888999998965989996189999970890-------3110347
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-------AQFRKVS 118 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~-------~~~r~~~ 118 (643)
.+++++.+.++.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~i 83 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EEEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCCCHHHCCE
T ss_conf 99996999989988883138999699899999999937999999997699899638999999986544434588767988
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89825988899999999999998704999899999999999999399012231107976787797898999999998409
Q 006505 119 GYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHD 198 (643)
Q Consensus 119 ~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~ 198 (643)
|||+|+..+++++||+||+.|+...+ +.++++.+++++++++.++|++.. +..+..|||||||||+||+||+.+
T Consensus 84 g~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~-----~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 84 AMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTELL-----NRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGGGT-----TCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHH-----CCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99927875689988999999999775-999799999999999987991376-----089112999999999999998658
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9878981999999999999999999999971998999980588558986268799981982898539567999
Q 006505 199 PKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 199 p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
|++|||||||++||+.++.++.+.|+++.++.|+|+|+++|+++ ++..++|++++|++|+++..|+++++..
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99999879875689999999999999999865989999889989-9998699999995998998489999973
No 8
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=1.00 E-value=1 Score=370.97 Aligned_cols=219 Identities=26% Similarity=0.436 Sum_probs=195.4
Q ss_pred HHCCCCCCCCCCCC--EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC------HHHCCC
Q ss_conf 10012323213421--0010479984680999988999888999998965989996189999970890------311034
Q 006505 46 SKLEEAADSDGVRR--VLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK------AQFRKV 117 (643)
Q Consensus 46 ~~~~~~~~~~~~~~--iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~------~~~r~~ 117 (643)
.+++++.+.++.+. +|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.
T Consensus 4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ 83 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRK 83 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSC
T ss_pred EEEEEEEEEECCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCCCCHHHCC
T ss_conf 99986999989982014813489997998999997999709999999967998884099999999865554568764397
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 78982598889999999999999870499989999999999999939901223110797678779789899999999840
Q 006505 118 SGYVTQRDTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIH 197 (643)
Q Consensus 118 ~~yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~ 197 (643)
+|||+|+..+++++||+||+.|+...+ +.++++.+++++++++.++|++.. +..+..|||||||||+||+||+.
T Consensus 84 ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~-----~~~~~~LSGGq~QRvalAraL~~ 157 (353)
T 1oxx_K 84 IGMVFQTWALYPNLTAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHHVL-----NHFPRELSGAQQQRVALARALVK 157 (353)
T ss_dssp EEEEETTSCCCTTSCHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHH-----CCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 899947874679989999999999875-999899999999999886990375-----09935699999999999999970
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99878981999999999999999999999971998999980588558986268799981982898539567999
Q 006505 198 DPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 198 ~p~illlDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
+|++|||||||+|||+.++.++.+.|+++.++.|+|+|+++|+++ ++..++|++++|++|+++..|+++++..
T Consensus 158 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 999999979743489999999999999999866998999928999-9998699999998998999769999974
No 9
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=1.00 E-value=1 Score=370.62 Aligned_cols=219 Identities=25% Similarity=0.427 Sum_probs=196.3
Q ss_pred HHCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-HHHCCCEEEECCC
Q ss_conf 100123232134210010479984680999988999888999998965989996189999970890-3110347898259
Q 006505 46 SKLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQR 124 (643)
Q Consensus 46 ~~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~-~~~r~~~~yV~Q~ 124 (643)
.+++++.+.++.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.+|||+|+
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 91 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 91 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECC
T ss_conf 99998999989978886548999799899999999986999999997699888409999999998798656858999167
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 88899999999999998704999899999999999999399012231107976787797898999999998409987898
Q 006505 125 DTLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLIL 204 (643)
Q Consensus 125 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illl 204 (643)
..+|+++||+||+.|+...+ +.++++.+++++++++.++|++.. +..+..|||||||||+||+||+.+|++|||
T Consensus 92 ~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~-----~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 92 YAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEELL-----NRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp -----CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGGT-----TSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHH-----CCCHHHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 64579988999999888764-898799999999999985992486-----399103999999999999999619999997
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 1999999999999999999999971998999980588558986268799981982898539567999
Q 006505 205 DEPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLSV 271 (643)
Q Consensus 205 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~~ 271 (643)
||||++||+.++.++.+.|+++.++.|.|+|+++|+++ ++..++|++++|++|+++..|+++++..
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 19874579999999999999999728988999949999-9998699999998998998589999973
No 10
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=1.00 E-value=1 Score=364.79 Aligned_cols=213 Identities=29% Similarity=0.490 Sum_probs=190.4
Q ss_pred HCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-HHHCCCEEEECCCC
Q ss_conf 00123232134210010479984680999988999888999998965989996189999970890-31103478982598
Q 006505 47 KLEEAADSDGVRRVLDGVSCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSGSTFVNGSPIDK-AQFRKVSGYVTQRD 125 (643)
Q Consensus 47 ~~~~~~~~~~~~~iL~~is~~i~~Ge~~ai~GpsGsGKSTLl~~L~g~~~~~~G~I~~~g~~~~~-~~~r~~~~yV~Q~~ 125 (643)
+++++.+.++.+ +|+++|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++||+|+.
T Consensus 3 ~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~ 81 (348)
T 3d31_A 3 EIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNY 81 (348)
T ss_dssp EEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTC
T ss_pred EEEEEEEEECCE-EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCEEEEECCC
T ss_conf 999899997997-9834579986998999999998109999999976998998589999999987866438689992676
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88999999999999987049998999999999999993990122311079767877978989999999984099878981
Q 006505 126 TLFPLLTVEETLMFSAKLRLRLPQAQLRARVKSLVKELGLEHVAMARVGDDRVRGISGGERRRVSIGFDVIHDPKVLILD 205 (643)
Q Consensus 126 ~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~g~~~~~~lSgGerqRvsia~aL~~~p~illlD 205 (643)
.+++++||+||+.|+...+. .+++ ++++++++.++|++.. +..+..||||||||++||+||+.+|++|+||
T Consensus 82 ~l~~~ltv~enl~~~~~~~~-~~~~---~~v~~~l~~~~L~~~~-----~~~~~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 82 SLFPHMNVKKNLEFGMRMKK-IKDP---KRVLDTARDLKIEHLL-----DRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp CCCTTSCHHHHHHHHHHHHC-CCCH---HHHHHHHHHTTCTTTT-----TSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHCC-CCHH---HHHHHHHHHCCCCHHH-----CCCHHHCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 45799899999999997769-9789---9999999885992376-----2991148999999999999997399999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999999999999999999997199899998058855898626879998198289853956799
Q 006505 206 EPTSGLDSTSALQIIDMLKVMAETRGRTVILSIHQPGFRIVKMFNSILMLANGSVLHHGTVDLLS 270 (643)
Q Consensus 206 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~~~H~~~~~~~~~~D~i~~l~~G~~~~~G~~~~~~ 270 (643)
|||++||+.++.++.+.|+++.++.|+|+|+++|+++ ++..++|++++|++|+++..|+++++.
T Consensus 153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 9653689999999999999999746998999968899-999869999999899999977999997
Done!