Query 006506
Match_columns 643
No_of_seqs 324 out of 1313
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 00:16:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02769 Probable galacturonos 100.0 7E-158 1E-162 1303.0 50.8 617 14-642 8-629 (629)
2 PLN02910 polygalacturonate 4-a 100.0 6E-131 1E-135 1080.9 38.2 473 168-642 168-656 (657)
3 PLN02829 Probable galacturonos 100.0 5E-128 1E-132 1059.4 40.1 452 190-643 177-639 (639)
4 PLN02742 Probable galacturonos 100.0 2E-119 3E-124 983.6 39.9 449 192-642 70-534 (534)
5 PLN02718 Probable galacturonos 100.0 4E-116 8E-121 967.4 40.2 434 191-642 160-602 (603)
6 PLN02523 galacturonosyltransfe 100.0 2E-101 5E-106 841.7 38.5 448 194-643 80-559 (559)
7 PLN02870 Probable galacturonos 100.0 8E-102 2E-106 843.0 31.0 398 238-642 103-531 (533)
8 PLN02867 Probable galacturonos 100.0 4E-101 9E-106 840.3 31.1 411 232-642 95-534 (535)
9 PLN02659 Probable galacturonos 100.0 3E-100 6E-105 831.2 31.3 395 241-642 107-532 (534)
10 cd06429 GT8_like_1 GT8_like_1 100.0 1.5E-53 3.2E-58 437.4 23.0 255 346-630 1-257 (257)
11 PRK15171 lipopolysaccharide 1, 100.0 2.6E-42 5.6E-47 366.2 22.0 252 343-634 23-291 (334)
12 cd06431 GT8_LARGE_C LARGE cata 100.0 3.1E-40 6.7E-45 342.8 22.3 251 348-638 5-277 (280)
13 cd00505 Glyco_transf_8 Members 100.0 1.3E-39 2.9E-44 329.6 20.4 232 346-614 1-245 (246)
14 cd04194 GT8_A4GalT_like A4GalT 100.0 3.5E-38 7.6E-43 318.3 19.0 232 346-614 1-247 (248)
15 COG1442 RfaJ Lipopolysaccharid 100.0 2.4E-37 5.3E-42 326.2 20.3 249 345-633 2-265 (325)
16 PF01501 Glyco_transf_8: Glyco 100.0 2E-34 4.3E-39 284.7 14.0 238 347-616 1-249 (250)
17 cd06430 GT8_like_2 GT8_like_2 100.0 1.2E-31 2.7E-36 280.4 21.4 244 346-632 1-276 (304)
18 cd06432 GT8_HUGT1_C_like The C 100.0 8E-32 1.7E-36 275.4 16.4 220 346-609 1-240 (248)
19 cd02537 GT8_Glycogenin Glycoge 99.9 1E-24 2.2E-29 221.3 18.2 217 347-630 2-238 (240)
20 PLN00176 galactinol synthase 99.9 2.2E-23 4.9E-28 221.1 17.6 237 345-632 22-294 (333)
21 cd06914 GT8_GNT1 GNT1 is a fun 99.7 1.9E-17 4.1E-22 172.4 9.6 134 453-616 80-241 (278)
22 KOG1879 UDP-glucose:glycoprote 99.2 9E-11 2E-15 138.4 10.3 245 341-630 1177-1444(1470)
23 COG5597 Alpha-N-acetylglucosam 97.4 7.5E-05 1.6E-09 78.8 2.1 45 454-501 157-201 (368)
24 PF03407 Nucleotid_trans: Nucl 95.1 0.14 3.1E-06 50.7 9.8 147 450-609 49-202 (212)
25 PF11051 Mannosyl_trans3: Mann 89.2 1.8 3.8E-05 45.6 8.8 32 458-489 83-114 (271)
26 PLN03182 xyloglucan 6-xylosylt 85.3 3.5 7.6E-05 46.1 8.6 79 446-538 179-259 (429)
27 PF03071 GNT-I: GNT-I family; 73.6 24 0.00053 40.0 10.5 119 343-487 92-213 (434)
28 PF04012 PspA_IM30: PspA/IM30 62.7 21 0.00045 36.1 6.7 114 187-300 21-137 (221)
29 cd02514 GT13_GLCNAC-TI GT13_GL 60.4 61 0.0013 35.6 10.1 115 346-487 2-119 (334)
30 PRK04989 psbM photosystem II r 59.2 13 0.00028 27.9 3.2 16 32-47 10-25 (35)
31 COG4575 ElaB Uncharacterized c 58.7 36 0.00078 31.4 6.7 75 222-298 11-86 (104)
32 TIGR02977 phageshock_pspA phag 58.5 32 0.00069 35.1 7.2 113 187-299 22-137 (219)
33 PF10819 DUF2564: Protein of u 56.8 38 0.00082 29.8 6.2 69 226-295 6-78 (79)
34 TIGR03038 PS_II_psbM photosyst 56.7 15 0.00033 27.1 3.2 17 31-47 9-25 (33)
35 cd02515 Glyco_transf_6 Glycosy 56.5 1.4E+02 0.0031 32.0 11.6 183 351-586 42-247 (271)
36 PF03414 Glyco_transf_6: Glyco 55.6 1.2E+02 0.0026 33.5 11.1 183 351-585 107-311 (337)
37 KOG1928 Alpha-1,4-N-acetylgluc 54.3 6.5 0.00014 43.7 1.4 32 452-487 228-259 (409)
38 CHL00080 psbM photosystem II p 45.6 25 0.00054 26.2 2.8 15 33-47 11-25 (34)
39 PRK14094 psbM photosystem II r 44.9 21 0.00046 28.5 2.6 15 33-47 11-25 (50)
40 PF05151 PsbM: Photosystem II 42.8 25 0.00055 25.7 2.5 16 32-47 10-25 (31)
41 PRK10698 phage shock protein P 42.3 82 0.0018 32.5 7.2 113 188-300 23-138 (222)
42 PRK10132 hypothetical protein; 41.1 1.2E+02 0.0027 28.0 7.4 75 222-298 15-89 (108)
43 COG4037 Predicted membrane pro 39.1 34 0.00073 32.9 3.4 44 34-79 23-69 (163)
44 PLN03181 glycosyltransferase; 38.1 34 0.00074 38.7 3.8 19 463-481 196-214 (453)
45 COG1842 PspA Phage shock prote 38.0 85 0.0018 32.6 6.5 110 188-300 23-138 (225)
46 PF05637 Glyco_transf_34: gala 35.5 29 0.00062 36.0 2.7 22 464-485 75-96 (239)
47 PRK10404 hypothetical protein; 35.3 1.6E+02 0.0034 27.0 7.1 78 219-298 5-83 (101)
48 PF15176 LRR19-TM: Leucine-ric 34.1 44 0.00094 30.8 3.2 37 18-54 13-50 (102)
49 PF04488 Gly_transf_sug: Glyco 32.4 23 0.00049 31.5 1.2 36 447-486 61-97 (103)
50 PF10153 DUF2361: Uncharacteri 32.3 63 0.0014 30.3 4.1 40 227-270 1-44 (114)
51 KOG0994 Extracellular matrix g 30.5 3.5E+02 0.0075 34.8 10.6 79 221-300 1469-1560(1758)
52 PRK10807 paraquat-inducible pr 29.9 1.6E+02 0.0034 34.5 7.7 49 248-300 474-522 (547)
53 PF07426 Dynactin_p22: Dynacti 28.2 1.9E+02 0.0042 28.9 7.0 60 225-291 7-67 (174)
54 PF06785 UPF0242: Uncharacteri 27.6 3.4E+02 0.0075 30.1 9.1 107 197-306 107-225 (401)
55 PF11932 DUF3450: Protein of u 27.2 83 0.0018 32.7 4.4 130 197-329 57-200 (251)
56 PF13706 PepSY_TM_3: PepSY-ass 27.0 68 0.0015 23.9 2.7 23 21-43 9-31 (37)
57 PF03314 DUF273: Protein of un 26.9 46 0.00099 34.5 2.4 24 458-481 34-57 (222)
58 PF05957 DUF883: Bacterial pro 25.9 1.9E+02 0.0042 25.4 5.9 75 223-299 2-77 (94)
59 PLN02867 Probable galacturonos 25.4 1.2E+02 0.0026 35.4 5.6 73 223-297 93-167 (535)
60 KOG2391 Vacuolar sorting prote 21.7 1.6E+02 0.0035 32.6 5.3 48 256-303 227-274 (365)
61 PF15290 Syntaphilin: Golgi-lo 21.6 1.1E+02 0.0025 32.9 4.1 20 270-289 151-170 (305)
62 KOG2189 Vacuolar H+-ATPase V0 21.3 1.1E+02 0.0023 37.3 4.2 46 196-243 236-281 (829)
63 PF05397 Med15_fungi: Mediator 21.2 88 0.0019 29.2 2.9 51 188-239 32-82 (115)
64 PRK15384 type III secretion sy 20.7 44 0.00095 35.4 0.9 85 219-304 70-159 (336)
65 PF08999 SP_C-Propep: Surfacta 20.6 1.3E+02 0.0027 26.9 3.5 25 25-49 36-60 (93)
66 PLN00090 photosystem II reacti 20.6 1.1E+02 0.0024 28.1 3.2 19 29-47 77-95 (113)
67 PRK15383 type III secretion sy 20.4 47 0.001 35.2 1.0 87 217-304 69-160 (335)
68 PF10146 zf-C4H2: Zinc finger- 20.4 1.9E+02 0.0042 30.1 5.5 77 214-293 23-99 (230)
69 PRK15382 non-LEE encoded effec 20.3 48 0.001 35.1 1.0 88 217-305 63-155 (326)
70 PRK10998 malG maltose transpor 20.2 82 0.0018 33.1 2.8 33 15-47 4-37 (296)
71 PLN02939 transferase, transfer 20.2 3.2E+02 0.007 34.4 8.1 62 231-293 301-369 (977)
72 KOG1950 Glycosyl transferase, 20.0 56 0.0012 35.9 1.6 28 463-490 122-149 (369)
No 1
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=6.6e-158 Score=1302.95 Aligned_cols=617 Identities=62% Similarity=0.990 Sum_probs=537.0
Q ss_pred cccCccccchhhhHHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCCCCCCCCCccccchhhhhhcc--cccCcccccccc
Q 006506 14 LVTTGKRRWRSLVIGVLFLVILSMLVPLAFLLGL-HNGFHSPNPNPNGYVPVHKTSIVSDLKIYDK--YENSETFNHAEN 90 (643)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 90 (643)
.+.++||||||+++|||+|||+||||||+||||| |+||||+ |.+.++..+ +.+ |++ ......+++.++
T Consensus 8 ~~~~~~~r~~~~~~~v~~lv~~s~l~pl~~l~~~~~~~~~~~-----~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~ 78 (629)
T PLN02769 8 LTPPGKRRWRGLVIAVLALVLCSMLVPLAFLLGLHHNGFHST-----GRVAVQPVS---SPE-FSHVGSARENGTKKTQN 78 (629)
T ss_pred CCCCCcccccchHHHHHHHHHHHHHHHHHHHhccccccCCcc-----ccccccccc---ccc-cccccccccCCCccccc
Confidence 4458999999999999999999999999999999 9999998 455444333 211 111 112244555555
Q ss_pred ccchhhHHHHhhcCCCCccccccCCCCCCCcccCCCCccCcCCCCCcCCCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 006506 91 YRSTRINDLVKKLAPNISKDVRSNFPDGAKTETSDMSATDTSHHSKVTPVSPPAVPQSLPNTSNSKIAGTVADSGRGGVD 170 (643)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (643)
........+.+....+-.+....+.+.+......- +.. +.++.++.|.+.+. +.+...+.+.......+.+..+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e 155 (629)
T PLN02769 79 QVSEGVDEILKESGLTSSKPSDIVISSRSKLKKVF-PDP-KLNPLPVKPHSVPV-PSSDTKNKSTAIDKENKGQKADEDE 155 (629)
T ss_pred cccccccccccccCcccCCCcccccCCcccCCccC-CCc-ccCCCCCCCCCCCC-ccccccccccccccccccccccccc
Confidence 55555555554444444433333333222211100 001 11222222222222 2222234444456666778889999
Q ss_pred cccccceeccceeeeeccccccchhHHHHHhHHHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCCCCCc
Q 006506 171 ENENCELKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPP 250 (643)
Q Consensus 171 ~~~~~~~~~g~y~~w~~~~~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~e~~~~l~~~~~d~~l~~ 250 (643)
++|+|||+||||||||+||+++|+|++||+|||||||||||||+|||+++|++|+|||++||||+||+||||++|+|||+
T Consensus 156 ~~~~c~~~~g~y~~w~~e~~~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~dlp~ 235 (629)
T PLN02769 156 NEKSCELEFGSYCLWSEEHKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDADLPP 235 (629)
T ss_pred ccccceeeccceeeecccccccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhccccccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCccccccccccchhhhcCCcc
Q 006506 251 GIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSV 330 (643)
Q Consensus 251 ~~~~~~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~l~~laa~~~Pk~lhcL~~rlt~ey~~~~~~ 330 (643)
++.++|++|+++|++||+++|||.+|++|||||+++||||+++|+||++||+||||+|+|||||||+||||+|||.+++.
T Consensus 236 ~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~~ 315 (629)
T PLN02769 236 FIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSSL 315 (629)
T ss_pred hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccc
Q 006506 331 VMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQ 410 (643)
Q Consensus 331 ~~~~p~~~~l~D~~~iHIv~~sDNvLaasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~ 410 (643)
++++|++++++||+++|||+||||+||++||||||+.|+++|++++||||||..|+.+|++||.++++++|+|+|+++++
T Consensus 316 ~~~~~~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e~ 395 (629)
T PLN02769 316 DMEDSNSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIED 395 (629)
T ss_pred hccCCchhhccCCccceEEEEeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHhhccccchhhccccCCCCCccc-ccccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHccc
Q 006506 411 LNLESHDKAILIHMFLPVEYRVSLLSVDGPSIHS-KMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDIN 489 (643)
Q Consensus 411 f~~~~~~~~~l~~l~~~~efr~~f~~~~~p~~~~-r~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iD 489 (643)
|+|.+.++..+++++.+++|+++|++...|..++ +++|+|+++|+|||||++||+++||||||+||||++||++||++|
T Consensus 396 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~iD 475 (629)
T PLN02769 396 LILKDLDKFALKQLSLPEEFRVSFRSVDNPSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLD 475 (629)
T ss_pred eeecccchHHHHhhccchhhhhhhccCCCCchhccCcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcCC
Confidence 9999999999999999999999988766554444 699999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeecccccchhhhhhhhccCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHccC-Cccccccccccchh
Q 006506 490 MGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM-GEESKEAVALRGSL 568 (643)
Q Consensus 490 L~gkviaAVeDc~~~~~~~~~yl~~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~~-DQDlLN~GtLP~~n 568 (643)
|+|+++|||+||..+++.+.+|++..+|+++.||||+|||||||++||+++++++++.|++++.. |+..|..++||++|
T Consensus 476 L~gkviAAVedc~~rl~~~~~yl~~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~ln 555 (629)
T PLN02769 476 MGGKVNGAVQFCGVRLGQLKNYLGDTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPASL 555 (629)
T ss_pred CCCCeEEEehhhhhhhhhhhhhhcccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhcccccccccCcCHHH
Confidence 99999999999988777778888888899999999999999999999999999999999988765 67889999999999
Q ss_pred hhccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCccchHHHHHHHHhhCchhhccccCC
Q 006506 569 LTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 642 (643)
Q Consensus 569 l~F~g~i~~Ld~~WN~~~lg~d~~i~~~~i~~p~IIHY~G~~KPW~~~~~~~y~~lW~kY~~~s~~fl~~Cni~ 642 (643)
++|+|++++||.+||++++||++.+..+.+++|+||||+|++|||++.+.++|+++||+|++++++|||+|||+
T Consensus 556 lvF~g~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~~KPW~e~~i~~yr~~W~kYl~~~~~fl~~Cni~ 629 (629)
T PLN02769 556 LTFQDLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNMKPWLELGIPKYKKYWKRFLNRDDRFMDECNVN 629 (629)
T ss_pred HHhcCeEEECCHHHccccccccccccccccCCcEEEEECCCCCCccCCCCChHHHHHHHHhccCChHHhhCCCC
Confidence 99999999999999999999998887788899999999999999999999999999999999999999999996
No 2
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=5.9e-131 Score=1080.90 Aligned_cols=473 Identities=36% Similarity=0.679 Sum_probs=438.2
Q ss_pred CCCcccccc-eeccceeeeeccccccchhHHHHHhHHHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCC
Q 006506 168 GVDENENCE-LKFGSYCLWRREHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDV 246 (643)
Q Consensus 168 ~~~~~~~~~-~~~g~y~~w~~~~~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~e~~~~l~~~~~d~ 246 (643)
+-|.+|+|. -++|||||||+||+++|+|++||+||||||||||| |+|||+++|++|+|||++||||+||+||||++|+
T Consensus 168 ~~~~sk~~d~~~~g~y~~w~~e~~~~~~d~~vk~lkDQl~~AkaY-~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~ 246 (657)
T PLN02910 168 AIERSKSLDTSVKGKYSIWRRDYESPNSDSILKLMRDQIIMAKAY-ANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDA 246 (657)
T ss_pred HhhhhhccCcccccceeeecccccccCcHHHHHHHHHHHHHHHHH-HHHhccCCcHHHHHHHHHHHHHHHHHHhhccccc
Confidence 557889998 56999999999999999999999999999999999 7999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCccccccccccchhhhc
Q 006506 247 DLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFK 326 (643)
Q Consensus 247 ~l~~~~~~~~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~l~~laa~~~Pk~lhcL~~rlt~ey~~ 326 (643)
|||+++.++|++|+++|++||++++||.+|++|||||++++||++++|++|++|++||||+|+|||||||+||||+|||.
T Consensus 247 dlp~~~~~k~~~M~~~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~ 326 (657)
T PLN02910 247 ELHSSALDQAKAMGHVLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFL 326 (657)
T ss_pred ccCchHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEE
Q 006506 327 SPSVVMELSQADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVL 406 (643)
Q Consensus 327 ~~~~~~~~p~~~~l~D~~~iHIv~~sDNvLaasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vi 406 (643)
+++.++++|++++|+||+++|||+|||||||++|||||++.|+++|++++||||||.+|+.+|++||.+|++++|+|||.
T Consensus 327 ~~~~~~~~p~~~~l~dp~l~Hy~ifSDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~ 406 (657)
T PLN02910 327 LGFQNKDYVNKKKLEDPSLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVE 406 (657)
T ss_pred CchhhccCCChhhccCCcceeEEEEecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eccccccccchh-HHHHhhccccchhhccccC-----CC-C-Ccccc-cccchHhHHHHhhhhhhhccCCeEEEEeccee
Q 006506 407 NIEQLNLESHDK-AILIHMFLPVEYRVSLLSV-----DG-P-SIHSK-MQYISVFSHLHYLLPEIFQSLTKVVVLDDDVV 477 (643)
Q Consensus 407 ni~~f~~~~~~~-~~l~~l~~~~efr~~f~~~-----~~-p-~~~~r-~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvV 477 (643)
++++|+|.+.+. .+++|+........+|++. +. . ..++| |+|+|+++|+|||||++||+++||||||+|||
T Consensus 407 nie~f~wln~~~~pvl~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~KVLYLD~DVV 486 (657)
T PLN02910 407 NIDDFKWLNSSYCSVLRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIV 486 (657)
T ss_pred ehhhcccccccccHHHHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCeEEEEeCCEE
Confidence 999999998764 6788865433233334320 00 1 11445 99999999999999999999999999999999
Q ss_pred EeCCchHHHcccCCCCeeeeecccccchhhhhhhhc------cCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHH
Q 006506 478 VQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVRE 551 (643)
Q Consensus 478 V~~DLseLw~iDL~gkviaAVeDc~~~~~~~~~yl~------~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~ 551 (643)
|++||++||++||+|+++|||+||...++++..|++ ...|+++.||||+|||||||++||++++|+.+..| ++
T Consensus 487 V~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe~ye~w-~e 565 (657)
T PLN02910 487 VQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITGIYHYW-QD 565 (657)
T ss_pred ecCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHHHHHHH-HH
Confidence 999999999999999999999999876656666554 23678899999999999999999999999977654 55
Q ss_pred ccCCccccccccccchhhhccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCccchHHHHHHHHhh
Q 006506 552 VSMGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQ 631 (643)
Q Consensus 552 ~~~DQDlLN~GtLP~~nl~F~g~i~~Ld~~WN~~~lg~d~~i~~~~i~~p~IIHY~G~~KPW~~~~~~~y~~lW~kY~~~ 631 (643)
.+++..+|.+|+|||++++|+|++++||++||++|+||++.+..+.+++|+||||+|++|||.+.+.++|+++|.+|+++
T Consensus 566 ln~~~~L~dqgsLPpgLLvF~g~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~KPWl~l~i~~Yr~~W~kYl~~ 645 (657)
T PLN02910 566 LNEDRTLWKLGSLPPGLITFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYKPWLDLAIAKYKPYWSRYVQY 645 (657)
T ss_pred hcccccccccCCCChHHHHHhCceeecCchheecCCCCCcccccccccCcEEEEeCCCCCcccccCcccchHHHHHHccC
Confidence 66788999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred CchhhccccCC
Q 006506 632 EDQLLSECNVH 642 (643)
Q Consensus 632 s~~fl~~Cni~ 642 (643)
+++|||+|||+
T Consensus 646 d~~fl~~Cni~ 656 (657)
T PLN02910 646 DNPYLQLCNIS 656 (657)
T ss_pred CChHHHhCCCC
Confidence 99999999997
No 3
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=5e-128 Score=1059.35 Aligned_cols=452 Identities=39% Similarity=0.738 Sum_probs=425.1
Q ss_pred cccchhHHHHHhHHHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcC
Q 006506 190 REEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSV 269 (643)
Q Consensus 190 ~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~e~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~ 269 (643)
+++|+|++||+|||||||||||+ +|||+++|++|+||||+||||+||+||||++|+|||+++.++|++|+++|++||++
T Consensus 177 ~~~~~d~~v~~lkDql~~AkaY~-~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~~ 255 (639)
T PLN02829 177 QTVMPDARVRQLRDQLIKAKVYL-SLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQM 255 (639)
T ss_pred cccCchHHHHHHHHHHHHHHHHH-HHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999999995 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCccccccccccchhhhcCCccccccccccCCCCCCceEEE
Q 006506 270 PVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYV 349 (643)
Q Consensus 270 ~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~l~~laa~~~Pk~lhcL~~rlt~ey~~~~~~~~~~p~~~~l~D~~~iHIv 349 (643)
++||.++++|||||++++||++++|++|++|++||||+|+|||||||+||||+|||.+++.++++|++++|+||+++|||
T Consensus 256 ~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy~ 335 (639)
T PLN02829 256 QDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLEDPQLYHYA 335 (639)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhccCCChhhccCCccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCchhhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccch-hHHHHhhcccc
Q 006506 350 IFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHD-KAILIHMFLPV 428 (643)
Q Consensus 350 ~~sDNvLaasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~-~~~l~~l~~~~ 428 (643)
+|||||||++|||||++.|+++|++++||||||.+|+.+|++||.+|++++|+|+|+++++|+|.+.+ .++++|+..++
T Consensus 336 ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl~ql~~~~ 415 (639)
T PLN02829 336 LFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQLGSQS 415 (639)
T ss_pred EEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhcccccccccHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 57899999988
Q ss_pred chhhccccCCCC---Ccccc-cccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeecccccc
Q 006506 429 EYRVSLLSVDGP---SIHSK-MQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS 504 (643)
Q Consensus 429 efr~~f~~~~~p---~~~~r-~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~~~ 504 (643)
.++++|++.... ..++| |+|+|+++|+|||||++||+++||||||+||||++||++||++||+|+++|||+||...
T Consensus 416 ~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~~ 495 (639)
T PLN02829 416 MIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGES 495 (639)
T ss_pred hhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchhh
Confidence 888888743211 11344 99999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhhhhhhc------cCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHccCCccccccccccchhhhccCceEEe
Q 006506 505 LGQLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYAL 578 (643)
Q Consensus 505 ~~~~~~yl~------~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~~DQDlLN~GtLP~~nl~F~g~i~~L 578 (643)
++++..|++ ...|+++.||||+|||||||++||++++|++|+.|++.+ .+..+|.+|+|||++++|+|++++|
T Consensus 496 f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n-~~r~L~dlgaLPp~Ll~F~g~i~~L 574 (639)
T PLN02829 496 FHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLN-HDRQLWKLGTLPPGLITFWKRTYPL 574 (639)
T ss_pred hhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHc-cCCccccccCCChHHHHhcCceEec
Confidence 555555542 236778999999999999999999999999999998654 4567899999999999999999999
Q ss_pred CCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCccchHHHHHHHHhhCchhhccccCCC
Q 006506 579 DGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVHP 643 (643)
Q Consensus 579 d~~WN~~~lg~d~~i~~~~i~~p~IIHY~G~~KPW~~~~~~~y~~lW~kY~~~s~~fl~~Cni~~ 643 (643)
|++||++|+||++.+..+.+++|+||||+|++|||.+.++++|+++|.+|++++++|||+|||||
T Consensus 575 D~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl~~Cni~p 639 (639)
T PLN02829 575 DRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLRECNINP 639 (639)
T ss_pred ChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHHHhCCCCC
Confidence 99999999999987777889999999999999999999999999999999999999999999998
No 4
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=1.5e-119 Score=983.60 Aligned_cols=449 Identities=36% Similarity=0.606 Sum_probs=417.1
Q ss_pred cchhHHHHHhHHHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCCCC--CccHHHHHHHHHHHHHHhhcC
Q 006506 192 EMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDL--PPGIEKKIQRMEAAITKAKSV 269 (643)
Q Consensus 192 ~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~e~~~~l~~~~~d~~l--~~~~~~~~~~m~~~~~~ak~~ 269 (643)
-.+|++||+|||||||||||+ +|||+++|++|+|||++||||+||+||+|++|+++ |+++.++|++|+++|++||++
T Consensus 70 ~~~~~~~~~l~dql~~Ak~y~-~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~ 148 (534)
T PLN02742 70 LSATSFSRQLADQITLAKAYV-VIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDL 148 (534)
T ss_pred cChHHHHHHHHHHHHHHHHHH-HHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhc
Confidence 357999999999999999998 99999999999999999999999999999999997 489999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCccccccccccchhhhcCCccccc---cccccCCCCCCce
Q 006506 270 PVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVME---LSQADRFSDPSLH 346 (643)
Q Consensus 270 ~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~l~~laa~~~Pk~lhcL~~rlt~ey~~~~~~~~~---~p~~~~l~D~~~i 346 (643)
+|||.++++|||||++++||++++|++|++|++||||+|+|||||||+||||+|||.+++.+++ .|+.++|+||+++
T Consensus 149 ~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l~ 228 (534)
T PLN02742 149 HYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDNNLY 228 (534)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhccccccccccccCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999998643 5567899999999
Q ss_pred EEEEEeCCchhhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccch-hHHHHhhc
Q 006506 347 HYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHD-KAILIHMF 425 (643)
Q Consensus 347 HIv~~sDNvLaasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~-~~~l~~l~ 425 (643)
|||+||||+||++||||||+.|+++|++++||||||..++.+|++||..+++++++|+|+++++|.|.+.+ ..+++|+.
T Consensus 229 Hy~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql~ 308 (534)
T PLN02742 229 HFCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQ 308 (534)
T ss_pred eEEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998764 57889998
Q ss_pred cccchhhccccCC-C-CC-cccc-cccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeeccc
Q 006506 426 LPVEYRVSLLSVD-G-PS-IHSK-MQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSC 501 (643)
Q Consensus 426 ~~~efr~~f~~~~-~-p~-~~~r-~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc 501 (643)
.++.++++|++.. . +. .++| |+|+|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+||
T Consensus 309 ~~~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC 388 (534)
T PLN02742 309 DSDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETC 388 (534)
T ss_pred hhhhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCch
Confidence 7766666776433 1 11 1344 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhc------cCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHccCCccccccccccchhhhccCce
Q 006506 502 SVSLGQLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLV 575 (643)
Q Consensus 502 ~~~~~~~~~yl~------~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~~DQDlLN~GtLP~~nl~F~g~i 575 (643)
+..++++..|++ ..+|+++.||||+|||||||++||++++|+.++.|+ +.+.+..+|..|+|||++++|+|++
T Consensus 389 ~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~-e~n~~~~l~d~gaLpp~LLaF~g~~ 467 (534)
T PLN02742 389 LETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQ-EQNVDRTLWKLGTLPPGLLTFYGLT 467 (534)
T ss_pred hhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHH-HhccccccccccccchHHHHHcCcc
Confidence 877777777765 357889999999999999999999999999887665 5566789999999999999999999
Q ss_pred EEeCCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCccchHHHHHHHHhhCchhhccccCC
Q 006506 576 YALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 642 (643)
Q Consensus 576 ~~Ld~~WN~~~lg~d~~i~~~~i~~p~IIHY~G~~KPW~~~~~~~y~~lW~kY~~~s~~fl~~Cni~ 642 (643)
++||++||+.|+||+..++.+.+++|+||||+|++|||.+.+.++|+++|++|++++++|||+||||
T Consensus 468 ~~LD~rWNv~gLG~~~~v~~~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kYl~~s~~fl~~Cni~ 534 (534)
T PLN02742 468 EPLDRRWHVLGLGYDTNIDPRLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHPYLQQCNFH 534 (534)
T ss_pred eecChhheecccccccccchhhccCCeEEEECCCCCcccccCCcccchHHHHHHccCCHHHHhCCCC
Confidence 9999999999999988887788999999999999999999999999999999999999999999996
No 5
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=3.6e-116 Score=967.43 Aligned_cols=434 Identities=39% Similarity=0.720 Sum_probs=398.9
Q ss_pred ccchhHHHHHhHHHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCC
Q 006506 191 EEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVP 270 (643)
Q Consensus 191 ~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~e~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~~ 270 (643)
+.|+|++||+|||||||||||+ +|||+++|++|+||||+||||+||+||+|+.|+|||+++.++|++|+++|++||+++
T Consensus 160 ~~~~d~~v~~~~dql~~ak~y~-~~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~ 238 (603)
T PLN02718 160 RRATDEKVKEIRDKIIQAKAYL-NLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVF 238 (603)
T ss_pred ccCcHHHHHHHHHHHHHHHHHH-HHhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCccccccccccchhhhcCCccccccccccCCCCCCceEEEE
Q 006506 271 VDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVMELSQADRFSDPSLHHYVI 350 (643)
Q Consensus 271 ~~~~~~~~klr~~~~~~E~~~~~~~~q~~~l~~laa~~~Pk~lhcL~~rlt~ey~~~~~~~~~~p~~~~l~D~~~iHIv~ 350 (643)
|||.+|++|||||++++||++++|++|++|++||||+|+|||||||+||||+|||.+++.++++|++++|+||+.+|||+
T Consensus 239 ~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~~~~~~l~d~~~~Hia~ 318 (603)
T PLN02718 239 PNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDLYHYVV 318 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhccCCChhhccCCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHHhhccccch
Q 006506 351 FSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVEY 430 (643)
Q Consensus 351 ~sDNvLaasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~~~~l~~l~~~~ef 430 (643)
++|||++++|+|+|++.|+.+|++++||||||++++++|+.||..++..+++|+|+++++|.|.... +
T Consensus 319 ~sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~------------~ 386 (603)
T PLN02718 319 FSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPAD------------Y 386 (603)
T ss_pred EcCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhcccccc------------c
Confidence 9999999999999999999888899999999999999999999988877999999999988764321 1
Q ss_pred hhccccCCCCCcccccccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeecccccc---hhh
Q 006506 431 RVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS---LGQ 507 (643)
Q Consensus 431 r~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~~~---~~~ 507 (643)
...++... ..+++|+|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+||... +..
T Consensus 387 ~~~lk~l~----s~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~ 462 (603)
T PLN02718 387 NSLLMKQN----SHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRS 462 (603)
T ss_pred hhhhhhcc----ccccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhh
Confidence 11111111 12468999999999999999999999999999999999999999999999999999999752 233
Q ss_pred hhhhhc------cCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHccCCccccccccccchhhhccCceEEeCCc
Q 006506 508 LKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEAVALRGSLLTFQDLVYALDGV 581 (643)
Q Consensus 508 ~~~yl~------~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~~DQDlLN~GtLP~~nl~F~g~i~~Ld~~ 581 (643)
+..|++ ..+|+++.||||+|||||||++||++++++++++|++++. +..+|..|+|||+|++|+|++++||++
T Consensus 463 ~~~~lnfs~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~-~~~l~dqdaLpp~LlvF~gri~~LD~r 541 (603)
T PLN02718 463 MDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGV-KRPLWKAGSLPIGWLTFYNQTVALDKR 541 (603)
T ss_pred hhhhhhccchhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhcc-CccccCcccccHHHHHhcCceeecChH
Confidence 333432 2367889999999999999999999999999999998754 347788899999999999999999999
Q ss_pred ccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCccchHHHHHHHHhhCchhhccccCC
Q 006506 582 WALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 642 (643)
Q Consensus 582 WN~~~lg~d~~i~~~~i~~p~IIHY~G~~KPW~~~~~~~y~~lW~kY~~~s~~fl~~Cni~ 642 (643)
||++++||+..+..+.+++|+||||+|++|||++.+++.|+++|.+|++++++|||+|||+
T Consensus 542 WNv~gLG~~~~i~~~~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v~~~~~~l~~Cn~~ 602 (603)
T PLN02718 542 WHVLGLGHESGVGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHHPYLQQCNIH 602 (603)
T ss_pred HhccCccccccccccccCCCEEEEECCCCCccccCChhhHHHHHHhhcCCCChHHHhcCCC
Confidence 9999999988777778899999999999999999999999999999999999999999997
No 6
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=2.3e-101 Score=841.70 Aligned_cols=448 Identities=33% Similarity=0.571 Sum_probs=386.1
Q ss_pred hhHHHHHhHHHHHHHHhhhhhhcCCCCC-hHHH---HHHHHHHHHHHH-----H-hhc--ccCC----CCCCccHHHHHH
Q 006506 194 KDTMVKKLKDQLFVARAYYPSIAKLPSQ-DKLT---RALRQNIQEVER-----V-LSE--SATD----VDLPPGIEKKIQ 257 (643)
Q Consensus 194 ~d~~~~~~~dq~~~a~~y~~~~a~~~~~-~~~~---~el~~~~~e~~~-----~-l~~--~~~d----~~l~~~~~~~~~ 257 (643)
.|.+.||..|...++.||.+..+|++.. ++++ .||..|+.++.. . +++ .+.| .+||+++.+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 159 (559)
T PLN02523 80 LDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQFEKEVKERVK 159 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhcCccccccccccCCcCchHHHhhcchhHHHHHH
Confidence 3899999999999999999888888855 4444 588888887652 1 121 2223 348999999999
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCccccccccccchhhhcCCccccc--cc
Q 006506 258 RMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPSVVME--LS 335 (643)
Q Consensus 258 ~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~l~~laa~~~Pk~lhcL~~rlt~ey~~~~~~~~~--~p 335 (643)
.|+++|++||+ .|||..+++|||+|++++||++++++||++|++||||+|+|||||||+||||+|||.+++.+++ .|
T Consensus 160 ~~~~~~~~a~~-~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~ 238 (559)
T PLN02523 160 VARQMIAESKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKDEGKP 238 (559)
T ss_pred HHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhccCCC
Confidence 99999999998 7788899999999999999999999999999999999999999999999999999999887544 45
Q ss_pred cccCCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEcccccccc
Q 006506 336 QADRFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLES 415 (643)
Q Consensus 336 ~~~~l~D~~~iHIv~~sDNvLaasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~ 415 (643)
++++++||+++|||+||||+++++|+|+||+.|+++|++++||||||++|+.+|++||.++++.+++|+|++|++|+|.+
T Consensus 239 ~~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln 318 (559)
T PLN02523 239 PPPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLN 318 (559)
T ss_pred cchhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred chh-HHHHhhccccchhhccccC----C-CC-Ccccc-cccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHc
Q 006506 416 HDK-AILIHMFLPVEYRVSLLSV----D-GP-SIHSK-MQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWD 487 (643)
Q Consensus 416 ~~~-~~l~~l~~~~efr~~f~~~----~-~p-~~~~r-~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~ 487 (643)
... ++++++...+-.+.+|++. . .. ..+++ |+|+|+++|+|||||++||+++||||||+||||++||++||+
T Consensus 319 ~~~~pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~ 398 (559)
T PLN02523 319 SSYVPVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWK 398 (559)
T ss_pred cccchHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHh
Confidence 432 3344443222122233311 0 00 01233 799999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeeecccccchhhhhhhhc------cCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHccCCcccccc
Q 006506 488 INMGGKVNGAVQSCSVSLGQLKSYLG------ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSMGEESKEA 561 (643)
Q Consensus 488 iDL~gkviaAVeDc~~~~~~~~~yl~------~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~~DQDlLN~ 561 (643)
+||+|+++|||+||...+.++..+++ ...|+++.||||+|||||||++||++++|++++. +++.++++.+|+.
T Consensus 399 iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~-w~~ln~~~~l~Dq 477 (559)
T PLN02523 399 IDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHY-WQNLNENRTLWKL 477 (559)
T ss_pred CcCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHH-HHHhccccccccc
Confidence 99999999999999653334444432 2357889999999999999999999999999964 4566667889999
Q ss_pred ccccchhhhccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCccchHHHHHHHHhhCchhhccccC
Q 006506 562 VALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNV 641 (643)
Q Consensus 562 GtLP~~nl~F~g~i~~Ld~~WN~~~lg~d~~i~~~~i~~p~IIHY~G~~KPW~~~~~~~y~~lW~kY~~~s~~fl~~Cni 641 (643)
|+|||+|++|+|+|++||++||++++||++.+..+.+++|+||||+|++|||++.+.++|+++|++|++++++|||+|||
T Consensus 478 daLpp~LivF~gri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~~KPWle~~i~~yr~~W~kYl~~~~~fl~~Cn~ 557 (559)
T PLN02523 478 GTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNMKPWLDIAMNQFKPLWTKYVDYDMEFVQACNF 557 (559)
T ss_pred cccchHHHHhcCceEecCchhhccCCccCCCccccccCCCEEEEECCCCCccccCCCCcchHHHHHHHccCCHHHHhCCC
Confidence 99999999999999999999999999998877778889999999999999999999999999999999999999999999
Q ss_pred CC
Q 006506 642 HP 643 (643)
Q Consensus 642 ~~ 643 (643)
+|
T Consensus 558 ~~ 559 (559)
T PLN02523 558 GL 559 (559)
T ss_pred CC
Confidence 87
No 7
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=8.3e-102 Score=842.99 Aligned_cols=398 Identities=34% Similarity=0.602 Sum_probs=360.3
Q ss_pred HhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCccccccc
Q 006506 238 VLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLS 317 (643)
Q Consensus 238 ~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~l~~laa~~~Pk~lhcL~ 317 (643)
.-+|++.|+|||+++.++++ +||+.++||.++++|||||++++||+++++++|++|++||||+|+|||||||+
T Consensus 103 ~~~~~~~d~~lp~s~~~~~~-------~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~laa~t~PK~lHCL~ 175 (533)
T PLN02870 103 NTEEIPDGLKLPDSFSQLVS-------DMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELMNKHFAASSIPKGIHCLS 175 (533)
T ss_pred ccccccccccCChhHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Confidence 34589999999999999887 67779999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCcccccccccc---CCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHH
Q 006506 318 MRLTVEYFKSPSVVMELSQAD---RFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFF 394 (643)
Q Consensus 318 ~rlt~ey~~~~~~~~~~p~~~---~l~D~~~iHIv~~sDNvLaasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~ 394 (643)
||||+|||.++..++++|++| +|+||+++|||+||||+||+||||||++.|+++|++++||||||++|+.+|++||.
T Consensus 176 mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VFHvvTD~~n~~aM~~WF~ 255 (533)
T PLN02870 176 LRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIVFHVITDKKTYAGMHSWFA 255 (533)
T ss_pred hhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHh
Confidence 999999999999999998776 89999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCceEEEEEccccccccchh-HHHHhhccccchhhccccCCCC---------------CcccccccchHhHHHHhh
Q 006506 395 RNTFKEATVQVLNIEQLNLESHDK-AILIHMFLPVEYRVSLLSVDGP---------------SIHSKMQYISVFSHLHYL 458 (643)
Q Consensus 395 ~n~~~~a~I~vini~~f~~~~~~~-~~l~~l~~~~efr~~f~~~~~p---------------~~~~r~~ylS~l~y~Rf~ 458 (643)
+|++++|+|||+++++|+|.+... ++++|+....+++.+|.+...+ +...+|+|+|+++|+|||
T Consensus 256 ~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~lny~Rl~ 335 (533)
T PLN02870 256 LNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQARSPKYISLLNHLRIY 335 (533)
T ss_pred hCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccchhhhcccccCCccccCHHHHHHHH
Confidence 999999999999999999988753 6788877666666655432211 112359999999999999
Q ss_pred hhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeecccccc-----hhhhhhhhc------cCCCCCCCCccccc
Q 006506 459 LPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS-----LGQLKSYLG------ENSYDKNSCAWMSG 527 (643)
Q Consensus 459 IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~~~-----~~~~~~yl~------~~~~~~~~cyfNSG 527 (643)
||++||+++||||||+||||++||++||++||+|+++|||+||... .++++.|++ ..+++++.||||||
T Consensus 336 LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd~~~cyfNSG 415 (533)
T PLN02870 336 LPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLDPEECAWAYG 415 (533)
T ss_pred HHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccCcccceeecc
Confidence 9999999999999999999999999999999999999999999642 234556765 45789999999999
Q ss_pred eEEechHHHHHhhHHHHHHHHHHHcc-CCccccccccccchhhhccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEc
Q 006506 528 LNIVDLARWRELDLTKTYQRLVREVS-MGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHY 606 (643)
Q Consensus 528 VlLINL~kWRk~nitek~~~~l~~~~-~DQDlLN~GtLP~~nl~F~g~i~~Ld~~WN~~~lg~d~~i~~~~i~~p~IIHY 606 (643)
||||||++||++++++++++|++++. ++...|..|+||++|++|+|++++||.+||++++||+.....+.+++|+||||
T Consensus 416 VlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQdaLp~~livf~g~v~~LD~rWN~~gLgy~~~~~~~~i~~aaIIHY 495 (533)
T PLN02870 416 MNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHMLGLGYQSKTNIESVKKAAVIHY 495 (533)
T ss_pred chhccHHHHHHcChHHHHHHHHHhhhhcCceecccccccHhHHHhcCceEECChHHhcCCCCCcccccccccCCcEEEEE
Confidence 99999999999999999999998764 34566777788999999999999999999999999987666678899999999
Q ss_pred cCCCCCcccCCccchHHHHHHHHhhCchhhccccCC
Q 006506 607 NGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 642 (643)
Q Consensus 607 ~G~~KPW~~~~~~~y~~lW~kY~~~s~~fl~~Cni~ 642 (643)
+|++|||++.+.++|+++|.+|++++++||++|||+
T Consensus 496 ~G~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 531 (533)
T PLN02870 496 NGQSKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHIL 531 (533)
T ss_pred CCCCCCccccCccchhHHHHHHHccCchHhhhcCCC
Confidence 999999999999999999999999999999999997
No 8
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=4.3e-101 Score=840.29 Aligned_cols=411 Identities=32% Similarity=0.564 Sum_probs=363.9
Q ss_pred HHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCc
Q 006506 232 IQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPK 311 (643)
Q Consensus 232 ~~e~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~l~~laa~~~Pk 311 (643)
.+|++|+|+||+.|+++|+.+.++.+.|+++++++|+.++||.++++|||||++++||+++++++|++|++||||+|+||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~PK 174 (535)
T PLN02867 95 REELTRALVEAKEQDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIPK 174 (535)
T ss_pred HHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhcCCcccccccccc---CCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHH
Q 006506 312 SLHCLSMRLTVEYFKSPSVVMELSQAD---RFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFA 388 (643)
Q Consensus 312 ~lhcL~~rlt~ey~~~~~~~~~~p~~~---~l~D~~~iHIv~~sDNvLaasVvInSil~N~~~p~~i~FHIItD~in~~~ 388 (643)
|||||+||||+|||.++++++++|+++ +++||+++|||+||||+||++|||||++.|+++|++++||||||.+|+.+
T Consensus 175 ~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ny~a 254 (535)
T PLN02867 175 SLHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTYTP 254 (535)
T ss_pred CccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHH
Confidence 999999999999999999999998776 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCceEEEEEccccccccchh-HHHHhhcc-----ccchh------hccccC-CCCCcccccccchHhHHH
Q 006506 389 MKLWFFRNTFKEATVQVLNIEQLNLESHDK-AILIHMFL-----PVEYR------VSLLSV-DGPSIHSKMQYISVFSHL 455 (643)
Q Consensus 389 mk~wF~~n~~~~a~I~vini~~f~~~~~~~-~~l~~l~~-----~~efr------~~f~~~-~~p~~~~r~~ylS~l~y~ 455 (643)
|++||.+|++++|+|||+++++|+|.+.+. ++++++.. +..|+ ..|.+. ..+....+|+|+|+++|+
T Consensus 255 M~~WF~~n~~~~a~v~V~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkylS~lnYl 334 (535)
T PLN02867 255 MHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNHL 334 (535)
T ss_pred HHHHHhhCCCccceEEEEeehhccccccccccHHHHHHHhhhhhhhhhccccccccccccccccchhhcChhhhhHHHHH
Confidence 999999999999999999999999998653 33333321 00110 012111 122334459999999999
Q ss_pred HhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeecccc--cc---hhhhhhhhc------cCCCCCCCCcc
Q 006506 456 HYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS--VS---LGQLKSYLG------ENSYDKNSCAW 524 (643)
Q Consensus 456 Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~--~~---~~~~~~yl~------~~~~~~~~cyf 524 (643)
||+||++||+++||||||+||||++||++||++||+|+++|||.|+. .. ..++.+|++ ..+++++.|||
T Consensus 335 RflIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~p~~cYF 414 (535)
T PLN02867 335 RIYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQERCAW 414 (535)
T ss_pred HHHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCCCCCcce
Confidence 99999999999999999999999999999999999999999997642 21 123456665 45788899999
Q ss_pred ccceEEechHHHHHhhHHHHHHHHHHHccC-CccccccccccchhhhccCceEEeCCcccccCCCCCCCC-CHhhhcCCe
Q 006506 525 MSGLNIVDLARWRELDLTKTYQRLVREVSM-GEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGL-NIEAIKKAA 602 (643)
Q Consensus 525 NSGVlLINL~kWRk~nitek~~~~l~~~~~-DQDlLN~GtLP~~nl~F~g~i~~Ld~~WN~~~lg~d~~i-~~~~i~~p~ 602 (643)
|||||||||++||++++++++++|++++.+ +..++..|+||+++++|+|+|++||++||+.++||+... ..+.+++|+
T Consensus 415 NSGVmLINL~~WRe~nITek~~~~Le~n~~~~~~l~dqd~LN~~LlvF~g~v~~LD~rWNv~gLgy~~~~~~~~~i~~pa 494 (535)
T PLN02867 415 LYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQPGALPPALLAFKGHVHPIDPSWHVAGLGSRPPEVPREILESAA 494 (535)
T ss_pred ecceeeeeHHHHHHhcHHHHHHHHHHhchhcccccccccccchHHHHhcCcEEECChhhcccCCCcccccchhhhcCCcE
Confidence 999999999999999999999999987643 356677777888999999999999999999999887543 335678999
Q ss_pred EEEccCCCCCcccCCccchHHHHHHHHhhCchhhccccCC
Q 006506 603 VLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 642 (643)
Q Consensus 603 IIHY~G~~KPW~~~~~~~y~~lW~kY~~~s~~fl~~Cni~ 642 (643)
||||+|++|||++++.++|+++|.+|++++++|+|+|||.
T Consensus 495 IIHYnG~~KPW~e~~~~~yR~~W~kyl~~~~~fl~~cni~ 534 (535)
T PLN02867 495 VLHFSGPAKPWLEIGFPEVRSLWYRHVNFSDKFIRKCRIM 534 (535)
T ss_pred EEEECCCCCcccccCCCchhHHHHHhcCccchHHHhcccC
Confidence 9999999999999999999999999999999999999996
No 9
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=2.8e-100 Score=831.18 Aligned_cols=395 Identities=33% Similarity=0.602 Sum_probs=353.8
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCcccccccccc
Q 006506 241 ESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRL 320 (643)
Q Consensus 241 ~~~~d~~l~~~~~~~~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~l~~laa~~~Pk~lhcL~~rl 320 (643)
|...|.++|+++.+.|.+|. +.++||.+|++|||||++++||+++++++|+.++.||||+|+|||||||+|||
T Consensus 107 e~~~~~~~~~~~~~~~~~~~-------~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa~t~PK~lHCL~mrL 179 (534)
T PLN02659 107 ELKGRSDIPQTLEEFMDEVK-------NSRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRL 179 (534)
T ss_pred ccCCccccchHHHHHHHHHH-------hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhh
Confidence 67778889988877766665 48999999999999999999999999877776666899999999999999999
Q ss_pred chhhhcCCcccccccccc---CCCCCCceEEEEEeCCchhhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhcc
Q 006506 321 TVEYFKSPSVVMELSQAD---RFSDPSLHHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNT 397 (643)
Q Consensus 321 t~ey~~~~~~~~~~p~~~---~l~D~~~iHIv~~sDNvLaasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~ 397 (643)
|+|||.+++.++++|+++ +|+||+++|||+||||+||+||||||++.|+++|++++||||||++|+.+|++||.+|+
T Consensus 180 t~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~VFHivTD~~ny~aM~~WF~~n~ 259 (534)
T PLN02659 180 ANEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLHIITDRKTYSPMQAWFSLHP 259 (534)
T ss_pred HHHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCC
Confidence 999999999999998776 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEccccccccchh-HHHHhhccccchhhccccC---------CCCC------cccccccchHhHHHHhhhhh
Q 006506 398 FKEATVQVLNIEQLNLESHDK-AILIHMFLPVEYRVSLLSV---------DGPS------IHSKMQYISVFSHLHYLLPE 461 (643)
Q Consensus 398 ~~~a~I~vini~~f~~~~~~~-~~l~~l~~~~efr~~f~~~---------~~p~------~~~r~~ylS~l~y~Rf~IPe 461 (643)
+++|+|||+++++|+|.+... ++++|+..+.+++.+|++. ++|. ...+|+|+|+++|+||+||+
T Consensus 260 ~~~a~v~V~~~e~f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPe 339 (534)
T PLN02659 260 LSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPE 339 (534)
T ss_pred CccceEEEEeehhcccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccccccCCccceeHHHHHHHHHHH
Confidence 999999999999999988653 6788988777777777521 1221 12459999999999999999
Q ss_pred hhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeecccccc--h---hhhhhhhc------cCCCCCCCCccccceEE
Q 006506 462 IFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS--L---GQLKSYLG------ENSYDKNSCAWMSGLNI 530 (643)
Q Consensus 462 LLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~~~--~---~~~~~yl~------~~~~~~~~cyfNSGVlL 530 (643)
+||+++||||||+||||++||++||++||+|+++|||+||... + +++.+|++ ...|+++.||||+||||
T Consensus 340 LLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlL 419 (534)
T PLN02659 340 LFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNI 419 (534)
T ss_pred HhhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceecceeE
Confidence 9999999999999999999999999999999999999999532 1 34455543 23578889999999999
Q ss_pred echHHHHHhhHHHHHHHHHHHcc-CCccccccccccchhhhccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCC
Q 006506 531 VDLARWRELDLTKTYQRLVREVS-MGEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGN 609 (643)
Q Consensus 531 INL~kWRk~nitek~~~~l~~~~-~DQDlLN~GtLP~~nl~F~g~i~~Ld~~WN~~~lg~d~~i~~~~i~~p~IIHY~G~ 609 (643)
|||++||++++++++++|++++. .+...|..|+|||+|++|+|++++||.+||+.++||+.....+.+++|+||||+|+
T Consensus 420 INLk~WRe~nITek~l~~l~~n~~~~l~l~DQdaLp~~LivF~g~v~~LD~rWN~~gLg~~~~~~~~~i~~paIIHYnG~ 499 (534)
T PLN02659 420 FDLEAWRKTNISSTYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAESAGVVHFNGR 499 (534)
T ss_pred eeHHHHHhcChHHHHHHHHHhcccccccccccccchHHHHHhcCCEEECChhheecCCcccccccccccCCcEEEEECCC
Confidence 99999999999999999998864 35566777888999999999999999999999999987655667889999999999
Q ss_pred CCCcccCCccchHHHHHHHHhhCchhhccccCC
Q 006506 610 MKPWLELGIPRYKKFWKKFLNQEDQLLSECNVH 642 (643)
Q Consensus 610 ~KPW~~~~~~~y~~lW~kY~~~s~~fl~~Cni~ 642 (643)
+|||++++.++|+++|.+|++++++|||+|||+
T Consensus 500 ~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 532 (534)
T PLN02659 500 AKPWLDIAFPQLRPLWAKYIDSSDKFIKSCHIR 532 (534)
T ss_pred CCccccccCCcchhHHHHHhccCCHHHHhcCCC
Confidence 999999999999999999999999999999996
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=1.5e-53 Score=437.43 Aligned_cols=255 Identities=44% Similarity=0.760 Sum_probs=217.7
Q ss_pred eEEEEEeCCchhhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchh-HHHHhh
Q 006506 346 HHYVIFSTNVLASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDK-AILIHM 424 (643)
Q Consensus 346 iHIv~~sDNvLaasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~~-~~l~~l 424 (643)
+|||+++||+++++|++.|++.|+++|.+++|||+||+++.++|++||...+..+++|+|++++++.+.+... ..++++
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 6999999999999999999999999989999999999999999999999888889999999998876644321 123333
Q ss_pred ccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeecccccc
Q 006506 425 FLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS 504 (643)
Q Consensus 425 ~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~~~ 504 (643)
.... . .......+++++|.++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+|
T Consensus 81 ~~~~------~--~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d---- 148 (257)
T cd06429 81 ESEA------D--TSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET---- 148 (257)
T ss_pred hccc------c--ccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh----
Confidence 2110 0 111122357899999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhhhhccCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHccC-CccccccccccchhhhccCceEEeCCccc
Q 006506 505 LGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM-GEESKEAVALRGSLLTFQDLVYALDGVWA 583 (643)
Q Consensus 505 ~~~~~~yl~~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~~-DQDlLN~GtLP~~nl~F~g~i~~Ld~~WN 583 (643)
|||||||||||++||++++++++++|+++... ++..+..|+||++|++|+|++..||++||
T Consensus 149 ------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~~~~~L~~~wN 210 (257)
T cd06429 149 ------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYGLTSPLDPSWH 210 (257)
T ss_pred ------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccCeeEECChHHc
Confidence 79999999999999999999999999987543 23455667778889999999999999999
Q ss_pred ccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCCccchHHHHHHHHh
Q 006506 584 LSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLN 630 (643)
Q Consensus 584 ~~~lg~d~~i~~~~i~~p~IIHY~G~~KPW~~~~~~~y~~lW~kY~~ 630 (643)
++++|++.....+.+++|+||||+|+.|||+..+.++|+++||+|++
T Consensus 211 ~~~l~~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~~~~~~~w~~yl~ 257 (257)
T cd06429 211 VRGLGYNYGIRPQDIKAAAVLHFNGNMKPWLRTAIPSYKELWEKYLS 257 (257)
T ss_pred ccCCcccccccccccCCcEEEEECCCCCCcCCCCCChHHHHHHHHhC
Confidence 99888875544456779999999999999999988999999999974
No 11
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.6e-42 Score=366.20 Aligned_cols=252 Identities=17% Similarity=0.247 Sum_probs=189.8
Q ss_pred CCceEEEE-EeCCchh-hHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHh-ccCCCceEEEEEccccccccchhH
Q 006506 343 PSLHHYVI-FSTNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFR-NTFKEATVQVLNIEQLNLESHDKA 419 (643)
Q Consensus 343 ~~~iHIv~-~sDNvLa-asVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~-n~~~~a~I~vini~~f~~~~~~~~ 419 (643)
+..+|||+ +|+|++. ++|+|+|++.|+++ ..++|||++++++.+.++.+-.. ..+ +..|+++.++.-.
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~~l~~l~~~~-~~~i~~~~id~~~------- 93 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQRFSALAKQY-NTRINIYLINCER------- 93 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHHHHHHHHHhc-CCeEEEEEeCHHH-------
Confidence 46899999 5667776 56999999999875 47999999999999888766322 233 4456665543211
Q ss_pred HHHhhccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhc-cCCeEEEEecceeEeCCchHHHcccCCCCeeeee
Q 006506 420 ILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAV 498 (643)
Q Consensus 420 ~l~~l~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP-~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAV 498 (643)
++ ..|. ..++|.++|+||+||++|| +++||||||+|+||++||++||++||++..+|||
T Consensus 94 -~~---------------~~~~----~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav 153 (334)
T PRK15171 94 -LK---------------SLPS----TKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAV 153 (334)
T ss_pred -Hh---------------CCcc----cCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEE
Confidence 10 1111 2468899999999999999 6999999999999999999999999996666666
Q ss_pred -cccccchhhhhhhhccCCCCC-CCCccccceEEechHHHHHhhHHHHHHHHHHHcc-------CCccccccccccchhh
Q 006506 499 -QSCSVSLGQLKSYLGENSYDK-NSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS-------MGEESKEAVALRGSLL 569 (643)
Q Consensus 499 -eDc~~~~~~~~~yl~~~~~~~-~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~-------~DQDlLN~GtLP~~nl 569 (643)
.|+.... +.++....+... ...|||||||||||++||++++++++++++.+.. .|||+|| +
T Consensus 154 ~~d~~~~~--~~~~~~~l~~~~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN--------~ 223 (334)
T PRK15171 154 VAEGDAEW--WSKRAQSLQTPGLASGYFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRITHLDQDVLN--------I 223 (334)
T ss_pred EeccchhH--HHHHHHhcCCccccccceecceEEEcHHHHHHhhHHHHHHHHHhccccccceeecChhHHH--------H
Confidence 4543211 111111222211 2469999999999999999999999999987531 2999995 7
Q ss_pred hccCceEEeCCcccccCCCCCCCC----CHhhhcCCeEEEccCCCCCcccCCccchHHHHHHHHhhCch
Q 006506 570 TFQDLVYALDGVWALSGLGHDYGL----NIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQ 634 (643)
Q Consensus 570 ~F~g~i~~Ld~~WN~~~lg~d~~i----~~~~i~~p~IIHY~G~~KPW~~~~~~~y~~lW~kY~~~s~~ 634 (643)
+|.|+|..||.+||++. +..... ......+|+||||+|+.|||...+.++++++||+|+..++.
T Consensus 224 ~~~~~~~~L~~~wN~~~-~~~~~~~~~~~~~~~~~p~IIHy~G~~KPW~~~~~~~~~~~f~~~~~~spw 291 (334)
T PRK15171 224 LLAGKVKFIDAKYNTQF-SLNYELKDSVINPVNDETVFIHYIGPTKPWHSWADYPVSQYFLKAKEASPW 291 (334)
T ss_pred HHcCCeEECCHhhCCcc-chhHHHHhcccccccCCCEEEEECCCCCCCCCCCCCchHHHHHHHHhcCCC
Confidence 99999999999999873 221111 11224579999999999999988889999999999998754
No 12
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=100.00 E-value=3.1e-40 Score=342.79 Aligned_cols=251 Identities=20% Similarity=0.306 Sum_probs=185.3
Q ss_pred EEEEeCCch-hhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHHhhcc
Q 006506 348 YVIFSTNVL-ASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFL 426 (643)
Q Consensus 348 Iv~~sDNvL-aasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~~~~l~~l~~ 426 (643)
||++.+||. .++|+|+|++.|+. ..++|||++++++.+.++.+.......++.|.+++++++. +.+
T Consensus 5 iv~~~~~y~~~~~~~i~Sil~n~~--~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~---------~~~-- 71 (280)
T cd06431 5 IVCAGYNASRDVVTLVKSVLFYRR--NPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELK---------SRV-- 71 (280)
T ss_pred EEEccCCcHHHHHHHHHHHHHcCC--CCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhh---------hhh--
Confidence 444457775 46799999999985 4699999999999999888864434447788888775321 000
Q ss_pred ccchhhccccCCCCCcccccccch-HhHHHHhhhhhhhc-cCCeEEEEecceeEeCCchHHHcc--cCCC-Ceeeeeccc
Q 006506 427 PVEYRVSLLSVDGPSIHSKMQYIS-VFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDI--NMGG-KVNGAVQSC 501 (643)
Q Consensus 427 ~~efr~~f~~~~~p~~~~r~~ylS-~l~y~Rf~IPeLLP-~ldKVLYLD~DvVV~~DLseLw~i--DL~g-kviaAVeDc 501 (643)
. ..| ..++| ..+|+||+||++|| +++||||||+|+||++||++||++ |+.| +++|||++.
T Consensus 72 --------~--~~~-----~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~ 136 (280)
T cd06431 72 --------S--WIP-----NKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQ 136 (280)
T ss_pred --------c--cCc-----ccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccc
Confidence 0 001 12344 44889999999999 799999999999999999999998 6755 467777765
Q ss_pred ccchhhhhhhhc--cCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHc--------cCCccccccccccchhhhc
Q 006506 502 SVSLGQLKSYLG--ENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREV--------SMGEESKEAVALRGSLLTF 571 (643)
Q Consensus 502 ~~~~~~~~~yl~--~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~--------~~DQDlLN~GtLP~~nl~F 571 (643)
...+ ..... ...+.....|||||||||||++||++++++++..+.++. -.|||+|| ++|
T Consensus 137 ~~~~---~~~~~~~~~~~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN--------~v~ 205 (280)
T cd06431 137 SDWY---LGNLWKNHRPWPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFN--------AVI 205 (280)
T ss_pred hhhh---hhhhhhccCCCcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHH--------HHH
Confidence 3211 11100 111112235999999999999999999999988666542 13999996 689
Q ss_pred cCc---eEEeCCcccccCCCCCCCCCH--hhhcCCeEEEccCCCCCcccCCc-cchHHHHHHHHhhCchhhcc
Q 006506 572 QDL---VYALDGVWALSGLGHDYGLNI--EAIKKAAVLHYNGNMKPWLELGI-PRYKKFWKKFLNQEDQLLSE 638 (643)
Q Consensus 572 ~g~---i~~Ld~~WN~~~lg~d~~i~~--~~i~~p~IIHY~G~~KPW~~~~~-~~y~~lW~kY~~~s~~fl~~ 638 (643)
.++ ++.||++||++. +....... ...++|+||||+|+.|||...+. ++|+++|.+|.+++..-||+
T Consensus 206 ~~~~~~~~~L~~~wN~~~-~~~~~~~~~~~~~~~p~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (280)
T cd06431 206 KQNPFLVYQLPCAWNVQL-SDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRR 277 (280)
T ss_pred cCCcceeEECCCcccccc-CccchHhHhhcCcCCCEEEEeCCCCCCCCcCCCChHHHHHHHHHHhcCchhhhh
Confidence 999 899999999984 22211111 12468999999999999998775 99999999999999988875
No 13
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=100.00 E-value=1.3e-39 Score=329.57 Aligned_cols=232 Identities=22% Similarity=0.270 Sum_probs=178.3
Q ss_pred eEEEE-EeC-Cchh-hHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHH
Q 006506 346 HHYVI-FST-NVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILI 422 (643)
Q Consensus 346 iHIv~-~sD-NvLa-asVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~~~~l~ 422 (643)
||||+ ++| ||+. ++|+|+|+++|+++ .++|||++++++.+..+.+.......+..+++++++...+..
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~------- 71 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVD------- 71 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcch-------
Confidence 68888 666 6776 56999999999986 799999999999988777644332236678887764322110
Q ss_pred hhccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeecccc
Q 006506 423 HMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 502 (643)
Q Consensus 423 ~l~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~ 502 (643)
.+. ..++++..+|+||+||++||+++||||||+|+||++||++||++|++++++|||+||.
T Consensus 72 ----------------~~~---~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~ 132 (246)
T cd00505 72 ----------------SEH---LKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPG 132 (246)
T ss_pred ----------------hhh---hcCccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCch
Confidence 000 0256788999999999999999999999999999999999999999999999999997
Q ss_pred cchhhhhhhhccCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHcc-----CCccccccccccchhhhccCc---
Q 006506 503 VSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS-----MGEESKEAVALRGSLLTFQDL--- 574 (643)
Q Consensus 503 ~~~~~~~~yl~~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~-----~DQDlLN~GtLP~~nl~F~g~--- 574 (643)
.... ...+-...+...+.+|||||||||||++||++++.+++.+++.+.. .|||++| .+|.++
T Consensus 133 ~~~~-~~~~~~~~~~~~~~~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN--------~~~~~~~~~ 203 (246)
T cd00505 133 DRRE-GKYYRQKRSHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLN--------TFFKQVPFI 203 (246)
T ss_pred hhhc-cchhhcccCCCCCCCceeeeeEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHH--------HHHhcCCCe
Confidence 4211 0111112344456789999999999999998888888877655432 3999996 689998
Q ss_pred eEEeCCcccccCCCCCCCC--CHhhhcCCeEEEccCCCCCcc
Q 006506 575 VYALDGVWALSGLGHDYGL--NIEAIKKAAVLHYNGNMKPWL 614 (643)
Q Consensus 575 i~~Ld~~WN~~~lg~d~~i--~~~~i~~p~IIHY~G~~KPW~ 614 (643)
+..||.+||++..++.... ..+..++|+||||+|+.|||.
T Consensus 204 i~~L~~~wN~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~ 245 (246)
T cd00505 204 VKSLPCIWNVRLTGCYRSLNCFKAFVKNAKVIHFNGPTKPWN 245 (246)
T ss_pred EEECCCeeeEEecCccccccchhhhcCCCEEEEeCCCCCCCC
Confidence 9999999999865543221 134677999999999999996
No 14
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=100.00 E-value=3.5e-38 Score=318.26 Aligned_cols=232 Identities=22% Similarity=0.303 Sum_probs=179.4
Q ss_pred eEEEEE-eCCchh-hHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHHh
Q 006506 346 HHYVIF-STNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIH 423 (643)
Q Consensus 346 iHIv~~-sDNvLa-asVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~~~~l~~ 423 (643)
+|||++ +++++. ++|+++|+++|+++ +.++|||++++++.+.++.+...-...+..|+++.++.-. ...
T Consensus 1 ~~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~--------~~~ 71 (248)
T cd04194 1 MNIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDD--------FKF 71 (248)
T ss_pred CCEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHH--------Hhc
Confidence 689995 556876 45999999999986 5799999999998887766532211135677776654211 100
Q ss_pred hccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeeccccc
Q 006506 424 MFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSV 503 (643)
Q Consensus 424 l~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~~ 503 (643)
.+. ..++++..+|+||++|+++|+++||||||+|+||++||++||++|++|+++|||+||..
T Consensus 72 ---------------~~~---~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~ 133 (248)
T cd04194 72 ---------------FPA---TTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFI 133 (248)
T ss_pred ---------------CCc---ccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccH
Confidence 010 13567889999999999999999999999999999999999999999999999999975
Q ss_pred chhhhhhhhccCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHcc-----CCccccccccccchhhhccCceEEe
Q 006506 504 SLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS-----MGEESKEAVALRGSLLTFQDLVYAL 578 (643)
Q Consensus 504 ~~~~~~~yl~~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~-----~DQDlLN~GtLP~~nl~F~g~i~~L 578 (643)
....... ...+.....+||||||||+|+++||+.++++++++++++.. .||+++| .+|++++..|
T Consensus 134 ~~~~~~~--~~~~~~~~~~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN--------~~~~~~~~~L 203 (248)
T cd04194 134 EQEKKRK--RRLGGYDDGSYFNSGVLLINLKKWREENITEKLLELIKEYGGRLIYPDQDILN--------AVLKDKILYL 203 (248)
T ss_pred HHHHHHH--hhcCCCcccceeeecchheeHHHHHHhhhHHHHHHHHHhCCCceeeCChHHHH--------HHHhCCeEEc
Confidence 3211111 12334456789999999999999999999999999998864 3999985 7999999999
Q ss_pred CCcccccCCCCCCCC--------CHhhhcCCeEEEccCCCCCcc
Q 006506 579 DGVWALSGLGHDYGL--------NIEAIKKAAVLHYNGNMKPWL 614 (643)
Q Consensus 579 d~~WN~~~lg~d~~i--------~~~~i~~p~IIHY~G~~KPW~ 614 (643)
|.+||++...+.... .....++|+||||+|+.|||.
T Consensus 204 ~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~ 247 (248)
T cd04194 204 PPRYNFQTGFYYLLKKKSKEEQELEEARKNPVIIHYTGSDKPWN 247 (248)
T ss_pred CcccccchhHhHHhhccchhHHHHHHHhcCCEEEEeCCCCCCCC
Confidence 999999854332111 124578899999999999997
No 15
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-37 Score=326.20 Aligned_cols=249 Identities=24% Similarity=0.304 Sum_probs=192.8
Q ss_pred ceEEEE-EeCCch-hhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHH-hccCC-CceEEEEEccccccccchhHH
Q 006506 345 LHHYVI-FSTNVL-ASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFF-RNTFK-EATVQVLNIEQLNLESHDKAI 420 (643)
Q Consensus 345 ~iHIv~-~sDNvL-aasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~-~n~~~-~a~I~vini~~f~~~~~~~~~ 420 (643)
.++||+ +|+||+ +++|+|.|++.|++. -.+.|||++++++.+.++++-. ..+++ .+.+.+++++.++
T Consensus 2 ~~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~-------- 72 (325)
T COG1442 2 TIPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFL-------- 72 (325)
T ss_pred cccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhhh--------
Confidence 478999 566776 577999999999985 4799999999999999888743 45665 5666666665443
Q ss_pred HHhhccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeecc
Q 006506 421 LIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQS 500 (643)
Q Consensus 421 l~~l~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeD 500 (643)
..|. ..+.+|.++|+||+||++||+++|+||||+||||+|||++||.+|++++++|||.|
T Consensus 73 -----------------~~~~---~~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D 132 (325)
T COG1442 73 -----------------DYPP---FTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRD 132 (325)
T ss_pred -----------------cccc---cccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEee
Confidence 1110 13567899999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhhccC-CCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHccC-----CccccccccccchhhhccCc
Q 006506 501 CSVSLGQLKSYLGEN-SYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM-----GEESKEAVALRGSLLTFQDL 574 (643)
Q Consensus 501 c~~~~~~~~~yl~~~-~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~~-----DQDlLN~GtLP~~nl~F~g~ 574 (643)
+...... +...+. .......|||+|||++|++.||++++++++++++++..+ |||++| ++|+++
T Consensus 133 ~~~~~~~--~~~~~~~~~~~~~~yFNaG~llinl~~W~~~~i~~k~i~~~~~~~~~~~~~DQdiLN--------~i~~~~ 202 (325)
T COG1442 133 VFSHYMK--EGALRLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKENDLLYPDQDILN--------MIFEDR 202 (325)
T ss_pred hhhhhhh--hhhhHhhhcccccccCccceeeehHHHHHHhhhHHHHHHHHhccccccCCccccHHH--------HHHHhh
Confidence 8642111 101111 112345699999999999999999999999999866432 899985 799999
Q ss_pred eEEeCCcccccCCCCCCCC-C---HhhhcCCeEEEccCCCCCcccCCccch-HHHHHHHHhhCc
Q 006506 575 VYALDGVWALSGLGHDYGL-N---IEAIKKAAVLHYNGNMKPWLELGIPRY-KKFWKKFLNQED 633 (643)
Q Consensus 575 i~~Ld~~WN~~~lg~d~~i-~---~~~i~~p~IIHY~G~~KPW~~~~~~~y-~~lW~kY~~~s~ 633 (643)
+.+||.+||.+... .... . .....+|.|+||+|+.|||...+.+.+ ...|...+..++
T Consensus 203 ~~~L~~~YN~~~~~-~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~w~~i~~~~p 265 (325)
T COG1442 203 VLELPIRYNAIPYI-DSQLKDKYIYPFGDDPVILHYAGPTKPWHSDSSNYPRSHEWHEILAETP 265 (325)
T ss_pred hhccCcccceeehh-hhccchhhhccCCCCceEEEecCCCCCCcCccccccHHHHHHHHHhcCC
Confidence 99999999998432 2111 1 334567999999999999999886655 477777766554
No 16
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=100.00 E-value=2e-34 Score=284.66 Aligned_cols=238 Identities=18% Similarity=0.271 Sum_probs=159.8
Q ss_pred EEEE-EeCCchh-hHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhc-cCCCceEEEEEccccccccchhHHHHh
Q 006506 347 HYVI-FSTNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRN-TFKEATVQVLNIEQLNLESHDKAILIH 423 (643)
Q Consensus 347 HIv~-~sDNvLa-asVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n-~~~~a~I~vini~~f~~~~~~~~~l~~ 423 (643)
||++ +++||+. ++|+|+|++.|++++..++|||++++++.+.++.+.... .+.. +..+...+ ...+..
T Consensus 1 ~i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-------~~~~~~ 71 (250)
T PF01501_consen 1 HIVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIE--IEPIEFPD-------ISMLEE 71 (250)
T ss_dssp -EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCT--TECEEETS-------GGHHH-
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccc--eeeeccch-------HHhhhh
Confidence 7899 4556775 569999999999987789999999999988887764322 1111 11111110 000100
Q ss_pred hccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeeccccc
Q 006506 424 MFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSV 503 (643)
Q Consensus 424 l~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~~ 503 (643)
. ........+++..+|+||+++++|++++||||||+|+||.+||++||+++++|+.+||++|+..
T Consensus 72 ~---------------~~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~ 136 (250)
T PF01501_consen 72 F---------------QFNSPSKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESF 136 (250)
T ss_dssp ----------------TTS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----
T ss_pred h---------------hhcccccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchh
Confidence 0 0001123677899999999999999999999999999999999999999999999999999432
Q ss_pred chh-hhhhhhccCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHccC-----CccccccccccchhhhccCceEE
Q 006506 504 SLG-QLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM-----GEESKEAVALRGSLLTFQDLVYA 577 (643)
Q Consensus 504 ~~~-~~~~yl~~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~~-----DQDlLN~GtLP~~nl~F~g~i~~ 577 (643)
... ...............+|||+|||++|+++||++++.+++..+++.... ||+++ |++|++++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~l--------n~~~~~~~~~ 208 (250)
T PF01501_consen 137 DNFPNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDIL--------NIVFYGNIKP 208 (250)
T ss_dssp HHHHTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHH--------HHHHTTGEEE
T ss_pred hhhhhcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhcccccCcCchHHH--------hhhccceeEE
Confidence 110 000111111223457899999999999999999999999999876532 88887 4799999999
Q ss_pred eCCcccccCCCCCCC--CCHhhhcCCeEEEccCCCCCcccC
Q 006506 578 LDGVWALSGLGHDYG--LNIEAIKKAAVLHYNGNMKPWLEL 616 (643)
Q Consensus 578 Ld~~WN~~~lg~d~~--i~~~~i~~p~IIHY~G~~KPW~~~ 616 (643)
||.+||++..++... ......++++||||+|..|||...
T Consensus 209 L~~~~N~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~ 249 (250)
T PF01501_consen 209 LPCRYNCQPSWYNQSDDYFNPILEDAKIIHYSGPPKPWKST 249 (250)
T ss_dssp EEGGGSEEHHHHHHTHHHHHHHGCC-SEEE--SSS-TTSTT
T ss_pred ECchhccccccccccchhhHhhcCCeEEEEeCCCCcCCCCC
Confidence 999999986544100 112456889999999999999864
No 17
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.98 E-value=1.2e-31 Score=280.40 Aligned_cols=244 Identities=12% Similarity=0.256 Sum_probs=166.3
Q ss_pred eEEEE-EeCCchh-hHHHHHHHHHhcCCCCCeEEEEEeCC-CCHHHH---HHHHHhccCC-CceEEEEEccccccccchh
Q 006506 346 HHYVI-FSTNVLA-SSVVINSTVLCARESKNQVFHVLTDG-QNYFAM---KLWFFRNTFK-EATVQVLNIEQLNLESHDK 418 (643)
Q Consensus 346 iHIv~-~sDNvLa-asVvInSil~N~~~p~~i~FHIItD~-in~~~m---k~wF~~n~~~-~a~I~vini~~f~~~~~~~ 418 (643)
+|+|+ +.++.+. +.|+|+|++.|+. ..++|||++|+ ...+.. +.|-. .+. .....+..+ .
T Consensus 1 ~~~~vv~~g~~~~~~~~~lkSil~~n~--~~l~Fhi~~d~~~~~~~~~~l~~~~~--~~~~~i~~~i~~I---~------ 67 (304)
T cd06430 1 MHLAVVACGERLEETLTMLKSAIVFSQ--KPLRFHIFAEDQLKQSFKEKLDDWPE--LIDRKFNYTLHPI---T------ 67 (304)
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHHhCC--CCEEEEEEECCccCHHHHHHHHHHHH--hccceeeeEEEEE---e------
Confidence 57777 4444354 5689999999985 47999999998 444333 33411 111 111122111 1
Q ss_pred HHHHhhccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcc--cCCCC-ee
Q 006506 419 AILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDI--NMGGK-VN 495 (643)
Q Consensus 419 ~~l~~l~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~i--DL~gk-vi 495 (643)
+|.+ . .. .....+++.+|+||+||++||++|||||||+|+||.+||++||++ |++++ ++
T Consensus 68 -------~P~~--------~-~~--~ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~a 129 (304)
T cd06430 68 -------FPSG--------N-AA--EWKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLA 129 (304)
T ss_pred -------cCcc--------c-hh--hhhhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcCCCeEE
Confidence 1110 0 00 012345678999999999999999999999999999999999999 99986 45
Q ss_pred eeecccccc-hhhhhhhhccCCCCCCCCccccceEEechHHHHH-----------hhHHHHHHHHHHHcc-----CCccc
Q 006506 496 GAVQSCSVS-LGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRE-----------LDLTKTYQRLVREVS-----MGEES 558 (643)
Q Consensus 496 aAVeDc~~~-~~~~~~yl~~~~~~~~~cyfNSGVlLINL~kWRk-----------~nitek~~~~l~~~~-----~DQDl 558 (643)
|++++-... .+.+.++. ..++ ....|||||||||||++||+ .+++++++++++++. .|||+
T Consensus 130 A~v~e~~~~~~~~~~~~~-~~~~-~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~DQDi 207 (304)
T cd06430 130 AMAPEHEEPNIGWYNRFA-RHPY-YGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKLKITWGDQDL 207 (304)
T ss_pred EEEecccccchhhhhhhc-ccCc-ccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcccCCCCCCHHH
Confidence 555553221 11122111 1222 12347999999999999999 789999999998864 39999
Q ss_pred cccccccchhhhccCc---eEEeCCcccccCCC--CCCCCCHhhhcCCeEEEccCCCCCcccCCccchHHHHHHHHhhC
Q 006506 559 KEAVALRGSLLTFQDL---VYALDGVWALSGLG--HDYGLNIEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQE 632 (643)
Q Consensus 559 LN~GtLP~~nl~F~g~---i~~Ld~~WN~~~lg--~d~~i~~~~i~~p~IIHY~G~~KPW~~~~~~~y~~lW~kY~~~s 632 (643)
+| ++|+++ ++.||++||++... |.........+.++|||++++.| .....+.|+.++.-..+++
T Consensus 208 LN--------~v~~~~p~~~~~Lp~~wN~~~d~~~y~~~~~~~~~~~~~~~H~n~~~~--~~~~~~~f~~~~~~~~~~~ 276 (304)
T cd06430 208 IN--------IIFHHNPEMLYVFPCHWNYRPDHCMYGSNCKAAEEEGVFILHGNRGVY--HSDKQPAFRAVYEAIREYT 276 (304)
T ss_pred HH--------HHHcCCCCeEEEcCccccCCccceeecccccccccccceEEEcCCCCC--CCccchHHHHHHHHHHhcc
Confidence 96 688887 89999999987522 22122223446899999998777 4455678899998888877
No 18
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=99.97 E-value=8e-32 Score=275.42 Aligned_cols=220 Identities=15% Similarity=0.202 Sum_probs=159.2
Q ss_pred eEEEE-EeCC-ch-hhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHH-hccCCCceEEEEEccccccccchhHHH
Q 006506 346 HHYVI-FSTN-VL-ASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFF-RNTFKEATVQVLNIEQLNLESHDKAIL 421 (643)
Q Consensus 346 iHIv~-~sDN-vL-aasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~-~n~~~~a~I~vini~~f~~~~~~~~~l 421 (643)
|||+. .+++ |. .++|++.|++.|+. ..++|||++++++.+..+.+-. ...+ ++.++++.++.-.+.
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~--~~~~fyil~~~is~e~~~~l~~~~~~~-~~~i~~i~i~~~~~~------- 70 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTK--SPVKFWFIKNFLSPQFKEFLPEMAKEY-GFEYELVTYKWPRWL------- 70 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHHHHh-CCceEEEEecChhhh-------
Confidence 57777 4544 54 46799999999985 4799999999999887766532 2233 567777776311110
Q ss_pred HhhccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhc-cCCeEEEEecceeEeCCchHHHcccCCCCeeeeecc
Q 006506 422 IHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQS 500 (643)
Q Consensus 422 ~~l~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP-~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeD 500 (643)
+ ..+. ..+ ...+|.|++++++|| +++||||||+|+||.+||++||++||+|+++|||+|
T Consensus 71 -------------~--~~~~----~~~-~~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d 130 (248)
T cd06432 71 -------------H--KQTE----KQR-IIWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPF 130 (248)
T ss_pred -------------h--cccc----cch-hHHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeec
Confidence 0 0010 011 256789999999999 799999999999999999999999999999999999
Q ss_pred cccchh----hh--hhhhccCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHH---cc-----CCccccccccccc
Q 006506 501 CSVSLG----QL--KSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVRE---VS-----MGEESKEAVALRG 566 (643)
Q Consensus 501 c~~~~~----~~--~~yl~~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~---~~-----~DQDlLN~GtLP~ 566 (643)
|..... ++ ..| ...++ .+..|||||||||||++||++++++++.++++. .. .|||++|
T Consensus 131 ~~~~~~~~~~~~~~~~~-~~~~l-~~~~YfNSGVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN------ 202 (248)
T cd06432 131 CDSRKEMDGFRFWKQGY-WKSHL-RGRPYHISALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPN------ 202 (248)
T ss_pred cccchhcccchhhhhhh-hhhhc-CCCCccceeeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhH------
Confidence 864210 00 111 01122 244699999999999999999999977776653 21 2999996
Q ss_pred hhhhccCc-eEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCC
Q 006506 567 SLLTFQDL-VYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGN 609 (643)
Q Consensus 567 ~nl~F~g~-i~~Ld~~WN~~~lg~d~~i~~~~i~~p~IIHY~G~ 609 (643)
.++.++ +++||.+||++. ++. ..+..+.|.+|||..+
T Consensus 203 --~v~~~~~i~~Lp~~w~~~~-~~~---~~~~~~~~~~~~~~~~ 240 (248)
T cd06432 203 --NMQHQVPIFSLPQEWLWCE-TWC---SDESKKKAKTIDLCNN 240 (248)
T ss_pred --HHhccCCeEECChHHHHHH-HHh---cccccCccceeecccC
Confidence 578775 999999999973 222 1244678999999764
No 19
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.93 E-value=1e-24 Score=221.27 Aligned_cols=217 Identities=16% Similarity=0.120 Sum_probs=149.7
Q ss_pred EEEE-E-eCCchh-hHHHHHHHHHhcCCCCCeEEEEEe-CCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHH
Q 006506 347 HYVI-F-STNVLA-SSVVINSTVLCARESKNQVFHVLT-DGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILI 422 (643)
Q Consensus 347 HIv~-~-sDNvLa-asVvInSil~N~~~p~~i~FHIIt-D~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~~~~l~ 422 (643)
++|. + +|||+. ++|++.|+++|+++ +.+||+. ++++.+.++.+-.. + .+++.++.+.....
T Consensus 2 ay~t~~~~~~Y~~~a~vl~~SL~~~~~~---~~~~vl~~~~is~~~~~~L~~~----~--~~~~~v~~i~~~~~------ 66 (240)
T cd02537 2 AYVTLLTNDDYLPGALVLGYSLRKVGSS---YDLVVLVTPGVSEESREALEEV----G--WIVREVEPIDPPDS------ 66 (240)
T ss_pred EEEEEecChhHHHHHHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHHc----C--CEEEecCccCCcch------
Confidence 4555 3 446775 56999999999874 4556554 56888877665321 1 33444433221000
Q ss_pred hhccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeecccc
Q 006506 423 HMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 502 (643)
Q Consensus 423 ~l~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~ 502 (643)
. ..+ ....+..+|.||+++++. +++||||||+|+||.+||++||++ +..+||+.|+.
T Consensus 67 -------~-------~~~-----~~~~~~~~~~kl~~~~l~-~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~ 123 (240)
T cd02537 67 -------A-------NLL-----KRPRFKDTYTKLRLWNLT-EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCG 123 (240)
T ss_pred -------h-------hhc-----cchHHHHHhHHHHhcccc-ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccC
Confidence 0 000 123456789999999975 699999999999999999999987 67788888763
Q ss_pred cchhhhhhhhccCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHcc----CCccccccccccchhhhccCc--eE
Q 006506 503 VSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS----MGEESKEAVALRGSLLTFQDL--VY 576 (643)
Q Consensus 503 ~~~~~~~~yl~~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~----~DQDlLN~GtLP~~nl~F~g~--i~ 576 (643)
. ..|||||||+||+.. ++.+++++++.+.. .||++|| .+|+++ +.
T Consensus 124 ~-----------------~~~fNsGv~l~~~~~----~~~~~~~~~~~~~~~~~~~DQdiLN--------~~~~~~~~~~ 174 (240)
T cd02537 124 W-----------------PDLFNSGVFVLKPSE----ETFNDLLDALQDTPSFDGGDQGLLN--------SYFSDRGIWK 174 (240)
T ss_pred c-----------------cccccceEEEEcCCH----HHHHHHHHHHhccCCCCCCCHHHHH--------HHHcCCCCEe
Confidence 1 248999999999964 45666666766543 3999995 689999 99
Q ss_pred EeCCcccccCCCCCCCCC-HhhhcCCeEEEccCCCCCcccCCc---------cchHHHHHHHHh
Q 006506 577 ALDGVWALSGLGHDYGLN-IEAIKKAAVLHYNGNMKPWLELGI---------PRYKKFWKKFLN 630 (643)
Q Consensus 577 ~Ld~~WN~~~lg~d~~i~-~~~i~~p~IIHY~G~~KPW~~~~~---------~~y~~lW~kY~~ 630 (643)
.||.+||++...+..... ....++|+||||+|+.|||...+. ......||+.+.
T Consensus 175 ~l~~~yN~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~w~~~~~ 238 (240)
T cd02537 175 RLPFTYNALKPLRYLHPEALWFGDEIKVVHFIGGDKPWSWWRDPETKEKDDYNELHQWWWDIYD 238 (240)
T ss_pred ECCcceeeehhhhccCchhhcccCCcEEEEEeCCCCCCCCCcCCCcccccchHHHHHHHHHHHh
Confidence 999999997432221111 123568999999999999986643 245677877653
No 20
>PLN00176 galactinol synthase
Probab=99.90 E-value=2.2e-23 Score=221.11 Aligned_cols=237 Identities=17% Similarity=0.198 Sum_probs=148.8
Q ss_pred ceEEEE--E-eCCchhhH-HHHHHHHHhcCCCCCeEEE-EEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhH
Q 006506 345 LHHYVI--F-STNVLASS-VVINSTVLCARESKNQVFH-VLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKA 419 (643)
Q Consensus 345 ~iHIv~--~-sDNvLaas-VvInSil~N~~~p~~i~FH-IItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~~~ 419 (643)
..-+|. . +|+|+.++ |+.+|+..+.. ...++ ++|++++.+..+.+- .. ++ .|++++.+. .
T Consensus 22 ~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s---~~~lVvlVt~dVp~e~r~~L~---~~-g~--~V~~V~~i~---~--- 86 (333)
T PLN00176 22 KRAYVTFLAGNGDYVKGVVGLAKGLRKVKS---AYPLVVAVLPDVPEEHRRILV---SQ-GC--IVREIEPVY---P--- 86 (333)
T ss_pred ceEEEEEEecCcchHHHHHHHHHHHHHhCC---CCCEEEEECCCCCHHHHHHHH---Hc-CC--EEEEecccC---C---
Confidence 344555 2 45687655 89999877643 23333 356788876654442 11 23 334443321 0
Q ss_pred HHHhhccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeec
Q 006506 420 ILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQ 499 (643)
Q Consensus 420 ~l~~l~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVe 499 (643)
++. .. . ..++.| ..+|.||.|+++. +++||||||+|+||.++|++||+++ ...+|||.
T Consensus 87 -------~~~-------~~-~--~~~~~~--~i~~tKl~iw~l~-~ydkvlyLDaD~lv~~nid~Lf~~~--~~~~aAV~ 144 (333)
T PLN00176 87 -------PEN-------QT-Q--FAMAYY--VINYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLFDLP--DGYFYAVM 144 (333)
T ss_pred -------ccc-------cc-c--cccchh--hhhhhhhhhcccc-ccceEEEecCCEEeecChHHHhcCC--CcceEEEe
Confidence 000 00 0 001111 3467799999976 6899999999999999999999884 34689999
Q ss_pred ccccchh--hhhhh-----------h---ccCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHcc----CCcccc
Q 006506 500 SCSVSLG--QLKSY-----------L---GENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS----MGEESK 559 (643)
Q Consensus 500 Dc~~~~~--~~~~y-----------l---~~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~----~DQDlL 559 (643)
||..... ....| + ...+. +...||||||||||++.|+.+++.+ +++... .|||+|
T Consensus 145 dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g~-~~~~yFNSGVlvinps~~~~~~ll~----~l~~~~~~~f~DQD~L 219 (333)
T PLN00176 145 DCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGP-PPPLYFNAGMFVFEPSLSTYEDLLE----TLKITPPTPFAEQDFL 219 (333)
T ss_pred cccccccccccccccccccccchhhccchhhccC-CCCCeEEeEEEEEEcCHHHHHHHHH----HHHhcCCCCCCCHHHH
Confidence 9975311 00001 0 01111 2357999999999999999877765 444322 399999
Q ss_pred ccccccchhhhccCceEEeCCcccccC-CCCCCCCCHhhhcCCeEEEccC-CCCCcccCCc---------cchHHHHHHH
Q 006506 560 EAVALRGSLLTFQDLVYALDGVWALSG-LGHDYGLNIEAIKKAAVLHYNG-NMKPWLELGI---------PRYKKFWKKF 628 (643)
Q Consensus 560 N~GtLP~~nl~F~g~i~~Ld~~WN~~~-lg~d~~i~~~~i~~p~IIHY~G-~~KPW~~~~~---------~~y~~lW~kY 628 (643)
| .+|.++|.+||.+||++. ..+... ..-..++++||||+| ..|||...+. ...-+.||..
T Consensus 220 N--------~~F~~~~~~Lp~~YN~~~~~~~~~~-~~~~~~~vkIIHY~~~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~ 290 (333)
T PLN00176 220 N--------MFFRDIYKPIPPVYNLVLAMLWRHP-ENVELDKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDI 290 (333)
T ss_pred H--------HHHcCcEEECCchhcCchhhhhhCh-hhcccCCcEEEEeeCCCCCCCCCCCcccCCChHHHHHHHHHHHHH
Confidence 5 799999999999999873 112111 011246799999996 5799986542 1335678877
Q ss_pred HhhC
Q 006506 629 LNQE 632 (643)
Q Consensus 629 ~~~s 632 (643)
++.+
T Consensus 291 ~~~~ 294 (333)
T PLN00176 291 YNDE 294 (333)
T ss_pred hccc
Confidence 6644
No 21
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.71 E-value=1.9e-17 Score=172.40 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=105.4
Q ss_pred HHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeecccccchhhhhhhhccCCCCCCCCccccceEEec
Q 006506 453 SHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGLNIVD 532 (643)
Q Consensus 453 ~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~~~~~~~~~yl~~~~~~~~~cyfNSGVlLIN 532 (643)
+|.||.++++ .+++||||||+|+||.++|++||+++... .+||+. .. .||||||||||
T Consensus 80 ~~tKl~~~~l-~~y~kvlyLDaD~l~~~~ideLf~~~~~~-~~Aap~-~~-------------------~~FNSGvmvi~ 137 (278)
T cd06914 80 SLTKLRAFNQ-TEYDRIIYFDSDSIIRHPMDELFFLPNYI-KFAAPR-AY-------------------WKFASHLMVIK 137 (278)
T ss_pred HHHHHHhccc-cceeeEEEecCChhhhcChHHHhcCCccc-ceeeec-Cc-------------------ceecceeEEEe
Confidence 4999999999 68999999999999999999999988333 355543 10 18999999999
Q ss_pred hHHHHHhhHHHHHHHHHHHc--cCCccccccccccchhhhccCc-------eEEeCCc-ccccCCCCCCC----------
Q 006506 533 LARWRELDLTKTYQRLVREV--SMGEESKEAVALRGSLLTFQDL-------VYALDGV-WALSGLGHDYG---------- 592 (643)
Q Consensus 533 L~kWRk~nitek~~~~l~~~--~~DQDlLN~GtLP~~nl~F~g~-------i~~Ld~~-WN~~~lg~d~~---------- 592 (643)
++.|+.+++++++.++.... ..|||++| .+|.|+ +..||.+ ||++..-+...
T Consensus 138 ps~~~~~~l~~~~~~~~~~~~~~~DQdiLN--------~~~~~~~~~~~~~~~~Lp~~~y~llt~~~r~~~~~~~l~~~~ 209 (278)
T cd06914 138 PSKEAFKELMTEILPAYLNKKNEYDMDLIN--------EEFYNSKQLFKPSVLVLPHRQYGLLTGEFREKLHKSFLSNAQ 209 (278)
T ss_pred CCHHHHHHHHHHHHHhcccCCCCCChHHHH--------HHHhCCccccCcceEEcCccccccCChhhcccCHHHhhcccc
Confidence 99999999999999876542 24999996 689999 9999997 99874211110
Q ss_pred -----CC-HhhhcCCeEEEccCC--CCCcccC
Q 006506 593 -----LN-IEAIKKAAVLHYNGN--MKPWLEL 616 (643)
Q Consensus 593 -----i~-~~~i~~p~IIHY~G~--~KPW~~~ 616 (643)
.+ .+..+++++|||++. .|||...
T Consensus 210 ~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~~~ 241 (278)
T cd06914 210 HLYEKWDPDDVFKESKVIHFSDSPLPKPWNYN 241 (278)
T ss_pred ccccccCHHHHHhhCeEEEecCCCCCCCcCCc
Confidence 01 134578999999975 6999875
No 22
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=9e-11 Score=138.42 Aligned_cols=245 Identities=18% Similarity=0.245 Sum_probs=166.7
Q ss_pred CCCCceEEEE-EeCC-chhhH-HHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHH-hccCCCceEEEEEccccccccc
Q 006506 341 SDPSLHHYVI-FSTN-VLASS-VVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFF-RNTFKEATVQVLNIEQLNLESH 416 (643)
Q Consensus 341 ~D~~~iHIv~-~sDN-vLaas-VvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~-~n~~~~a~I~vini~~f~~~~~ 416 (643)
.|.+.|||+. +|-. |=+-. +++.|+++|++.| +.|.++-.-++..-.+..=. .+.+ +-.+++++ |+|=.
T Consensus 1177 ~~~~vINIFSvASGHLYERflrIMm~SvlknTktp--VKFWfLkNyLSPtFKe~iP~mA~eY-nFeyElv~---YkWPr- 1249 (1470)
T KOG1879|consen 1177 KDKEVINIFSVASGHLYERFLRIMMLSVLKNTKTP--VKFWFLKNYLSPTFKESIPHMAKEY-NFEYELVQ---YKWPR- 1249 (1470)
T ss_pred CccceEEEEeeccccHHHHHHHHHHHHHHhCCCCc--eeEEeehhhcChHHHHHHHHHHHHh-CceEEEEE---ecCch-
Confidence 3455899998 4554 55555 8999999999986 99999998776543333211 1222 33444443 34310
Q ss_pred hhHHHHhhccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhc-cCCeEEEEecceeEeCCchHHHcccCCCCee
Q 006506 417 DKAILIHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVN 495 (643)
Q Consensus 417 ~~~~l~~l~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP-~ldKVLYLD~DvVV~~DLseLw~iDL~gkvi 495 (643)
| .+. ...+.|. +..|==||+.-||| +++||||.|+|-||..||.||.++||+|.+.
T Consensus 1250 --------W--------Lhq---Q~EKQRi----iWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~dfdl~GaPy 1306 (1470)
T KOG1879|consen 1250 --------W--------LHQ---QTEKQRI----IWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMDFDLGGAPY 1306 (1470)
T ss_pred --------h--------hhh---hhhhhhh----hhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHhcccCCCcc
Confidence 0 010 0011221 33444478888899 9999999999999999999999999999999
Q ss_pred eeecccccchh--hh---h-hhhccCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHHccC--------Ccccccc
Q 006506 496 GAVQSCSVSLG--QL---K-SYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM--------GEESKEA 561 (643)
Q Consensus 496 aAVeDc~~~~~--~~---~-~yl~~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~~~~--------DQDlLN~ 561 (643)
|-++.|..+.. .| + -|... .+ ....|.-|...|+||++.|+-.-..++.-..|.... |||+-|
T Consensus 1307 gYtPfCdsR~EMDGyRFWK~GYW~~-hL-~grkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSLsNLDQDLPN- 1383 (1470)
T KOG1879|consen 1307 GYTPFCDSRREMDGYRFWKQGYWKK-HL-RGRKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSLSNLDQDLPN- 1383 (1470)
T ss_pred ccCccccccccccchhHHhhhHHHH-Hh-ccCccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchhhhccccccc-
Confidence 99999976421 11 1 12111 11 235699999999999999998888888766666432 999987
Q ss_pred ccccchhhhccCceEEeCCcccccCCCCCCCCCHhhhcCCeEEEccCCCCCcccCC----ccchHHHHHHHHh
Q 006506 562 VALRGSLLTFQDLVYALDGVWALSGLGHDYGLNIEAIKKAAVLHYNGNMKPWLELG----IPRYKKFWKKFLN 630 (643)
Q Consensus 562 GtLP~~nl~F~g~i~~Ld~~WN~~~lg~d~~i~~~~i~~p~IIHY~G~~KPW~~~~----~~~y~~lW~kY~~ 630 (643)
|+...-.|+.||..|-++.. ..+.+..+++++|--+.+ ||.+.. ....-..|..|-.
T Consensus 1384 ------nm~hqVpIkSLPqeWLWCET----WC~d~skkkAktIDLCnN--P~TKEpKL~~A~Riv~EW~dyD~ 1444 (1470)
T KOG1879|consen 1384 ------NMQHQVPIKSLPQEWLWCET----WCDDESKKKAKTIDLCNN--PLTKEPKLDAARRIVSEWTDYDA 1444 (1470)
T ss_pred ------cceeecccccCCcchhhhhh----hcCchhhhhchhhhhhcC--ccccchhhHHHhhhcCCCcccch
Confidence 67888899999999988643 223456678899998875 887651 2344455665544
No 23
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.39 E-value=7.5e-05 Score=78.83 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=32.1
Q ss_pred HHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeeccc
Q 006506 454 HLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSC 501 (643)
Q Consensus 454 y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc 501 (643)
+.++.+-+.. ++|||+|||+|.||.+++++||..+ -+-.+|.+|.
T Consensus 157 ftKLrVfeqt-EyDRvifLDsDaivlknmDklFd~P--vyef~a~pD~ 201 (368)
T COG5597 157 FTKLRVFEQT-EYDRVIFLDSDAIVLKNMDKLFDYP--VYEFAAAPDV 201 (368)
T ss_pred hHHHHhhhhh-hhceEEEeccchHHhhhhHHHhcch--hhhhccCCch
Confidence 3444443333 6899999999999999999999866 2334554443
No 24
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=95.07 E-value=0.14 Score=50.75 Aligned_cols=147 Identities=13% Similarity=0.019 Sum_probs=75.5
Q ss_pred hHhHHHHh-hhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeecccccchhhhhhhhccCCCCCCCCccccce
Q 006506 450 SVFSHLHY-LLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVSLGQLKSYLGENSYDKNSCAWMSGL 528 (643)
Q Consensus 450 S~l~y~Rf-~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~~~~~~~~~yl~~~~~~~~~cyfNSGV 528 (643)
..+...|. ++-+++..---|+|+|+|+|..+|..++++ -.+.-+.+..|+.... ........+|+|+
T Consensus 49 ~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~--~~~~Di~~~~d~~~~~----------~~~~~~~~~n~G~ 116 (212)
T PF03407_consen 49 QKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFE--NPDADILFSSDGWDGT----------NSDRNGNLVNTGF 116 (212)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhhc--cCCCceEEecCCCccc----------chhhcCCccccce
Confidence 34555665 455666533469999999999999999992 1333344444554310 0111223469999
Q ss_pred EEechHHHHHhhHHHHHHHHHHHccC--CccccccccccchhhhccCceEEeCCcccccCCCCCCC-CCHh-h--hcCCe
Q 006506 529 NIVDLARWRELDLTKTYQRLVREVSM--GEESKEAVALRGSLLTFQDLVYALDGVWALSGLGHDYG-LNIE-A--IKKAA 602 (643)
Q Consensus 529 lLINL~kWRk~nitek~~~~l~~~~~--DQDlLN~GtLP~~nl~F~g~i~~Ld~~WN~~~lg~d~~-i~~~-~--i~~p~ 602 (643)
+.+--..- -..+.+.....+.+... ||.++|.-......-.-.-++..||..--..|.+|-.. .... . ...|.
T Consensus 117 ~~~r~t~~-~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~~~~~p~ 195 (212)
T PF03407_consen 117 YYFRPTPR-TIAFLEDWLERMAESPGCWDQQAFNELLREQAARYGGLRVRFLPPSLFPNGHGYFCQSRDWAWVPTKNKPY 195 (212)
T ss_pred EEEecCHH-HHHHHHHHHHHHHhCCCcchHHHHHHHHHhcccCCcCcEEEEeCHHHeeccccceeecchhhhhccccccc
Confidence 99954431 11233333333333333 89988731000000001224556766544333222111 1111 1 35799
Q ss_pred EEEccCC
Q 006506 603 VLHYNGN 609 (643)
Q Consensus 603 IIHY~G~ 609 (643)
+||.++.
T Consensus 196 ~vH~n~~ 202 (212)
T PF03407_consen 196 IVHANCC 202 (212)
T ss_pred eEEEcCC
Confidence 9999863
No 25
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=89.17 E-value=1.8 Score=45.56 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=27.3
Q ss_pred hhhhhhccCCeEEEEecceeEeCCchHHHccc
Q 006506 458 LLPEIFQSLTKVVVLDDDVVVQKDLSALWDIN 489 (643)
Q Consensus 458 ~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iD 489 (643)
.+.-++-..+.||+||+|.|...|++.||+.+
T Consensus 83 ~lA~l~ssFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 83 WLALLFSSFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred hhhhhhCCcceEEEEcCCcccccCHHHHhcCc
Confidence 34445678899999999999999999999864
No 26
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=85.31 E-value=3.5 Score=46.07 Aligned_cols=79 Identities=11% Similarity=0.174 Sum_probs=42.4
Q ss_pred cccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCC--eeeeecccccchhhhhhhhccCCCCCCCCc
Q 006506 446 MQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGK--VNGAVQSCSVSLGQLKSYLGENSYDKNSCA 523 (643)
Q Consensus 446 ~~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gk--viaAVeDc~~~~~~~~~yl~~~~~~~~~cy 523 (643)
+.+++..-++|=.+-. +|+.+-|.|||+|.||..-- +++++..+ .+-.+.- +...+ -..++-.+
T Consensus 179 p~~WaKlpaLR~aM~~-~PeaEWiWWLDsDALImNms---felPlery~~~NlVihg-------~~~~l---~~~kdW~G 244 (429)
T PLN03182 179 AGFWAKLPLLRKLMLA-HPEVEWIWWMDSDALFTDMT---FEIPLEKYEGYNLVIHG-------WDELV---YDQKSWIG 244 (429)
T ss_pred CcchhHHHHHHHHHHH-CCCceEEEEecCCceeecCC---CCCCHhHcCCcCeeecc-------chhhh---eeccccCc
Confidence 3455555555444332 58999999999999998631 22333211 1111110 00000 01123348
Q ss_pred cccceEEechHHHHH
Q 006506 524 WMSGLNIVDLARWRE 538 (643)
Q Consensus 524 fNSGVlLINL~kWRk 538 (643)
.|+|+++|-.-.|--
T Consensus 245 LNtGsFLIRNcqWSl 259 (429)
T PLN03182 245 LNTGSFLIRNCQWSL 259 (429)
T ss_pred cceeeEEEEcCHHHH
Confidence 999999997666654
No 27
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=73.60 E-value=24 Score=39.98 Aligned_cols=119 Identities=14% Similarity=0.265 Sum_probs=63.4
Q ss_pred CCceEEEEEeCCch-hhHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHH
Q 006506 343 PSLHHYVIFSTNVL-ASSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAIL 421 (643)
Q Consensus 343 ~~~iHIv~~sDNvL-aasVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~~~~l 421 (643)
...+.|+++.-|-. +.-=+|.|++++....+.+.+.|--|+.+.+..+.. ..+.+ .+..+.-.++ ..+.
T Consensus 92 ~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi---~~y~~-~v~~i~~~~~--~~i~---- 161 (434)
T PF03071_consen 92 EPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVI---KSYGD-QVTYIQHPDF--SPIT---- 161 (434)
T ss_dssp -----EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHH---HGGGG-GSEEEE-S----S-------
T ss_pred CCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHH---HHhhh-hheeeecCCc--CCce----
Confidence 44567777777733 344689999998765556767777777655544432 22322 1222221111 1000
Q ss_pred HhhccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhc--cCCeEEEEecceeEeCCchHHHc
Q 006506 422 IHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ--SLTKVVVLDDDVVVQKDLSALWD 487 (643)
Q Consensus 422 ~~l~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP--~ldKVLYLD~DvVV~~DLseLw~ 487 (643)
..|....-..|..++.|+|.-|-.+|. .+++||.|.+|+.|--|.-+.|+
T Consensus 162 ----------------~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~ 213 (434)
T PF03071_consen 162 ----------------IPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFS 213 (434)
T ss_dssp ------------------TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHH
T ss_pred ----------------eCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHH
Confidence 001100012577789999999999995 58999999999999999977775
No 28
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=62.72 E-value=21 Score=36.11 Aligned_cols=114 Identities=12% Similarity=0.119 Sum_probs=78.1
Q ss_pred ccccccchhHHHHHhHHHHHHHHhhhhhhcCCC-CChHHHHHHHHHHHHHHHHhhc--ccCCCCCCccHHHHHHHHHHHH
Q 006506 187 REHREEMKDTMVKKLKDQLFVARAYYPSIAKLP-SQDKLTRALRQNIQEVERVLSE--SATDVDLPPGIEKKIQRMEAAI 263 (643)
Q Consensus 187 ~~~~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~-~~~~~~~el~~~~~e~~~~l~~--~~~d~~l~~~~~~~~~~m~~~~ 263 (643)
.|..+.|.|..++.|.++|.-|+.=++.+.... .-.+-..++...+.+++.-... ...+.||-+.+..+....+..+
T Consensus 21 ~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~ 100 (221)
T PF04012_consen 21 AEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQA 100 (221)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 355667889999999999998887543222111 1122334455555555533333 2345568888888888888888
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHH
Q 006506 264 TKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAF 300 (643)
Q Consensus 264 ~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~ 300 (643)
...+...........+|+.-+..+|.++...+.+..-
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~ 137 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREE 137 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888899999999999998876555443
No 29
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=60.44 E-value=61 Score=35.56 Aligned_cols=115 Identities=16% Similarity=0.243 Sum_probs=69.0
Q ss_pred eEEEEEeCCchh-hHHHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHHhh
Q 006506 346 HHYVIFSTNVLA-SSVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHM 424 (643)
Q Consensus 346 iHIv~~sDNvLa-asVvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~~~~l~~l 424 (643)
+.|++++=|-.. ..-+|.|+++..+.-+...++|..|+-..+..+.. ..+. ..+.++.-.++..
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v---~~~~-~~i~~i~~~~~~~----------- 66 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVA---KSFG-DGVTHIQHPPISI----------- 66 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHH---Hhhc-cccEEEEcccccc-----------
Confidence 457777777554 44689999997533356889999999765443322 1111 1122221111110
Q ss_pred ccccchhhccccCCCCCcccccccchHhHHHHhhhhhhhcc--CCeEEEEecceeEeCCchHHHc
Q 006506 425 FLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQS--LTKVVVLDDDVVVQKDLSALWD 487 (643)
Q Consensus 425 ~~~~efr~~f~~~~~p~~~~r~~ylS~l~y~Rf~IPeLLP~--ldKVLYLD~DvVV~~DLseLw~ 487 (643)
.+...+ .++ ..|.....|++.-+-.+|.. .++||+||+|+++.-|.-+.++
T Consensus 67 ----------~~~~~~-~~~-~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~ 119 (334)
T cd02514 67 ----------KNVNPP-HKF-QGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQ 119 (334)
T ss_pred ----------cccCcc-ccc-chhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHH
Confidence 000000 011 24567788888888888864 8999999999999999665554
No 30
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=59.16 E-value=13 Score=27.89 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 006506 32 LVILSMLVPLAFLLGL 47 (643)
Q Consensus 32 ~~~~~~~~~~~~~~~~ 47 (643)
-+.|+++||-+||+.|
T Consensus 10 At~Lfi~iPt~FLlil 25 (35)
T PRK04989 10 ASLLFVLVPTVFLIIL 25 (35)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3458899999999998
No 31
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=58.72 E-value=36 Score=31.44 Aligned_cols=75 Identities=23% Similarity=0.225 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCc-chHHHHHHHHHHHHhHHHHHHHhhHH
Q 006506 222 DKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVD-CSNVDKKFRQILDMTNDEANFHMKQS 298 (643)
Q Consensus 222 ~~~~~el~~~~~e~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~~~~-~~~~~~klr~~~~~~E~~~~~~~~q~ 298 (643)
.++..||+.=+.++|.+|.++...++ .++.+.=...+..+.++|.-.-+ -..+.++-|++++.+|+-++.+-=|+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~--~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~ 86 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAG--DEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQG 86 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh--hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 67888999999999999999776543 23333333344455555543322 26788999999999999999766554
No 32
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=58.54 E-value=32 Score=35.12 Aligned_cols=113 Identities=11% Similarity=0.086 Sum_probs=73.0
Q ss_pred ccccccchhHHHHHhHHHHHHHHhhhhhh-cCCCCChHHHHHHHHHHHHHHHHhhcc--cCCCCCCccHHHHHHHHHHHH
Q 006506 187 REHREEMKDTMVKKLKDQLFVARAYYPSI-AKLPSQDKLTRALRQNIQEVERVLSES--ATDVDLPPGIEKKIQRMEAAI 263 (643)
Q Consensus 187 ~~~~~~~~d~~~~~~~dq~~~a~~y~~~~-a~~~~~~~~~~el~~~~~e~~~~l~~~--~~d~~l~~~~~~~~~~m~~~~ 263 (643)
.|..+.|.|..++.|+|+|.-||.=++.+ |..+.-.+-..++..++.+++.--..| ..+.||-+.+......-+..+
T Consensus 22 ~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~ 101 (219)
T TIGR02977 22 AEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELA 101 (219)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34556688999999999999888754221 221222333456666666666332222 234558787766666666666
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHH
Q 006506 264 TKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSA 299 (643)
Q Consensus 264 ~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~ 299 (643)
...+.........+.+|++-+..+|.++...+....
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666667778899999999988886655544
No 33
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=56.81 E-value=38 Score=29.80 Aligned_cols=69 Identities=12% Similarity=0.214 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhhcccCC--CCCCccHHHHHHHHHHHHHHhhcCC--CcchHHHHHHHHHHHHhHHHHHHHh
Q 006506 226 RALRQNIQEVERVLSESATD--VDLPPGIEKKIQRMEAAITKAKSVP--VDCSNVDKKFRQILDMTNDEANFHM 295 (643)
Q Consensus 226 ~el~~~~~e~~~~l~~~~~d--~~l~~~~~~~~~~m~~~~~~ak~~~--~~~~~~~~klr~~~~~~E~~~~~~~ 295 (643)
+++...|+--|+++|.||.. .++.+.+.+.|+..+.-+.+|++.. .| ..+...=.+.|+..|-+++.++
T Consensus 6 kQve~aVetAqkmvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~at~lD-~~Fl~~~~~~L~~~eHQL~Eak 78 (79)
T PF10819_consen 6 KQVEMAVETAQKMVGQATMSMDPDQLEHATQAVEDAREQLSQAKSHATGLD-EPFLQQSEQLLDDCEHQLDEAK 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHHHhc
Confidence 57778899999999998865 4467788888999888888888776 33 2444556677888888877543
No 34
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=56.68 E-value=15 Score=27.15 Aligned_cols=17 Identities=47% Similarity=0.678 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 006506 31 FLVILSMLVPLAFLLGL 47 (643)
Q Consensus 31 ~~~~~~~~~~~~~~~~~ 47 (643)
.-+.|++++|-+||+.|
T Consensus 9 iAt~Lfi~iPt~FLiil 25 (33)
T TIGR03038 9 IATLLFILVPTVFLLIL 25 (33)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34558899999999998
No 35
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=56.52 E-value=1.4e+02 Score=31.98 Aligned_cols=183 Identities=11% Similarity=0.062 Sum_probs=92.8
Q ss_pred EeCCchhhH-HHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHHhhccccc
Q 006506 351 FSTNVLASS-VVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVE 429 (643)
Q Consensus 351 ~sDNvLaas-VvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~~~~l~~l~~~~e 429 (643)
+.-.|..-. --+.|.=++=-...+++|||+||.-..-. . .+--++..+.|+.+.+..
T Consensus 42 atGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p---~--v~lg~~r~~~V~~v~~~~----------------- 99 (271)
T cd02515 42 AVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAVP---E--VELGPGRRLTVLKIAEES----------------- 99 (271)
T ss_pred EeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccCc---c--cccCCCceeEEEEecccc-----------------
Confidence 455565422 35666666655566799999999753211 0 011124566666653211
Q ss_pred hhhccccCCCCCcccccccchHh--HHHHhhhhh-hhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeeccccc---
Q 006506 430 YRVSLLSVDGPSIHSKMQYISVF--SHLHYLLPE-IFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSV--- 503 (643)
Q Consensus 430 fr~~f~~~~~p~~~~r~~ylS~l--~y~Rf~IPe-LLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~~--- 503 (643)
+..+.|+. ..+.=.+.+ ++.++|-+.++|+|+++++++.. ++ | |..+|...--.-
T Consensus 100 ---------------~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~--E~-L-g~lva~lHp~~y~~~ 160 (271)
T cd02515 100 ---------------RWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFGV--ET-L-GDSVAQLHPWWYGKP 160 (271)
T ss_pred ---------------CCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCCH--HH-h-hhhheecChhhhcCC
Confidence 01111211 111112333 34589999999999999999862 11 2 234555432110
Q ss_pred -------chhhhhhhhccCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHH-c-c------CCccccccccccchh
Q 006506 504 -------SLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVRE-V-S------MGEESKEAVALRGSL 568 (643)
Q Consensus 504 -------~~~~~~~yl~~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~-~-~------~DQDlLN~GtLP~~n 568 (643)
+..+-..|+ .++.+.-|+.+|++==-.++..+ +++.|..-+.. . + .|..=||-
T Consensus 161 ~~~fpYERrp~S~AyI---p~~eGdfYy~Ga~~GG~~~~vl~--l~~~c~~~i~~D~~n~I~A~wHDESHLNk------- 228 (271)
T cd02515 161 RKQFPYERRPSSAAYI---PEGEGDFYYHGAVFGGSVEEVYR--LTRACHEGILADKANGIEARWHDESHLNK------- 228 (271)
T ss_pred CCCCCCcCCCCccccc---cCCCCCeEEeeeecCccHHHHHH--HHHHHHHHHHHHHhCCceEEeecHhHhHH-------
Confidence 000011122 23455667777776322222222 45555544433 1 1 26677763
Q ss_pred hhccCc-eEEeCCcccccC
Q 006506 569 LTFQDL-VYALDGVWALSG 586 (643)
Q Consensus 569 l~F~g~-i~~Ld~~WN~~~ 586 (643)
..+.++ ++.|++.|.+..
T Consensus 229 Yf~~~Kp~KiLSPeY~w~e 247 (271)
T cd02515 229 YFLLHKPTKVLSPEYLWDD 247 (271)
T ss_pred HHhhCCCCeecChhhcCCc
Confidence 333444 889999988763
No 36
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=55.63 E-value=1.2e+02 Score=33.54 Aligned_cols=183 Identities=11% Similarity=0.128 Sum_probs=87.2
Q ss_pred EeCCchhhH-HHHHHHHHhcCCCCCeEEEEEeCCCCHHHHHHHHHhccCCCceEEEEEccccccccchhHHHHhhccccc
Q 006506 351 FSTNVLASS-VVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIHMFLPVE 429 (643)
Q Consensus 351 ~sDNvLaas-VvInSil~N~~~p~~i~FHIItD~in~~~mk~wF~~n~~~~a~I~vini~~f~~~~~~~~~l~~l~~~~e 429 (643)
+.-.|..-. --+.|.=++=-...+++|||+||....-. . . ..-++.++.|+.+....
T Consensus 107 A~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP--~-i--~l~~~r~~~V~~v~~~~----------------- 164 (337)
T PF03414_consen 107 ATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVP--R-I--ELGPGRRLKVFEVQEEK----------------- 164 (337)
T ss_dssp E-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS-----------TTEEEEEEE-SGGS-----------------
T ss_pred ecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCC--c-c--ccCCCceeEEEEecccC-----------------
Confidence 455565533 46677777766667899999999863211 0 0 11124566666654311
Q ss_pred hhhccccCCCCCcccccccchH---hHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHcccCCCCeeeeecccccc--
Q 006506 430 YRVSLLSVDGPSIHSKMQYISV---FSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSVS-- 504 (643)
Q Consensus 430 fr~~f~~~~~p~~~~r~~ylS~---l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~iDL~gkviaAVeDc~~~-- 504 (643)
+..++|+ -+..++..-.++.++|-+.++|+|+++++++.. + .| |..+|...--.-.
T Consensus 165 ---------------~Wqd~sm~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~F~~~vGv--E-~L-g~lva~LHp~~y~~~ 225 (337)
T PF03414_consen 165 ---------------RWQDISMMRMEMISEHIEQHIQHEVDYLFCMDVDMVFQDHVGV--E-IL-GDLVATLHPWFYFKP 225 (337)
T ss_dssp ---------------SHHHHHHHHHHHHHHHHHHCHHHH-SEEEEEESSEEE-S-B-G--G-G--SSEEEEESTTTTTST
T ss_pred ---------------CCccchhHHHHHHHHHHHHHHhhcCCEEEEEecceEEecccCH--H-HH-HHHHHHhCHHHHCCC
Confidence 1112222 112222334456789999999999999998864 1 12 5667766532110
Q ss_pred ---h-----hhhhhhhccCCCCCCCCccccceEEechHHHHHhhHHHHHHHHHHH-c-c------CCccccccccccchh
Q 006506 505 ---L-----GQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVRE-V-S------MGEESKEAVALRGSL 568 (643)
Q Consensus 505 ---~-----~~~~~yl~~~~~~~~~cyfNSGVlLINL~kWRk~nitek~~~~l~~-~-~------~DQDlLN~GtLP~~n 568 (643)
+ .+-..|+ .++.+..|+.+|++==-..+-. ++++.|+.-+.. . + .|..=||- .
T Consensus 226 ~~~FpYERrp~S~AyI---p~~eGDfYY~ga~fGGt~~~vl--~Lt~~c~~~i~~D~~n~I~A~WhDESHLNK------Y 294 (337)
T PF03414_consen 226 RESFPYERRPKSQAYI---PYGEGDFYYHGAFFGGTVEEVL--RLTEACHQGIMQDKANGIEALWHDESHLNK------Y 294 (337)
T ss_dssp GGGS--B-STTSTTB-----TT--S--EECCEEEECHHHHH--HHHHHHHHHHHHHHHTT---TTCHHHHHHH------H
T ss_pred hhhCccccCccccccc---cCCCCCeEEeceecCCcHHHHH--HHHHHHHHHHHhhhhcCceEeccchhhhHH------H
Confidence 0 0001122 2345667888887653333322 255555554432 1 1 15555652 2
Q ss_pred hhccCceEEeCCccccc
Q 006506 569 LTFQDLVYALDGVWALS 585 (643)
Q Consensus 569 l~F~g~i~~Ld~~WN~~ 585 (643)
+..+..++.|++.|.+-
T Consensus 295 fl~~KPtKvLSPEY~Wd 311 (337)
T PF03414_consen 295 FLYHKPTKVLSPEYCWD 311 (337)
T ss_dssp HHHS--SEEE-GGGSBS
T ss_pred HhhCCCceecCHHHccC
Confidence 33355578899988874
No 37
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=54.29 E-value=6.5 Score=43.68 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=22.5
Q ss_pred hHHHHhhhhhhhccCCeEEEEecceeEeCCchHHHc
Q 006506 452 FSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWD 487 (643)
Q Consensus 452 l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DLseLw~ 487 (643)
.+..|+.+= .. |. =||||.||||.+++++|=+
T Consensus 228 Sdl~RLA~L--yK-YG-GvYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 228 SDLSRLALL--YK-YG-GVYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred HHHHHHHHH--HH-hC-CEEeeccEEEecccccccc
Confidence 345676543 22 22 2899999999999999854
No 38
>CHL00080 psbM photosystem II protein M
Probab=45.58 E-value=25 Score=26.22 Aligned_cols=15 Identities=53% Similarity=0.718 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhh
Q 006506 33 VILSMLVPLAFLLGL 47 (643)
Q Consensus 33 ~~~~~~~~~~~~~~~ 47 (643)
..|+++||-+||+.|
T Consensus 11 t~LFi~iPt~FLlil 25 (34)
T CHL00080 11 TALFILVPTAFLLII 25 (34)
T ss_pred HHHHHHHHHHHHHHh
Confidence 447888999999998
No 39
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=44.90 E-value=21 Score=28.47 Aligned_cols=15 Identities=47% Similarity=0.744 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhh
Q 006506 33 VILSMLVPLAFLLGL 47 (643)
Q Consensus 33 ~~~~~~~~~~~~~~~ 47 (643)
..|+++||-+|||.|
T Consensus 11 taLFi~iPT~FLlil 25 (50)
T PRK14094 11 SLLFVGVPTIFLIGL 25 (50)
T ss_pred HHHHHHHHHHHhhhe
Confidence 458889999999999
No 40
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=42.75 E-value=25 Score=25.73 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 006506 32 LVILSMLVPLAFLLGL 47 (643)
Q Consensus 32 ~~~~~~~~~~~~~~~~ 47 (643)
-+.|++++|-+||+.+
T Consensus 10 AtaLfi~iPt~FLiil 25 (31)
T PF05151_consen 10 ATALFILIPTAFLIIL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhe
Confidence 3458889999999987
No 41
>PRK10698 phage shock protein PspA; Provisional
Probab=42.28 E-value=82 Score=32.49 Aligned_cols=113 Identities=10% Similarity=0.084 Sum_probs=73.3
Q ss_pred cccccchhHHHHHhHHHHHHHHhhhhh-hcCCCCChHHHHHHHHHHHHHHHHhhc--ccCCCCCCccHHHHHHHHHHHHH
Q 006506 188 EHREEMKDTMVKKLKDQLFVARAYYPS-IAKLPSQDKLTRALRQNIQEVERVLSE--SATDVDLPPGIEKKIQRMEAAIT 264 (643)
Q Consensus 188 ~~~~~~~d~~~~~~~dq~~~a~~y~~~-~a~~~~~~~~~~el~~~~~e~~~~l~~--~~~d~~l~~~~~~~~~~m~~~~~ 264 (643)
|..+.|.+.+++.|+|++.-+|.=++. +|.-+.-.+-..++..++.++++--.- ...+.||-+.+...-+.....+.
T Consensus 23 EDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 23 EDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 445568899999999999888764322 222222233345556666666532222 23455688886665556666666
Q ss_pred HhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHH
Q 006506 265 KAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAF 300 (643)
Q Consensus 265 ~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~ 300 (643)
..+.........+.+|++-+..++.++...+.+...
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677777899999999999988876654443
No 42
>PRK10132 hypothetical protein; Provisional
Probab=41.13 E-value=1.2e+02 Score=28.02 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHH
Q 006506 222 DKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQS 298 (643)
Q Consensus 222 ~~~~~el~~~~~e~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~ 298 (643)
++|..||+.=+.++|.+|.++..++. ..+.+.=.+.+..+..||+-..+-..+..+.|...+.+++-++.+-=|+
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~~~~--~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~s 89 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGSDAK--GEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCS 89 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 68889999999999999987665432 2334444455667777776555555566778999999999998655554
No 43
>COG4037 Predicted membrane protein [Function unknown]
Probab=39.12 E-value=34 Score=32.94 Aligned_cols=44 Identities=34% Similarity=0.477 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCC---CCCCCCCCccccchhhhhhccc
Q 006506 34 ILSMLVPLAFLLGLHNGFHSPNPN---PNGYVPVHKTSIVSDLKIYDKY 79 (643)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 79 (643)
+++++..|++|+|||-+ |+-+++ ++-.|..|-.+ -.-+-.|||+
T Consensus 23 vf~~~Lal~~l~Gll~p-h~lnp~QLYPrP~Pq~Q~~~-kdPLAPYDRG 69 (163)
T COG4037 23 VFCLLLALLALLGLLCP-HSLNPEQLYPRPAPQVQMKA-KDPLAPYDRG 69 (163)
T ss_pred HHHHHHHHHHHHHhhCc-cccCHHHcCCCCCchhhhcc-CCCCCCccCC
Confidence 35566778899999654 665555 33233222211 1245689984
No 44
>PLN03181 glycosyltransferase; Provisional
Probab=38.12 E-value=34 Score=38.71 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=17.3
Q ss_pred hccCCeEEEEecceeEeCC
Q 006506 463 FQSLTKVVVLDDDVVVQKD 481 (643)
Q Consensus 463 LP~ldKVLYLD~DvVV~~D 481 (643)
+|+.+-|.|||.|+||..-
T Consensus 196 ~PeAEWfWWLDsDALIMNp 214 (453)
T PLN03181 196 HPEAEWIWWVDSDAVFTDM 214 (453)
T ss_pred CCCceEEEEecCCceeecC
Confidence 6899999999999999865
No 45
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=38.02 E-value=85 Score=32.65 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=75.9
Q ss_pred cccccchhHHHHHhHHHHHHHHhhhhhhcCCCCC-hHHHH---HHHHHHHHHHHHhhc--ccCCCCCCccHHHHHHHHHH
Q 006506 188 EHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQ-DKLTR---ALRQNIQEVERVLSE--SATDVDLPPGIEKKIQRMEA 261 (643)
Q Consensus 188 ~~~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~-~~~~~---el~~~~~e~~~~l~~--~~~d~~l~~~~~~~~~~m~~ 261 (643)
|..+.|.|..++-|+++|.-||-=+ |+...+ .+|-+ ++..++.++|.---. ...+.+|-+.+...+...+.
T Consensus 23 EDp~~~l~Q~ird~~~~l~~ar~~~---A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~ 99 (225)
T COG1842 23 EDPEKMLEQAIRDMESELAKARQAL---AQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLED 99 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4455688999999999999888754 554444 33433 444455555421111 23445688888888888888
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHH
Q 006506 262 AITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAF 300 (643)
Q Consensus 262 ~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~ 300 (643)
.+..-++..-.......+||..+..+|.++...+.+-.-
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 100 LAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777777788899999999999998865555443
No 46
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=35.50 E-value=29 Score=36.03 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=12.6
Q ss_pred ccCCeEEEEecceeEeCCchHH
Q 006506 464 QSLTKVVVLDDDVVVQKDLSAL 485 (643)
Q Consensus 464 P~ldKVLYLD~DvVV~~DLseL 485 (643)
|+.+-|+|||+|.+|..-=-+|
T Consensus 75 P~~~wv~~lD~Dali~n~~~~L 96 (239)
T PF05637_consen 75 PEAEWVWWLDSDALIMNPDFSL 96 (239)
T ss_dssp TT-SEEEEE-TTEEE-------
T ss_pred CCCCEEEEEcCCeEEEeccccc
Confidence 8899999999999998644444
No 47
>PRK10404 hypothetical protein; Provisional
Probab=35.31 E-value=1.6e+02 Score=26.99 Aligned_cols=78 Identities=17% Similarity=0.109 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhc-CCCcchHHHHHHHHHHHHhHHHHHHHhhH
Q 006506 219 PSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKS-VPVDCSNVDKKFRQILDMTNDEANFHMKQ 297 (643)
Q Consensus 219 ~~~~~~~~el~~~~~e~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~-~~~~~~~~~~klr~~~~~~E~~~~~~~~q 297 (643)
..++++..||+.=+.++|.+|.++..++ -..+.+.=...+..+..+|. +..--..+..+.|++.+.+++-++.+-=|
T Consensus 5 ~~~~~l~~dl~~L~~dle~Ll~~~~~~a--~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~ 82 (101)
T PRK10404 5 FGDTRIDDDLTLLSETLEEVLRSSGDPA--DQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQ 82 (101)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 4568899999999999999998876542 12222223334444555552 22122234566799999999999875554
Q ss_pred H
Q 006506 298 S 298 (643)
Q Consensus 298 ~ 298 (643)
+
T Consensus 83 a 83 (101)
T PRK10404 83 G 83 (101)
T ss_pred H
Confidence 4
No 48
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=34.13 E-value=44 Score=30.76 Aligned_cols=37 Identities=30% Similarity=0.303 Sum_probs=27.6
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHhh-ccCCCCC
Q 006506 18 GKRRWRSLVIGVLFLVILSMLVPLAFLLGL-HNGFHSP 54 (643)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 54 (643)
+-|.|.-||--||+.|.+|+|+-|+.=.-+ |+-|+|-
T Consensus 13 ~g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY 50 (102)
T PF15176_consen 13 GGRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASY 50 (102)
T ss_pred CCcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 368999999888888889998766654433 6777664
No 49
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=32.44 E-value=23 Score=31.51 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=27.7
Q ss_pred ccchHhHHHHhhhhhhhccCCeEEEEecceeEeCCc-hHHH
Q 006506 447 QYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDL-SALW 486 (643)
Q Consensus 447 ~ylS~l~y~Rf~IPeLLP~ldKVLYLD~DvVV~~DL-seLw 486 (643)
.+.....++|+.+=...-. ||+|.|+++.+++ +++-
T Consensus 61 ~~~~~sD~~R~~~L~~~GG----iY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 61 NYAHKSDLLRYLVLYKYGG----IYLDLDVICLRPLDDPWL 97 (103)
T ss_pred chHHHHHHHHHHHHHHcCc----EEEeCccccCcchhhhhh
Confidence 3455678899988665544 8999999999999 6553
No 50
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=32.27 E-value=63 Score=30.27 Aligned_cols=40 Identities=25% Similarity=0.615 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCccH----HHHHHHHHHHHHHhhcCC
Q 006506 227 ALRQNIQEVERVLSESATDVDLPPGI----EKKIQRMEAAITKAKSVP 270 (643)
Q Consensus 227 el~~~~~e~~~~l~~~~~d~~l~~~~----~~~~~~m~~~~~~ak~~~ 270 (643)
+|+.+|++++|+|... +||+.+ +..+++.+..+..+....
T Consensus 1 klK~riRdieRLL~r~----~Lp~~vR~~~Er~L~~L~~~l~~~~~~~ 44 (114)
T PF10153_consen 1 KLKKRIRDIERLLKRK----DLPADVRVEKERELEALKRELEEAERKE 44 (114)
T ss_pred CHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999766 688876 335666666666654433
No 51
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.48 E-value=3.5e+02 Score=34.80 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHHH----------HHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchHHHHHHH---HHHHHh
Q 006506 221 QDKLTRALRQNIQEVE----------RVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFR---QILDMT 287 (643)
Q Consensus 221 ~~~~~~el~~~~~e~~----------~~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~~~~~~~~~~klr---~~~~~~ 287 (643)
+-+.+++|.++|++.. +.+.+...+-+||-...+.-.-|++.-.++.+.. +...|..+.+ +...++
T Consensus 1469 s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~-nVd~IL~~T~~di~ra~~L 1547 (1758)
T KOG0994|consen 1469 SNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLP-NVDAILSRTKGDIARAENL 1547 (1758)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc-cHHHHHHhhhhhHHHHHHH
Confidence 3445566666666553 5555555666677666655444554444444433 4444444444 334455
Q ss_pred HHHHHHHhhHHHH
Q 006506 288 NDEANFHMKQSAF 300 (643)
Q Consensus 288 E~~~~~~~~q~~~ 300 (643)
+++++.+++.++-
T Consensus 1548 ~s~A~~a~~~A~~ 1560 (1758)
T KOG0994|consen 1548 QSEAERARSRAED 1560 (1758)
T ss_pred HHHHHHHHhHHHH
Confidence 5555554444443
No 52
>PRK10807 paraquat-inducible protein B; Provisional
Probab=29.93 E-value=1.6e+02 Score=34.52 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=26.1
Q ss_pred CCccHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHH
Q 006506 248 LPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAF 300 (643)
Q Consensus 248 l~~~~~~~~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~ 300 (643)
||.++.+.++.++.++..+.. -+..-..|+++++.+++-+++.+--..+
T Consensus 474 Lp~~L~~TL~~l~~~l~~~~~----~s~~~~~l~~tl~~l~~~~r~lr~l~~~ 522 (547)
T PRK10807 474 LPADMQKTLRELNRSMQGFQP----GSPAYNKMVADMQRLDQVLRELQPVLKT 522 (547)
T ss_pred HHHHHHHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666655555332 2233355666666666666654433333
No 53
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=28.17 E-value=1.9e+02 Score=28.86 Aligned_cols=60 Identities=17% Similarity=0.333 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHh-hcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHH
Q 006506 225 TRALRQNIQEVERVL-SESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEA 291 (643)
Q Consensus 225 ~~el~~~~~e~~~~l-~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~ 291 (643)
..-|..||.++|+.+ |+.....+-|..+.+.+......|..|.+.. .|+++++...||--
T Consensus 7 l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~r-------e~i~~l~k~~~eL~ 67 (174)
T PF07426_consen 7 LDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKR-------ERIKELFKRIEELN 67 (174)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHccc-------HHHHHHHHHHHHHH
Confidence 357889999999887 6543333446667777777777777777666 56666666666553
No 54
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.58 E-value=3.4e+02 Score=30.12 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=59.3
Q ss_pred HHHHhHHHHHHHHhhhhhhcCCCCChH----HHHHHHHHHHHHH-------HHhhcccCCC-CCCccHHHHHHHHHHHHH
Q 006506 197 MVKKLKDQLFVARAYYPSIAKLPSQDK----LTRALRQNIQEVE-------RVLSESATDV-DLPPGIEKKIQRMEAAIT 264 (643)
Q Consensus 197 ~~~~~~dq~~~a~~y~~~~a~~~~~~~----~~~el~~~~~e~~-------~~l~~~~~d~-~l~~~~~~~~~~m~~~~~ 264 (643)
--.+|+.||+.++. .++|.++.-+ +.+.++.+-+-+| +-.+|-.-.+ .|-++..+.++--..+..
T Consensus 107 qnqkL~nqL~~~~~---vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 107 QNQKLKNQLFHVRE---VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred hHHHHHHHHHHHHH---HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999998 3788888733 3333333322233 2222211111 122333333332223333
Q ss_pred HhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhh
Q 006506 265 KAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAV 306 (643)
Q Consensus 265 ~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~l~~laa 306 (643)
.=+.-.....+|.+|=.+-+..+|.+++-.+-.-.=|-||+.
T Consensus 184 eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 184 EYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred HhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334445778888888778888899998865554444555554
No 55
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.16 E-value=83 Score=32.66 Aligned_cols=130 Identities=15% Similarity=0.297 Sum_probs=74.4
Q ss_pred HHHHhHHHHHHHHhhhhhhcCCCCC-hHHHHHHHHHHHHHHH-----------Hhhc--ccCCCCCCccHHHHHHHHHHH
Q 006506 197 MVKKLKDQLFVARAYYPSIAKLPSQ-DKLTRALRQNIQEVER-----------VLSE--SATDVDLPPGIEKKIQRMEAA 262 (643)
Q Consensus 197 ~~~~~~dq~~~a~~y~~~~a~~~~~-~~~~~el~~~~~e~~~-----------~l~~--~~~d~~l~~~~~~~~~~m~~~ 262 (643)
-+++++.|+-..++|...+.+.-.+ .+-..+|.++|.+++. ++.+ .-...|+|-...++.+.++.+
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L 136 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARL 136 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 5788889999999886444432222 3344566666666652 2322 223467777777655555443
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHhhhcCCccccccccccchhhhcCCc
Q 006506 263 ITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQLAVQTMPKSLHCLSMRLTVEYFKSPS 329 (643)
Q Consensus 263 ~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~l~~laa~~~Pk~lhcL~~rlt~ey~~~~~ 329 (643)
-....+.. -.+..|+|.++++...++..-.+-+.+=..|...+-|..--+|-+=-..=||.+.+
T Consensus 137 ~~~l~~~d---v~~~ek~r~vlea~~~E~~yg~~i~~~~~~i~~dG~~~~V~~LrlGr~~l~~~t~D 200 (251)
T PF11932_consen 137 RAMLDDAD---VSLAEKFRRVLEAYQIEMEYGRTIEVYQGTITLDGEERQVDFLRLGRVALYYQTLD 200 (251)
T ss_pred HHhhhccC---CCHHHHHHHHHHHHHHHHHhCCceeEEEEEEeECCeEEEEEEEeecchhheeECCC
Confidence 33332222 23568999999999999886554444433344445555555555544444444444
No 56
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=27.00 E-value=68 Score=23.92 Aligned_cols=23 Identities=35% Similarity=0.781 Sum_probs=17.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHH
Q 006506 21 RWRSLVIGVLFLVILSMLVPLAF 43 (643)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ 43 (643)
||=|+++|++.+++......++|
T Consensus 9 ~W~Gl~~g~~l~~~~~tG~~~~f 31 (37)
T PF13706_consen 9 RWLGLILGLLLFVIFLTGAVMVF 31 (37)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 78899998888887766666665
No 57
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=26.94 E-value=46 Score=34.53 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.1
Q ss_pred hhhhhhccCCeEEEEecceeEeCC
Q 006506 458 LLPEIFQSLTKVVVLDDDVVVQKD 481 (643)
Q Consensus 458 ~IPeLLP~ldKVLYLD~DvVV~~D 481 (643)
.+..+||+++-||+||+|+.|...
T Consensus 34 vva~~L~~~~~vlflDaDigVvNp 57 (222)
T PF03314_consen 34 VVAKILPEYDWVLFLDADIGVVNP 57 (222)
T ss_pred HHHHHhccCCEEEEEcCCceeecC
Confidence 456778899999999999999753
No 58
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=25.89 E-value=1.9e+02 Score=25.38 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCc-chHHHHHHHHHHHHhHHHHHHHhhHHH
Q 006506 223 KLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVD-CSNVDKKFRQILDMTNDEANFHMKQSA 299 (643)
Q Consensus 223 ~~~~el~~~~~e~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~~~~-~~~~~~klr~~~~~~E~~~~~~~~q~~ 299 (643)
.+..||.+=+.+++.+++++..++ -..+.+.-..++..+..+++-.-+ ...+..+.+.....+|+.++.+--++.
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~--~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~sv 77 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLA--GEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSV 77 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 355666666666666666654321 112222222222233333222211 123567888999999999987666554
No 59
>PLN02867 Probable galacturonosyltransferase
Probab=25.37 E-value=1.2e+02 Score=35.40 Aligned_cols=73 Identities=10% Similarity=0.141 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccCC--CCCCccHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhH
Q 006506 223 KLTRALRQNIQEVERVLSESATD--VDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQ 297 (643)
Q Consensus 223 ~~~~el~~~~~e~~~~l~~~~~d--~~l~~~~~~~~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q 297 (643)
++.+|+.+-..|... .+.... .+.|+++++.+.+|+...++++.+..-..+|..++...+++.-.|..+...-
T Consensus 93 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~l 167 (535)
T PLN02867 93 KLREELTRALVEAKE--QDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHL 167 (535)
T ss_pred HHHHHHHHHHHHhhh--ccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665211 111111 2478889999999999999999999888888888888877777776654433
No 60
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.74 E-value=1.6e+02 Score=32.63 Aligned_cols=48 Identities=13% Similarity=0.125 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Q 006506 256 IQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANFHMKQSAFLYQ 303 (643)
Q Consensus 256 ~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~~~~q~~~l~~ 303 (643)
|...-..++..|+...+...-.+||++|.+.+|+++....++...|..
T Consensus 227 me~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 227 MERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444445555555556689999999999999999999888764
No 61
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.57 E-value=1.1e+02 Score=32.86 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=13.5
Q ss_pred CCcchHHHHHHHHHHHHhHH
Q 006506 270 PVDCSNVDKKFRQILDMTND 289 (643)
Q Consensus 270 ~~~~~~~~~klr~~~~~~E~ 289 (643)
++|...=-+||..+|++||-
T Consensus 151 FvDINiQN~KLEsLLqsMEl 170 (305)
T PF15290_consen 151 FVDINIQNKKLESLLQSMEL 170 (305)
T ss_pred HhhhhhhHhHHHHHHHHHHH
Confidence 35555556678888888874
No 62
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=21.31 E-value=1.1e+02 Score=37.32 Aligned_cols=46 Identities=22% Similarity=0.386 Sum_probs=31.0
Q ss_pred HHHHHhHHHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHhhccc
Q 006506 196 TMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESA 243 (643)
Q Consensus 196 ~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~e~~~~l~~~~ 243 (643)
+.||++-|- +-|+.| |---+.....+...|++.||+|++.+|+...
T Consensus 236 ~kIkKIcd~-f~a~~y-p~p~~~~er~~~~~~v~~ri~DL~~Vl~~t~ 281 (829)
T KOG2189|consen 236 QKIKKICDG-FGATLY-PCPESPEERKEMLLEVNTRISDLQTVLDQTE 281 (829)
T ss_pred HHHHHHHhc-cCcEee-cCCCChHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 355555553 456776 5323333347888999999999999998753
No 63
>PF05397 Med15_fungi: Mediator complex subunit 15; InterPro: IPR008626 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family represents subunit 15 of the Mediator complex in fungi. It contains Saccharomyces cerevisiae GAL11 (Med15) protein. Gal11 (Med15) and Sin4 (Med16) proteins are S. cerevisiae global transcription factors that regulate transcription of a variety of genes, both positively and negatively. Gal11, in a major part, functions in the activation of transcription, whereas Sin4 has an opposite role [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.16 E-value=88 Score=29.18 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=37.9
Q ss_pred cccccchhHHHHHhHHHHHHHHhhhhhhcCCCCChHHHHHHHHHHHHHHHHh
Q 006506 188 EHREEMKDTMVKKLKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVL 239 (643)
Q Consensus 188 ~~~~~~~d~~~~~~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~e~~~~l 239 (643)
|.+..+.+ .++.+.|.+....+++|-++++.+|+..+++|-+=-=-+.+.+
T Consensus 32 eeK~~i~~-~l~~~~~m~~~vd~li~~f~~lt~ne~~~k~LlqMr~~~~~q~ 82 (115)
T PF05397_consen 32 EEKAAIRQ-QLQEIQDMLARVDSLIPWFYKLTKNEENTKRLLQMRIMLKEQF 82 (115)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 44555555 4578888999999999999999999999998865333344444
No 64
>PRK15384 type III secretion system protein; Provisional
Probab=20.74 E-value=44 Score=35.38 Aligned_cols=85 Identities=25% Similarity=0.320 Sum_probs=50.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcC---CCcchHHHHHHHHHHH--HhHHHHHH
Q 006506 219 PSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSV---PVDCSNVDKKFRQILD--MTNDEANF 293 (643)
Q Consensus 219 ~~~~~~~~el~~~~~e~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~---~~~~~~~~~klr~~~~--~~E~~~~~ 293 (643)
+.+.-|-.=+..-+-|-||++|-- +|+|....-.+...++|+--...|-+ .+|-+--++||-.+-. ..|++++.
T Consensus 70 k~~PYL~NiinaA~IE~eR~IGv~-VDGdFs~~Qk~af~kLE~~yeNIkiIYr~dvdfSMYDkKLsdIY~enI~kqe~~~ 148 (336)
T PRK15384 70 EKNPYLNNIIKAATIEKERLIGIF-VDGDFFPGQKDAFSKLEYDYENIKVIYRNDIDFSMYDKKLSEIYMENISKQESMP 148 (336)
T ss_pred CcCchHHHhHhHhhhccccEEEEE-EcCCcChhHHHHHHHHHHhhhcEEEEEeccCChhhhhhHHhHHHHHHHHHhhcCc
Confidence 444445444555555667777654 67776666666666677655555543 3566666788876543 34666666
Q ss_pred HhhHHHHHHHH
Q 006506 294 HMKQSAFLYQL 304 (643)
Q Consensus 294 ~~~q~~~l~~l 304 (643)
+.+.-++|-++
T Consensus 149 ~~~RD~yLL~l 159 (336)
T PRK15384 149 EEKRDYHLLQL 159 (336)
T ss_pred hhhhHHHHHHH
Confidence 66666665544
No 65
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=20.61 E-value=1.3e+02 Score=26.90 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcc
Q 006506 25 LVIGVLFLVILSMLVPLAFLLGLHN 49 (643)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (643)
++|-|+++|++-+.+--+.|.|||-
T Consensus 36 lliivvVvVlvVvvivg~LLMGLhm 60 (93)
T PF08999_consen 36 LLIIVVVVVLVVVVIVGALLMGLHM 60 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----
T ss_pred EEEEEEeeehhHHHHHHHHHHHhhh
Confidence 4444444444434333455678864
No 66
>PLN00090 photosystem II reaction center M protein; Provisional
Probab=20.60 E-value=1.1e+02 Score=28.05 Aligned_cols=19 Identities=32% Similarity=0.600 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 006506 29 VLFLVILSMLVPLAFLLGL 47 (643)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~ 47 (643)
.+.-+.|+++||-+|||-|
T Consensus 77 afIATaLFIlIPTaFLLIL 95 (113)
T PLN00090 77 AYLAVALGTFLPCLFLINL 95 (113)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444669999999999988
No 67
>PRK15383 type III secretion system protein; Provisional
Probab=20.44 E-value=47 Score=35.17 Aligned_cols=87 Identities=23% Similarity=0.267 Sum_probs=55.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcC---CCcchHHHHHHHHHHH--HhHHHH
Q 006506 217 KLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSV---PVDCSNVDKKFRQILD--MTNDEA 291 (643)
Q Consensus 217 ~~~~~~~~~~el~~~~~e~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~---~~~~~~~~~klr~~~~--~~E~~~ 291 (643)
-.+.+.-|-.=+..-+-|-||++|-- +|+|....-.+...++|+--...|-+ .+|-+--++||-.+-. ..|+++
T Consensus 69 NTk~~PYL~NiinaA~IE~eR~IGv~-VDGdFs~~Qk~af~kLE~~yeNIkiIYr~dvdfSMYDkKLsdIY~enI~kqe~ 147 (335)
T PRK15383 69 NTQKNPYLNNIINAAIIEKERIIGIF-VDGDFSKGQRKALGKLEQNYRNIKVIYNSDLNYSMYDKKLTTIYLENITKLEA 147 (335)
T ss_pred ecCcCchHHHhhhHhhhccccEEEEE-EcCCcChhHHHHHHHHHHhhhcEEEEEeccCChhhhhhhHhHHHHHHHHHhhc
Confidence 33455555555555566677888754 67787666666677777766655544 4666777789986654 356666
Q ss_pred HHHhhHHHHHHHH
Q 006506 292 NFHMKQSAFLYQL 304 (643)
Q Consensus 292 ~~~~~q~~~l~~l 304 (643)
+.+.+.-.+|-++
T Consensus 148 ~~~~~RD~yLL~l 160 (335)
T PRK15383 148 QSASERDEVLLNG 160 (335)
T ss_pred CChhhhhHHHHHH
Confidence 6666666665544
No 68
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.41 E-value=1.9e+02 Score=30.14 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=49.6
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHH
Q 006506 214 SIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANF 293 (643)
Q Consensus 214 ~~a~~~~~~~~~~el~~~~~e~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~ 293 (643)
.++.+.+.+++..|++..+.+| +.|-..-.+-.+.+.+-+..||.+|..+++---.....+.++..-+.-+-+++..
T Consensus 23 e~~~~e~ee~~L~e~~kE~~~L---~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 23 EVESLENEEKCLEEYRKEMEEL---LQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788888888777755 3332222223467778899999999999998855444445555444455555553
No 69
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=20.25 E-value=48 Score=35.11 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=57.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcccCCCCCCccHHHHHHHHHHHHHHhhcC---CCcchHHHHHHHHHHH--HhHHHH
Q 006506 217 KLPSQDKLTRALRQNIQEVERVLSESATDVDLPPGIEKKIQRMEAAITKAKSV---PVDCSNVDKKFRQILD--MTNDEA 291 (643)
Q Consensus 217 ~~~~~~~~~~el~~~~~e~~~~l~~~~~d~~l~~~~~~~~~~m~~~~~~ak~~---~~~~~~~~~klr~~~~--~~E~~~ 291 (643)
-.+.+.-|-.=+..-+-|-||++|-- +|+|....-.+...++|+--...|-+ .+|-+--++||-.+-. ..|+++
T Consensus 63 NTk~~PYL~NiinaA~IE~eR~IGv~-VDGdFs~~Qk~af~kLE~~~eNIkiIYr~dvdfSMYDkKLsdIY~enI~~qe~ 141 (326)
T PRK15382 63 NTKEHPYLSNIINAAKIENERIIGVL-VDGDFTYEQKKEFLSLENEFQNIKIIYREDVDFSMYDKKLSDIYLENIHEQES 141 (326)
T ss_pred ecCcCchHHHhhhHhhhccccEEEEE-EcCCcChhHHHHHHHHHHhhhcEEEEEeccCChhhhhhhHhHHHHHHHHHhhc
Confidence 33555555555556666777888754 67787666666677777766666544 3666667788886654 457777
Q ss_pred HHHhhHHHHHHHHh
Q 006506 292 NFHMKQSAFLYQLA 305 (643)
Q Consensus 292 ~~~~~q~~~l~~la 305 (643)
+.+.+.-.+|-+|-
T Consensus 142 ~~~~~RD~yLL~ll 155 (326)
T PRK15382 142 YPASERDNYLLGLL 155 (326)
T ss_pred CChhhhhHHHHHHH
Confidence 76666666665543
No 70
>PRK10998 malG maltose transporter permease; Provisional
Probab=20.20 E-value=82 Score=33.14 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=25.0
Q ss_pred ccCccccchhhhH-HHHHHHHHHHHHHHHHHHhh
Q 006506 15 VTTGKRRWRSLVI-GVLFLVILSMLVPLAFLLGL 47 (643)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 47 (643)
+.+.+.|||.++. .++.++.+.+++|++.++..
T Consensus 4 ~~~~~~~~r~~~~~~~~~~~~~~~~~P~~~~v~~ 37 (296)
T PRK10998 4 VQPKSQKLRLFATHLLLLGFIALIMFPLLMVIAI 37 (296)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889998886 55666667788999888754
No 71
>PLN02939 transferase, transferring glycosyl groups
Probab=20.19 E-value=3.2e+02 Score=34.36 Aligned_cols=62 Identities=15% Similarity=0.349 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcccCCCC-------CCccHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhHHHHHH
Q 006506 231 NIQEVERVLSESATDVD-------LPPGIEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANF 293 (643)
Q Consensus 231 ~~~e~~~~l~~~~~d~~-------l~~~~~~~~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~ 293 (643)
....+|.+|..++.-.+ --....+++.++|..+..|.-.-..|.++ ..|++-+...||+++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 369 (977)
T PLN02939 301 KVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKV-ELLQQKLKLLEERLQA 369 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHH-HHHHHHHHHHHHHHHh
Confidence 34444555555544333 13345778999999999999888888777 7777777777777663
No 72
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism]
Probab=20.01 E-value=56 Score=35.92 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.1
Q ss_pred hccCCeEEEEecceeEeCCchHHHcccC
Q 006506 463 FQSLTKVVVLDDDVVVQKDLSALWDINM 490 (643)
Q Consensus 463 LP~ldKVLYLD~DvVV~~DLseLw~iDL 490 (643)
|.+..+.+|+|.|+-+..++..++++-.
T Consensus 122 ~~~~~a~i~~~~~i~~~~~~~~~~~v~~ 149 (369)
T KOG1950|consen 122 LIEDGAAIYLVDDIQRFRNDDANFDVPN 149 (369)
T ss_pred eeccCceEEEecchhhccCccccccccc
Confidence 4567999999999999999888887643
Done!