Query 006506
Match_columns 643
No_of_seqs 275 out of 1313
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 18:05:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006506.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2135-2139//hhsearch_pdb/006506hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 1.0 1 1 345.8 18.6 254 344-636 4-275 (276)
2 1g9r_A Glycosyl transferase; a 1.0 1 1 315.9 18.4 247 346-630 1-269 (311)
3 1ll2_A Glycogenin-1; protein-s 1.0 1 1 205.1 15.0 223 345-632 4-256 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 1.0 1 1 188.3 12.0 220 347-631 6-256 (263)
5 1o7q_A N-acetyllactosaminide a 1.0 1 1 19.0 13.2 193 345-586 49-262 (289)
6 3ab3_B RHO guanine nucleotide 1.0 1 1 17.1 -5.8 34 359-393 73-109 (246)
7 1iap_A Guanine nucleotide exch 1.0 1 1 16.9 -2.2 35 359-394 19-56 (211)
8 1m1j_C Fibrinogen gamma chain; 1.0 1 1 16.4 6.5 105 177-293 13-123 (409)
9 3arc_M Photosystem II reaction 1.0 1 1 15.9 2.3 16 32-47 10-25 (36)
10 3v1a_A Computational design, M 1.0 1 1 15.5 4.5 36 201-237 6-41 (48)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=1.00 E-value=1 Score=345.84 Aligned_cols=254 Identities=14% Similarity=0.167 Sum_probs=201.4
Q ss_pred CCEEEEEE-ECCCHHH-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHH
Q ss_conf 92189998-1996146-999999987309999719999949989888999997336888149999734421245416788
Q 006506 344 SLHHYVIF-STNVLAS-SVVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAIL 421 (643)
Q Consensus 344 ~~iHIvi~-sDNvLaa-sVvInSii~Nsk~p~~ivFHIItD~is~~~mk~wF~~n~~~~a~I~Vi~ie~~~~~~~~~~~l 421 (643)
-.+|||++ ++|++.. .|+|+|++.|+++ ++++|||++++++.+..+.+...-...+..|+++.+++-.+.
T Consensus 4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~------- 75 (276)
T 3tzt_A 4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFS------- 75 (276)
T ss_dssp -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred EEEEEEEEECHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECHHHHH-------
T ss_conf 067899995786899999999999984998-764899982899999999999999875998999982889971-------
Q ss_pred HHHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCEEEECCCHHHHCCCCCCCEEEEECC
Q ss_conf 7503541001102357999865545423386778865321302-578299981456680791678711489971254213
Q 006506 422 IHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQ-SLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQS 500 (643)
Q Consensus 422 ~~l~~~~~fr~~f~~~~~p~~~~r~~ylS~lny~Rl~LPeLlP-~ldKVLYLD~DVIVq~DLseLw~iDL~gkviaAVed 500 (643)
..+. .+++|..+|+||++|+++| +++||||||+|+||++||++||++||+|+.+|||+|
T Consensus 76 ----------------~~~~----~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d 135 (276)
T 3tzt_A 76 ----------------FAKV----TDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASH 135 (276)
T ss_dssp ----------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC
T ss_pred ----------------CCCC----CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCHHHHHHCCCCCCEEEEEEE
T ss_conf ----------------4864----46548999999999997001168499991885641798999625889986999982
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCHHHHCCCCE
Q ss_conf 42223455432125999999875324407760378878659999999999716-----9941101100100021026846
Q 006506 501 CSVSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS-----MGEESKEAVALRGSLLTFQDLV 575 (643)
Q Consensus 501 c~~~~~~~~~yl~~~~~~~~~cyfNSGVlLiDL~kWRk~nitek~~~~lq~~~-----~DQdllnlGsLP~~ll~F~g~i 575 (643)
|.... ..++....+++...||||||||||||++||+.++++++++++++.. .|||++| ++|.+++
T Consensus 136 ~~~~~--~~~~~~~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~LN--------~~f~~~~ 205 (276)
T 3tzt_A 136 TGKTD--MANNVNRIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLLPDQDILN--------AMYGDRI 205 (276)
T ss_dssp ----------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC--------CHHHH--------HHHGGGE
T ss_pred CCCCH--HHHHHHHHCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH--------HHHHCCE
T ss_conf 34411--7788887437988874772079987999986429999999999663666578845999--------9985898
Q ss_pred EEECC-CCCCCCCCCCC--------CCC-HHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf 88078-43435778889--------888-754169869982489998534995302999999982080101
Q 006506 576 YALDG-VWALSGLGHDY--------GLN-IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLNQEDQLL 636 (643)
Q Consensus 576 ~~Ld~-~WN~~gLGyd~--------~i~-~e~ie~a~IIHY~G~~KPW~~~~~~~yr~lW~kYl~~s~~fl 636 (643)
++||. +||+++ ++.. ... ....++++||||+|..|||...+.++|+++||+|++...++|
T Consensus 206 ~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 206 YPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp EEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred EECCCHHEEEEC-CCCHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 998853214532-3220331066312215565149759998999989688889815999999999999863
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=1.00 E-value=1 Score=315.86 Aligned_cols=247 Identities=19% Similarity=0.248 Sum_probs=186.9
Q ss_pred EEEEE-EECCCHHH-HHHHHHH-HHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHH
Q ss_conf 18999-81996146-9999999-873099997199999499898889999973368881499997344212454167887
Q 006506 346 HHYVI-FSTNVLAS-SVVINST-VLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILI 422 (643)
Q Consensus 346 iHIvi-~sDNvLaa-sVvInSi-i~Nsk~p~~ivFHIItD~is~~~mk~wF~~n~~~~a~I~Vi~ie~~~~~~~~~~~l~ 422 (643)
+||++ +++|++.. .|+++|+ +.|+. .+++|||++++++.+..+.+.......+..|.++.++.-.+.
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~-------- 70 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFA-------- 70 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGT--------
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHCCC--CCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHH--------
T ss_conf 9499987786899999999989997699--883599998999999999999999875998999984889971--------
Q ss_pred HHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHHCCCCCCCEEEEECCCC
Q ss_conf 50354100110235799986554542338677886532130257829998145668079167871148997125421342
Q 006506 423 HMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 502 (643)
Q Consensus 423 ~l~~~~~fr~~f~~~~~p~~~~r~~ylS~lny~Rl~LPeLlP~ldKVLYLD~DVIVq~DLseLw~iDL~gkviaAVedc~ 502 (643)
..|. ...++|..+|+||++|++||+++||||||+|+||++||++||++||+|+++|||+||.
T Consensus 71 ---------------~~~~---~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~ 132 (311)
T 1g9r_A 71 ---------------GFPL---NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLF 132 (311)
T ss_dssp ---------------TSCC---CCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHH
T ss_pred ---------------CCCC---CCCCCCHHHHHHHHHHHHHHHCCEEEEECCCEEECCCHHHHHCCCCCCCEEEEEECCC
T ss_conf ---------------3865---4242789999999999985414879998178676267799945287886799984542
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCHHHHCCCCEEE
Q ss_conf 2234554321259999998753244077603788786599999999997169-----94110110010002102684688
Q 006506 503 VSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVSM-----GEESKEAVALRGSLLTFQDLVYA 577 (643)
Q Consensus 503 ~~~~~~~~yl~~~~~~~~~cyfNSGVlLiDL~kWRk~nitek~~~~lq~~~~-----DQdllnlGsLP~~ll~F~g~i~~ 577 (643)
... ...+....++++..|||||||||||+++||+.++++++++|+++... ||+++| ++|.+++..
T Consensus 133 ~~~--~~~~~~~~~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN--------~~f~~~~~~ 202 (311)
T 1g9r_A 133 VER--QEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILN--------GLFKGGVCY 202 (311)
T ss_dssp HHT--STTHHHHTTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHH--------HHHTTSEEE
T ss_pred HHH--HHHHHHHCCCCCCCCEEEEEEEEEEHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHH--------HHHCCCEEE
T ss_conf 244--1999985478889846864443460999986026999999999665767558727999--------998097798
Q ss_pred ECCCCCCCCCCCCC---------CCC-----HHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 07843435778889---------888-----754169869982489998534995302999999982
Q 006506 578 LDGVWALSGLGHDY---------GLN-----IEAIKKAAVLHYNGNMKPWLELGIPRYKKFWKKFLN 630 (643)
Q Consensus 578 Ld~~WN~~gLGyd~---------~i~-----~e~ie~a~IIHY~G~~KPW~~~~~~~yr~lW~kYl~ 630 (643)
||.+||++...+.. ... .+..++++||||+|+.|||...+.+++.++|.++..
T Consensus 203 Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~~ 269 (311)
T 1g9r_A 203 ANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAG 269 (311)
T ss_dssp ECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHHH
T ss_pred CCHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 2800355741456776401466513566677613699889975996989978888960799999987
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=1.00 E-value=1 Score=205.05 Aligned_cols=223 Identities=15% Similarity=0.151 Sum_probs=148.0
Q ss_pred CEEEEEE-ECCCHHHH-HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHH
Q ss_conf 2189998-19961469-999999873099997199999499898889999973368881499997344212454167887
Q 006506 345 LHHYVIF-STNVLASS-VVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILI 422 (643)
Q Consensus 345 ~iHIvi~-sDNvLaas-VvInSii~Nsk~p~~ivFHIItD~is~~~mk~wF~~n~~~~a~I~Vi~ie~~~~~~~~~~~l~ 422 (643)
...|+++ +++++.++ |++.|+..|+++ .+++| +++++++.+..+.+... ... ++.++.+.... ...+.
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~----~~~--v~~v~~l~~~~--~~~~~ 73 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIV----FDE--VITVDILDSGD--SAHLT 73 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHH----CSE--EEECCTTSTTS--TTHHH
T ss_pred EEEEEEEECHHHHHHHHHHHHHHHHHCCC-CCEEE-EECCCCCHHHHHHHHHH----CCE--EEEEEECCCCC--HHHCC
T ss_conf 49999984887999999999999985899-98899-98499999999899985----998--99986368732--21102
Q ss_pred HHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHHCCCCCCCEEEEECCCC
Q ss_conf 50354100110235799986554542338677886532130257829998145668079167871148997125421342
Q 006506 423 HMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCS 502 (643)
Q Consensus 423 ~l~~~~~fr~~f~~~~~p~~~~r~~ylS~lny~Rl~LPeLlP~ldKVLYLD~DVIVq~DLseLw~iDL~gkviaAVedc~ 502 (643)
.+ .++. +..+|+||+++++ ++++||||||+|+||.+||++||+++ .+|||++.+
T Consensus 74 ~~-------------------~~~~--~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~~ 127 (333)
T 1ll2_A 74 LM-------------------KRPE--LGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELSAAPDPG 127 (333)
T ss_dssp HH-------------------HCGG--GHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSEEEECSS
T ss_pred CC-------------------CCCC--HHHHHHHHHHHHH-CCCCEEEEEECCEEECCCHHHHHCCC----CEEEEECCC
T ss_conf 02-------------------4641--6888899998675-27774999838987654999984887----615874578
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCCCCCCHHHHCCCCE---
Q ss_conf 223455432125999999875324407760378878659999999999716----9941101100100021026846---
Q 006506 503 VSLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS----MGEESKEAVALRGSLLTFQDLV--- 575 (643)
Q Consensus 503 ~~~~~~~~yl~~~~~~~~~cyfNSGVlLiDL~kWRk~nitek~~~~lq~~~----~DQdllnlGsLP~~ll~F~g~i--- 575 (643)
+ .+||||||||||+.. .+.+++++++.+.. .||+++| .+|.+..
T Consensus 128 --------------~---~~~fNsGvmlin~~~----~~~~~l~~~~~~~~~~~~~DQ~~LN--------~~f~~~~~~~ 178 (333)
T 1ll2_A 128 --------------W---PDCFNSGVFVYQPSV----ETYNQLLHVASEQGSFDGGDQGLLN--------TFFNSWATTD 178 (333)
T ss_dssp --------------S---TTSEEEEEEEECCCH----HHHHHHHHHHHHTCCTTSSHHHHHH--------HHTTTTTTSC
T ss_pred --------------C---CCCEEEEEEEEECCH----HHHHHHHHHHHHCCCCCCCCHHHHH--------HHHHHHCCCC
T ss_conf --------------8---765112599996887----8999999999864997787789999--------9997502357
Q ss_pred --EEECCCCCCCCCC-CCCCCC-HHHHCCCEEEECCCCCCCCCCCCC-----------------CCHHHHHHHHHHHC
Q ss_conf --8807843435778-889888-754169869982489998534995-----------------30299999998208
Q 006506 576 --YALDGVWALSGLG-HDYGLN-IEAIKKAAVLHYNGNMKPWLELGI-----------------PRYKKFWKKFLNQE 632 (643)
Q Consensus 576 --~~Ld~~WN~~gLG-yd~~i~-~e~ie~a~IIHY~G~~KPW~~~~~-----------------~~yr~lW~kYl~~s 632 (643)
..||.+||++... |...-. ....++++||||+|..|||...+. ..+.+.||.+++..
T Consensus 179 ~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~~~~ 256 (333)
T 1ll2_A 179 IRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTS 256 (333)
T ss_dssp GGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHCCCCCCHHCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 561587377546652100147778533897899989999988788788765424544454310789999999999762
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=1.00 E-value=1 Score=188.32 Aligned_cols=220 Identities=18% Similarity=0.174 Sum_probs=145.2
Q ss_pred EEEE-E-ECCCHHHH-HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 8999-8-19961469-9999998730999971999994998988899999733688814999973442124541678875
Q 006506 347 HYVI-F-STNVLASS-VVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAILIH 423 (643)
Q Consensus 347 HIvi-~-sDNvLaas-VvInSii~Nsk~p~~ivFHIItD~is~~~mk~wF~~n~~~~a~I~Vi~ie~~~~~~~~~~~l~~ 423 (643)
-+|. + +++|+.++ |++.|+..++++ .++++ +++++++.+..+.+-.. +. .++.++.+... +...+..
T Consensus 6 AyvTl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~L~~~----~~--~vi~V~~l~~~--~~~~~~~ 75 (263)
T 3u2u_A 6 AFVTLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKVLETV----FD--EVIMVDVLDSG--DSAHLTL 75 (263)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHH----SS--EEEECCCCCCC--CHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHCCC-CCEEE-EECCCCCHHHHHHHHHC----CC--EEEEEEECCCC--CHHHHHH
T ss_conf 9999997888999999999999986999-87899-96278999999999973----99--58996535873--4555653
Q ss_pred HCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHHCCCCCCCEEEEECCCCC
Q ss_conf 03541001102357999865545423386778865321302578299981456680791678711489971254213422
Q 006506 424 MFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSCSV 503 (643)
Q Consensus 424 l~~~~~fr~~f~~~~~p~~~~r~~ylS~lny~Rl~LPeLlP~ldKVLYLD~DVIVq~DLseLw~iDL~gkviaAVedc~~ 503 (643)
+ . ++.+ ..++.|++++++.+ ++||||||+|++|.+||++||+++ .+||++|.+
T Consensus 76 ~-------------~------rp~~--~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~- 128 (263)
T 3u2u_A 76 M-------------K------RPEL--GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPG- 128 (263)
T ss_dssp T-------------T------CTTG--GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SSEEEECTT-
T ss_pred H-------------C------CCCH--HHHHHHHHHCCCCC-CCEEEEECCCEEECCCHHHHHCCC----CCEEECCCC-
T ss_conf 0-------------3------7516--67759988640247-652899808985135979885787----514703578-
Q ss_pred CHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCCCCCCHHHHCCC-----C
Q ss_conf 23455432125999999875324407760378878659999999999716----99411011001000210268-----4
Q 006506 504 SLGQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREVS----MGEESKEAVALRGSLLTFQD-----L 574 (643)
Q Consensus 504 ~~~~~~~yl~~~~~~~~~cyfNSGVlLiDL~kWRk~nitek~~~~lq~~~----~DQdllnlGsLP~~ll~F~g-----~ 574 (643)
+ ..||||||||||+++ ++.+++.+++++.. .||+++| .+|.+ .
T Consensus 129 -------------~---~~~fNsGv~li~p~~----~~~~~l~~~~~~~~~~~~~DQd~LN--------~~f~~w~~~~~ 180 (263)
T 3u2u_A 129 -------------W---PDCFNSGVFVYQPSV----ETYNQLLHLASEQGSFDGGDQGILN--------TFFSSWATTDI 180 (263)
T ss_dssp -------------S---TTSEEEEEEEECCCH----HHHHHHHHHHHHHCCTTSSHHHHHH--------HHTTTTTTSCG
T ss_pred -------------C---CCCCCCEEEEECCCH----HHHHHHHHHHHHCCCCCCCCHHHHH--------HHHCCCCCCCE
T ss_conf -------------8---765567479973367----8999999999842898865578999--------98604344672
Q ss_pred EEEECCCCCCCCC-CCCCCCC-HHHHCCCEEEECCCCCCCCCCCCC-----------------CCHHHHHHHHHHH
Q ss_conf 6880784343577-8889888-754169869982489998534995-----------------3029999999820
Q 006506 575 VYALDGVWALSGL-GHDYGLN-IEAIKKAAVLHYNGNMKPWLELGI-----------------PRYKKFWKKFLNQ 631 (643)
Q Consensus 575 i~~Ld~~WN~~gL-Gyd~~i~-~e~ie~a~IIHY~G~~KPW~~~~~-----------------~~yr~lW~kYl~~ 631 (643)
++.||.+||++.. .|.+.-. .+..++++||||+|..|||...+. ..+-..||..+..
T Consensus 181 ~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~ 256 (263)
T 3u2u_A 181 RKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFTT 256 (263)
T ss_dssp GGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGGGSEEETTTTEEECCSSCGGGSSTHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCHHCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 6768931055132310465777842698499988988969888879887720366778530189999999999986
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=1.00 E-value=1 Score=18.97 Aligned_cols=193 Identities=8% Similarity=0.071 Sum_probs=105.5
Q ss_pred CEEEEE-EECCCH-HHH-HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHH
Q ss_conf 218999-819961-469-99999987309999719999949989888999997336888149999734421245416788
Q 006506 345 LHHYVI-FSTNVL-ASS-VVINSTVLCARESKNQVFHVLTDGQNYFAMKLWFFRNTFKEATVQVLNIEQLNLESHDKAIL 421 (643)
Q Consensus 345 ~iHIvi-~sDNvL-aas-VvInSii~Nsk~p~~ivFHIItD~is~~~mk~wF~~n~~~~a~I~Vi~ie~~~~~~~~~~~l 421 (643)
.+-+.+ +.-.+. .-. --+.|.=++=--..++++||+||.-+.-. ....-++..+.|..+.+... -....|
T Consensus 49 tIGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~~p-----~v~l~~~r~~~V~~i~~~~~--W~d~sm 121 (289)
T 1o7q_A 49 TVGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMP-----LIELGPLRSFKVFKIKPEKR--WQDISM 121 (289)
T ss_dssp CEEEEEEECTTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCC-----CCCCCTTEEEEEEECCCCSS--HHHHHH
T ss_pred EEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHCC-----CCCCCCCCEEEEEEECCCCC--CCHHHH
T ss_conf 69999999630089999999999998635897579999857822177-----54468997579999600048--846588
Q ss_pred HHHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHHCCCCCCCEEEEECCC
Q ss_conf 75035410011023579998655454233867788653213025782999814566807916787114899712542134
Q 006506 422 IHMFLPVEYRVSLLSVDGPSIHSKMQYISVFSHLHYLLPEIFQSLTKVVVLDDDVVVQKDLSALWDINMGGKVNGAVQSC 501 (643)
Q Consensus 422 ~~l~~~~~fr~~f~~~~~p~~~~r~~ylS~lny~Rl~LPeLlP~ldKVLYLD~DVIVq~DLseLw~iDL~gkviaAVedc 501 (643)
. | +-+..++...+++.++|-+.++|.|+++++++..= .| |..+|....-
T Consensus 122 ~----------------------R-----m~~i~~~~~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~ 170 (289)
T 1o7q_A 122 M----------------------R-----MKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAW 170 (289)
T ss_dssp H----------------------H-----HHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTT
T ss_pred H----------------------H-----HHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCHH---HH-HHHHHCCCHH
T ss_conf 9----------------------9-----99999999987740288799962785752367887---88-7788803878
Q ss_pred CCC-----H-----HHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHC--CC------CCCCCCCCC
Q ss_conf 222-----3-----45543212599999987532440776037887865999999999971--69------941101100
Q 006506 502 SVS-----L-----GQLKSYLGENSYDKNSCAWMSGLNIVDLARWRELDLTKTYQRLVREV--SM------GEESKEAVA 563 (643)
Q Consensus 502 ~~~-----~-----~~~~~yl~~~~~~~~~cyfNSGVlLiDL~kWRk~nitek~~~~lq~~--~~------DQdllnlGs 563 (643)
.-. + .+-..|+ +++.+..|+..|++==-..+--+ +++.|+..+..- ++ |..-||-
T Consensus 171 ~y~~~~~~fpYERrp~S~AyI---p~~eGdfYY~Ga~fGGt~~~vl~--l~~~c~~~i~~D~~n~I~A~wHDESHLNK-- 243 (289)
T 1o7q_A 171 WYKADPNDFTYERRKESAAYI---PFGEGDFYYHAAIFGGTPTQVLN--ITQECFKGILKDKKNDIEAQWHDESHLNK-- 243 (289)
T ss_dssp TTTSCGGGSCCCCCTTSTTCC---CTTCCSCCEEEEEEEECHHHHHH--HHHHHHHHHHHHHHTTCCCTTTHHHHHHH--
T ss_pred HHCCCCCCCCCCCCCCCEEEE---CCCCCCEEEECEEECCCHHHHHH--HHHHHHHHHHHHHHCCEEEEECCHHHHHH--
T ss_conf 767897779898896760011---58998878876460873899999--99999999999985790788423656667--
Q ss_pred CCCHHHHCCCCEEEECCCCCCCC
Q ss_conf 10002102684688078434357
Q 006506 564 LRGSLLTFQDLVYALDGVWALSG 586 (643)
Q Consensus 564 LP~~ll~F~g~i~~Ld~~WN~~g 586 (643)
....+..++.|++.|++..
T Consensus 244 ----Yf~~~KPtKvLSPEY~wd~ 262 (289)
T 1o7q_A 244 ----YFLLNKPTKILSPEYCWDY 262 (289)
T ss_dssp ----HHHHSCCSEEECGGGSBCG
T ss_pred ----HHHHCCCCEEECHHHCCCC
T ss_conf ----7764699878787777874
No 6
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction, protein complex, GTP-binding, membrane, transducer, lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo sapiens} PDB: 1shz_C*
Probab=1.00 E-value=1 Score=17.08 Aligned_cols=34 Identities=15% Similarity=0.014 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEECC---CCHHHHHHHH
Q ss_conf 9999999873099997199999499---8988899999
Q 006506 359 SVVINSTVLCARESKNQVFHVLTDG---QNYFAMKLWF 393 (643)
Q Consensus 359 sVvInSii~Nsk~p~~ivFHIItD~---is~~~mk~wF 393 (643)
+|-++=++.|+ +|..+-||+++|- .|...|++||
T Consensus 73 aVFL~yV~sq~-DPspLLfYL~tdlYk~~~~Ke~Rk~a 109 (246)
T 3ab3_B 73 MALLQHVALQF-EPGPLLCCLHADMLGSLGPKEAKKAF 109 (246)
T ss_dssp HHHHHHHHHHS-CSHHHHHHHHHHHHC-------CCTT
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999628-95254999999998545868899999
No 7
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=1.00 E-value=1 Score=16.92 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEC---CCCHHHHHHHHH
Q ss_conf 999999987309999719999949---989888999997
Q 006506 359 SVVINSTVLCARESKNQVFHVLTD---GQNYFAMKLWFF 394 (643)
Q Consensus 359 sVvInSii~Nsk~p~~ivFHIItD---~is~~~mk~wF~ 394 (643)
+|-++=++.|+ +|..+-||++|| ..+...|++||.
T Consensus 19 aVFL~yV~sq~-DPspLLfYL~tdlYk~~~~Ke~rk~~~ 56 (211)
T 1iap_A 19 MALLQHVALQF-EPGPLLCCLHADMLGSLGPKEAKKAFL 56 (211)
T ss_dssp HHHHHHHHHHS-CSHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999738-961569999999985458688999999
No 8
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=1.00 E-value=1 Score=16.42 Aligned_cols=105 Identities=16% Similarity=0.246 Sum_probs=46.3
Q ss_pred EECCCEEEEECCCCCCCHHHHHHHHH---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--
Q ss_conf 00144000101212332368999867---7999999633433079997389999999899999984102379999940--
Q 006506 177 LKFGSYCLWRREHREEMKDTMVKKLK---DQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVERVLSESATDVDLPPG-- 251 (643)
Q Consensus 177 ~~~g~y~~w~~~~~~~~~d~~~~~~~---dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~e~~~~l~~~~~d~~l~~~-- 251 (643)
-.||+||-=-- ...|.+.|+-+ -+|-.-.- .+.++.+-..-+.+|.+-|+++ .-+. ....|..
T Consensus 13 ~~~G~~CPT~C----~i~d~L~k~e~~V~~~l~~LE~---~l~elsn~ts~v~~Lvk~iq~~---~~~~--Q~~~~d~~e 80 (409)
T 1m1j_C 13 ERFGSYCPTTC----GIADFFNKYRLTTDGELLEIEG---LLQQATNSTGSIEYLIQHIKTI---YPSE--KQTLPQSIE 80 (409)
T ss_dssp GGGCCEEECTT----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---SCSS--TTCCSSCHH
T ss_pred CCCCCCCCCCC----CHHHHHHHHHHCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---CCCC--CCCCCCCHH
T ss_conf 66677689854----1888999877250038999999---9999998789999999998875---0555--687887156
Q ss_pred -HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -899999999999985107986157999999999985899988
Q 006506 252 -IEKKIQRMEAAITKAKSVPVDCSNVDKKFRQILDMTNDEANF 293 (643)
Q Consensus 252 -~~~~~~~m~~~~~~ak~~~~~~~~~~~klr~~~~~~E~~~~~ 293 (643)
+.++.++|..-+.+.....-....-+..|+.++...+.++..
T Consensus 81 ~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~ 123 (409)
T 1m1j_C 81 QLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQ 123 (409)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6777899999999999988603577999999998764799999
No 9
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=1.00 E-value=1 Score=15.86 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999988889998752
Q 006506 32 LVILSMLVPLAFLLGL 47 (643)
Q Consensus 32 ~~~~~~~~~~~~~~~~ 47 (643)
-+.|++++|-+||+.|
T Consensus 10 At~Lfi~iPt~FLlil 25 (36)
T 3arc_M 10 ATALFVLVPSVFLIIL 25 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999889999999
No 10
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=1.00 E-value=1 Score=15.47 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6779999996334330799973899999998999999
Q 006506 201 LKDQLFVARAYYPSIAKLPSQDKLTRALRQNIQEVER 237 (643)
Q Consensus 201 ~~dq~~~a~~y~~~~a~~~~~~~~~~el~~~~~e~~~ 237 (643)
|..|+++.+.|. --|+..+.-.=+.-|..|++|+++
T Consensus 6 L~EQ~~~I~~~I-~qAk~~rRfdEV~~L~~NL~EL~~ 41 (48)
T 3v1a_A 6 LAQQIKNIHSFI-HQAKAAGRMDEVRTLQENLHQLMH 41 (48)
T ss_dssp HHHHHHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999-999982472899999988999999
Done!