Query 006507
Match_columns 642
No_of_seqs 497 out of 3161
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 00:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1.4E-89 3E-94 757.4 42.5 537 35-623 65-617 (727)
2 PLN03192 Voltage-dependent pot 100.0 2E-63 4.2E-68 583.1 45.3 424 34-538 48-488 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 2.3E-62 5.1E-67 502.7 29.9 410 51-540 3-427 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 1.6E-58 3.4E-63 477.8 26.9 438 34-536 204-658 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 3.8E-58 8.2E-63 476.8 29.1 410 35-537 215-642 (815)
6 PRK09392 ftrB transcriptional 99.7 2.9E-16 6.2E-21 158.1 18.3 184 412-624 6-202 (236)
7 PRK11753 DNA-binding transcrip 99.7 6.2E-15 1.4E-19 145.6 20.7 176 422-626 6-199 (211)
8 PRK11161 fumarate/nitrate redu 99.6 1.5E-14 3.3E-19 145.4 18.0 182 415-626 15-215 (235)
9 KOG3713 Voltage-gated K+ chann 99.6 6.2E-15 1.3E-19 154.8 10.8 57 291-347 380-436 (477)
10 PRK10402 DNA-binding transcrip 99.6 6.8E-14 1.5E-18 139.8 16.6 179 424-632 19-208 (226)
11 PRK09391 fixK transcriptional 99.5 6.8E-13 1.5E-17 133.0 16.8 164 431-626 33-210 (230)
12 TIGR03697 NtcA_cyano global ni 99.4 2.7E-12 6E-17 124.8 15.4 85 444-537 1-86 (193)
13 COG0664 Crp cAMP-binding prote 99.4 8.6E-12 1.9E-16 122.6 19.0 166 417-611 4-181 (214)
14 cd00038 CAP_ED effector domain 99.4 1.3E-11 2.7E-16 108.1 13.7 107 420-537 1-108 (115)
15 PF00027 cNMP_binding: Cyclic 99.3 1.1E-11 2.4E-16 104.4 11.2 89 439-537 2-90 (91)
16 KOG1545 Voltage-gated shaker-l 99.3 1E-13 2.2E-18 138.5 -2.3 57 291-347 396-452 (507)
17 PRK13918 CRP/FNR family transc 99.3 6.1E-11 1.3E-15 116.2 16.7 167 435-626 5-180 (202)
18 smart00100 cNMP Cyclic nucleot 99.3 1.1E-10 2.5E-15 102.6 14.1 109 420-537 1-110 (120)
19 KOG1419 Voltage-gated K+ chann 99.2 2.9E-11 6.3E-16 127.5 10.6 90 284-380 265-354 (654)
20 PF00520 Ion_trans: Ion transp 99.2 9.3E-11 2E-15 113.7 9.9 184 91-337 2-200 (200)
21 COG2905 Predicted signal-trans 99.2 1.1E-09 2.3E-14 117.0 17.2 112 412-537 6-117 (610)
22 PLN02868 acyl-CoA thioesterase 99.1 3.5E-10 7.6E-15 123.2 14.0 113 412-537 7-119 (413)
23 PF07885 Ion_trans_2: Ion chan 99.1 2.1E-10 4.6E-15 94.6 8.9 55 288-342 24-78 (79)
24 KOG0614 cGMP-dependent protein 99.1 7.6E-11 1.6E-15 123.8 7.0 127 409-546 268-395 (732)
25 KOG0614 cGMP-dependent protein 99.1 1E-10 2.2E-15 122.8 7.6 117 405-536 146-262 (732)
26 KOG1113 cAMP-dependent protein 99.1 4.6E-10 9.9E-15 113.4 9.9 110 412-536 121-230 (368)
27 KOG1113 cAMP-dependent protein 98.7 3.8E-08 8.2E-13 99.7 7.3 116 407-536 234-349 (368)
28 KOG4390 Voltage-gated A-type K 98.6 2.9E-09 6.2E-14 107.8 -1.8 54 289-342 357-414 (632)
29 KOG1420 Ca2+-activated K+ chan 98.5 1.3E-07 2.7E-12 100.2 5.7 138 286-431 286-428 (1103)
30 PRK10537 voltage-gated potassi 98.3 5.8E-06 1.3E-10 88.8 12.8 54 288-341 168-221 (393)
31 PF01007 IRK: Inward rectifier 97.9 4.5E-05 9.7E-10 80.0 9.7 60 287-346 83-144 (336)
32 KOG3684 Ca2+-activated K+ chan 97.9 0.00042 9E-09 73.1 16.4 92 285-384 284-375 (489)
33 KOG2968 Predicted esterase of 97.8 3.2E-05 6.8E-10 86.8 6.0 99 428-537 500-599 (1158)
34 KOG1418 Tandem pore domain K+ 97.5 9E-05 2E-09 80.9 5.1 57 289-345 116-172 (433)
35 PF08412 Ion_trans_N: Ion tran 97.4 8.2E-05 1.8E-09 60.0 2.6 35 34-68 33-70 (77)
36 PRK11832 putative DNA-binding 97.4 0.0046 9.9E-08 59.9 14.9 147 428-607 14-165 (207)
37 PF04831 Popeye: Popeye protei 97.2 0.022 4.7E-07 51.9 15.6 105 423-537 14-120 (153)
38 KOG2968 Predicted esterase of 97.1 0.0045 9.7E-08 70.2 11.8 101 432-537 111-213 (1158)
39 KOG4404 Tandem pore domain K+ 96.6 0.0021 4.6E-08 65.0 4.5 60 289-348 187-254 (350)
40 KOG4404 Tandem pore domain K+ 96.6 0.00092 2E-08 67.6 1.8 51 288-338 80-130 (350)
41 KOG3827 Inward rectifier K+ ch 96.6 0.014 3E-07 60.7 10.3 60 288-347 112-173 (400)
42 KOG3542 cAMP-regulated guanine 95.6 0.024 5.2E-07 62.3 6.4 114 408-536 276-391 (1283)
43 KOG1418 Tandem pore domain K+ 95.5 0.0059 1.3E-07 66.6 1.6 48 287-334 241-296 (433)
44 KOG3193 K+ channel subunit [In 93.6 0.31 6.7E-06 52.7 8.8 41 290-330 219-259 (1087)
45 KOG2302 T-type voltage-gated C 93.5 0.53 1.1E-05 54.4 10.7 32 34-65 1101-1144(1956)
46 KOG3542 cAMP-regulated guanine 92.1 0.25 5.5E-06 54.6 5.7 104 399-525 23-126 (1283)
47 PLN03223 Polycystin cation cha 76.0 35 0.00075 42.0 12.9 28 317-344 1398-1425(1634)
48 COG4709 Predicted membrane pro 74.1 12 0.00026 35.6 7.0 71 353-425 5-79 (195)
49 PF07883 Cupin_2: Cupin domain 71.1 8.7 0.00019 29.9 4.8 45 439-490 3-48 (71)
50 PF00060 Lig_chan: Ligand-gate 69.7 9 0.00019 34.8 5.3 75 285-365 41-115 (148)
51 PF13314 DUF4083: Domain of un 66.8 35 0.00075 25.9 6.6 50 315-364 5-57 (58)
52 PF08006 DUF1700: Protein of u 66.8 25 0.00054 33.5 7.8 55 353-409 5-63 (181)
53 PRK13290 ectC L-ectoine syntha 63.8 38 0.00082 30.3 7.8 69 437-524 38-106 (125)
54 KOG3676 Ca2+-permeable cation 57.9 1.5E+02 0.0032 34.7 12.8 76 301-377 601-683 (782)
55 PF05899 Cupin_3: Protein of u 57.3 20 0.00042 28.8 4.4 41 442-490 15-55 (74)
56 TIGR03037 anthran_nbaC 3-hydro 55.4 28 0.00061 32.5 5.6 64 448-529 43-106 (159)
57 PRK13264 3-hydroxyanthranilate 48.8 37 0.00081 32.2 5.4 62 452-530 52-113 (177)
58 COG0662 {ManC} Mannose-6-phosp 40.0 93 0.002 27.7 6.5 50 434-490 36-86 (127)
59 PF02037 SAP: SAP domain; Int 38.1 69 0.0015 21.5 4.0 26 354-379 5-35 (35)
60 COG3718 IolB Uncharacterized e 37.9 1.5E+02 0.0033 29.4 7.7 78 436-528 31-112 (270)
61 PF14377 DUF4414: Domain of un 36.1 36 0.00078 29.5 3.0 45 365-409 51-105 (108)
62 COG1917 Uncharacterized conser 34.9 92 0.002 27.7 5.7 50 436-492 45-95 (131)
63 PLN03192 Voltage-dependent pot 32.8 9.4E+02 0.02 28.9 17.7 41 365-410 357-397 (823)
64 PF07697 7TMR-HDED: 7TM-HD ext 32.7 1.7E+02 0.0037 28.3 7.7 33 423-455 173-207 (222)
65 PF10011 DUF2254: Predicted me 32.2 1.3E+02 0.0029 32.2 7.2 60 284-345 96-157 (371)
66 smart00835 Cupin_1 Cupin. This 31.0 1.4E+02 0.003 27.2 6.2 55 435-491 31-87 (146)
67 PF00520 Ion_trans: Ion transp 29.2 3.6E+02 0.0078 24.9 9.1 12 291-302 144-155 (200)
68 PF13174 TPR_6: Tetratricopept 28.7 1E+02 0.0022 19.3 3.7 19 579-597 14-32 (33)
69 KOG1054 Glutamate-gated AMPA-t 28.1 54 0.0012 36.7 3.3 72 291-368 598-669 (897)
70 PF08285 DPM3: Dolichol-phosph 27.5 3.7E+02 0.0081 22.6 8.7 38 331-368 50-90 (91)
71 KOG3300 NADH:ubiquinone oxidor 27.1 2.6E+02 0.0057 25.0 6.7 45 355-400 62-106 (146)
72 PF07077 DUF1345: Protein of u 26.1 1.2E+02 0.0026 28.9 5.0 52 284-335 128-179 (180)
73 PF12973 Cupin_7: ChrR Cupin-l 24.4 1.4E+02 0.0031 24.6 4.6 64 435-523 25-88 (91)
74 KOG4440 NMDA selective glutama 22.7 1.9E+02 0.0042 32.8 6.2 53 290-342 615-667 (993)
75 TIGR02272 gentisate_1_2 gentis 22.5 2.3E+02 0.0051 30.0 6.7 76 439-535 255-330 (335)
76 TIGR03404 bicupin_oxalic bicup 22.5 2.2E+02 0.0048 30.6 6.7 51 437-490 70-121 (367)
77 COG5559 Uncharacterized conser 22.5 1.3E+02 0.0028 22.9 3.4 23 363-385 7-29 (65)
78 KOG2301 Voltage-gated Ca2+ cha 22.4 4.1E+02 0.0089 34.3 9.7 32 299-330 1061-1092(1592)
79 PF01484 Col_cuticle_N: Nemato 21.9 3.1E+02 0.0067 19.8 5.6 39 318-356 9-47 (53)
80 PRK04190 glucose-6-phosphate i 21.8 3.8E+02 0.0082 25.9 7.5 53 436-490 70-131 (191)
81 PF13623 SurA_N_2: SurA N-term 21.8 3.3E+02 0.0072 25.0 6.8 45 320-364 10-67 (145)
82 PF13525 YfiO: Outer membrane 21.6 2.9E+02 0.0062 26.6 6.9 67 526-600 110-176 (203)
83 KOG0498 K+-channel ERG and rel 20.3 3.6E+02 0.0079 31.7 8.2 42 396-437 371-417 (727)
84 KOG2301 Voltage-gated Ca2+ cha 20.0 6.4E+02 0.014 32.7 10.7 17 119-136 501-519 (1592)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-89 Score=757.43 Aligned_cols=537 Identities=36% Similarity=0.653 Sum_probs=467.0
Q ss_pred ccCceecCCCcc---hHHHHHHHHHHHHhhcceeeEEEEEcCCcceeeeCccceeehhhhHHHHHHHHhh-----hc---
Q 006507 35 HINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS--- 103 (642)
Q Consensus 35 ~~~~vi~P~s~~---Wd~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~D~~f~~-----f~--- 103 (642)
...++|+|.|+| ||.+++++|+|+++++|++++|+..+..+.| .|......++++|.++|++|++ |+
T Consensus 65 ~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtay 142 (727)
T KOG0498|consen 65 SRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAY 142 (727)
T ss_pred ccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEE
Confidence 445699999999 9999999999999999999999999888888 7877888899999999999999 54
Q ss_pred ---cC-ccccchhhhhhhhhhhHH-hHHHhhhcCCccchhhheeeccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 006507 104 ---SS-TPHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYA 178 (642)
Q Consensus 104 ---~~-~~v~d~~~Ia~~~~Ylk~-F~iDlls~lP~~~~~~~~~~~~~~~~~~~~~~~llrl~rl~~~l~rl~r~~~l~~ 178 (642)
++ ++|.||++||+ ||+++ |++|++|++|+++++.+..+. .++.... ...+..+.+++|++|+.|+.++++
T Consensus 143 v~~~s~elV~dpk~IA~--rYl~twFiiDlis~lP~~~i~~~~~~~--~~~~~~~-~~~l~~il~~~rL~Rl~Rv~~l~~ 217 (727)
T KOG0498|consen 143 VDPSSYELVDDPKKIAK--RYLKTWFLIDLISTLPFDQIVVLVVIG--STSLALE-STILVGILLLQRLPRLRRVIPLFA 217 (727)
T ss_pred ECCCCceeeeCHHHHHH--HHHhhhHHHHHHHhcChhhheeeeeec--ccchhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 59999999999 99999 999999999999999987651 1111111 123444445666999999999999
Q ss_pred HHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccccccCCCCccccccccCCC
Q 006507 179 VAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPT 258 (642)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~W~~~~~~~ 258 (642)
.+++..++..+++|++.++.+++|++++||.||+||++|.++.+.||.++ +|+...+..
T Consensus 218 r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~---------------------tw~~~l~~~ 276 (727)
T KOG0498|consen 218 RLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA---------------------TWLGSLGRL 276 (727)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------------------ccccccccc
Confidence 99999999999999997788889999999999999999999888888643 455542211
Q ss_pred CcCCCCccccchhHHHHhhcccccchhHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006507 259 MIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLT 338 (642)
Q Consensus 259 ~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~ 338 (642)
.++.+..|+||+| +++.+|++|+||+++||||+||||.+|+|..|++|+|++|++|.++||++||||+
T Consensus 277 ~~~~~~~~~fg~~------------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt 344 (727)
T KOG0498|consen 277 LSCYNLSFTFGIY------------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMT 344 (727)
T ss_pred cccCcccccccch------------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHH
Confidence 1123334667765 4567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHhhcccccchhhhHHHHHHHHhcCC
Q 006507 339 IYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKV 418 (642)
Q Consensus 339 ~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~l~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~~~~~~L~~i 418 (642)
+++++++.+.++|+.++.++++||++++||++||+||++|++|+|..++|+||++++++||+.||.+|++|++.++++++
T Consensus 345 ~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~v 424 (727)
T KOG0498|consen 345 ALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKV 424 (727)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhccC
Q 006507 419 PMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSAL 498 (642)
Q Consensus 419 ~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~~l 498 (642)
|+|+++|++.+.+|+.++++..|+|||+|++|||+.++||||.+|.+++...+||.+. +...+++||+|||.-+.|++
T Consensus 425 pLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~--~~~~L~~Gd~~GeEl~~~~~ 502 (727)
T KOG0498|consen 425 PLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFF--VVAILGPGDFFGEELLTWCL 502 (727)
T ss_pred chhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceE--EEEEecCCCccchHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998776443 47999999999965455655
Q ss_pred CCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhchhhhHHhhhhhhHHhhhchhhhhHHHhHHHHHHHHHHhhhhh
Q 006507 499 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLE 578 (642)
Q Consensus 499 ~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~ 578 (642)
+ .| ++++|+|+|.|+++.|+++||..++++| ++++++++++++++|+++|++|+++.+|.+|+++.+|...
T Consensus 503 ~------~p-~t~TVralt~~el~~L~~~dL~~V~~~f--~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~ 573 (727)
T KOG0498|consen 503 D------LP-QTRTVRALTYCELFRLSADDLKEVLQQF--RRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGE 573 (727)
T ss_pred c------CC-CCceeehhhhhhHHhccHHHHHHHHHHh--HHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhcc
Confidence 3 22 5889999999999999999999999999 7999999999999999999999999999999999998866
Q ss_pred hhHHHHHhhhHhhhhhcCCCCCcchhHHHHHHHHHHHHHHhhhcC
Q 006507 579 GSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNG 623 (642)
Q Consensus 579 ~~~~~a~ery~~~~~~~p~~~~~i~~~~ias~~~~~~~~~~~~~~ 623 (642)
...... +.....-.+.++..+.+.....|++++.+.++....+.
T Consensus 574 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 617 (727)
T KOG0498|consen 574 EELALE-EEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAA 617 (727)
T ss_pred chhhhh-cchhhhccccccchhhhhcccccccccccCCCcccccc
Confidence 544332 22222222566777788888999999999888776653
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=2e-63 Score=583.05 Aligned_cols=424 Identities=17% Similarity=0.247 Sum_probs=348.7
Q ss_pred cccCceecCCCcc---hHHHHHHHHHHHHhhcceeeEEEEEcCCcceeeeCccceeehhhhHHHHHHHHhh-----hc--
Q 006507 34 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS-- 103 (642)
Q Consensus 34 ~~~~~vi~P~s~~---Wd~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~D~~f~~-----f~-- 103 (642)
..+.++|+|.+++ ||.+++++++|+++++|+.++|. +......+.++|.++|++|++ |.
T Consensus 48 ~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~-----------~~~~~~~~~~~d~i~~~~F~iDi~l~f~~a 116 (823)
T PLN03192 48 GSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFL-----------NASPKRGLEIADNVVDLFFAVDIVLTFFVA 116 (823)
T ss_pred ccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHee-----------CCCCCCCeeeHHHHHHHHHHHHHHhheeEE
Confidence 3567899999988 99999999999999999976642 111112456789999999999 22
Q ss_pred -----cCccccchhhhhhhhhhhHH-hHHHhhhcCCccchhhheeeccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 006507 104 -----SSTPHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLY 177 (642)
Q Consensus 104 -----~~~~v~d~~~Ia~~~~Ylk~-F~iDlls~lP~~~~~~~~~~~~~~~~~~~~~~~llrl~rl~~~l~rl~r~~~l~ 177 (642)
++.+|.||++|++ ||+++ |++|++|++|++++..... . ........+++|++| +.|+.|+.+++
T Consensus 117 y~d~~~~~lV~d~~~I~~--~Yl~~~f~~Dlis~lP~~~i~~~~~--~--~~~~~~~~~~l~llr----l~Rl~ri~~~~ 186 (823)
T PLN03192 117 YIDPRTQLLVRDRKKIAV--RYLSTWFLMDVASTIPFQALAYLIT--G--TVKLNLSYSLLGLLR----FWRLRRVKQLF 186 (823)
T ss_pred EEeCCCcEEEeCHHHHHH--HHHHHhHHHHHHHHhHHHHHHHHhc--C--CccchHHHHHHHHHH----HHHHHHHHHHH
Confidence 3467899999999 99999 9999999999998754321 1 111111234445444 34555555555
Q ss_pred HHHhhccchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccccccCCCCccccccccC
Q 006507 178 AVAESTSGILAQMKWVKSACCILIY-LLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLC 256 (642)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~W~~~~~ 256 (642)
..+++... .+.....+.+++.+ ++++||+||+||+++... ...+.+|+....
T Consensus 187 ~~le~~~~---~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~------------------------~~~~~~Wi~~~~ 239 (823)
T PLN03192 187 TRLEKDIR---FSYFWIRCARLLSVTLFLVHCAGCLYYLIADRY------------------------PHQGKTWIGAVI 239 (823)
T ss_pred HHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------------------CCCCCchHHHhh
Confidence 55554321 12122234555544 468999999999998311 124568986421
Q ss_pred CCCcCCCCccccchhHHHHhhcccccchhHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 006507 257 PTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGN 336 (642)
Q Consensus 257 ~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~ 336 (642)
+ + ..+.+++.+|++|+|||++|||||||||++|.|+.|++|++++|++|+++|||++|+
T Consensus 240 ~---------~------------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~ 298 (823)
T PLN03192 240 P---------N------------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGN 298 (823)
T ss_pred h---------c------------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 235789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHhhcccccchhhhHHHHHHHHhc
Q 006507 337 LTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLK 416 (642)
Q Consensus 337 i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~l~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~~~~~~L~ 416 (642)
|++++.+.+.+..+|+++|+.+++||+++++|++||+||++|+++.|+. +..++++++++||+.||.++..+++.+.++
T Consensus 299 i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~ 377 (823)
T PLN03192 299 MTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVE 377 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999975 457889999999999999999999999999
Q ss_pred CCcccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhc
Q 006507 417 KVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 496 (642)
Q Consensus 417 ~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~ 496 (642)
++++|++++++++.+++..++++.|+|||.|+.+||.++++|||.+|.|+++..+++++.+ +..+++|++|||.+++
T Consensus 378 ~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~--l~~l~~Gd~FGE~~~l- 454 (823)
T PLN03192 378 KVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERV--VGTLGCGDIFGEVGAL- 454 (823)
T ss_pred hCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCccee--eEEccCCCEecchHHh-
Confidence 9999999999999999999999999999999999999999999999999998766666554 7899999999999874
Q ss_pred cCCCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhchh
Q 006507 497 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQ 538 (642)
Q Consensus 497 ~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P~ 538 (642)
.+ .+++++++|.++|+++.|++++|.++++++|+
T Consensus 455 --~~------~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~ 488 (823)
T PLN03192 455 --CC------RPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQE 488 (823)
T ss_pred --cC------CCCCCeEEEcccEEEEEEEHHHHHHHHHHhhH
Confidence 21 24789999999999999999999999999974
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-62 Score=502.75 Aligned_cols=410 Identities=20% Similarity=0.319 Sum_probs=344.2
Q ss_pred HHHHHHHHHhhcceeeEEEEEcCCcceeeeCccceeehhhhHHHHHHHHhh---hc-------cCccccchhhhhhhhhh
Q 006507 51 WLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII---YS-------SSTPHKHSRANAKKCFY 120 (642)
Q Consensus 51 ~~~~~~~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~D~~f~~---f~-------~~~~v~d~~~Ia~~~~Y 120 (642)
+.+.++|++++++.++.|+-+. ......|..+|+++|++|++ ++ +|..|+|-.+.++ ||
T Consensus 3 vs~~vLYN~~~li~r~~F~di~---------~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~--hY 71 (536)
T KOG0500|consen 3 VSLGVLYNMIVLIVRAAFDDIQ---------SSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRK--HY 71 (536)
T ss_pred EEEehHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHH--HH
Confidence 3456788888888765543321 11223578999999999999 22 8999999999999 99
Q ss_pred hHH--hHHHhhhcCCccchhhheeeccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhHH--HH
Q 006507 121 LNS--FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVK--SA 196 (642)
Q Consensus 121 lk~--F~iDlls~lP~~~~~~~~~~~~~~~~~~~~~~~llrl~rl~~~l~rl~r~~~l~~~~~~~~~~~~~~~~~~--~~ 196 (642)
+++ |.+|++|.+|+|++.++. ++. .+.| +.|++|++|++..+.+++. ++.++. .+
T Consensus 72 ~~s~~f~lD~l~liP~D~l~~~~------~~~-----~~~r-------~nRllk~yRl~~F~~rTet---rT~~Pn~fri 130 (536)
T KOG0500|consen 72 VHSTQFKLDVLSLIPLDLLLFKD------GSA-----SLER-------LNRLLKIYRLFEFFDRTET---RTTYPNAFRI 130 (536)
T ss_pred HHhhhhhhhhhhhcchhHHhhcC------Ccc-----hHHH-------HHHHHHHHHHHHHHHHhcc---ccCCchHHHH
Confidence 999 999999999999988753 221 2344 3566667777777777664 333333 46
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccccccCCCCccccccccCCCCcCCCCccccchhHHHH
Q 006507 197 CCILIYL-LAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAI 275 (642)
Q Consensus 197 ~~l~~~~-l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~g~y~~~l 275 (642)
.+|+.++ +++||.||+||+++... |.++++|.+.. ..+|. |+
T Consensus 131 ~~lv~~~~ilfHWNaClYf~iS~~~------------------------g~~~d~wvY~~--i~d~~-----~~------ 173 (536)
T KOG0500|consen 131 SKLVHYCLILFHWNACLYFLISKAI------------------------GFTTDDWVYPK--INDPE-----FA------ 173 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHhhhHhc------------------------CccccccccCC--ccCcc-----cc------
Confidence 6777654 68999999999998521 44567798842 11111 11
Q ss_pred hhcccccchhHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHH
Q 006507 276 QSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKA 355 (642)
Q Consensus 276 ~~~~~~~~~~~~~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~ 355 (642)
.....++..+|+.|+||+..||||+|-- .+|.++.|.+|.++-.++|+++||.|+|+|++++.++++...+||.+|
T Consensus 174 ---~c~~~n~~ReY~~S~YWStLTlTTiGe~-P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~m 249 (536)
T KOG0500|consen 174 ---TCDAGNLTREYLYSLYWSTLTLTTIGEQ-PPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKM 249 (536)
T ss_pred ---ccchhHHHHHHHHHHHHHhhhhhhccCC-CCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHH
Confidence 1123468999999999999999999964 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHhhcccccchhhhHHHHHHHHhcCCcccccCcHHHHHHHHhc
Q 006507 356 REIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKC 435 (642)
Q Consensus 356 ~~i~~~m~~~~lp~~l~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~ 435 (642)
|.+++||+.|++|++++.||.+||+|.|.+.+..||+++++.||+.|+.+|+.+++.+.|+++++|+++.+.++.+++..
T Consensus 250 DGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLk 329 (536)
T KOG0500|consen 250 DGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLK 329 (536)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhccCCCCCCCCCCCcceEEEE
Q 006507 436 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 515 (642)
Q Consensus 436 l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~ti~A 515 (642)
+++..|.|||+|+++||.+++||+|.+|.+++..+||+.. ...+++|++|||+++++ +. ...++.+|++++++
T Consensus 330 lk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIln-i~--g~~~gNRRtanvrS 402 (536)
T KOG0500|consen 330 LKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILN-IK--GNKNGNRRTANVRS 402 (536)
T ss_pred hcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEE-Ec--CcccCCcceeeeee
Confidence 9999999999999999999999999999999998776653 68999999999999864 33 33456789999999
Q ss_pred cceEEEEEEcHHHHHHHHHhchhhh
Q 006507 516 VTNVEAFAINTDDLRAIVYQYWQHR 540 (642)
Q Consensus 516 ~~~~~ll~Is~~~f~~ll~~~P~~~ 540 (642)
+..+++++++++|+.+.+++||+.+
T Consensus 403 vGYSDlfvLskdDl~~aL~eYP~a~ 427 (536)
T KOG0500|consen 403 VGYSDLFVLSKDDLWEALSEYPDAR 427 (536)
T ss_pred eccceeeEeeHHHHHHHHHhCCHHH
Confidence 9999999999999999999999544
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-58 Score=477.78 Aligned_cols=438 Identities=18% Similarity=0.298 Sum_probs=359.7
Q ss_pred cccCceecCCCcc---hHHHHHHHHHHHHhhcceeeEEEEEcCCcceeeeCccceeehhhhHHHHHHHHhh-----hc--
Q 006507 34 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS-- 103 (642)
Q Consensus 34 ~~~~~vi~P~s~~---Wd~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~D~~f~~-----f~-- 103 (642)
+.++.+|...+.| ||++++++.+|+++++|+-++ |.........|.++|.++|++|++ |+
T Consensus 204 KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNva----------FKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTT 273 (971)
T KOG0501|consen 204 KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVA----------FKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTT 273 (971)
T ss_pred CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeee----------ecccccCceeEEEecchhhhhhhhhhhhhccee
Confidence 6778899999999 999999999999999996543 433332345678999999999999 55
Q ss_pred ----cCccccchhhhhhhhhhhHH-hHHHhhhcCCccchhhheeeccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 006507 104 ----SSTPHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYA 178 (642)
Q Consensus 104 ----~~~~v~d~~~Ia~~~~Ylk~-F~iDlls~lP~~~~~~~~~~~~~~~~~~~~~~~llrl~rl~~~l~rl~r~~~l~~ 178 (642)
.|++|.||+.|+. +|+|+ |++|++|++|+|.+..+--. ..+ .-..+..|+ +.|++|+.|+.+
T Consensus 274 FVGPgGEVvsdPkvIRm--NYlKsWFvIDLLSCLPYDi~naF~~~--deg--I~SLFSaLK-------VVRLLRLGRVaR 340 (971)
T KOG0501|consen 274 FVGPGGEVVSDPKVIRM--NYLKSWFVIDLLSCLPYDIFNAFERD--DEG--IGSLFSALK-------VVRLLRLGRVAR 340 (971)
T ss_pred eecCCCceecChhHHhH--HHHHHHHHHHHHhcccHHHHHHhhcc--ccc--HHHHHHHHH-------HHHHHHHHHHHH
Confidence 6899999999999 99999 99999999999988654211 111 112234455 457777777777
Q ss_pred HHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccccccCCCCccccccccCCC
Q 006507 179 VAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPT 258 (642)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~W~~~~~~~ 258 (642)
++++...+ .-+..++.+..|++++||+||+||.+|..+. ..+.....-.++|+......
T Consensus 341 KLD~YlEY----GAA~LvLLlC~y~lvAHWlACiWysIGd~ev-----------------~~~~~n~i~~dsWL~kLa~~ 399 (971)
T KOG0501|consen 341 KLDHYLEY----GAAVLVLLLCVYGLVAHWLACIWYSIGDYEV-----------------RDEMDNTIQPDSWLWKLAND 399 (971)
T ss_pred HHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhheeccchhe-----------------ecccccccccchHHHHHHhh
Confidence 77765432 1122344455778999999999999994211 00000123457898875432
Q ss_pred CcCCCCccccchhHHHHh-hcc-cccchhHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 006507 259 MIQDTTMFNFGMFQEAIQ-SGM-VEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGN 336 (642)
Q Consensus 259 ~~~~~~~~~~g~y~~~l~-~~~-~~~~~~~~~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~ 336 (642)
-.+.++|. +. .|+ +..++....|+.|+||.++.|||||+|.|.|.|+.|++|++.+|++|+++||.++|+
T Consensus 400 ---~~tpY~~~-----~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~ 471 (971)
T KOG0501|consen 400 ---IGTPYNYN-----LSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGH 471 (971)
T ss_pred ---cCCCceec-----cCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12333332 11 122 235677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHhhcccccchhhhHHHHHHHHhc
Q 006507 337 LTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLK 416 (642)
Q Consensus 337 i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~l~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~~~~~~L~ 416 (642)
++.|++++.+....|++.++.+.+||+-..+|+.|.+||.+|.--.|...+|+|.+++|.-.|+.+|.+|..|+.++...
T Consensus 472 vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFn 551 (971)
T KOG0501|consen 472 VTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFN 551 (971)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhc
Q 006507 417 KVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 496 (642)
Q Consensus 417 ~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~ 496 (642)
..|.|+-.|+..++.|+..++..+-.|||.|++.||..+.++||++|.+++...|+ ++..++.||.||+..+-
T Consensus 552 EHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE------VVAILGKGDVFGD~FWK- 624 (971)
T KOG0501|consen 552 EHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE------VVAILGKGDVFGDEFWK- 624 (971)
T ss_pred cCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc------EEEEeecCccchhHHhh-
Confidence 99999999999999999999999999999999999999999999999999987542 26999999999998652
Q ss_pred cCCCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhc
Q 006507 497 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 536 (642)
Q Consensus 497 ~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~ 536 (642)
+ . ....+.++++|++.|.+..|.++.+.++++-|
T Consensus 625 --~--~--t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFY 658 (971)
T KOG0501|consen 625 --E--N--TLGQSAANVRALTYCDLHMIKRDKLLKVLDFY 658 (971)
T ss_pred --h--h--hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHH
Confidence 1 1 22347889999999999999999999999988
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-58 Score=476.84 Aligned_cols=410 Identities=19% Similarity=0.304 Sum_probs=354.8
Q ss_pred ccCceecCCC-cc---hHHHHHHHHHHHHhhcceeeEEEEEcCCcceeeeCccceeehhhhHHHHHHHHhh----hc---
Q 006507 35 HINRIVDPRG-PF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII----YS--- 103 (642)
Q Consensus 35 ~~~~vi~P~s-~~---Wd~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~D~~f~~----f~--- 103 (642)
.....|||.. ++ |-.++.+...|++|++|++..||+-++-+ .-.|.+.|+++|++|++ |+
T Consensus 215 ~~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~Rl 285 (815)
T KOG0499|consen 215 KLPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPRL 285 (815)
T ss_pred CCCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhhh
Confidence 4467899998 55 99999999999999999999988765322 22578999999999999 32
Q ss_pred ----cCccccchhhhhhhhhhhHH--hHHHhhhcCCccchhhheeeccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 006507 104 ----SSTPHKHSRANAKKCFYLNS--FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLY 177 (642)
Q Consensus 104 ----~~~~v~d~~~Ia~~~~Ylk~--F~iDlls~lP~~~~~~~~~~~~~~~~~~~~~~~llrl~rl~~~l~rl~r~~~l~ 177 (642)
.|.+|.|.+...+ ||+++ |-+|++|++|+|++++.+ +. ..++| ++|++++...+
T Consensus 286 ~fvrgG~~ik~kndtrk--~Yl~sr~FklDllsiLPldllY~~~-----G~------~p~wR-------~~R~lK~~sF~ 345 (815)
T KOG0499|consen 286 QFVRGGDIIKDKNDTRK--HYLTSRKFKLDLLSILPLDLLYLFF-----GF------NPMWR-------ANRMLKYTSFF 345 (815)
T ss_pred eeeeCceEEEechHHHH--HHHHhhhhhhhHHhhhhHHHHHHHh-----cc------chhhh-------hhhHHHHHHHH
Confidence 7889999999999 99999 999999999999998854 22 23445 45555555544
Q ss_pred HHHhhccchhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccccccCCCCccccccccC
Q 006507 178 AVAESTSGILAQMKWVKSACCILIYL-LAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLC 256 (642)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~W~~~~~ 256 (642)
........++ .++++.++.+.+.|| ++.|+.||+||+.+..+ +.+.+.|+.+
T Consensus 346 e~~~~Le~i~-s~~y~~RV~rT~~YmlyilHinacvYY~~Sayq------------------------glG~~rWVyd-- 398 (815)
T KOG0499|consen 346 EFNHHLESIM-SKAYIYRVIRTTGYLLYILHINACVYYWASAYQ------------------------GLGTTRWVYD-- 398 (815)
T ss_pred HHHHHHHHHh-cchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc------------------------ccccceeEEc--
Confidence 4433333333 445666777777776 58999999999987421 5578899973
Q ss_pred CCCcCCCCccccchhHHHHhhcccccchhHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 006507 257 PTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGN 336 (642)
Q Consensus 257 ~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~ 336 (642)
+....|++|+|||+.|+||+| |...|+|..|.+|..+--+.|+++||.+||+
T Consensus 399 ---------------------------g~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQ 450 (815)
T KOG0499|consen 399 ---------------------------GEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQ 450 (815)
T ss_pred ---------------------------CCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124579999999999999999 6778999999999999999999999999999
Q ss_pred HHHHHHcccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHhhcccccchhhhHHHHHHHHhc
Q 006507 337 LTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLK 416 (642)
Q Consensus 337 i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~l~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~~~~~~L~ 416 (642)
|-.++...+..+++|+..||+...||+..++|+++|+||+.+|+|.|+.++..||.++++.||..|+.+++..++-..|.
T Consensus 451 mRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lS 530 (815)
T KOG0499|consen 451 MRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILS 530 (815)
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhc
Q 006507 417 KVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 496 (642)
Q Consensus 417 ~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~ 496 (642)
++.+|++++.+.+..++.+++.+.|.|||++++.||++.+||+|..|+|.+....+|+ .++..+.+|++|||++++
T Consensus 531 KVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~---~Vl~tL~~GsVFGEISLL- 606 (815)
T KOG0499|consen 531 KVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGT---KVLVTLKAGSVFGEISLL- 606 (815)
T ss_pred HHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCC---EEEEEecccceeeeeeee-
Confidence 9999999999999999999999999999999999999999999999999998755555 347999999999999985
Q ss_pred cCCCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhch
Q 006507 497 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 497 ~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P 537 (642)
+. ....+|+++|+|...|.+++++++|+.+++..||
T Consensus 607 ai-----gG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP 642 (815)
T KOG0499|consen 607 AI-----GGGNRRTANVVAHGFANLFVLDKKDLNEILVHYP 642 (815)
T ss_pred ee-----cCCCccchhhhhcccceeeEecHhHHHHHHHhCc
Confidence 22 2345699999999999999999999999999996
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.71 E-value=2.9e-16 Score=158.11 Aligned_cols=184 Identities=12% Similarity=0.147 Sum_probs=147.1
Q ss_pred HHHhcCCcccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeech
Q 006507 412 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 491 (642)
Q Consensus 412 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe 491 (642)
.+.++.+++|..+++++++.+....+.+.|++|+.|+++|+.++++|+|.+|.|+++..++|++.+ +..+++|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 468899999999999999999999999999999999999999999999999999999865555554 799999999999
Q ss_pred hhhhccCCCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhchhhhHHhhhhhhHHhhhchhhhhHHHhHHHHHHHH
Q 006507 492 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCR 571 (642)
Q Consensus 492 ~~l~~~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~ 571 (642)
.+++ ++ .++.++++|.++|+++.|++++|.+++.++ |.+.......+...+..
T Consensus 84 ~~~~---~~------~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~------------------p~l~~~~~~~l~~~~~~ 136 (236)
T PRK09392 84 AAVV---LD------APYLMSARTLTRSRVLMIPAELVREAMSED------------------PGFMRAVVFELAGCYRG 136 (236)
T ss_pred HHHh---CC------CCCceEEEEcCceEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHH
Confidence 8863 22 237889999999999999999999999999 44444444555566777
Q ss_pred HHhhhhhhhHHHHHhhhHhhhhhc-----CCCCCcchh--HHHHHHH------HHHHHHHhhhcCC
Q 006507 572 YKKRKLEGSLYAKENILQDQKAEA-----GGKPSKFGT--AIYATQF------FTYVRRSVKRNGG 624 (642)
Q Consensus 572 ~~~r~~~~~~~~a~ery~~~~~~~-----p~~~~~i~~--~~ias~~------~~~~~~~~~~~~~ 624 (642)
..++.......++++|+..++.+. ++....+|+ +.||+.+ ++.+++..++.|.
T Consensus 137 ~~~~~~~~~~~~~~~Rla~~Ll~~~~~~~~~~~~~i~~t~~~iA~~lG~tretvsR~l~~L~~~gl 202 (236)
T PRK09392 137 LVKSLKNQKLRSSAERLANYLLKQSLRQGGADVVTLPYEKRVLASYLGMTPENLSRAFAALASHGV 202 (236)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccccCCCcEEEeeCCHHHHHHHhCCChhHHHHHHHHHHhCCe
Confidence 778888888899999998877532 233455675 5688765 3344444555554
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.66 E-value=6.2e-15 Score=145.60 Aligned_cols=176 Identities=12% Similarity=0.129 Sum_probs=136.1
Q ss_pred ccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEec-CCeeeeeEEEecCCCCeechhhhhccCCC
Q 006507 422 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDP 500 (642)
Q Consensus 422 ~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~-~~~~~~~~l~~l~~G~~fGe~~l~~~l~~ 500 (642)
+++|+++++.++..++.+.|+||++|+.+|++++.+|+|.+|.++++..+ +|++.. +..+++|++||+..++ .
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~---~- 79 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---E- 79 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhc---c-
Confidence 57999999999999999999999999999999999999999999999743 455544 7899999999998763 2
Q ss_pred CCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhchhhhHHhhhhhhHHhhhchhhh-hHHHhHHHHHHHHHHhhhhhh
Q 006507 501 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWR-TSKACVIQAAWCRYKKRKLEG 579 (642)
Q Consensus 501 ~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P~~~l~~~~l~~~~r~~s~~~~-~~~~~~~e~~~~~~~~r~~~~ 579 (642)
+.+++.++++|.++|+++.|++++|.++++++| .+. .+.+.+.+.. ....++....
T Consensus 80 ----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p------------------~~~~~~~~~~~~~l-~~~~~~~~~~ 136 (211)
T PRK11753 80 ----EGQERSAWVRAKTACEVAEISYKKFRQLIQVNP------------------DILMALSAQMARRL-QNTSRKVGDL 136 (211)
T ss_pred ----CCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCH------------------HHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 122467899999999999999999999999994 443 3444444443 5566677788
Q ss_pred hHHHHHhhhHhhhh---hcCC-------CCCcchhHHHHHHH------HHHHHHHhhhcCCCC
Q 006507 580 SLYAKENILQDQKA---EAGG-------KPSKFGTAIYATQF------FTYVRRSVKRNGGLP 626 (642)
Q Consensus 580 ~~~~a~ery~~~~~---~~p~-------~~~~i~~~~ias~~------~~~~~~~~~~~~~~~ 626 (642)
...++++|+..++. +.|+ +..+++++.||+.+ ++.+++..++.|...
T Consensus 137 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~ 199 (211)
T PRK11753 137 AFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKMLEDQGLIS 199 (211)
T ss_pred HhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 88999999876432 2222 33478889999877 344555566666443
No 8
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.62 E-value=1.5e-14 Score=145.38 Aligned_cols=182 Identities=12% Similarity=0.088 Sum_probs=140.7
Q ss_pred hcCCcccccCcHHHHHHHHhccEE-EEecCCeEEEccCCCcceEEEEEEeEEEEEEec-CCeeeeeEEEecCCCCeechh
Q 006507 415 LKKVPMFQMMGKSILSEMCKCLKP-VLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEE 492 (642)
Q Consensus 415 L~~i~~F~~ls~~~l~~L~~~l~~-~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~-~~~~~~~~l~~l~~G~~fGe~ 492 (642)
+++.+.|.++++++++.|....+. +.|+||+.|+++||.++++|+|.+|.|+++..+ +|++.+ +.++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 445555557999999999988864 679999999999999999999999999999854 456554 6888999999986
Q ss_pred hhhccCCCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhchhhhHHhhhhhhHHhhhchhhhhHHHhHHHHHHHHH
Q 006507 493 LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRY 572 (642)
Q Consensus 493 ~l~~~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~ 572 (642)
++. .. ++..+++|+++|+++.|++++|++++.++ |.+.......+.......
T Consensus 93 ~~~---~~-------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~------------------p~~~~~~~~~~~~~~~~~ 144 (235)
T PRK11161 93 AIG---SG-------QHPSFAQALETSMVCEIPFETLDDLSGKM------------------PKLRQQIMRLMSGEIKGD 144 (235)
T ss_pred ccc---CC-------CCcceEEEeccEEEEEEEHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHH
Confidence 541 11 13458999999999999999999999999 455554455555566677
Q ss_pred HhhhhhhhHHHHHhhhHhhhhhcCC-----------CCCcchhHHHHHHH------HHHHHHHhhhcCCCC
Q 006507 573 KKRKLEGSLYAKENILQDQKAEAGG-----------KPSKFGTAIYATQF------FTYVRRSVKRNGGLP 626 (642)
Q Consensus 573 ~~r~~~~~~~~a~ery~~~~~~~p~-----------~~~~i~~~~ias~~------~~~~~~~~~~~~~~~ 626 (642)
+++...+...++++|+..++.+.++ +...+++++||+.+ ++.+++..++.|-..
T Consensus 145 ~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG~sr~tvsR~l~~l~~~g~I~ 215 (235)
T PRK11161 145 QEMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGMLA 215 (235)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCceeEccccHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 7777777888999999888776432 12457888998876 455666677777543
No 9
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.58 E-value=6.2e-15 Score=154.79 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=49.6
Q ss_pred HHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q 006507 291 YCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 347 (642)
Q Consensus 291 ~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~~~~~~ 347 (642)
.|+|||++|||||||||++|.|...++++..+++.|+++.|.-|..|.+-+......
T Consensus 380 a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 380 AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSE 436 (477)
T ss_pred chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence 799999999999999999999999999999999999999998877666555444333
No 10
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.57 E-value=6.8e-14 Score=139.84 Aligned_cols=179 Identities=17% Similarity=0.135 Sum_probs=128.4
Q ss_pred CcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEec-CCeeeeeEEEecCCCCeechhhhhccCCCCC
Q 006507 424 MGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDP 502 (642)
Q Consensus 424 ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~-~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~ 502 (642)
+.+-+..++.+..+.+.|++|++|+.+||+++++|||.+|.|+++..+ +|++.+ +..+.+|++||+.+++ ++
T Consensus 19 ~~~~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~---~~-- 91 (226)
T PRK10402 19 FKDCFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI---DK-- 91 (226)
T ss_pred hhhcCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh---cC--
Confidence 333344467888999999999999999999999999999999999743 455554 7899999999998763 22
Q ss_pred CCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhchhhhHHhhhhhhHHhhhchhhhhHHHhHHHHHHHHHHhhhhhhhHH
Q 006507 503 LSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLY 582 (642)
Q Consensus 503 ~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~ 582 (642)
.++..+++|+++|+++.+++++|.+++.++| .-+..+.+.+.++. ....++.......
T Consensus 92 ----~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p-----------------~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 149 (226)
T PRK10402 92 ----DHETKAVQAIEECWCLALPMKDCRPLLLNDA-----------------LFLRKLCKFLSHKN-YRNIVSLTQNQSF 149 (226)
T ss_pred ----CCCCccEEEeccEEEEEEEHHHHHHHHhcCH-----------------HHHHHHHHHHHHHH-HHHHHHHHHhccC
Confidence 2478899999999999999999999999995 22222333333332 3333444444556
Q ss_pred HHHhhhHhhhhhc--CCCCCcchhHHHHHHHH------HHHHHHhhhcCCCC--CCcccc
Q 006507 583 AKENILQDQKAEA--GGKPSKFGTAIYATQFF------TYVRRSVKRNGGLP--GGRVNI 632 (642)
Q Consensus 583 ~a~ery~~~~~~~--p~~~~~i~~~~ias~~~------~~~~~~~~~~~~~~--~~~~~~ 632 (642)
++++|+..++-.. ++. ...++..||+.+. +.+|...++.|... +++|.|
T Consensus 150 ~~~~Rla~~L~~~~~~~~-~~~t~~~lA~~lG~sretvsR~L~~L~~~G~I~~~~~~i~I 208 (226)
T PRK10402 150 PLENRLAAFILLTQEGDL-YHEKHTQAAEYLGVSYRHLLYVLAQFIQDGYLKKSKRGYLI 208 (226)
T ss_pred hHHHHHHHHHHhcccCCc-ccchHHHHHHHHCCcHHHHHHHHHHHHHCCCEEeeCCEEEE
Confidence 8999998877542 222 2357889998875 45666677777433 334544
No 11
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.49 E-value=6.8e-13 Score=132.98 Aligned_cols=164 Identities=12% Similarity=0.071 Sum_probs=129.6
Q ss_pred HHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEec-CCeeeeeEEEecCCCCeechhhhhccCCCCCCCCCCCc
Q 006507 431 EMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHS 509 (642)
Q Consensus 431 ~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~-~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~~~~~~~~ 509 (642)
.+....+.+.|+||++|+.+||.++++|||.+|.|+++..+ +|++.+ +..+.+|++||+.. . .++
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~------~------~~~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES------G------STH 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC------C------CcC
Confidence 45667889999999999999999999999999999999743 455544 78899999999542 1 136
Q ss_pred ceEEEEcceEEEEEEcHHHHHHHHHhchhhhHHhhhhhhHHhhhchhhhhHHHhHHHHHHHHHHhhhhhhhHHHHHhhhH
Q 006507 510 NCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQ 589 (642)
Q Consensus 510 ~~ti~A~~~~~ll~Is~~~f~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~ery~ 589 (642)
..+++|+++|+++.|++++|++++.++ |.+..+....+...+....++...+...++++|+.
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~------------------p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla 160 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATD------------------VDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVA 160 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhC------------------hHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 789999999999999999999999999 55555555566666667778888888889999998
Q ss_pred hhhhhc-------CCCCCcchhHHHHHHH------HHHHHHHhhhcCCCC
Q 006507 590 DQKAEA-------GGKPSKFGTAIYATQF------FTYVRRSVKRNGGLP 626 (642)
Q Consensus 590 ~~~~~~-------p~~~~~i~~~~ias~~------~~~~~~~~~~~~~~~ 626 (642)
+++.+. +.+...+++..||+.+ ++.+++..++.|...
T Consensus 161 ~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGisretlsR~L~~L~~~GlI~ 210 (230)
T PRK09391 161 AFLLEMDERLGGAGMMALPMSRRDIADYLGLTIETVSRALSQLQDRGLIG 210 (230)
T ss_pred HHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 876552 2234567889999887 456677778888664
No 12
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.43 E-value=2.7e-12 Score=124.79 Aligned_cols=85 Identities=15% Similarity=0.246 Sum_probs=71.0
Q ss_pred CeEEEccCCCcceEEEEEEeEEEEEEe-cCCeeeeeEEEecCCCCeechhhhhccCCCCCCCCCCCcceEEEEcceEEEE
Q 006507 444 ECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAF 522 (642)
Q Consensus 444 ge~I~~eGe~~~~lyfI~~G~v~v~~~-~~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~ti~A~~~~~ll 522 (642)
|+.|+.+||.++++|+|.+|.|+++.. ++|++.+ +..+++|++||+.+++ .+.+ .++..+++|.++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~---~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI---TGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec---cCCC----CccceEEEEecceEEE
Confidence 789999999999999999999999974 3456654 7999999999998763 2111 1245789999999999
Q ss_pred EEcHHHHHHHHHhch
Q 006507 523 AINTDDLRAIVYQYW 537 (642)
Q Consensus 523 ~Is~~~f~~ll~~~P 537 (642)
.+++++|++++.++|
T Consensus 72 ~i~~~~~~~l~~~~p 86 (193)
T TIGR03697 72 AVPIEQVEKAIEEDP 86 (193)
T ss_pred EeeHHHHHHHHHHCh
Confidence 999999999999994
No 13
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.43 E-value=8.6e-12 Score=122.65 Aligned_cols=166 Identities=16% Similarity=0.200 Sum_probs=121.5
Q ss_pred CCcccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEec-CCeeeeeEEEecCCCCeechhhhh
Q 006507 417 KVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 495 (642)
Q Consensus 417 ~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~-~~~~~~~~l~~l~~G~~fGe~~l~ 495 (642)
..+.|...+++....+....+.+.+++|+.|+.+||+++.+|+|.+|.++++..+ +|++.+ +..+++|++||+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l~ 81 (214)
T COG0664 4 ENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELALL 81 (214)
T ss_pred cccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHHh
Confidence 4456666788888888899999999999999999999999999999999999844 455544 7899999999999874
Q ss_pred ccCCCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhchhhhHHhhhhhhHHhhhchhhhhHHHhHHHHHHHHHHhh
Q 006507 496 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKR 575 (642)
Q Consensus 496 ~~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r 575 (642)
.. .++.++++|+++|+++.+++++|.+++.+. |.+.......+.+.+.....+
T Consensus 82 ---~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------p~l~~~l~~~~~~~l~~~~~~ 134 (214)
T COG0664 82 ---GG------DPRSASAVALTDVEVLEIPRKDFLELLAES------------------PKLALALLRLLARRLRQALER 134 (214)
T ss_pred ---cC------CCccceEEEcceEEEEEecHHHHHHHHhhC------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 21 147889999999999999999999998885 333333333444444555555
Q ss_pred hhhhhHHHHHhhhHhhhhhcCC-----------CCCcchhHHHHHHH
Q 006507 576 KLEGSLYAKENILQDQKAEAGG-----------KPSKFGTAIYATQF 611 (642)
Q Consensus 576 ~~~~~~~~a~ery~~~~~~~p~-----------~~~~i~~~~ias~~ 611 (642)
.......++++|....+..-.. +...++.+.+|+..
T Consensus 135 ~~~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ia~~~ 181 (214)
T COG0664 135 LSLLARKDVEERLARFLLNLGRRLGIATEDGILIPLPLTHKDLAEYL 181 (214)
T ss_pred HHHHhhccHHHHHHHHHHHHhhccCCCCCCCcEEeccCCHHHHHHHh
Confidence 5555556666666554333221 12456666666544
No 14
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.36 E-value=1.3e-11 Score=108.15 Aligned_cols=107 Identities=20% Similarity=0.406 Sum_probs=93.8
Q ss_pred ccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEec-CCeeeeeEEEecCCCCeechhhhhccC
Q 006507 420 MFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSAL 498 (642)
Q Consensus 420 ~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~-~~~~~~~~l~~l~~G~~fGe~~l~~~l 498 (642)
+|..++++.+..++..++.+.+++|+.|+.+|+.++.+|+|.+|.++++..+ +|++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 4678999999999999999999999999999999999999999999998754 344443 7889999999998763
Q ss_pred CCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhch
Q 006507 499 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 499 ~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P 537 (642)
.. .++..+++|.++|+++.|+.++|.++++++|
T Consensus 76 ~~------~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 108 (115)
T cd00038 76 GN------GPRSATVRALTDSELLVLPRSDFRRLLQEYP 108 (115)
T ss_pred cC------CCCCceEEEcCceEEEEEeHHHHHHHHHHCc
Confidence 21 2377899999999999999999999999995
No 15
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.33 E-value=1.1e-11 Score=104.39 Aligned_cols=89 Identities=22% Similarity=0.357 Sum_probs=76.9
Q ss_pred EEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhccCCCCCCCCCCCcceEEEEcce
Q 006507 439 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTN 518 (642)
Q Consensus 439 ~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~ti~A~~~ 518 (642)
+.|+||++|+++|+.++++|||.+|.++++..+.+.+.. .+..+.+|++||+.+++. .. ++..+++|.++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~---~~------~~~~~~~a~~~ 71 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ-IIFFLGPGDIFGEIELLT---GK------PSPFTVIALTD 71 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEE-EEEEEETTEEESGHHHHH---TS------BBSSEEEESSS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceee-eecceeeeccccceeecC---CC------ccEEEEEEccC
Confidence 689999999999999999999999999999865433321 368999999999998752 11 37889999999
Q ss_pred EEEEEEcHHHHHHHHHhch
Q 006507 519 VEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 519 ~~ll~Is~~~f~~ll~~~P 537 (642)
|+++.|++++|.++++++|
T Consensus 72 ~~~~~i~~~~~~~~~~~~p 90 (91)
T PF00027_consen 72 SEVLRIPREDFLQLLQQDP 90 (91)
T ss_dssp EEEEEEEHHHHHHHHHHSH
T ss_pred EEEEEEeHHHHHHHHHhCc
Confidence 9999999999999999996
No 16
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1e-13 Score=138.48 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=48.0
Q ss_pred HHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q 006507 291 YCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 347 (642)
Q Consensus 291 ~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~~~~~~ 347 (642)
.|||||++|||||||||..|.|.+.+++..++.+.|++..|.-+--|.+-+.-...+
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhr 452 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 452 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccceeec
Confidence 689999999999999999999999999999999999999888776555444333333
No 17
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.31 E-value=6.1e-11 Score=116.24 Aligned_cols=167 Identities=16% Similarity=0.190 Sum_probs=105.2
Q ss_pred ccEEEEecCCeEEEccCC--CcceEEEEEEeEEEEEEec-CCeeeeeEEEecCCCCeechhhhhccCCCCCCCCCCCcce
Q 006507 435 CLKPVLYVQECCIVKEGD--PICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNC 511 (642)
Q Consensus 435 ~l~~~~~~kge~I~~eGe--~~~~lyfI~~G~v~v~~~~-~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~ 511 (642)
.++.+.|+||++|+.+|| .++.+|+|.+|.|+++..+ +|++.+ +..+.+|++||+.+++ . .+++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~~---~-------~~~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEALA---G-------AERAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHhc---C-------CCCCc
Confidence 467889999999999999 7799999999999999844 466655 7899999999997542 1 13677
Q ss_pred EEEEcceEEEEEEcHHHHHHHHHhchhhhHHhhhhhhHHhhhchhhhhHHHhHHHHHHHHHHhhhhhhhHHHHHhhhHhh
Q 006507 512 ALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQ 591 (642)
Q Consensus 512 ti~A~~~~~ll~Is~~~f~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~ery~~~ 591 (642)
+++|+++|+++.|++++| .| .+....++... ..+....+.+.+.......+|+...+..-++ ++...
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~--~~~~~l~~~l~----~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~-~~~~~ 139 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SA--EDNLVLTQHLV----RTLARAYESIYRLVGQRLKNRIAAALLELSD-TPLAT 139 (202)
T ss_pred eEEEcCceEEEEEEHHHc------Ch--hhHHHHHHHHH----HHHHHHHHHHHHHHhCchHHHHHHHHHHHHH-HhCCC
Confidence 999999999999999987 22 12212222111 1222222222222333333444444333222 12111
Q ss_pred hhhcCCCCCcchhHHHHHHH------HHHHHHHhhhcCCCC
Q 006507 592 KAEAGGKPSKFGTAIYATQF------FTYVRRSVKRNGGLP 626 (642)
Q Consensus 592 ~~~~p~~~~~i~~~~ias~~------~~~~~~~~~~~~~~~ 626 (642)
....|.+...+++..||+.+ ++.+|.-.++.|-..
T Consensus 140 ~~~~~~~~~~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~ 180 (202)
T PRK13918 140 QEDSGETMIYATHDELAAAVGSVRETVTKVIGELSREGYIR 180 (202)
T ss_pred CCCCCeEEecCCHHHHHHHhCccHHHHHHHHHHHHHCCCEE
Confidence 22345556678899998766 344555556666554
No 18
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.26 E-value=1.1e-10 Score=102.61 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=93.6
Q ss_pred ccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEec-CCeeeeeEEEecCCCCeechhhhhccC
Q 006507 420 MFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSAL 498 (642)
Q Consensus 420 ~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~-~~~~~~~~l~~l~~G~~fGe~~l~~~l 498 (642)
+|.+++++.++.++..++.+.+++|++|+++|++++++|||.+|.++++..+ +|++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALL--- 75 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhc---
Confidence 4678999999999999999999999999999999999999999999999754 344433 7899999999998763
Q ss_pred CCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhch
Q 006507 499 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 499 ~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P 537 (642)
.. ...++..+++|.++|+++.++.+++.+.+..+|
T Consensus 76 ~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 110 (120)
T smart00100 76 TN----SRRAASATAVALELATLLRIDFRDFLQLLQENP 110 (120)
T ss_pred cC----CCcccceEEEEEeeEEEEccCHHHHHHHHHHhH
Confidence 11 112467899999999999999999999999995
No 19
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.24 E-value=2.9e-11 Score=127.51 Aligned_cols=90 Identities=17% Similarity=0.133 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH
Q 006507 284 AFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRT 363 (642)
Q Consensus 284 ~~~~~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~~m~ 363 (642)
+-+..|..|+||++.|+|||||||.+|+|-..++.+.++.++|..+||.--|.+++=+.-.-+ ++.++ ++|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq~RQ-----KHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQHRQ-----KHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HHHHH-----HHHHh
Confidence 346789999999999999999999999999999999999999999999988888876653222 22222 47778
Q ss_pred hCCCCHHHHHHHHHHHH
Q 006507 364 FEMLSQSLQQRVRNHQQ 380 (642)
Q Consensus 364 ~~~lp~~l~~rv~~y~~ 380 (642)
+++.-..|.+-.-+||.
T Consensus 338 rr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYA 354 (654)
T ss_pred hcchHHHHHHHHHHHHh
Confidence 88888888777777764
No 20
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.17 E-value=9.3e-11 Score=113.74 Aligned_cols=184 Identities=18% Similarity=0.234 Sum_probs=106.4
Q ss_pred hHHHHHHHHhh---hc---cCccccchhhhhhhhhhhHH--hHHHhhhcCCccchhhheeeccCCCCCccchhhHHHHHH
Q 006507 91 LRTIFDFFNII---YS---SSTPHKHSRANAKKCFYLNS--FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVV 162 (642)
Q Consensus 91 ~~~~~D~~f~~---f~---~~~~v~d~~~Ia~~~~Ylk~--F~iDlls~lP~~~~~~~~~~~~~~~~~~~~~~~llrl~r 162 (642)
+|.++|++|.+ .+ .|-. ++ +|+++ .++|+++++|.......... ...+.....+++|++|
T Consensus 2 ~~~~~~~~f~~e~~l~~~~~~~~-------~~--~y~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~ 69 (200)
T PF00520_consen 2 LEIIFDVIFILEIVLRFFALGFK-------RR--RYFRSWWNWFDFISVIPSIVSVILRSY---GSASAQSLLRIFRLLR 69 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCG--------G--CCCCSHHHHHHHHHHHHHCCHHCCHCS---S--HHCHCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhccH-------HH--HHhcChhhccccccccccccccccccc---ccccccceEEEEEeec
Confidence 57778888877 22 3322 77 99998 77999999998655442211 1100001223333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCccccccc
Q 006507 163 IVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCIL-IYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFH 241 (642)
Q Consensus 163 l~~~l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~~~~ 241 (642)
+.|++|+.+..+.+.+....+.. .. ..+.+++ +++++.|+.||+++.+.......|+.
T Consensus 70 ----~~R~l~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~--------------- 128 (200)
T PF00520_consen 70 ----LLRLLRLLRRFRSLRRLLRALIR-SF-PDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD--------------- 128 (200)
T ss_dssp ----HHHHHHHHHTTTSHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTS--------------------
T ss_pred ----ccccccccccccccccccccccc-cc-ccccccccccccccccccchhheecccccccccc---------------
Confidence 23444444443333322221111 11 1233333 44578899999999887432211100
Q ss_pred ccCCCCccccccccCCCCcCCCCccccchhHHHHhhcccccchhHHHHHHHHHhhhhccccccccCcccC-----chhHH
Q 006507 242 CYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTST-----HEGEN 316 (642)
Q Consensus 242 ~~~~~~~~~W~~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Y~~s~Ywai~TmttvGyGDi~p~-----~~~E~ 316 (642)
.++-. .+ .....+..+.|..|+||++.++|+.|+||+.+. +..+.
T Consensus 129 -------~~~~~--------~~---------------~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 178 (200)
T PF00520_consen 129 -------PTWDS--------EN---------------DIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAV 178 (200)
T ss_dssp ---------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHH
T ss_pred -------ccccc--------cc---------------ccccccccccccccccccccccccCCccccccccccccchhHh
Confidence 00000 00 012345678899999999999999999999887 88999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHH
Q 006507 317 LLA-SFIIIASLLLLLLVLGNL 337 (642)
Q Consensus 317 i~~-i~~~i~G~~~fa~iig~i 337 (642)
++. ++..+.+.++++.++|.|
T Consensus 179 ~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 179 IFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhHHHHHHHHHHhcC
Confidence 999 666677778889998875
No 21
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.15 E-value=1.1e-09 Score=117.00 Aligned_cols=112 Identities=14% Similarity=0.236 Sum_probs=99.2
Q ss_pred HHHhcCCcccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeech
Q 006507 412 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 491 (642)
Q Consensus 412 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe 491 (642)
.+++.++|+|..++++++++|...++...|.|||.|+..|.+.+++|+|.+|.|+++..+|. ++..+..|+.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-----v~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-----VLDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-----eeeeeccCccccc
Confidence 56889999999999999999999999999999999999999999999999999999886543 2799999999999
Q ss_pred hhhhccCCCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhch
Q 006507 492 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 492 ~~l~~~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P 537 (642)
.+++. .. + ......|.+|+.+|.|+++.|.++++++|
T Consensus 81 ~~l~~---~~-----~-~~~~~~aeedsl~y~lp~s~F~ql~~~n~ 117 (610)
T COG2905 81 SSLFT---EL-----N-KQRYMAAEEDSLCYLLPKSVFMQLMEENP 117 (610)
T ss_pred hhhcc---cC-----C-CcceeEeeccceEEecCHHHHHHHHHhCc
Confidence 98742 11 1 33467888899999999999999999995
No 22
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.15 E-value=3.5e-10 Score=123.18 Aligned_cols=113 Identities=18% Similarity=0.311 Sum_probs=98.4
Q ss_pred HHHhcCCcccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeech
Q 006507 412 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 491 (642)
Q Consensus 412 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe 491 (642)
.+.++++++|+++++++++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+++.+. .+..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~--~l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESR--PEFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcE--EEEEeCCCCEeeh
Confidence 45688999999999999999999999999999999999999999999999999999885543333 3788999999997
Q ss_pred hhhhccCCCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhch
Q 006507 492 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 492 ~~l~~~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P 537 (642)
. + .. .++..+++|.++|+++.|++++|..+....+
T Consensus 85 ~-l----~~------~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----SG------SVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----CC------CCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 5 3 11 2378899999999999999999999888764
No 23
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.14 E-value=2.1e-10 Score=94.56 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=49.2
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006507 288 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQ 342 (642)
Q Consensus 288 ~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~ 342 (642)
.|..|+||+++|+||+||||+.|.++.+++++++.+++|..+++..++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999998875
No 24
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.13 E-value=7.6e-11 Score=123.81 Aligned_cols=127 Identities=20% Similarity=0.383 Sum_probs=107.6
Q ss_pred HHHHHHhcCCcccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCe
Q 006507 409 ELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDF 488 (642)
Q Consensus 409 ~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~ 488 (642)
.-+.++|+++|+|+++|++.+..+++.++...|..|++|+++|+.++.+|+|.+|.|.+...+.+.+....+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 44678999999999999999999999999999999999999999999999999999999986554333234799999999
Q ss_pred echhhhhccCCCCCCCCCCCcceEEEEcce-EEEEEEcHHHHHHHHHhchhhhHHhhhh
Q 006507 489 WGEELATSALDPDPLSNIPHSNCALISVTN-VEAFAINTDDLRAIVYQYWQHRNHNMQP 546 (642)
Q Consensus 489 fGe~~l~~~l~~~~~~~~~~~~~ti~A~~~-~~ll~Is~~~f~~ll~~~P~~~l~~~~l 546 (642)
|||-+++. ...|++++.|.++ ++++.|+++.|.+++-.. +.+..+..
T Consensus 348 FGE~al~~---------edvRtAniia~~~gv~cl~lDresF~~liG~l--~~l~ek~~ 395 (732)
T KOG0614|consen 348 FGERALLG---------EDVRTANIIAQAPGVECLTLDRESFKKLIGDL--EELKEKDY 395 (732)
T ss_pred hhHHHhhc---------cCccchhhhccCCCceEEEecHHHHHHhcccH--HHhhhhhc
Confidence 99998751 1238899999988 999999999999999888 44444333
No 25
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.12 E-value=1e-10 Score=122.80 Aligned_cols=117 Identities=21% Similarity=0.407 Sum_probs=104.7
Q ss_pred hhHHHHHHHHhcCCcccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecC
Q 006507 405 EMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLS 484 (642)
Q Consensus 405 ~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~ 484 (642)
.=...+-.+.+..-.+++++++.++++++.+|-++.|.+|+.|++|||+++++|.+.+|.+.+.. +|+ .+..++
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~----ll~~m~ 219 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGK----LLGKMG 219 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCe----eeeccC
Confidence 34556667888888999999999999999999999999999999999999999999999999987 333 279999
Q ss_pred CCCeechhhhhccCCCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhc
Q 006507 485 TGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 536 (642)
Q Consensus 485 ~G~~fGe~~l~~~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~ 536 (642)
+|..|||.++++++ +|+++|+|+++|.+|.|+++.|+.++...
T Consensus 220 ~gtvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM~~t 262 (732)
T KOG0614|consen 220 AGTVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIMMRT 262 (732)
T ss_pred CchhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999987544 38999999999999999999999999887
No 26
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=4.6e-10 Score=113.39 Aligned_cols=110 Identities=17% Similarity=0.277 Sum_probs=97.4
Q ss_pred HHHhcCCcccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeech
Q 006507 412 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 491 (642)
Q Consensus 412 ~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe 491 (642)
.+.+++.-+|.+++++.+.++...|..+.++.|+.|++||+.++.+|+|.+|.+.++.. ++ .+..+++|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~----~v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GT----YVTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--Ce----EEeeeCCCCchhh
Confidence 45667777899999999999999999999999999999999999999999999999984 22 2689999999999
Q ss_pred hhhhccCCCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhc
Q 006507 492 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 536 (642)
Q Consensus 492 ~~l~~~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~ 536 (642)
.++.+ .+|+.+|+.|.+++.+|.|++..|..++-..
T Consensus 195 lALmy---------n~PRaATv~a~t~~klWgldr~SFrrIi~~s 230 (368)
T KOG1113|consen 195 LALMY---------NPPRAATVVAKSLKKLWGLDRTSFRRIIMKS 230 (368)
T ss_pred hHhhh---------CCCcccceeeccccceEEEeeceeEEEeecc
Confidence 99852 2359999999999999999999998877655
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.67 E-value=3.8e-08 Score=99.71 Aligned_cols=116 Identities=16% Similarity=0.261 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCCcccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCC
Q 006507 407 KSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTG 486 (642)
Q Consensus 407 ~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G 486 (642)
+..+|.+.|+++|.+..+...+...++..+.++.|++|+.|+.+|+.++.+|+|.+|.|.+....+| +.+ .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~----v~v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG----VEV-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC----eEE-Eechh
Confidence 4567889999999999999999999999999999999999999999999999999999998765444 224 99999
Q ss_pred CeechhhhhccCCCCCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhc
Q 006507 487 DFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 536 (642)
Q Consensus 487 ~~fGe~~l~~~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~ 536 (642)
++|||.+++. .. ++.+++.|.+...+..++++.|+.++.-.
T Consensus 309 dyfge~al~~---~~------pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 309 DYFGELALLK---NL------PRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred hhcchHHHHh---hc------hhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 9999998752 22 38899999999999999999999999765
No 28
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.64 E-value=2.9e-09 Score=107.81 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=47.1
Q ss_pred HHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 006507 289 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLV----LGNLTIYLQ 342 (642)
Q Consensus 289 Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~i----ig~i~~il~ 342 (642)
--.+||+.++||||.||||.+|.|...++|..++.+.|+++.|.- +.+++.|..
T Consensus 357 IPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 357 IPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred CcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHh
Confidence 347999999999999999999999999999999999999998764 466666654
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.50 E-value=1.3e-07 Score=100.25 Aligned_cols=138 Identities=15% Similarity=0.179 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHhC
Q 006507 286 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFE 365 (642)
Q Consensus 286 ~~~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~ 365 (642)
...|..|.|+-++||+||||||+...|...++|.+|+++.|..+||.-+..|..++.+.+.-.-+|+..- --++-
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-----gkkhi 360 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-----GKKHI 360 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-----CCeeE
Confidence 4568999999999999999999999999999999999999999999999999999998775444443210 00000
Q ss_pred CCCHH-HHHHHHHHHHHH-HHHhcCCC-HHHHhhcccccchhhhHHHHHHHHhcCCccccc--CcHHHHHH
Q 006507 366 MLSQS-LQQRVRNHQQYV-WQEMRGID-VENLLNNLPVNLNWEMKSELCLEVLKKVPMFQM--MGKSILSE 431 (642)
Q Consensus 366 ~lp~~-l~~rv~~y~~~~-~~~~~~~~-~~~ll~~Lp~~Lr~~i~~~~~~~~L~~i~~F~~--ls~~~l~~ 431 (642)
-+-.+ ..+.|..|++.. ++....+| |--+++..||+|--| .+++....++.+|++ +++-.+..
T Consensus 361 vvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 361 VVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred EEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhhh
Confidence 00001 112233333322 22223444 334578888887544 334555677778865 55554443
No 30
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.30 E-value=5.8e-06 Score=88.81 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=49.7
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006507 288 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYL 341 (642)
Q Consensus 288 ~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il 341 (642)
.+..|+||++.|+|||||||+.|.+...+++++++++.|..+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999998887644
No 31
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.91 E-value=4.5e-05 Score=80.01 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhhccccccccC--cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 006507 287 KKFIYCFRWGLQTVSCAGQNL--QTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTI 346 (642)
Q Consensus 287 ~~Y~~s~Ywai~TmttvGyGD--i~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~~~~~ 346 (642)
..+..+|+||+.|+||||||. ++|....-.++.++-+++|.++.|+++|-+-+=++.-..
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 457899999999999999998 678888888889999999999999999998877765543
No 32
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.90 E-value=0.00042 Score=73.05 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=77.1
Q ss_pred hHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHh
Q 006507 285 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTF 364 (642)
Q Consensus 285 ~~~~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~~m~~ 364 (642)
....|..|+|....|..++||||++|.|...+..+++.-++|++.-|.+++-++.=+ +..+--..+++||-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999998887433 333334568889988
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 006507 365 EMLSQSLQQRVRNHQQYVWQ 384 (642)
Q Consensus 365 ~~lp~~l~~rv~~y~~~~~~ 384 (642)
.++.++.++-..+=++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777777775
No 33
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.77 E-value=3.2e-05 Score=86.82 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=83.5
Q ss_pred HHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEe-cCCeeeeeEEEecCCCCeechhhhhccCCCCCCCCC
Q 006507 428 ILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNI 506 (642)
Q Consensus 428 ~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~-~~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~~~~~ 506 (642)
++..+-..+....+.+|+.++++||.++++|+|+.|.+|.... .+++... +..++.||.+|+...+ ...
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~l---t~~----- 569 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEML---TKQ----- 569 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHHh---hcC-----
Confidence 4556666778899999999999999999999999999998764 4454433 6899999999998764 222
Q ss_pred CCcceEEEEcceEEEEEEcHHHHHHHHHhch
Q 006507 507 PHSNCALISVTNVEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 507 ~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P 537 (642)
++..++.|+.|+++..|+..-|..+..+||
T Consensus 570 -~R~tTv~AvRdSelariPe~l~~~ik~ryP 599 (1158)
T KOG2968|consen 570 -PRATTVMAVRDSELARIPEGLLNFIKLRYP 599 (1158)
T ss_pred -CccceEEEEeehhhhhccHHHHHHHHHhcc
Confidence 377899999999999999999999999996
No 34
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.52 E-value=9e-05 Score=80.94 Aligned_cols=57 Identities=14% Similarity=0.347 Sum_probs=52.6
Q ss_pred HHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 006507 289 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 345 (642)
Q Consensus 289 Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~~~~ 345 (642)
+..|+|++++++||+|||+++|.|...++++|+..++|.-++..+++.++..+...-
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~ 172 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL 172 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999999999998886443
No 35
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.45 E-value=8.2e-05 Score=60.03 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=31.5
Q ss_pred cccCceecCCCcc---hHHHHHHHHHHHHhhcceeeEE
Q 006507 34 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYI 68 (642)
Q Consensus 34 ~~~~~vi~P~s~~---Wd~~~~~~~~~~~~~~Pl~~~~ 68 (642)
+...++|||.|.| ||.+++++++++++++|+.++|
T Consensus 33 ~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF 70 (77)
T PF08412_consen 33 SSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISF 70 (77)
T ss_pred cCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheE
Confidence 4567899999999 9999999999999999987654
No 36
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.44 E-value=0.0046 Score=59.90 Aligned_cols=147 Identities=13% Similarity=0.060 Sum_probs=98.1
Q ss_pred HHHHHHhccEEEEecCCeEE-EccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhccCCCCCCCCC
Q 006507 428 ILSEMCKCLKPVLYVQECCI-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNI 506 (642)
Q Consensus 428 ~l~~L~~~l~~~~~~kge~I-~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~~~~~ 506 (642)
..+.+....++..+++|..+ ..+.+..+..+++.+|.|.+.. .++- .+....+...||-... +.+.
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr-~d~l----l~~t~~aP~IlGl~~~---~~~~----- 80 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR-EENV----LIGITQAPYIMGLADG---LMKN----- 80 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe-cCCe----EEEeccCCeEeecccc---cCCC-----
Confidence 45667778888999999997 4444444679999999999954 3332 3677888889997543 1211
Q ss_pred CCcceEEEEcceEEEEEEcHHHHHHHHHhchhhhHHhhhhhhHHhhhchhhhhHHHhHHHHHHHHHHhhhhhhhHHHHHh
Q 006507 507 PHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKEN 586 (642)
Q Consensus 507 ~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~e 586 (642)
...+.++|.++|+++.++.+++.++++++ +=|+.+.+.++... .....|-..+...++.+
T Consensus 81 -~~~~~l~ae~~c~~~~i~~~~~~~iie~~------------------~LW~~~~~~l~~~~-~~l~~rd~~l~g~~sY~ 140 (207)
T PRK11832 81 -DIPYKLISEGNCTGYHLPAKQTITLIEQN------------------QLWRDAFYWLAWQN-RILELRDVQLIGHNSYE 140 (207)
T ss_pred -CceEEEEEcCccEEEEeeHHHHHHHHHHh------------------chHHHHHHHHHHHH-HHHHHHHHHHhcCcHHH
Confidence 13468999999999999999999999999 77777777666532 22333333333344444
Q ss_pred h----hHhhhhhcCCCCCcchhHHH
Q 006507 587 I----LQDQKAEAGGKPSKFGTAIY 607 (642)
Q Consensus 587 r----y~~~~~~~p~~~~~i~~~~i 607 (642)
- ...+.+..++.-.+++...+
T Consensus 141 ~IR~~L~eL~~~~e~~R~~I~v~~Y 165 (207)
T PRK11832 141 QIRATLLSMIDWNEELRSRIGVMNY 165 (207)
T ss_pred HHHHHHHHHHhCCHHHHhhccHHHH
Confidence 2 22344444455566665544
No 37
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.21 E-value=0.022 Score=51.89 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=82.3
Q ss_pred cCcHHHHHHHHhc-cEEEEecCCeEEEccCC-CcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhccCCC
Q 006507 423 MMGKSILSEMCKC-LKPVLYVQECCIVKEGD-PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDP 500 (642)
Q Consensus 423 ~ls~~~l~~L~~~-l~~~~~~kge~I~~eGe-~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~~l~~ 500 (642)
+.|....+.++.. .+...+.+|+.-..||. +.+.+-++++|.+++... |+ .+..+.|.+|...-.+.. +.+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~----fLH~I~p~qFlDSPEW~s-~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GR----FLHYIYPYQFLDSPEWES-LRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CE----eeEeecccccccChhhhc-ccc
Confidence 5788888888877 77788999999999984 568999999999999873 33 267888888887766531 111
Q ss_pred CCCCCCCCcceEEEEcceEEEEEEcHHHHHHHHHhch
Q 006507 501 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 501 ~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~~ll~~~P 537 (642)
+ ....-..|+.|.++|..+..+++.+..++...|
T Consensus 87 -s--~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~ 120 (153)
T PF04831_consen 87 -S--EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDP 120 (153)
T ss_pred -C--CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCH
Confidence 1 122356799999999999999999999999993
No 38
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.06 E-value=0.0045 Score=70.19 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=79.7
Q ss_pred HHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecC-CeeeeeEEEecCCCCeechh-hhhccCCCCCCCCCCCc
Q 006507 432 MCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWGEE-LATSALDPDPLSNIPHS 509 (642)
Q Consensus 432 L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~-~~~~~~~l~~l~~G~~fGe~-~l~~~l~~~~~~~~~~~ 509 (642)
++.+++...+..|+++++.|+..+.+|.+.+|.+.++..++ |++.. +..+.+|+-|... +++-.+...| ...+
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSiLd~l~~~p---s~~~ 185 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSILDSLPGFP---SLSR 185 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHHHHhccCCC---cccc
Confidence 34777888899999999999999999999999999988654 44433 7889999777653 4431122222 2346
Q ss_pred ceEEEEcceEEEEEEcHHHHHHHHHhch
Q 006507 510 NCALISVTNVEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 510 ~~ti~A~~~~~ll~Is~~~f~~ll~~~P 537 (642)
+..++|.++|.+..++.+.|.++...+|
T Consensus 186 ~i~akA~t~~tv~~~p~~sF~~~~~k~P 213 (1158)
T KOG2968|consen 186 TIAAKAATDCTVARIPYTSFRESFHKNP 213 (1158)
T ss_pred eeeeeeecCceEEEeccchhhhhhccCh
Confidence 6789999999999999999999999998
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0021 Score=64.98 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=46.8
Q ss_pred HHHHHHhhhhccccccccCcccCc-------hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcccccH
Q 006507 289 FIYCFRWGLQTVSCAGQNLQTSTH-------EGEN-LLASFIIIASLLLLLLVLGNLTIYLQSGTIKL 348 (642)
Q Consensus 289 Y~~s~Ywai~TmttvGyGDi~p~~-------~~E~-i~~i~~~i~G~~~fa~iig~i~~il~~~~~~~ 348 (642)
|+.|+|+.+.|+||+|+||.++.- ..++ .++.+.+++|..+++-.++-+.-.+..++...
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~~ 254 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAED 254 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 778999999999999999987642 2333 56667788999999988888887776666543
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.00092 Score=67.57 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=44.3
Q ss_pred HHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006507 288 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLT 338 (642)
Q Consensus 288 ~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~ 338 (642)
++.-|||||.+.+||+|||-.+|.|+..++|+|+..++|+-+--..+..++
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 566899999999999999999999999999999999999866655555554
No 41
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.014 Score=60.71 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=46.1
Q ss_pred HHHHHHHhhhhccccccccC--cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q 006507 288 KFIYCFRWGLQTVSCAGQNL--QTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 347 (642)
Q Consensus 288 ~Y~~s~Ywai~TmttvGyGD--i~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~~~~~~ 347 (642)
....||-|++-|=||+|||- ++...+.-.+..++-+++|+++-|+++|.+-+=++.-.++
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKR 173 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKR 173 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 45678999999999999997 4444555566667778899999999999887666544443
No 42
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.58 E-value=0.024 Score=62.30 Aligned_cols=114 Identities=20% Similarity=0.306 Sum_probs=87.3
Q ss_pred HHHHHHHhcCCcccccCcHHHHHHHHhccEEEEe-cCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCC
Q 006507 408 SELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLY-VQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTG 486 (642)
Q Consensus 408 ~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~-~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G 486 (642)
.+...++..+.|.|.+++-....+||..|..... ..|.+++..|+.-+..+.|+.|+|++...+|.. ..+.-|
T Consensus 276 ieqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mG 349 (1283)
T KOG3542|consen 276 IEQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMG 349 (1283)
T ss_pred HHHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeecc
Confidence 3445678888999999999999999988765443 679999999999999999999999999988775 456678
Q ss_pred CeechhhhhccCCCCCCCCCCCcceEE-EEcceEEEEEEcHHHHHHHHHhc
Q 006507 487 DFWGEELATSALDPDPLSNIPHSNCAL-ISVTNVEAFAINTDDLRAIVYQY 536 (642)
Q Consensus 487 ~~fGe~~l~~~l~~~~~~~~~~~~~ti-~A~~~~~ll~Is~~~f~~ll~~~ 536 (642)
+-||...- .+. .. ..--. .-+.||+..+|...|+-.++.+.
T Consensus 350 nSFG~~PT---~dk----qy--m~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 350 NSFGAEPT---PDK----QY--MIGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred cccCCCCC---cch----hh--hhhhhheecccceEEEeehhhHHHHHHHH
Confidence 89996531 110 00 01111 34688999999999999998765
No 43
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.49 E-value=0.0059 Score=66.55 Aligned_cols=48 Identities=29% Similarity=0.299 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhhccccccccCcccCchhHH--------HHHHHHHHHHHHHHHHHH
Q 006507 287 KKFIYCFRWGLQTVSCAGQNLQTSTHEGEN--------LLASFIIIASLLLLLLVL 334 (642)
Q Consensus 287 ~~Y~~s~Ywai~TmttvGyGDi~p~~~~E~--------i~~i~~~i~G~~~fa~ii 334 (642)
--|+.|+|++++++||||+||++|.+...+ .+..+..++|....+.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 457789999999999999999999998766 678888888888887776
No 44
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=93.60 E-value=0.31 Score=52.69 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=28.3
Q ss_pred HHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHH
Q 006507 290 IYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLL 330 (642)
Q Consensus 290 ~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~f 330 (642)
..|+|+.++|.+||||||..|.--.-.++..+++.++.++.
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~i 259 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLI 259 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhcc
Confidence 37899999999999999999865444444444444444433
No 45
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.46 E-value=0.53 Score=54.44 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=26.4
Q ss_pred cccCceecCCCcc------------hHHHHHHHHHHHHhhccee
Q 006507 34 NHINRIVDPRGPF------------WNWIWLAVRIISTSLDPLF 65 (642)
Q Consensus 34 ~~~~~vi~P~s~~------------Wd~~~~~~~~~~~~~~Pl~ 65 (642)
.|...++.|+++| +|.++++++..+++++.+.
T Consensus 1101 ~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale 1144 (1956)
T KOG2302|consen 1101 LWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE 1144 (1956)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc
Confidence 3667899999987 8989999999998887653
No 46
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=92.06 E-value=0.25 Score=54.62 Aligned_cols=104 Identities=13% Similarity=0.201 Sum_probs=80.3
Q ss_pred cccchhhhHHHHHHHHhcCCcccccCcHHHHHHHHhccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeee
Q 006507 399 PVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSV 478 (642)
Q Consensus 399 p~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~ 478 (642)
|+.|+.-....--.+.|++...|.++-...++.++...+...++.+.++++.|+++...|++++|.|-+..
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g--------- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG--------- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec---------
Confidence 56666665554445578888899999999999999999999999999999999999999999999986632
Q ss_pred EEEecCCCCeechhhhhccCCCCCCCCCCCcceEEEEcceEEEEEEc
Q 006507 479 FKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAIN 525 (642)
Q Consensus 479 ~l~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~ti~A~~~~~ll~Is 525 (642)
..+-|-.+||-.. +..++.++-.+++++..+++
T Consensus 94 --qi~mp~~~fgkr~------------g~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKRT------------GQNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred --ceecCcccccccc------------ccccccceeeecccceeeee
Confidence 1223445666542 11267788888888888884
No 47
>PLN03223 Polycystin cation channel protein; Provisional
Probab=76.04 E-value=35 Score=42.03 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 006507 317 LLASFIIIASLLLLLLVLGNLTIYLQSG 344 (642)
Q Consensus 317 i~~i~~~i~G~~~fa~iig~i~~il~~~ 344 (642)
.|..+++++..++.-.+|+.|...++..
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666656666655555543
No 48
>COG4709 Predicted membrane protein [Function unknown]
Probab=74.06 E-value=12 Score=35.58 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cCCCHHHHhhcc--cccchhhhHHHHHHHHhcCCcccccCc
Q 006507 353 SKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEM--RGIDVENLLNNL--PVNLNWEMKSELCLEVLKKVPMFQMMG 425 (642)
Q Consensus 353 ~~~~~i~~~m~~~~lp~~l~~rv~~y~~~~~~~~--~~~~~~~ll~~L--p~~Lr~~i~~~~~~~~L~~i~~F~~ls 425 (642)
+-++++++|+ +++|++.++.+..+|+-.+.+. .|.+|+|+.++| |.++-.|+..+.-.+..+.-|-+++.+
T Consensus 5 efL~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~ 79 (195)
T COG4709 5 EFLNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVR 79 (195)
T ss_pred HHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchH
Confidence 4467888888 5899999999999999888764 467799999998 555556665554333333333333333
No 49
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=71.12 E-value=8.7 Score=29.87 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=32.9
Q ss_pred EEecCCeEEEccCCCcc-eEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeec
Q 006507 439 VLYVQECCIVKEGDPIC-EMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 490 (642)
Q Consensus 439 ~~~~kge~I~~eGe~~~-~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fG 490 (642)
..++||+..-..-.... ++++|++|.+.+.. ++ + ...+.+|+.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~-~-----~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-DG-E-----RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE-TT-E-----EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE-cc-E-----EeEccCCEEEE
Confidence 46788887665555555 99999999999883 43 3 36677888764
No 50
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=69.74 E-value=9 Score=34.75 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHh
Q 006507 285 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTF 364 (642)
Q Consensus 285 ~~~~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~~m~~ 364 (642)
.......++++.+.+++. +-++..|.+...|++.+++++.+.++.++..|++++.+...... ..++.+++..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~-----~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKYE-----PPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-----SS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcC-----CCCCCHHHHHHC
Confidence 345666788888888876 55678999999999999999999999999999999998754322 224445555544
Q ss_pred C
Q 006507 365 E 365 (642)
Q Consensus 365 ~ 365 (642)
.
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 51
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=66.78 E-value=35 Score=25.86 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccH---HHHHHHHHHHHHHHHh
Q 006507 315 ENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKL---EEIKSKAREIEQWRTF 364 (642)
Q Consensus 315 E~i~~i~~~i~G~~~fa~iig~i~~il~~~~~~~---~~~~~~~~~i~~~m~~ 364 (642)
..++.+.+.++-+++++..-+-+-.++++.+.+. .+.++|+|++-+.+.+
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHcc
Confidence 3455553333333333332344556666544433 3688999999887754
No 52
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=66.75 E-value=25 Score=33.52 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcCCCHHHHhhcc--cccchhhhHHH
Q 006507 353 SKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQE--MRGIDVENLLNNL--PVNLNWEMKSE 409 (642)
Q Consensus 353 ~~~~~i~~~m~~~~lp~~l~~rv~~y~~~~~~~--~~~~~~~~ll~~L--p~~Lr~~i~~~ 409 (642)
+=+++++++++ ++|++-++++.+||+-..++ ..|.+|+++.++| |..+-+++..+
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 44677888886 59999999999999988876 3467899999998 55565555544
No 53
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=63.79 E-value=38 Score=30.29 Aligned_cols=69 Identities=7% Similarity=0.028 Sum_probs=43.0
Q ss_pred EEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhccCCCCCCCCCCCcceEEEEc
Q 006507 437 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 516 (642)
Q Consensus 437 ~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~ti~A~ 516 (642)
....++||...-.--....++++|++|.+.+...++++ ...+.+||.+---+ + ....+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~-----------~---~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDK-----------H---DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECC-----------C---CcEEEEcC
Confidence 34567888754322122247999999999987333244 36788999875332 1 23355555
Q ss_pred ceEEEEEE
Q 006507 517 TNVEAFAI 524 (642)
Q Consensus 517 ~~~~ll~I 524 (642)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 88888776
No 54
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=57.95 E-value=1.5e+02 Score=34.67 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=52.3
Q ss_pred ccccccCcccCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccH-HHHHHHHHHHHHHHHhCCCCHHHHH
Q 006507 301 SCAGQNLQTSTHEG------ENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKL-EEIKSKAREIEQWRTFEMLSQSLQQ 373 (642)
Q Consensus 301 ttvGyGDi~p~~~~------E~i~~i~~~i~G~~~fa~iig~i~~il~~~~~~~-~~~~~~~~~i~~~m~~~~lp~~l~~ 373 (642)
.|+|+||....... -.+|.+++.++.+.++-.+|+.|++...+..... .+.+.+... .-.|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~-~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAA-TILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHH-HHHHHHhcCCHHHHH
Confidence 58999997543322 3456667777777778888888888887776655 556555433 345667999999988
Q ss_pred HHHH
Q 006507 374 RVRN 377 (642)
Q Consensus 374 rv~~ 377 (642)
+-+.
T Consensus 680 ~~~~ 683 (782)
T KOG3676|consen 680 RFRL 683 (782)
T ss_pred HHhh
Confidence 8443
No 55
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=57.31 E-value=20 Score=28.78 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=28.1
Q ss_pred cCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeec
Q 006507 442 VQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 490 (642)
Q Consensus 442 ~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fG 490 (642)
.||..=..-.. ++..+|++|.+.+... +|. ...+.+||.|-
T Consensus 15 ~pg~~~~~~~~--~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 15 TPGKFPWPYPE--DEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp ECEEEEEEESS--EEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred CCceeEeeCCC--CEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 45554333322 7888999999999875 444 26778998874
No 56
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=55.39 E-value=28 Score=32.48 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=43.2
Q ss_pred EccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhccCCCCCCCCCCCcceEEEEcceEEEEEEcHH
Q 006507 448 VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTD 527 (642)
Q Consensus 448 ~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~ 527 (642)
....+ .++++++++|.+.+...++|+.. ...+.+||+|=.-. + -+.+-++.++|.++.|.+.
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~flvP~-----------g---vpHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFLLPP-----------H---VPHSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEEeCC-----------C---CCcccccCCCcEEEEEEeC
Confidence 44433 78999999999999876665422 36789999884221 1 2234456688888888776
Q ss_pred HH
Q 006507 528 DL 529 (642)
Q Consensus 528 ~f 529 (642)
.-
T Consensus 105 r~ 106 (159)
T TIGR03037 105 RP 106 (159)
T ss_pred CC
Confidence 43
No 57
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=48.79 E-value=37 Score=32.22 Aligned_cols=62 Identities=15% Similarity=0.272 Sum_probs=42.3
Q ss_pred CCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhccCCCCCCCCCCCcceEEEEcceEEEEEEcHHHHH
Q 006507 452 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLR 530 (642)
Q Consensus 452 e~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~ti~A~~~~~ll~Is~~~f~ 530 (642)
+..++++++++|.+.+...++|+.. ...+.+|++|=--. +.+ .+-++.++|..+.+.+..-.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fllP~-----------gvp---HsP~r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLLPP-----------HVP---HSPQREAGSIGLVIERKRPE 113 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEeCC-----------CCC---cCCccCCCeEEEEEEeCCCC
Confidence 4578999999999999887666422 36788999884221 112 23355688888888765443
No 58
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=40.01 E-value=93 Score=27.69 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=35.4
Q ss_pred hccEEEEecCCeEE-EccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeec
Q 006507 434 KCLKPVLYVQECCI-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 490 (642)
Q Consensus 434 ~~l~~~~~~kge~I-~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fG 490 (642)
.......+++|+-+ .+--...++.|+|++|...+... ++ ...+++|+.+=
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~~ 86 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSVY 86 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEEE
Confidence 34566677888875 44445578999999999999874 33 25667887753
No 59
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=38.05 E-value=69 Score=21.53 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 006507 354 KAREIEQWRTFEMLS-----QSLQQRVRNHQ 379 (642)
Q Consensus 354 ~~~~i~~~m~~~~lp-----~~l~~rv~~y~ 379 (642)
++.++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 456788999999998 67888888774
No 60
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=37.94 E-value=1.5e+02 Score=29.41 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=45.3
Q ss_pred cEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhh-ccCCCCC---CCCCCCcce
Q 006507 436 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELAT-SALDPDP---LSNIPHSNC 511 (642)
Q Consensus 436 l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~-~~l~~~~---~~~~~~~~~ 511 (642)
++...+.+|+..-.+-...+....++.|.+.+... |+.||++.-- ..++.+| ..--..+.+
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~---------------g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~ 95 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAH---------------GSTFGEIGTRMSVFERKPPDSVYVPAGSAF 95 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeec---------------cchHhhcccccccccCCCCCeEEecCCceE
Confidence 55667889998766666566677778999987652 2223332100 0011111 000013678
Q ss_pred EEEEcceEEEEEEcHHH
Q 006507 512 ALISVTNVEAFAINTDD 528 (642)
Q Consensus 512 ti~A~~~~~ll~Is~~~ 528 (642)
++.|.+++++..-+...
T Consensus 96 ~vtA~t~~~vAvC~AP~ 112 (270)
T COG3718 96 SVTATTDLEVAVCSAPG 112 (270)
T ss_pred EEEeecceEEEEEeCCC
Confidence 99999999888766544
No 61
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=36.14 E-value=36 Score=29.54 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh----------cCCCHHHHhhcccccchhhhHHH
Q 006507 365 EMLSQSLQQRVRNHQQYVWQEM----------RGIDVENLLNNLPVNLNWEMKSE 409 (642)
Q Consensus 365 ~~lp~~l~~rv~~y~~~~~~~~----------~~~~~~~ll~~Lp~~Lr~~i~~~ 409 (642)
.-||++++..|...+.-.-... ...|.-.++..||+.||.+|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 4689999999999987654322 23345789999999999998754
No 62
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=34.89 E-value=92 Score=27.65 Aligned_cols=50 Identities=20% Similarity=0.192 Sum_probs=38.7
Q ss_pred cEEEEecCCeEEEccCCC-cceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechh
Q 006507 436 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 492 (642)
Q Consensus 436 l~~~~~~kge~I~~eGe~-~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~ 492 (642)
.....+.||..+-.--.+ .+...+|++|.+++... ++ ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEEC
Confidence 446678899888776666 67899999999998875 33 3677899998654
No 63
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=32.78 E-value=9.4e+02 Score=28.86 Aligned_cols=41 Identities=10% Similarity=0.185 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCHHHHhhcccccchhhhHHHH
Q 006507 365 EMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSEL 410 (642)
Q Consensus 365 ~~lp~~l~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~~ 410 (642)
.++|++|+.+|..++.... +..-.+++.+++....++...+
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~ 397 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKM 397 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhh
Confidence 4789999999987764322 2233567777777777766665
No 64
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=32.74 E-value=1.7e+02 Score=28.34 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=28.5
Q ss_pred cCcHHHHHHHHhccEEEE--ecCCeEEEccCCCcc
Q 006507 423 MMGKSILSEMCKCLKPVL--YVQECCIVKEGDPIC 455 (642)
Q Consensus 423 ~ls~~~l~~L~~~l~~~~--~~kge~I~~eGe~~~ 455 (642)
..++...++..+...+.. +++|+.|+++|++.+
T Consensus 173 ~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 173 EATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 466777888889999999 999999999999764
No 65
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=32.19 E-value=1.3e+02 Score=32.25 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhhhhccccccccCc--ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 006507 284 AFKKKFIYCFRWGLQTVSCAGQNLQ--TSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 345 (642)
Q Consensus 284 ~~~~~Y~~s~Ywai~TmttvGyGDi--~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~~~~ 345 (642)
...--|+.+|=+++..+.+++-++. .|. .-..+++++.+++.+++-|.|..++..++--+
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~~p~--~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGSVPR--LSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3455688899899988888877765 443 23777888888888889999988887776433
No 66
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=31.05 E-value=1.4e+02 Score=27.17 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=36.6
Q ss_pred ccEEEEecCCeEEEccCCC-cceEEEEEEeEEEEEEecC-CeeeeeEEEecCCCCeech
Q 006507 435 CLKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWGE 491 (642)
Q Consensus 435 ~l~~~~~~kge~I~~eGe~-~~~lyfI~~G~v~v~~~~~-~~~~~~~l~~l~~G~~fGe 491 (642)
.+....+.||...-..-.. .+++++|++|...+...+. +.+.. ...+.+||.+-.
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~i 87 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFVV 87 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEEE
Confidence 3445567888876544333 5689999999999886432 22222 477899998753
No 67
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=29.17 E-value=3.6e+02 Score=24.86 Aligned_cols=12 Identities=17% Similarity=-0.141 Sum_probs=4.7
Q ss_pred HHHHhhhhcccc
Q 006507 291 YCFRWGLQTVSC 302 (642)
Q Consensus 291 ~s~Ywai~Tmtt 302 (642)
.++-.|+.++.+
T Consensus 144 ~~~~~s~~~~~~ 155 (200)
T PF00520_consen 144 DSFGESLYWLFQ 155 (200)
T ss_dssp SSHHHHHHHHHH
T ss_pred cccccccccccc
Confidence 333344443333
No 68
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=28.70 E-value=1e+02 Score=19.28 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=16.3
Q ss_pred hhHHHHHhhhHhhhhhcCC
Q 006507 579 GSLYAKENILQDQKAEAGG 597 (642)
Q Consensus 579 ~~~~~a~ery~~~~~~~p~ 597 (642)
.....|.+-|+.+++++|+
T Consensus 14 g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 14 GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHHCcC
Confidence 4567899999999999997
No 69
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=28.14 E-value=54 Score=36.72 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=54.4
Q ss_pred HHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHhCCCC
Q 006507 291 YCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLS 368 (642)
Q Consensus 291 ~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp 368 (642)
.|+||++.....-|- ||.|.+...++...++-++..++.+.-.+++++.+. .+.+..-++.+++..++..+-
T Consensus 598 NsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQteIa 669 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTEIA 669 (897)
T ss_pred HHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhcceee
Confidence 699999998887774 999999999999999988888888777788887764 233444455566666665553
No 70
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=27.51 E-value=3.7e+02 Score=22.57 Aligned_cols=38 Identities=11% Similarity=-0.047 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHccc---ccHHHHHHHHHHHHHHHHhCCCC
Q 006507 331 LLVLGNLTIYLQSGT---IKLEEIKSKAREIEQWRTFEMLS 368 (642)
Q Consensus 331 a~iig~i~~il~~~~---~~~~~~~~~~~~i~~~m~~~~lp 368 (642)
+|..+.++-=+...+ ...++.++++++.++.++++++.
T Consensus 50 ~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 50 CYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 455556655554444 55677888888899999988864
No 71
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=27.14 E-value=2.6e+02 Score=25.02 Aligned_cols=45 Identities=11% Similarity=0.131 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHhhcccc
Q 006507 355 AREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPV 400 (642)
Q Consensus 355 ~~~i~~~m~~~~lp~~l~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~ 400 (642)
.++++.|-.++-+=+-|+..=.+++--.|.++.. .|.+++++.|.
T Consensus 62 r~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~e-eEaeiMKdVPg 106 (146)
T KOG3300|consen 62 RLKIEDYAARNAILPILQAERDRRFLSELRKNLE-EEAEIMKDVPG 106 (146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH-HHHHHHccCCC
Confidence 3445566666666666766666666556654222 35678888874
No 72
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=26.05 E-value=1.2e+02 Score=28.95 Aligned_cols=52 Identities=8% Similarity=0.059 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHH
Q 006507 284 AFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLG 335 (642)
Q Consensus 284 ~~~~~Y~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig 335 (642)
+....|..=+|+|++.-||-+-.|+.+.+..=|-....=.+++.++.+.+++
T Consensus 128 ~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 128 DWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345688899999999999999999999998888888888888888877764
No 73
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=24.38 E-value=1.4e+02 Score=24.64 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=43.0
Q ss_pred ccEEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhccCCCCCCCCCCCcceEEE
Q 006507 435 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 514 (642)
Q Consensus 435 ~l~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~ti~ 514 (642)
......+.||..+=.-...+.+..||++|.+.. +++ .+.+|++.=.-. .+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~--------~~~~G~~~~~p~--------------g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG--------RYGAGDWLRLPP--------------GSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC--------EEETTEEEEE-T--------------TEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc--------cCCCCeEEEeCC--------------CCccccC
Confidence 456677889988877777778888999999862 222 235777764321 2556778
Q ss_pred EcceEEEEE
Q 006507 515 SVTNVEAFA 523 (642)
Q Consensus 515 A~~~~~ll~ 523 (642)
+.++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 889998875
No 74
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=22.72 E-value=1.9e+02 Score=32.77 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=42.1
Q ss_pred HHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006507 290 IYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQ 342 (642)
Q Consensus 290 ~~s~Ywai~TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~il~ 342 (642)
-.++||+-..+..-|-|.-+|.+..-++..+++.=+.+++-|.-.+++++.+.
T Consensus 615 ssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 615 SSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 35777777777777888889999999999999888888777777777776653
No 75
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=22.51 E-value=2.3e+02 Score=29.95 Aligned_cols=76 Identities=9% Similarity=0.030 Sum_probs=53.3
Q ss_pred EEecCCeEEEccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeechhhhhccCCCCCCCCCCCcceEEEEcce
Q 006507 439 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTN 518 (642)
Q Consensus 439 ~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~ti~A~~~ 518 (642)
+.+++|..--..-..+..+|+|.+|.-.+.. |++ ....++||+|-.-++ ...+..+.++
T Consensus 255 q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i--g~~-----~~~W~~gD~f~vPsW--------------~~~~h~a~~d 313 (335)
T TIGR02272 255 QLLPKGFRTATYRSTDATVFCVVEGRGQVRI--GDA-----VFRFSPKDVFVVPSW--------------HPVRFEASDD 313 (335)
T ss_pred hccCCCCCCCCccccccEEEEEEeCeEEEEE--CCE-----EEEecCCCEEEECCC--------------CcEecccCCC
Confidence 4566777666666778899999999887766 333 256889999976543 2234455678
Q ss_pred EEEEEEcHHHHHHHHHh
Q 006507 519 VEAFAINTDDLRAIVYQ 535 (642)
Q Consensus 519 ~~ll~Is~~~f~~ll~~ 535 (642)
+.++.++-.-+++-+.-
T Consensus 314 a~Lf~~~D~Pll~~LGl 330 (335)
T TIGR02272 314 AVLFSFSDRPVQQKLGL 330 (335)
T ss_pred eEEEEecCHHHHHHhcc
Confidence 88998887777665543
No 76
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=22.47 E-value=2.2e+02 Score=30.57 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=34.2
Q ss_pred EEEEecCCeEEEccCCCcceEEEEEEeEEEEEEecC-CeeeeeEEEecCCCCeec
Q 006507 437 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWG 490 (642)
Q Consensus 437 ~~~~~~kge~I~~eGe~~~~lyfI~~G~v~v~~~~~-~~~~~~~l~~l~~G~~fG 490 (642)
....+.||...-.--....++.+|++|.+++...+. ++.. ...+.+||.+-
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~---~~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY---IDDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE---EeEECCCCEEE
Confidence 345677777543222345689999999999988553 4422 34799999874
No 77
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=22.45 E-value=1.3e+02 Score=22.88 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=20.0
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHH
Q 006507 363 TFEMLSQSLQQRVRNHQQYVWQE 385 (642)
Q Consensus 363 ~~~~lp~~l~~rv~~y~~~~~~~ 385 (642)
-..++|++|++.|..|.+|.-++
T Consensus 7 lfqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 7 LFQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHHCcHHHHHHHHHHHHHHHHH
Confidence 34689999999999999998875
No 78
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.36 E-value=4.1e+02 Score=34.34 Aligned_cols=32 Identities=9% Similarity=-0.019 Sum_probs=24.4
Q ss_pred ccccccccCcccCchhHHHHHHHHHHHHHHHH
Q 006507 299 TVSCAGQNLQTSTHEGENLLASFIIIASLLLL 330 (642)
Q Consensus 299 TmttvGyGDi~p~~~~E~i~~i~~~i~G~~~f 330 (642)
--+.++-|.+.+.+....+|-++..++|.++.
T Consensus 1061 ds~~~~~~p~~~~~~~~~~ffvifii~~~ff~ 1092 (1592)
T KOG2301|consen 1061 DSRGVNAQPILESNLYMYLFFVIFIIIGSFFT 1092 (1592)
T ss_pred hhhccCcCCcccccccceeehhhhhhHHhhhh
Confidence 34667777888888888888888888877765
No 79
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=21.91 E-value=3.1e+02 Score=19.82 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Q 006507 318 LASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAR 356 (642)
Q Consensus 318 ~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~ 356 (642)
++.+..+..++....+.+.+.++-.+...+..++|..-+
T Consensus 9 ~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~ 47 (53)
T PF01484_consen 9 VSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISD 47 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455556666665555555555555443
No 80
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=21.82 E-value=3.8e+02 Score=25.90 Aligned_cols=53 Identities=8% Similarity=-0.040 Sum_probs=32.7
Q ss_pred cEEEEecCCeEE---------EccCCCcceEEEEEEeEEEEEEecCCeeeeeEEEecCCCCeec
Q 006507 436 LKPVLYVQECCI---------VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 490 (642)
Q Consensus 436 l~~~~~~kge~I---------~~eGe~~~~lyfI~~G~v~v~~~~~~~~~~~~l~~l~~G~~fG 490 (642)
+-...+.||... +++.....++|++++|...+...+...+. ....+.+|+.+-
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~--~~~~v~pGd~v~ 131 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEA--RWIEMEPGTVVY 131 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcE--EEEEECCCCEEE
Confidence 344556777742 23333345999999999988764332111 146788998864
No 81
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=21.81 E-value=3.3e+02 Score=24.97 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc----------c---ccHHHHHHHHHHHHHHHHh
Q 006507 320 SFIIIASLLLLLLVLGNLTIYLQSG----------T---IKLEEIKSKAREIEQWRTF 364 (642)
Q Consensus 320 i~~~i~G~~~fa~iig~i~~il~~~----------~---~~~~~~~~~~~~i~~~m~~ 364 (642)
+++.++|+.++|++++-+.+.-... + ....+|+.+++...+.++.
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 5778999999999997664322211 1 2367899888888866653
No 82
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=21.64 E-value=2.9e+02 Score=26.63 Aligned_cols=67 Identities=7% Similarity=0.020 Sum_probs=40.3
Q ss_pred HHHHHHHHHhchhhhHHhhhhhhHHhhhchhhhhHHHhHHHHHHHHHHhhhhhhhHHHHHhhhHhhhhhcCCCCC
Q 006507 526 TDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAEAGGKPS 600 (642)
Q Consensus 526 ~~~f~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~~~~~~~a~ery~~~~~~~p~~~~ 600 (642)
...|+.++++||+.......- .....+...+.+..+....-.........|-.||+..++++|+...
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~--------~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAK--------KRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHH--------HHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHCcCchHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence 568899999999533221110 1122223455555555444444455667899999999999998764
No 83
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.27 E-value=3.6e+02 Score=31.70 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=32.7
Q ss_pred hcccccchhhhHHHHHHHHhc-----CCcccccCcHHHHHHHHhccE
Q 006507 396 NNLPVNLNWEMKSELCLEVLK-----KVPMFQMMGKSILSEMCKCLK 437 (642)
Q Consensus 396 ~~Lp~~Lr~~i~~~~~~~~L~-----~i~~F~~ls~~~l~~L~~~l~ 437 (642)
++||+.||+.+..+....+.. .-.+++++|++..++|+.++-
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 469999999999888766654 335678899988888877663
No 84
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.02 E-value=6.4e+02 Score=32.68 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=11.5
Q ss_pred hhhHH--hHHHhhhcCCccc
Q 006507 119 FYLNS--FLKDLLSCLPIPQ 136 (642)
Q Consensus 119 ~Ylk~--F~iDlls~lP~~~ 136 (642)
.|.++ ..+|.+-+. +++
T Consensus 501 ~yF~~~~n~fD~~iv~-l~~ 519 (1592)
T KOG2301|consen 501 NYFRRGWNIFDLIIVL-LSL 519 (1592)
T ss_pred HHHhhhcchheEEEEe-hhh
Confidence 56665 788887776 443
Done!