Query 006507
Match_columns 642
No_of_seqs 361 out of 3161
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 18:20:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006507.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2135-2139//hhsearch_pdb/006507hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 1.0 1 1 264.1 10.2 329 40-537 3-335 (355)
2 3ukn_A Novel protein similar t 1.0 1 1 235.8 14.0 186 338-537 1-186 (212)
3 3bpz_A Potassium/sodium hyperp 1.0 1 1 228.6 22.0 180 342-537 2-181 (202)
4 2ptm_A Hyperpolarization-activ 1.0 1 1 225.5 21.3 181 342-537 1-181 (198)
5 1orq_C Potassium channel; volt 1.0 1 1 161.8 12.1 208 44-343 7-220 (223)
6 3dn7_A Cyclic nucleotide bindi 1.0 1 1 157.4 16.0 174 412-614 6-181 (194)
7 2r9r_B Paddle chimera voltage 1.0 1 1 153.6 7.3 288 37-410 169-488 (514)
8 4ev0_A Transcription regulator 1.0 1 1 146.1 19.7 181 415-624 1-192 (216)
9 3fx3_A Cyclic nucleotide-bindi 1.0 1 1 144.2 17.6 188 408-624 6-207 (237)
10 3d0s_A Transcriptional regulat 1.0 1 1 144.1 13.7 185 411-624 4-206 (227)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=1.00 E-value=1 Score=264.10 Aligned_cols=329 Identities=15% Similarity=0.175 Sum_probs=216.1
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEECCCCEEEHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHH
Q ss_conf 26999304799999999987302406688888487512550765322123357898887765-20695312615664023
Q 006507 40 VDPRGPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-YSSSTPHKHSRANAKKC 118 (642)
Q Consensus 40 i~P~s~~Wd~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~f~~-f~~~~~v~d~~~Ia~~~ 118 (642)
..|.|+..+.+++++++.++++.-+.-+ + . ........+..++.++=.+|.+ +-- +....++ ..
T Consensus 3 ~~p~s~~f~~~~~~~i~ls~~~~~~~t~-----~---~--~~~~~~~~~~~~~~~~~~~f~~e~~~-r~~~~~~--~~-- 67 (355)
T 3beh_A 3 VLPFLRIYAPLNAVLAAPGLLAVAALTI-----P---D--MSGRSRLALAALLAVIWGAYLLQLAA-TLLKRRA--GV-- 67 (355)
T ss_dssp ----CCSSSSHHHHHHHHHHHHHHHHTS-----S---S--CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCS--CS--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCC-----C---C--HHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCC--CC--
T ss_conf 8843679999999999999999999736-----1---3--32568999999896777999999989-0121232--34--
Q ss_pred HHHHH--HHHHHHHC-CCCCCHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 03678--69876420-7721102200011678877310035899999998777899999999987410010024402899
Q 006507 119 FYLNS--FLKDLLSC-LPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKS 195 (642)
Q Consensus 119 ~Ylk~--F~iDlls~-lP~~~i~~~~~~~~~~~~~~~~~~~lLr~~~l~~yl~Rl~ri~~l~~~~~~~~~~~~~~~~~~~ 195 (642)
.|.++ .++|++++ +|+..+.. + +...++..+++| +.|+.|..+..+.+.+. +..+ ....
T Consensus 68 ~~~~~~~~i~Dl~~i~~p~~~~~~----~---~~~~~r~lr~~R-------~lrl~r~~~~~~~l~~~---l~~~-~~~l 129 (355)
T 3beh_A 68 VRDRTPKIAIDVLAVLVPLAAFLL----D---GSPDWSLYCAVW-------LLKPLRDSTFFPVLGRV---LANE-ARNL 129 (355)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHS----C---CSGGGGGGGGGG-------GSHHHHTCSSHHHHHHH---HHHT-HHHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHH----C---CCHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---HHHH-HHHH
T ss_conf 103383258799989889999983----3---503678999999-------99999988999999999---9999-9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999999999999899998855445478887410147765543103578776552233377776798765530229877
Q 006507 196 ACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAI 275 (642)
Q Consensus 196 ~~~Ll~~~l~~H~~aC~wyl~~~~~~~~cw~~~c~~~~~c~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~ 275 (642)
...+++++++.|+.||++|.+.. |.
T Consensus 130 ~~~~~~~~~~~~~~a~~~~~~e~--------------------------------~~----------------------- 154 (355)
T 3beh_A 130 IGVTTLFGVVLFAVALAAYVIER--------------------------------DI----------------------- 154 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--------------------------------TT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC--------------------------------CC-----------------------
T ss_conf 99999999999999999987536--------------------------------77-----------------------
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 30665560148788998874302033335667656744578999999999999999999999999970410299999999
Q 006507 276 QSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKA 355 (642)
Q Consensus 276 ~~~~~~~~~~~~~Y~~slywa~~tlttvGyGd~~p~~~~E~~f~i~~~i~G~~~fa~iig~i~~~l~~~~~~~~~~~~~~ 355 (642)
+++.+..|..|+||+++||||+||||++|.+..++++++++|++|++++++.+|.+.+.++.. .++
T Consensus 155 ------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~------~~~-- 220 (355)
T 3beh_A 155 ------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQE------VRR-- 220 (355)
T ss_dssp ------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH--
T ss_pred ------CCCCCCCHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH--
T ss_conf ------884322099999999864344589987889821999999999999999999999999998999------988--
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC
Q ss_conf 99999998389999899999999999999843999788862066221255677999998538910002859999999751
Q 006507 356 REIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKC 435 (642)
Q Consensus 356 ~~i~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~~l~~i~~F~~ls~~~l~~L~~~ 435 (642)
+++. ...+.++++++|+++++++++.++..
T Consensus 221 --------------------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~ 250 (355)
T 3beh_A 221 --------------------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRA 250 (355)
T ss_dssp --------------------HHHH------------------------------HHHC----------------------
T ss_pred --------------------HHHC------------------------------CCCHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf --------------------7650------------------------------15212104622112999999999985
Q ss_pred CEEEEECCCEEEECCCCCCCEEEEEEEEEEEEEEECCCEEEEEEEEECCCCCEECHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf 68899658818882699866289999757999982697323368785179982426456403899999999996308998
Q 006507 436 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 515 (642)
Q Consensus 436 l~~~~~~kge~Ii~eGe~~~~lyfI~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~s~~ti~A 515 (642)
++++.++|||.|+++||+++++|||.+|.++++..+ + ..+++|++|||.+++ .+ .++.++++|
T Consensus 251 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~------~~l~~G~~fGe~~~l---~~------~~~~~~~~A 313 (355)
T 3beh_A 251 LRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--P------VELGPGAFFGEMALI---SG------EPRSATVSA 313 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCEEEECCCCCCEEEEEEEEEEEEEECC--E------EEECCCCEEEEHHHH---CC------CCCCEEEEE
T ss_conf 368897979999928995765999996489999888--0------489899999326995---79------996169999
Q ss_pred CCEEEEEEECHHHHHHHHHHCH
Q ss_conf 1438999971998999998532
Q 006507 516 VTNVEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 516 lt~~~l~~Ls~~dl~~l~~~~P 537 (642)
.++|+++.+++++|.++++++|
T Consensus 314 ~~~~~l~~i~~~~f~~ll~~~p 335 (355)
T 3beh_A 314 ATTVSLLSLHSADFQMLCSSSP 335 (355)
T ss_dssp ----------------------
T ss_pred CCCEEEEEEEHHHHHHHHHHCH
T ss_conf 8608999985999999998798
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=1.00 E-value=1 Score=235.81 Aligned_cols=186 Identities=20% Similarity=0.367 Sum_probs=171.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99997041029999999999999998389999899999999999999843999788862066221255677999998538
Q 006507 338 TIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKK 417 (642)
Q Consensus 338 ~~~l~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~~l~~ 417 (642)
++++++++.+..+|+++++.+++||+++++|++|+.||++|++|.|..+++.|++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH-H
T ss_conf 958888778899999999999999998299999999999999999986489899999998589999999999989998-2
Q ss_pred CCCCCCCCHHHHHHHHHCCEEEEECCCEEEECCCCCCCEEEEEEEEEEEEEEECCCEEEEEEEEECCCCCEECHHHHHCC
Q ss_conf 91000285999999975168899658818882699866289999757999982697323368785179982426456403
Q 006507 418 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSA 497 (642)
Q Consensus 418 i~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGe~~~~lyfI~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~ 497 (642)
+|+|.+++++++..++..+++..|+||++|+++||+++++|||.+|.|+++. +| . .+..+++|++|||.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~~-~----~~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK-DN-T----VLAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES-SS-C----EEEEECTTCEEECSCCS--
T ss_pred CHHHHCCCHHHHHHHHHHHHEEEECCCCEEEECCCCCCEEEEEEECEEEEEE-CC-E----EEEEECCCCCCCCHHHC--
T ss_conf 5876609999999999972237839999999789856679999706999998-99-5----89994599971827760--
Q ss_pred CCCCCCCCCCCCCEEEEECCEEEEEEECHHHHHHHHHHCH
Q ss_conf 8999999999963089981438999971998999998532
Q 006507 498 LDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 498 l~~~~~~~~~~s~~ti~Alt~~~l~~Ls~~dl~~l~~~~P 537 (642)
.+. .++++++++|.++|+++.|++++|.++++++|
T Consensus 152 -~~~----~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p 186 (212)
T 3ukn_A 152 -KEQ----VIKTNANVKALTYCDLQYISLKGLREVLRLYP 186 (212)
T ss_dssp -SSS----CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred -CCC----CCCCCEEEEECCCEEEEEEEHHHHHHHHHHCH
T ss_conf -588----88852589975247999976999999999895
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=1.00 E-value=1 Score=228.57 Aligned_cols=180 Identities=18% Similarity=0.329 Sum_probs=166.8
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 70410299999999999999983899998999999999999998439997888620662212556779999985389100
Q 006507 342 QSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMF 421 (642)
Q Consensus 342 ~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~~l~~i~~F 421 (642)
++++.+..+|+++++.+++||+++++|.+|+.||++|++|.|. +++.+++++++.||+.||.++..+.+.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9987789999999999999998759999999999999999985-558789999987699999999999999999659733
Q ss_pred CCCCHHHHHHHHHCCEEEEECCCEEEECCCCCCCEEEEEEEEEEEEEEECCCEEEEEEEEECCCCCEECHHHHHCCCCCC
Q ss_conf 02859999999751688996588188826998662899997579999826973233687851799824264564038999
Q 006507 422 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPD 501 (642)
Q Consensus 422 ~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGe~~~~lyfI~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~ 501 (642)
.+++++++..++..+++..|+||+.|+++||+++++|||.+|.|+++..+ |++ ..+++|++||+.+++..
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~-g~~-----~~l~~G~~fGe~~~~~~---- 150 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG-NKE-----MKLSDGSYFGEICLLTR---- 150 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTT-SCC-----EEEETTCEECHHHHHHC----
T ss_pred HCCCHHHHHHHHHHCCCEEECCCCEEEECCCCCCEEEEEECCEEEEEECC-CEE-----EEECCCCEECCHHHHCC----
T ss_conf 13999999999995780578999889988984776999963699999789-748-----99718998432898469----
Q ss_pred CCCCCCCCCEEEEECCEEEEEEECHHHHHHHHHHCH
Q ss_conf 999999963089981438999971998999998532
Q 006507 502 PLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 502 ~~~~~~~s~~ti~Alt~~~l~~Ls~~dl~~l~~~~P 537 (642)
.++.++++|.++|+++.|++++|.++++++|
T Consensus 151 -----~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p 181 (202)
T 3bpz_A 151 -----GRRTASVRADTYCRLYSLSVDNFNEVLEEYP 181 (202)
T ss_dssp -----SBCSSEEEESSCEEEEEEEHHHHHHHHHHSG
T ss_pred -----CCCCCEEEEEEEEEEEEEEHHHHHHHHHHCH
T ss_conf -----9846289985588999988999999999897
No 4
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=1.00 E-value=1 Score=225.48 Aligned_cols=181 Identities=15% Similarity=0.317 Sum_probs=168.2
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 70410299999999999999983899998999999999999998439997888620662212556779999985389100
Q 006507 342 QSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMF 421 (642)
Q Consensus 342 ~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~~l~~i~~F 421 (642)
.+++.+..+|+++++.+++||+++++|.+|+.||++|++|.|+ +++.+|+++++.||+.||.++..+.+.++++++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f 79 (198)
T 2ptm_A 1 GAMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFF 79 (198)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9977789999999999999999759999999999999999971-667899999998399999999999999999648533
Q ss_pred CCCCHHHHHHHHHCCEEEEECCCEEEECCCCCCCEEEEEEEEEEEEEEECCCEEEEEEEEECCCCCEECHHHHHCCCCCC
Q ss_conf 02859999999751688996588188826998662899997579999826973233687851799824264564038999
Q 006507 422 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPD 501 (642)
Q Consensus 422 ~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGe~~~~lyfI~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~ 501 (642)
.+++++++..++..+++..|+||+.|+++||.++++|||.+|.|+++..+| + .+..+++|++||+.+++..
T Consensus 80 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g-~----~~~~l~~G~~fGe~~~~~~---- 150 (198)
T 2ptm_A 80 VGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDG-V----IATSLSDGSYFGEICLLTR---- 150 (198)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTS-C----EEEEECTTCEESCHHHHHS----
T ss_pred HCCCHHHHHHHHHHCCCEEECCCCEEEECCCCCCEEEEEEECEEEEEECCC-E----EEEEECCCCEECHHHHCCC----
T ss_conf 049999999999963500429998899779867679999838899996599-5----9988469989411887079----
Q ss_pred CCCCCCCCCEEEEECCEEEEEEECHHHHHHHHHHCH
Q ss_conf 999999963089981438999971998999998532
Q 006507 502 PLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 537 (642)
Q Consensus 502 ~~~~~~~s~~ti~Alt~~~l~~Ls~~dl~~l~~~~P 537 (642)
.++.++++|.++|+++.|++++|.++++++|
T Consensus 151 -----~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p 181 (198)
T 2ptm_A 151 -----ERRVASVKCETYCTLFSLSVQHFNQVLDEFP 181 (198)
T ss_dssp -----SCCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred -----CCCCEEEEEEEEEEEEEEEHHHHHHHHHHCH
T ss_conf -----9601089992688999976999999999895
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=1.00 E-value=1 Score=161.85 Aligned_cols=208 Identities=12% Similarity=0.114 Sum_probs=131.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCEEEECCCCEEEHHHHHHHHHHHHHH---HC--CCCCCCCHHHHHHHH
Q ss_conf 9304799999999987302406688888487512550765322123357898887765---20--695312615664023
Q 006507 44 GPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII---YS--SSTPHKHSRANAKKC 118 (642)
Q Consensus 44 s~~Wd~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~f~~---f~--~~~~v~d~~~Ia~~~ 118 (642)
++.||.+++++.++++...++..+. ..+......+..+|.+++++|.+ .+ ... ..+
T Consensus 7 ~~~f~~~i~~lil~~~~~~~~~~~~----------~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------~~~-- 67 (223)
T 1orq_C 7 HPLVELGVSYAALLSVIVVVVECTM----------QLSGEYLVRLYLVDLILVIILWADYAYRAYKSG-------DPA-- 67 (223)
T ss_dssp SHHHHTHHHHHHHHHHHHHHHHHHH----------HHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS-------CHH--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CHH--
T ss_conf 8328999999999999999999722----------137666469999999999999999999980263-------389--
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 03678698764207721102200011678877310035899999998777899999999987410010024402899999
Q 006507 119 FYLNSFLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACC 198 (642)
Q Consensus 119 ~Ylk~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~lLr~~~l~~yl~Rl~ri~~l~~~~~~~~~~~~~~~~~~~~~~ 198 (642)
+|+|++++|++|++|++..... ..+. ......+.+|+ .|++|+.|+.+...+....+........+..
T Consensus 68 ~y~~~~iiDllailP~~~~~~~----~~~~-~~~~~lr~lRl-------lRllR~~r~~~~~~~~~~~l~~~~~~~~l~~ 135 (223)
T 1orq_C 68 GYVKKTLYEIPALVPAGLLALI----EGHL-AGLGLFRLVRL-------LRFLRILLIISRGSKFLSAIADAADKIRFYH 135 (223)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHH----HHHH-HTTTCHHHHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HCCH-HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999729898899899999987----2122-17789999999-------9999999999999999999999999978999
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99-99999999989999885544547888741014776554310357877655223337777679876553022987730
Q 006507 199 IL-IYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQS 277 (642)
Q Consensus 199 Ll-~~~l~~H~~aC~wyl~~~~~~~~cw~~~c~~~~~c~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~ 277 (642)
++ ..++..|+.||++|.+.. +++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e~---------------------------~~~----------------------------- 159 (223)
T 1orq_C 136 LFGAVMLTVLYGAFAIYIVEY---------------------------PDP----------------------------- 159 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS---------------------------SST-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------------CCC-----------------------------
T ss_conf 999999999999999999971---------------------------776-----------------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 665560148788998874302033335667656744578999999999999999999999999970
Q 006507 278 GMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 343 (642)
Q Consensus 278 ~~~~~~~~~~~Y~~slywa~~tlttvGyGd~~p~~~~E~~f~i~~~i~G~~~fa~iig~i~~~l~~ 343 (642)
++....|..|+||++.|+||+||||++|.+..+++++++.|+.|..++|+.+|.+++.+++
T Consensus 160 -----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 160 -----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp -----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----7876751417786886873538988888987189999999999999999999999999987
No 6
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=1.00 E-value=1 Score=157.45 Aligned_cols=174 Identities=11% Similarity=0.114 Sum_probs=152.8
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCEEEEECCCEEEECCCCCCCEEEEEEEEEEEEEEEC-CCEEEEEEEEECCCCCEEC
Q ss_conf 998538910002859999999751688996588188826998662899997579999826-9732336878517998242
Q 006507 412 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 490 (642)
Q Consensus 412 ~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGe~~~~lyfI~~G~v~~~~~~-~~~~~~~~~~~l~~G~~fG 490 (642)
..++++++.|.+++++.+..++..++.+.|+||+.|+++||+++.+|||.+|.++++..+ +|++.+ +.++.+|++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCEEEEECCCCEEECCCCEEEEEEEEECCEEEEEEECCCCCEEE--EEECCCCCEEE
T ss_conf 9999999980899999999999757899975999987899821077884358589999989998999--99856994885
Q ss_pred HH-HHHCCCCCCCCCCCCCCCEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 64-56403899999999996308998143899997199899999853233577311456873200124567875899999
Q 006507 491 EE-LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAW 569 (642)
Q Consensus 491 e~-~l~~~l~~~~~~~~~~s~~ti~Alt~~~l~~Ls~~dl~~l~~~~P~~~l~~~~l~~~~r~ys~~~~~~~~~~~~~~~ 569 (642)
|. +++ .. .++.++++|+++|+++.|++++|.++++++ |.+.......+...+
T Consensus 84 e~~~~~---~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~l 136 (194)
T 3dn7_A 84 DYMAFQ---KQ------QPADFYIQSVENCELLSITYTEQENLFERI------------------PALERYFRLVYQKSF 136 (194)
T ss_dssp CHHHHH---HT------CBCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------TTHHHHHHHHHHHHH
T ss_pred EHHHHH---CC------CCCCEEEEEECCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHH
T ss_conf 468986---29------997269999788899997399999999869------------------799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999965433247887735476532129999750257999788878
Q 006507 570 CRYKKRKLEGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTY 614 (642)
Q Consensus 570 ~~~~~r~~~~~~~~a~ery~~~~~~~p~~~~~~~~~~~as~~~~~ 614 (642)
....+|...+...++++||..++.+.|++..++++..+|+-+...
T Consensus 137 ~~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~s 181 (194)
T 3dn7_A 137 AAAQLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFT 181 (194)
T ss_dssp HHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCC
T ss_conf 999999999854999999999999796999878999877786998
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=1.00 E-value=1 Score=153.60 Aligned_cols=288 Identities=11% Similarity=0.082 Sum_probs=151.3
Q ss_pred CCEE-CCCCCC----HHHHHHHHHHHHHHHCCEEEEEEEECCCCC----E-----------EE--ECCCCEEEHHHHHHH
Q ss_conf 9112-699930----479999999998730240668888848751----2-----------55--076532212335789
Q 006507 37 NRIV-DPRGPF----WNWIWLAVRIISTSLDPLFFYIFVVNDHKK----C-----------VD--LDIKLAIIAISLRTI 94 (642)
Q Consensus 37 ~~~i-~P~s~~----Wd~~~~~~~~~~~~~~Pl~~~~~~~~~~~~----~-----------~~--~~~~~~~~~~~~~~~ 94 (642)
+.++ +|.+.. |+.++++++++++++..+.-+ |....... + .. ........+.++|.+
T Consensus 169 w~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i 247 (514)
T 2r9r_B 169 WLLFEYPESSGPARIIAIVSVMVILISIVSFCLETL-PIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETL 247 (514)
T ss_dssp HHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 989348887378889999999999999897632046-1002221123334333344566543444431021089999999
Q ss_pred HHHHHHH---HC--CCCCCCCHHHHHHHHHHHHH--HHHHHHHCCCCCCHHHHEEECCCCCCCC--CCHHHHHHHHHHHH
Q ss_conf 8887765---20--69531261566402303678--6987642077211022000116788773--10035899999998
Q 006507 95 FDFFNII---YS--SSTPHKHSRANAKKCFYLNS--FLKDLLSCLPIPQLVTSIIIITSKGSGF--FPAMVWLKVVVIVQ 165 (642)
Q Consensus 95 ~D~~f~~---f~--~~~~v~d~~~Ia~~~~Ylk~--F~iDlls~lP~~~i~~~~~~~~~~~~~~--~~~~~lLr~~~l~~ 165 (642)
+.++|.+ ++ ... ..+ +|+++ .++|+++++|+...... +....+.. ......+|++|++|
T Consensus 248 ~~~iFtiE~ilR~~~~~-------~k~--~Y~ks~wniiDli~iip~~i~l~~---~~~~~~~~~~~~~~~~lrvlRllR 315 (514)
T 2r9r_B 248 CIIWFSFEFLVRFFACP-------SKA--GFFTNIMNIIDIVAIIPYYVTIFL---TESNKSVLQFQNVRRVVQIFRIMR 315 (514)
T ss_dssp HHHHHHHHHHHHHHHSS-------CSS--SSTTSHHHHHHHHTTHHHHHHHHH---HHTSCSHHHHHTTHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHCC-------CHH--HHHHCHHHHHHHHHHHHHHHHHHH---HHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999988188-------688--888362379999999999999986---411343202456788999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 7778999999999874100100244028999999999-999999989999885544547888741014776554310357
Q 006507 166 YVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIY-LLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYE 244 (642)
Q Consensus 166 yl~Rl~ri~~l~~~~~~~~~~~~~~~~~~~~~~Ll~~-~l~~H~~aC~wyl~~~~~~~~cw~~~c~~~~~c~~~~~~~~~ 244 (642)
+.|++|+.+..+.+......+..+. ..+..++++ ++..+++||++|....
T Consensus 316 -vlRilkL~r~~~~l~~l~~tl~~s~--~~l~~ll~~l~i~~~if~~~~~~~e~-------------------------- 366 (514)
T 2r9r_B 316 -ILRIFKLSRHSKGLQILGQTLKASM--RELGLLIFFLFIGVILFSSAVYFAEA-------------------------- 366 (514)
T ss_dssp -GGGGGGGGGSCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHT--------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHEEEC--------------------------
T ss_conf -9999998631027899999999999--99999999999999998740310214--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 87765522333777767987655302298773066556014878899887430203333566765674457899999999
Q 006507 245 TVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIII 324 (642)
Q Consensus 245 ~~~~~~W~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Y~~slywa~~tlttvGyGd~~p~~~~E~~f~i~~~i 324 (642)
|. ..+.+..|..|+||++.||||+||||+.|.+..+++|++++++
T Consensus 367 ------~~-----------------------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l 411 (514)
T 2r9r_B 367 ------DE-----------------------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAI 411 (514)
T ss_dssp ------TC-----------------------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHH
T ss_pred ------CC-----------------------------CCCCCCCHHHHHHEEEEEEEECCCCCCCCCCCCHHHHEHHHHH
T ss_conf ------67-----------------------------8766552012130124677731248888898432761105999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHH
Q ss_conf 99999999999999999704102999999999999999838999989999999999999984399978886206622125
Q 006507 325 ASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNW 404 (642)
Q Consensus 325 ~G~~~fa~iig~i~~~l~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~ 404 (642)
+|++++++.+|.+.+.++....+..+. +..+..+.++.-...|.....+ + .+.....++.-..+|...++.
T Consensus 412 ~G~~~l~l~iavI~~~f~~~~~~~~~~-~~~~l~~h~iicg~~~~~~~l~--~------~~~~~~~~~s~~~el~e~~~~ 482 (514)
T 2r9r_B 412 AGVLTIALPVPVIVSNFNYFYHRETEG-EEQAQYLQVTSSPKIPSSPDLK--K------SRSASTISKSDYMEIQEGVNN 482 (514)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCEEEECCCCCCHHHH--H------CCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999999999999999999999999-9997337899968876426677--4------146777444542221222210
Q ss_pred HHHHHH
Q ss_conf 567799
Q 006507 405 EMKSEL 410 (642)
Q Consensus 405 ~I~~~l 410 (642)
++..+.
T Consensus 483 ~~~~~~ 488 (514)
T 2r9r_B 483 SNEDFR 488 (514)
T ss_dssp ------
T ss_pred CCCCCC
T ss_conf 000134
No 8
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=146.14 Aligned_cols=181 Identities=16% Similarity=0.166 Sum_probs=148.2
Q ss_pred HCCCCCCCCCCHHHHHHHHHCCEEEEECCCEEEECCCCCCCEEEEEEEEEEEEEEE-CCCEEEEEEEEECCCCCEECHHH
Q ss_conf 53891000285999999975168899658818882699866289999757999982-69732336878517998242645
Q 006507 415 LKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEEL 493 (642)
Q Consensus 415 l~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGe~~~~lyfI~~G~v~~~~~-~~~~~~~~~~~~l~~G~~fGe~~ 493 (642)
++++|+|.+++++.+..++..++...|+||+.|+++||+++.+|||.+|.++++.. .+|++.+ +..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCCHHHCCCCHHHHHHHHHHHEEEEECCCCEEEECCCCCCEEEEEEECEEEEEEECCCCCEEE--EEEECCCCEEEEHH
T ss_conf 9888532499999999999862178958989898089978889999947899999889997899--98856998972424
Q ss_pred HHCCCCCCCCCCCCCCCEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 64038999999999963089981438999971998999998532335773114568732001245678758999999999
Q 006507 494 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYK 573 (642)
Q Consensus 494 l~~~l~~~~~~~~~~s~~ti~Alt~~~l~~Ls~~dl~~l~~~~P~~~l~~~~l~~~~r~ys~~~~~~~~~~~~~~~~~~~ 573 (642)
++. +. ++.++++|.++|+++.+++++|.++++++ |++.......+........
T Consensus 79 ~~~---~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~~~~~~ 131 (216)
T 4ev0_A 79 LLD---EG------ERSASAVAVEDTELLALFREDYLALIRRL------------------PLVAHNLAALLARRLREAD 131 (216)
T ss_dssp HHH---CC------BCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HCC---CC------CCCEEEEECCCEEEEEECHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHH
T ss_conf 407---99------86459998577799998299999999879------------------0999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HCCCCCCCCHHHHHHHHHH------HHHHHHHHHCCC
Q ss_conf 65433247887735476532----1299997502579997888------788887544099
Q 006507 574 KRKLEGSLYAKENILQDQKA----EAGGKPSKFGTAIYATQFF------TYVRRSVKRNGG 624 (642)
Q Consensus 574 ~r~~~~~~~~a~ery~~~~~----~~p~~~~~~~~~~~as~~~------~~~~~~~~~~~~ 624 (642)
++.......++++|+..++. +.+.+...++...+|+.+. +.+++-.++.|-
T Consensus 132 ~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~ 192 (216)
T 4ev0_A 132 LELDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGV 192 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 9999985489999999999998640775677889999998859989999999999997898
No 9
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=1.00 E-value=1 Score=144.19 Aligned_cols=188 Identities=10% Similarity=0.047 Sum_probs=147.7
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEEEECCCEEEECCCCCCCEEEEEEEEEEEEEEEC-CCEEEEEEEEECCCC
Q ss_conf 7999998538910002859999999751688996588188826998662899997579999826-973233687851799
Q 006507 408 SELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTG 486 (642)
Q Consensus 408 ~~l~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGe~~~~lyfI~~G~v~~~~~~-~~~~~~~~~~~l~~G 486 (642)
.....++++++++|.+++++.+..++..++.+.|++|+.|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|
T Consensus 6 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G 83 (237)
T 3fx3_A 6 HEAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRG 83 (237)
T ss_dssp CHHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETT
T ss_pred HHHHHHHHHCCHHHCCCCHHHHHHHHHHCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEE--EEEECCC
T ss_conf 07799998679733359999999998517799978999887089965648999944899999999999899--9990799
Q ss_pred CEECHHHHHCCCCCCCCCCCCCCCEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 82426456403899999999996308998143899997199899999853233577311456873200124567875899
Q 006507 487 DFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQ 566 (642)
Q Consensus 487 ~~fGe~~l~~~l~~~~~~~~~~s~~ti~Alt~~~l~~Ls~~dl~~l~~~~P~~~l~~~~l~~~~r~ys~~~~~~~~~~~~ 566 (642)
++||+.+++. .. ++.++++|.++|+++.|++++|.+++.++ |.+.......+.
T Consensus 84 ~~~G~~~~~~---~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~ 136 (237)
T 3fx3_A 84 ESFGEAVALR---NT------PYPVSAEAVTPCEVMHIPSPVFVSLMRRD------------------PEICISILATTF 136 (237)
T ss_dssp EEECHHHHHH---TC------CCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHH
T ss_pred CEECHHHHHC---CC------CCCCEEEECCCEEEEEECHHHHHHHHHHC------------------HHHHHHHHHHHH
T ss_conf 8831378746---99------98746998786599998499999999879------------------899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCCCCH--HHHHHHHHH------HHHHHHHHHCCC
Q ss_conf 99999996543324788773547653212-----99997502--579997888------788887544099
Q 006507 567 AAWCRYKKRKLEGSLYAKENILQDQKAEA-----GGKPSKFG--TAIYATQFF------TYVRRSVKRNGG 624 (642)
Q Consensus 567 ~~~~~~~~r~~~~~~~~a~ery~~~~~~~-----p~~~~~~~--~~~~as~~~------~~~~~~~~~~~~ 624 (642)
.......++.......++++|+..++.+. ++...++| ...+|+.+. +.+++-.++.|-
T Consensus 137 ~~l~~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 137 GHLHSLVAQLEQLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCE
T ss_conf 99999999999986489999999999997464399759971699999998869989999999999997792
No 10
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=1.00 E-value=1 Score=144.10 Aligned_cols=185 Identities=18% Similarity=0.220 Sum_probs=146.0
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHCCEEEEECCCEEEECCCCCCCEEEEEEEEEEEEEEEC-CCEEEEEEEEECCCCCEE
Q ss_conf 9998538910002859999999751688996588188826998662899997579999826-973233687851799824
Q 006507 411 CLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFW 489 (642)
Q Consensus 411 ~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~kge~Ii~eGe~~~~lyfI~~G~v~~~~~~-~~~~~~~~~~~l~~G~~f 489 (642)
+.++++++++|.+++++.+..++..++...|+||+.|+++||+++.+|||.+|.++++..+ +|++.+ +..+.+|++|
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~ 81 (227)
T 3d0s_A 4 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMF 81 (227)
T ss_dssp CHHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEE
T ss_pred HHHHHHCCHHHCCCCHHHHHHHHHHCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEE--EEEECCCCEE
T ss_conf 79998539643279999999999647599968999898587958879999935899999989985999--9985499977
Q ss_pred CHHHHHCCCCCCCCCCCCCCCEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 26456403899999999996308998143899997199899999853233577311456873200124567875899999
Q 006507 490 GEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAW 569 (642)
Q Consensus 490 Ge~~l~~~l~~~~~~~~~~s~~ti~Alt~~~l~~Ls~~dl~~l~~~~P~~~l~~~~l~~~~r~ys~~~~~~~~~~~~~~~ 569 (642)
|+.+++ .+. ++.++++|.++|+++.|++++|.++++++ |.+.......+...+
T Consensus 82 G~~~~~---~~~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l 134 (227)
T 3d0s_A 82 GELSIF---DPG------PRTSSATTITEVRAVSMDRDALRSWIADR------------------PEISEQLLRVLARRL 134 (227)
T ss_dssp SCHHHH---SCS------CCSSEEEESSCEEEEEEEHHHHHHTTSSC------------------HHHHHHHHHHHHHHH
T ss_pred EEHHHC---CCC------CCEEEEEECCCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHH
T ss_conf 258874---899------84059998554799998499999999979------------------499999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------CCCCCCCCHHHHHHHHHH------HHHHHHHHHCCC
Q ss_conf 9999654332478877354765321-----------299997502579997888------788887544099
Q 006507 570 CRYKKRKLEGSLYAKENILQDQKAE-----------AGGKPSKFGTAIYATQFF------TYVRRSVKRNGG 624 (642)
Q Consensus 570 ~~~~~r~~~~~~~~a~ery~~~~~~-----------~p~~~~~~~~~~~as~~~------~~~~~~~~~~~~ 624 (642)
....++.......++++|+..++.. .+.+...++...+|+... +.+++-.++.|-
T Consensus 135 ~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~ 206 (227)
T 3d0s_A 135 RRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGW 206 (227)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 999999999862898899999999999981976899349737879999998868769999999999997898
Done!