BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006508
(642 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 79/167 (47%), Gaps = 9/167 (5%)
Query: 342 SQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLN 401
S ++ L +++ AL +A++ + F +S +R P+ +I+G +++ +
Sbjct: 19 SHMLQSALADRSAALAEAER-------LKRDFVGNVSYELRTPLTTIIGYSELLERADGI 71
Query: 402 SDQ-RMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLS 460
S++ R V + ++ L+ I DV+D + D+G LEI R+ ++ A A +
Sbjct: 72 SERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDA 131
Query: 461 IYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTV 507
G ++E + + + GD +R+ Q + H+V + L G V
Sbjct: 132 QLGGVTLAVECEEDV-GLIRGDGKRLAQTLDHLVENALRQTPPGGRV 177
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 285 SNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQH 344
S+ K +P L + Y LV Q + W ELE +K+ A+++ + +LE ++
Sbjct: 1235 SSVKYASPNL-NMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTRE 1293
Query: 345 MREKLEEQNRALQQ 358
+ + E Q RA QQ
Sbjct: 1294 IHNEAESQLRAAQQ 1307
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 285 SNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQH 344
S+ K +P L + Y LV Q + W ELE +K+ A+++ + +LE ++
Sbjct: 1434 SSVKYASPNL-NMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTRE 1492
Query: 345 MREKLEEQNRALQQ 358
+ + E Q RA QQ
Sbjct: 1493 IHNEAESQLRAAQQ 1506
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 285 SNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQH 344
S+ K +P L + Y LV Q + W ELE +K+ A+++ + +LE ++
Sbjct: 1434 SSVKYASPNL-NMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTRE 1492
Query: 345 MREKLEEQNRALQQ 358
+ + E Q RA QQ
Sbjct: 1493 IHNEAESQLRAAQQ 1506
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 317 QELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKV 376
+ LE + V+ V AL A + E+Q R+KLE NR LQ + + + +NA ++V
Sbjct: 106 KPLEDLAVLEHSVRRALDRAYLRVENQRYRDKLEAANRELQASLN---LLQEDQNAGRQV 162
Query: 377 MSNGMRRPMHSILGL 391
N + SI GL
Sbjct: 163 QXNXLPVTPWSIEGL 177
>pdb|2K2N|A Chain A, Solution Structure Of A Cyanobacterial Phytochrome Gaf
Domain In The Red Light-Absorbing Ground State
pdb|2KLI|A Chain A, Structural Basis For The Photoconversion Of A Phytochrome
To The Activated Far-Red Light-Absorbing Form
pdb|2KOI|A Chain A, Refined Solution Structure Of A Cyanobacterial Phytochrome
Gaf Domain In The Red Light-Absorbing Ground State
Length = 172
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 26/34 (76%)
Query: 303 VLVLPNEQFRTWSNQELEIVKVVADQVLVALSHA 336
+LV + + R +S +EL++V+++ADQV +A++ A
Sbjct: 135 LLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQA 168
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 317 QELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKV 376
+ LE + V+ V AL A + E+Q R+KLE NR LQ + + + +NA ++V
Sbjct: 106 KPLEDLAVLEHSVRRALDRAYLRVENQRYRDKLEAANRELQASLN---LLQEDQNAGRQV 162
Query: 377 MSNGMRRPMHSILGL 391
N + SI GL
Sbjct: 163 QXNXLPVTPWSIEGL 177
>pdb|2LB5|A Chain A, Refined Structural Basis For The Photoconversion Of A
Phytochrome To The Activated Far-Red Light-Absorbing
Form
pdb|2LB9|A Chain A, Refined Solution Structure Of A Cyanobacterial Phytochrome
Gaf Domain In The Red Light-Absorbing Ground State
(Corrected Pyrrole Ring Planarity)
Length = 208
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 26/34 (76%)
Query: 303 VLVLPNEQFRTWSNQELEIVKVVADQVLVALSHA 336
+LV + + R +S +EL++V+++ADQV +A++ A
Sbjct: 165 LLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQA 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,876,324
Number of Sequences: 62578
Number of extensions: 574403
Number of successful extensions: 1131
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 10
length of query: 642
length of database: 14,973,337
effective HSP length: 105
effective length of query: 537
effective length of database: 8,402,647
effective search space: 4512221439
effective search space used: 4512221439
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)