Query 006508
Match_columns 642
No_of_seqs 531 out of 3650
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 00:18:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2205 KdpD Osmosensitive K+ 100.0 1.3E-62 2.8E-67 528.8 46.2 472 51-615 397-884 (890)
2 PRK10490 sensor protein KdpD; 100.0 1.8E-49 3.9E-54 463.3 51.1 472 50-614 399-886 (895)
3 PRK13837 two-component VirA-li 100.0 3.9E-40 8.5E-45 386.0 53.0 462 113-642 237-704 (828)
4 COG5002 VicK Signal transducti 100.0 2.6E-40 5.5E-45 323.2 19.1 226 367-615 222-453 (459)
5 TIGR02916 PEP_his_kin putative 100.0 2.8E-36 6E-41 346.4 52.1 365 173-609 308-679 (679)
6 PRK11091 aerobic respiration c 100.0 1E-36 2.2E-41 356.7 47.7 251 365-642 278-532 (779)
7 PRK10618 phosphotransfer inter 100.0 4.9E-38 1.1E-42 363.7 34.1 262 353-642 433-696 (894)
8 PRK09303 adaptive-response sen 100.0 7.7E-36 1.7E-40 319.5 33.0 235 355-611 136-378 (380)
9 PRK10841 hybrid sensory kinase 100.0 1.9E-35 4.1E-40 347.1 33.3 237 354-613 431-670 (924)
10 PRK11107 hybrid sensory histid 100.0 6.2E-35 1.3E-39 348.3 38.3 273 345-642 268-543 (919)
11 TIGR02956 TMAO_torS TMAO reduc 100.0 7.8E-35 1.7E-39 349.2 36.8 260 355-642 449-709 (968)
12 COG4251 Bacteriophytochrome (l 100.0 1.9E-33 4.2E-38 294.2 41.6 233 355-615 509-746 (750)
13 PRK15347 two component system 100.0 9E-35 2E-39 347.0 35.3 243 346-612 374-616 (921)
14 PRK11466 hybrid sensory histid 100.0 1.5E-34 3.3E-39 344.6 34.3 271 342-642 416-688 (914)
15 PRK11006 phoR phosphate regulo 100.0 5.4E-32 1.2E-36 295.2 28.0 219 369-612 203-425 (430)
16 PRK09959 hybrid sensory histid 100.0 1.1E-31 2.3E-36 328.4 32.3 266 356-642 698-965 (1197)
17 PRK10364 sensor protein ZraS; 100.0 6.8E-29 1.5E-33 273.1 47.6 214 369-612 236-450 (457)
18 COG4191 Signal transduction hi 100.0 1.2E-30 2.6E-35 274.4 31.4 214 369-610 383-601 (603)
19 TIGR02938 nifL_nitrog nitrogen 100.0 5.1E-31 1.1E-35 291.9 30.4 216 369-610 275-494 (494)
20 COG3852 NtrB Signal transducti 100.0 2E-30 4.3E-35 250.9 25.1 223 368-612 130-356 (363)
21 PRK10604 sensor protein RstB; 100.0 5.5E-30 1.2E-34 279.4 29.3 230 352-613 194-426 (433)
22 PRK10815 sensor protein PhoQ; 100.0 8.1E-30 1.8E-34 280.8 30.4 234 349-611 245-479 (485)
23 PRK10755 sensor protein BasS/P 100.0 2.1E-29 4.5E-34 268.0 28.9 212 371-611 138-351 (356)
24 PRK10549 signal transduction h 100.0 3.5E-29 7.7E-34 276.0 29.7 243 347-614 217-462 (466)
25 TIGR03785 marine_sort_HK prote 100.0 8.8E-29 1.9E-33 283.3 30.4 239 347-609 462-703 (703)
26 PRK10337 sensor protein QseC; 100.0 4.1E-28 8.8E-33 266.3 30.1 234 348-608 215-449 (449)
27 PRK11073 glnL nitrogen regulat 100.0 9.8E-28 2.1E-32 254.3 28.6 219 369-611 129-348 (348)
28 TIGR02966 phoR_proteo phosphat 100.0 6.3E-28 1.4E-32 253.1 26.5 216 369-608 113-333 (333)
29 TIGR01386 cztS_silS_copS heavy 100.0 9.2E-28 2E-32 263.8 28.9 236 347-609 218-457 (457)
30 PRK09835 sensor kinase CusS; P 100.0 3E-27 6.4E-32 261.8 31.3 238 348-611 240-481 (482)
31 PRK13557 histidine kinase; Pro 100.0 8.5E-27 1.8E-31 261.6 30.0 256 369-642 162-422 (540)
32 PRK11100 sensory histidine kin 100.0 1E-26 2.2E-31 256.7 29.8 238 348-611 235-474 (475)
33 PRK09467 envZ osmolarity senso 100.0 1E-26 2.2E-31 254.2 29.0 228 347-611 206-434 (435)
34 PRK09470 cpxA two-component se 100.0 1.8E-26 3.8E-31 254.1 30.2 237 347-612 220-459 (461)
35 PRK11360 sensory histidine kin 100.0 3.2E-26 6.9E-31 260.0 30.8 215 369-612 389-603 (607)
36 KOG0519 Sensory transduction h 100.0 9.3E-30 2E-34 291.3 0.5 620 23-642 25-673 (786)
37 COG5000 NtrY Signal transducti 99.9 2.8E-23 6.1E-28 217.9 48.1 209 371-610 487-708 (712)
38 COG0642 BaeS Signal transducti 99.9 1.5E-24 3.3E-29 226.0 30.3 219 369-614 114-333 (336)
39 PRK10600 nitrate/nitrite senso 99.9 1.1E-21 2.3E-26 221.7 50.7 344 160-612 210-558 (569)
40 PRK13560 hypothetical protein; 99.9 1.5E-24 3.3E-29 255.3 25.5 210 357-611 592-804 (807)
41 PRK11644 sensory histidine kin 99.9 5.4E-23 1.2E-27 226.8 31.5 248 314-610 245-494 (495)
42 COG4192 Signal transduction hi 99.9 1.6E-22 3.6E-27 204.5 27.6 213 370-611 451-667 (673)
43 PRK11086 sensory histidine kin 99.9 1.2E-22 2.6E-27 228.3 23.1 195 372-613 341-538 (542)
44 PRK15053 dpiB sensor histidine 99.9 4.5E-22 9.7E-27 224.0 26.5 193 374-612 342-541 (545)
45 COG3290 CitA Signal transducti 99.9 1.1E-19 2.4E-24 191.1 41.5 198 371-614 334-535 (537)
46 PRK10935 nitrate/nitrite senso 99.9 8.6E-18 1.9E-22 190.0 42.6 249 275-612 305-561 (565)
47 PRK13559 hypothetical protein; 99.9 4.3E-20 9.3E-25 196.8 21.5 186 370-611 170-360 (361)
48 COG3275 LytS Putative regulato 99.8 1.7E-16 3.8E-21 162.7 37.1 402 90-614 144-555 (557)
49 PF02518 HATPase_c: Histidine 99.8 4.6E-19 1E-23 155.3 11.0 108 481-610 1-110 (111)
50 COG3850 NarQ Signal transducti 99.8 6.9E-15 1.5E-19 153.7 41.6 330 153-610 225-568 (574)
51 PRK10547 chemotaxis protein Ch 99.7 5E-16 1.1E-20 173.6 19.8 146 443-613 343-526 (670)
52 COG3851 UhpB Signal transducti 99.5 8.4E-12 1.8E-16 124.1 28.4 192 366-609 299-493 (497)
53 COG0643 CheA Chemotaxis protei 99.5 7.5E-13 1.6E-17 148.9 22.0 146 443-613 390-576 (716)
54 COG4585 Signal transduction hi 99.5 9.4E-12 2E-16 132.8 27.5 163 400-610 203-365 (365)
55 PRK04184 DNA topoisomerase VI 99.5 1.4E-13 3E-18 148.9 13.4 140 479-640 30-179 (535)
56 smart00387 HATPase_c Histidine 99.4 1.6E-12 3.4E-17 112.4 13.5 109 481-611 1-111 (111)
57 PRK14868 DNA topoisomerase VI 99.4 5.1E-12 1.1E-16 139.2 15.3 130 461-613 21-162 (795)
58 KOG0519 Sensory transduction h 99.4 2.2E-13 4.9E-18 156.9 4.6 242 373-618 224-496 (786)
59 COG3920 Signal transduction hi 99.4 4.8E-10 1E-14 109.8 26.3 196 369-613 18-218 (221)
60 COG4564 Signal transduction hi 99.4 4.6E-08 1E-12 96.6 38.9 199 369-612 250-449 (459)
61 PRK15429 formate hydrogenlyase 99.3 1.9E-10 4E-15 132.4 25.7 185 162-359 177-367 (686)
62 TIGR01052 top6b DNA topoisomer 99.3 3.4E-11 7.4E-16 129.1 14.2 104 479-604 22-134 (488)
63 cd00075 HATPase_c Histidine ki 99.2 6.7E-11 1.5E-15 100.4 11.4 101 486-608 1-103 (103)
64 PF00512 HisKA: His Kinase A ( 99.2 3E-11 6.5E-16 95.6 8.4 66 369-434 1-68 (68)
65 PRK14867 DNA topoisomerase VI 99.2 7.9E-11 1.7E-15 129.9 14.2 114 479-613 27-152 (659)
66 TIGR01925 spIIAB anti-sigma F 99.2 1.3E-10 2.8E-15 105.8 12.2 100 480-608 34-136 (137)
67 COG2972 Predicted signal trans 99.2 4.4E-09 9.6E-14 115.3 26.0 96 487-612 352-454 (456)
68 PRK03660 anti-sigma F factor; 99.1 5.5E-10 1.2E-14 102.8 12.7 104 481-613 35-141 (146)
69 PRK11061 fused phosphoenolpyru 99.1 4.9E-09 1.1E-13 120.3 23.0 161 170-343 3-164 (748)
70 TIGR01817 nifA Nif-specific re 99.0 3.3E-08 7.1E-13 110.8 20.3 158 169-340 4-163 (534)
71 PF13492 GAF_3: GAF domain; PD 98.9 2.2E-08 4.7E-13 89.4 14.1 129 184-335 1-129 (129)
72 PF01590 GAF: GAF domain; Int 98.9 8.6E-09 1.9E-13 95.1 11.4 137 184-333 1-154 (154)
73 PRK04069 serine-protein kinase 98.8 6.8E-08 1.5E-12 90.3 13.5 105 482-614 39-147 (161)
74 KOG0787 Dehydrogenase kinase [ 98.8 1.1E-06 2.3E-11 89.0 20.6 185 404-611 173-381 (414)
75 smart00065 GAF Domain present 98.8 2.8E-07 6E-12 82.6 15.2 144 184-341 1-147 (149)
76 PRK05022 anaerobic nitric oxid 98.8 3.9E-07 8.3E-12 101.3 19.3 166 170-351 4-174 (509)
77 PRK15429 formate hydrogenlyase 98.7 7.5E-07 1.6E-11 102.8 19.3 171 169-355 8-183 (686)
78 PF13185 GAF_2: GAF domain; PD 98.7 2.9E-07 6.3E-12 84.2 12.4 137 183-334 2-148 (148)
79 TIGR01924 rsbW_low_gc serine-p 98.7 3.2E-07 7E-12 85.4 12.5 104 484-615 41-148 (159)
80 PF14501 HATPase_c_5: GHKL dom 98.6 4.2E-07 9.1E-12 77.7 11.9 96 482-609 2-100 (100)
81 COG3605 PtsP Signal transducti 98.6 1.1E-05 2.3E-10 86.0 22.0 155 172-339 5-160 (756)
82 COG1389 DNA topoisomerase VI, 98.5 7.1E-07 1.5E-11 92.3 11.2 134 483-639 34-177 (538)
83 smart00388 HisKA His Kinase A 98.5 5.2E-07 1.1E-11 69.8 7.5 64 370-433 2-65 (66)
84 COG3604 FhlA Transcriptional r 98.2 4.7E-05 1E-09 80.6 17.0 179 169-360 33-215 (550)
85 PF13581 HATPase_c_2: Histidin 98.2 1.5E-05 3.3E-10 71.0 10.7 92 484-607 30-124 (125)
86 cd00082 HisKA Histidine Kinase 98.1 1.8E-05 3.9E-10 60.5 8.2 62 369-430 3-65 (65)
87 COG2203 FhlA FOG: GAF domain [ 98.0 1.1E-05 2.4E-10 74.7 6.1 159 170-341 4-170 (175)
88 TIGR00585 mutl DNA mismatch re 97.8 0.00011 2.3E-09 76.6 11.0 95 484-607 21-125 (312)
89 PRK13558 bacterio-opsin activa 97.8 0.0012 2.5E-08 76.6 20.2 148 171-337 289-439 (665)
90 COG2172 RsbW Anti-sigma regula 97.6 0.001 2.2E-08 60.8 11.5 89 480-596 35-127 (146)
91 COG5385 Uncharacterized protei 97.1 0.076 1.6E-06 48.0 17.2 193 372-608 17-212 (214)
92 PF13589 HATPase_c_3: Histidin 96.9 0.00055 1.2E-08 62.1 2.2 99 487-612 4-109 (137)
93 PRK00095 mutL DNA mismatch rep 96.8 0.0067 1.5E-07 69.0 10.5 84 485-597 22-114 (617)
94 PF11849 DUF3369: Domain of un 96.5 0.41 8.8E-06 45.2 18.9 152 158-344 10-173 (174)
95 PF10090 DUF2328: Uncharacteri 96.0 0.93 2E-05 43.0 18.5 170 386-596 2-174 (182)
96 PF04340 DUF484: Protein of un 96.0 0.21 4.5E-06 49.4 14.6 163 147-335 51-222 (225)
97 COG1956 GAF domain-containing 96.0 0.37 8E-06 43.8 14.5 124 187-332 35-159 (163)
98 PRK05559 DNA topoisomerase IV 95.2 0.041 9E-07 62.6 7.3 87 482-596 34-137 (631)
99 PRK10963 hypothetical protein; 95.0 1.5 3.3E-05 43.1 16.8 163 146-335 47-218 (223)
100 TIGR01059 gyrB DNA gyrase, B s 94.9 0.064 1.4E-06 61.5 7.6 49 482-554 27-77 (654)
101 PRK05218 heat shock protein 90 94.8 0.08 1.7E-06 60.1 7.9 54 540-597 74-142 (613)
102 COG0323 MutL DNA mismatch repa 94.7 0.03 6.4E-07 63.7 4.4 55 488-566 26-80 (638)
103 PRK14083 HSP90 family protein; 94.7 0.034 7.5E-07 62.5 4.7 50 488-559 26-83 (601)
104 PRK05644 gyrB DNA gyrase subun 94.1 0.19 4.1E-06 57.3 9.0 50 482-555 34-85 (638)
105 PTZ00272 heat shock protein 83 93.9 0.046 1E-06 62.4 3.7 21 539-559 72-92 (701)
106 PF13493 DUF4118: Domain of un 92.9 0.29 6.4E-06 41.8 6.3 81 54-134 3-98 (105)
107 COG0326 HtpG Molecular chapero 92.5 0.18 3.9E-06 55.9 5.3 19 539-557 74-92 (623)
108 COG3159 Uncharacterized protei 92.0 7.1 0.00015 37.4 14.5 159 148-335 50-215 (218)
109 TIGR01055 parE_Gneg DNA topois 91.2 0.19 4.2E-06 57.0 3.9 80 482-585 27-123 (625)
110 smart00433 TOP2c Topoisomerase 90.3 0.38 8.3E-06 54.5 5.3 46 487-556 3-50 (594)
111 PF07568 HisKA_2: Histidine ki 90.0 4.1 9E-05 32.5 9.7 72 377-457 2-73 (76)
112 PTZ00130 heat shock protein 90 89.3 0.41 9E-06 55.1 4.5 19 540-558 136-154 (814)
113 COG5381 Uncharacterized protei 89.2 0.92 2E-05 40.3 5.5 30 486-516 64-93 (184)
114 PRK14939 gyrB DNA gyrase subun 87.1 0.57 1.2E-05 54.1 3.9 48 484-555 36-85 (756)
115 TIGR02851 spore_V_T stage V sp 86.3 19 0.00041 34.1 13.1 124 183-333 52-179 (180)
116 PHA02569 39 DNA topoisomerase 84.7 0.54 1.2E-05 53.2 2.2 47 541-587 81-144 (602)
117 PF14689 SPOB_a: Sensor_kinase 82.8 6.3 0.00014 30.1 6.7 44 374-421 16-59 (62)
118 COG4251 Bacteriophytochrome (l 82.8 89 0.0019 35.3 20.4 40 171-210 329-368 (750)
119 PF10066 DUF2304: Uncharacteri 79.5 41 0.00089 29.2 12.0 18 150-167 93-110 (115)
120 PLN03237 DNA topoisomerase 2; 79.4 2.3 4.9E-05 52.2 4.8 47 486-555 78-127 (1465)
121 KOG1979 DNA mismatch repair pr 79.1 2.4 5.1E-05 46.4 4.3 53 489-566 31-84 (694)
122 TIGR01058 parE_Gpos DNA topois 77.7 1.9 4.1E-05 49.2 3.4 50 482-555 31-82 (637)
123 PF06210 DUF1003: Protein of u 76.8 48 0.001 28.5 11.6 14 118-131 37-50 (108)
124 KOG1978 DNA mismatch repair pr 76.7 2.8 6E-05 46.9 4.1 48 488-559 23-70 (672)
125 KOG1977 DNA mismatch repair pr 76.2 3.8 8.3E-05 45.8 4.9 55 485-564 21-75 (1142)
126 PF07851 TMPIT: TMPIT-like pro 76.1 69 0.0015 33.3 13.7 94 339-434 3-96 (330)
127 PLN03128 DNA topoisomerase 2; 76.0 4.3 9.4E-05 49.2 5.8 48 485-555 52-102 (1135)
128 PTZ00108 DNA topoisomerase 2-l 73.0 4.5 9.7E-05 49.9 5.0 48 485-555 57-110 (1388)
129 PF12805 FUSC-like: FUSC-like 70.9 94 0.002 31.7 13.6 26 112-137 73-98 (284)
130 COG0187 GyrB Type IIA topoisom 61.5 7 0.00015 43.6 3.2 50 484-557 35-86 (635)
131 PTZ00109 DNA gyrase subunit b; 59.4 2 4.4E-05 50.1 -1.4 50 483-556 127-178 (903)
132 PRK00888 ftsB cell division pr 57.1 1.2E+02 0.0027 25.8 10.3 16 153-168 37-52 (105)
133 PRK11677 hypothetical protein; 57.1 1E+02 0.0023 27.6 9.2 22 120-141 5-26 (134)
134 PF06305 DUF1049: Protein of u 55.0 48 0.001 25.5 6.2 13 153-165 51-63 (68)
135 PF14770 TMEM18: Transmembrane 52.7 1.2E+02 0.0025 26.8 8.7 47 53-101 16-62 (123)
136 PF13748 ABC_membrane_3: ABC t 52.1 2.1E+02 0.0046 28.2 11.2 53 144-196 162-216 (237)
137 PF06103 DUF948: Bacterial pro 49.4 1.5E+02 0.0031 24.3 10.6 53 128-180 11-64 (90)
138 TIGR00799 mtp Golgi 4-transmem 49.3 2.7E+02 0.0057 27.3 12.5 92 45-142 56-161 (258)
139 PF11152 DUF2930: Protein of u 44.9 69 0.0015 30.7 6.6 72 240-328 122-193 (195)
140 PF14248 DUF4345: Domain of un 44.6 1.7E+02 0.0037 25.5 8.8 65 55-122 50-115 (124)
141 PRK13922 rod shape-determining 41.8 3.8E+02 0.0083 27.0 13.1 31 151-181 77-107 (276)
142 PRK11644 sensory histidine kin 41.7 5.3E+02 0.011 28.6 14.6 13 503-515 438-450 (495)
143 PF07536 HWE_HK: HWE histidine 41.4 44 0.00095 27.2 4.1 68 377-456 2-69 (83)
144 PRK04158 transcriptional repre 41.4 3.8E+02 0.0082 26.8 16.2 53 271-337 107-159 (256)
145 PF11833 DUF3353: Protein of u 41.1 1.9E+02 0.0042 27.7 9.0 36 66-101 128-164 (194)
146 COG3114 CcmD Heme exporter pro 40.2 1.7E+02 0.0037 22.4 6.6 21 140-160 37-57 (67)
147 PF15086 UPF0542: Uncharacteri 39.9 1.8E+02 0.004 22.8 8.1 16 119-134 29-44 (74)
148 PF06018 CodY: CodY GAF-like d 37.4 3.6E+02 0.0078 25.4 13.6 52 272-337 106-157 (177)
149 PTZ00201 amastin surface glyco 37.4 2.3E+02 0.0051 27.0 8.9 38 32-69 51-89 (192)
150 PF07332 DUF1469: Protein of u 37.1 2.1E+02 0.0045 24.8 8.1 11 153-163 109-119 (121)
151 PF14965 BRI3BP: Negative regu 35.5 3.3E+02 0.0072 25.5 9.1 29 139-167 148-176 (177)
152 PF07344 Amastin: Amastin surf 35.3 3.4E+02 0.0074 24.8 9.6 38 32-70 39-78 (155)
153 COG3071 HemY Uncharacterized e 35.0 2.2E+02 0.0048 30.3 8.9 40 371-410 249-288 (400)
154 PTZ00127 cytochrome c oxidase 34.4 6.2E+02 0.014 27.3 14.0 7 25-31 287-293 (403)
155 KOG3088 Secretory carrier memb 32.9 62 0.0013 32.6 4.3 23 149-171 70-92 (313)
156 COG0813 DeoD Purine-nucleoside 29.2 54 0.0012 31.8 3.1 53 478-553 18-70 (236)
157 COG4839 FtsL Protein required 29.1 3.9E+02 0.0085 23.3 10.2 21 172-192 83-103 (120)
158 PF10856 DUF2678: Protein of u 28.3 93 0.002 26.9 4.0 18 82-99 62-79 (118)
159 TIGR02921 PEP_integral PEP-CTE 28.2 9E+02 0.02 27.4 12.3 10 53-62 114-123 (952)
160 KOG3088 Secretory carrier memb 28.0 4.5E+02 0.0098 26.7 9.3 87 50-140 162-268 (313)
161 TIGR02209 ftsL_broad cell divi 27.9 3.1E+02 0.0068 21.8 8.9 18 175-192 50-67 (85)
162 COG2865 Predicted transcriptio 27.9 2.7E+02 0.0059 30.6 8.5 94 489-612 274-382 (467)
163 PF06295 DUF1043: Protein of u 27.3 4.4E+02 0.0095 23.3 8.7 20 123-142 4-23 (128)
164 TIGR01667 YCCS_YHJK integral m 27.1 1.1E+03 0.023 27.7 15.9 31 47-77 54-84 (701)
165 COG3166 PilN Tfp pilus assembl 26.9 5.9E+02 0.013 24.7 14.1 78 142-220 54-131 (206)
166 COG4191 Signal transduction hi 26.0 9.3E+02 0.02 27.3 12.2 84 114-199 295-378 (603)
167 PF03472 Autoind_bind: Autoind 24.7 4.7E+02 0.01 22.8 9.8 101 189-289 5-115 (149)
168 COG4420 Predicted membrane pro 24.5 6.2E+02 0.013 24.1 12.3 10 100-109 82-91 (191)
169 PF07047 OPA3: Optic atrophy 3 24.5 3.5E+02 0.0077 24.1 7.4 18 115-132 75-92 (134)
170 cd07955 Anticodon_Ia_Cys_like 24.2 2E+02 0.0043 23.1 5.3 19 368-386 28-46 (81)
171 PF04156 IncA: IncA protein; 24.1 6E+02 0.013 23.8 14.2 12 83-94 13-24 (191)
172 PF06785 UPF0242: Uncharacteri 24.0 8.3E+02 0.018 25.4 17.0 28 403-430 198-225 (401)
173 KOG1478 3-keto sterol reductas 23.7 51 0.0011 32.8 1.9 32 571-613 11-42 (341)
174 PF03729 DUF308: Short repeat 23.2 3.3E+02 0.0072 20.5 7.3 28 75-102 19-46 (72)
175 TIGR00219 mreC rod shape-deter 23.2 4.3E+02 0.0094 26.9 8.7 28 334-361 67-94 (283)
176 COG4377 Predicted membrane pro 22.8 1.7E+02 0.0036 28.0 5.0 26 56-81 15-41 (258)
177 COG2820 Udp Uridine phosphoryl 21.5 1.8E+02 0.004 28.7 5.2 52 478-553 21-72 (248)
178 KOG0355 DNA topoisomerase type 21.5 1.5E+02 0.0033 34.5 5.3 51 482-555 50-102 (842)
179 COG4960 CpaA Flp pilus assembl 21.2 1.5E+02 0.0034 27.4 4.4 45 52-96 2-50 (168)
180 COG3105 Uncharacterized protei 20.8 6E+02 0.013 22.5 8.9 23 123-145 13-35 (138)
181 COG1938 Archaeal enzymes of AT 20.3 3.1E+02 0.0067 27.3 6.6 61 301-361 172-232 (244)
No 1
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-62 Score=528.77 Aligned_cols=472 Identities=13% Similarity=0.166 Sum_probs=401.2
Q ss_pred hhHHHHHHHhhHhHHHHHHHhcC-CCCchHHHHHHHHHHHHHhhHHHHHHHh-----------cCchhHHHHHHHHHHHH
Q 006508 51 SDFLIAVAYFSIPVELLYFISCS-NVPFKWVLIQFIAFIVLCGLTHLLNGWT-----------YGPHSFQLMLSLTVFKI 118 (642)
Q Consensus 51 sd~lia~a~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 118 (642)
.|+++++.++++.+.+..++.+. +..+..|+|++|+++++...+.++++++ |.+|.|+|. +..+.++
T Consensus 397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF~ePryTf~-v~d~~y~ 475 (890)
T COG2205 397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFFTEPRYTFA-VSDPQYL 475 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhheecCCceEEE-EecCchH
Confidence 78999999999999999988766 8899999999999999988888887766 366666654 8999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006508 119 LTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSN 198 (642)
Q Consensus 119 ~ta~v~~~~ai~l~~lip~~l~~~~~e~~l~~~~~~l~~e~~~~~~~~~~~~~l~~lt~~i~~s~d~~~il~~~~~~l~~ 198 (642)
+|+.||+++|+..+.| +.++++|....++|+++.++|+++++.+..+.+.++++..+.+++.+
T Consensus 476 vTf~vml~vai~t~~L-----------------t~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~ 538 (890)
T COG2205 476 VTFAVMLAVALLTGNL-----------------TARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIAS 538 (890)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHhhcCCceEeCCCchhhhhccCCcccCCceeEEE
Q 006508 199 TLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIR 278 (642)
Q Consensus 199 ~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~g~~~~i~ 278 (642)
+++. ++.++++++++....+.+ .+ .++..+..+ ..|++.++.+. +.+..+.....+.+
T Consensus 539 ~~~~-~v~i~l~~~~~~~~~~~~--~~--------~l~~~d~aa-------a~W~~~~~~~A----G~gTdTlpg~~~~~ 596 (890)
T COG2205 539 LLNQ-RVVILLPDDNGKLQPLGN--PD--------GLSADDRAA-------AQWAFENGKPA----GAGTDTLPGAKYLY 596 (890)
T ss_pred HhCC-ceEEEEecCCcccccccC--Cc--------cccHHHHHH-------hhchhhCCCcc----ccCCCCCCCCceeE
Confidence 9998 688999987754311100 00 011111112 22333333333 33344566677899
Q ss_pred eeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 279 MPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQ 358 (642)
Q Consensus 279 ~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~ 358 (642)
+|+...+..+| |+.+.+.......+++..++..+++|+|.|+++..+.++.++.+-+.
T Consensus 597 lPl~~~~~~~g-------------vlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~~--------- 654 (890)
T COG2205 597 LPLKSGGKVLG-------------VLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARLAA--------- 654 (890)
T ss_pred eecccCCceEE-------------EEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 99987776666 77777776667899999999999999999999999887765544332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcc--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhCccCCCC
Q 006508 359 AQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV--NLNSD-QRMIVETMMKSSNVLSTLISDVMDNSPKDSGR 435 (642)
Q Consensus 359 a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~--~~~~~-~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~ 435 (642)
+.++.|+.|++++||||||||++|.|.++.|... .++++ +.+.+..|.+++++|.++|+||||++|+++|.
T Consensus 655 ------e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~ 728 (890)
T COG2205 655 ------ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGG 728 (890)
T ss_pred ------HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence 3367999999999999999999999999999853 45555 67899999999999999999999999999999
Q ss_pred ccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEec
Q 006508 436 FPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSEN 515 (642)
Q Consensus 436 ~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~ 515 (642)
++++.+|..+.+++.+++..++.....+ .+.++++.++| ++..|...++||+.||++||+||++++.+|.|.+..+.
T Consensus 729 ~~l~~~~~~veEvVg~Al~r~~k~~~~~--~i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~ 805 (890)
T COG2205 729 VNLKLDWVLVEEVVGEALQRLRKRFTGH--KIVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVER 805 (890)
T ss_pred cccccchhhHHHHHHHHHHHhhhhcCCc--eEEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEec
Confidence 9999999999999999999998877655 57788899999 89999999999999999999999999999999998876
Q ss_pred CCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC-CCCCCCcchHHHHHHHHHHcCCEEEEE
Q 006508 516 GSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG-NEGIEDRMSFSVCKKLVQLMQGNIWMV 594 (642)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~v~ 594 (642)
+. +.|+|.|+|+|||++..++||++|++..+ +...|+||||+|||.||+.|||+|+++
T Consensus 806 ~~---------------------v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ahgG~I~a~ 864 (890)
T COG2205 806 EN---------------------VVFSVIDEGPGIPEGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISAE 864 (890)
T ss_pred ce---------------------EEEEEEeCCCCCChhHHHHhhhhhhcCCCCCCCCCccccHHHHHHHHHHcCCeEEEE
Confidence 54 99999999999999999999999999665 346799999999999999999999999
Q ss_pred ecCCCCcEEEEEEEEeccCCC
Q 006508 595 PSSHGFAQSMGLVLRFQLRPS 615 (642)
Q Consensus 595 s~~~g~Gt~f~i~LP~~~~~~ 615 (642)
++ +++|++|+|.||....+.
T Consensus 865 ~~-~~gGa~f~~~LP~~~~~~ 884 (890)
T COG2205 865 NN-PGGGAIFVFTLPVEEDPP 884 (890)
T ss_pred Ec-CCCceEEEEEeecCCCCc
Confidence 98 688999999999986654
No 2
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=1.8e-49 Score=463.34 Aligned_cols=472 Identities=14% Similarity=0.132 Sum_probs=372.0
Q ss_pred hhhHHHHHHHhhHhHHHHHHHhcC-CCCchHHHHHHHHHHHHHhhHHHHHHHh----------c-CchhHHHHHHHHHHH
Q 006508 50 VSDFLIAVAYFSIPVELLYFISCS-NVPFKWVLIQFIAFIVLCGLTHLLNGWT----------Y-GPHSFQLMLSLTVFK 117 (642)
Q Consensus 50 ~sd~lia~a~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~ 117 (642)
+.||+.+++.+++.+.+.+++... +.++..|+|++++++++.-++..+++++ | .||.|+|. +.+..+
T Consensus 399 ~~~~~~a~~~~~~~t~l~~~l~~~l~~~ni~mlyll~Vll~A~~~G~~pai~aavls~l~~nfFF~~P~~Tf~-v~~~~~ 477 (895)
T PRK10490 399 IQGCLVAIALCALITLIAMQWLPAFDAANLVMLYLLGVVVVALFYGRWPSVVATVINVASFDLFFVAPRGTLA-VSDVQY 477 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHheeCCCceEEE-EcCccc
Confidence 568999999999999998877654 6789999999999988887777777665 3 67666554 788899
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006508 118 ILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELS 197 (642)
Q Consensus 118 ~~ta~v~~~~ai~l~~lip~~l~~~~~e~~l~~~~~~l~~e~~~~~~~~~~~~~l~~lt~~i~~s~d~~~il~~~~~~l~ 197 (642)
++|+++++++++.++.+ +.+++.+....++++++.+.|+++++.++.+.+.+++++.+.+.+.
T Consensus 478 ~~t~~v~l~va~v~~~l-----------------~~r~r~~a~~a~~re~~~~~L~els~~L~~a~~~~~i~~~~~~~l~ 540 (895)
T PRK10490 478 LLTFAVMLTVGLVIGNL-----------------TAGVRYQARVARYREQRTRHLYEMSKALAVGLSPEDIAATSEHFLA 540 (895)
T ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999988 7888888888899999999999999999999999999999999999
Q ss_pred hhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHhhcCCceEeCCCchhhhhccCCcccCCceeEE
Q 006508 198 NTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAI 277 (642)
Q Consensus 198 ~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~g~~~~i 277 (642)
+.++.+ +++|++++++......... ...+.+......+..... ..+ .+....+...+.
T Consensus 541 ~~~~~~-~~l~l~~~~g~~~~~~~~~---------~~~~~~~~~~~w~~~~~~--------~~g----~~~~tl~~~~~~ 598 (895)
T PRK10490 541 STFQAR-SQLLLPDDNGKLQPLTHDQ---------GMTPWDDAIARWSFDKGQ--------PAG----AGTDTLPGVPYQ 598 (895)
T ss_pred HhhCCC-EEEEEEcCCCccccccccc---------cccchHHHHHHHHHhcCC--------ccc----cCcCcCCCCceE
Confidence 999975 6688887654321110000 001111111111111111 111 111223445678
Q ss_pred EeeeeecccccCCcchhhhcceeeEEEEeeCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 278 RMPMLRVSNFKGGTPELVSACYAILVLVLPNEQ-FRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRAL 356 (642)
Q Consensus 278 ~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~-~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L 356 (642)
++|+...++..| ++++.... ...|++++.++++.++.+++.++++..+.++.++.+
T Consensus 599 ~lPl~~~~~~~G-------------vl~l~~~~~~~~~~~~~~~ll~~la~~~a~aler~~l~~~~~~~~---------- 655 (895)
T PRK10490 599 ILPLKSAQKTYG-------------LLAVEPGNLRQLMIPEQQRLLETFTLLIANALERLTLTASEEQAR---------- 655 (895)
T ss_pred EEEEEECCEEEE-------------EEEEecCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 999988766655 66666544 457899999999999999999998876543321111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCC
Q 006508 357 QQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN--LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (642)
Q Consensus 357 ~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~--~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~ 434 (642)
...+.++.+++|++.++|||||||++|.|+++++.... ...+..+.++.+.+...++.+++++++++++++.+
T Consensus 656 -----l~~e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~ 730 (895)
T PRK10490 656 -----LASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSG 730 (895)
T ss_pred -----HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 11122456788999999999999999999999886432 23334567889999999999999999999999999
Q ss_pred CccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEe
Q 006508 435 RFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE 514 (642)
Q Consensus 435 ~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~ 514 (642)
...++.+++++.+++++++..+......++ +.++++.++| .+.+|+..+.||+.||++||+||+++++.|.|++...
T Consensus 731 ~~~l~~~~~~L~eli~~~l~~l~~~~~~~~--i~l~~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~ 807 (895)
T PRK10490 731 GFNLRKEWLTLEEVVGSALQMLEPGLSGHP--INLSLPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE 807 (895)
T ss_pred CCcccccccCHHHHHHHHHHHHHHHhcCCC--EEEEcCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe
Confidence 999999999999999999999988776664 4556677766 7999999999999999999999988889999988765
Q ss_pred cCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCC-CCCCCcchHHHHHHHHHHcCCEEEE
Q 006508 515 NGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGN-EGIEDRMSFSVCKKLVQLMQGNIWM 593 (642)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~G~GLGL~i~k~iv~~~gG~I~v 593 (642)
++. +.|+|.|+|+||+++..+++|++|++.... ...|+||||+|||++++.|||+|++
T Consensus 808 ~~~---------------------v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~~~~G~GLGL~Ivk~ive~hGG~I~v 866 (895)
T PRK10490 808 GER---------------------LQLDVWDNGPGIPPGQEQLIFDKFARGNKESAIPGVGLGLAICRAIVEVHGGTIWA 866 (895)
T ss_pred CCE---------------------EEEEEEECCCCCCHHHHHHhcCCCccCCCCCCCCCccHHHHHHHHHHHHcCCEEEE
Confidence 432 889999999999999999999999986542 3469999999999999999999999
Q ss_pred EecCCCCcEEEEEEEEeccCC
Q 006508 594 VPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 594 ~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
+|. +|+||+|+|.||...++
T Consensus 867 ~s~-~~~Gt~f~i~LPl~~~~ 886 (895)
T PRK10490 867 ENR-PEGGACFRVTLPLETPP 886 (895)
T ss_pred EEC-CCCeEEEEEEeECCCCC
Confidence 999 58899999999986443
No 3
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=3.9e-40 Score=385.95 Aligned_cols=462 Identities=12% Similarity=0.129 Sum_probs=325.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhcCCHH--HHHH
Q 006508 113 LTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRH--TILY 190 (642)
Q Consensus 113 ~~~~~~~ta~v~~~~ai~l~~lip~~l~~~~~e~~l~~~~~~l~~e~~~~~~~~~~~~~l~~lt~~i~~s~d~~--~il~ 190 (642)
++...++..+++++.+++++.+ ..++++....+++|.+..+.+.+++..+..+.+.+ ..++
T Consensus 237 ~~~~Rl~l~~~~~~~~~~~~~l-----------------~~~~~~~~~~l~~r~~~e~~l~~l~~~~~~~~~~~~~~~~~ 299 (828)
T PRK13837 237 ARRVRLFLGAVSVALLGYIISL-----------------VLRLRARTRVLRRRAAFEEVIAAISRCFEAASPHELEASIE 299 (828)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3455566666666665555555 45556666667777888888999999988776555 8999
Q ss_pred HHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecC-ChhHHHHhhcCCceEeC-CCchhhhhccCCc
Q 006508 191 TTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPIT-DQDVVRIKGSDGVNILG-PDSELAAASSGES 268 (642)
Q Consensus 191 ~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~~~l~~~~~~~~ 268 (642)
.++..+.+.++++.|++++.+.++....... .... ....++.. ...+..........+.. .+... ......
T Consensus 300 ~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 372 (828)
T PRK13837 300 AALGILAKFFDADSAALALVDVGGRARIWTF--PGLT---PDPVWPDRLRALASTVKAAERDVVFVDRNGPV--RKRSCL 372 (828)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCeeeccC--CccC---CCCCchHHHHHHHHHHhccCCceEEeecccch--hhhccc
Confidence 9999999999999999998887654432111 0000 00111110 01111222222222221 11110 111122
Q ss_pred ccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 269 VESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNE-QFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMRE 347 (642)
Q Consensus 269 ~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~-~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~ 347 (642)
...++..++++|+...+...| ++++... ....+..+++.+++.++++++.++++.+..++.+++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~g-------------~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~ 439 (828)
T PRK13837 373 TRRGPALWACLAFKSGDRIVA-------------LLGLGRQRYGLRPPAGELQLLELALDCLAHAIERRRLETERDALER 439 (828)
T ss_pred ccCCcceEEEEEeccCCceEE-------------EEEecccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245677889999887665544 4444333 23345689999999999999999988887766655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 348 KLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV-NLNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 348 ~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
++++.++ .+.+++|++.++||+||||++|.++++++.+. ..+++.+++++.|.+.++++..++++++
T Consensus 440 ~l~~~~r------------l~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll 507 (828)
T PRK13837 440 RLEHARR------------LEAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQIL 507 (828)
T ss_pred HHHHHHH------------HHHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433211 23667899999999999999999999988753 3455678899999999999999999999
Q ss_pred hhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcE
Q 006508 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++...+ ..+++++.+++++++..++... .+++.+.++.+++.+ .+.+|+..+.||+.||++||+||++++|.
T Consensus 508 ~~sr~~~~----~~~~~~l~~ll~~~~~~~~~~~-~~~i~l~~~~~~~~~-~v~~d~~~L~qvl~NLl~NAik~~~~~g~ 581 (828)
T PRK13837 508 AFGRKGER----NTKPFDLSELVTEIAPLLRVSL-PPGVELDFDQDQEPA-VVEGNPAELQQVLMNLCSNAAQAMDGAGR 581 (828)
T ss_pred HHhCCCCC----CCcEEcHHHHHHHHHHHHHHHc-cCCcEEEEEeCCCCc-eEEECHHHHHHHHHHHHHHHHHHcccCCe
Confidence 99986543 4569999999999999887544 467888888776645 79999999999999999999999888999
Q ss_pred EEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHH
Q 006508 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQL 586 (642)
Q Consensus 507 I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~ 586 (642)
|.|++......... ....+...++.++.|+|+|+|+||+++..+++|++|++... .|+||||+|||++++.
T Consensus 582 I~I~~~~~~~~~~~------~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---~G~GLGL~i~~~iv~~ 652 (828)
T PRK13837 582 VDISLSRAKLRAPK------VLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---GGTGLGLATVHGIVSA 652 (828)
T ss_pred EEEEEEEeeccccc------ccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC---CCCcchHHHHHHHHHH
Confidence 99998765221100 00001112345689999999999999999999999997654 5999999999999999
Q ss_pred cCCEEEEEecCCCCcEEEEEEEEeccCCCCCCCCCCCCCCCCCcCCCCCccccccC
Q 006508 587 MQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 587 ~gG~I~v~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilivd 642 (642)
|||+|+++|. +|+||+|+|+||.....+...... .++......++.+|||||
T Consensus 653 ~gG~i~v~s~-~g~Gt~f~i~LP~~~~~~~~~~~~---~~~~~~~~~~~~~ILvVd 704 (828)
T PRK13837 653 HAGYIDVQST-VGRGTRFDVYLPPSSKVPVAPQAF---FGPGPLPRGRGETVLLVE 704 (828)
T ss_pred CCCEEEEEec-CCCeEEEEEEEeCCCCCCCCcccc---CCCcccCCCCCCEEEEEc
Confidence 9999999999 599999999999865433221111 112222334678899987
No 4
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-40 Score=323.24 Aligned_cols=226 Identities=15% Similarity=0.235 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHH--HHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeee
Q 006508 367 SQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSD--QRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFR 444 (642)
Q Consensus 367 ~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~--~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~ 444 (642)
++.+..|.+++||||||||+++.+|++.|.++...+. ..+++..-.++.+||.++++||+.+||++..+.+++.++++
T Consensus 222 e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~in 301 (459)
T COG5002 222 ERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWIN 301 (459)
T ss_pred HHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHH
Confidence 5578899999999999999999999999998765444 56889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCce-EEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccc
Q 006508 445 LHAMIKEAACLARCLSIYRGFG-FSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDK 523 (642)
Q Consensus 445 L~~li~~~~~~~~~~~~~~~i~-~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~ 523 (642)
+...+..+++.+....++.... +.-+++.. |.++..|++++.||+.|+++||+||+|+||+|++++...+.
T Consensus 302 ft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~-~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~------- 373 (459)
T COG5002 302 FTAFLNEIINRFEMILKKETIARFVRDIPKQ-DIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRET------- 373 (459)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhcCCCC-ceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCc-------
Confidence 9999999999998886655443 44445554 55899999999999999999999999999999999977543
Q ss_pred cccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC---CCCCCCcchHHHHHHHHHHcCCEEEEEecCCCC
Q 006508 524 KWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG---NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGF 600 (642)
Q Consensus 524 ~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~ 600 (642)
++.++|.|+|.|||.++.+++|+.|||... ++.+|+||||+|+|.||+.|||.||++|. .|+
T Consensus 374 --------------~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~-~gk 438 (459)
T COG5002 374 --------------WVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESE-EGK 438 (459)
T ss_pred --------------EEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEEecc-cCC
Confidence 399999999999999999999999998554 35679999999999999999999999999 799
Q ss_pred cEEEEEEEEeccCCC
Q 006508 601 AQSMGLVLRFQLRPS 615 (642)
Q Consensus 601 Gt~f~i~LP~~~~~~ 615 (642)
||+|+|+||....+.
T Consensus 439 gtt~~ftLPy~~~~~ 453 (459)
T COG5002 439 GTTFSFTLPYSGEAG 453 (459)
T ss_pred ceEEEEEecccCccc
Confidence 999999999876544
No 5
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=100.00 E-value=2.8e-36 Score=346.42 Aligned_cols=365 Identities=17% Similarity=0.171 Sum_probs=270.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHhhcCCce
Q 006508 173 RMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVN 252 (642)
Q Consensus 173 ~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (642)
.++++.++++.|.+++++.+++.+.+.++++.+++|+.++++..+.....++... .....+.+.+........+.+.
T Consensus 308 l~~~~~L~~~~~~~~l~~~~~~~l~~~l~~~~g~l~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~ 384 (679)
T TIGR02916 308 LRFTQTLSEARSSDDLGERVIRALAQLVESPGGVLWLKSGNDGLYRPAARWNQPL---AQAFEPSDSAFCQFLQESGWII 384 (679)
T ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHhCCCCceEEEEcCCCCEEeeehhcCCCC---cccCCCCCCHHHHHHHhCCCcc
Confidence 5688899999999999999999999999999999999988776555444333221 1123333344444444443333
Q ss_pred EeCCCchhhhhcc----CCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCC-CCCCCChHHHHHHHHHHH
Q 006508 253 ILGPDSELAAASS----GESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNE-QFRTWSNQELEIVKVVAD 327 (642)
Q Consensus 253 ~l~~~~~l~~~~~----~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~-~~~~~~~~e~~ll~~~a~ 327 (642)
...+......... .......+.+.+++|+...++..| ++++... ..+.++.++.++++.++.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vPL~~~~~~~G-------------~l~l~~~~~~~~~~~e~~~lL~~l~~ 451 (679)
T TIGR02916 385 NLEEARSEPDHYSGLVLPEWLREIPNAWLIVPLISGEELVG-------------FVVLARPRTAGEFNWEVRDLLKTAGR 451 (679)
T ss_pred cchhhcCCcccccccccchhhhcCCCceEEEEeccCCEEEE-------------EEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 2222111110000 111112355689999988776655 5555544 456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCH-HHHH
Q 006508 328 QVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNS-DQRM 406 (642)
Q Consensus 328 qva~al~~a~l~~e~~~~~~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~-~~~~ 406 (642)
|++.++++.+..++.++. ++ .+..+++.+.++||+|||++.+....+...+...++ .+++
T Consensus 452 q~a~~l~~~~~~~~l~~~--------------~~-----~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~ 512 (679)
T TIGR02916 452 QAASYLAQMEASEALAEA--------------RQ-----FEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDD 512 (679)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HH-----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHH
Confidence 999999887765443221 11 124456788999999999999988888776544444 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHH
Q 006508 407 IVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRV 486 (642)
Q Consensus 407 ~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l 486 (642)
+++.+.+..+++.++++++.+... +.+.+++++.++++++.+..+. .+..++++++++ + .+.+|+..+
T Consensus 513 ~l~~i~~~~~rl~~ll~~l~~~~~------~~~~~~~~l~~ll~~~~~~~~~----~~~~~~l~~~~~-~-~v~~d~~~l 580 (679)
T TIGR02916 513 MLETVENAVNRMKKLLAQLRSKGL------EEEKLCVDLVDLLRRAIASKRA----QGPRPEVSIDTD-L-SVRADRERL 580 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc------ccCCccccHHHHHHHHHHHhhh----hcCCceEEeCCC-c-eEEECHHHH
Confidence 889999999999999988865432 4556789999999998876543 223444555554 3 699999999
Q ss_pred HHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchh-hhhcccccccc
Q 006508 487 FQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEV-STSAAQLGIRR 565 (642)
Q Consensus 487 ~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~-~~~if~~f~~~ 565 (642)
.+++.||++||+||++++|.|+|++...++ ++.|+|+|||+||+++. .+++|++|+++
T Consensus 581 ~~vl~nLl~NAik~~~~~~~I~I~~~~~~~---------------------~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~ 639 (679)
T TIGR02916 581 ERVLGHLVQNALEATPGEGRVAIRVERECG---------------------AARIEIEDSGCGMSPAFIRERLFKPFDTT 639 (679)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEcCC---------------------EEEEEEEEcCCCcChHHHHHhcCCCCCCC
Confidence 999999999999998888999999976543 38899999999999999 99999999876
Q ss_pred CCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEE
Q 006508 566 IGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLR 609 (642)
Q Consensus 566 ~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP 609 (642)
++ .|+|+||++||++++.|||+|+++|. +|+||+|+++||
T Consensus 640 ~~---~G~GLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~f~i~LP 679 (679)
T TIGR02916 640 KG---AGMGIGVYECRQYVEEIGGRIEVEST-PGQGTIFTLVLP 679 (679)
T ss_pred CC---CCcchhHHHHHHHHHHcCCEEEEEec-CCCceEEEEEeC
Confidence 54 59999999999999999999999999 589999999998
No 6
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=1e-36 Score=356.71 Aligned_cols=251 Identities=20% Similarity=0.323 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeee
Q 006508 365 MASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFR 444 (642)
Q Consensus 365 ~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~ 444 (642)
++++.++.|++.||||+||||++|.|+++++.+...+++++++++.|..+++++..++++++++++++.+...++..+++
T Consensus 278 ~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~~ 357 (779)
T PRK11091 278 KASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQPID 357 (779)
T ss_pred HHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeeccC
Confidence 33557789999999999999999999999998888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCccccc
Q 006508 445 LHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKK 524 (642)
Q Consensus 445 L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~ 524 (642)
+.++++++...+...+..+++.+.++.+.++|..+.+|+.++.||+.||++||+||+ ++|.|.|++....+
T Consensus 358 l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~-~~g~v~i~~~~~~~-------- 428 (779)
T PRK11091 358 FTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFT-QQGGVTVRVRYEEG-------- 428 (779)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhC-CCCcEEEEEEEccC--------
Confidence 999999999999999999999999999888887799999999999999999999976 56778888876521
Q ss_pred ccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC----CCCCCCcchHHHHHHHHHHcCCEEEEEecCCCC
Q 006508 525 WATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG----NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGF 600 (642)
Q Consensus 525 ~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~ 600 (642)
..+.|+|.|+|+|||++..+++|++|++.++ ....|+||||+|||++|+.|||+|+++|. +|+
T Consensus 429 ------------~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~-~g~ 495 (779)
T PRK11091 429 ------------DMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSE-EGK 495 (779)
T ss_pred ------------CEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEec-CCC
Confidence 1389999999999999999999999998741 22469999999999999999999999999 599
Q ss_pred cEEEEEEEEeccCCCCCCCCCCCCCCCCCcCCCCCccccccC
Q 006508 601 AQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 601 Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilivd 642 (642)
||+|+|+||+...+.....++ .......++.+|||||
T Consensus 496 Gt~f~i~lP~~~~~~~~~~~~-----~~~~~~~~~~~ILivd 532 (779)
T PRK11091 496 GSCFTLTIHAPAVAEEVEDAF-----DEDDMPLPALNILLVE 532 (779)
T ss_pred eEEEEEEEecccccccccccc-----ccccccccccceEEEc
Confidence 999999999976544322211 1112234567899987
No 7
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=4.9e-38 Score=363.74 Aligned_cols=262 Identities=16% Similarity=0.235 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccC
Q 006508 353 NRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKD 432 (642)
Q Consensus 353 ~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e 432 (642)
+++++++++++++++++|++|+++||||+||||++|.++++++.+...+++++++++.|.++++++.+++++++++++++
T Consensus 433 ~~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle 512 (894)
T PRK10618 433 NKKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLE 512 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777888889999999999999999999999999998777788889999999999999999999999999999
Q ss_pred CCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEE
Q 006508 433 SGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVV 512 (642)
Q Consensus 433 ~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~ 512 (642)
.++.+++.+++++.+++++++..+.+.+..+++.+.++++.+.+..+.+|+.++.||+.||++||+||+ ++|.|+|++.
T Consensus 513 ~~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t-~~G~I~I~v~ 591 (894)
T PRK10618 513 TQDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTT-AYGKITLEVD 591 (894)
T ss_pred cCCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhC-CCCeEEEEEE
Confidence 999999999999999999999999999999999999888765555799999999999999999999965 5688888887
Q ss_pred EecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC--CCCCCCcchHHHHHHHHHHcCCE
Q 006508 513 SENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG--NEGIEDRMSFSVCKKLVQLMQGN 590 (642)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~--~~~~G~GLGL~i~k~iv~~~gG~ 590 (642)
...+ +..++.|+|.|+|+||+++.++++|+||++... +.+.|+||||+|||++|+.|||+
T Consensus 592 ~~~~------------------~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~k~Lve~~GG~ 653 (894)
T PRK10618 592 QDES------------------SPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFLCNQLCRKLGGH 653 (894)
T ss_pred EccC------------------CCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHHHHHHHHHcCCE
Confidence 5432 123589999999999999999999999987553 23469999999999999999999
Q ss_pred EEEEecCCCCcEEEEEEEEeccCCCCCCCCCCCCCCCCCcCCCCCccccccC
Q 006508 591 IWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 591 I~v~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilivd 642 (642)
|+++|. +|+||+|+|+||+...+.... ......+.|.+|||||
T Consensus 654 I~v~S~-~g~GT~F~I~LPl~~~~~~~~--------~~~~~~l~g~~vLlvd 696 (894)
T PRK10618 654 LTIKSR-EGLGTRYSIHLKMLAADPEVE--------EEEEKLLDGVTVLLDI 696 (894)
T ss_pred EEEEEC-CCCcEEEEEEEEccCCccccc--------ccccccCCCCEEEEEe
Confidence 999999 599999999999963322111 1112346788999985
No 8
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=7.7e-36 Score=319.46 Aligned_cols=235 Identities=14% Similarity=0.256 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006508 355 ALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLN-------SDQRMIVETMMKSSNVLSTLISDVMD 427 (642)
Q Consensus 355 ~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~-------~~~~~~l~~i~~~~~~l~~li~~ll~ 427 (642)
.++++++++.+..+.++.|++.+|||+||||++|.++++++.+...+ +..+++++.+.+..+++.++++++++
T Consensus 136 ~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~ 215 (380)
T PRK09303 136 VLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLE 215 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666677889999999999999999999999999853222 33677899999999999999999999
Q ss_pred hCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEE
Q 006508 428 NSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTV 507 (642)
Q Consensus 428 ~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I 507 (642)
+++.+.+...++.+++++.+++++++..+...+..+++.+.++++.++| .+.+|+.++.||+.||++||+||++++|.|
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik~~~~~~~I 294 (380)
T PRK09303 216 VGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIKYTPEGGTI 294 (380)
T ss_pred HHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 9999999998899999999999999999999999999999999988877 799999999999999999999999889999
Q ss_pred EEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC-CCCCCCcchHHHHHHHHHH
Q 006508 508 LFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG-NEGIEDRMSFSVCKKLVQL 586 (642)
Q Consensus 508 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~ 586 (642)
.+.+....+ .++.|+|.|+|+||+++..+++|++|++... ....|+||||+|||++++.
T Consensus 295 ~i~~~~~~~--------------------~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~~~~~~G~GLGL~i~~~iv~~ 354 (380)
T PRK09303 295 TLSMLHRTT--------------------QKVQVSICDTGPGIPEEEQERIFEDRVRLPRDEGTEGYGIGLSVCRRIVRV 354 (380)
T ss_pred EEEEEecCC--------------------CEEEEEEEEcCCCCCHHHHHHHccCceeCCCCCCCCcccccHHHHHHHHHH
Confidence 888754322 2488999999999999999999999998654 3346999999999999999
Q ss_pred cCCEEEEEecCCCCcEEEEEEEEec
Q 006508 587 MQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 587 ~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
|||+|+++|. +|+|++|+|+||+.
T Consensus 355 ~gG~i~v~s~-~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 355 HYGQIWVDSE-PGQGSCFHFTLPVY 378 (380)
T ss_pred cCCEEEEEec-CCCccEEEEEEecC
Confidence 9999999999 58899999999975
No 9
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=1.9e-35 Score=347.14 Aligned_cols=237 Identities=22% Similarity=0.337 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCC
Q 006508 354 RALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDS 433 (642)
Q Consensus 354 ~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~ 433 (642)
+++++++++++++++.++.|++.+||||||||++|.|++++++....+++++++++.|.++++++..+|++++++++++.
T Consensus 431 ~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~ 510 (924)
T PRK10841 431 ESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIES 510 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555666677778889999999999999999999999999988888888999999999999999999999999999999
Q ss_pred CCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEE
Q 006508 434 GRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVS 513 (642)
Q Consensus 434 ~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~ 513 (642)
+..+++.+++++.+++++++..+.+.+..+++.+.++++++.|..+.+|+.++.||+.||++||+||+ ++|.|.|++..
T Consensus 511 ~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t-~~G~I~I~v~~ 589 (924)
T PRK10841 511 EQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFT-DTGCIVLHVRV 589 (924)
T ss_pred CCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEE
Confidence 99999999999999999999999999999999999999888786799999999999999999999975 56778888876
Q ss_pred ecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC---CCCCCCcchHHHHHHHHHHcCCE
Q 006508 514 ENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG---NEGIEDRMSFSVCKKLVQLMQGN 590 (642)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~G~GLGL~i~k~iv~~~gG~ 590 (642)
.++ ++.|+|.|+|+||+++..+++|++|++... ....|+||||+|||++++.|||+
T Consensus 590 ~~~---------------------~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~ 648 (924)
T PRK10841 590 DGD---------------------YLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGD 648 (924)
T ss_pred eCC---------------------EEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCCCE
Confidence 533 389999999999999999999999987543 23469999999999999999999
Q ss_pred EEEEecCCCCcEEEEEEEEeccC
Q 006508 591 IWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 591 I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
|+++|. +|.||+|+|.||+...
T Consensus 649 I~v~S~-~g~Gt~F~i~LP~~~~ 670 (924)
T PRK10841 649 ISVDSE-PGMGSQFTIRIPLYGA 670 (924)
T ss_pred EEEEEc-CCCcEEEEEEEECCcc
Confidence 999999 5999999999998743
No 10
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=6.2e-35 Score=348.34 Aligned_cols=273 Identities=23% Similarity=0.319 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 345 MREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISD 424 (642)
Q Consensus 345 ~~~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ 424 (642)
..++++.++.++..++++++++++.+.+|++.+|||+||||++|.|+++.+.+...+++++++++.|.++++++..++++
T Consensus 268 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ 347 (919)
T PRK11107 268 TLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIIND 347 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556677788888889999999999999999999999999999999988778888999999999999999999999
Q ss_pred HHhhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCC
Q 006508 425 VMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR 504 (642)
Q Consensus 425 ll~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~ 504 (642)
++++++++.+...++..++++.+++++++..+...+..+++.+.++++++.|..+.+|+.++.||+.||++||+||++ +
T Consensus 348 ll~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~-~ 426 (919)
T PRK11107 348 ILDFSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTE-S 426 (919)
T ss_pred HHHHHHHhcCCcEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCC-C
Confidence 999999999999999999999999999999999999999999999998888877999999999999999999999754 5
Q ss_pred cEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC---CCCCCCcchHHHHH
Q 006508 505 GTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG---NEGIEDRMSFSVCK 581 (642)
Q Consensus 505 g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~G~GLGL~i~k 581 (642)
|.|.|++...... ++..++.|+|.|+|+||+++.++++|++|++... ++.+|+||||+|||
T Consensus 427 g~v~i~v~~~~~~----------------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~ 490 (919)
T PRK11107 427 GNIDILVELRALS----------------NTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQ 490 (919)
T ss_pred CcEEEEEEEEecC----------------CCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHH
Confidence 6677776654321 2334689999999999999999999999987443 23469999999999
Q ss_pred HHHHHcCCEEEEEecCCCCcEEEEEEEEeccCCCCCCCCCCCCCCCCCcCCCCCccccccC
Q 006508 582 KLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 582 ~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilivd 642 (642)
++++.|||+|+++|. +|+||+|+|+||+...+... ....+...+.|.+|+|+|
T Consensus 491 ~i~~~~gG~i~v~s~-~~~Gt~f~i~lp~~~~~~~~-------~~~~~~~~~~g~~ili~d 543 (919)
T PRK11107 491 KLVNEMGGDISFHSQ-PNRGSTFWFHLPLDLNPNPI-------IDGLPTDCLAGKRLLYVE 543 (919)
T ss_pred HHHHHhCCEEEEEec-CCCCEEEEEEEEeccCCccc-------cccCCccccCCCeEEEEe
Confidence 999999999999999 59999999999997544321 112334567788998876
No 11
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=7.8e-35 Score=349.20 Aligned_cols=260 Identities=22% Similarity=0.400 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCC
Q 006508 355 ALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (642)
Q Consensus 355 ~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~ 434 (642)
..++++++++++++++..|++.|||||||||++|.|+++++.+...+++++++++.|.+.++++..++++++++++++.+
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~ 528 (968)
T TIGR02956 449 NHAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAG 528 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556777888899999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEe
Q 006508 435 RFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE 514 (642)
Q Consensus 435 ~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~ 514 (642)
...++.+++++.+++++++..+...+..+++.+.++++++.|..+.+|+.++.||+.||++||+||+ ++|.|+|++...
T Consensus 529 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~-~~g~i~i~~~~~ 607 (968)
T TIGR02956 529 HLSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFT-DRGSVVLRVSLN 607 (968)
T ss_pred CCeeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhC-CCCeEEEEEEEc
Confidence 9999999999999999999999999999999999999888787889999999999999999999965 567888888765
Q ss_pred cCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCC-CCCCcchHHHHHHHHHHcCCEEEE
Q 006508 515 NGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNE-GIEDRMSFSVCKKLVQLMQGNIWM 593 (642)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~-~~G~GLGL~i~k~iv~~~gG~I~v 593 (642)
++. .+.|+|.|+|+|||++..+++|++|++..... ..|+||||+|||++++.|||+|++
T Consensus 608 ~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~g~GLGL~i~~~l~~~~gG~i~~ 667 (968)
T TIGR02956 608 DDS--------------------SLLFEVEDTGCGIAEEEQATLFDAFTQADGRRRSGGTGLGLAISQRLVEAMDGELGV 667 (968)
T ss_pred CCC--------------------eEEEEEEeCCCCCCHHHHHHHHhhhhccCCCCCCCCccHHHHHHHHHHHHcCCEEEE
Confidence 321 18899999999999999999999999876422 369999999999999999999999
Q ss_pred EecCCCCcEEEEEEEEeccCCCCCCCCCCCCCCCCCcCCCCCccccccC
Q 006508 594 VPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 594 ~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilivd 642 (642)
+|. +|+||+|+|+||+...++...... .....+.+.+|||||
T Consensus 668 ~s~-~~~Gt~f~~~lp~~~~~~~~~~~~------~~~~~~~~~~iLvvd 709 (968)
T TIGR02956 668 ESE-LGVGSCFWFTLPLTRGKPAEDSAT------LTVIDLPPQRVLLVE 709 (968)
T ss_pred Eec-CCCcEEEEEEEEcCCCCccccccc------cccccccccceEEEc
Confidence 999 599999999999975443221111 122345667899987
No 12
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-33 Score=294.22 Aligned_cols=233 Identities=15% Similarity=0.241 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 006508 355 ALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQD---VNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPK 431 (642)
Q Consensus 355 ~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~---~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~ 431 (642)
++.+.+.+++++|....+|...+|||||+||+.|.+++++|.+ +..+++.++++..+.+.+..+.++|++++.++++
T Consensus 509 ela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l 588 (750)
T COG4251 509 ELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKL 588 (750)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3344445667777778899999999999999999999999975 4678899999999999999999999999999998
Q ss_pred CCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCC-cEEEEE
Q 006508 432 DSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR-GTVLFR 510 (642)
Q Consensus 432 e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~-g~I~i~ 510 (642)
+.-.. ..++.|+.+++++++..+.......++.+.+ .+ +| .+.+|+.++.||+.||+.||+||..++ ..|.|+
T Consensus 589 ~~~~~--~l~~td~~~vv~~vl~~l~~ri~dtgaei~i--~~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~ 662 (750)
T COG4251 589 GLTEA--PLQPTDVQKVVDKVLLELSQRIADTGAEIRI--AP-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIEIS 662 (750)
T ss_pred ccccC--CCCCcchHHHHHHHHHhcccccccccceEEe--cc-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceEEe
Confidence 65544 4459999999999999999988888777765 34 78 799999999999999999999986655 677887
Q ss_pred EEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCC-CCCCCcchHHHHHHHHHHcCC
Q 006508 511 VVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGN-EGIEDRMSFSVCKKLVQLMQG 589 (642)
Q Consensus 511 v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~G~GLGL~i~k~iv~~~gG 589 (642)
....++. +.+.|.|||.||+++.++++|..|.|.+.. ...|+|+||+|||+|+|.|+|
T Consensus 663 ~~r~ed~---------------------~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H~G 721 (750)
T COG4251 663 AERQEDE---------------------WTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQG 721 (750)
T ss_pred eeccCCc---------------------eEEEecCCCCCcCHHHHHHHHHHHHhcCchhhhcCCCccHHHHHHHHHHhCc
Confidence 6655443 889999999999999999999999886653 346899999999999999999
Q ss_pred EEEEEecCCCCcEEEEEEEEeccCCC
Q 006508 590 NIWMVPSSHGFAQSMGLVLRFQLRPS 615 (642)
Q Consensus 590 ~I~v~s~~~g~Gt~f~i~LP~~~~~~ 615 (642)
+||++|+ +|.|+||.+++|.....+
T Consensus 722 ~i~vEs~-~gEgsTF~f~lp~~~~e~ 746 (750)
T COG4251 722 RIWVEST-PGEGSTFYFTLPVGGEEP 746 (750)
T ss_pred eEEEeec-CCCceeEEEEeecCCcCc
Confidence 9999999 599999999999875544
No 13
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=9e-35 Score=346.95 Aligned_cols=243 Identities=18% Similarity=0.304 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 346 REKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDV 425 (642)
Q Consensus 346 ~~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~l 425 (642)
++++.++.+++++++++++++++.+..|++.+||||||||++|.|+++++.+...+++++++++.+...++++..+++++
T Consensus 374 ~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~l 453 (921)
T PRK15347 374 ENKVAERTQALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNL 453 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777788888888889999999999999999999999999999988888999999999999999999999999
Q ss_pred HhhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCc
Q 006508 426 MDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG 505 (642)
Q Consensus 426 l~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g 505 (642)
+++++++.+...++.+++++.++++++...+...+..+++.+.+.+++++|..+.+|+.++.||+.||++||+||+ ++|
T Consensus 454 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~-~~g 532 (921)
T PRK15347 454 LDFSRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFT-ETG 532 (921)
T ss_pred HHHHHHhcCCccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcC-CCC
Confidence 9999999999999999999999999999999999999999999999888887899999999999999999999975 556
Q ss_pred EEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHH
Q 006508 506 TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQ 585 (642)
Q Consensus 506 ~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~ 585 (642)
.|+|++...++ ++.|+|+|+|+||+++.++++|++|++.... ..|+||||+|||++++
T Consensus 533 ~I~i~~~~~~~---------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~g~GLGL~i~~~~~~ 590 (921)
T PRK15347 533 GIRLRVKRHEQ---------------------QLCFTVEDTGCGIDIQQQQQIFTPFYQADTH-SQGTGLGLTIASSLAK 590 (921)
T ss_pred CEEEEEEEcCC---------------------EEEEEEEEcCCCCCHHHHHHHhcCcccCCCC-CCCCchHHHHHHHHHH
Confidence 78888876543 3899999999999999999999999986653 3599999999999999
Q ss_pred HcCCEEEEEecCCCCcEEEEEEEEecc
Q 006508 586 LMQGNIWMVPSSHGFAQSMGLVLRFQL 612 (642)
Q Consensus 586 ~~gG~I~v~s~~~g~Gt~f~i~LP~~~ 612 (642)
.|||+|+++|. +|+||+|+|.||+..
T Consensus 591 ~~gG~i~i~s~-~~~Gt~f~i~lp~~~ 616 (921)
T PRK15347 591 MMGGELTLFST-PGVGSCFSLVLPLNE 616 (921)
T ss_pred HcCCEEEEEec-CCCceEEEEEEECCC
Confidence 99999999999 699999999999865
No 14
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=1.5e-34 Score=344.55 Aligned_cols=271 Identities=21% Similarity=0.296 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q 006508 342 SQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTL 421 (642)
Q Consensus 342 ~~~~~~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~l 421 (642)
.+...+++++...++++++.+.+++++++..|++.||||+||||++|.|+++++.+...+++++++++.|.+.++++..+
T Consensus 416 v~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~l 495 (914)
T PRK11466 416 VKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTI 495 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555666777788888889999999999999999999999999999988878888999999999999999999
Q ss_pred HHHHHhhCccCCCC--ccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhc
Q 006508 422 ISDVMDNSPKDSGR--FPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLN 499 (642)
Q Consensus 422 i~~ll~~s~~e~~~--~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik 499 (642)
+++++++++++.+. ..++.+++++.+++++++..+...+..+++.+.+++++++|..+.+|+.++.||+.||++||+|
T Consensus 496 i~~ll~~s~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik 575 (914)
T PRK11466 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALR 575 (914)
T ss_pred HHHHHHHHHHhCCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHH
Confidence 99999999998874 5567789999999999999999999999999999998888877999999999999999999999
Q ss_pred ccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHH
Q 006508 500 CNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSV 579 (642)
Q Consensus 500 ~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i 579 (642)
|+ ++|.|.|++...++ .+.|.|.|+|+||+++..+++|+||++... ...|+||||+|
T Consensus 576 ~~-~~g~I~i~~~~~~~---------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~g~GLGL~i 632 (914)
T PRK11466 576 FT-DEGSIVLRSRTDGE---------------------QWLVEVEDSGCGIDPAKLAEIFQPFVQVSG-KRGGTGLGLTI 632 (914)
T ss_pred hC-CCCeEEEEEEEcCC---------------------EEEEEEEECCCCCCHHHHHHHhchhhcCCC-CCCCCcccHHH
Confidence 75 56788888865533 388999999999999999999999997654 34599999999
Q ss_pred HHHHHHHcCCEEEEEecCCCCcEEEEEEEEeccCCCCCCCCCCCCCCCCCcCCCCCccccccC
Q 006508 580 CKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 580 ~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilivd 642 (642)
||++++.|||+|+++|. +|.||+|+|.||+......+... ........+.+|||||
T Consensus 633 ~~~l~~~~gG~i~v~s~-~~~Gt~f~i~lP~~~~~~~~~~~------~~~~~~~~~~~vLivd 688 (914)
T PRK11466 633 SSRLAQAMGGELSATST-PEVGSCFCLRLPLRVATAPVPKT------VNQAVRLDGLRLLLIE 688 (914)
T ss_pred HHHHHHHcCCEEEEEec-CCCCeEEEEEEEccccccccccc------cccccccCCcceEEEe
Confidence 99999999999999999 58899999999987543322111 1112234678899987
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=5.4e-32 Score=295.24 Aligned_cols=219 Identities=20% Similarity=0.223 Sum_probs=189.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHH
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNL-NSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHA 447 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~ 447 (642)
.+.+|++.++||+||||++|.++++++.+... ++..+++++.|.+.++++..++++++++++.+.+......+++++..
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~ 282 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPM 282 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHH
Confidence 55679999999999999999999999986543 45567889999999999999999999999998887766678999999
Q ss_pred HHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccc
Q 006508 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWAT 527 (642)
Q Consensus 448 li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~ 527 (642)
+++.+........ .+++.+.+++++++ .+.+|+.++.|++.||++||+||+++++.|.|++...++.
T Consensus 283 ~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~~---------- 349 (430)
T PRK11006 283 MLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPQG---------- 349 (430)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCE----------
Confidence 9998877776655 56778888877664 4899999999999999999999988888999888665432
Q ss_pred cccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC---CCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEE
Q 006508 528 WRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG---NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSM 604 (642)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f 604 (642)
+.|+|.|+|+||+++..+++|++|++... .+..|+||||+|||++++.|||+|+++|. +|+||+|
T Consensus 350 -----------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~-~~~Gt~f 417 (430)
T PRK11006 350 -----------AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESE-VGKGTRF 417 (430)
T ss_pred -----------EEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEec-CCCceEE
Confidence 88999999999999999999999987543 23358999999999999999999999999 5899999
Q ss_pred EEEEEecc
Q 006508 605 GLVLRFQL 612 (642)
Q Consensus 605 ~i~LP~~~ 612 (642)
+|+||...
T Consensus 418 ~i~lP~~~ 425 (430)
T PRK11006 418 SFVLPERL 425 (430)
T ss_pred EEEechHh
Confidence 99999764
No 16
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=1.1e-31 Score=328.36 Aligned_cols=266 Identities=17% Similarity=0.262 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhhCccCCC
Q 006508 356 LQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQ-RMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (642)
Q Consensus 356 L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~-~~~l~~i~~~~~~l~~li~~ll~~s~~e~~ 434 (642)
++++++++.++++++++|++.++|||||||++|.|+++++.+...++++ .++++.+...++++..++++++++++++.+
T Consensus 698 l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~ 777 (1197)
T PRK09959 698 LEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESG 777 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3444444555567889999999999999999999999999765554444 578999999999999999999999999999
Q ss_pred CccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEe
Q 006508 435 RFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE 514 (642)
Q Consensus 435 ~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~ 514 (642)
...+..+++++.+++++++..+...+..+++.+.+..+.+.+..+.+|+.++.||+.||++||+||++ +|.+.+.+...
T Consensus 778 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~-~g~i~i~~~~~ 856 (1197)
T PRK09959 778 NYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTT-EGAVKITTSLG 856 (1197)
T ss_pred CceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEe
Confidence 99999999999999999999999999999988887654322236899999999999999999999765 45556655432
Q ss_pred cCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCC-CCCCCcchHHHHHHHHHHcCCEEEE
Q 006508 515 NGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGN-EGIEDRMSFSVCKKLVQLMQGNIWM 593 (642)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~G~GLGL~i~k~iv~~~gG~I~v 593 (642)
.. .++...+.|+|.|+|+||+++..+++|++|++.... ...|+||||+|||++++.|||+|++
T Consensus 857 ~~----------------~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v 920 (1197)
T PRK09959 857 HI----------------DDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSL 920 (1197)
T ss_pred ee----------------cCCceEEEEEEEEcCCCCCHHHHHHhhccccccccCCCCCCcCchHHHHHHHHHHcCCEEEE
Confidence 11 123345889999999999999999999999886542 3459999999999999999999999
Q ss_pred EecCCCCcEEEEEEEEeccCCCCCCCCCCCCCCCCCcCCCCCccccccC
Q 006508 594 VPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 594 ~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilivd 642 (642)
+|. +|+||+|+|+||+...+......+... .+.......+|||||
T Consensus 921 ~s~-~~~Gt~f~i~lP~~~~~~~~~~~~~~~---~~~~~~~~~~iLivd 965 (1197)
T PRK09959 921 ESH-PGIGTTFTITIPVEISQQVATVEAKAE---QPITLPEKLSILIAD 965 (1197)
T ss_pred EeC-CCCcEEEEEEEEccccchhcccccccc---cccccccCceEEEcC
Confidence 999 589999999999865433211111111 111223557899987
No 17
>PRK10364 sensor protein ZraS; Provisional
Probab=100.00 E-value=6.8e-29 Score=273.07 Aligned_cols=214 Identities=15% Similarity=0.261 Sum_probs=190.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHH
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHA 447 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~ 447 (642)
..+++.+.++||+||||++|.++++++.+.. ..++.++.++.|.+..+++..++++++++++.. .....++++++
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 4567899999999999999999999987643 345667888999999999999999999998843 34567999999
Q ss_pred HHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccc
Q 006508 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWAT 527 (642)
Q Consensus 448 li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~ 527 (642)
++++++..+...+..+++.++++.+++.+ .+.+|+.++.|++.||++||+||.++++.|.|++...++.
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~---------- 380 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGAG---------- 380 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCe----------
Confidence 99999999999999999999999887766 6899999999999999999999988889999998766443
Q ss_pred cccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEE
Q 006508 528 WRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
+.|+|+|+|+||+++..+++|++|++.+. .|+|+||++||++++.|||+|+++|. +|.||+|++.
T Consensus 381 -----------~~i~V~D~G~Gi~~~~~~~if~~~~~~k~---~g~GlGL~iv~~~v~~~gG~i~i~s~-~~~Gt~f~i~ 445 (457)
T PRK10364 381 -----------VKISVTDSGKGIAADQLEAIFTPYFTTKA---EGTGLGLAVVHNIVEQHGGTIQVASQ-EGKGATFTLW 445 (457)
T ss_pred -----------EEEEEEECCCCCCHHHHHHHhCccccCCC---CCCcccHHHHHHHHHHCCCEEEEEeC-CCCcEEEEEE
Confidence 89999999999999999999999986543 48999999999999999999999999 5889999999
Q ss_pred EEecc
Q 006508 608 LRFQL 612 (642)
Q Consensus 608 LP~~~ 612 (642)
||...
T Consensus 446 lP~~~ 450 (457)
T PRK10364 446 LPVNI 450 (457)
T ss_pred ecCCC
Confidence 99863
No 18
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-30 Score=274.41 Aligned_cols=214 Identities=14% Similarity=0.177 Sum_probs=189.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHH---HhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeH
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSI---MQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRL 445 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~l---L~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L 445 (642)
..+++.++++||+++||++|.++++. |.+....++.++.+..|..-.+||-.+.++|..|++...+. ..++.+
T Consensus 383 ~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l 458 (603)
T COG4191 383 ALGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSL 458 (603)
T ss_pred HHHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccH
Confidence 45789999999999999999998875 44566788889999999999999999999999999975443 569999
Q ss_pred HHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhccc--CCCcEEEEEEEEecCCCCcccc
Q 006508 446 HAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCN--SRRGTVLFRVVSENGSQDRNDK 523 (642)
Q Consensus 446 ~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~--~~~g~I~i~v~~~~~~~~~~~~ 523 (642)
.++|+++...+....+..+..+..+.++..+ +|++|+.+|+|||.|||.||+++. ++.+.|.|++..+++.
T Consensus 459 ~~ai~~Al~ll~~R~~~~~~~l~~~~~~~~~-~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~------ 531 (603)
T COG4191 459 REAIEGALELLRGRLRAAGVELELDLPDAPL-WVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQ------ 531 (603)
T ss_pred HHHHHHHHHHHHHhhhccCceeeccCCCCCc-eeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCe------
Confidence 9999999999999999999999988877645 899999999999999999999975 4467888888777654
Q ss_pred cccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEE
Q 006508 524 KWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQS 603 (642)
Q Consensus 524 ~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~ 603 (642)
+.++|.|||+||+++...++|+||++++. .+.|.||||+||+.|++.+||+|.+.+. ++.|+.
T Consensus 532 ---------------v~l~VrDnGpGi~~e~~~~lFePF~TtK~-~~~GLGLGLaIS~~i~~d~GGsL~v~n~-~~~Ga~ 594 (603)
T COG4191 532 ---------------VVLTVRDNGPGIAPEALPHLFEPFFTTKP-VGKGLGLGLAISQNIARDLGGSLEVANH-PEGGAS 594 (603)
T ss_pred ---------------EEEEEccCCCCCCHHHHHhhcCCccccCc-ccCCcchhHHHHHHHHHHhCCeEEeecC-CCCceE
Confidence 99999999999999999999999998774 3459999999999999999999999988 477999
Q ss_pred EEEEEEe
Q 006508 604 MGLVLRF 610 (642)
Q Consensus 604 f~i~LP~ 610 (642)
|+|.||.
T Consensus 595 F~i~L~~ 601 (603)
T COG4191 595 FTIELRR 601 (603)
T ss_pred EEEEeec
Confidence 9999984
No 19
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=100.00 E-value=5.1e-31 Score=291.91 Aligned_cols=216 Identities=13% Similarity=0.133 Sum_probs=171.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHH
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~l 448 (642)
...+++..++|++||||+.|.++++++.+...........+.+.+....+.+.++.+.++.. ........++|+.++
T Consensus 275 ~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~dl~~~ 351 (494)
T TIGR02938 275 AIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP---QSPQEIVVPVNLNQI 351 (494)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc---cCcccccccccHHHH
Confidence 34566788889999999999999999876433322233334444444444444444444432 122344579999999
Q ss_pred HHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCc----EEEEEEEEecCCCCccccc
Q 006508 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG----TVLFRVVSENGSQDRNDKK 524 (642)
Q Consensus 449 i~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g----~I~i~v~~~~~~~~~~~~~ 524 (642)
+++++..+...+..+++.+.++.+.++| .+.+|+.++.||+.||++||+||+++++ .|.|.+...++
T Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~-------- 422 (494)
T TIGR02938 352 LRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALNGD-------- 422 (494)
T ss_pred HHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCC--------
Confidence 9999999998888999999999888888 7999999999999999999999976663 35555443322
Q ss_pred ccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEE
Q 006508 525 WATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSM 604 (642)
Q Consensus 525 ~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f 604 (642)
++.|+|+|||+|||++...++|++|++.+.....|+||||+|||++|+.|||+|+++|. +|+||+|
T Consensus 423 -------------~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~G~GlGL~i~~~iv~~~gG~i~~~s~-~~~G~~f 488 (494)
T TIGR02938 423 -------------LIVVSILDSGPGIPQDLRYKVFEPFFTTKGGSRKHIGMGLSVAQEIVADHGGIIDLDDD-YSEGCRI 488 (494)
T ss_pred -------------EEEEEEEeCCCCCCHHHHHHhcCCCcccCCCCCCCCcccHHHHHHHHHHcCCEEEEEEC-CCCCEEE
Confidence 48899999999999999999999999877655679999999999999999999999999 5999999
Q ss_pred EEEEEe
Q 006508 605 GLVLRF 610 (642)
Q Consensus 605 ~i~LP~ 610 (642)
+|+||+
T Consensus 489 ~i~lp~ 494 (494)
T TIGR02938 489 IVEFRV 494 (494)
T ss_pred EEEecC
Confidence 999995
No 20
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=2e-30 Score=250.89 Aligned_cols=223 Identities=15% Similarity=0.258 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHH
Q 006508 368 QARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHA 447 (642)
Q Consensus 368 ~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~ 447 (642)
++-..+.++++||+||||..|.|.+++|...-.++..++|.+-|.++++|+.++++.+.-++. +-+.+..|+++|.
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHH
Confidence 355678899999999999999999999988766666899999999999999999999866653 3455667999999
Q ss_pred HHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccC----CCcEEEEEEEEecCCCCcccc
Q 006508 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNS----RRGTVLFRVVSENGSQDRNDK 523 (642)
Q Consensus 448 li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~----~~g~I~i~v~~~~~~~~~~~~ 523 (642)
+++.+...++..+. .++.+.-+.++++| .+.+|+++|.|++.||+.||+.+.. .+|.|+++.+..-.-
T Consensus 206 VLerV~~lv~~e~~-~~i~l~rdYDPSLP-~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~------ 277 (363)
T COG3852 206 VLERVRALVEAEFA-DNVRLIRDYDPSLP-EVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL------ 277 (363)
T ss_pred HHHHHHHHHhcccC-CceEEeecCCCCCc-cccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE------
Confidence 99999887776554 55889999999999 6999999999999999999999743 348888877432110
Q ss_pred cccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEE
Q 006508 524 KWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQS 603 (642)
Q Consensus 524 ~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~ 603 (642)
+....-....+.++|.|||+|+|++..+++|.||.+++. .|+||||+++++++..|||.|+++|.| | .|+
T Consensus 278 -----~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~---~GsGLGLala~~li~qH~G~Ie~~S~P-g-~T~ 347 (363)
T COG3852 278 -----TIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGRE---GGTGLGLALAQNLIDQHGGKIEFDSWP-G-RTV 347 (363)
T ss_pred -----EccCceeEeeeeeEEecCCCCCChHHhhhccccccccCC---CCccccHHHHHHHHHhcCCEEEEeccC-C-ceE
Confidence 000001223367889999999999999999999987654 499999999999999999999999994 6 799
Q ss_pred EEEEEEecc
Q 006508 604 MGLVLRFQL 612 (642)
Q Consensus 604 f~i~LP~~~ 612 (642)
|++.+|...
T Consensus 348 FrvllP~~~ 356 (363)
T COG3852 348 FRVLLPIRK 356 (363)
T ss_pred EEEEeeccc
Confidence 999999986
No 21
>PRK10604 sensor protein RstB; Provisional
Probab=99.97 E-value=5.5e-30 Score=279.38 Aligned_cols=230 Identities=11% Similarity=0.097 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 006508 352 QNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPK 431 (642)
Q Consensus 352 ~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~ 431 (642)
....+.+..++.++..+.+.+|.+.+|||+||||+.|.+.++++.+. +++.. +.+.+..+++..++++++.++++
T Consensus 194 L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~---~~i~~~~~~l~~li~~ll~~~rl 268 (433)
T PRK10604 194 LGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAES---QALNRDIGQLEALIEELLTYARL 268 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444455555566778899999999999999999999888632 22222 23778889999999999999999
Q ss_pred CCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEE
Q 006508 432 DSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRV 511 (642)
Q Consensus 432 e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v 511 (642)
+.+..+...+++++.+++++++..++.....+++.+.+ +.+ +..+.+|+..+.+++.||++||+||. ++.|.|++
T Consensus 269 ~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~--~~~-~~~~~~d~~~l~~vl~NLl~NAik~~--~~~I~I~~ 343 (433)
T PRK10604 269 DRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDT--PHQ-GDYGALDMRLMERVLDNLLNNALRYA--HSRVRVSL 343 (433)
T ss_pred cCCCcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEe--cCC-CceEecCHHHHHHHHHHHHHHHHHhC--CCeEEEEE
Confidence 99988888999999999999999988877777655554 333 22578899999999999999999975 47788888
Q ss_pred EEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCC---CCCCCcchHHHHHHHHHHcC
Q 006508 512 VSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGN---EGIEDRMSFSVCKKLVQLMQ 588 (642)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~~G~GLGL~i~k~iv~~~g 588 (642)
...++. +.|+|+|+|+||+++..+++|++|++...+ +..|+||||+|||++++.||
T Consensus 344 ~~~~~~---------------------~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~g 402 (433)
T PRK10604 344 LLDGNQ---------------------ACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMG 402 (433)
T ss_pred EEECCE---------------------EEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHHCC
Confidence 766432 889999999999999999999999985432 23589999999999999999
Q ss_pred CEEEEEecCCCCcEEEEEEEEeccC
Q 006508 589 GNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 589 G~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
|+|++++. +++|++|++.+|...+
T Consensus 403 G~i~v~s~-~~~G~~f~i~lP~~~~ 426 (433)
T PRK10604 403 GSVNCDES-ELGGARFSFSWPVWHN 426 (433)
T ss_pred CEEEEEec-CCCeeEEEEEEeCCCC
Confidence 99999999 5889999999998743
No 22
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.97 E-value=8.1e-30 Score=280.85 Aligned_cols=234 Identities=11% Similarity=0.117 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006508 349 LEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMD 427 (642)
Q Consensus 349 l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~ 427 (642)
+....+.+.+..++.++..+...+|++.++|||||||++|.++++.+.+.. .+. .+....+.+...++.++++++++
T Consensus 245 l~~L~~~ln~~l~~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~~--~~~~~~~~~~i~ri~~~i~~ll~ 322 (485)
T PRK10815 245 LTSLVRNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMSV--EQAEPIMLEQISRISQQIGYYLH 322 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444555678999999999999999999999987643 232 23345577788899999999999
Q ss_pred hCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEE
Q 006508 428 NSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTV 507 (642)
Q Consensus 428 ~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I 507 (642)
.++.+.+...+..+.+++.++++++++.+...+..+++.+.++++++. .+.+|+..+.+++.||++||+||.+. .+
T Consensus 323 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~--~i 398 (485)
T PRK10815 323 RASMRSEHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE--FV 398 (485)
T ss_pred HHHhhcCCcccccceecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC--cE
Confidence 999988888888899999999999999999999999999999887654 47899999999999999999998754 45
Q ss_pred EEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHc
Q 006508 508 LFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLM 587 (642)
Q Consensus 508 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~ 587 (642)
.|++...++ ++.|+|.|+|+||+++..+++|++|++.... ..|+||||+|||++++.|
T Consensus 399 ~I~~~~~~~---------------------~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~-~~G~GLGL~Ivk~iv~~~ 456 (485)
T PRK10815 399 EISARQTDE---------------------HLHIVVEDDGPGIPESKRELIFDRGQRADTL-RPGQGLGLSVAREITEQY 456 (485)
T ss_pred EEEEEEeCC---------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCCC-CCCcchhHHHHHHHHHHc
Confidence 565554432 3889999999999999999999999876543 348999999999999999
Q ss_pred CCEEEEEecCCCCcEEEEEEEEec
Q 006508 588 QGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 588 gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
||+|+++|. +++||+|++.||.+
T Consensus 457 gG~i~v~s~-~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 457 EGKISAGDS-PLGGARMEVIFGRQ 479 (485)
T ss_pred CCEEEEEEC-CCCEEEEEEEEcCC
Confidence 999999999 58899999999976
No 23
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=2.1e-29 Score=268.02 Aligned_cols=212 Identities=11% Similarity=0.109 Sum_probs=177.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeH-HHHH
Q 006508 371 NAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRL-HAMI 449 (642)
Q Consensus 371 ~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L-~~li 449 (642)
..|.+.++||+||||++|.+.++++.+... + ..+.+.+..+++...+++++++++.+.........++++ ++++
T Consensus 138 ~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~~~i 212 (356)
T PRK10755 138 RLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLEDVI 212 (356)
T ss_pred HHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHHHHH
Confidence 468899999999999999999998864322 2 233455667888999999999999876666666678888 9999
Q ss_pred HHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccc
Q 006508 450 KEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWR 529 (642)
Q Consensus 450 ~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~ 529 (642)
..+...+...+..+++.+.++.++. +..+.+|+..+.+++.||++||+||+++++.|.|++...++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~------------ 279 (356)
T PRK10755 213 LPSQDELSEMLEQRQQTLLLPESAA-DITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQEDGG------------ 279 (356)
T ss_pred HHHHHHHHHHHHHhCCeEEeccCCC-ceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCE------------
Confidence 9999989998888988887743333 336899999999999999999999988888999988655432
Q ss_pred cccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCC-CcEEEEEEE
Q 006508 530 QSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHG-FAQSMGLVL 608 (642)
Q Consensus 530 ~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g-~Gt~f~i~L 608 (642)
+.++|+|+|+||+++..+++|++|++... ...|+|+||++|+++++.|||+|+++|. ++ .||+|++.+
T Consensus 280 ---------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~g~GlGL~i~~~i~~~~gg~i~i~s~-~~~~Gt~~~i~~ 348 (356)
T PRK10755 280 ---------AVLAVEDEGPGIDESKCGELSKAFVRMDS-RYGGIGLGLSIVSRITQLHHGQFFLQNR-QERSGTRAWVWL 348 (356)
T ss_pred ---------EEEEEEECCCCCCHHHHHHhCCCeEeCCC-CCCCcCHHHHHHHHHHHHCCCEEEEEEC-CCCCeEEEEEEe
Confidence 88999999999999999999999987543 3458999999999999999999999999 46 899999999
Q ss_pred Eec
Q 006508 609 RFQ 611 (642)
Q Consensus 609 P~~ 611 (642)
|..
T Consensus 349 p~~ 351 (356)
T PRK10755 349 PKA 351 (356)
T ss_pred cCC
Confidence 964
No 24
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.97 E-value=3.5e-29 Score=276.00 Aligned_cols=243 Identities=18% Similarity=0.226 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 347 ~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
+++.+..+.+.+..++.++..+.+.+|.+.++||+||||+.+.+.++.+++... +...+.++.+...++++.++++++.
T Consensus 217 dE~~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~ 295 (466)
T PRK10549 217 DELGRLAQDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLH 295 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666667778899999999999999999999999876432 2234567888889999999999999
Q ss_pred hhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcE
Q 006508 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++.+.+...+..+++++.+++++++..++.....+++.++++++++. .+.+|+..+.|++.||++||++|.+++|.
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~ 373 (466)
T PRK10549 296 QLSLSDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGS 373 (466)
T ss_pred HHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999999999999999999999999999999999889999998887653 57899999999999999999999888899
Q ss_pred EEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCC---CCCCCcchHHHHHHH
Q 006508 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGN---EGIEDRMSFSVCKKL 583 (642)
Q Consensus 507 I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~~G~GLGL~i~k~i 583 (642)
|.|.+...++. +.|.|.|+|+||+++.++++|++|++..+. ...|+||||++|+++
T Consensus 374 I~i~~~~~~~~---------------------~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i 432 (466)
T PRK10549 374 LHISAEQRDKT---------------------LRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNI 432 (466)
T ss_pred EEEEEEEcCCE---------------------EEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHH
Confidence 99998766432 889999999999999999999999986542 235899999999999
Q ss_pred HHHcCCEEEEEecCCCCcEEEEEEEEeccCC
Q 006508 584 VQLMQGNIWMVPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 584 v~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
++.|||+++++|. ++.||+|++.||+...+
T Consensus 433 ~~~~~G~l~~~s~-~~~G~~~~i~lP~~~~~ 462 (466)
T PRK10549 433 VEAHNGRIIAAHS-PFGGVSITVELPLERDL 462 (466)
T ss_pred HHHcCCEEEEEEC-CCCeEEEEEEccCCCCC
Confidence 9999999999999 58899999999987543
No 25
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=8.8e-29 Score=283.26 Aligned_cols=239 Identities=10% Similarity=0.123 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 347 ~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
+++.+..+.+.+...++++..+....|.+.++||+|||++.|.+.++.+.....+++..++++.+.+.++++..+++++.
T Consensus 462 DEIg~La~afn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~ 541 (703)
T TIGR03785 462 DEIGDLSRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMS 541 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666777777777889999999999999999999999998777777888899999999999999999999
Q ss_pred hhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcE
Q 006508 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++++.+....+.+++++.+++++++..++.....+++.+++ +.+.. .+.+|+..+.|++.||++||+||+++++.
T Consensus 542 ~~arle~~~~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i--~~~~~-~i~~d~~~L~~il~NLI~NAik~s~~~~~ 618 (703)
T TIGR03785 542 EATRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNI--PETPL-VMRGSPELIAQMLDKLVDNAREFSPEDGL 618 (703)
T ss_pred HHHhhhcccccccceeecHHHHHHHHHHHHHHHhhcCCEEEEe--cCCCe-EEEECHHHHHHHHHHHHHHHHHHCCCCCe
Confidence 9999988877788899999999999999999888777665554 33323 68999999999999999999999988899
Q ss_pred EEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC---CCCCCCcchHHHHHHH
Q 006508 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG---NEGIEDRMSFSVCKKL 583 (642)
Q Consensus 507 I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~G~GLGL~i~k~i 583 (642)
|.|++...++ .+.|+|+|+|+||+++..+++|++|++... ...+|+||||+|||++
T Consensus 619 I~I~~~~~~~---------------------~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~I 677 (703)
T TIGR03785 619 IEVGLSQNKS---------------------HALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRLI 677 (703)
T ss_pred EEEEEEEcCC---------------------EEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHHH
Confidence 9888876543 288999999999999999999999987542 2234899999999999
Q ss_pred HHHcCCEEEEEecCCCCcEEEEEEEE
Q 006508 584 VQLMQGNIWMVPSSHGFAQSMGLVLR 609 (642)
Q Consensus 584 v~~~gG~I~v~s~~~g~Gt~f~i~LP 609 (642)
++.|||+|++++.+.|.|++|+|+||
T Consensus 678 v~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 678 ADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred HHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 99999999999985348999999998
No 26
>PRK10337 sensor protein QseC; Provisional
Probab=99.96 E-value=4.1e-28 Score=266.32 Aligned_cols=234 Identities=12% Similarity=0.116 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 006508 348 KLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSD-QRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 348 ~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~-~~~~l~~i~~~~~~l~~li~~ll 426 (642)
++....+.+.+..++.++......+|.+.++||+|||++.+.+.++.+.....+++ ..++++.+...++++..++++++
T Consensus 215 Ei~~l~~~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll 294 (449)
T PRK10337 215 EVRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLL 294 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555679999999999999999999888765444443 45688999999999999999999
Q ss_pred hhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcE
Q 006508 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
.+++++.+......+++++.+++++++..+...+..+++.+.++.++..+ .+.+|+..+.+++.|+++||+||+++++.
T Consensus 295 ~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~l~~vl~Nli~NA~k~~~~~~~ 373 (449)
T PRK10337 295 TLSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAHPV-IRTGQPLLLSLLVRNLLDNAIRYSPQGSV 373 (449)
T ss_pred HHHhcCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCc-eeecCHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 99999887666677899999999999999999999999999998876534 57999999999999999999999888888
Q ss_pred EEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHH
Q 006508 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQL 586 (642)
Q Consensus 507 I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~ 586 (642)
|.|++.. ..++|.|+|+|||++..+++|++|++..+...+|+||||+||++++++
T Consensus 374 i~i~~~~-------------------------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~iv~~i~~~ 428 (449)
T PRK10337 374 VDVTLNA-------------------------RNFTVRDNGPGVTPEALARIGERFYRPPGQEATGSGLGLSIVRRIAKL 428 (449)
T ss_pred EEEEEEe-------------------------eEEEEEECCCCCCHHHHHHhcccccCCCCCCCCccchHHHHHHHHHHH
Confidence 8887642 248999999999999999999999986655556999999999999999
Q ss_pred cCCEEEEEecCCCCcEEEEEEE
Q 006508 587 MQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 587 ~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
|||+|+++|. ++.|++|++.+
T Consensus 429 ~gg~l~~~s~-~~~G~~~~i~~ 449 (449)
T PRK10337 429 HGMNVSFGNA-PEGGFEAKVSW 449 (449)
T ss_pred cCCEEEEEec-CCCeEEEEEeC
Confidence 9999999998 58899998864
No 27
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.96 E-value=9.8e-28 Score=254.25 Aligned_cols=219 Identities=14% Similarity=0.200 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHH
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~l 448 (642)
.+.+|++.++||+||||++|.++++++.+...+++.+++++.+.+.++++..++++++.+.+... ..+.+++.+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHHH
Confidence 45779999999999999999999999887656677789999999999999999999998766422 357899999
Q ss_pred HHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhccc-CCCcEEEEEEEEecCCCCcccccccc
Q 006508 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCN-SRRGTVLFRVVSENGSQDRNDKKWAT 527 (642)
Q Consensus 449 i~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~-~~~g~I~i~v~~~~~~~~~~~~~~~~ 527 (642)
++.+...+.... .+++.+.++.+++.| .+.+|+..+.||+.||++||++|. ++++.|.|++........
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~-------- 272 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTL-------- 272 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEcccccccc--------
Confidence 999888777555 356888888777777 699999999999999999999987 778888887643311000
Q ss_pred cccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEE
Q 006508 528 WRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
........+.++|.|+|+||+++..+++|++|++... .|+||||++||++++.|||+|+++|. +| ||+|++.
T Consensus 273 ---~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~---~g~GlGL~i~~~iv~~~gG~i~~~s~-~~-~~~f~i~ 344 (348)
T PRK11073 273 ---HGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE---GGTGLGLSIARNLIDQHSGKIEFTSW-PG-HTEFSVY 344 (348)
T ss_pred ---CCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC---CCccCCHHHHHHHHHHcCCeEEEEec-CC-ceEEEEE
Confidence 0001122467999999999999999999999987543 49999999999999999999999998 46 5999999
Q ss_pred EEec
Q 006508 608 LRFQ 611 (642)
Q Consensus 608 LP~~ 611 (642)
||+.
T Consensus 345 lP~~ 348 (348)
T PRK11073 345 LPIR 348 (348)
T ss_pred EecC
Confidence 9963
No 28
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=6.3e-28 Score=253.08 Aligned_cols=216 Identities=19% Similarity=0.272 Sum_probs=190.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHH
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDV--NLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLH 446 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~lL~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~ 446 (642)
.+.+|.+.++||+||||+.|.++++++... ..+++..++++.|.+.++++..++++++++++.+.+......+++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 445689999999999999999999988754 345556788999999999999999999999999888888888999999
Q ss_pred HHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCccccccc
Q 006508 447 AMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWA 526 (642)
Q Consensus 447 ~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~ 526 (642)
++++.+...+......+++.+.++.++ .+ .+.+|+..+.+++.||+.||++|.+.++.|.|++...++.
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~~-~~-~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~--------- 261 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEIDG-GV-DVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGGG--------- 261 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCCC-Cc-eEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcCCE---------
Confidence 999999999999999999999988743 34 7999999999999999999999988889999888765432
Q ss_pred ccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC---CCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEE
Q 006508 527 TWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG---NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQS 603 (642)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~ 603 (642)
+.|.|.|+|+||+++..+++|++|++... ....|+|+||++|+++++.|||+|+++|. +|.||+
T Consensus 262 ------------~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~-~~~Gt~ 328 (333)
T TIGR02966 262 ------------AEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESE-LGKGST 328 (333)
T ss_pred ------------EEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHHHHHHCCCEEEEEec-CCCCeE
Confidence 88999999999999999999999986432 23468999999999999999999999999 589999
Q ss_pred EEEEE
Q 006508 604 MGLVL 608 (642)
Q Consensus 604 f~i~L 608 (642)
|+++|
T Consensus 329 ~~i~l 333 (333)
T TIGR02966 329 FSFIF 333 (333)
T ss_pred EEEEC
Confidence 99975
No 29
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.96 E-value=9.2e-28 Score=263.79 Aligned_cols=236 Identities=18% Similarity=0.229 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDV 425 (642)
Q Consensus 347 ~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l 425 (642)
+++.+..+.+.+..+++.+..+...++.+.++||+||||+++.+.++.+.... ..++..++++.+.+..+++..+++++
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 297 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDM 297 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666666666778999999999999999999998876443 34455678888899999999999999
Q ss_pred HhhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCc
Q 006508 426 MDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG 505 (642)
Q Consensus 426 l~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g 505 (642)
+++++.+........+++++.++++++.+.+...+..+++.+.++ .+ ..+.+|+..+.+++.|+++||+||.++++
T Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~ 373 (457)
T TIGR01386 298 LFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVE--GE--GLVRGDPQMFRRAISNLLSNALRHTPDGG 373 (457)
T ss_pred HHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEec--CC--ceEEECHHHHHHHHHHHHHHHHHcCCCCc
Confidence 999999998888888999999999999999998888888776654 33 26899999999999999999999988888
Q ss_pred EEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC---CCCCCCcchHHHHHH
Q 006508 506 TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG---NEGIEDRMSFSVCKK 582 (642)
Q Consensus 506 ~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~G~GLGL~i~k~ 582 (642)
.|.|++...++. +.|+|.|+|.|||++...++|++|++... ....|+||||+|||+
T Consensus 374 ~I~i~~~~~~~~---------------------~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~ 432 (457)
T TIGR01386 374 TITVRIERRSDE---------------------VRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRS 432 (457)
T ss_pred eEEEEEEecCCE---------------------EEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHH
Confidence 999988765432 88999999999999999999999998543 234689999999999
Q ss_pred HHHHcCCEEEEEecCCCCcEEEEEEEE
Q 006508 583 LVQLMQGNIWMVPSSHGFAQSMGLVLR 609 (642)
Q Consensus 583 iv~~~gG~I~v~s~~~g~Gt~f~i~LP 609 (642)
+++.|||+|++++ + |+||+|+++||
T Consensus 433 ~~~~~~G~~~~~~-~-~~G~~~~~~~P 457 (457)
T TIGR01386 433 IMEAHGGRASAES-P-DGKTRFILRFP 457 (457)
T ss_pred HHHHCCCEEEEEe-C-CCceEEEEecC
Confidence 9999999999999 4 78999999998
No 30
>PRK09835 sensor kinase CusS; Provisional
Probab=99.96 E-value=3e-27 Score=261.79 Aligned_cols=238 Identities=11% Similarity=0.128 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 348 KLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 348 ~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
++....+.+.+..++.++..+.+.+|.+.++||||||++.+.+.++.+.+.. ...+..+.+..+.....++..++++++
T Consensus 240 El~~l~~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll 319 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDML 319 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555666778999999999999999999988876543 334456677788888899999999999
Q ss_pred hhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcE
Q 006508 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++.+.+......+++++.++++++.+.++.....+++.+.++. +.+ .+.+|+..+.+++.|+++||+||+++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~~d~~~l~~vl~nll~Na~~~~~~~~~ 396 (482)
T PRK09835 320 FLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVG--DPC-QVAGDPLMLRRAISNLLSNALRYTPAGEA 396 (482)
T ss_pred HHHHhcCCCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeC--CCc-EEEECHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 999999888888889999999999999999998888887777653 323 68999999999999999999999888888
Q ss_pred EEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC---CCCCCCcchHHHHHHH
Q 006508 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG---NEGIEDRMSFSVCKKL 583 (642)
Q Consensus 507 I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~G~GLGL~i~k~i 583 (642)
|.|++...++. +.++|.|+|+||+++..+++|++|++... ....|+||||+|||++
T Consensus 397 I~i~~~~~~~~---------------------~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i 455 (482)
T PRK09835 397 ITVRCQEVDHQ---------------------VQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSI 455 (482)
T ss_pred EEEEEEEeCCE---------------------EEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHHH
Confidence 98988765432 88999999999999999999999987543 2335899999999999
Q ss_pred HHHcCCEEEEEecCCCCcEEEEEEEEec
Q 006508 584 VQLMQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 584 v~~~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
++.|||+|+++|. +.|++|++.||..
T Consensus 456 ~~~~~g~i~~~s~--~~g~~~~i~lP~~ 481 (482)
T PRK09835 456 VVAHKGTVAVTSD--ARGTRFVISLPRL 481 (482)
T ss_pred HHHCCCEEEEEEC--CCcEEEEEEeeCC
Confidence 9999999999997 3599999999953
No 31
>PRK13557 histidine kinase; Provisional
Probab=99.96 E-value=8.5e-27 Score=261.62 Aligned_cols=256 Identities=13% Similarity=0.154 Sum_probs=195.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeee
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDV-----NLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSF 443 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~lL~~~-----~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~ 443 (642)
....++..++||+||||+.|.++++++.+. .......+.++.+.+.++++..++++++++++.. ......+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 456788999999999999999999988642 1234556789999999999999999999998743 3445689
Q ss_pred eHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccc
Q 006508 444 RLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDK 523 (642)
Q Consensus 444 ~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~ 523 (642)
++.++++.+...+... ..+++.+.++.++++| .+.+|+.++.|++.||+.||+||.+.++.+.|..........
T Consensus 238 ~l~~~i~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~---- 311 (540)
T PRK13557 238 NLNGLVSGMGELAERT-LGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDE---- 311 (540)
T ss_pred CHHHHHHHHHHHHHHh-cCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcc----
Confidence 9999999887776543 3466778777777766 689999999999999999999998888888887754321100
Q ss_pred cccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEE
Q 006508 524 KWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQS 603 (642)
Q Consensus 524 ~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~ 603 (642)
.+..+.. ...+.++.|+|.|||+||+++..+++|++|++... ...|+||||++||++++.|||+|+++|. +|+||+
T Consensus 312 ~~~~~~~--~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~-~~~g~GlGL~i~~~~v~~~gG~i~~~s~-~~~G~~ 387 (540)
T PRK13557 312 DLAMYHG--LPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE-EGKGTGLGLSMVYGFAKQSGGAVRIYSE-VGEGTT 387 (540)
T ss_pred ccccccC--CCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC-CCCCCCccHHHHHHHHHHCCCEEEEEec-CCCceE
Confidence 0001100 11234588999999999999999999999987654 3359999999999999999999999999 589999
Q ss_pred EEEEEEeccCCCCCCCCCCCCCCCCCcCCCCCccccccC
Q 006508 604 MGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 604 f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilivd 642 (642)
|+|+||....+..+.+. .+........+++|+|||
T Consensus 388 f~i~lP~~~~~~~~~~~----~~~~~~~~~~~~~iliv~ 422 (540)
T PRK13557 388 VRLYFPASDQAENPEQE----PKARAIDRGGTETILIVD 422 (540)
T ss_pred EEEEeeCCCCccCCCCC----CCCcccccCCCceEEEEc
Confidence 99999986544322111 111223345677899886
No 32
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=1e-26 Score=256.65 Aligned_cols=238 Identities=13% Similarity=0.167 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006508 348 KLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMD 427 (642)
Q Consensus 348 ~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 427 (642)
++.+..+.+++..++.++. +...++++.++||+|||++.+.+.++.+++....++.+++++.+...++++..+++++++
T Consensus 235 Ei~~l~~~~~~m~~~l~~~-~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 313 (475)
T PRK11100 235 ELRELAQALESMRVKLEGK-AYVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLE 313 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443322 234568899999999999999999999887555666788999999999999999999999
Q ss_pred hCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEE
Q 006508 428 NSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTV 507 (642)
Q Consensus 428 ~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I 507 (642)
+++++.........++++.++++++...+...+..+++.+.++.+ +..+.+|...+.+++.|+++||++|..+++.|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i 390 (475)
T PRK11100 314 LARLEQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTI 390 (475)
T ss_pred HHhcccCCCCccceeccHHHHHHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 999988877777899999999999999999999999999888766 23689999999999999999999998888999
Q ss_pred EEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC--CCCCCCcchHHHHHHHHH
Q 006508 508 LFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG--NEGIEDRMSFSVCKKLVQ 585 (642)
Q Consensus 508 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~--~~~~G~GLGL~i~k~iv~ 585 (642)
.|++...++. +.++|+|+|.||+++.++++|++|++... ....|+|+||++|+++++
T Consensus 391 ~i~~~~~~~~---------------------~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i~~~~~~ 449 (475)
T PRK11100 391 TLSAEVDGEQ---------------------VALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAFVREVAR 449 (475)
T ss_pred EEEEEEcCCE---------------------EEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHHHHHHHH
Confidence 9998765443 88999999999999999999999987532 234589999999999999
Q ss_pred HcCCEEEEEecCCCCcEEEEEEEEec
Q 006508 586 LMQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 586 ~~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
+|||+|+++|. ++.||+|++.+|..
T Consensus 450 ~~~G~i~i~s~-~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 450 LHGGEVTLRNR-PEGGVLATLTLPRH 474 (475)
T ss_pred HCCCEEEEEEc-CCCeEEEEEEeeCC
Confidence 99999999999 58899999999964
No 33
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.95 E-value=1e-26 Score=254.17 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 347 ~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
+++....+.+.+..++.++.++.+..|++.++||+||||+.|.+.++++.++ .....+.+.+..+++..++++++
T Consensus 206 ~Ei~~L~~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l 280 (435)
T PRK09467 206 SEVRSVTRAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFI 280 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666777778889999999999999999999888876432 23345678888999999999999
Q ss_pred hhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcE
Q 006508 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++.+.+ ....++++.+++++++.... ..+..+.++++.+.. .+.+|+..+.+++.||++||+||. ++.
T Consensus 281 ~~~r~~~~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~~~-~~~~~~~~l~~il~NLl~NA~k~~--~~~ 350 (435)
T PRK09467 281 DYLRTGQE---MPMEMADLNALLGEVIAAES----GYEREIETALQPGPI-EVPMNPIAIKRALANLVVNAARYG--NGW 350 (435)
T ss_pred HHhcccCC---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCCCc-eEEECHHHHHHHHHHHHHHHHHhC--CCe
Confidence 99987543 34578999999999877654 355567776665533 799999999999999999999974 577
Q ss_pred EEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCC-CCCCCcchHHHHHHHHH
Q 006508 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGN-EGIEDRMSFSVCKKLVQ 585 (642)
Q Consensus 507 I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~G~GLGL~i~k~iv~ 585 (642)
|.|++...++ .+.|+|.|+|+||+++..+++|++|++.... ...|+|+||+||+++++
T Consensus 351 i~i~~~~~~~---------------------~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~~~~g~GlGL~iv~~i~~ 409 (435)
T PRK09467 351 IKVSSGTEGK---------------------RAWFQVEDDGPGIPPEQLKHLFQPFTRGDSARGSSGTGLGLAIVKRIVD 409 (435)
T ss_pred EEEEEEecCC---------------------EEEEEEEecCCCcCHHHHHHhcCCcccCCCCCCCCCeehhHHHHHHHHH
Confidence 8888765533 2889999999999999999999999985432 34689999999999999
Q ss_pred HcCCEEEEEecCCCCcEEEEEEEEec
Q 006508 586 LMQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 586 ~~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
.|||++.+.+. +++|++|++++|+.
T Consensus 410 ~~~g~l~i~~~-~~~G~~~~i~lp~~ 434 (435)
T PRK09467 410 QHNGKVELGNS-EEGGLSARAWLPLT 434 (435)
T ss_pred HCCCEEEEEEC-CCCcEEEEEEEeCC
Confidence 99999999998 58899999999975
No 34
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.95 E-value=1.8e-26 Score=254.07 Aligned_cols=237 Identities=12% Similarity=0.117 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 347 ~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
+++.+..+.+.+..+++.+....+.+|.+.+|||+||||+.+.+..+++....... ..+..+.+..+++..++++++
T Consensus 220 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~ 296 (461)
T PRK09470 220 QEFRQAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLL 296 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666777778999999999999999999988876543222 246678889999999999999
Q ss_pred hhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcE
Q 006508 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++.+.. .....+.+++.++++++++.+......+++.++++..++ +..+.+|+..+.+++.|+++||+||.+ +.
T Consensus 297 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~--~~ 372 (461)
T PRK09470 297 VLSRNQQK-NHLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH--TK 372 (461)
T ss_pred HHHHhhcc-cccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC--Cc
Confidence 99997654 356778999999999999998888888888888874444 337899999999999999999999764 45
Q ss_pred EEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCC---CCCCCCcchHHHHHHH
Q 006508 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIG---NEGIEDRMSFSVCKKL 583 (642)
Q Consensus 507 I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~G~GLGL~i~k~i 583 (642)
|.|++...++. +.|+|+|+|+||+++.++++|++|++... ....|+||||++|+++
T Consensus 373 i~i~~~~~~~~---------------------~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~ 431 (461)
T PRK09470 373 IEVAFSVDKDG---------------------LTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENA 431 (461)
T ss_pred EEEEEEEECCE---------------------EEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHH
Confidence 77777655432 88999999999999999999999987543 2345899999999999
Q ss_pred HHHcCCEEEEEecCCCCcEEEEEEEEecc
Q 006508 584 VQLMQGNIWMVPSSHGFAQSMGLVLRFQL 612 (642)
Q Consensus 584 v~~~gG~I~v~s~~~g~Gt~f~i~LP~~~ 612 (642)
++.|||+++++|. ++.||+|++.+|+..
T Consensus 432 v~~~~G~l~~~s~-~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 432 IQQHRGWVKAEDS-PLGGLRLTIWLPLYK 459 (461)
T ss_pred HHHCCCEEEEEEC-CCCeEEEEEEeeCCC
Confidence 9999999999999 578999999999853
No 35
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.95 E-value=3.2e-26 Score=259.99 Aligned_cols=215 Identities=17% Similarity=0.277 Sum_probs=189.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHH
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~l 448 (642)
...++++.++||+||||+.|.++++++.....+++..++++.+.+..+++..++++++++++.... ..+++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 456789999999999999999999998776667777899999999999999999999999986543 3568999999
Q ss_pred HHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCccccccccc
Q 006508 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATW 528 (642)
Q Consensus 449 i~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~ 528 (642)
++++...+......+++.+.++++++++ .+.+|+..+.+++.|++.||++|...+|.|.|++...++.
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~----------- 532 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSDG----------- 532 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCC-----------
Confidence 9999999988877888999998887777 6899999999999999999999877788998888655321
Q ss_pred ccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEE
Q 006508 529 RQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 529 ~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
.+.++|+|||+||+++..+++|++|++... .|+|+||++||+++++|||+|+++|. +|+||+|+|+|
T Consensus 533 ---------~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~---~g~glGL~~~~~~~~~~~G~i~~~s~-~~~Gt~~~i~l 599 (607)
T PRK11360 533 ---------QVAVSIEDNGCGIDPELLKKIFDPFFTTKA---KGTGLGLALSQRIINAHGGDIEVESE-PGVGTTFTLYL 599 (607)
T ss_pred ---------EEEEEEEeCCCCCCHHHHhhhcCCceeCCC---CCCchhHHHHHHHHHHcCCEEEEEEc-CCCceEEEEEe
Confidence 188999999999999999999999987543 48999999999999999999999999 58999999999
Q ss_pred Eecc
Q 006508 609 RFQL 612 (642)
Q Consensus 609 P~~~ 612 (642)
|...
T Consensus 600 p~~~ 603 (607)
T PRK11360 600 PINP 603 (607)
T ss_pred cCCC
Confidence 9853
No 36
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.95 E-value=9.3e-30 Score=291.32 Aligned_cols=620 Identities=38% Similarity=0.471 Sum_probs=486.8
Q ss_pred CCCCCCccccCCCCC-CCChhhHHHHHHhhhHHHHHHHhhHhHHHHHHHhcCCCC--chHHHHHHHHHHHHHhhHHHHHH
Q 006508 23 GDNNFPRCNCDDDAS-SWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNVP--FKWVLIQFIAFIVLCGLTHLLNG 99 (642)
Q Consensus 23 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sd~lia~a~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~ 99 (642)
.++.+.+|||++... .|.....+..++.+|++++.|||++|.+++||..+...+ +.|....+++|+..|+.+|.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 104 (786)
T KOG0519|consen 25 DDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEAGVLSEFIAFDNLCGATHLLNG 104 (786)
T ss_pred CCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhcccccccccccceeccccchhhhhhhhhhcccchh
Confidence 446799999987643 344456678899999999999999999999999887543 89999999999999999999999
Q ss_pred Hh-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHH---HHHHhHHHHHHHHHHHHhHHHHHH
Q 006508 100 WT-YGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKK---AWDLGREVGIIMKQKEAGVHVRML 175 (642)
Q Consensus 100 ~~-~~~~~~~~~~~~~~~~~~ta~v~~~~ai~l~~lip~~l~~~~~e~~l~~~---~~~l~~e~~~~~~~~~~~~~l~~l 175 (642)
|+ +.++..+++.+.+..+.+++.+++.++......+|..+..+.++...+++ +.++.++...+....+...+.+++
T Consensus 105 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~s~~~~~~~~~~ 184 (786)
T KOG0519|consen 105 WTSYTSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAELDYEVGLINTSLETLSIVRML 184 (786)
T ss_pred hhcCCccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchhhhhhhhhhhhhhheeeeeeee
Confidence 99 58888888888899999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCC--CCCCCceecCChhHHHHhhcCCceE
Q 006508 176 TQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNY--SDMCSSIPITDQDVVRIKGSDGVNI 253 (642)
Q Consensus 176 t~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (642)
++.++.+.+++.+++.+...+.+.+..+.++.|.+.+........|++..... .......+..+.+...++.......
T Consensus 185 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 264 (786)
T KOG0519|consen 185 THEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNGGMLGGLSDTDLDSDQRLILNTDRVSA 264 (786)
T ss_pred eeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeecccccCcceEEeccccchHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999987655666677654411 0011223334556666665555544
Q ss_pred eCCCchhhhhccCCc--ccCCceeEEEeeeeecccccCC-cchhhhcceeeEEEEeeCCCCCCCChHHHHHHHHHHHHHH
Q 006508 254 LGPDSELAAASSGES--VESGPVAAIRMPMLRVSNFKGG-TPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVL 330 (642)
Q Consensus 254 l~~~~~l~~~~~~~~--~~~g~~~~i~~Pl~~~~~~~g~-~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~~a~qva 330 (642)
....+.+........ ...+...+.++|+....++.+. +++.....|++.++.+....++.|..++.++-+.++++++
T Consensus 265 ~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~ 344 (786)
T KOG0519|consen 265 KSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVS 344 (786)
T ss_pred cccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhcc
Confidence 444444433222222 2345667788888888887765 7888999999999999998899999999999999999999
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-HhccCCCHHHHHH
Q 006508 331 VALS--HAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSI-MQDVNLNSDQRMI 407 (642)
Q Consensus 331 ~al~--~a~l~~e~~~~~~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~l-L~~~~~~~~~~~~ 407 (642)
.++. ++.-.++...+++++..++..++.++++..++..++..++..+.|.+|+|.+.+.+.... +++..+.+++.-.
T Consensus 345 naik~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~ 424 (786)
T KOG0519|consen 345 NAIKFTHAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLE 424 (786)
T ss_pred ceecccccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCcee
Confidence 9998 777788888888899999999999999999999999999999999999999999998884 4555666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHH
Q 006508 408 VETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVF 487 (642)
Q Consensus 408 l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~ 487 (642)
++...+..+.+..+++.-.+.++...|........+.+..++....+..++....+...+...+..+.|..+.+|+.+..
T Consensus 425 i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 504 (786)
T KOG0519|consen 425 IQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLF 504 (786)
T ss_pred EehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhh
Confidence 88888988899999999999999877777778889999999999999999999888889999888888888999999999
Q ss_pred HHHHHHHHHhhc--ccCCCcEEEEEEEEe--cCCCCcc-cccccccccccCCCceEEEEEEEECCCCCCchhhhhccccc
Q 006508 488 QVILHMVGSLLN--CNSRRGTVLFRVVSE--NGSQDRN-DKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLG 562 (642)
Q Consensus 488 qvl~NLl~NAik--~~~~~g~I~i~v~~~--~~~~~~~-~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f 562 (642)
|++.+..+++.+ ++..+....+.+... +..-+.. ...+..|....+..+-.+.+.++++..++...+....+..+
T Consensus 505 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 584 (786)
T KOG0519|consen 505 QIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLH 584 (786)
T ss_pred hhhhhhcchhhhhhccccCcceeEEEEecccCccccccccchhhhhhcccccccchheEEeeeccccccCCCcchhhhhh
Confidence 999999999987 566666545555444 2221111 23344555555555557888899999998887777766655
Q ss_pred cccCCCC---CCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEeccCCCCCC------CCCCCCCCCCCcCCC
Q 006508 563 IRRIGNE---GIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXX------XXXXLLYPYLNLENL 633 (642)
Q Consensus 563 ~~~~~~~---~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~~~~~------~~~~~~~~~~~~~~~ 633 (642)
.+..... ..+.+++++.|++..+.++|.+++.....+..-.....+-......... ..+........-..+
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l 664 (786)
T KOG0519|consen 585 KSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLL 664 (786)
T ss_pred hccccchhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCCcccccCccccccc
Confidence 4433321 2467899999999999999999998542333222222222222222111 111111112244578
Q ss_pred CCccccccC
Q 006508 634 RSTHIPILS 642 (642)
Q Consensus 634 ~~~~ilivd 642 (642)
+|.+||+||
T Consensus 665 ~g~~iLlvd 673 (786)
T KOG0519|consen 665 TGPKILLVD 673 (786)
T ss_pred cCCceEEEe
Confidence 899999997
No 37
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.95 E-value=2.8e-23 Score=217.90 Aligned_cols=209 Identities=12% Similarity=0.142 Sum_probs=169.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhc---cCCCH---HHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeee
Q 006508 371 NAFQKVMSNGMRRPMHSILGLLSIMQD---VNLNS---DQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFR 444 (642)
Q Consensus 371 ~~~l~~isHeLrtPL~~I~g~~~lL~~---~~~~~---~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~ 444 (642)
++-..-++||+||||+.|...++-++. ...++ ..++..++|.+..+.+.+|+++...|+|.- ++++++.|
T Consensus 487 ~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP----~p~~e~~d 562 (712)
T COG5000 487 GDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP----APKLEKSD 562 (712)
T ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCcch
Confidence 345677999999999999999888764 22333 336789999999999999999999999964 35567999
Q ss_pred HHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccC-------CCcEEEEEEEEecCC
Q 006508 445 LHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNS-------RRGTVLFRVVSENGS 517 (642)
Q Consensus 445 L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~-------~~g~I~i~v~~~~~~ 517 (642)
|+++++++....+. ....+.+..++..+ |-....|+..+.|++.|++.||.++-. +.+.|+++....++
T Consensus 563 L~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g- 638 (712)
T COG5000 563 LRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADG- 638 (712)
T ss_pred HHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCC-
Confidence 99999999877653 33567788888777 756778999999999999999998622 22334343333222
Q ss_pred CCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecC
Q 006508 518 QDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSS 597 (642)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~ 597 (642)
.+++.|.|||.|+|.+.+.++|+|+.++.. .||||||+|+|+|+|.|||+|.+.+.|
T Consensus 639 --------------------~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~---KGTGLGLAiVKkIvEeHGG~leL~da~ 695 (712)
T COG5000 639 --------------------RIVVDVIDNGKGFPRENRHRALEPYVTTRE---KGTGLGLAIVKKIVEEHGGRLELHNAP 695 (712)
T ss_pred --------------------eEEEEEecCCCCCChHHhhhhccCceeccc---ccccccHHHHHHHHHhcCCeEEecCCC
Confidence 389999999999999999999999977654 399999999999999999999999986
Q ss_pred CCCcEEEEEEEEe
Q 006508 598 HGFAQSMGLVLRF 610 (642)
Q Consensus 598 ~g~Gt~f~i~LP~ 610 (642)
+-.|+.+.+.||.
T Consensus 696 d~~GA~i~i~fp~ 708 (712)
T COG5000 696 DFDGAMIRIKFPL 708 (712)
T ss_pred CCCCcEEEEEccc
Confidence 4559999999997
No 38
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-24 Score=225.97 Aligned_cols=219 Identities=20% Similarity=0.328 Sum_probs=186.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCC-ccceeeeeeHHH
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGR-FPLEIRSFRLHA 447 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~-~~l~~~~~~L~~ 447 (642)
.+..|.+.++||+|||++.+.+..+.+... ....+++.++.+....+++..++++++++++.+.+. ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 467899999999999999999988866544 222267888888899999999999999999987763 344467888999
Q ss_pred HHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccc
Q 006508 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWAT 527 (642)
Q Consensus 448 li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~ 527 (642)
+++++...+......+++.+....+ . +..+.+|+.++.+++.||+.||++|.+ ++.|.|.+...++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~~~----------- 258 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP-E-LPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQDDE----------- 258 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC-C-CceEeeCHHHHHHHHHHHHHHHhccCC-CCeEEEEEEecCC-----------
Confidence 9999999999988888888886654 2 226899999999999999999999888 8999999876643
Q ss_pred cccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEE
Q 006508 528 WRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
++.++|.|+|+||+++..+++|++|++...... |+|+||++||++++.|||++++++. +|.||+|+++
T Consensus 259 ----------~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~-g~GlGL~i~~~~~~~~~g~i~~~~~-~~~Gt~~~i~ 326 (336)
T COG0642 259 ----------QVTISVEDTGPGIPEEELERIFEPFFRTDKSRS-GTGLGLAIVKRIVELHGGTISVESE-PGKGTTFTIR 326 (336)
T ss_pred ----------eEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC-CCCccHHHHHHHHHHcCCEEEEEec-CCCceEEEEE
Confidence 489999999999999999999999998766443 8999999999999999999999999 4889999999
Q ss_pred EEeccCC
Q 006508 608 LRFQLRP 614 (642)
Q Consensus 608 LP~~~~~ 614 (642)
+|.....
T Consensus 327 lP~~~~~ 333 (336)
T COG0642 327 LPLAPAA 333 (336)
T ss_pred Eeccccc
Confidence 9987543
No 39
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.93 E-value=1.1e-21 Score=221.74 Aligned_cols=344 Identities=11% Similarity=0.107 Sum_probs=230.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCe--eEEEEEecCCCCCCCCCceec
Q 006508 160 GIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTE--MNLTHQLNGRNYSDMCSSIPI 237 (642)
Q Consensus 160 ~~~~~~~~~~~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~--l~~~~~~~~~~~~~~~~~~~~ 237 (642)
..+.++.+.+..||..++.+..+.+..+.++.+++.+.+.++++.+.+-+.+.+... ..+... .. ...
T Consensus 210 ~~l~~~~~~l~~ly~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~--------~~~ 279 (569)
T PRK10600 210 AGLEQKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYETDDEENHQEFTCQ--SD--------MTC 279 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhcCCCceEEEEeccccccceeeccCC--Cc--------cCc
Confidence 345666777778999999999999999999999999999999998887665433221 111110 00 000
Q ss_pred CChhHHHHhhcCCceEeCCCchhhhhccCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChH
Q 006508 238 TDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQ 317 (642)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~ 317 (642)
.+..... +... .. ........+..|+......+| ++.........++++
T Consensus 280 ~~~~~~~--------~~~~-------~~---~~~~~~~~~~~~l~~~~~~~G-------------~~~~~~~~~~~l~~~ 328 (569)
T PRK10600 280 DDKGCQL--------CPRG-------VL---PVGDRGTTLKWRLSDKHGQYG-------------ILLATLPQGRHLSHD 328 (569)
T ss_pred ccccccc--------cccc-------CC---CcCCCCceEEEEeecCCcceE-------------EEEEEcCCCCCCCHH
Confidence 0000000 0000 00 001113567889887766666 555555556789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Q 006508 318 ELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQD 397 (642)
Q Consensus 318 e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~ 397 (642)
+.++++.++.+++.+++..+..++. +++.. .+.+..+...+.|.+..+|+.+...++.++.
T Consensus 329 ~~~ll~~l~~~l~~~l~~~~~~~~~-----------~~~~~--------~~er~~iarelhd~i~~~L~~l~~~~~~l~~ 389 (569)
T PRK10600 329 QQQLVDTLVEQLTATLALERQQERQ-----------QQLIV--------MEERATIARELHDSIAQSLSCMKMQVSCLQM 389 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH--------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887554321110 11110 0112223333344445556666655555543
Q ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCC
Q 006508 398 --VNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSL 475 (642)
Q Consensus 398 --~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~l 475 (642)
...+++.++.++.|.+..+++...+++++...+. ...+.++.+.+++++..+.... ++.+.++.+.+.
T Consensus 390 ~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~~~~~~l~~~l~~~~~~~~~~~---~~~i~~~~~~~~ 459 (569)
T PRK10600 390 QGDALPESSRELLSQIRNELNASWRQLRELLTTFRL-------QLTEPGLRPALEASCEEFSARF---GFPVKLDYQLPP 459 (569)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------CcccCCHHHHHHHHHHHHHHHh---CCeEEEEecCCc
Confidence 3345677889999999999999999999987764 2346788899998888776554 344444443221
Q ss_pred CCeEE-ecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchh
Q 006508 476 PDHVM-GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEV 554 (642)
Q Consensus 476 p~~v~-~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~ 554 (642)
+ .+. .++..+.+++.|++.||+||. +.+.|.|++...++ .+.++|.|+|+||+++.
T Consensus 460 ~-~~~~~~~~~l~~il~ell~NA~kha-~a~~i~V~~~~~~~---------------------~~~l~V~D~G~Gi~~~~ 516 (569)
T PRK10600 460 R-LVPSHQAIHLLQIAREALSNALKHA-QASEVVVTVAQNQN---------------------QVKLSVQDNGCGVPENA 516 (569)
T ss_pred c-cCCHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEEEEcCC---------------------EEEEEEEECCCCCCccc
Confidence 1 222 344569999999999999975 45778888765433 38899999999998863
Q ss_pred hhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEecc
Q 006508 555 STSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQL 612 (642)
Q Consensus 555 ~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~ 612 (642)
. .++|+||+|||++++.|||+|+++|. +|+||+|+++||...
T Consensus 517 ~---------------~~~glGL~i~~~~~~~lgG~l~i~s~-~~~Gt~v~i~lp~~~ 558 (569)
T PRK10600 517 E---------------RSNHYGLIIMRDRAQSLRGDCRVRRR-ESGGTEVVVTFIPEK 558 (569)
T ss_pred c---------------CCCCccHHHHHHHHHHcCCEEEEEEC-CCCCEEEEEEEecCC
Confidence 1 26799999999999999999999999 588999999999853
No 40
>PRK13560 hypothetical protein; Provisional
Probab=99.93 E-value=1.5e-24 Score=255.31 Aligned_cols=210 Identities=8% Similarity=0.087 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCc
Q 006508 357 QQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRF 436 (642)
Q Consensus 357 ~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~ 436 (642)
++++++++++.+.++.|++.||||+||||++|.|+++++.+...+++...++..+......+....+.+...
T Consensus 592 K~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 663 (807)
T PRK13560 592 KHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS-------- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 344455556677889999999999999999999999998776666777777766666655655555555332
Q ss_pred cceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCC---CcEEEEEEEE
Q 006508 437 PLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSR---RGTVLFRVVS 513 (642)
Q Consensus 437 ~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~---~g~I~i~v~~ 513 (642)
....++++.++++++...+......+...+.+.++.+.+.....+...+.||+.||++||+||+.+ .|.|+|++..
T Consensus 664 -~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~ 742 (807)
T PRK13560 664 -EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIRE 742 (807)
T ss_pred -ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEE
Confidence 234579999999999999888777666666666655444234455667889999999999998643 3677777765
Q ss_pred ecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEE
Q 006508 514 ENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWM 593 (642)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v 593 (642)
.+ +.++.|+|+|||+|||++... ..|+||||+|||+||+.|||+|++
T Consensus 743 ~~--------------------~~~v~i~V~D~G~GI~~~~~~-------------~~~~gLGLai~~~iv~~~gG~I~v 789 (807)
T PRK13560 743 QG--------------------DGMVNLCVADDGIGLPAGFDF-------------RAAETLGLQLVCALVKQLDGEIAL 789 (807)
T ss_pred cC--------------------CCEEEEEEEeCCCcCCccccc-------------cccCCccHHHHHHHHHHcCCEEEE
Confidence 42 224899999999999987421 127789999999999999999999
Q ss_pred EecCCCCcEEEEEEEEec
Q 006508 594 VPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 594 ~s~~~g~Gt~f~i~LP~~ 611 (642)
+|. +||+|+|+||+.
T Consensus 790 ~S~---~Gt~F~i~lP~~ 804 (807)
T PRK13560 790 DSR---GGARFNIRFPMS 804 (807)
T ss_pred EcC---CceEEEEEecCC
Confidence 985 499999999974
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.92 E-value=5.4e-23 Score=226.77 Aligned_cols=248 Identities=10% Similarity=0.137 Sum_probs=176.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 006508 314 WSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDA-LMASQARNAFQKVMSNGMRRPMHSILGLL 392 (642)
Q Consensus 314 ~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~a~~~~-~~~~~~~~~~l~~isHeLrtPL~~I~g~~ 392 (642)
|..+..+++-.++.++...+--+...++.++.+++++++.++.++..++. +..++.++++.+.++||++|||++|.+.+
T Consensus 245 ~~~~~~~l~~~l~~~~l~gi~lg~~i~r~r~l~~~L~~~l~~~~~l~~~L~~~~e~~r~~ia~elhdeI~~pLtaI~~~a 324 (495)
T PRK11644 245 WHDHPVDLLLSLLAQSLTGLLLGAGIQRQRELNQSLQKELARNRHLAERLLETEESVRRDVARELHDEIGQTITAIRTQA 324 (495)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 44444555656666655544333334444444444443322222222222 22345677899999999999999999999
Q ss_pred HHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEe
Q 006508 393 SIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEV 471 (642)
Q Consensus 393 ~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~ 471 (642)
+++++.. .+++.++..+.|.+.+.++.+.++++++..+. ...+++++.+.++++++.+.... +++.++++.
T Consensus 325 ~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L~~~l~~l~~~l~~~~--~~~~v~l~~ 396 (495)
T PRK11644 325 GIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTLEQAIRSLMREMELED--RGIVSHLDW 396 (495)
T ss_pred HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCHHHHHHHHHHHHHHhh--cCceEEEEe
Confidence 9887643 33445678889999999999999999876552 23457899999999988876544 444455444
Q ss_pred CCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCC
Q 006508 472 DRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQ 551 (642)
Q Consensus 472 ~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~ 551 (642)
+.+.+.....|+..+.|++.|+++||+||. +.+.|.|++..+++ .+.++|+|||+||+
T Consensus 397 ~~~~~~l~~~~~~~L~ril~nlL~NAiKha-~~~~I~I~l~~~~~---------------------~i~l~V~DnG~Gi~ 454 (495)
T PRK11644 397 RIDESALSETQRVTLFRVCQEGLNNIVKHA-DASAVTLQGWQQDE---------------------RLMLVIEDDGSGLP 454 (495)
T ss_pred cCCcccCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEEEEEcCC---------------------EEEEEEEECCCCCC
Confidence 332222566778889999999999999975 45788888876543 28899999999998
Q ss_pred chhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEe
Q 006508 552 PEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRF 610 (642)
Q Consensus 552 ~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~ 610 (642)
++. .|+|+||++||++++.|||+|+++| ++||+|++++|.
T Consensus 455 ~~~----------------~~~GLGL~ivr~iv~~~GG~i~v~S---~~Gt~f~I~LP~ 494 (495)
T PRK11644 455 PGS----------------GQQGFGLRGMRERVTALGGTLTISC---THGTRLSVSLPQ 494 (495)
T ss_pred cCC----------------CCCCCcHHHHHHHHHHcCCEEEEEc---CCCEEEEEEEeC
Confidence 762 2689999999999999999999998 459999999995
No 42
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.91 E-value=1.6e-22 Score=204.51 Aligned_cols=213 Identities=13% Similarity=0.176 Sum_probs=176.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHH
Q 006508 370 RNAFQKVMSNGMRRPMHSILGLLSIMQ---DVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLH 446 (642)
Q Consensus 370 ~~~~l~~isHeLrtPL~~I~g~~~lL~---~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~ 446 (642)
.++-+.+++||++.||+++..|+-..+ ++..++..+.+++.|..-.+|+..+|+.+..|+|..+++-++ .|++|+
T Consensus 451 VGqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~ 528 (673)
T COG4192 451 VGQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLN 528 (673)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHH
Confidence 355677899999999999998875543 344566668999999999999999999999999987776554 499999
Q ss_pred HHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCC-cEEEEEEEEecCCCCcccccc
Q 006508 447 AMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR-GTVLFRVVSENGSQDRNDKKW 525 (642)
Q Consensus 447 ~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~-g~I~i~v~~~~~~~~~~~~~~ 525 (642)
++++.+.+.+....+.+.+.+.. |.+.| +|+||+..++||+.|++-||+++.+.. ..|.+.+...+
T Consensus 529 ~~v~~AweLl~~khk~rQ~~Li~--ptD~~-~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~---------- 595 (673)
T COG4192 529 SVVEQAWELLQTKHKRRQIKLIN--PTDDL-MVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTE---------- 595 (673)
T ss_pred HHHHHHHHHHHhhhhhccccccC--Ccccc-eecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecCc----------
Confidence 99999999999888888666553 55667 899999999999999999999975544 44555443322
Q ss_pred cccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEE
Q 006508 526 ATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMG 605 (642)
Q Consensus 526 ~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~ 605 (642)
....++.|.|||+|-|-+..+++|.||++++. -|.||||+||..+++.|.|++.+.|+ .-+|+.+.
T Consensus 596 ----------~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~---vgLGlGLSIsqSlmeqmqG~l~lASt-Lt~nA~Vi 661 (673)
T COG4192 596 ----------QEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE---VGLGLGLSISQSLMEQMQGRLALAST-LTKNAMVI 661 (673)
T ss_pred ----------ccceEEEEecCCCCCchhHHHHhcCCcccccc---cccccchhHHHHHHHHhcCcchHhhh-cccCcEEE
Confidence 12388999999999999999999999987544 59999999999999999999999999 78898877
Q ss_pred EEEEec
Q 006508 606 LVLRFQ 611 (642)
Q Consensus 606 i~LP~~ 611 (642)
+.+...
T Consensus 662 L~f~v~ 667 (673)
T COG4192 662 LEFQVD 667 (673)
T ss_pred EEEeec
Confidence 776554
No 43
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.90 E-value=1.2e-22 Score=228.31 Aligned_cols=195 Identities=15% Similarity=0.208 Sum_probs=137.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHH
Q 006508 372 AFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKE 451 (642)
Q Consensus 372 ~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~ 451 (642)
++++.++||+||||++|.|++++... ++..+++.. .+++....++++++..+. + ++..
T Consensus 341 ~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~----------~-----~~~~ 398 (542)
T PRK11086 341 DALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILK---TANNYQEEIGSLLGKIKS----------P-----VIAG 398 (542)
T ss_pred HHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHH---HHHHHHHHHHHHHHhccC----------H-----HHHH
Confidence 34566899999999999999886432 222233322 222222333333332210 1 1122
Q ss_pred HHHHHHHHHhhcCceEEEEeCCCCCCeE-EecHHHHHHHHHHHHHHhhcccC--CCcEEEEEEEEecCCCCccccccccc
Q 006508 452 AACLARCLSIYRGFGFSIEVDRSLPDHV-MGDERRVFQVILHMVGSLLNCNS--RRGTVLFRVVSENGSQDRNDKKWATW 528 (642)
Q Consensus 452 ~~~~~~~~~~~~~i~~~~~~~~~lp~~v-~~D~~~l~qvl~NLl~NAik~~~--~~g~I~i~v~~~~~~~~~~~~~~~~~ 528 (642)
.+......+..+++.+.++.+..+|... ..+...+.||+.||++||+||.. +++.|.|++...++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~------------ 466 (542)
T PRK11086 399 FLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRNG------------ 466 (542)
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCC------------
Confidence 2222234456678888887766655221 22345799999999999999853 46778888765543
Q ss_pred ccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEE
Q 006508 529 RQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 529 ~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
.+.|+|+|+|+||+++..+++|++|++++. .|+|+||++||++++.|||+|+++|. +|+||+|+|+|
T Consensus 467 ---------~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~---~g~GlGL~iv~~iv~~~~G~i~v~s~-~~~G~~f~i~l 533 (542)
T PRK11086 467 ---------WLHCEVSDDGPGIAPDEIDAIFDKGYSTKG---SNRGVGLYLVKQSVENLGGSIAVESE-PGVGTQFFVQI 533 (542)
T ss_pred ---------EEEEEEEECCCCCCHHHHHHHHhCCCccCC---CCCcCcHHHHHHHHHHcCCEEEEEeC-CCCcEEEEEEE
Confidence 388999999999999999999999986543 49999999999999999999999999 58999999999
Q ss_pred EeccC
Q 006508 609 RFQLR 613 (642)
Q Consensus 609 P~~~~ 613 (642)
|....
T Consensus 534 P~~~~ 538 (542)
T PRK11086 534 PWDGE 538 (542)
T ss_pred eCCCC
Confidence 98643
No 44
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.90 E-value=4.5e-22 Score=223.98 Aligned_cols=193 Identities=12% Similarity=0.105 Sum_probs=146.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHHHH
Q 006508 374 QKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAA 453 (642)
Q Consensus 374 l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~~~ 453 (642)
+..++||++|||++|.|+.++- +..+.++.+.+.+.++..+++.+...... ..+...+
T Consensus 342 l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~~--------------~~~~~~l- 399 (545)
T PRK15053 342 LRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFAD--------------RQVAGLL- 399 (545)
T ss_pred HHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhccc--------------HHHHHHH-
Confidence 4457999999999999987652 23456777888888888888888764321 1111111
Q ss_pred HHHHHHHhhcCceEEEEeCCC---CCCeEEecHHHHHHHHHHHHHHhhccc---CC-CcEEEEEEEEecCCCCccccccc
Q 006508 454 CLARCLSIYRGFGFSIEVDRS---LPDHVMGDERRVFQVILHMVGSLLNCN---SR-RGTVLFRVVSENGSQDRNDKKWA 526 (642)
Q Consensus 454 ~~~~~~~~~~~i~~~~~~~~~---lp~~v~~D~~~l~qvl~NLl~NAik~~---~~-~g~I~i~v~~~~~~~~~~~~~~~ 526 (642)
......+.++++.+.+..+.+ +| ...|+..+.|++.||++||++|. ++ ++.|.|.+...++
T Consensus 400 ~~~~~~~~~~~i~~~~~~~~~~~~l~--~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~---------- 467 (545)
T PRK15053 400 FGKVQRARELGLKMVIVPGSQLSQLP--PGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGD---------- 467 (545)
T ss_pred HHHHHHHHHhCCceEEcCCCcccccc--ccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCC----------
Confidence 112334556777777654433 33 46799999999999999999983 33 3677777765432
Q ss_pred ccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEE
Q 006508 527 TWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGL 606 (642)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i 606 (642)
.+.++|+|||+|||++..+++|++|++++....+|+|+||++||++++.|||+|+++|. +|.||+|++
T Consensus 468 -----------~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~~~g~GlGL~ivk~iv~~~~G~i~v~s~-~~~Gt~f~i 535 (545)
T PRK15053 468 -----------DVVIEVADQGCGVPESLRDKIFEQGVSTRADEPGEHGIGLYLIASYVTRCGGVITLEDN-DPCGTLFSI 535 (545)
T ss_pred -----------EEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCCCCCceeCHHHHHHHHHHcCCEEEEEEC-CCCeEEEEE
Confidence 38899999999999999999999999876655458999999999999999999999999 599999999
Q ss_pred EEEecc
Q 006508 607 VLRFQL 612 (642)
Q Consensus 607 ~LP~~~ 612 (642)
.||...
T Consensus 536 ~lP~~~ 541 (545)
T PRK15053 536 FIPKVK 541 (545)
T ss_pred EECCCC
Confidence 999753
No 45
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-19 Score=191.08 Aligned_cols=198 Identities=14% Similarity=0.179 Sum_probs=150.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHH
Q 006508 371 NAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIK 450 (642)
Q Consensus 371 ~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~ 450 (642)
.+-+...+||..|-|++|.|++++= +..+..+.|.+.++.-.+.++.+..--+ +..+.
T Consensus 334 a~aLRaq~HEfmNkLhtI~GLlql~-------~yd~a~~~I~~~~~~qq~~~~~l~~~i~---------------~~~lA 391 (537)
T COG3290 334 AEALRAQSHEFMNKLHTILGLLQLG-------EYDDALDYIQQESEEQQELIDSLSEKIK---------------DPVLA 391 (537)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHhhhhhhHHHHHHhcc---------------cHHHH
Confidence 3456788999999999999998773 2344556666666666666666544222 12233
Q ss_pred HHHHHHHHHHhhcCceEEEEeCCCCCC-eEEecHHHHHHHHHHHHHHhhcccC---CCcEEEEEEEEecCCCCccccccc
Q 006508 451 EAACLARCLSIYRGFGFSIEVDRSLPD-HVMGDERRVFQVILHMVGSLLNCNS---RRGTVLFRVVSENGSQDRNDKKWA 526 (642)
Q Consensus 451 ~~~~~~~~~~~~~~i~~~~~~~~~lp~-~v~~D~~~l~qvl~NLl~NAik~~~---~~g~I~i~v~~~~~~~~~~~~~~~ 526 (642)
..+---...+++.|+.+.++....+|. .-..+...+--++.||++||+++.. +++.|.+.++..++
T Consensus 392 g~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~---------- 461 (537)
T COG3290 392 GFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGD---------- 461 (537)
T ss_pred HHHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCC----------
Confidence 333333345677888888887776663 1456778888999999999999765 45777777766544
Q ss_pred ccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEE
Q 006508 527 TWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGL 606 (642)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i 606 (642)
.+.++|+|+|+|||++..+++|+..+++++ ..+.|.||++||+.|+.+||.|+++|+ .+.||+|++
T Consensus 462 -----------~lvieV~D~G~GI~~~~~~~iFe~G~Stk~--~~~rGiGL~Lvkq~V~~~~G~I~~~s~-~~~Gt~F~i 527 (537)
T COG3290 462 -----------ELVIEVADTGPGIPPEVRDKIFEKGVSTKN--TGGRGIGLYLVKQLVERLGGSIEVESE-KGQGTRFSI 527 (537)
T ss_pred -----------EEEEEEeCCCCCCChHHHHHHHhcCccccC--CCCCchhHHHHHHHHHHcCceEEEeeC-CCCceEEEE
Confidence 399999999999999999999998877665 248899999999999999999999998 688999999
Q ss_pred EEEeccCC
Q 006508 607 VLRFQLRP 614 (642)
Q Consensus 607 ~LP~~~~~ 614 (642)
.+|.....
T Consensus 528 ~iP~~~~~ 535 (537)
T COG3290 528 YIPKVKER 535 (537)
T ss_pred ECCCCccc
Confidence 99987543
No 46
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.85 E-value=8.6e-18 Score=190.05 Aligned_cols=249 Identities=12% Similarity=0.129 Sum_probs=169.2
Q ss_pred eEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 275 AAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNR 354 (642)
Q Consensus 275 ~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~ 354 (642)
.....|+...++..| .+..... ....+..+++.++.+++.++......++.++
T Consensus 305 ~~~~~~~~~~~~~~g-------------~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 357 (565)
T PRK10935 305 PWQILPLTMEDTVLG-------------YLHWQAS----LPCPDEPLMNNVAQMLGRGLYFNQAQKQQQQ---------- 357 (565)
T ss_pred ceEEEEEeeCCcceE-------------EEEecCC----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 345677776655544 4444322 2355778899999888887754333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH----Hhcc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006508 355 ALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSI----MQDV--NLNSDQRMIVETMMKSSNVLSTLISDVMDN 428 (642)
Q Consensus 355 ~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~l----L~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 428 (642)
+ ++.+....++||+++|+..+..+... +.+. ...++..+.+..+.+...++...+.+++..
T Consensus 358 -~------------~~~~~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~ 424 (565)
T PRK10935 358 -L------------LLMEERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTT 424 (565)
T ss_pred -H------------HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01111234788888888777665543 3322 224455667777787788888888888765
Q ss_pred CccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCC--eEEecHHHHHHHHHHHHHHhhcccCCCcE
Q 006508 429 SPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPD--HVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 429 s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~--~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
.+ ....++++.+.+++++..++.. .++.+.++. ++|. ....++.++.|++.|++.||+|| .+++.
T Consensus 425 ~~-------~~~~~~~l~~~l~~~~~~~~~~---~~~~i~~~~--~~~~~~~~~~~~~~l~qv~~nll~NA~k~-~~~~~ 491 (565)
T PRK10935 425 FR-------LTIQEANLGSALEEMLDQLRNQ---TDAKITLDC--RLPSQALDAQQQVHLLQIIREATLNAIKH-ANASE 491 (565)
T ss_pred cC-------CCCCCCCHHHHHHHHHHHHHHh---hCCeEEEEe--eCCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCCCe
Confidence 44 3345889999999999888754 233444433 2331 23344567999999999999996 45678
Q ss_pred EEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHH
Q 006508 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQL 586 (642)
Q Consensus 507 I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~ 586 (642)
+.+.+...++ .++.++|.|+|+|||++. ..|+|+||+||+++++.
T Consensus 492 i~i~~~~~~~--------------------~~~~i~V~D~G~Gi~~~~---------------~~~~glGL~i~~~iv~~ 536 (565)
T PRK10935 492 IAVSCVTNPD--------------------GEHTVSIRDDGIGIGELK---------------EPEGHYGLNIMQERAER 536 (565)
T ss_pred EEEEEEEcCC--------------------CEEEEEEEECCcCcCCCC---------------CCCCCcCHHHHHHHHHH
Confidence 8888765421 138899999999998742 12789999999999999
Q ss_pred cCCEEEEEecCCCCcEEEEEEEEecc
Q 006508 587 MQGNIWMVPSSHGFAQSMGLVLRFQL 612 (642)
Q Consensus 587 ~gG~I~v~s~~~g~Gt~f~i~LP~~~ 612 (642)
|||+|+++|. +|+||+|++.||...
T Consensus 537 ~~G~i~v~s~-~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 537 LGGTLTISQP-PGGGTTVSLTFPSQQ 561 (565)
T ss_pred cCCEEEEEEC-CCCcEEEEEEECCCC
Confidence 9999999999 588999999999763
No 47
>PRK13559 hypothetical protein; Provisional
Probab=99.85 E-value=4.3e-20 Score=196.80 Aligned_cols=186 Identities=8% Similarity=0.116 Sum_probs=142.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHH
Q 006508 370 RNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMI 449 (642)
Q Consensus 370 ~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li 449 (642)
+.+|++.++||+||||+.|.++.+++.. ..+..++++.+.+.+.++.++++++++.++ ..++++.+++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~---~~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~~ 237 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGR---ADDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEELI 237 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHHH
Confidence 3457888999999999999999998762 233456788888999999999999887654 3579999999
Q ss_pred HHHHHHHHHHHhhcCceEEEEeCCCCCCeEEec-HHHHHHHHHHHHHHhhcc---cCCCcEEEEEEEEecCCCCcccccc
Q 006508 450 KEAACLARCLSIYRGFGFSIEVDRSLPDHVMGD-ERRVFQVILHMVGSLLNC---NSRRGTVLFRVVSENGSQDRNDKKW 525 (642)
Q Consensus 450 ~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D-~~~l~qvl~NLl~NAik~---~~~~g~I~i~v~~~~~~~~~~~~~~ 525 (642)
++++..+.. .+..+.++.+ ++ .+..+ ...+.||+.||+.||+|| .+++|.|+|++....
T Consensus 238 ~~~~~~~~~----~~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~---------- 300 (361)
T PRK13559 238 RAQVAPYAP----RATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSP---------- 300 (361)
T ss_pred HHHHHhhcC----CCceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecC----------
Confidence 998776542 2345555432 21 12222 346999999999999998 567899999883221
Q ss_pred cccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHH-cCCEEEEEecCCCCcEEE
Q 006508 526 ATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQL-MQGNIWMVPSSHGFAQSM 604 (642)
Q Consensus 526 ~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~-~gG~I~v~s~~~g~Gt~f 604 (642)
++..+.+.+.|+|.|++++. .|+|+||.+|+++++. |||++++++. +.|++|
T Consensus 301 ---------~~~~~~i~v~d~G~~~~~~~----------------~~~g~Gl~i~~~~v~~~~gG~i~~~~~--~~G~~~ 353 (361)
T PRK13559 301 ---------EGAGFRIDWQEQGGPTPPKL----------------AKRGFGTVIIGAMVESQLNGQLEKTWS--DDGLLA 353 (361)
T ss_pred ---------CCCeEEEEEECCCCCCCCCC----------------CCCCcHHHHHHHHHHHHcCCeEEEEEc--CCeEEE
Confidence 12238899999999976542 2789999999999996 9999999987 459999
Q ss_pred EEEEEec
Q 006508 605 GLVLRFQ 611 (642)
Q Consensus 605 ~i~LP~~ 611 (642)
+++||..
T Consensus 354 ~l~~P~~ 360 (361)
T PRK13559 354 RIEIPSR 360 (361)
T ss_pred EEEEeCC
Confidence 9999964
No 48
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.82 E-value=1.7e-16 Score=162.73 Aligned_cols=402 Identities=14% Similarity=0.133 Sum_probs=252.6
Q ss_pred HHhhHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006508 90 LCGLTHLLNGWTY-GPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEA 168 (642)
Q Consensus 90 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ta~v~~~~ai~l~~lip~~l~~~~~e~~l~~~~~~l~~e~~~~~~~~~~ 168 (642)
.|..-.++.++++ .|.... -.++..+.+.+.+...+....++..+++.+..++--. ..+....++..+++
T Consensus 144 ~~E~lqM~iIL~~a~~~~~a----v~lVs~i~iPMil~Nsvgaa~fm~i~~~~~~~~E~~~-----a~~a~~aL~iA~~t 214 (557)
T COG3275 144 VAEMLQMLIILVIARPFADA----VDLVSNIAIPMILGNSVGAALFMRILLDRRAKFEKYA-----AVQAKLALKIANKT 214 (557)
T ss_pred HHHHHHHHHHhhccCcHHHH----HHHHhhccchhHhhcchhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhh
Confidence 6788888888887 443332 3677778888888888888777766666655443222 22233334445666
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHhhc
Q 006508 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGS 248 (642)
Q Consensus 169 ~~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (642)
++.+++. .+.+ =+..+.+.+.+.++++.++ .+|.+.- +.... .+.+ ..-...++..+...++..+
T Consensus 215 lplfr~g-------fn~e-s~~~va~Ii~~~~~~~AVa--iTd~e~i-lA~vg-~g~d---hhi~g~~i~s~~t~~ai~~ 279 (557)
T COG3275 215 LPLFRQG-------FNEE-SLMKVAEIIYEELGAGAVA--ITDREKL-LAFVG-IGDD---HHIPGKPIISSLTRKAIKT 279 (557)
T ss_pred hHHHHhh-------cChh-hHHHHHHHHHHHhCCCeEE--ecCHHHH-HHhhc-cccc---ccCCCCeeccHHHHHHHhh
Confidence 6666551 1111 2345567778888886444 4443321 11110 0000 0112334456777888888
Q ss_pred CCceEeCCCchhhhhccCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHHHHHH
Q 006508 249 DGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQ 328 (642)
Q Consensus 249 ~~~~~l~~~~~l~~~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~~a~q 328 (642)
++.+....... -.++ + ......+++..|+...+++ +|.+.+....++.++.-+.++.+.+|..
T Consensus 280 g~vv~~~~~e~-~~cs-h--~~c~l~s~lViPL~~~g~V-------------iGTiK~y~~~~~lis~~~r~la~Gia~l 342 (557)
T COG3275 280 GEVVYADGNEV-YECS-H--PTCKLGSALVIPLRGKGRV-------------IGTIKLYEAKARLISSINRELAEGIAQL 342 (557)
T ss_pred CCEEEEccchh-hccC-C--CCCCcCCceEeecccCCce-------------eeeEEEEeccHhHhhHHHHHHHHHHHHH
Confidence 88877755544 2222 1 1234568899998765444 5588888888999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHH
Q 006508 329 VLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIV 408 (642)
Q Consensus 329 va~al~~a~l~~e~~~~~~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l 408 (642)
+...++..+ .+++.+.+.+|+-++.+++- =+|-|-|-||+|...... .++..|+.+
T Consensus 343 ~SaQie~ge-----------~e~q~~ll~~AEik~LqaQv--------nPHFLFNaLNTIsa~IR~-----npdkAreLi 398 (557)
T COG3275 343 LSAQIEAGE-----------AERQRELLKQAEIKALQAQV--------NPHFLFNALNTISAVIRR-----NPDKARELI 398 (557)
T ss_pred HHHHHHHhH-----------HHHHHHHHHHHHHHHHHhcc--------ChHHHHHHHHHHHHHhcC-----ChHHHHHHH
Confidence 776664433 22333334444443333322 289999999999765421 122223322
Q ss_pred HHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHh--hcCceEEEEeCCCCCCeEEecHHHH
Q 006508 409 ETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSI--YRGFGFSIEVDRSLPDHVMGDERRV 486 (642)
Q Consensus 409 ~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~--~~~i~~~~~~~~~lp~~v~~D~~~l 486 (642)
-+++......++-++ .+.++|.+-++.+-..++-.-. ..++++.+++++.+- .+...+
T Consensus 399 -------l~LS~yfR~NL~~~~---------~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~-~~~iP~--- 458 (557)
T COG3275 399 -------LYLSTYFRYNLENNT---------QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELR-QVQIPS--- 458 (557)
T ss_pred -------HHHHHHHHHHhcCCc---------ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHh-hccCch---
Confidence 344444444333321 3577888888877666543222 234677777776542 122222
Q ss_pred HHHHHHHHHHhhccc----CCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccc
Q 006508 487 FQVILHMVGSLLNCN----SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLG 562 (642)
Q Consensus 487 ~qvl~NLl~NAik~~----~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f 562 (642)
-+++-|++||+||. .+.|.|+|++..++.. +++.|+|||.|++|+.
T Consensus 459 -filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~---------------------l~i~VeDng~li~p~~-------- 508 (557)
T COG3275 459 -FILQPLVENAIKHGISQLKDTGRVTISVEKEDAD---------------------LRIEVEDNGGLIQPDE-------- 508 (557)
T ss_pred -hhhhHHHHHHHHhcccchhcCCceEEEEEEeCCe---------------------EEEEEecCCCCcCCCC--------
Confidence 26788999999983 3579999999887654 9999999999999871
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHcCC---EEEEEecCCCCcEEEEEEEEeccCC
Q 006508 563 IRRIGNEGIEDRMSFSVCKKLVQLMQG---NIWMVPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 563 ~~~~~~~~~G~GLGL~i~k~iv~~~gG---~I~v~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
..|+|+||+.+++.++.+=| -+.+++. +..||++.+.+|.+..+
T Consensus 509 -------~~g~giGL~nv~~RLk~lyG~~~gl~i~~~-~q~gTri~f~lp~~~~~ 555 (557)
T COG3275 509 -------EDGTGIGLANVHKRLKLLYGDDEGLHIESL-EQAGTRIIFRLPLQRTA 555 (557)
T ss_pred -------CCCCChHHHHHHHHHHHhcCccccceEEec-cCCCcEEEEEecCcccc
Confidence 12899999999999997777 6888888 47799999999998654
No 49
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.79 E-value=4.6e-19 Score=155.34 Aligned_cols=108 Identities=15% Similarity=0.216 Sum_probs=97.8
Q ss_pred ecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccc
Q 006508 481 GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQ 560 (642)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~ 560 (642)
||+.++.+++.||++||++|+++++.|.|.+...++. +.|+|.|+|.||+++.++++|+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~---------------------~~i~i~d~G~gi~~~~l~~~~~ 59 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDDH---------------------LSIEISDNGVGIPPEELEKLFE 59 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTE---------------------EEEEEEESSSSTTHHHHHHHCS
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCe---------------------EEEEEEeccccccccccccchh
Confidence 6999999999999999999988889999999887543 8999999999999999999999
Q ss_pred cccccCC--CCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEe
Q 006508 561 LGIRRIG--NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRF 610 (642)
Q Consensus 561 ~f~~~~~--~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~ 610 (642)
++++... ....|+|+||++|+.++++|+|++++++. ++.||+|+|.+|+
T Consensus 60 ~~~~~~~~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~-~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 60 PFFTSDKSETSISGHGLGLYIVKQIAERHGGELTIESS-EGGGTTVTFTLPL 110 (111)
T ss_dssp TTSHSSSSSGGSSSSSHHHHHHHHHHHHTTEEEEEEEE-TTTEEEEEEEEEG
T ss_pred hcccccccccccCCCChHHHHHHHHHHHCCCEEEEEEc-CCCcEEEEEEEEC
Confidence 9887553 22358999999999999999999999999 5889999999997
No 50
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.78 E-value=6.9e-15 Score=153.66 Aligned_cols=330 Identities=13% Similarity=0.184 Sum_probs=220.9
Q ss_pred HHHhHHHH----HHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCC
Q 006508 153 WDLGREVG----IIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNY 228 (642)
Q Consensus 153 ~~l~~e~~----~~~~~~~~~~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~ 228 (642)
+.|++.|. .++++.+.+..||..++.+..+....+.++.++..+....++..+.+-+.++++...+..+.-.
T Consensus 225 ~~LE~rV~eKT~~L~~~Nq~Ls~LYqssr~L~ts~~~~~~l~~vLn~l~~~~~~~~~~l~l~~~~~e~~h~~~~~~---- 300 (574)
T COG3850 225 ADLEQRVEEKTRDLEQKNQRLSFLYQSSRRLHTSQIDDERLRHVLNRLQNLTGLAAVRLELYGGDDERNHQEHAEQ---- 300 (574)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhhcccceEEEEecCcchhhhhhhccC----
Confidence 44544444 4566677888899999999999999999999999999999998888877766543332221000
Q ss_pred CCCCCceecCChhHHHHhhcCCceEeCCCchhhhhccCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeC
Q 006508 229 SDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPN 308 (642)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~ 308 (642)
..+..+ + ...+....+..|+...+...| .+..
T Consensus 301 ----~di~~~--d---------------------------~~~~~~~~~~~~l~~~g~~Lg-------------~l~~-- 332 (574)
T COG3850 301 ----WDISEG--D---------------------------QPSGLKWPQEDPLTQQGHLLG-------------TLPW-- 332 (574)
T ss_pred ----cceecC--C---------------------------CCcccchhhhcchhhhhhhhe-------------eeec--
Confidence 000000 0 001111222234433333333 3222
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 006508 309 EQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSI 388 (642)
Q Consensus 309 ~~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I 388 (642)
.+.+...+..+++.++.+++.++...+..++.++ |. .+.+| +.|+.||.-.+.-.
T Consensus 333 --~~~l~~~d~~Ll~tl~~~L~rtL~~~~~q~~~qQ-----------Ll------lmEER------atIAReLHDSiAQs 387 (574)
T COG3850 333 --QRSLPEDDQQLLDTLVQQLGRTLALNKQQEQQQQ-----------LL------LMEER------ATIARELHDSIAQS 387 (574)
T ss_pred --cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH------HHHHH------HHHHHHHHHHHHHH
Confidence 5678889999999999999999966553222111 11 11111 23344444444444
Q ss_pred HHH----HHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHh
Q 006508 389 LGL----LSIMQD---VNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSI 461 (642)
Q Consensus 389 ~g~----~~lL~~---~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~ 461 (642)
..+ +++|+. +...++.++.+..|++..+...+-+.++|..-|+ ....-++..-++++++.+..
T Consensus 388 LS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~AL~~~~~~f~~--- 457 (574)
T COG3850 388 LSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPPALEQMLAEFSN--- 457 (574)
T ss_pred HHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHHHHHHHHHHHHh---
Confidence 444 444553 2456677889999999999999989998876553 33455677777777776654
Q ss_pred hcCceEEEEeCCCCCCeEEecH---HHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceE
Q 006508 462 YRGFGFSIEVDRSLPDHVMGDE---RRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVY 538 (642)
Q Consensus 462 ~~~i~~~~~~~~~lp~~v~~D~---~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (642)
+.+++++++ ..+|. ...|+ ..+-||+..-+.||+| +..+.+|.|++...++.
T Consensus 458 qtg~~~~l~--~qlp~-~~lpa~qqvHlLqIvREAlsNa~K-Ha~As~i~V~~~~~~g~--------------------- 512 (574)
T COG3850 458 QTGITVTLD--YQLPP-RALPAHQQVHLLQIVREALSNAIK-HAQASEIKVTVSQNDGQ--------------------- 512 (574)
T ss_pred ccCCeEEEe--ccCCC-CCCCHHHHHHHHHHHHHHHHHHHH-hcccCeEEEEEEecCCe---------------------
Confidence 345555554 34442 23333 4688999999999999 56788999999877543
Q ss_pred EEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEe
Q 006508 539 IRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRF 610 (642)
Q Consensus 539 v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~ 610 (642)
+++.|+|||+|||+.... +| -.||.|++...+.+||.+.+++. +|+||.+.+++|-
T Consensus 513 ~~~~VeDnG~Gi~~~~e~--------------~g-HyGL~IM~ERA~~L~~~L~i~~~-~~gGT~V~ltf~~ 568 (574)
T COG3850 513 VTLTVEDNGVGIDEAAEP--------------SG-HYGLNIMRERAQRLGGQLRIRRR-EGGGTEVSLTFPP 568 (574)
T ss_pred EEEEEeeCCcCCCCccCC--------------CC-CcchHHHHHHHHHhcCeEEEeec-CCCCeEEEEEecc
Confidence 899999999999877311 13 57999999999999999999999 5899999999983
No 51
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.70 E-value=5e-16 Score=173.58 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=117.8
Q ss_pred eeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHH---HHHHHHHhhccc------------CCCcEE
Q 006508 443 FRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQV---ILHMVGSLLNCN------------SRRGTV 507 (642)
Q Consensus 443 ~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qv---l~NLl~NAik~~------------~~~g~I 507 (642)
+.+..++...-..++..+...+.++++.+... .+..|+..+.++ |.||+.||++|. +.+|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 45677777777777777777777777776654 378899999888 679999999984 456889
Q ss_pred EEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhh---------------------hccccccccC
Q 006508 508 LFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVST---------------------SAAQLGIRRI 566 (642)
Q Consensus 508 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~---------------------~if~~f~~~~ 566 (642)
.+++...++. +.|+|+|+|.||+++.+. .+|+|++++.
T Consensus 420 ~l~a~~~~~~---------------------v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~ 478 (670)
T PRK10547 420 ILSAEHQGGN---------------------ICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTA 478 (670)
T ss_pred EEEEEEcCCE---------------------EEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccc
Confidence 9988765432 889999999999987653 5899976654
Q ss_pred C--CCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEeccC
Q 006508 567 G--NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 567 ~--~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
. +..+|.|+||.+||++++.|||+|+++|. +|+||+|++.||+...
T Consensus 479 ~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~-~g~Gt~f~i~LPltla 526 (670)
T PRK10547 479 EQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSK-QGKGTTIRILLPLTLA 526 (670)
T ss_pred cccccCCCCchhHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEEechhh
Confidence 3 23469999999999999999999999999 6999999999998753
No 52
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.54 E-value=8.4e-12 Score=124.06 Aligned_cols=192 Identities=10% Similarity=0.162 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeH
Q 006508 366 ASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRL 445 (642)
Q Consensus 366 ~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L 445 (642)
.+..|.+....+-+|+..-+++|..-+.+.++...++..++....|++-+.++..-+..++.--| +...+...+
T Consensus 299 EEsiRk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l 372 (497)
T COG3851 299 EESIRKDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTL 372 (497)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcC------CcccccccH
Confidence 34567778888888999999999999999988777888888888899888888888888876544 233457778
Q ss_pred HHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecH---HHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCccc
Q 006508 446 HAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDE---RRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRND 522 (642)
Q Consensus 446 ~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~---~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~ 522 (642)
.+.++++++.++ ..++++...++...+ ...-|+ .-+.++.+++++|-+| +.+...|+|.....++.
T Consensus 373 ~qai~~l~~Em~--~~ergihcq~~~~~n---~~~ldet~rvTLyRl~QE~LNNI~K-HA~AS~V~i~l~~~~e~----- 441 (497)
T COG3851 373 EQAIRSLLREME--LEERGIHCQLDWRIN---ETALDETQRVTLYRLCQELLNNICK-HADASAVTIQLWQQDER----- 441 (497)
T ss_pred HHHHHHHHHHhh--hhhcCeEEEeccccC---cccCCcceeEeHHHHHHHHHHHHHh-ccccceEEEEEeeCCcE-----
Confidence 888888887765 456777666654322 122233 4588999999999999 67788999998766442
Q ss_pred ccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcE
Q 006508 523 KKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQ 602 (642)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt 602 (642)
+.++|+|||.|+|+.. +-.|+||.-.++.|...||++.++|. .||
T Consensus 442 ----------------l~Lei~DdG~Gl~~~~----------------~v~G~Gl~GmrERVsaLGG~ltlssq---~GT 486 (497)
T COG3851 442 ----------------LMLEIEDDGSGLPPGS----------------GVQGFGLTGMRERVSALGGTLTLSSQ---HGT 486 (497)
T ss_pred ----------------EEEEEecCCcCCCCCC----------------CccCcCcchHHHHHHHhCCceEEEec---cCc
Confidence 8899999999998663 14688999999999999999999986 489
Q ss_pred EEEEEEE
Q 006508 603 SMGLVLR 609 (642)
Q Consensus 603 ~f~i~LP 609 (642)
++.+.+|
T Consensus 487 rviVnLP 493 (497)
T COG3851 487 RVIVNLP 493 (497)
T ss_pred EEEEecc
Confidence 9999999
No 53
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.52 E-value=7.5e-13 Score=148.87 Aligned_cols=146 Identities=14% Similarity=0.194 Sum_probs=111.8
Q ss_pred eeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHH---HHHHHHHhhcc------------cCCCcEE
Q 006508 443 FRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQV---ILHMVGSLLNC------------NSRRGTV 507 (642)
Q Consensus 443 ~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qv---l~NLl~NAik~------------~~~~g~I 507 (642)
+.+..++...-..++.++..-+-++++.+... -+..|..-++++ |.|||.||+.| .++.|+|
T Consensus 390 vP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~---~telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I 466 (716)
T COG0643 390 VPFEQVFSRFPRMVRDLARKLGKQVELVIEGE---DTELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTI 466 (716)
T ss_pred eeHHHHHhhccHHHHHHHHHhCCeeEEEEecC---CeeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceE
Confidence 34455555555555555555455566666554 477888777766 89999999998 2456999
Q ss_pred EEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhh------------------------hcccccc
Q 006508 508 LFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVST------------------------SAAQLGI 563 (642)
Q Consensus 508 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~------------------------~if~~f~ 563 (642)
+++++..++. +.|+|+|+|.||+.+.+. -||.|.|
T Consensus 467 ~L~A~~~gn~---------------------ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGF 525 (716)
T COG0643 467 TLSAYHEGNN---------------------IVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGF 525 (716)
T ss_pred EEEEEcCCCe---------------------EEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCC
Confidence 9999877654 999999999999766542 2588877
Q ss_pred ccCC--CCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEeccC
Q 006508 564 RRIG--NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 564 ~~~~--~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
++.. +.-+|.|.||=+||+-++.+||+|.++|. +|+||+|++.||+...
T Consensus 526 STa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~-~G~GT~Fti~LPLTLa 576 (716)
T COG0643 526 STAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSE-PGKGTTFTIRLPLTLA 576 (716)
T ss_pred CcchhhhcccCCccCHHHHHHHHHHcCCEEEEEec-CCCCeEEEEecCcHHH
Confidence 6554 33479999999999999999999999999 6999999999998643
No 54
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.50 E-value=9.4e-12 Score=132.77 Aligned_cols=163 Identities=10% Similarity=0.167 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCceEEEEeCCCCCCeE
Q 006508 400 LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHV 479 (642)
Q Consensus 400 ~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v 479 (642)
.+++.++.++.+.+.++...+-+..+..- +.+...+-..+...+....+......++.+..+.....+..-
T Consensus 203 ~~e~~~~~l~~i~~~~~e~l~evR~~v~~---------Lrp~~l~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 273 (365)
T COG4585 203 DAEKAQEELKEIEKLLREALQEVRALVRD---------LRPVELEGLGLVEALRALLADFEERTGITVDLSLGSELERLP 273 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCchhhcchHHHHHHHHHHHHHhhcCeEEEEecCcccccCC
Confidence 33445566666665555444444433321 111222222234444444444445555666655543222233
Q ss_pred EecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhcc
Q 006508 480 MGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAA 559 (642)
Q Consensus 480 ~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if 559 (642)
..-+..+.++++..++|++| +.+..++.|++...++. +.++|.|||.|.+++..
T Consensus 274 ~~~e~~l~rivQEaltN~~r-Ha~A~~v~V~l~~~~~~---------------------l~l~V~DnG~Gf~~~~~---- 327 (365)
T COG4585 274 PEAEDALFRIVQEALTNAIR-HAQATEVRVTLERTDDE---------------------LRLEVIDNGVGFDPDKE---- 327 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHh-ccCCceEEEEEEEcCCE---------------------EEEEEEECCcCCCcccc----
Confidence 45567899999999999999 56778889988877554 99999999999776631
Q ss_pred ccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEe
Q 006508 560 QLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRF 610 (642)
Q Consensus 560 ~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~ 610 (642)
+.|+||.-.|+.++..||++++.|. +|+||++++++|+
T Consensus 328 ------------~~~~GL~~mreRv~~lgG~l~i~S~-~g~Gt~i~i~lPl 365 (365)
T COG4585 328 ------------GGGFGLLGMRERVEALGGTLTIDSA-PGQGTTVTITLPL 365 (365)
T ss_pred ------------CCCcchhhHHHHHHHcCCEEEEEec-CCCceEEEEecCC
Confidence 2579999999999999999999999 4999999999995
No 55
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.50 E-value=1.4e-13 Score=148.85 Aligned_cols=140 Identities=12% Similarity=0.181 Sum_probs=101.0
Q ss_pred EEecHHHHHHHHHHHHHHhhcccCCCc---EEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhh
Q 006508 479 VMGDERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVS 555 (642)
Q Consensus 479 v~~D~~~l~qvl~NLl~NAik~~~~~g---~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~ 555 (642)
..++...|.|++.||++||++|...+| .|.|.+...+. ++.++.|.|+|||+||+++.+
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~------------------~~~~~~I~V~DNG~GIp~e~l 91 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDE------------------GKDHYRVTVEDNGPGIPPEEI 91 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccC------------------CCcEEEEEEEcCCCCCCHHHH
Confidence 445568899999999999999876655 57777654311 122478999999999999999
Q ss_pred hhccccccccCC-----CCCCCCcchHHHHHHHHHHcCCE-EEEEecCCCCcE-EEEEEEEeccCCCCCCCCCCCCCCCC
Q 006508 556 TSAAQLGIRRIG-----NEGIEDRMSFSVCKKLVQLMQGN-IWMVPSSHGFAQ-SMGLVLRFQLRPSXXXXXXXLLYPYL 628 (642)
Q Consensus 556 ~~if~~f~~~~~-----~~~~G~GLGL~i~k~iv~~~gG~-I~v~s~~~g~Gt-~f~i~LP~~~~~~~~~~~~~~~~~~~ 628 (642)
+++|++|+.+.. ...+++|+||++|+.+++.|+|. +++.|. .+.|+ .|++.+|+......+...... ..
T Consensus 92 ~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~-~~~g~~~~~~~l~id~~kn~g~i~~~~---~~ 167 (535)
T PRK04184 92 PKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISS-TGGSKKAYYFELKIDTKKNEPIILERE---EV 167 (535)
T ss_pred HHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEe-cCCCceEEEEEEEecccccCCeecccc---cc
Confidence 999998754321 12246899999999999999996 999998 47777 899999887543222111111 11
Q ss_pred CcCCCCCccccc
Q 006508 629 NLENLRSTHIPI 640 (642)
Q Consensus 629 ~~~~~~~~~ili 640 (642)
....++|++|.|
T Consensus 168 ~~~~~~GT~V~V 179 (535)
T PRK04184 168 DWDRWHGTRVEL 179 (535)
T ss_pred CCCCCCCEEEEE
Confidence 134578998876
No 56
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.45 E-value=1.6e-12 Score=112.42 Aligned_cols=109 Identities=20% Similarity=0.276 Sum_probs=92.4
Q ss_pred ecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccc
Q 006508 481 GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQ 560 (642)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~ 560 (642)
+|+..+.+++.|+++|+++|...++.+.|++...++ .+.+.|.|+|.|++++...+.|.
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~---------------------~~~i~i~d~g~g~~~~~~~~~~~ 59 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGD---------------------HLEITVEDNGPGIPPEDLEKIFE 59 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC---------------------EEEEEEEeCCCCCCHHHHHHHhc
Confidence 477899999999999999987767888888876543 38899999999999999999998
Q ss_pred cccccCC--CCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEec
Q 006508 561 LGIRRIG--NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 561 ~f~~~~~--~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
+++.... ....+.|+||++|+.+++.|+|++++.+. .+.|++|++.+|+.
T Consensus 60 ~~~~~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~~~~ 111 (111)
T smart00387 60 PFFRTDGRSRKIGGTGLGLSIVKKLVELHGGEISVESE-PGGGTTFTITLPLE 111 (111)
T ss_pred CeEECCCCCCCCCcccccHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEeeCC
Confidence 8765441 22347899999999999999999999988 57899999999973
No 57
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.38 E-value=5.1e-12 Score=139.18 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=91.3
Q ss_pred hhcCceEEEEeCCCCCCeEEec--HHHHHHHHHHHHHHhhcccCCCc---EEEEEEEEecCCCCcccccccccccccCCC
Q 006508 461 IYRGFGFSIEVDRSLPDHVMGD--ERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDG 535 (642)
Q Consensus 461 ~~~~i~~~~~~~~~lp~~v~~D--~~~l~qvl~NLl~NAik~~~~~g---~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 535 (642)
.++.+.+..-+..+.+ .+-.| ...|.+++.|||+||++|...+| .|.|.+...++
T Consensus 21 ~~~~iS~aEfF~kN~~-~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~------------------- 80 (795)
T PRK14868 21 SQREISIAEFFEKNKH-MLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGD------------------- 80 (795)
T ss_pred hccccceeeecccCcc-eeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCC-------------------
Confidence 3466777766766655 44444 67899999999999999876665 57777754322
Q ss_pred ceEEEEEEEECCCCCCchhhhhccccccccC-------CCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEE
Q 006508 536 DVYIRFEILLNEGGSQPEVSTSAAQLGIRRI-------GNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 536 ~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~-------~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
++.|.|+|||+||+++.++++|++|+++. .....|.|||+++|...+ .+||.+++.|...+.+..+.+.|
T Consensus 81 --~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sql-t~GgpI~I~S~~~~~~~g~~~~L 157 (795)
T PRK14868 81 --YYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQL-TSGKPAKITSRTQGSEEAQYFEL 157 (795)
T ss_pred --EEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHH-cCCCcEEEEeCCCCCCceeEEEE
Confidence 38899999999999999999999875321 122346666666666665 37889999998434344454555
Q ss_pred EeccC
Q 006508 609 RFQLR 613 (642)
Q Consensus 609 P~~~~ 613 (642)
++...
T Consensus 158 ~Id~g 162 (795)
T PRK14868 158 IIDTD 162 (795)
T ss_pred EEecC
Confidence 55544
No 58
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.38 E-value=2.2e-13 Score=156.85 Aligned_cols=242 Identities=22% Similarity=0.237 Sum_probs=194.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHHH
Q 006508 373 FQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEA 452 (642)
Q Consensus 373 ~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~~ 452 (642)
|.+.++||+|+|++. |....+.+...+.+++.+.......+.....+++++++.++.+.|..++.-.+|++..++..+
T Consensus 224 ~~~~~sHeir~p~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~ 301 (786)
T KOG0519|consen 224 FLATLSHEIRTPLNG--GMLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFV 301 (786)
T ss_pred hcccccceeeccccc--CcceEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhh
Confidence 999999999999987 555555566788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcc--cccc-----
Q 006508 453 ACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRN--DKKW----- 525 (642)
Q Consensus 453 ~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~--~~~~----- 525 (642)
...+.+.+..++..+....+.+.|..+.+|+.++.|++.|+++||+| .+..|.+..++.........+ ..+|
T Consensus 302 ~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik-~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~ 380 (786)
T KOG0519|consen 302 ISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIK-FTHAGHLEESVIAREELSESNDVLLRAKEEAH 380 (786)
T ss_pred hhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceec-ccccceEEEEEEeehhcchhhHHHHhhhhhhh
Confidence 99999999999999999888888999999999999999999999999 667788887776554321100 0011
Q ss_pred -cccc--------------c---ccCCC--ceEEEEEEEECCCCCCchhhhh-ccccccc---cCCCCCCCCcchHHHHH
Q 006508 526 -ATWR--------------Q---SSVDG--DVYIRFEILLNEGGSQPEVSTS-AAQLGIR---RIGNEGIEDRMSFSVCK 581 (642)
Q Consensus 526 -~~~~--------------~---~~~~~--~~~v~i~V~D~G~Gi~~~~~~~-if~~f~~---~~~~~~~G~GLGL~i~k 581 (642)
..+. + +.+.. -..-.+.+.|+|.+|+...... +|..|-. ...+...|+|+|+.+|+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~ 460 (786)
T KOG0519|consen 381 MAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVF 460 (786)
T ss_pred hccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhc
Confidence 0000 0 00000 0123456889999999988877 7776643 22334469999999999
Q ss_pred HHHHHcCCEEEEEecCCCCcEEEEEEEEeccCCCCCC
Q 006508 582 KLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXX 618 (642)
Q Consensus 582 ~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~~~~~ 618 (642)
.+++.++|.+...+. ...|++|++.+++....+.+.
T Consensus 461 ~l~~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~ 496 (786)
T KOG0519|consen 461 SLVELMSGEISDISC-ISLGKTFSFTLDLLTNLPKSV 496 (786)
T ss_pred cHHHHHHHHhhhhhh-hccCceeeEEEEeccCCCccc
Confidence 999999999999999 588999999999986655433
No 59
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.36 E-value=4.8e-10 Score=109.82 Aligned_cols=196 Identities=10% Similarity=0.104 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHH
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~l 448 (642)
.+..++.-+.|.+||-|..|.+++.+-.+...++ .++.+...+.-...|.. +.+.+.-+ ....++...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sla~-~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSLAL-IHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHH-HHHHHhcC---------CcceEcHHHH
Confidence 4566788899999999999999988766544443 33444444433333332 33333321 2347888899
Q ss_pred HHHHHHHHHHHHhhcCceEEEEeCCCCCCeEEec-HHHHHHHHHHHHHHhhcccC---CCcEEEEEEEEecCCCCccccc
Q 006508 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGD-ERRVFQVILHMVGSLLNCNS---RRGTVLFRVVSENGSQDRNDKK 524 (642)
Q Consensus 449 i~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D-~~~l~qvl~NLl~NAik~~~---~~g~I~i~v~~~~~~~~~~~~~ 524 (642)
++.+...+.+....+.+.+..+..+++ .+..| ..-|--++..|+.||+||.. ++|.|.|+++..++..
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~------ 158 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGG------ 158 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCC------
Confidence 999888888765445566666555432 23333 34588899999999999943 4799999998775431
Q ss_pred ccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHH-HHcCCEEEEEecCCCCcEE
Q 006508 525 WATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLV-QLMQGNIWMVPSSHGFAQS 603 (642)
Q Consensus 525 ~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv-~~~gG~I~v~s~~~g~Gt~ 603 (642)
...+.|+|+|.|+|.+.- + ...|+|+.+++.++ +..||.+...+. + ||.
T Consensus 159 -------------~~~l~v~deg~G~~~~~~------~--------~~~g~G~~Lv~~lv~~q~~g~~~~~~~--~-Gt~ 208 (221)
T COG3920 159 -------------RFLLTVWDEGGGPPVEAP------L--------SRGGFGLQLVERLVPEQLGGELEDERP--D-GTE 208 (221)
T ss_pred -------------eEEEEEEECCCCCCCCCC------C--------CCCCcHHHHHHHHHHHHcCCeEEEEcC--C-CEE
Confidence 367889999999876631 0 15789999999999 899999999876 3 999
Q ss_pred EEEEEEeccC
Q 006508 604 MGLVLRFQLR 613 (642)
Q Consensus 604 f~i~LP~~~~ 613 (642)
|++.+|....
T Consensus 209 ~~i~~~~~~~ 218 (221)
T COG3920 209 FRLRFPLSEA 218 (221)
T ss_pred EEEEEecccc
Confidence 9999998643
No 60
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.35 E-value=4.6e-08 Score=96.64 Aligned_cols=199 Identities=12% Similarity=0.144 Sum_probs=136.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHH
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~l 448 (642)
.|..+...+-..+..-|-+....+++....-.++.. -....|.+.++.|..-|+++..+|.--. +--.+..-|..-
T Consensus 250 Er~rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH~LR---P~~LDDLGL~aA 325 (459)
T COG4564 250 ERARLARELHDGISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISHDLR---PRALDDLGLTAA 325 (459)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhccccC---hhhhhhhhHHHH
Confidence 334444555555667777777788877654322222 1225678888999999999988876211 111122333444
Q ss_pred HHHHHHHHHHHHhhcCceEEEEeCCCCCCeE-EecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccc
Q 006508 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHV-MGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWAT 527 (642)
Q Consensus 449 i~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v-~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~ 527 (642)
++..++.++ .+.++.++++.+.. |..+ ..-...+.+|.+.-+.|-=+|. ...+|+|..+..++.
T Consensus 326 Le~L~~~f~---~~tg~~itle~~~~-p~~l~~e~~talyRv~QEaltNIErHa-~Atrv~ill~~~~d~---------- 390 (459)
T COG4564 326 LEALLEDFK---ERTGIEITLEFDTQ-PGKLKPEVATALYRVVQEALTNIERHA-GATRVTILLQQMGDM---------- 390 (459)
T ss_pred HHHHHHHhh---hccCeEEEEEecCC-cccCCcHHHHHHHHHHHHHHHHHHhhc-CCeEEEEEeccCCcc----------
Confidence 444444333 56778888776543 3222 2234679999999999998854 677888888766544
Q ss_pred cccccCCCceEEEEEEEECCCCCCchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEE
Q 006508 528 WRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
+++.|+|||+|++.+.... .-.|+||-.+++.+...||.+.++|.| +||..++.
T Consensus 391 -----------vql~vrDnG~GF~~~~~~~-------------~~~GiGLRNMrERma~~GG~~~v~s~p--~GTel~v~ 444 (459)
T COG4564 391 -----------VQLMVRDNGVGFSVKEALQ-------------KRHGIGLRNMRERMAHFGGELEVESSP--QGTELTVL 444 (459)
T ss_pred -----------eEEEEecCCCCccchhhcc-------------CccccccccHHHHHHHhCceEEEEecC--CCcEEEEE
Confidence 9999999999987664321 136999999999999999999999995 49999999
Q ss_pred EEecc
Q 006508 608 LRFQL 612 (642)
Q Consensus 608 LP~~~ 612 (642)
||...
T Consensus 445 Lp~~~ 449 (459)
T COG4564 445 LPLDA 449 (459)
T ss_pred ecchh
Confidence 99864
No 61
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.34 E-value=1.9e-10 Score=132.44 Aligned_cols=185 Identities=14% Similarity=0.208 Sum_probs=138.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecC--CCCCCCCCceecCC
Q 006508 162 IMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNG--RNYSDMCSSIPITD 239 (642)
Q Consensus 162 ~~~~~~~~~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~ 239 (642)
++++....+.+.++++.+.+..|.++++..+++.+.+.+++++|+|++++++...+.+....+. ..........+...
T Consensus 177 L~~~r~~~~~L~eIs~~l~s~~dl~ell~~I~~~i~~~~~a~~~~I~L~d~~~~~L~~~aa~g~~~~~~~~~~~~~~~~~ 256 (686)
T PRK15429 177 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAG 256 (686)
T ss_pred HHhhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCcEEEEEecccChhhcccccccCCccc
Confidence 3444455888999999999999999999999999999999999999999998877765433221 21111233455556
Q ss_pred hhHHHHhhcCCceEeCCCchhhhhc----cCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCC
Q 006508 240 QDVVRIKGSDGVNILGPDSELAAAS----SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWS 315 (642)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~~l~~~~----~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~ 315 (642)
+.+++++.++++.++++........ .......+..+++++||...++..| ++.+.+.....|+
T Consensus 257 ~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~v~G-------------vL~l~~~~~~~F~ 323 (686)
T PRK15429 257 TLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLG-------------VLKLAQCEEKVFT 323 (686)
T ss_pred chHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeEEECCEEEE-------------EEEEeeCCCCcCC
Confidence 7889999999999885432111110 0011123567899999998766655 7777666788999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 316 NQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQA 359 (642)
Q Consensus 316 ~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~a 359 (642)
+++++++..+|+|+|+|++++..+++.++..+++++.+..+.+.
T Consensus 324 ~~dl~lL~~iA~~~A~Aie~a~~~~~~~~~~~~L~~e~~~lt~~ 367 (686)
T PRK15429 324 TTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQ 367 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHh
Confidence 99999999999999999999999999888888887766554433
No 62
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.28 E-value=3.4e-11 Score=129.06 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=82.5
Q ss_pred EEecHHHHHHHHHHHHHHhhcccCCCc---EEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhh
Q 006508 479 VMGDERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVS 555 (642)
Q Consensus 479 v~~D~~~l~qvl~NLl~NAik~~~~~g---~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~ 555 (642)
+.+|...+.+++.||++||++|...+| .|.|.+...++ .++.++|.|||+||+++.+
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~--------------------~~~~I~V~DNG~GIp~edl 81 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGK--------------------DHYKVTVEDNGPGIPEEYI 81 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCC--------------------ceEEEEEEECCCCCCHHHH
Confidence 567889999999999999999876555 67776654321 2377999999999999999
Q ss_pred hhccccccccCC-----CCCCCCcchHHHHHHHHHHcCCE-EEEEecCCCCcEEE
Q 006508 556 TSAAQLGIRRIG-----NEGIEDRMSFSVCKKLVQLMQGN-IWMVPSSHGFAQSM 604 (642)
Q Consensus 556 ~~if~~f~~~~~-----~~~~G~GLGL~i~k~iv~~~gG~-I~v~s~~~g~Gt~f 604 (642)
+++|++|+++.. ...++.|+||++|+.+.+.|+|+ +++.|.. + |..|
T Consensus 82 ~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~-~-g~~~ 134 (488)
T TIGR01052 82 PKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISST-G-GEIY 134 (488)
T ss_pred HhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEec-C-CceE
Confidence 999999755332 12347999999999999999998 9999984 4 5555
No 63
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.24 E-value=6.7e-11 Score=100.44 Aligned_cols=101 Identities=19% Similarity=0.231 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhhcccCC-CcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccc
Q 006508 486 VFQVILHMVGSLLNCNSR-RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIR 564 (642)
Q Consensus 486 l~qvl~NLl~NAik~~~~-~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~ 564 (642)
+.+++.++++||++|... ++.|.|.+...++ .+.|.|.|+|.|+++....+.+.++..
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~---------------------~~~v~i~d~g~g~~~~~~~~~~~~~~~ 59 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGD---------------------HLEIRVEDNGPGIPEEDLERIFERFSD 59 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecCC---------------------EEEEEEEeCCCCCCHHHHHHHhhhhhc
Confidence 357999999999998664 6778888765533 288999999999999999988876511
Q ss_pred -cCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEE
Q 006508 565 -RIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 565 -~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
.......+.|+||++|+++++.|||++++.+. .+.|++|++.+
T Consensus 60 ~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~ 103 (103)
T cd00075 60 GSRSRKGGGTGLGLSIVKKLVELHGGRIEVESE-PGGGTTFTITL 103 (103)
T ss_pred CCCCCCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCcEEEEEEC
Confidence 11122347899999999999999999999988 46799988764
No 64
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.24 E-value=3e-11 Score=95.57 Aligned_cols=66 Identities=27% Similarity=0.556 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhc-cCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhhCccCCC
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQD-VNLNSDQ-RMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~lL~~-~~~~~~~-~~~l~~i~~~~~~l~~li~~ll~~s~~e~~ 434 (642)
.+++|++.++|||||||++|.++++++.+ ...++++ +++++.|..+++++.+++++++++++.++|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 36789999999999999999999999998 7788888 999999999999999999999999998876
No 65
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.24 E-value=7.9e-11 Score=129.93 Aligned_cols=114 Identities=10% Similarity=0.095 Sum_probs=88.5
Q ss_pred EEecHHH---HHHHHHHHHHHhhcccCCCc---EEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCc
Q 006508 479 VMGDERR---VFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQP 552 (642)
Q Consensus 479 v~~D~~~---l~qvl~NLl~NAik~~~~~g---~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~ 552 (642)
+.++... |.+++.||++||++|...++ .|.|.+...+ ..++.+.|.|||+||++
T Consensus 27 ~lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g--------------------~~~~~I~V~DNG~GIp~ 86 (659)
T PRK14867 27 MLGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLG--------------------SDHYKVAVEDNGPGIPP 86 (659)
T ss_pred eeechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC--------------------CcEEEEEEEeeCeeCCH
Confidence 4555544 45999999999999865544 6777765432 12488999999999999
Q ss_pred hhhhhccccccccCC-----CCCCCCcchHHHHHHHHHHc-CCEEEEEecCCCCcEEEEEEEEeccC
Q 006508 553 EVSTSAAQLGIRRIG-----NEGIEDRMSFSVCKKLVQLM-QGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 553 ~~~~~if~~f~~~~~-----~~~~G~GLGL~i~k~iv~~~-gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
+.+.++|++|+++.. ...++.|+||+++..+.+.+ ||.+++.|. .+.|++|++.+|+...
T Consensus 87 e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~-~g~G~~f~i~L~i~i~ 152 (659)
T PRK14867 87 EFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTS-TGDGKIHEMEIKMSVE 152 (659)
T ss_pred HHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEE-cCCCEEEEEEEEEEec
Confidence 999999999765321 22347899999999999875 667999998 5889999999999763
No 66
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.21 E-value=1.3e-10 Score=105.75 Aligned_cols=100 Identities=11% Similarity=0.062 Sum_probs=78.5
Q ss_pred EecHHHHHHHHHHHHHHhhccc---CCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhh
Q 006508 480 MGDERRVFQVILHMVGSLLNCN---SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVST 556 (642)
Q Consensus 480 ~~D~~~l~qvl~NLl~NAik~~---~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~ 556 (642)
..|...+.+++.|++.||++|. +.++.|.|++...++. +.++|.|+|.|+++ .+
T Consensus 34 ~~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~---------------------~~i~I~D~G~gi~~--~~ 90 (137)
T TIGR01925 34 MEELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHE---------------------VYITVRDEGIGIEN--LE 90 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCE---------------------EEEEEEEcCCCcCc--hh
Confidence 3455679999999999999974 3367888888765432 88999999999973 66
Q ss_pred hccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEE
Q 006508 557 SAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 557 ~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
++|++|++... ...+.|+||+++++ +.+++++++. .++|++|+++.
T Consensus 91 ~~~~~~~~~~~-~~~~~GlGL~lv~~----~~~~l~~~~~-~~~Gt~v~i~~ 136 (137)
T TIGR01925 91 EAREPLYTSKP-ELERSGMGFTVMEN----FMDDVSVDSE-KEKGTKIIMKK 136 (137)
T ss_pred HhhCCCcccCC-CCCCCcccHHHHHH----hCCcEEEEEC-CCCCeEEEEEe
Confidence 78888876543 33479999999876 4579999998 58899998863
No 67
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.20 E-value=4.4e-09 Score=115.30 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhccc----CCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccc
Q 006508 487 FQVILHMVGSLLNCN----SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLG 562 (642)
Q Consensus 487 ~qvl~NLl~NAik~~----~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f 562 (642)
.-+++.|++||++|. .++|.|.|.+...++ ++.++|.|||+||+++....+....
T Consensus 352 ~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~---------------------~i~i~i~Dng~g~~~~~~~~~~~~~ 410 (456)
T COG2972 352 KLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDD---------------------VIQISISDNGPGIDEEKLEGLSTKG 410 (456)
T ss_pred hHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCC---------------------EEEEEEeeCCCCCChhHHHHHHhhc
Confidence 347889999999974 457788888876633 3999999999999998776654321
Q ss_pred cccCCCCCCC-CcchHHHHHHHHHHcCCE--EEEEecCCCCcEEEEEEEEecc
Q 006508 563 IRRIGNEGIE-DRMSFSVCKKLVQLMQGN--IWMVPSSHGFAQSMGLVLRFQL 612 (642)
Q Consensus 563 ~~~~~~~~~G-~GLGL~i~k~iv~~~gG~--I~v~s~~~g~Gt~f~i~LP~~~ 612 (642)
++ .|+||.-++++++.+-|. +.++|. +|+||...+.+|...
T Consensus 411 --------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~-~~~gt~v~~~~~~~~ 454 (456)
T COG2972 411 --------ENRSGIGLSNVKERLKLYFGEPGLSIDSQ-PGKGTFVQIIIPKRE 454 (456)
T ss_pred --------cCcccccHHHHHHHHHHeeCCcceeEeec-CCCcEEEEEEeehhh
Confidence 12 499999999999998887 688999 599999999999764
No 68
>PRK03660 anti-sigma F factor; Provisional
Probab=99.14 E-value=5.5e-10 Score=102.80 Aligned_cols=104 Identities=12% Similarity=0.072 Sum_probs=79.8
Q ss_pred ecHHHHHHHHHHHHHHhhcccC---CCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhh
Q 006508 481 GDERRVFQVILHMVGSLLNCNS---RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTS 557 (642)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~~---~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~ 557 (642)
.|...+.+++.|++.||++|.. .++.|.|++...++ .+.++|.|+|.|+++ ..+
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~---------------------~l~i~I~D~G~g~~~--~~~ 91 (146)
T PRK03660 35 EELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEE---------------------ELEITVRDEGKGIED--IEE 91 (146)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCC---------------------EEEEEEEEccCCCCh--HHH
Confidence 3567789999999999998742 23678888765533 288999999999976 557
Q ss_pred ccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEeccC
Q 006508 558 AAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 558 if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
.|+++++.... ..+.|+||+++++ +.+.+++++. ++.|++|++++++..+
T Consensus 92 ~~~~~~~~~~~-~~~~GlGL~i~~~----~~~~i~~~~~-~~~Gt~~~i~~~~~~~ 141 (146)
T PRK03660 92 AMQPLYTTKPE-LERSGMGFTVMES----FMDEVEVESE-PGKGTTVRMKKYLKKS 141 (146)
T ss_pred hhCCCcccCCC-CCCccccHHHHHH----hCCeEEEEec-CCCcEEEEEEEEeccc
Confidence 78887664432 2478999998874 5678999998 5889999999998754
No 69
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=99.13 E-value=4.9e-09 Score=120.27 Aligned_cols=161 Identities=12% Similarity=0.131 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHhhcC
Q 006508 170 VHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSD 249 (642)
Q Consensus 170 ~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (642)
..|+++++.+.++.|++++|+.+++.+.+.++++.|.||+.|+++..+.+....+..........++.+++.++.+..++
T Consensus 3 ~~L~eIs~~L~s~~dL~e~L~~Iv~~~~~~l~~d~~sI~L~D~~~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~tg 82 (748)
T PRK11061 3 TRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLA 82 (748)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEeeCCChHhccceeccCCcchHHHHhccC
Confidence 46788999999999999999999999999999999999999988877665555443222222346777889999999999
Q ss_pred CceEeCCCchhhhhcc-CCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHHHHHH
Q 006508 250 GVNILGPDSELAAASS-GESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQ 328 (642)
Q Consensus 250 ~~~~l~~~~~l~~~~~-~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~~a~q 328 (642)
++..+.+-........ ....+.+.++.+++||...++. +|+|.+.+..++.|++++.+++..+|.|
T Consensus 83 ~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VPL~~~geV-------------IGVL~v~~~~~~~Fs~~d~~lL~~LA~~ 149 (748)
T PRK11061 83 EPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIYRRQL-------------LGVLVVQQRELRQFDESEESFLVTLATQ 149 (748)
T ss_pred ceEEECCcccCcccccCccccCccceEEEEEEEeeCCEE-------------EEEEEEeeCCCCCCCHHHHHHHHHHHHH
Confidence 9999965433222211 1122466889999999875554 5599999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 006508 329 VLVALSHAAVLEESQ 343 (642)
Q Consensus 329 va~al~~a~l~~e~~ 343 (642)
+|++++|++..+..+
T Consensus 150 aAiAL~na~l~~~~~ 164 (748)
T PRK11061 150 LAAILSQSQLTALFG 164 (748)
T ss_pred HHHHHHHHhhccccc
Confidence 999999998765553
No 70
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.97 E-value=3.3e-08 Score=110.78 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHhhc
Q 006508 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGS 248 (642)
Q Consensus 169 ~~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (642)
+..++++++.+..+.|++++++.+++.+.+.+++++|+|++.++++..+.... .+..........++..++.++++..+
T Consensus 4 L~~L~~is~~l~~~~dl~~lL~~il~~l~~~l~a~~~~I~L~d~~~~~l~~aa-~g~~~~~~~~~~~~~~~gi~g~v~~~ 82 (534)
T TIGR01817 4 LAALYEISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAA-IGWSEEGFAPIRYRVGEGAIGQIVAT 82 (534)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCEEEEEEECCCCCEEEEEE-eCCChhhcccccccCCccHHHHHHhc
Confidence 56788999999999999999999999999999999999999988766543322 22111111224566778889999999
Q ss_pred CCceEeCCCchhhhhc-cCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCC-CCCCChHHHHHHHHHH
Q 006508 249 DGVNILGPDSELAAAS-SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQ-FRTWSNQELEIVKVVA 326 (642)
Q Consensus 249 ~~~~~l~~~~~l~~~~-~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~-~~~~~~~e~~ll~~~a 326 (642)
+++.++.+........ .......+..+.+++||...++.. |++++.+.. .+.|+++++++++.+|
T Consensus 83 ~~pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VPL~~~g~vi-------------GvL~v~s~~~~~~ft~~d~~lL~~lA 149 (534)
T TIGR01817 83 GNSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVPIKADSETI-------------GVLAADRDFRSRERLEEEVRFLEMVA 149 (534)
T ss_pred CCeEEecccccCchhhhccccccCCcceEEEEEEcCCCEEE-------------EEEEEEeccccccccHHHHHHHHHHH
Confidence 9998886544332221 112234567899999998755554 488887764 4668999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 006508 327 DQVLVALSHAAVLE 340 (642)
Q Consensus 327 ~qva~al~~a~l~~ 340 (642)
+++|.++..++.+.
T Consensus 150 ~~ia~aI~~~~~~~ 163 (534)
T TIGR01817 150 NLIGQTVRLHRLVA 163 (534)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998777655
No 71
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=98.93 E-value=2.2e-08 Score=89.37 Aligned_cols=129 Identities=20% Similarity=0.270 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHhhcCCceEeCCCchhhhh
Q 006508 184 DRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAA 263 (642)
Q Consensus 184 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ 263 (642)
|++++++.++..+.+.+++++++||+.++++..+...+..++... ....++...+.+..+..++++.........
T Consensus 1 dl~~l~~~i~~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 75 (129)
T PF13492_consen 1 DLDELLERILELLRELLGADRAALFLLDEDGNRLRVVAGWGGDPR--LSESLPEDDPLIGRALETGEPVSVPDIDER--- 75 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-SEEEEEEEETTCECEEEEEEESS-GC--GHHCEETTSHHHHHHHHHTS-EEESTCCC----
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEEeCCCcc--ccccCCCCccHHHHHHhhCCeEEecccccc---
Confidence 678999999999999999999999999998888887777733221 223677778888899999887655432111
Q ss_pred ccCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 006508 264 SSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSH 335 (642)
Q Consensus 264 ~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~ 335 (642)
...+..+.+++|+...++.+| ++++.....+.|+++++++++.+|++++.+++|
T Consensus 76 -----~~~~~~s~~~vPl~~~~~~~G-------------vl~~~~~~~~~~~~~d~~~l~~~a~~~a~alen 129 (129)
T PF13492_consen 76 -----DFLGIRSLLVVPLRSRDRVIG-------------VLCLDSREPEEFSDEDLQLLESLANQLAIALEN 129 (129)
T ss_dssp -----TTTTTCEEEEEEEEETTEEEE-------------EEEEEECTTCG-SHHHHHHHHHHHHHHHHHHH-
T ss_pred -----cCCCCCEEEEEEEeECCEEEE-------------EEEEEECCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 114557889999998777766 777777777899999999999999999999975
No 72
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=98.92 E-value=8.6e-09 Score=95.06 Aligned_cols=137 Identities=15% Similarity=0.195 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHhhcCCceEeCCCchhhhh
Q 006508 184 DRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAA 263 (642)
Q Consensus 184 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ 263 (642)
|++++++.+++.+.+.+++++|++++.+++...+...+..............+...+...++..++++.++.+.......
T Consensus 1 Dl~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 80 (154)
T PF01590_consen 1 DLDELLQRILRELAELLGADRASIFLLDPDGNRLYSVAGVGLPDPPPGGRRLSMDESICGQVLQSREPIVISDVAADPRF 80 (154)
T ss_dssp SHHHHHHHHHHHHHHHHTESEEEEEEEETTTTEEEEEEEEEGGGSEHHHEEEETTSSHHHHHHHHTSCEEESSSGGSTTS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEecCCCeEEEEEeecccccccccccccccccHHHHHHhCCCeEeeccccccccc
Confidence 68999999999999999999999999999988876666555443322334556667788999999999997654433321
Q ss_pred ccC----------------CcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCC-CCCChHHHHHHHHHH
Q 006508 264 SSG----------------ESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQF-RTWSNQELEIVKVVA 326 (642)
Q Consensus 264 ~~~----------------~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~-~~~~~~e~~ll~~~a 326 (642)
... ...+.+.++.+++|+...++..| ++.+....+ +.|+++|+++++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~g~~~G-------------~l~l~~~~~~~~~~~~d~~ll~~~a 147 (154)
T PF01590_consen 81 APQIAAQSALRALSSAERPFLAEYGVRSYLCVPIISGGRLIG-------------VLSLYRTRPGRPFTEEDLALLESFA 147 (154)
T ss_dssp SCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEEEEETTEEEE-------------EEEEEEESSSSS--HHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCceeeEeeeecccCcEE-------------EEEEEECCCCCCcCHHHHHHHHHHH
Confidence 110 01256899999999887666554 888888777 999999999999999
Q ss_pred HHHHHHH
Q 006508 327 DQVLVAL 333 (642)
Q Consensus 327 ~qva~al 333 (642)
++++++|
T Consensus 148 ~~~a~ai 154 (154)
T PF01590_consen 148 QQLAIAI 154 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999986
No 73
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.82 E-value=6.8e-08 Score=90.29 Aligned_cols=105 Identities=8% Similarity=-0.033 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHHHHhhcccCC---CcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhc
Q 006508 482 DERRVFQVILHMVGSLLNCNSR---RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSA 558 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~---~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~i 558 (642)
+...+..++.+++.||++|... ++.|.|++...++ .+.+.|+|+|+|++++.....
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~---------------------~l~i~V~D~G~g~d~~~~~~~ 97 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYED---------------------RLEIVVADNGVSFDYETLKSK 97 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECC---------------------EEEEEEEECCcCCChHHhccc
Confidence 3456778999999999997543 4678888876543 399999999999999888888
Q ss_pred cccccccCC-CCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEeccCC
Q 006508 559 AQLGIRRIG-NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 559 f~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
|.++++... ....+.|+||+++++++.. +++.+. .|++++++-.+...+
T Consensus 98 ~~p~~~~~~~~~~~~~G~GL~li~~l~d~----v~~~~~---~G~~v~~~k~~~~~~ 147 (161)
T PRK04069 98 LGPYDISKPIEDLREGGLGLFLIETLMDD----VTVYKD---SGVTVSMTKYINREQ 147 (161)
T ss_pred cCCCCCCCcccccCCCceeHHHHHHHHHh----EEEEcC---CCcEEEEEEEcCchh
Confidence 888765332 2234679999999999986 566643 378888887665443
No 74
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.76 E-value=1.1e-06 Score=89.04 Aligned_cols=185 Identities=11% Similarity=0.101 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCcc----ceeeeeeHHHHHHHHHHHHHHHHhhcC---ceEEEEeCCCCC
Q 006508 404 QRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFP----LEIRSFRLHAMIKEAACLARCLSIYRG---FGFSIEVDRSLP 476 (642)
Q Consensus 404 ~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~----l~~~~~~L~~li~~~~~~~~~~~~~~~---i~~~~~~~~~lp 476 (642)
.+.+++....+=-.+.-++|+-+-+-....+.-+ .-...+++.++|+++.+..+..|..+= -++.++-...+.
T Consensus 173 iqyFLdr~y~sRIsiRMLv~qh~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~ 252 (414)
T KOG0787|consen 173 IQYFLDRFYMSRISIRMLVNQHLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALS 252 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCccccc
Confidence 3566777665444444456644333221111111 112468899999999999998887652 123333222222
Q ss_pred CeEEecHHHHHHHHHHHHHHhhcc----cCCCcE----EEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCC
Q 006508 477 DHVMGDERRVFQVILHMVGSLLNC----NSRRGT----VLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEG 548 (642)
Q Consensus 477 ~~v~~D~~~l~qvl~NLl~NAik~----~~~~g~----I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~ 548 (642)
.. ..-|..|..++..|+.||.++ +...+. |.|.+...++. +.|.|+|.|-
T Consensus 253 ~~-vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeD---------------------l~ikISDrGG 310 (414)
T KOG0787|consen 253 FT-VYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDED---------------------LLIKISDRGG 310 (414)
T ss_pred Cc-cccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc---------------------eEEEEecCCC
Confidence 11 234678999999999999875 333444 77776544332 7788999999
Q ss_pred CCCchhhhhccccccccCCC---------CCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEec
Q 006508 549 GSQPEVSTSAAQLGIRRIGN---------EGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 549 Gi~~~~~~~if~~f~~~~~~---------~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
||+.++++++|.-.+++... .-.|.|.||.|||...+..||++.+.|- +|-||-..+.|...
T Consensus 311 GV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~Sl-eG~GTD~yI~Lk~l 381 (414)
T KOG0787|consen 311 GVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSL-EGIGTDVYIYLKAL 381 (414)
T ss_pred CcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEee-eccccceEEEeccC
Confidence 99999999999765443321 1258999999999999999999999999 79999999988754
No 75
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=98.76 E-value=2.8e-07 Score=82.55 Aligned_cols=144 Identities=20% Similarity=0.243 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHhhhCCcEEEEEeecCC-CCeeEEEEEecCCCCCCCCCceecCChhHHHHhhcCCceEeCCCchhhh
Q 006508 184 DRHTILYTTLVELSNTLGLQNCAVWMPNEI-KTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAA 262 (642)
Q Consensus 184 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 262 (642)
|.++++..+++.+.+.+++++++|++.+++ ...+......+... ......++..++....+..++++....+......
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (149)
T smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDEDDRGELVLVAADGLTL-PLLGLRYPLGEGLAGRVAETGRPLNIPDVEADPV 79 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEEEecCCCCcEEEEEecCCCc-ccceEEecCCCChHHHHHHcCCeEEeechhhCCc
Confidence 567889999999999999999999999874 33333222222211 1223455666677888888888777754332221
Q ss_pred hccCCc-ccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 263 ASSGES-VESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNE-QFRTWSNQELEIVKVVADQVLVALSHAAVLE 340 (642)
Q Consensus 263 ~~~~~~-~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~-~~~~~~~~e~~ll~~~a~qva~al~~a~l~~ 340 (642)
...... ...+..+.+++|+...++..| ++++... ..+.|+.++.++++.++++++.++++.++.+
T Consensus 80 ~~~~~~~~~~~~~s~~~~Pl~~~~~~~G-------------~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~ 146 (149)
T smart00065 80 FALDLLGRYQGVRSFLAVPLVADGELVG-------------VLALHNKDSPRPFTEEDEELLQALANQLAIALANAQLYE 146 (149)
T ss_pred cccccccceeceeeEEEeeeeecCEEEE-------------EEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 123378999999988666555 6666666 6889999999999999999999999988655
Q ss_pred H
Q 006508 341 E 341 (642)
Q Consensus 341 e 341 (642)
+
T Consensus 147 ~ 147 (149)
T smart00065 147 E 147 (149)
T ss_pred h
Confidence 4
No 76
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.76 E-value=3.9e-07 Score=101.31 Aligned_cols=166 Identities=12% Similarity=0.077 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCCh-hHHHHhhc
Q 006508 170 VHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQ-DVVRIKGS 248 (642)
Q Consensus 170 ~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 248 (642)
..++++++.|.+++|.+++|+.++..+.+.++++.|.|.+.+++ .+......+.... .....++..++ .+..+..+
T Consensus 4 ~~l~eis~~L~~s~d~~e~L~~vl~~l~~~l~~~~~~l~l~~~~--~l~~~as~gl~~~-~~~~~~~~geGP~l~av~~~ 80 (509)
T PRK05022 4 DALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGD--QLVPLAIDGLSPD-VLGRRFALEEHPRLEAILRA 80 (509)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCC--cEEEEEEcCCChH-hhCCccCCCcchHHHHHHhc
Confidence 45889999999999999999999999999999999999988754 3333322221111 11234555554 66777777
Q ss_pred CCceEeCCCchhhhhc----cCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHH
Q 006508 249 DGVNILGPDSELAAAS----SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKV 324 (642)
Q Consensus 249 ~~~~~l~~~~~l~~~~----~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~ 324 (642)
+.++++.++...+.+. .....+.|.++.+++||...+... |+|.+....+..|++++.+++..
T Consensus 81 g~~v~v~~~~~~p~~~~~~~~~~~~~~gi~S~l~vPL~~~~~~~-------------GvL~l~~~~~~~f~~~~~~~l~~ 147 (509)
T PRK05022 81 GDPVRFPADSELPDPYDGLIPGVQESLPVHDCMGLPLFVDGRLI-------------GALTLDALDPGQFDAFSDEELRA 147 (509)
T ss_pred CCeEEEecCCCCCcccccccccccccCCcceEEEEEEEECCEEE-------------EEEEEeeCCCCcCCHHHHHHHHH
Confidence 7777776554332211 111234577899999998866554 48888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 325 VADQVLVALSHAAVLEESQHMREKLEE 351 (642)
Q Consensus 325 ~a~qva~al~~a~l~~e~~~~~~~l~~ 351 (642)
+|.+++.|+.++..+++.++..++++.
T Consensus 148 ~a~~~a~Al~~a~~~~~l~~~~~~~~~ 174 (509)
T PRK05022 148 LAALAAATLRNALLIEQLESQAELPQD 174 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988777665555444
No 77
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.68 E-value=7.5e-07 Score=102.78 Aligned_cols=171 Identities=12% Similarity=0.013 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCC-CCCCCCceecCChhHHHHhh
Q 006508 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRN-YSDMCSSIPITDQDVVRIKG 247 (642)
Q Consensus 169 ~~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 247 (642)
...|.++|+.+.+..|+++++..+...+.+.+.++++.|.++|+....+.+ +...... +..........++..+.+.+
T Consensus 8 ~~~l~~is~~~~~~~~~~~l~~~l~~~~~~~~~ad~~~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~g~vl~ 86 (686)
T PRK15429 8 QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASY-YASREKGTPVKYEDETVLAHGPVRRILS 86 (686)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccceEEEEEEcCCCCeeee-eeccccccchhccchhhhccCcceEEee
Confidence 345788999999999999999999999999999999999999988766654 2222111 11111122344566677888
Q ss_pred cCCceEeCCCchhhh----hccCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHH
Q 006508 248 SDGVNILGPDSELAA----ASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVK 323 (642)
Q Consensus 248 ~~~~~~l~~~~~l~~----~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~ 323 (642)
++++.+.+....... .....+ .+..+++.+||...+...| ++++.......|+++|.+++.
T Consensus 87 ~~~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~lgvPl~~~~~v~G-------------~l~l~~~~~~~Ft~~d~~ll~ 151 (686)
T PRK15429 87 RPDTLHCSYEEFCETWPQLAAGGLY--PKFGHYCLMPLAAEGHIFG-------------GCEFIRYDDRPWSEKEFNRLQ 151 (686)
T ss_pred cCceEEEchHHhhhccHHHhhcccc--cCccceEEeceeeCCeeEE-------------EEEEEEcCCCCCCHHHHHHHH
Confidence 888887754332221 111111 3344577788887666655 888877778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 324 VVADQVLVALSHAAVLEESQHMREKLEEQNRA 355 (642)
Q Consensus 324 ~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~ 355 (642)
.+|.++++|++|++++++.++..+.|+++..+
T Consensus 152 ~la~~a~~aie~~~~~e~~~~~~~~L~~~r~~ 183 (686)
T PRK15429 152 TFTQIVSVVTEQIQSRVVNNVDYELLCRERDN 183 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999888877777554443
No 78
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=98.66 E-value=2.9e-07 Score=84.15 Aligned_cols=137 Identities=17% Similarity=0.220 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCC--hhH-------HHHhhcCCceE
Q 006508 183 LDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITD--QDV-------VRIKGSDGVNI 253 (642)
Q Consensus 183 ~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~ 253 (642)
.|.+++++.+++.+.+.++++.++||+.|+++......+..............+... ... ..+..++++..
T Consensus 2 ~~~~ell~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PF13185_consen 2 EDLEELLQQILDALLELTGADAGAIYLYDPDGQLLPVAASGDPSEFLKEEIPLPPPPDEPPAYAAVGLWEGVLRTGEPII 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SEEEEEEEETTSEEEEEEEESSSCTSTCCECCCCCCCESCHHHCCEETTSHHHHHTS-EE
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCcEEEEEEeCCchhhhhhhcccCcccccccchhhhhHHHHHHhcCceEE
Confidence 467899999999999999999999999988763333333322221111111111111 111 11277788887
Q ss_pred eC-CCchhhhhccCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHHHHHHHHHH
Q 006508 254 LG-PDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVA 332 (642)
Q Consensus 254 l~-~~~~l~~~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~~a~qva~a 332 (642)
+. ++..... .......+..+.+++||...+++.| ++.+.+..+..|+++++++++.+|++++.+
T Consensus 82 ~~~~~~~~~~--~~~~~~~~~~s~l~vPl~~~~~~~G-------------vl~l~~~~~~~f~~~~~~~l~~la~~~a~a 146 (148)
T PF13185_consen 82 INDDDSSFPP--WELARHPGIRSILCVPLRSGGEVIG-------------VLSLYSKEPNAFSEEDLELLEALADQIAIA 146 (148)
T ss_dssp ESCCCGGGST--THHHCCTT-SEEEEEEEEETTEEEE-------------EEEEEESSTT---HHHHHHHHHHHHHHHHH
T ss_pred EeCccccccc--hhhhccccCCEEEEEEEeECCEEEE-------------EEEEeeCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 77 2222111 2233457899999999998777655 888888888999999999999999999999
Q ss_pred HH
Q 006508 333 LS 334 (642)
Q Consensus 333 l~ 334 (642)
|+
T Consensus 147 ie 148 (148)
T PF13185_consen 147 IE 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 84
No 79
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.65 E-value=3.2e-07 Score=85.43 Aligned_cols=104 Identities=3% Similarity=-0.046 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhhcccC---CCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccc
Q 006508 484 RRVFQVILHMVGSLLNCNS---RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQ 560 (642)
Q Consensus 484 ~~l~qvl~NLl~NAik~~~---~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~ 560 (642)
..+..++.+++.||++|.. +++.|.|.+...++. +.+.|+|+|+|++++.+.+.|.
T Consensus 41 ~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~---------------------l~i~V~D~G~gfd~~~~~~~~~ 99 (159)
T TIGR01924 41 EDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDR---------------------LEIIVSDQGDSFDMDTFKQSLG 99 (159)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCE---------------------EEEEEEEcccccCchhhccccC
Confidence 3477789999999999853 347888888766432 8899999999999988887776
Q ss_pred cccccCC-CCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEeccCCC
Q 006508 561 LGIRRIG-NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPS 615 (642)
Q Consensus 561 ~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~~ 615 (642)
++..... ....+.|+||+++|++++ .+.+.+. .|++++++..+...+.
T Consensus 100 ~~~~~~~~~~~~~~G~GL~Li~~L~D----~v~~~~~---~G~~l~l~k~~~~~~~ 148 (159)
T TIGR01924 100 PYDGSEPIDDLREGGLGLFLIETLMD----EVEVYED---SGVTVAMTKYLNREQV 148 (159)
T ss_pred CCCCCCCcccCCCCccCHHHHHHhcc----EEEEEeC---CCEEEEEEEEEccccc
Confidence 6544322 123467999999999988 5667654 3678888766664443
No 80
>PF14501 HATPase_c_5: GHKL domain
Probab=98.64 E-value=4.2e-07 Score=77.71 Aligned_cols=96 Identities=10% Similarity=0.215 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHHHhhcccCC---CcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhc
Q 006508 482 DERRVFQVILHMVGSLLNCNSR---RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSA 558 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~---~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~i 558 (642)
|+..+-.+|.||++||+++... ...|.|.+...++ ++.|.|+..-.+ ..+.+
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~---------------------~~~i~i~N~~~~----~~~~~ 56 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREENG---------------------FLVIIIENSCEK----EIEKL 56 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC---------------------EEEEEEEECCCC----ccccc
Confidence 4566788999999999997433 5678888776643 378888887544 11222
Q ss_pred cccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEE
Q 006508 559 AQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLR 609 (642)
Q Consensus 559 f~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP 609 (642)
+ . ....+.+.|+||..+++++++++|++.++.. .+ =.++++.||
T Consensus 57 ~----~-~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~-~~-~f~~~i~ip 100 (100)
T PF14501_consen 57 E----S-SSSKKKGHGIGLKNVKKILEKYNGSLSIESE-DG-IFTVKIVIP 100 (100)
T ss_pred c----c-cccCCCCCCcCHHHHHHHHHHCCCEEEEEEE-CC-EEEEEEEEC
Confidence 2 1 1223458999999999999999999999887 33 345555555
No 81
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=98.56 E-value=1.1e-05 Score=85.96 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=120.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHhhcCCc
Q 006508 172 VRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGV 251 (642)
Q Consensus 172 l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (642)
|+++-+.+.+..++.+-|..++++++..+.++.|.||+.+.++..+.+-..-+-.........+..+++.++.+.++.++
T Consensus 5 Lr~i~E~va~~~~~qe~Ld~iVr~i~~aM~tEVCSvYl~~~d~~~leL~ATeGLnk~av~~~~l~~~eGLVG~v~~~aeP 84 (756)
T COG3605 5 LRRIVEKVASALELQEALDIIVRDIALAMVTEVCSVYLLRADRRVLELMATEGLNKPAVHLVQLAFGEGLVGLVGRSAEP 84 (756)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhhhhheeEEEEcCCCcEEEEEeccccCccccceEEecCCCchhhhhhhccCC
Confidence 67777888899999999999999999999999999999999987766655444333333445677789999999999999
Q ss_pred eEeCCCchhh-hhccCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHHHHHHHH
Q 006508 252 NILGPDSELA-AASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVL 330 (642)
Q Consensus 252 ~~l~~~~~l~-~~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~~a~qva 330 (642)
.-+.+.+.-+ ........+--..+.+.+|+++..+. +|||++.++..|.|.++|.+++..+|.|+|
T Consensus 85 lNLsdAqsHPsF~Y~petgEE~Y~sFLGvPIi~~~r~-------------lGVLVVQqk~~R~y~E~Eve~L~T~A~~lA 151 (756)
T COG3605 85 LNLADAQSHPSFKYLPETGEERYHSFLGVPIIRRGRL-------------LGVLVVQQRELRQYDEDEVEFLVTLAMQLA 151 (756)
T ss_pred CChhhhhhCCccccccccchHHHHHhhccceeecCce-------------eEEEEEecccccccchHHHHHHHHHHHHHH
Confidence 8885543321 11112222333567788888876555 559999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 006508 331 VALSHAAVL 339 (642)
Q Consensus 331 ~al~~a~l~ 339 (642)
..+.++++.
T Consensus 152 ~iva~~el~ 160 (756)
T COG3605 152 EIVAQSQLT 160 (756)
T ss_pred HHHHhhhhh
Confidence 999988654
No 82
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.51 E-value=7.1e-07 Score=92.29 Aligned_cols=134 Identities=10% Similarity=0.096 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHhhcccCCCc---EEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhcc
Q 006508 483 ERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAA 559 (642)
Q Consensus 483 ~~~l~qvl~NLl~NAik~~~~~g---~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if 559 (642)
...|.|++..|++|+++++...| .|.|.++..+ ..++++.|+|||+|||++.+.++|
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~--------------------~d~y~v~veDNGpGIP~e~IPkvF 93 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIG--------------------KDHYKVIVEDNGPGIPEEQIPKVF 93 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecC--------------------CceEEEEEecCCCCCChhHhHHHH
Confidence 46699999999999999766554 4666665553 335899999999999999999999
Q ss_pred ccccc--cC----CCCCCCCcchHHHHHHHHHHcCCE-EEEEecCCCCcEEEEEEEEeccCCCCCCCCCCCCCCCCCcCC
Q 006508 560 QLGIR--RI----GNEGIEDRMSFSVCKKLVQLMQGN-IWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLEN 632 (642)
Q Consensus 560 ~~f~~--~~----~~~~~G~GLGL~i~k~iv~~~gG~-I~v~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~ 632 (642)
..+.- ++ .+. +-.|+|.+-|--..++.-|+ +.|.|...+.++.+.+.|-.......|.--. .....+..+
T Consensus 94 Gk~LygSKfh~~~QsR-GqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~--r~~~~~~~~ 170 (538)
T COG1389 94 GKMLYGSKFHRNIQSR-GQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVE--RGEVENPGG 170 (538)
T ss_pred HHHhccchhhhhhhcc-ccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhh--cccccCCCC
Confidence 76321 11 222 24799999998888988885 8888775556888888888876655433211 223455667
Q ss_pred CCCcccc
Q 006508 633 LRSTHIP 639 (642)
Q Consensus 633 ~~~~~il 639 (642)
++|++|=
T Consensus 171 ~hGT~Ve 177 (538)
T COG1389 171 WHGTRVE 177 (538)
T ss_pred CCceEEE
Confidence 8888874
No 83
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.48 E-value=5.2e-07 Score=69.77 Aligned_cols=64 Identities=31% Similarity=0.576 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCC
Q 006508 370 RNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDS 433 (642)
Q Consensus 370 ~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~ 433 (642)
+.+|.+.++||+||||++|.++++.+.+...+++..++++.+.+.++++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3568899999999999999999999887666666688999999999999999999999987643
No 84
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.23 E-value=4.7e-05 Score=80.55 Aligned_cols=179 Identities=18% Similarity=0.149 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHhhc
Q 006508 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGS 248 (642)
Q Consensus 169 ~~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (642)
.+.+++++..+....+.+..+..+.+.+.+.+|++.+++..++.+.-....+..+..+.............+.+.+++..
T Consensus 33 ~~~l~el~~~l~~~~~~e~ll~~v~~~l~~~~~~~~~~ll~~d~~~l~~~~~~gl~~~~~~~~~~~~~~~~~~l~~i~~~ 112 (550)
T COG3604 33 IRILVELTNALLSPLRLERLLAEVAKELHSLFGCDASALLRLDSKNLIPLATDGLSKDHLGREQRFVVEGHPLLEQILKA 112 (550)
T ss_pred hHHHHHhhhhhcCchhHHHHHHHHHHHHHHHhcCCeeEEEEecccccchhhhhcccccccccccccccCcchHHHHHHhC
Confidence 45688899999999999999999999999999999999998887752222222222221111112344557889999999
Q ss_pred CCceEe-CCCchhhhhccCCcc---cCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHH
Q 006508 249 DGVNIL-GPDSELAAASSGESV---ESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKV 324 (642)
Q Consensus 249 ~~~~~l-~~~~~l~~~~~~~~~---~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~ 324 (642)
+.+.++ ..++.+..+...... ..+..+.+.+|+..+.+..| +|.+....+..|+..-.+.++.
T Consensus 113 ~~p~~~~~~d~~~~~~~~~l~~~~~~~~~~a~i~~PL~~~~~~~G-------------~Ltld~~~~~~f~~~~~~~lr~ 179 (550)
T COG3604 113 GRPLVFHPADSLFPDPYDGLLPDTEGNKKHACIGVPLKSGDKLIG-------------ALTLDHTEPDQFDEDLDEELRF 179 (550)
T ss_pred CCcEEEecCCcccCCcccccccCccCCcceeEEeeeeeeCCeeee-------------eEEeeeecccccchhHHHHHHH
Confidence 999998 667666644433221 12358999999998877766 7788777777888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 325 VADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQ 360 (642)
Q Consensus 325 ~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~a~ 360 (642)
++..++.+..++.+.++.+..++.+++++.+++...
T Consensus 180 La~~a~la~~~~~l~~~l~~~~~~l~~e~~~~~~~~ 215 (550)
T COG3604 180 LAALAALAVANALLHRELSSLKERLEEENLALEEQL 215 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 999999999999999998888888877666555443
No 85
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.18 E-value=1.5e-05 Score=71.03 Aligned_cols=92 Identities=12% Similarity=0.077 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhhcccCCC---cEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccc
Q 006508 484 RRVFQVILHMVGSLLNCNSRR---GTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQ 560 (642)
Q Consensus 484 ~~l~qvl~NLl~NAik~~~~~---g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~ 560 (642)
..+.-++..++.||++|...+ +.|.|.+...++. +.+.|.|+|+|+++........
T Consensus 30 ~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~---------------------l~i~v~D~G~~~d~~~~~~~~~ 88 (125)
T PF13581_consen 30 DDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDR---------------------LRISVRDNGPGFDPEQLPQPDP 88 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCE---------------------EEEEEEECCCCCChhhccCccc
Confidence 467789999999999985543 6777777665443 9999999999988876544321
Q ss_pred cccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEE
Q 006508 561 LGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 561 ~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
.-. ......|+||.++++++... .+ +. +.|++++++
T Consensus 89 ~~~----~~~~~~G~Gl~li~~l~D~~----~~-~~--~~gn~v~l~ 124 (125)
T PF13581_consen 89 WEP----DSLREGGRGLFLIRSLMDEV----DY-RE--DGGNTVTLR 124 (125)
T ss_pred ccC----CCCCCCCcCHHHHHHHHcEE----EE-EC--CCeEEEEEE
Confidence 111 22237799999999999875 34 33 568988875
No 86
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.09 E-value=1.8e-05 Score=60.51 Aligned_cols=62 Identities=27% Similarity=0.450 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMDNSP 430 (642)
Q Consensus 369 ~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~ 430 (642)
.+.++.+.++||+|||++++.++++.+++.. ..++...+++.+.+.++++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999999988643 3566678899999999999999999998864
No 87
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=97.98 E-value=1.1e-05 Score=74.66 Aligned_cols=159 Identities=18% Similarity=0.239 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCC-eeE-EEEEecC---CCCCCCCCceecCChhHHH
Q 006508 170 VHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKT-EMN-LTHQLNG---RNYSDMCSSIPITDQDVVR 244 (642)
Q Consensus 170 ~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~-~l~-~~~~~~~---~~~~~~~~~~~~~~~~~~~ 244 (642)
..++++++.+..+.+.+++++.+++.+.+.++++++.++..+.+.. ... +.+.... ..........+........
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T COG2203 4 ALLNELAAKIAQDLDLEEILQAALELLAELLGADRGLIYLLDEDGLLDGALVAEAAEAGLEQLIDELFGLVILPACLIGI 83 (175)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccHHhhheeccccccchHHHHHHhcchhhhhHHHHhcccCcchhhhhh
Confidence 3466788889999999999999999999999999999999887752 100 0000000 0000000000111122334
Q ss_pred HhhcCCceEeCCCchhhhhccCCcccCC--ceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCC-CCChHHHHH
Q 006508 245 IKGSDGVNILGPDSELAAASSGESVESG--PVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFR-TWSNQELEI 321 (642)
Q Consensus 245 ~~~~~~~~~l~~~~~l~~~~~~~~~~~g--~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~-~~~~~e~~l 321 (642)
+...+...+..+................ ..+.+++|+...++..| ++++...... .|+++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~vPl~~~~~~~G-------------~l~~~~~~~~~~~~~~e~~l 150 (175)
T COG2203 84 ALREGRPVVVEDILQDPRFRDNPLVLLEPPIRSYLGVPLIAQGELLG-------------LLCVHDSEPRRQWSEEELEL 150 (175)
T ss_pred hhcCCceEEeeccccCcccccCHHHHHHHHHHHheeeeeeECCEeeE-------------EeeeeccCCCCCCCHHHHHH
Confidence 4445555555332222211111111111 57889999998776655 7777777665 699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006508 322 VKVVADQVLVALSHAAVLEE 341 (642)
Q Consensus 322 l~~~a~qva~al~~a~l~~e 341 (642)
++.+|++++.++++++++++
T Consensus 151 l~~la~~~a~ai~~~~~~~~ 170 (175)
T COG2203 151 LEELAEQVAIAIERARLYEE 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988766
No 88
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=0.00011 Score=76.59 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhcccccc
Q 006508 484 RRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGI 563 (642)
Q Consensus 484 ~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~ 563 (642)
..+.+++.||++||+++. ...|.|.+...+ ...+.|.|||.||++++++++|++|+
T Consensus 21 ~~~~~~l~eLi~Na~dA~--a~~I~i~~~~~~----------------------~~~i~V~DnG~Gi~~~~l~~~~~~~~ 76 (312)
T TIGR00585 21 ERPASVVKELVENSLDAG--ATRIDVEIEEGG----------------------LKLIEVSDNGSGIDKEDLPLACERHA 76 (312)
T ss_pred hhHHHHHHHHHHHHHHCC--CCEEEEEEEeCC----------------------EEEEEEEecCCCCCHHHHHHHhhCCC
Confidence 347789999999999963 356777764321 14699999999999999999999988
Q ss_pred ccCCCC---------CCCCcchHHHHHHHHHHcCCEEEEEecC-CCCcEEEEEE
Q 006508 564 RRIGNE---------GIEDRMSFSVCKKLVQLMQGNIWMVPSS-HGFAQSMGLV 607 (642)
Q Consensus 564 ~~~~~~---------~~G~GLGL~i~k~iv~~~gG~I~v~s~~-~g~Gt~f~i~ 607 (642)
+.+... .+-.|.||+-...+ +++.+.|.. .+.+..+.+.
T Consensus 77 tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 77 TSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred cCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEEE
Confidence 754321 12246777643322 367887762 2334444443
No 89
>PRK13558 bacterio-opsin activator; Provisional
Probab=97.81 E-value=0.0012 Score=76.58 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceec-CChhHHHHhhc-
Q 006508 171 HVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPI-TDQDVVRIKGS- 248 (642)
Q Consensus 171 ~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 248 (642)
.++.+++.+....+.+++.+.+.+.+.+..+.+.++|+.++++...+......+..... ....+.. ..........+
T Consensus 289 ll~~v~~~l~~~~~~~~l~~~v~~~l~~~~~~~~awi~~~d~~~~~l~~~~~~g~~~~~-~~~~~~~~~~~p~~~a~~~~ 367 (665)
T PRK13558 289 LVNDVTSALVRATDREEIEAAVCDRVGAGGEYDGAWIGEYDPTSGTITVAEAAGGCDGA-DGDVLDLAAAGPAAAALQSV 367 (665)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhccCcceEEEeeecCCCCeEeeeecccCCccc-ccccccccccCchHHHHHhc
Confidence 35667888888899999999999999999999999999998877666443322221110 1111111 11122333333
Q ss_pred -CCceEeCCCchhhhhccCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHHHHH
Q 006508 249 -DGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVAD 327 (642)
Q Consensus 249 -~~~~~l~~~~~l~~~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~~a~ 327 (642)
+....+.......... .....+.+++||...++.+| +|.+....++.|+++++++++.+|.
T Consensus 368 ~~~~~~~~~~~~~~~~~-----~~~~~s~~~vPL~~~g~~~G-------------vL~v~~~~~~~f~~~e~~ll~~la~ 429 (665)
T PRK13558 368 VAETEAVESTDVDGVSG-----TVDGSAVAAVPLVYRETTYG-------------VLVVYTAEPDEIDDRERVVLEALGR 429 (665)
T ss_pred cCceEEecCCCcccccc-----ccCCceEEEEeEEECCEEEE-------------EEEEeeCCCCCCCHHHHHHHHHHHH
Confidence 3333332221111000 01112899999998777766 8888888899999999999999999
Q ss_pred HHHHHHHHHH
Q 006508 328 QVLVALSHAA 337 (642)
Q Consensus 328 qva~al~~a~ 337 (642)
+++.+|.+.+
T Consensus 430 ~ia~aI~~~~ 439 (665)
T PRK13558 430 AVGAAINALE 439 (665)
T ss_pred HHHHHHHHHH
Confidence 9999995544
No 90
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.55 E-value=0.001 Score=60.76 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=61.2
Q ss_pred EecHHHHHHHHHHHHHHhhcccC----CCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhh
Q 006508 480 MGDERRVFQVILHMVGSLLNCNS----RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVS 555 (642)
Q Consensus 480 ~~D~~~l~qvl~NLl~NAik~~~----~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~ 555 (642)
..|-.++.-++..++.|+++|.- +.|.|.|.+...++. +++.|.|.|+|+. ..
T Consensus 35 ~~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~---------------------~~i~i~D~G~~~~--~~ 91 (146)
T COG2172 35 YVDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGK---------------------LEIRIWDQGPGIE--DL 91 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCe---------------------EEEEEEeCCCCCC--CH
Confidence 34556788888888899888732 248899999877654 9999999997754 33
Q ss_pred hhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEec
Q 006508 556 TSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPS 596 (642)
Q Consensus 556 ~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~ 596 (642)
+..+.+.+.... ....-|+||.++++++. ++.+++.
T Consensus 92 ~~~~~~~~~~~~-~~~~~G~Gl~l~~~~~D----~~~~~~~ 127 (146)
T COG2172 92 EESLGPGDTTAE-GLQEGGLGLFLAKRLMD----EFSYERS 127 (146)
T ss_pred HHhcCCCCCCCc-ccccccccHHHHhhhhe----eEEEEec
Confidence 444444432222 11245899999998774 5678855
No 91
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.076 Score=48.05 Aligned_cols=193 Identities=11% Similarity=0.032 Sum_probs=114.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHH
Q 006508 372 AFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKE 451 (642)
Q Consensus 372 ~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~ 451 (642)
-+.+.+.||+-.|..+|..-+++|.+...++ +.++-|..++...+ ..|.|+|+.-|...-.-..+|-.+.-+
T Consensus 17 lLcsRvCHDiISPvgAInnGLeLLdeg~add---DAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeaek- 88 (214)
T COG5385 17 LLCSRVCHDIISPVGAINNGLELLDEGGADD---DAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAEK- 88 (214)
T ss_pred HHHHHHHhhccCcHHHhhchhhhhccCCccH---HHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHHH-
Confidence 3567789999999999999999998866554 44566666665554 356677765544333323455444322
Q ss_pred HHHHHHHHHhhcCceEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccc
Q 006508 452 AACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQS 531 (642)
Q Consensus 452 ~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~ 531 (642)
..+..+...+-+++.+.+. ......+. ..+.||+-=|.-+-|.||.+.+++...+..
T Consensus 89 ---~A~~~~a~ekpe~~W~g~r-----~~~~Kn~v-kllLNl~lia~~aiPrGG~~~vtle~~e~d-------------- 145 (214)
T COG5385 89 ---AAQDFFANEKPELTWNGPR-----AILPKNRV-KLLLNLFLIAYGAIPRGGSLVVTLENPETD-------------- 145 (214)
T ss_pred ---HHHHHHhccCCcccccCCh-----hhcCcchH-HHHHHHHHHHcccCCCCCeeEEEeecCCcC--------------
Confidence 2333333333455554432 22223333 367888888877788999998888644322
Q ss_pred cCCCceEEEEEEEECCCC--CCchhhhhcccc-ccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEE
Q 006508 532 SVDGDVYIRFEILLNEGG--SQPEVSTSAAQL-GIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 532 ~~~~~~~v~i~V~D~G~G--i~~~~~~~if~~-f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
-+|+|.-.|+- .||+.++-.-.. ....- .+...-=+-.--+++.-|++|.++.. +.-..|+-..
T Consensus 146 -------~rfsi~akG~m~Rvppk~lel~~G~~~eE~v----dahsVQpyYt~lLa~eAgm~I~v~~~--~e~iv~~A~v 212 (214)
T COG5385 146 -------ARFSIIAKGRMMRVPPKFLELHSGEPPEEAV----DAHSVQPYYTLLLAEEAGMTISVHAT--AERIVFTAWV 212 (214)
T ss_pred -------ceEEEEecCccccCCHHHHhhhcCCCccccC----CCccccHHHHHHHHHHcCCeEEEEec--cceEEEEEec
Confidence 45777777764 356555432110 00000 02222334556678899999999987 3345565544
No 92
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=96.87 E-value=0.00055 Score=62.08 Aligned_cols=99 Identities=7% Similarity=0.056 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccC
Q 006508 487 FQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRI 566 (642)
Q Consensus 487 ~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~ 566 (642)
.++|..||.||+.+. ...|.|.+...+... -.|.|.|||.||+++.+...|.......
T Consensus 4 ~~al~ElI~Ns~DA~--a~~I~I~i~~~~~~~--------------------~~i~I~DnG~Gm~~~~l~~~~~~g~s~k 61 (137)
T PF13589_consen 4 EDALRELIDNSIDAG--ATNIKISIDEDKKGE--------------------RYIVIEDNGEGMSREDLESFFRIGRSSK 61 (137)
T ss_dssp THHHHHHHHHHHHHH--HHHEEEEEEEETTTT--------------------TEEEEEESSS---HHHHHHHTTCHHTHH
T ss_pred HHHHHHHHHHHHHcc--CCEEEEEEEcCCCCC--------------------cEEEEEECCcCCCHHHHHHhccccCCCC
Confidence 468889999999853 334777776653110 4589999999999999999776543322
Q ss_pred C-----CCCCCCcch--HHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEecc
Q 006508 567 G-----NEGIEDRMS--FSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQL 612 (642)
Q Consensus 567 ~-----~~~~G~GLG--L~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~ 612 (642)
. ..-+..|+| +++. .++.++.+.|...+....+++..+.-.
T Consensus 62 ~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~~~~ 109 (137)
T PF13589_consen 62 KSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYDWIE 109 (137)
T ss_dssp HHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEEEET
T ss_pred CchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEeccc
Confidence 1 111235666 3332 467889999986666677887777543
No 93
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.77 E-value=0.0067 Score=69.01 Aligned_cols=84 Identities=11% Similarity=0.055 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccc
Q 006508 485 RVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIR 564 (642)
Q Consensus 485 ~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~ 564 (642)
+...|+.+||+||+++ ....|.|.+... + ...|+|.|||.||++++++..|.++.+
T Consensus 22 ~~~svvkElveNsiDA--gat~I~v~i~~~-g---------------------~~~i~V~DnG~Gi~~~~~~~~~~~~~t 77 (617)
T PRK00095 22 RPASVVKELVENALDA--GATRIDIEIEEG-G---------------------LKLIRVRDNGCGISKEDLALALARHAT 77 (617)
T ss_pred CHHHHHHHHHHHHHhC--CCCEEEEEEEeC-C---------------------eEEEEEEEcCCCCCHHHHHHHhhccCC
Confidence 3567999999999995 366788877422 1 156999999999999999998887654
Q ss_pred cCCCC--------CCC-CcchHHHHHHHHHHcCCEEEEEecC
Q 006508 565 RIGNE--------GIE-DRMSFSVCKKLVQLMQGNIWMVPSS 597 (642)
Q Consensus 565 ~~~~~--------~~G-~GLGL~i~k~iv~~~gG~I~v~s~~ 597 (642)
.+-.. .-| .|.||+-.-.+ .++.+.+..
T Consensus 78 sKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 78 SKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred CCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 33211 112 45666633332 467887764
No 94
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=96.48 E-value=0.41 Score=45.21 Aligned_cols=152 Identities=12% Similarity=0.138 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEee------c-CCCCeeEEEEEecCCCCCC
Q 006508 158 EVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMP------N-EIKTEMNLTHQLNGRNYSD 230 (642)
Q Consensus 158 e~~~~~~~~~~~~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~------~-~~~~~l~~~~~~~~~~~~~ 230 (642)
++..+.+..+-++.+-+-+..|-+..+.++....++.++...++.+...++.. + .+...+.+...-+.-.. .
T Consensus 10 di~~Ie~~R~GLe~Ii~as~~L~~~~sl~~fa~gvL~Ql~~Ll~~~~~~l~~~~~~~~~~~~~~~~~~VlaatG~f~~-~ 88 (174)
T PF11849_consen 10 DIRTIERNRQGLEKIIEASASLFQIRSLQEFASGVLTQLSALLGLEDDGLYCSVRSAFPDDSDDNEFRVLAATGRFES-L 88 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCCCeEEEecccccCCCCCCCCEEEEEEeccchh-h
Confidence 34444555556677777888888999999999999999999999988777661 1 11112322222211110 0
Q ss_pred CCCce-ecCCh----hHHHHhhcCCceEeCCCchhhhhccCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEE
Q 006508 231 MCSSI-PITDQ----DVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLV 305 (642)
Q Consensus 231 ~~~~~-~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~ 305 (642)
.+..+ ...++ .+.++..+++...-+ ....+++|-.. +. -.+++
T Consensus 89 ~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~-----------------~~~~ly~~~~~--g~-------------~~~iy 136 (174)
T PF11849_consen 89 IGQPLDDLLPPEIRAALQQALSSKRSIFEE-----------------DHFVLYFPSSS--GR-------------ESLIY 136 (174)
T ss_pred cCCcccccCCHHHHHHHHHHHHcCCeEecC-----------------CeEEEEEecCC--CC-------------EEEEE
Confidence 11111 11122 233444443322211 12334444221 11 12445
Q ss_pred eeCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 306 LPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQH 344 (642)
Q Consensus 306 l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~ 344 (642)
+.. .+.+++.+.++++.++..++++++|..+++++++
T Consensus 137 l~~--~~~l~~~d~~LlevF~~Nvs~afdNv~L~~~l~~ 173 (174)
T PF11849_consen 137 LEG--DRPLSETDRQLLEVFCNNVSIAFDNVSLNEELEE 173 (174)
T ss_pred EeC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 544 4789999999999999999999999999887653
No 95
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=96.03 E-value=0.93 Score=43.01 Aligned_cols=170 Identities=13% Similarity=0.113 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCc
Q 006508 386 HSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGF 465 (642)
Q Consensus 386 ~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i 465 (642)
.+|...+++|.++..+ +.+..++-|.+++.....-++ |.|+--|...- -..++..++- +.++......++
T Consensus 2 GAI~NGLELL~~~~~~-~~~~~~~LI~~Sa~~A~aRl~----F~RlAFGaag~-~~~i~~~e~~----~~~~~~~~~~r~ 71 (182)
T PF10090_consen 2 GAINNGLELLDDEGDP-EMRPAMELIRESARNASARLR----FFRLAFGAAGS-GQQIDLGEAR----SVLRGYFAGGRI 71 (182)
T ss_pred cchhhhHHHHcCCCCc-cchHHHHHHHHHHHHHHHHHH----HHHHHcCCCCC-CCCCCHHHHH----HHHHHHHhCCce
Confidence 3577788888765442 333377788888777665543 33433333222 2456655543 333444455566
Q ss_pred eEEEEeCCC-CCCeEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEE
Q 006508 466 GFSIEVDRS-LPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEIL 544 (642)
Q Consensus 466 ~~~~~~~~~-lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~ 544 (642)
++..+++.+ +| ...-+++.|++-=+..+.|.||.|+|.+....+. ..+.|.
T Consensus 72 ~l~W~~~~~~~~-------k~~vklllnl~l~a~~alprGG~i~V~~~~~~~~---------------------~~~~v~ 123 (182)
T PF10090_consen 72 TLDWQVERDLLP-------KPEVKLLLNLLLCAEDALPRGGEITVSIEGSEGD---------------------GGWRVR 123 (182)
T ss_pred EEEccCccccCC-------HHHHHHHHHHHHHHHhhcCCCCEEEEEEeccCCC---------------------ceEEEE
Confidence 777665554 22 2334799999999988899999999987655443 456677
Q ss_pred ECCCCC--CchhhhhccccccccCCCCCCCCcchHHHHHHHHHHcCCEEEEEec
Q 006508 545 LNEGGS--QPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPS 596 (642)
Q Consensus 545 D~G~Gi--~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~ 596 (642)
=+|+.+ +++...-+-..-.. ..-.....=.+....+++..|++|.++..
T Consensus 124 a~G~~~~~~~~~~~~L~g~~~~---~~l~~~~VQ~~~~~~la~~~G~~l~~~~~ 174 (182)
T PF10090_consen 124 AEGPRARLDPDLWAALAGEDPE---EDLDPRNVQFYLLPLLAREAGRRLSVEAT 174 (182)
T ss_pred EeccccCCCHHHHHHhcCCCCC---CCCCHHhHHHHHHHHHHHHcCCeEEEEec
Confidence 777654 44433332211100 00012234467888899999999999876
No 96
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=95.97 E-value=0.21 Score=49.36 Aligned_cols=163 Identities=11% Similarity=0.071 Sum_probs=91.2
Q ss_pred HHHHHHHHHhHHHHHHHHH----HHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEE
Q 006508 147 MLKKKAWDLGREVGIIMKQ----KEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQ 222 (642)
Q Consensus 147 ~l~~~~~~l~~e~~~~~~~----~~~~~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~ 222 (642)
.+|+++++|+++...+... +.....+..++.++-++.+.++++......+.+.|+++.+.+++.++...... .
T Consensus 51 ~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~~~v~L~L~~~~~~~~~---~ 127 (225)
T PF04340_consen 51 RLRERNRQLEEQLEELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDVDAVRLRLFDDDAAPGP---S 127 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--SEEEEEEE-SS---SE---E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCeEEEEeecccccccc---c
Confidence 3555667777766655444 44455678888899999999999999999999999999999998876532100 0
Q ss_pred ecCCCCCCCCCceecCChhHHHH----hhcCCceEeCCCchhhhhccCCcccCCceeEEEeeeeecccccCCcchhhhcc
Q 006508 223 LNGRNYSDMCSSIPITDQDVVRI----KGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSAC 298 (642)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~l~~~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~ 298 (642)
. . ............+ +..+.+.+-....... ....+.......+...+|+. .+..
T Consensus 128 ~-~-------~~~~~~~~~~~~~~~~~l~~~~p~~G~~~~~~~-~~lF~~~~~~v~S~AlipL~-~~~~----------- 186 (225)
T PF04340_consen 128 L-T-------DHVWLSRDAFAQVFIDLLGLQQPYCGRLSEEEA-ALLFGDEAAQVGSVALIPLG-SGRP----------- 186 (225)
T ss_dssp --------------E-HHHHHHHHCCCHTT---CCCS--HHHH-HHHHHHCHCC-SEEEEEEEE-SSSE-----------
T ss_pred h-h-------hcccccHHHHHHHHHHHhCCCCceeCCCCcchh-HHhcCCCCccccchheeecc-CCCc-----------
Confidence 0 0 0011111111111 1222222222111111 00001122456788888987 3333
Q ss_pred eeeEEEEeeCCCCCCCCh-HHHHHHHHHHHHHHHHHHH
Q 006508 299 YAILVLVLPNEQFRTWSN-QELEIVKVVADQVLVALSH 335 (642)
Q Consensus 299 ~~i~vl~l~~~~~~~~~~-~e~~ll~~~a~qva~al~~ 335 (642)
+|+|++-+..+.+|++ ..-.+|+.+|..++.++.+
T Consensus 187 --~G~LalGS~D~~rF~p~mgT~fL~~La~vv~~~L~r 222 (225)
T PF04340_consen 187 --IGLLALGSRDPDRFQPDMGTDFLEQLAEVVSAALER 222 (225)
T ss_dssp --EEEEEEEESSTTCCCSTTTTHHHHHHHHHHHHHGGG
T ss_pred --eEEEEecCCChhhCCCCccHHHHHHHHHHHHHHHhc
Confidence 4588888888888866 4678999999999888754
No 97
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=95.95 E-value=0.37 Score=43.83 Aligned_cols=124 Identities=11% Similarity=0.109 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhhC-CcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHhhcCCceEeCCCchhhhhcc
Q 006508 187 TILYTTLVELSNTLG-LQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASS 265 (642)
Q Consensus 187 ~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ 265 (642)
.-+..+...+.+.++ .+.+.+|+.++ ..+.+.. -.....-.++|.+.+..+...++++..++.+-....-
T Consensus 35 anlan~sall~~~l~~~nW~GFYl~~~--~~LvLgP----FqG~~acv~I~~GkGVCg~A~~~~~t~~V~DV~~~~g--- 105 (163)
T COG1956 35 ANLANASALLKERLPDVNWVGFYLLEG--DELVLGP----FQGKVACVRIPFGKGVCGTAAATGETVRVDDVHAFPG--- 105 (163)
T ss_pred HHHHHHHHHHHhhccCCceEEEEEecC--CeEEEec----ccCCcceEEeccCcchhHHHHhcCCeEEecccccCCC---
Confidence 334444444444444 56688888873 3444322 1112344688999999999999999988865433221
Q ss_pred CCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHHHHHHHHHH
Q 006508 266 GESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVA 332 (642)
Q Consensus 266 ~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~~a~qva~a 332 (642)
.-....-..+-|++|++..++. +|++-+.+..+..|++++...|+.+++.++-.
T Consensus 106 hiaCD~as~SEIVvPi~~~g~~-------------iGvlDiDS~~~~~Fd~~D~~~Le~~~~~l~~~ 159 (163)
T COG1956 106 HIACDAASNSEIVVPIFKDGKL-------------IGVLDIDSPTPGRFDEEDEAGLEKLAALLEKS 159 (163)
T ss_pred ccccccccCceEEEEEEECCEE-------------EEEEecCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 1112344678999999986665 45988888899999999999999998877654
No 98
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.23 E-value=0.041 Score=62.58 Aligned_cols=87 Identities=9% Similarity=0.061 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHHHhhcccCCC--cEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhh--
Q 006508 482 DERRVFQVILHMVGSLLNCNSRR--GTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTS-- 557 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~~--g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~-- 557 (642)
+...+.+++..+|+||++....+ ..|.|.+...+ .|+|.|||+|||.+....
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg------------------------~I~V~DnGrGIP~~~~~~~~ 89 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG------------------------SVSVRDNGRGIPVGIHPEEG 89 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC------------------------cEEEEEcCCCCCcccccccC
Confidence 56788999999999999964333 45666654321 389999999999998877
Q ss_pred ------ccccccc--cC-----CCCCCCCcchHHHHHHHHHHcCCEEEEEec
Q 006508 558 ------AAQLGIR--RI-----GNEGIEDRMSFSVCKKLVQLMQGNIWMVPS 596 (642)
Q Consensus 558 ------if~~f~~--~~-----~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~ 596 (642)
+|..... +. ...++-.|.|++.+..+-+. +.+++.
T Consensus 90 ~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~----l~V~s~ 137 (631)
T PRK05559 90 KSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR----LEVEVK 137 (631)
T ss_pred CcchheeeeeccccCccCCccccccCcccccchhhhhhheee----EEEEEE
Confidence 6654211 11 11122368999877766443 455554
No 99
>PRK10963 hypothetical protein; Provisional
Probab=95.03 E-value=1.5 Score=43.13 Aligned_cols=163 Identities=10% Similarity=0.067 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHH----HHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEE
Q 006508 146 FMLKKKAWDLGREVGIIMKQK----EAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTH 221 (642)
Q Consensus 146 ~~l~~~~~~l~~e~~~~~~~~----~~~~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~ 221 (642)
..+|+++.+|+.+...+-... .....+.+++.++-.+.|.++++.... .+.+.|+++.+++++.++... .
T Consensus 47 ~~LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~-~~~~~f~~~~v~l~L~~~~~~-~---- 120 (223)
T PRK10963 47 ARQRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLAAADSLQDMLMRLH-RWARDLGLAGAKIRLFPDRWR-L---- 120 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHcCCCceEEEEeccccc-c----
Confidence 445666777777777654443 344557778888889999999999986 689999999999988765311 0
Q ss_pred EecCCCCCCCCCceecCChhHHHH----hhcCCceEeCCCchhhhhccCCcccCCceeEEEeeeeecccccCCcchhhhc
Q 006508 222 QLNGRNYSDMCSSIPITDQDVVRI----KGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSA 297 (642)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~l~~~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~ 297 (642)
..... .. ......+..... .....+.+-.........-.+ ......+...+|+.....
T Consensus 121 --~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~y~G~~~~~e~~~lf~--~~~~v~S~AllpL~~~~~----------- 182 (223)
T PRK10963 121 --GAPSD--FT-HLALSRQAFEPLRIQRLGQRQHYLGPLNGPELLLLLP--EAKAVGSVAMSLLGSDGD----------- 182 (223)
T ss_pred --cCccc--hh-hhhccHHHHHHHHHHHhcCCCceeCCCChHHHHHhCC--CCCcCceeEEEeccCCCc-----------
Confidence 00000 00 000011111111 233333333322111111111 122456778889854221
Q ss_pred ceeeEEEEeeCCCCCCCCh-HHHHHHHHHHHHHHHHHHH
Q 006508 298 CYAILVLVLPNEQFRTWSN-QELEIVKVVADQVLVALSH 335 (642)
Q Consensus 298 ~~~i~vl~l~~~~~~~~~~-~e~~ll~~~a~qva~al~~ 335 (642)
+|+|++-+..+..|++ ..-.+|+.+|+.++..+.+
T Consensus 183 ---~GlLalGS~D~~rF~~~mgT~fL~~la~vvs~~L~~ 218 (223)
T PRK10963 183 ---LGVLLFSSRDAQHYQQGQGTQLLQHLALMLPELLER 218 (223)
T ss_pred ---eEEEEEeCCChhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 4688888888888866 5678999999888877744
No 100
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=94.88 E-value=0.064 Score=61.50 Aligned_cols=49 Identities=10% Similarity=0.178 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHHHHhhcccCC--CcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchh
Q 006508 482 DERRVFQVILHMVGSLLNCNSR--RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEV 554 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~--~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~ 554 (642)
|+.-+.+++..+|+||++-... ...|.|.+... + .|+|.|||.|||.+.
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~--g----------------------~I~V~DnG~GIp~~~ 77 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDD--G----------------------SVTVEDNGRGIPVDI 77 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEeCC--C----------------------cEEEEEeCCCcCccc
Confidence 4567899999999999983222 35676666532 1 299999999999874
No 101
>PRK05218 heat shock protein 90; Provisional
Probab=94.77 E-value=0.08 Score=60.13 Aligned_cols=54 Identities=11% Similarity=-0.004 Sum_probs=33.3
Q ss_pred EEEEEECCCCCCchhhhhcccccccc--------C------C-CCCCCCcchHHHHHHHHHHcCCEEEEEecC
Q 006508 540 RFEILLNEGGSQPEVSTSAAQLGIRR--------I------G-NEGIEDRMSFSVCKKLVQLMQGNIWMVPSS 597 (642)
Q Consensus 540 ~i~V~D~G~Gi~~~~~~~if~~f~~~--------~------~-~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~ 597 (642)
.|.|.|||.||+.+++...+....+. . . ..-+-.|+|++-|- +.+-++.|.|..
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f----~va~~v~V~Sr~ 142 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAF----MVADKVTVITRS 142 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhh----hccCEEEEEEcC
Confidence 38999999999999988765322111 1 0 01134789986433 334567777763
No 102
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=94.74 E-value=0.03 Score=63.71 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccccC
Q 006508 488 QVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRI 566 (642)
Q Consensus 488 qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~~~ 566 (642)
-|+..|++||+++ ....|.|.+ ++++ .-.|.|.|||.||+++++.-.+.++.+++
T Consensus 26 SVVKELVENSlDA--GAt~I~I~v--e~gG--------------------~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 26 SVVKELVENSLDA--GATRIDIEV--EGGG--------------------LKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred HHHHHHHhccccc--CCCEEEEEE--ccCC--------------------ccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 4899999999994 234555554 4433 13399999999999999998887765543
No 103
>PRK14083 HSP90 family protein; Provisional
Probab=94.69 E-value=0.034 Score=62.54 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhcccCC--------CcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhcc
Q 006508 488 QVILHMVGSLLNCNSR--------RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAA 559 (642)
Q Consensus 488 qvl~NLl~NAik~~~~--------~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if 559 (642)
..+.+|+.||.++... .+.|.|.+. +.+. -.+.|+|||+||+.+.+.+.+
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~---------------------~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGG---------------------GTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCC---------------------cEEEEEeCCCCCCHHHHHHHH
Confidence 3688999999886322 246666653 2211 458999999999999988765
No 104
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=94.08 E-value=0.19 Score=57.33 Aligned_cols=50 Identities=12% Similarity=0.245 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHHhhcccCC--CcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhh
Q 006508 482 DERRVFQVILHMVGSLLNCNSR--RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVS 555 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~--~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~ 555 (642)
|+.-+.+++..+|+||++-... ...|.|.+... + .|+|.|||.|||.+..
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~-g-----------------------~I~V~DnG~GIp~~~h 85 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTINED-G-----------------------SITVTDNGRGIPVDIH 85 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCC-C-----------------------cEEEEEeCccccCCcc
Confidence 4567899999999999983222 34677776532 1 3899999999998744
No 105
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=93.93 E-value=0.046 Score=62.37 Aligned_cols=21 Identities=10% Similarity=-0.102 Sum_probs=17.1
Q ss_pred EEEEEEECCCCCCchhhhhcc
Q 006508 539 IRFEILLNEGGSQPEVSTSAA 559 (642)
Q Consensus 539 v~i~V~D~G~Gi~~~~~~~if 559 (642)
..+.|.|||+||+.+++.+.+
T Consensus 72 ~~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 72 KTLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred CEEEEEECCCCCCHHHHHHHh
Confidence 458999999999998865544
No 106
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=92.90 E-value=0.29 Score=41.77 Aligned_cols=81 Identities=10% Similarity=0.061 Sum_probs=49.1
Q ss_pred HHHHHHhhHhHHHHHHHhcCCC--CchHHHHHHHHHHHHHhhHHHHHHHh-----------cCchhH--HHHHHHHHHHH
Q 006508 54 LIAVAYFSIPVELLYFISCSNV--PFKWVLIQFIAFIVLCGLTHLLNGWT-----------YGPHSF--QLMLSLTVFKI 118 (642)
Q Consensus 54 lia~a~~~i~~~l~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~~~~~ 118 (642)
+-+++.+.+.+.+.++++..+. ....+.+++++++++...|..+++++ |.+|++ ..+.+.+..+.
T Consensus 3 ~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~Vll~a~~~G~~~gl~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (105)
T PF13493_consen 3 IETIVLFLLATALSLLLRPFDPFASNIPMIYLLAVLLIALRYGLRPGLFAALLSSLLLNFFFFPPPFYDLTFLVYDPQDW 82 (105)
T ss_dssp -HHHHHHHHHHHHHHHSTTSS-----SSHHHHHHHHHHHHHHSS---SHHHHHHHHHHHHTTS-SS----TT-SS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCccccchhhcChhHH
Confidence 4466777777778877765432 22336667777777766555554433 244433 13335678899
Q ss_pred HHHHHHHHHHHHHHHH
Q 006508 119 LTALVSCATSITLITL 134 (642)
Q Consensus 119 ~ta~v~~~~ai~l~~l 134 (642)
++..+++.+|+.++.+
T Consensus 83 ~~~~~~l~va~v~g~l 98 (105)
T PF13493_consen 83 ITFAVFLVVALVTGYL 98 (105)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999988
No 107
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.18 Score=55.95 Aligned_cols=19 Identities=16% Similarity=0.003 Sum_probs=15.6
Q ss_pred EEEEEEECCCCCCchhhhh
Q 006508 539 IRFEILLNEGGSQPEVSTS 557 (642)
Q Consensus 539 v~i~V~D~G~Gi~~~~~~~ 557 (642)
=.++|.|||+||..+++..
T Consensus 74 kTLtI~DNGIGMT~~Ev~~ 92 (623)
T COG0326 74 KTLTISDNGIGMTKDEVIE 92 (623)
T ss_pred CEEEEEeCCCCCCHHHHHH
Confidence 3489999999999887654
No 108
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.04 E-value=7.1 Score=37.37 Aligned_cols=159 Identities=11% Similarity=0.102 Sum_probs=90.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEe
Q 006508 148 LKKKAWDLGREVGIIMKQKEAGV----HVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQL 223 (642)
Q Consensus 148 l~~~~~~l~~e~~~~~~~~~~~~----~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~ 223 (642)
+++++.+|+.+...+.+...+.. .+..+...+..+.+.+++++++-+...+-||.+.+.|.+..+.+.. .
T Consensus 50 ~R~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l~~a~l~L~~~~~~~-~----- 123 (218)
T COG3159 50 LRNRIRELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGLAAASLRLFQDSWVL-G----- 123 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCCceEEEEechhhhh-h-----
Confidence 45566777777776665554433 3666888899999999999999999999999987777665443210 0
Q ss_pred cCCCCCCCCCceecC--ChhHHHHhhcCCceEeCCCchhhhhccCCcccCCceeEEEeeeeecccccCCcchhhhcceee
Q 006508 224 NGRNYSDMCSSIPIT--DQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAI 301 (642)
Q Consensus 224 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i 301 (642)
+..+... ++.....+..+...+-.-..... .-..........+..++||-.+. ..
T Consensus 124 --------~~~ls~~a~e~~r~~~~g~~~~ylG~l~~~e~-~ll~~~ea~~vgSvAi~~L~~~~--------------~~ 180 (218)
T COG3159 124 --------ALALSRQAFEQVRIQRLGLRQAYLGPLNGAEP-LLLGLPEAKAVGSVAIVPLGSQA--------------PL 180 (218)
T ss_pred --------hHHhhhhhhHHHHHHhcCCCCcccccCCcchh-hhccCCcccccceeEEEEccCCC--------------Cc
Confidence 0001000 11122222222222221111110 00000011223455566665221 24
Q ss_pred EEEEeeCCCCCCCCh-HHHHHHHHHHHHHHHHHHH
Q 006508 302 LVLVLPNEQFRTWSN-QELEIVKVVADQVLVALSH 335 (642)
Q Consensus 302 ~vl~l~~~~~~~~~~-~e~~ll~~~a~qva~al~~ 335 (642)
|++.+.+..++.|.+ ..-.+|..+|..++.++++
T Consensus 181 gllafgS~D~~hf~~gmGT~fL~~la~vl~~~L~R 215 (218)
T COG3159 181 GLLAFGSRDPRHFQPGMGTLFLRHLALVLARLLER 215 (218)
T ss_pred eEEEecCCCccccCCCcchHHHHHHHHHHHHHHhh
Confidence 577788888888865 5678888888888777653
No 109
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=91.16 E-value=0.19 Score=57.04 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHHhhcccC--CCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchh-----
Q 006508 482 DERRVFQVILHMVGSLLNCNS--RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEV----- 554 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~--~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~----- 554 (642)
+.....+++..+|+||++-.- ....|.|.+... =.|+|.|||.|||.+.
T Consensus 27 gs~~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d------------------------~~I~V~DnGrGIp~~~h~~~g 82 (625)
T TIGR01055 27 DTTRPNHLVQEVIDNSVDEALAGFASIIMVILHQD------------------------QSIEVFDNGRGMPVDIHPKEG 82 (625)
T ss_pred CCCCcceeehhhhhcccchhhcCCCCEEEEEEeCC------------------------CeEEEEecCCccCcccccccC
Confidence 444457889999999998222 245666666432 1389999999999887
Q ss_pred ---hhhccc-c-----cccc-CCCCCCCCcchHHHHHHHHH
Q 006508 555 ---STSAAQ-L-----GIRR-IGNEGIEDRMSFSVCKKLVQ 585 (642)
Q Consensus 555 ---~~~if~-~-----f~~~-~~~~~~G~GLGL~i~k~iv~ 585 (642)
.+-+|. . |... +...++-.|.|++.+..+-+
T Consensus 83 ~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~ 123 (625)
T TIGR01055 83 VSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSK 123 (625)
T ss_pred CcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcC
Confidence 554552 1 1111 11112236889988776655
No 110
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=90.30 E-value=0.38 Score=54.52 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcccCC--CcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhh
Q 006508 487 FQVILHMVGSLLNCNSR--RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVST 556 (642)
Q Consensus 487 ~qvl~NLl~NAik~~~~--~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~ 556 (642)
.+++..+|+||++..-. ...|.|.+...+ .|+|.|||.|||.+..+
T Consensus 3 ~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g------------------------~I~V~DnG~GIp~~~h~ 50 (594)
T smart00433 3 HHLVDEIVDNAADEALAGYMDTIKVTIDKDN------------------------SISVEDNGRGIPVEIHP 50 (594)
T ss_pred eEEEeeehhcccchhccCCCCEEEEEEeCCC------------------------eEEEEEeCCceeCCccC
Confidence 45677888999885322 456666664321 38999999999976543
No 111
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=90.05 E-value=4.1 Score=32.52 Aligned_cols=72 Identities=11% Similarity=0.217 Sum_probs=54.0
Q ss_pred HHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHHHHHHH
Q 006508 377 MSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLA 456 (642)
Q Consensus 377 isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~~~~~~ 456 (642)
+.|.+||-|..|.+++.+-.....+++.++.++.+......+..+=+.+..-. ....+++.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~vh~~L~~~~---------~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALVHEQLYQSE---------DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCCeecHHHHHHHHHHHH
Confidence 57999999999999999877777778878888777777666665544443221 234799999999988776
Q ss_pred H
Q 006508 457 R 457 (642)
Q Consensus 457 ~ 457 (642)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 4
No 112
>PTZ00130 heat shock protein 90; Provisional
Probab=89.28 E-value=0.41 Score=55.14 Aligned_cols=19 Identities=16% Similarity=-0.052 Sum_probs=15.8
Q ss_pred EEEEEECCCCCCchhhhhc
Q 006508 540 RFEILLNEGGSQPEVSTSA 558 (642)
Q Consensus 540 ~i~V~D~G~Gi~~~~~~~i 558 (642)
.+.|+|||+||..+.+..-
T Consensus 136 tLtI~DnGIGMT~eEl~~n 154 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINN 154 (814)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4889999999999887543
No 113
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.15 E-value=0.92 Score=40.31 Aligned_cols=30 Identities=7% Similarity=0.087 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhcccCCCcEEEEEEEEecC
Q 006508 486 VFQVILHMVGSLLNCNSRRGTVLFRVVSENG 516 (642)
Q Consensus 486 l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~ 516 (642)
+..+...|++||+||. ..|.|+|.++..+.
T Consensus 64 vgYl~NELiENAVKfr-a~geIvieasl~s~ 93 (184)
T COG5381 64 VGYLANELIENAVKFR-ATGEIVIEASLYSH 93 (184)
T ss_pred HHHHHHHHHHhhhccc-CCCcEEEEEEeccc
Confidence 4457788999999964 56689998877643
No 114
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=87.08 E-value=0.57 Score=54.11 Aligned_cols=48 Identities=8% Similarity=0.218 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhcccCC--CcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhh
Q 006508 484 RRVFQVILHMVGSLLNCNSR--RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVS 555 (642)
Q Consensus 484 ~~l~qvl~NLl~NAik~~~~--~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~ 555 (642)
.-|.+++..+|+||++-.-. ...|.|.+... + .|+|.|||.|||.+..
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~d-g-----------------------sIsV~DnGrGIPvd~h 85 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIHAD-G-----------------------SVSVSDNGRGIPTDIH 85 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEcCC-C-----------------------eEEEEEcCCcccCCcc
Confidence 46899999999999983222 35676666432 1 3899999999998743
No 115
>TIGR02851 spore_V_T stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See PFAM model pfam04014).
Probab=86.35 E-value=19 Score=34.12 Aligned_cols=124 Identities=10% Similarity=0.083 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEEEEecCCCCCCCCCceecCChhHHHHhhcCCceEeCCCch--h
Q 006508 183 LDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSE--L 260 (642)
Q Consensus 183 ~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--l 260 (642)
.+..+..+.+.+.+.+.+++ +|.+-|.+. .+.|.-.+.. ... .. + -.....+++.+++......... .
T Consensus 52 ~~~~~~A~~~aeII~~~t~~---aVaITDr~~---ILA~~G~g~d-~~~-~~-~-is~~t~~~i~~gk~~~~~~~~~~~i 121 (180)
T TIGR02851 52 GELGDFAKEYAESLYQSLGH---IVLITDRDT---VIAVAGVSKK-EYL-NK-P-ISDELEDTMEERKTVILSDTKDGPI 121 (180)
T ss_pred cchHHHHHHHHHHHHHHhCC---EEEEECCCc---EEEEECCChh-hcC-CC-c-cCHHHHHHHHcCCEEEecCCcccee
Confidence 45667777888888999987 455555442 2232211111 111 12 3 4566778888888877764421 1
Q ss_pred hhhccCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCC--CCChHHHHHHHHHHHHHHHHH
Q 006508 261 AAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFR--TWSNQELEIVKVVADQVLVAL 333 (642)
Q Consensus 261 ~~~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~--~~~~~e~~ll~~~a~qva~al 333 (642)
+.... ......+++.+|+...++..| .+.+. ...+ .+++.+.++.+.+|..++..+
T Consensus 122 ~c~~~---~~~~l~s~ii~Pl~~~g~viG-------------tLkly-~k~~~~~~~~~e~~la~glA~lLS~QL 179 (180)
T TIGR02851 122 EIIDG---QEFEYTSQVIAPIIAEGDPIG-------------AVIIF-SKEPGEKLGEVEQKAAETAAAFLGKQM 179 (180)
T ss_pred ccccC---CCCCcceEEEEEEEECCeEEE-------------EEEEE-ECCccCCCCHHHHHHHHHHHHHHHHhh
Confidence 11101 111246899999998766655 66666 5555 899999999999998877654
No 116
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=84.72 E-value=0.54 Score=53.16 Aligned_cols=47 Identities=15% Similarity=-0.034 Sum_probs=27.4
Q ss_pred EEEEECCCCCCchhhhh-----------ccc------cccccCCCCCCCCcchHHHHHHHHHHc
Q 006508 541 FEILLNEGGSQPEVSTS-----------AAQ------LGIRRIGNEGIEDRMSFSVCKKLVQLM 587 (642)
Q Consensus 541 i~V~D~G~Gi~~~~~~~-----------if~------~f~~~~~~~~~G~GLGL~i~k~iv~~~ 587 (642)
++|.|||.|||-+.... +|. .|...+.-+++-.|.|.+.+.-+-+.+
T Consensus 81 isV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 81 VTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 89999999999865421 121 121111112334788888776655443
No 117
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=82.85 E-value=6.3 Score=30.10 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=32.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q 006508 374 QKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTL 421 (642)
Q Consensus 374 l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~l 421 (642)
+...-||+.|-|..|.|++++= ..++..+|++.+.+.....+.+
T Consensus 16 lR~~RHD~~NhLqvI~gllqlg----~~~~a~eYi~~~~~~~~~~s~l 59 (62)
T PF14689_consen 16 LRAQRHDFLNHLQVIYGLLQLG----KYEEAKEYIKELSKDLQQESEL 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHH
Confidence 4556899999999999998763 3455677888777777666543
No 118
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=82.84 E-value=89 Score=35.26 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEee
Q 006508 171 HVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMP 210 (642)
Q Consensus 171 ~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~ 210 (642)
+...+.+.++.+.|..+-|-.--..+....+++.+++|+-
T Consensus 329 ~~arl~~~ma~~~~~~d~L~~~~~dll~L~~adGaal~fg 368 (750)
T COG4251 329 HHARLLRYMAHAADFVDGLIDHQDDLLDLMPADGAALCFG 368 (750)
T ss_pred HHHHHHHHHhhhcchhhhhcCCchhhHhhccCCceEEEEC
Confidence 3344566666777877777777778888999998888763
No 119
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=79.52 E-value=41 Score=29.20 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=10.4
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 006508 150 KKAWDLGREVGIIMKQKE 167 (642)
Q Consensus 150 ~~~~~l~~e~~~~~~~~~ 167 (642)
.+..+|-||++..++.++
T Consensus 93 ~~i~~L~qeiAl~e~~~~ 110 (115)
T PF10066_consen 93 EKIKRLAQEIALLEAEEK 110 (115)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 345667777776644433
No 120
>PLN03237 DNA topoisomerase 2; Provisional
Probab=79.43 E-value=2.3 Score=52.25 Aligned_cols=47 Identities=9% Similarity=0.190 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhccc---CCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhh
Q 006508 486 VFQVILHMVGSLLNCN---SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVS 555 (642)
Q Consensus 486 l~qvl~NLl~NAik~~---~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~ 555 (642)
|.+++..+|.||++.. +....|.|.+..+++ .|+|.|||.|||-+..
T Consensus 78 L~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~g-----------------------sIsV~DnGRGIPV~iH 127 (1465)
T PLN03237 78 LYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQN-----------------------LISVYNNGDGVPVEIH 127 (1465)
T ss_pred hhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCCC-----------------------EEEEEecCccccCCCC
Confidence 4556666666665532 345677777765443 2899999999998754
No 121
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=79.12 E-value=2.4 Score=46.39 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=39.3
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEE-EEEEECCCCCCchhhhhccccccccC
Q 006508 489 VILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIR-FEILLNEGGSQPEVSTSAAQLGIRRI 566 (642)
Q Consensus 489 vl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-i~V~D~G~Gi~~~~~~~if~~f~~~~ 566 (642)
++..|++|++++ +...|.|.+. +++ ++ +.|+|||.||..++++-+-++|.+.+
T Consensus 31 AlKEliENSLDA--~ST~I~V~vk--~GG---------------------LKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 31 ALKELIENSLDA--NSTSIDVLVK--DGG---------------------LKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred HHHHHHhccccC--CCceEEEEEe--cCC---------------------eEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 788899999984 4456666654 332 33 56889999999999998888876543
No 122
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=77.73 E-value=1.9 Score=49.20 Aligned_cols=50 Identities=6% Similarity=0.178 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHHHhhccc--CCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhh
Q 006508 482 DERRVFQVILHMVGSLLNCN--SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVS 555 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~--~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~ 555 (642)
|+.-|.+++..+|+||++-. .....|.|.+..+ + .++|.|||.|||.+..
T Consensus 31 ~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~d-g-----------------------sitV~DnGrGIPv~~h 82 (637)
T TIGR01058 31 DSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKD-N-----------------------SITVQDDGRGIPTGIH 82 (637)
T ss_pred CcchhheehhhhhcchhhhhhcCCCcEEEEEEcCC-C-----------------------eEEEEECCCcccCccc
Confidence 35667888888888888732 2345666666522 1 3899999999997643
No 123
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=76.77 E-value=48 Score=28.50 Aligned_cols=14 Identities=14% Similarity=0.244 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 006508 118 ILTALVSCATSITL 131 (642)
Q Consensus 118 ~~ta~v~~~~ai~l 131 (642)
+++.++||..++..
T Consensus 37 lLnl~lS~~Aa~~a 50 (108)
T PF06210_consen 37 LLNLVLSLEAAYQA 50 (108)
T ss_pred HHHHHHHHHHHHHH
Confidence 36667777666543
No 124
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=76.73 E-value=2.8 Score=46.92 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhcc
Q 006508 488 QVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAA 559 (642)
Q Consensus 488 qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if 559 (642)
-++..|++|++++ ....|.|.+...+ .=.|+|.|||.||++.+.+-+-
T Consensus 23 sAVKELvENSiDA--GAT~I~I~~kdyG----------------------~d~IEV~DNG~GI~~~n~~~l~ 70 (672)
T KOG1978|consen 23 SAVKELVENSIDA--GATAIDIKVKDYG----------------------SDSIEVSDNGSGISATDFEGLA 70 (672)
T ss_pred HHHHHHHhcCccc--CCceeeEecCCCC----------------------cceEEEecCCCCCCccchhhhh
Confidence 6889999999983 3345666664332 1248999999999988776553
No 125
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=76.15 E-value=3.8 Score=45.81 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhhccccccc
Q 006508 485 RVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIR 564 (642)
Q Consensus 485 ~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~if~~f~~ 564 (642)
-+.|++..|+-|.+++ ....|.|.+..+. ..+.|.|+|.|+..+++..+-+++++
T Consensus 21 sla~~VeElv~NSiDA--~At~V~v~V~~~t-----------------------~sv~ViDdG~G~~rdDl~~lg~ry~T 75 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDA--EATCVAVRVNMET-----------------------FSVQVIDDGFGMGRDDLEKLGNRYFT 75 (1142)
T ss_pred HHHHHHHHHHhhcccc--CceEEEEEecCce-----------------------eEEEEEecCCCccHHHHHHHHhhhhh
Confidence 4778999999999984 4567777775442 77899999999999999888665443
No 126
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=76.07 E-value=69 Score=33.32 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 006508 339 LEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVL 418 (642)
Q Consensus 339 ~~e~~~~~~~l~~~~~~L~~a~~~~~~~~~~~~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l 418 (642)
.+|..+++++.++.++.-+.-++++++..+..+...+.++|.-+. |..+...+.-++. ..+++..+.++.+++...+.
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~-~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKK-SLSAEERELIEKLEEDIKER 80 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHH
Confidence 345555555555555555556667777778888899999998885 3444433333332 25667778888888888887
Q ss_pred HHHHHHHHhhCccCCC
Q 006508 419 STLISDVMDNSPKDSG 434 (642)
Q Consensus 419 ~~li~~ll~~s~~e~~ 434 (642)
...+.|+-.+.-..+|
T Consensus 81 ~~~l~DmEa~LPkkNG 96 (330)
T PF07851_consen 81 RCQLFDMEAFLPKKNG 96 (330)
T ss_pred HhhHHHHHhhCCCCCC
Confidence 7777777655433344
No 127
>PLN03128 DNA topoisomerase 2; Provisional
Probab=76.04 E-value=4.3 Score=49.23 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhccc---CCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhh
Q 006508 485 RVFQVILHMVGSLLNCN---SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVS 555 (642)
Q Consensus 485 ~l~qvl~NLl~NAik~~---~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~ 555 (642)
-|.+++..+|.||++.. +....|.|.+..+++ .|+|.|||.|||-+..
T Consensus 52 GL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dg-----------------------sIsV~DnGrGIPv~ih 102 (1135)
T PLN03128 52 GLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQN-----------------------TISVYNNGKGIPVEIH 102 (1135)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCC-----------------------eEEEEecCccccCCCC
Confidence 35566666666666532 334567777665433 2899999999997654
No 128
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=73.01 E-value=4.5 Score=49.86 Aligned_cols=48 Identities=10% Similarity=0.234 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhccc------CCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhh
Q 006508 485 RVFQVILHMVGSLLNCN------SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVS 555 (642)
Q Consensus 485 ~l~qvl~NLl~NAik~~------~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~ 555 (642)
-|.+++..+|.||++.. +....|.|.+..+.+ .|+|.|||.|||-+..
T Consensus 57 GL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~g-----------------------~IsV~dnGrGIPv~~h 110 (1388)
T PTZ00108 57 GLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEENG-----------------------EISVYNDGEGIPVQIH 110 (1388)
T ss_pred hhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccCC-----------------------eEEEEecCCcccCCCC
Confidence 35556666666666532 234566666654422 2899999999998754
No 129
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=70.90 E-value=94 Score=31.68 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006508 112 SLTVFKILTALVSCATSITLITLIPL 137 (642)
Q Consensus 112 ~~~~~~~~ta~v~~~~ai~l~~lip~ 137 (642)
.....-++.++...+.++..+.+.|.
T Consensus 73 ~~~~l~~~Gglwy~~lsl~~~~l~p~ 98 (284)
T PF12805_consen 73 EHALLFLAGGLWYLLLSLLWWPLRPY 98 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34555667777777777777777665
No 130
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=61.51 E-value=7 Score=43.60 Aligned_cols=50 Identities=10% Similarity=0.208 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhcc--cCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhhh
Q 006508 484 RRVFQVILHMVGSLLNC--NSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTS 557 (642)
Q Consensus 484 ~~l~qvl~NLl~NAik~--~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~~ 557 (642)
..|.+++..+++||++- ..-...|.|.+..+ + .++|.|||.|||-+..+.
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d-~-----------------------sisV~DnGRGIPvdiH~~ 86 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGYADRIDVTLHED-G-----------------------SISVEDNGRGIPVDIHPK 86 (635)
T ss_pred CcceeeEeEeeechHhHHhhCcCcEEEEEEcCC-C-----------------------eEEEEECCCCCccccCCC
Confidence 45666666666666552 12345677776532 2 289999999999877443
No 131
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=59.41 E-value=2 Score=50.05 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhccc--CCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhhh
Q 006508 483 ERRVFQVILHMVGSLLNCN--SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVST 556 (642)
Q Consensus 483 ~~~l~qvl~NLl~NAik~~--~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~~ 556 (642)
..-|.+++..+|+||++-. .....|.|.+..+ + .++|+|||.|||-+..+
T Consensus 127 ~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~D-g-----------------------sItV~DnGRGIPvd~h~ 178 (903)
T PTZ00109 127 EKGLHQLLFEILDNSVDEYLAGECNKITVVLHKD-G-----------------------SVEISDNGRGIPCDVSE 178 (903)
T ss_pred CCcceEEEEEEeeccchhhccCCCcEEEEEEcCC-C-----------------------eEEEEeCCccccccccc
Confidence 3446666777777777632 2345666666432 1 28999999999986543
No 132
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=57.08 E-value=1.2e+02 Score=25.80 Aligned_cols=16 Identities=0% Similarity=-0.062 Sum_probs=7.0
Q ss_pred HHHhHHHHHHHHHHHH
Q 006508 153 WDLGREVGIIMKQKEA 168 (642)
Q Consensus 153 ~~l~~e~~~~~~~~~~ 168 (642)
++++++...++++.+.
T Consensus 37 ~~~~~e~~~l~~~n~~ 52 (105)
T PRK00888 37 AAQQQTNAKLKARNDQ 52 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 133
>PRK11677 hypothetical protein; Provisional
Probab=57.07 E-value=1e+02 Score=27.55 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhhHhhh
Q 006508 120 TALVSCATSITLITLIPLLLKV 141 (642)
Q Consensus 120 ta~v~~~~ai~l~~lip~~l~~ 141 (642)
.+++.++++++++.++.++..-
T Consensus 5 ~a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 3445555666666665555443
No 134
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.97 E-value=48 Score=25.46 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=5.6
Q ss_pred HHHhHHHHHHHHH
Q 006508 153 WDLGREVGIIMKQ 165 (642)
Q Consensus 153 ~~l~~e~~~~~~~ 165 (642)
++++++++.++++
T Consensus 51 ~~~~k~l~~le~e 63 (68)
T PF06305_consen 51 RRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 135
>PF14770 TMEM18: Transmembrane protein 18
Probab=52.75 E-value=1.2e+02 Score=26.80 Aligned_cols=47 Identities=21% Similarity=0.513 Sum_probs=24.2
Q ss_pred HHHHHHHhhHhHHHHHHHhcCCCCchHHHHHHHHHHHHHhhHHHHHHHh
Q 006508 53 FLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWT 101 (642)
Q Consensus 53 ~lia~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 101 (642)
+++++..|=+-+.++...+|++..+...++++....+.| +--+|-+.
T Consensus 16 wl~~L~~fH~~~~~~~~~tr~~~~~q~~lf~~ll~~v~~--aE~iN~~~ 62 (123)
T PF14770_consen 16 WLIGLIAFHVLLLLLAILTRRRYNFQMILFLILLLLVYC--AEYINEYA 62 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 355566565666666666666545555554444443333 33444433
No 136
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=52.08 E-value=2.1e+02 Score=28.22 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH--hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006508 144 REFMLKKKAWDLGREVGIIMKQKEA--GVHVRMLTQEIRKSLDRHTILYTTLVEL 196 (642)
Q Consensus 144 ~e~~l~~~~~~l~~e~~~~~~~~~~--~~~l~~lt~~i~~s~d~~~il~~~~~~l 196 (642)
.+++-.+-+.++++|+..+.++... .+|.+.+++-=-.-.|.|.+-+-.....
T Consensus 162 ~~~L~~~LNnrlE~eV~~i~~~~~~~l~rHy~~L~~lrI~lSD~EA~~y~~i~i~ 216 (237)
T PF13748_consen 162 NYRLYRRLNNRLEKEVDIIERRKPASLRRHYRRLSRLRIRLSDREALGYLLIGIV 216 (237)
T ss_pred HHHHHHHHhHHHHHHccHhhcCChHHHHHHHHHHHhhhhhhchHHHHHHHHHHHH
Confidence 4455556678999999988776543 4666666552223347777666554433
No 137
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=49.39 E-value=1.5e+02 Score=24.31 Aligned_cols=53 Identities=23% Similarity=0.202 Sum_probs=24.7
Q ss_pred HHHHHHHhhhHhhhhhHHHHHHHHHHHHhHHHHHHHHHH-HHhHHHHHHHHHHH
Q 006508 128 SITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQK-EAGVHVRMLTQEIR 180 (642)
Q Consensus 128 ai~l~~lip~~l~~~~~e~~l~~~~~~l~~e~~~~~~~~-~~~~~l~~lt~~i~ 180 (642)
+++.+.+++-+.+++..-.-.++...++++++..+.++- +.....+.+...+.
T Consensus 11 ~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 11 AVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555554433333444556666666554443 22334444554444
No 138
>TIGR00799 mtp Golgi 4-transmembrane spanning transporter. The proteins of the MET family have 4 TMS regions and are located in late endosomal or lysosomal membranes. Substrates of the mouse MTP transporter include thymidine, both nucleoside and nucleobase analogues, antibiotics, anthracyclines, ionophores and steroid hormones. MET transporters may be involved in the subcellular compartmentation of steroid hormones and other compounds.Drug sensitivity by mouse MET was regulated by compounds that inhibit lysosomal function, interface with intracellular cholesterol transport, or modulate the multidrug resistance phenotype of mammalian cells. Thus, MET family members may compartmentalize diverse hydrophobic molecules, thereby affecting cellular drug sensitivity,nucleoside/nucleobase availability and steroid hormone responses.
Probab=49.30 E-value=2.7e+02 Score=27.31 Aligned_cols=92 Identities=27% Similarity=0.419 Sum_probs=51.9
Q ss_pred HHHHHhhhHHHHHHHhhHhHHHHHHH-hcC-CCCchHHHHHHHHHHHHHhhHHHHHHHh-------c-----CchhHHHH
Q 006508 45 LETQKVSDFLIAVAYFSIPVELLYFI-SCS-NVPFKWVLIQFIAFIVLCGLTHLLNGWT-------Y-----GPHSFQLM 110 (642)
Q Consensus 45 ~~~~~~sd~lia~a~~~i~~~l~~~~-~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------~-----~~~~~~~~ 110 (642)
.--+..|.++...+.|.|.+.|+.++ +++ ..-.....++++=|+ .|- -|+.+.+. + +|.-..++
T Consensus 56 ~ia~~~ss~~~~~~l~~~slsll~gvI~~r~~~l~pfl~~Qi~D~~-~cl-l~~~g~yie~pa~l~~~~~~~~~~liPFf 133 (258)
T TIGR00799 56 RIADLYSSFLLINALFIISVSLLMGVVKNREKYLYPFLSLQIMDFL-LCL-LTLLGSYIELPAYLKLARPRPGPSKIPLM 133 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeHHHHHHHHHHH-HHH-HHHhhhhhcchhhhhhccccCccccchHH
Confidence 34467777888888899999999986 444 332333456666543 231 22222221 1 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 006508 111 LSLTVFKILTALVSCATSITLITLIPLLLKVK 142 (642)
Q Consensus 111 ~~~~~~~~~ta~v~~~~ai~l~~lip~~l~~~ 142 (642)
-..++-+.++++||+....-+|..+..+
T Consensus 134 ----clQifDF~Ls~Lta~ss~~ylp~y~~~~ 161 (258)
T TIGR00799 134 ----TLQLLDFCLSILTLCSSYMEVPTYLNFK 161 (258)
T ss_pred ----HHHHHHHHHHHHHHhhhheechHHHHHH
Confidence 1246677788888888887777654443
No 139
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=44.94 E-value=69 Score=30.66 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=53.3
Q ss_pred hhHHHHhhcCCceEeCCCchhhhhccCCcccCCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHH
Q 006508 240 QDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQEL 319 (642)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~ 319 (642)
+.+.++.++.+...+.+....+-.....+-..+..+.++.|+-.. |++++-...+|.||..|.
T Consensus 122 ~i~~~~~~~~~~~yL~nl~lyPGr~Ef~~lP~ntq~VlvqP~g~~-----------------G~lvlgs~~~R~ft~~D~ 184 (195)
T PF11152_consen 122 PICQRAMESGKLIYLVNLKLYPGRVEFDYLPENTQSVLVQPLGQN-----------------GVLVLGSNSPRAFTKSDE 184 (195)
T ss_pred HHHHHHHhcCCceeccccccCCCchhhhhcCCCCcEEEEEEcCCC-----------------eEEEEeeCCccccCHHHH
Confidence 456777888887777665444332333355677889999997642 488888999999999999
Q ss_pred HHHHHHHHH
Q 006508 320 EIVKVVADQ 328 (642)
Q Consensus 320 ~ll~~~a~q 328 (642)
.-++.+|+.
T Consensus 185 ~Wi~~iA~K 193 (195)
T PF11152_consen 185 AWIAGIADK 193 (195)
T ss_pred HHHHHHHHh
Confidence 999998875
No 140
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=44.56 E-value=1.7e+02 Score=25.55 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=40.6
Q ss_pred HHHHHhhHhHHHHHHHhcCCCCchHHHHHHHHHHHHHhhHHHHHHHhc-CchhHHHHHHHHHHHHHHHH
Q 006508 55 IAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTY-GPHSFQLMLSLTVFKILTAL 122 (642)
Q Consensus 55 ia~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ta~ 122 (642)
++..|+++-..+++...+.. -.+..+...+.++...|++++.+++.. .|+++.. ...+..+..++
T Consensus 50 ~~G~~~g~Gl~~l~~~~~~~-~~~~al~~l~~~~~~~~lgRlis~~~dG~p~~~~~--~~l~~Elv~~~ 115 (124)
T PF14248_consen 50 YGGLYLGLGLLLLWAAFKPE-YRRPALRLLALFIGGGGLGRLISLALDGPPSPFLW--VALIFELVLAP 115 (124)
T ss_pred HHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHH--HHHHHHHHHHH
Confidence 56667777777777655432 234455566778889999999999987 4444332 23444444443
No 141
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=41.82 E-value=3.8e+02 Score=27.02 Aligned_cols=31 Identities=10% Similarity=0.091 Sum_probs=17.1
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHh
Q 006508 151 KAWDLGREVGIIMKQKEAGVHVRMLTQEIRK 181 (642)
Q Consensus 151 ~~~~l~~e~~~~~~~~~~~~~l~~lt~~i~~ 181 (642)
.+.+|++|+.+++.+....+.++.=.+++++
T Consensus 77 en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 77 ENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777666665555444443344333
No 142
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=41.70 E-value=5.3e+02 Score=28.61 Aligned_cols=13 Identities=0% Similarity=0.248 Sum_probs=7.1
Q ss_pred CCcEEEEEEEEec
Q 006508 503 RRGTVLFRVVSEN 515 (642)
Q Consensus 503 ~~g~I~i~v~~~~ 515 (642)
+++.+.++++..+
T Consensus 438 ~~~~i~l~V~DnG 450 (495)
T PRK11644 438 QDERLMLVIEDDG 450 (495)
T ss_pred cCCEEEEEEEECC
Confidence 4455666665444
No 143
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=41.41 E-value=44 Score=27.16 Aligned_cols=68 Identities=6% Similarity=0.135 Sum_probs=39.8
Q ss_pred HHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCCccceeeeeeHHHHHHHHHHHH
Q 006508 377 MSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLA 456 (642)
Q Consensus 377 isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~~~~~l~~~~~~L~~li~~~~~~~ 456 (642)
+.|-+||-++.|.+++..-.+...+.+ ++.+.+..-..-|.+ ..+++. + -....++|.++++..+.-+
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~~~s~~--~~~~~~~~Rl~ALa~-a~~ll~--~-------~~~~~~~L~~lv~~~l~p~ 69 (83)
T PF07536_consen 2 LNHRVKNLLAVVQAIARQTARSAASVE--EFAEAFSGRLQALAR-AHDLLS--R-------SDWEGVSLRDLVEAELAPY 69 (83)
T ss_pred chhHHHHHHHHHHHHHHHHcccCCCHH--HHHHHHHHHHHHHHH-HHHHHh--c-------CCCCCccHHHHHHHHHHhc
Confidence 589999999999999988765433332 233333322222222 122322 1 1235789999999876654
No 144
>PRK04158 transcriptional repressor CodY; Validated
Probab=41.36 E-value=3.8e+02 Score=26.85 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=37.0
Q ss_pred CCceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 006508 271 SGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAA 337 (642)
Q Consensus 271 ~g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~ 337 (642)
.+.+....+|+.....- .|.+++... ...|+++++-+++..|.-++..+-+..
T Consensus 107 ~~~~~~tIvPI~ggGeR-------------LGTLvl~r~-~~~f~~dDliL~EyaATVVgLEIlR~~ 159 (256)
T PRK04158 107 FPDKLTTIVPIIGGGER-------------LGTLILARF-DKEFTDDDLILAEYAATVVGMEILREK 159 (256)
T ss_pred ccCceEEEEEEecCCeE-------------EEEEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888764433 346555433 478999999999999999998875443
No 145
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=41.14 E-value=1.9e+02 Score=27.70 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=25.5
Q ss_pred HHHHHhcC-CCCchHHHHHHHHHHHHHhhHHHHHHHh
Q 006508 66 LLYFISCS-NVPFKWVLIQFIAFIVLCGLTHLLNGWT 101 (642)
Q Consensus 66 l~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 101 (642)
.+||+.++ .-..+.+++-++++++-+.+|-++..|.
T Consensus 128 ~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l 164 (194)
T PF11833_consen 128 CIYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWL 164 (194)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44788766 4467788888888877776666766665
No 146
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=40.16 E-value=1.7e+02 Score=22.43 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=11.8
Q ss_pred hhhhHHHHHHHHHHHHhHHHH
Q 006508 140 KVKVREFMLKKKAWDLGREVG 160 (642)
Q Consensus 140 ~~~~~e~~l~~~~~~l~~e~~ 160 (642)
.++.|..+|+.-.+++++|.+
T Consensus 37 sv~qrr~iL~~v~r~~aReaR 57 (67)
T COG3114 37 SVLQRRAILRGVARQRAREAR 57 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666665555555544
No 147
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=39.87 E-value=1.8e+02 Score=22.80 Aligned_cols=16 Identities=6% Similarity=0.034 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 006508 119 LTALVSCATSITLITL 134 (642)
Q Consensus 119 ~ta~v~~~~ai~l~~l 134 (642)
+...++++.|++.+.|
T Consensus 29 ~LtPlfiisa~lSwkL 44 (74)
T PF15086_consen 29 ILTPLFIISAVLSWKL 44 (74)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3334445555555555
No 148
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=37.40 E-value=3.6e+02 Score=25.43 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=34.6
Q ss_pred CceeEEEeeeeecccccCCcchhhhcceeeEEEEeeCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 006508 272 GPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAA 337 (642)
Q Consensus 272 g~~~~i~~Pl~~~~~~~g~~p~~~~~~~~i~vl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~ 337 (642)
..+....+|+... +..+|.|++... ...|+++|+=+.+-.|.-|+.-+-+++
T Consensus 106 ~~k~~tivPI~g~-------------GeRLGTLvl~r~-~~~F~ddDLILaEY~ATVVGmEiLr~~ 157 (177)
T PF06018_consen 106 PNKYTTIVPIYGG-------------GERLGTLVLARF-DKEFTDDDLILAEYGATVVGMEILRSK 157 (177)
T ss_dssp SSSEEEEEEEEET-------------TEEEEEEEEEES-S----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEEeeC-------------CeEEEEEEEEEc-CCCCChhhhHHHHHHHHHHHHHHHHHH
Confidence 3446678888753 344557666543 568999999999999999999885554
No 149
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=37.37 E-value=2.3e+02 Score=27.05 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=20.1
Q ss_pred cCCCCCCCChhhHH-HHHHhhhHHHHHHHhhHhHHHHHH
Q 006508 32 CDDDASSWSIESIL-ETQKVSDFLIAVAYFSIPVELLYF 69 (642)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~sd~lia~a~~~i~~~l~~~ 69 (642)
|.+....++.+.+. .|..-.+.+-+...|||...+.|+
T Consensus 51 C~~~~y~~~~~~~w~~C~~rr~~Fr~aqAfaIISI~v~~ 89 (192)
T PTZ00201 51 CKSTEYDVTVDMLWANCPARILQFRVAQALAVISILVYG 89 (192)
T ss_pred CCCCCcCCchHhHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 44332344444222 576666766666666666555554
No 150
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=37.11 E-value=2.1e+02 Score=24.78 Aligned_cols=11 Identities=9% Similarity=0.283 Sum_probs=5.1
Q ss_pred HHHhHHHHHHH
Q 006508 153 WDLGREVGIIM 163 (642)
Q Consensus 153 ~~l~~e~~~~~ 163 (642)
++++++.+.+|
T Consensus 109 ~~l~~d~~~lk 119 (121)
T PF07332_consen 109 AELKEDIAALK 119 (121)
T ss_pred HHHHHHHHHhh
Confidence 44555544433
No 151
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=35.50 E-value=3.3e+02 Score=25.46 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=21.9
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 006508 139 LKVKVREFMLKKKAWDLGREVGIIMKQKE 167 (642)
Q Consensus 139 l~~~~~e~~l~~~~~~l~~e~~~~~~~~~ 167 (642)
.....+...+++|...|+.|++++++|+.
T Consensus 148 ~gs~~~~~~LE~kv~~LE~qvr~L~~R~~ 176 (177)
T PF14965_consen 148 VGSYWRSASLEAKVRHLERQVRELNIRQR 176 (177)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 44445557778888999999999888764
No 152
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=35.28 E-value=3.4e+02 Score=24.81 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=25.1
Q ss_pred cCCCCCCCChhhHH--HHHHhhhHHHHHHHhhHhHHHHHHH
Q 006508 32 CDDDASSWSIESIL--ETQKVSDFLIAVAYFSIPVELLYFI 70 (642)
Q Consensus 32 ~~~~~~~~~~~~~~--~~~~~sd~lia~a~~~i~~~l~~~~ 70 (642)
|++....++.+ .+ .|....+.+-+...|+|...++|++
T Consensus 39 c~~~~y~~~~~-~~~~~C~~~~~~f~aa~afaIisi~~~~~ 78 (155)
T PF07344_consen 39 CGSVSYSLRVD-DLWFNCPQRRSRFRAAQAFAIISIFVYGA 78 (155)
T ss_pred CCCCccccchh-hhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333344454 44 7788888888888888877777753
No 153
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=35.05 E-value=2.2e+02 Score=30.26 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=26.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 006508 371 NAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVET 410 (642)
Q Consensus 371 ~~~l~~isHeLrtPL~~I~g~~~lL~~~~~~~~~~~~l~~ 410 (642)
..+-..++..+||-.....+++.-+.+-...++..+.+..
T Consensus 249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4677888999999777777777766654444444444433
No 154
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=34.43 E-value=6.2e+02 Score=27.31 Aligned_cols=7 Identities=29% Similarity=0.842 Sum_probs=4.6
Q ss_pred CCCCccc
Q 006508 25 NNFPRCN 31 (642)
Q Consensus 25 ~~~~~~~ 31 (642)
+++|+|+
T Consensus 287 ~~wP~c~ 293 (403)
T PTZ00127 287 NTWPKMG 293 (403)
T ss_pred CCCCCCC
Confidence 4569974
No 155
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.86 E-value=62 Score=32.61 Aligned_cols=23 Identities=22% Similarity=0.149 Sum_probs=16.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHH
Q 006508 149 KKKAWDLGREVGIIMKQKEAGVH 171 (642)
Q Consensus 149 ~~~~~~l~~e~~~~~~~~~~~~~ 171 (642)
.++.+||++..++++|||++...
T Consensus 70 ~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 70 LKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhh
Confidence 33457888888888888877554
No 156
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=29.18 E-value=54 Score=31.84 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=37.1
Q ss_pred eEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCch
Q 006508 478 HVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPE 553 (642)
Q Consensus 478 ~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~ 553 (642)
++.+||.+-+-+-.|.++|+..+..-.|-.-++-...+ -+++|.-+|.|||.-
T Consensus 18 LmPGDPlRAK~iAetfLe~~~~vnevR~mlgfTGtYKG-----------------------k~iSvmg~GmGipS~ 70 (236)
T COG0813 18 LMPGDPLRAKYIAETFLENAVCVNEVRGMLGFTGTYKG-----------------------KKISVMGHGMGIPSI 70 (236)
T ss_pred ecCCCCchHHHHHHHHHhhhhhhhhhcchhcccceecC-----------------------cEEEEEEecCCCccH
Confidence 45689999999999999999997644433333322222 458888888888753
No 157
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=29.10 E-value=3.9e+02 Score=23.31 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 006508 172 VRMLTQEIRKSLDRHTILYTT 192 (642)
Q Consensus 172 l~~lt~~i~~s~d~~~il~~~ 192 (642)
..++.+++..-...+.|++.+
T Consensus 83 ~~dlkqeV~dLss~eRIldiA 103 (120)
T COG4839 83 NDDLKQEVKDLSSPERILDIA 103 (120)
T ss_pred hhhHHHHHHHhccHHHHHHHH
Confidence 444556666556667776654
No 158
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=28.34 E-value=93 Score=26.89 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 006508 82 IQFIAFIVLCGLTHLLNG 99 (642)
Q Consensus 82 ~~~~~~i~~~~~~~~~~~ 99 (642)
+.|++.|+++-.+|.+-+
T Consensus 62 iffavcI~l~~~s~~lLI 79 (118)
T PF10856_consen 62 IFFAVCILLICISAILLI 79 (118)
T ss_pred EehHHHHHHHHHHHHhhe
Confidence 334444444444444444
No 159
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=28.23 E-value=9e+02 Score=27.37 Aligned_cols=10 Identities=40% Similarity=0.454 Sum_probs=4.1
Q ss_pred HHHHHHHhhH
Q 006508 53 FLIAVAYFSI 62 (642)
Q Consensus 53 ~lia~a~~~i 62 (642)
.+|+++.|..
T Consensus 114 ~~i~i~a~~~ 123 (952)
T TIGR02921 114 IGIAIAAFAA 123 (952)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 160
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.99 E-value=4.5e+02 Score=26.71 Aligned_cols=87 Identities=14% Similarity=0.184 Sum_probs=46.0
Q ss_pred hhhHHHHHHHhhHhHHHHHH--------HhcCCCCchHHHHHH--HHHHHHHh----------hHHHHHHHhcCchhHHH
Q 006508 50 VSDFLIAVAYFSIPVELLYF--------ISCSNVPFKWVLIQF--IAFIVLCG----------LTHLLNGWTYGPHSFQL 109 (642)
Q Consensus 50 ~sd~lia~a~~~i~~~l~~~--------~~~~~~~~~~~~~~~--~~~i~~~~----------~~~~~~~~~~~~~~~~~ 109 (642)
..||+.|+.||-+=+--.|. .-|.|-.|+.+.|.| ..=++.|. ++-+++........
T Consensus 162 ~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~qAvgf~g~~~~G~i~ai~~~~~~--- 238 (313)
T KOG3088|consen 162 GTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVFQAVGFPGWGLCGWIPAIDVLSGN--- 238 (313)
T ss_pred chhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHccCCcchhhhhhHhhccCcc---
Confidence 46889999998876655553 223444444443333 32233331 11222222222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhh
Q 006508 110 MLSLTVFKILTALVSCATSITLITLIPLLLK 140 (642)
Q Consensus 110 ~~~~~~~~~~ta~v~~~~ai~l~~lip~~l~ 140 (642)
.+.++..++.+..+++.++..+.++.+.-.
T Consensus 239 -i~v~i~m~i~a~~Ft~~av~~i~~i~kVh~ 268 (313)
T KOG3088|consen 239 -IAVGILMLIGAGLFTLEAVLSIWVLQKVHS 268 (313)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134677788888888888777766544433
No 161
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=27.92 E-value=3.1e+02 Score=21.85 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=8.1
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 006508 175 LTQEIRKSLDRHTILYTT 192 (642)
Q Consensus 175 lt~~i~~s~d~~~il~~~ 192 (642)
|-.++..-.+++.|-+.+
T Consensus 50 L~~ei~~l~~~~rIe~~A 67 (85)
T TIGR02209 50 LQLEVAELSRHERIEKIA 67 (85)
T ss_pred HHHHHHHHcCHHHHHHHH
Confidence 334444444555544433
No 162
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=27.86 E-value=2.7e+02 Score=30.61 Aligned_cols=94 Identities=14% Similarity=0.019 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcc---cCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCC---CCCchhhhhccccc
Q 006508 489 VILHMVGSLLNC---NSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEG---GSQPEVSTSAAQLG 562 (642)
Q Consensus 489 vl~NLl~NAik~---~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~---Gi~~~~~~~if~~f 562 (642)
++..++-||+-| +..++.|.|.+..+ +++|...|. |+.++.+.+- .++
T Consensus 274 alREai~NAv~HRDYs~~~~~v~I~iydD-------------------------RieI~NPGgl~~gi~~~~l~~~-~s~ 327 (467)
T COG2865 274 ALREAIINAVIHRDYSIRGRNVHIEIYDD-------------------------RIEITNPGGLPPGITPEDLLKG-RSK 327 (467)
T ss_pred HHHHHHHHHHHhhccccCCCceEEEEECC-------------------------eEEEECCCCCCCCCChhHcccC-CCc
Confidence 788888888865 44555888888654 266776663 4444443331 122
Q ss_pred cccCC--------CCCCCCcchHHHHHHHHHHcCC-EEEEEecCCCCcEEEEEEEEecc
Q 006508 563 IRRIG--------NEGIEDRMSFSVCKKLVQLMQG-NIWMVPSSHGFAQSMGLVLRFQL 612 (642)
Q Consensus 563 ~~~~~--------~~~~G~GLGL~i~k~iv~~~gG-~I~v~s~~~g~Gt~f~i~LP~~~ 612 (642)
.|..- .--..-|-|+.-++..++.||. ....... ...|++.++...
T Consensus 328 ~RNp~LA~~l~~~~liE~~GSGi~rm~~~~~~~gl~~p~f~~~----~~~~~~~~~~~~ 382 (467)
T COG2865 328 SRNPVLAKVLRDMGLIEERGSGIRRMFDLMEENGLPKPEFEED----NDYVTVILHGKG 382 (467)
T ss_pred ccCHHHHHHHHHhhhHHHhCccHHHHHHHHHHcCCCCceeecc----CCeEEEEEeccc
Confidence 11110 0002456788889999999887 3444433 235666666543
No 163
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.30 E-value=4.4e+02 Score=23.30 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhhhHhhhh
Q 006508 123 VSCATSITLITLIPLLLKVK 142 (642)
Q Consensus 123 v~~~~ai~l~~lip~~l~~~ 142 (642)
+.++++++++.++-++..-+
T Consensus 4 i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 34444455555544444433
No 164
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=27.11 E-value=1.1e+03 Score=27.71 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=24.3
Q ss_pred HHHhhhHHHHHHHhhHhHHHHHHHhcCCCCc
Q 006508 47 TQKVSDFLIAVAYFSIPVELLYFISCSNVPF 77 (642)
Q Consensus 47 ~~~~sd~lia~a~~~i~~~l~~~~~~~~~~~ 77 (642)
-+++..+++++.+|++...+..++....+.+
T Consensus 54 ~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~ 84 (701)
T TIGR01667 54 TGRLKNLIITLSCFSIASFLVQLLFPKPWLF 84 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4678899999999999999999876444333
No 165
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.91 E-value=5.9e+02 Score=24.67 Aligned_cols=78 Identities=18% Similarity=0.100 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhCCcEEEEEeecCCCCeeEEE
Q 006508 142 KVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLT 220 (642)
Q Consensus 142 ~~~e~~l~~~~~~l~~e~~~~~~~~~~~~~l~~lt~~i~~s~d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~ 220 (642)
..+..+|.+....++++..++.+-++....+..-.+.+....+...-....++.+...+.- .|++--.+-.+..+.++
T Consensus 54 ~~~~~~L~~e~~~l~~~~aei~~l~~~~~~~~qr~q~~~~~q~~r~~~s~~le~L~~~lP~-~v~ltsL~~~g~~l~l~ 131 (206)
T COG3166 54 QQRNALLTTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQKRAGWSVLLEQLANLLPE-SVWLTSLKQQGDPLELS 131 (206)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcccchHHHHHHHHHHhCCC-ceEEeeeeccCCcEEEE
Confidence 3455566666677777777776666665554444444433333333334456677777763 44444333334444433
No 166
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=26.01 E-value=9.3e+02 Score=27.29 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHH
Q 006508 114 TVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTL 193 (642)
Q Consensus 114 ~~~~~~ta~v~~~~ai~l~~lip~~l~~~~~e~~l~~~~~~l~~e~~~~~~~~~~~~~l~~lt~~i~~s~d~~~il~~~~ 193 (642)
....+.++.-++..++++.-+.-.-+....|...++.-.++|+.++.++...-. +.=..+..+|..--+.+..++.+-
T Consensus 295 ~~~~~~~~~~l~~~~~l~~~~~~Rr~~~~~r~~~~~~a~~eLE~rV~eRTadL~--~~n~~l~~EIaer~~ae~~LR~~Q 372 (603)
T COG4191 295 RTARLAAILTLALLALLLALWLRRRRRARLRLAELQEARAELERRVEERTADLT--RANARLQAEIAEREQAEAALRRAQ 372 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555666666554322211 112235556665556666666666
Q ss_pred HHHHhh
Q 006508 194 VELSNT 199 (642)
Q Consensus 194 ~~l~~~ 199 (642)
.++.+.
T Consensus 373 deLvQA 378 (603)
T COG4191 373 DELVQA 378 (603)
T ss_pred HHHHHH
Confidence 665554
No 167
>PF03472 Autoind_bind: Autoinducer binding domain; InterPro: IPR005143 This domain binds N-acyl homoserine lactones (AHLs), which are also known as autoinducers. These are small, diffusible molecules used as communication signals in a large variety of proteobacteria. It is almost always found in association with the DNA-binding LuxR domain (IPR000792 from INTERPRO). The autoinducer binding domain forms the N-terminal region of the protein, while the DNA-binding domain forms the C-terminal region. In most cases, binding of AHL by this N-terminal domain leads to unmasking of the DNA-binding domain, allowing it to bind DNA and activate transcription []. In rare cases, some LuxR proteins such as EsaR, act as repressors []. In these proteins binding of AHL to this domain leads to inactivation of the protein as a transcriptional regulator. A large number of processes have been shown to be regulated by LuxR proteins, including bioluminescence, production of virulence factors in plant and animal pathogens, antibiotic production and plasmid transfer. Structural studies of TraR from Agrobacterium tumefaciens [, ] show that the functional protein is a homodimer. Binding of the cognate AHL is required for protein folding, resistance to proteases and dimerisation. The autoinducer binding domain binds its cognate AHL in an alpha/beta/alpha sandwich and provides an extensive dimerisation surface, though residues from the C-terminal region also make some contribution to dimerisation. The autoinducer binding domain is also required for interaction with RpoA, allowing transcription to occur []. There are some proteins which consist solely of the autoinducer binding domain. The function of these is not known, but TrlR from Agrobacterium has been shown to inhibit the activity of TraR by the formation of inactive heterodimers [].; PDB: 3SZT_A 1H0M_A 1L3L_B 2Q0O_B 2UV0_F 3IX8_A 3IX4_C 3IX3_A 3JPU_D 3QP8_A ....
Probab=24.67 E-value=4.7e+02 Score=22.78 Aligned_cols=101 Identities=17% Similarity=0.068 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhCCcEEEEEeecCCCCeeEEE---EEecCCCCCC-CCCceecCChhHHHHhhcCCceEeCCCchhhh--
Q 006508 189 LYTTLVELSNTLGLQNCAVWMPNEIKTEMNLT---HQLNGRNYSD-MCSSIPITDQDVVRIKGSDGVNILGPDSELAA-- 262 (642)
Q Consensus 189 l~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-- 262 (642)
+...+..+.+.+|.+.+++...........-. ..+...+... ........||.+..+..+..+...........
T Consensus 5 l~~~l~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~p~~w~~~Y~~~~~~~~DPv~~~~~~~~~p~~W~~~~~~~~~~ 84 (149)
T PF03472_consen 5 LWDLLERLAARLGFDRFAYGAPSPDPRGDSDFLLISNYPDEWLEHYEERGYFRIDPVVRHARRSSGPFFWSDLFERDALS 84 (149)
T ss_dssp HHHHHHHHHHCTTTSEEEEEEEETTSCECEEEEEEESS-HHHHHHHHHTTGGGT-HHHHHHCHTSSEEEEECHCTSSSSS
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCCCCCCccEEEEecCCHHHHHHHHHcCCcCCCHHHHHHHhCCCCEEEccchhhhhhh
Confidence 34556777888899988777444433322211 1222211110 11234456788888888888877744333211
Q ss_pred ----hccCCcccCCceeEEEeeeeecccccC
Q 006508 263 ----ASSGESVESGPVAAIRMPMLRVSNFKG 289 (642)
Q Consensus 263 ----~~~~~~~~~g~~~~i~~Pl~~~~~~~g 289 (642)
.......+.|....+++|+.......|
T Consensus 85 ~~~~~~~~~a~~~Gl~~G~~~p~~~~~g~~~ 115 (149)
T PF03472_consen 85 PEQRRFFDEARDFGLRSGVSVPLHGPDGRFG 115 (149)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEEEECCGCEE
T ss_pred HHHHHHHHHHHHcCCCceEEEEeEcCCCCEE
Confidence 111122357889999999986554434
No 168
>COG4420 Predicted membrane protein [Function unknown]
Probab=24.52 E-value=6.2e+02 Score=24.07 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=6.0
Q ss_pred HhcCchhHHH
Q 006508 100 WTYGPHSFQL 109 (642)
Q Consensus 100 ~~~~~~~~~~ 109 (642)
+.+.|+||.+
T Consensus 82 ~~wDpyPFi~ 91 (191)
T COG4420 82 LAWDPYPFIL 91 (191)
T ss_pred CcCCCccHHH
Confidence 3456777754
No 169
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=24.49 E-value=3.5e+02 Score=24.12 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006508 115 VFKILTALVSCATSITLI 132 (642)
Q Consensus 115 ~~~~~ta~v~~~~ai~l~ 132 (642)
-..++.=.+.+.+|.+++
T Consensus 75 Gaell~E~fiF~Va~~li 92 (134)
T PF07047_consen 75 GAELLGEAFIFSVAAGLI 92 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344554444444444433
No 170
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=24.23 E-value=2e+02 Score=23.12 Aligned_cols=19 Identities=5% Similarity=0.254 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhhhhHH
Q 006508 368 QARNAFQKVMSNGMRRPMH 386 (642)
Q Consensus 368 ~~~~~~l~~isHeLrtPL~ 386 (642)
..+.+|...|..||+||..
T Consensus 28 ~~~~~F~~AL~DDLNTp~A 46 (81)
T cd07955 28 ALVARLREALADDLDTPKA 46 (81)
T ss_pred HHHHHHHHHHHhhCChHHH
Confidence 4668999999999999965
No 171
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.12 E-value=6e+02 Score=23.83 Aligned_cols=12 Identities=8% Similarity=0.324 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhH
Q 006508 83 QFIAFIVLCGLT 94 (642)
Q Consensus 83 ~~~~~i~~~~~~ 94 (642)
.+|..++++|.+
T Consensus 13 ilgilli~~gI~ 24 (191)
T PF04156_consen 13 ILGILLIASGIA 24 (191)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 172
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.98 E-value=8.3e+02 Score=25.40 Aligned_cols=28 Identities=7% Similarity=0.113 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 006508 403 DQRMIVETMMKSSNVLSTLISDVMDNSP 430 (642)
Q Consensus 403 ~~~~~l~~i~~~~~~l~~li~~ll~~s~ 430 (642)
..+.++..+....+.|.--+.++|.+..
T Consensus 198 kRQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 198 KRQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456888888888888888888887765
No 173
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=23.72 E-value=51 Score=32.84 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=23.3
Q ss_pred CCCcchHHHHHHHHHHcCCEEEEEecCCCCcEEEEEEEEeccC
Q 006508 571 IEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 571 ~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
..+||||+||+++++. ++...++++.+-....
T Consensus 11 anSglGl~i~~RLl~~-----------~De~~~ltl~ltcR~~ 42 (341)
T KOG1478|consen 11 ANSGLGLAICKRLLAE-----------DDENVRLTLCLTCRNM 42 (341)
T ss_pred CCCcccHHHHHHHHhc-----------cCCceeEEEEEEeCCh
Confidence 3689999999999876 2335677777776543
No 174
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=23.23 E-value=3.3e+02 Score=20.49 Aligned_cols=28 Identities=11% Similarity=0.341 Sum_probs=22.6
Q ss_pred CCchHHHHHHHHHHHHHhhHHHHHHHhc
Q 006508 75 VPFKWVLIQFIAFIVLCGLTHLLNGWTY 102 (642)
Q Consensus 75 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 102 (642)
.....+.+.+|...+..|..++...+.-
T Consensus 19 ~~~~~~~~i~g~~~i~~Gi~~l~~~~~~ 46 (72)
T PF03729_consen 19 ASLAALAIILGIWLIISGIFQLISAFRR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677888999999999999888884
No 175
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=23.22 E-value=4.3e+02 Score=26.95 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 334 SHAAVLEESQHMREKLEEQNRALQQAQK 361 (642)
Q Consensus 334 ~~a~l~~e~~~~~~~l~~~~~~L~~a~~ 361 (642)
....+++|-+++++++.+.+.+++...+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~ 94 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQ 94 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666555444444433
No 176
>COG4377 Predicted membrane protein [Function unknown]
Probab=22.79 E-value=1.7e+02 Score=28.03 Aligned_cols=26 Identities=12% Similarity=0.345 Sum_probs=19.9
Q ss_pred HHHHhhHhHHHHHHHhcC-CCCchHHH
Q 006508 56 AVAYFSIPVELLYFISCS-NVPFKWVL 81 (642)
Q Consensus 56 a~a~~~i~~~l~~~~~~~-~~~~~~~~ 81 (642)
|++..++|++..++++|+ +...+...
T Consensus 15 aiall~~pIG~i~w~krky~~~l~v~g 41 (258)
T COG4377 15 AIALLAFPIGSIWWAKRKYQINLAVLG 41 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 788899999999998866 65444444
No 177
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=21.50 E-value=1.8e+02 Score=28.70 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=36.2
Q ss_pred eEEecHHHHHHHHHHHHHHhhcccCCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCch
Q 006508 478 HVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPE 553 (642)
Q Consensus 478 ~v~~D~~~l~qvl~NLl~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~ 553 (642)
.+.+||.|..++-. +++|+.+-....+-.+..-...+ -.+.|.-+|+|-|..
T Consensus 21 ilpGdP~R~~~iA~-lld~~~~va~~Ref~~~~g~~~g-----------------------~~v~v~StGIGgPSa 72 (248)
T COG2820 21 ILPGDPERVEKIAK-LLDNPVLVASNREFRTYTGTYNG-----------------------KPVTVCSTGIGGPSA 72 (248)
T ss_pred EecCCHHHHHHHHH-HhccchhhhhccceEEEEEEEcC-----------------------eEEEEEecCCCCchH
Confidence 46799999998877 88999884333334434333332 458899999997764
No 178
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=21.49 E-value=1.5e+02 Score=34.51 Aligned_cols=51 Identities=8% Similarity=0.121 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHHHhhc-cc-CCCcEEEEEEEEecCCCCcccccccccccccCCCceEEEEEEEECCCCCCchhh
Q 006508 482 DERRVFQVILHMVGSLLN-CN-SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVS 555 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik-~~-~~~g~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~~~~ 555 (642)
-..-+.+|+..++.||.. -. +.-..|.+.+..+. -.++|.+||.|||-+..
T Consensus 50 ~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~-----------------------~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 50 YVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEK-----------------------NEISVYNNGKGIPVTIH 102 (842)
T ss_pred cCCcHHHHHHHHhhcccccccCCCcceeEEEEccCC-----------------------CEEEEEeCCCcceeeec
Confidence 334588899999999987 11 22245556665544 34899999999986654
No 179
>COG4960 CpaA Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.23 E-value=1.5e+02 Score=27.43 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=30.8
Q ss_pred hHHHHHHHhhHhHHHHHHH----hcCCCCchHHHHHHHHHHHHHhhHHH
Q 006508 52 DFLIAVAYFSIPVELLYFI----SCSNVPFKWVLIQFIAFIVLCGLTHL 96 (642)
Q Consensus 52 d~lia~a~~~i~~~l~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (642)
|...+...++.|..+.+.. +.+.+||+.++.++.+|+++.-..|.
T Consensus 2 ~~~~~~~~l~~~~~~~~aa~sDi~s~~IpN~lv~~ll~~~~i~a~~~~~ 50 (168)
T COG4960 2 DMIIASLFLIFPVLLVFAAYSDIRSRTIPNRLVLVLLLAFAILAPVAGM 50 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHcCC
Confidence 4566777777787777753 33467999999888888766544443
No 180
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.78 E-value=6e+02 Score=22.54 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhhHhhhhhHH
Q 006508 123 VSCATSITLITLIPLLLKVKVRE 145 (642)
Q Consensus 123 v~~~~ai~l~~lip~~l~~~~~e 145 (642)
+.+++++.++.+|-++..-+.+.
T Consensus 13 igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 13 IGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHcchhhhh
Confidence 33445555555555555544433
No 181
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=20.32 E-value=3.1e+02 Score=27.30 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=43.3
Q ss_pred eEEEEeeCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006508 301 ILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQK 361 (642)
Q Consensus 301 i~vl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~a~~ 361 (642)
-.++.......++=...-..+++.+...+...++...+.++.++.++++++..++++++.+
T Consensus 172 a~~ll~et~~~~PDP~AAa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq~~~~~~ 232 (244)
T COG1938 172 ALVLLAETFGDRPDPRAAARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEE 232 (244)
T ss_pred eEEEeccccCCCCChHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555445567788888888888888888888888888888777666665544
Done!