Query 006508
Match_columns 642
No_of_seqs 433 out of 3650
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 18:35:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006508.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2135-2139//hhsearch_pdb/006508hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 1.0 1 1 277.1 30.5 229 363-613 13-250 (258)
2 4ew8_A Sensor protein DIVL; si 1.0 1 1 264.7 29.9 234 356-615 26-260 (268)
3 1gkz_A [3-methyl-2-oxobutanoat 1.0 1 1 262.1 27.5 228 365-616 116-378 (388)
4 3jz3_A Sensor protein QSEC; he 1.0 1 1 257.3 13.3 218 370-614 2-220 (222)
5 2btz_A Pyruvate dehydrogenase 1.0 1 1 254.3 25.0 218 372-614 97-353 (394)
6 2q8g_A [pyruvate dehydrogenase 1.0 1 1 253.8 26.1 218 370-613 106-365 (407)
7 2e0a_A Pyruvate dehydrogenase 1.0 1 1 251.5 27.6 217 372-613 97-352 (394)
8 3a0r_A Sensor protein; four he 1.0 1 1 248.2 23.7 214 369-612 131-346 (349)
9 1y8o_A [pyruvate dehydrogenase 1.0 1 1 246.0 26.1 217 371-613 119-376 (419)
10 3d36_A Sporulation kinase B; G 1.0 1 1 240.9 24.9 218 368-616 12-230 (244)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=1.00 E-value=1 Score=277.10 Aligned_cols=229 Identities=15% Similarity=0.190 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 999999999999999853343699999999987116---99977999999999999999999999986076678985413
Q 006508 363 ALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV---NLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLE 439 (642)
Q Consensus 363 ~~~~~~~~~~ll~~isHeLrtPL~~I~g~~~lL~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~g~~~l~ 439 (642)
..+.++.+..|++.++|||||||++|.++++++.+. ...++.+++++.|.+.+.++..++++++++++++.+...+.
T Consensus 13 l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 92 (258)
T 2c2a_A 13 LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQIN 92 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999987003415878999999999984224789999999999999999999999999999988527886676
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCC---CEEEEEEEEECC
Q ss_conf 45431899999999999999862495699986799997077248899999999999750336999---679999997159
Q 006508 440 IRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR---GTVLFRVVSENG 516 (642)
Q Consensus 440 ~~~~~L~~li~~~~~~~~~~~~~~~i~i~~~i~~~lp~~v~~D~~~l~qvl~NLi~NAik~~~~~---g~I~i~v~~~~~ 516 (642)
.+++++.+++++++..++..+..+++.+.++.+...+..+.+|+.++.|++.||+.||+||++.+ +.|.+.+...++
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~ 172 (258)
T 2c2a_A 93 REKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDG 172 (258)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETT
T ss_pred CCEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
T ss_conf 61355999999999999999997696798504889882587499999999999999898527478986369999954798
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 8775652111124466899429999998789999930011002365125799---9998753399999999980999999
Q 006508 517 SQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGN---EGIEDRMSFSVCKKLVQLMQGNIWM 593 (642)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~~G~GLGL~i~k~iv~~~gG~I~v 593 (642)
.+.+.|+|+|+||+++...++|++|++.... ...|+||||++||++++.|||+|++
T Consensus 173 ---------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v 231 (258)
T 2c2a_A 173 ---------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV 231 (258)
T ss_dssp ---------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEE
T ss_pred ---------------------EEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf ---------------------69999996589889789886626651578887779997615799999999986998999
Q ss_pred EECCCCCCEEEEEEEEECCC
Q ss_conf 84389982799999973059
Q 006508 594 VPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 594 ~s~~~g~Gt~f~i~LP~~~~ 613 (642)
+|. +|.||+|+++||....
T Consensus 232 ~s~-~~~Gt~f~i~lP~~~~ 250 (258)
T 2c2a_A 232 ESE-VGKGSRFFVWIPKDRA 250 (258)
T ss_dssp EEE-TTTEEEEEEEEECCC-
T ss_pred EEC-CCCCCEEEEEEECCCC
T ss_conf 863-8998289999607877
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=1.00 E-value=1 Score=264.74 Aligned_cols=234 Identities=20% Similarity=0.280 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999999998533436999999999871169-99779999999999999999999999860766789
Q 006508 356 LQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (642)
Q Consensus 356 L~~a~~~~~~~~~~~~~ll~~isHeLrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~g 434 (642)
+++..++..+.++.+..|++.++||+||||++|.++++++.+.. .+++.+++++.+.+..+++..++++++++++.+.+
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999988987528999999999986266898899999999999999999999999999986447
Q ss_pred CCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf 85413454318999999999999998624956999867999970772488999999999997503369996799999971
Q 006508 435 RFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE 514 (642)
Q Consensus 435 ~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~i~~~i~~~lp~~v~~D~~~l~qvl~NLi~NAik~~~~~g~I~i~v~~~ 514 (642)
...+...++++.+++.+++..+...+..+++.+.++++.+.+ .+.+|+..+.+|+.||+.||++|...+|.|.|.+...
T Consensus 106 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~ 184 (268)
T 4ew8_A 106 EMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA 184 (268)
T ss_dssp CCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-EEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 761266633699999999999876542038249998188782-6856999999999999999997189997799999966
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 59877565211112446689942999999878999993001100236512579999987533999999999809999998
Q 006508 515 NGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMV 594 (642)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~ 594 (642)
++ .+.+.|.|+|+|++++...++|++|++... .|+|+||++|+++++.|||+|+++
T Consensus 185 ~~---------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~---~g~GlGL~i~~~~~~~~gG~i~i~ 240 (268)
T 4ew8_A 185 LG---------------------EVRLDVSDTGRGVPFHVQAHIFDRFVGRDR---GGPGLGLALVKALVELHGGWVALE 240 (268)
T ss_dssp SS---------------------EEEEEEEESSCCCCHHHHTTTTSTTCCCSS---CCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred CC---------------------EEEEEEECCCCCCCHHHHHHHHHHHHCCCC---CCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 98---------------------799999738999898999988889866899---998433999999999839989999
Q ss_pred ECCCCCCEEEEEEEEECCCCC
Q ss_conf 438998279999997305999
Q 006508 595 PSSHGFAQSMGLVLRFQLRPS 615 (642)
Q Consensus 595 s~~~g~Gt~f~i~LP~~~~~~ 615 (642)
+. +|.|++|++.||....+.
T Consensus 241 s~-~~~Gt~~~i~lP~~~~~~ 260 (268)
T 4ew8_A 241 SE-PGNGSTFTCHLPETQQPG 260 (268)
T ss_dssp EC-TTSCEEEEEEEECCC---
T ss_pred EC-CCCCEEEEEEECCCCCCC
T ss_conf 66-999779999936888988
No 3
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=1.00 E-value=1 Score=262.10 Aligned_cols=228 Identities=8% Similarity=0.051 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 9999999999999853343699999-999987116999779999999999999999999999860766789854134543
Q 006508 365 MASQARNAFQKVMSNGMRRPMHSIL-GLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSF 443 (642)
Q Consensus 365 ~~~~~~~~ll~~isHeLrtPL~~I~-g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~g~~~l~~~~~ 443 (642)
+.++.+..+++.++||+||||+.|. |+.+++.....+++.+++++.+..+..++..++++++++++.+.+...+..+++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf 89999999999999874328999999999998622682889999999999899999999999987245898201023788
Q ss_pred EHHHHHHHHHHHHHHHHHHC---CCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCC--------EEEEEEE
Q ss_conf 18999999999999998624---956999867999970772488999999999997503369996--------7999999
Q 006508 444 RLHAMIKEAACLARCLSIYR---GFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG--------TVLFRVV 512 (642)
Q Consensus 444 ~L~~li~~~~~~~~~~~~~~---~i~i~~~i~~~lp~~v~~D~~~l~qvl~NLi~NAik~~~~~g--------~I~i~v~ 512 (642)
++.+++++++..++..+..+ .+.+.++.+.+ ..+.+|+..+.||+.||+.||+||+.+++ .|.|.+.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~--~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA--ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT--CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC--CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
T ss_conf 8999999999999999998518997079970478--71565489999999999999999855015677888998899999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCC-----------------------
Q ss_conf 715987756521111244668994299999987899999300110023651257999-----------------------
Q 006508 513 SENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNE----------------------- 569 (642)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~----------------------- 569 (642)
..++ ++.|.|+|+|+||+++.++++|++|++.....
T Consensus 274 ~~~~---------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (388)
T 1gkz_A 274 NNDV---------------------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGP 332 (388)
T ss_dssp ECSS---------------------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------C
T ss_pred ECCC---------------------EEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
T ss_conf 4798---------------------7999999807886978988763844505788655443221000001245567898
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEECCCCCC
Q ss_conf 99875339999999998099999984389982799999973059999
Q 006508 570 GIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSX 616 (642)
Q Consensus 570 ~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~~~ 616 (642)
..|+||||+|||.+++.|||+|+++|. +|.|++|++.||.......
T Consensus 333 ~~G~GLGL~i~r~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~~~~ 378 (388)
T 1gkz_A 333 MHGFGFGLPTSRAYAEYLGGSLQLQSL-QGIGTDVYLRLRHIDGREE 378 (388)
T ss_dssp CSCSSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEECSSSCCC
T ss_pred CCCCCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCCCCC
T ss_conf 687267899999999996997899963-8984799999538998888
No 4
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=1.00 E-value=1 Score=257.33 Aligned_cols=218 Identities=10% Similarity=0.095 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHH
Q ss_conf 9999999985334369999999998711699-977999999999999999999999986076678985413454318999
Q 006508 370 RNAFQKVMSNGMRRPMHSILGLLSIMQDVNL-NSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (642)
Q Consensus 370 ~~~ll~~isHeLrtPL~~I~g~~~lL~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~g~~~l~~~~~~L~~l 448 (642)
+..|++.++||+||||++|.++++++..... ++..+++++.+.+..+++..++++++++++.+.+....+.+++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 77899997687447599999999998643588478999999999999999999999998997413587667355779999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 99999999999862495699986799997077248899999999999750336999679999997159877565211112
Q 006508 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATW 528 (642)
Q Consensus 449 i~~~~~~~~~~~~~~~i~i~~~i~~~lp~~v~~D~~~l~qvl~NLi~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~ 528 (642)
+++++..+...+..+++.+.++++.+.+ .+.+|+..+.+|+.||+.||++|.++++.|.|.+...
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~~~-------------- 146 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI-KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNAD-------------- 146 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC-EEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEECSS--------------
T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCE-EEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC--------------
T ss_conf 9999998777899708758986088650-7736899999999999999987398998699997267--------------
Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 44668994299999987899999300110023651257999998753399999999980999999843899827999999
Q 006508 529 RQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 529 ~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
.+.|+|+|+||+++...++|++|++.......|+||||++||++++.|||+|+++|. +|+||+|++++
T Consensus 147 -----------~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~i~s~-~~~Gt~v~~~~ 214 (222)
T 3jz3_A 147 -----------NFIVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNA-EQGGFEAKVSW 214 (222)
T ss_dssp -----------EEEEECSCC--------------------------CTHHHHHHHHHHTTCEEECCBC-TTSSBEEEEEC
T ss_pred -----------EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECC-CCCCEEEEEEE
T ss_conf -----------389987899979999999986325089999995463599999999984998999728-99957999963
Q ss_pred EECCCC
Q ss_conf 730599
Q 006508 609 RFQLRP 614 (642)
Q Consensus 609 P~~~~~ 614 (642)
|....+
T Consensus 215 P~~~~~ 220 (222)
T 3jz3_A 215 LEHHHH 220 (222)
T ss_dssp CCC---
T ss_pred CCCCCC
T ss_conf 677998
No 5
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=1.00 E-value=1 Score=254.34 Aligned_cols=218 Identities=10% Similarity=0.089 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHCCCCC-CCCCCE
Q ss_conf 999999853343-----69999999998711699977----999999--999999999999999986076678-985413
Q 006508 372 AFQKVMSNGMRR-----PMHSILGLLSIMQDVNLNSD----QRMIVE--TMMKSSNVLSTLISDVMDNSPKDS-GRFPLE 439 (642)
Q Consensus 372 ~ll~~isHeLrt-----PL~~I~g~~~lL~~~~~~~~----~~~~l~--~i~~~~~~l~~li~~ll~~s~~e~-g~~~l~ 439 (642)
.+++.++||||| ||+.|.|+++++.+...++. .+++++ .+.+.+.++ ++++++++++.+. +..+..
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCC
T ss_conf 9999999999850220179999999999876057866689999999999985327999--99999998522246788764
Q ss_pred E----EEEEHHHHHHHHHHHHHHHHHH-----CCCEEEEEE---CCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCC--
Q ss_conf 4----5431899999999999999862-----495699986---7999970772488999999999997503369996--
Q 006508 440 I----RSFRLHAMIKEAACLARCLSIY-----RGFGFSIEV---DRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG-- 505 (642)
Q Consensus 440 ~----~~~~L~~li~~~~~~~~~~~~~-----~~i~i~~~i---~~~lp~~v~~D~~~l~qvl~NLi~NAik~~~~~g-- 505 (642)
. +++++.+++++++..++..+.. +++.+.++. +.. +..+.+|+..+.||+.||+.||+||+.+++
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 253 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQ-PIHMVYVPSHLYHMLFELFKNAMRATVESHES 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS-CCEEEECHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 02026887899999999999999999961789976999722678887-73899558999999999999999976502566
Q ss_pred -----EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCC--------CCCC
Q ss_conf -----799999971598775652111124466899429999998789999930011002365125799--------9998
Q 006508 506 -----TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGN--------EGIE 572 (642)
Q Consensus 506 -----~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--------~~~G 572 (642)
.|.|.+...++ ++.|.|+|+|+||+++.++++|++|++.... ...|
T Consensus 254 ~~~~~~I~I~~~~~~~---------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G 312 (394)
T 2btz_A 254 SLILPPIKVMVALGEE---------------------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAG 312 (394)
T ss_dssp CSCCCCEEEEEEECSS---------------------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC-------------
T ss_pred CCCCCCEEEEEEECCC---------------------EEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7889987999980798---------------------7999999679997979998985635667898776667798787
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEECCCC
Q ss_conf 753399999999980999999843899827999999730599
Q 006508 573 DRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 573 ~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
+||||+|||.+++.|||+|+++|. +|.|++|++.||.....
T Consensus 313 ~GLGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~~ 353 (394)
T 2btz_A 313 FGYGLPISRLYAKYFQGDLQLFSM-EGFGTDAVIYLKALSTD 353 (394)
T ss_dssp -CCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSTTT
T ss_pred CCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCCC
T ss_conf 447899999999995997899962-79856999996389877
No 6
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=1.00 E-value=1 Score=253.79 Aligned_cols=218 Identities=10% Similarity=0.084 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCC----CHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCC----C
Q ss_conf 99999999853343-----69999999998711699----9779999999--99999999999999986076678----9
Q 006508 370 RNAFQKVMSNGMRR-----PMHSILGLLSIMQDVNL----NSDQRMIVET--MMKSSNVLSTLISDVMDNSPKDS----G 434 (642)
Q Consensus 370 ~~~ll~~isHeLrt-----PL~~I~g~~~lL~~~~~----~~~~~~~l~~--i~~~~~~l~~li~~ll~~s~~e~----g 434 (642)
...|.+.+ ||||| ||+.|.|+++++..... .++.+++++. +.+.+.++ ++++++++++.+. +
T Consensus 106 ~~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~ 182 (407)
T 2q8g_A 106 IYDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPS 182 (407)
T ss_dssp HHHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------
T ss_pred HHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCC
T ss_conf 99999999-999864110259999999999876356866789999999999999999999--999999984543356788
Q ss_pred ---CCCCEEEEEEHHHHHHHHHHHHHHHHHHC-----CCEEEEEE---CCCCCCEEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ---85413454318999999999999998624-----95699986---79999707724889999999999975033699
Q 006508 435 ---RFPLEIRSFRLHAMIKEAACLARCLSIYR-----GFGFSIEV---DRSLPDHVMGDERRVFQVILHMVGSLLNCNSR 503 (642)
Q Consensus 435 ---~~~l~~~~~~L~~li~~~~~~~~~~~~~~-----~i~i~~~i---~~~lp~~v~~D~~~l~qvl~NLi~NAik~~~~ 503 (642)
......+++++.+++++++..++..+..+ ++.+.+++ +.. +..+.+|+.++.||+.||+.||+||+.+
T Consensus 183 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~v~~d~~~L~~il~NLl~NAik~t~~ 261 (407)
T 2q8g_A 183 HRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQ-PIQVVYVPSHLYHMVFELFKNAMRATME 261 (407)
T ss_dssp --CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS-CCEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 846225445778899999999999999999851789956999963478898-7279975999999999999999998761
Q ss_pred CC-------EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCC--------
Q ss_conf 96-------799999971598775652111124466899429999998789999930011002365125799--------
Q 006508 504 RG-------TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGN-------- 568 (642)
Q Consensus 504 ~g-------~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-------- 568 (642)
++ .|.|.+...++ .+.|.|+|+|+||+++.++++|++|++....
T Consensus 262 ~~~~~~~~~~I~I~~~~~~~---------------------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~ 320 (407)
T 2q8g_A 262 HHANRGVYPPIQVHVTLGNE---------------------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRA 320 (407)
T ss_dssp HSTTTCCCCCEEEEEEECSS---------------------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSC
T ss_pred CCCCCCCCCCEEEEEEECCC---------------------EEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 15667889977999996898---------------------799999966898897999988475550788877666677
Q ss_pred -CCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEECCC
Q ss_conf -999875339999999998099999984389982799999973059
Q 006508 569 -EGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 569 -~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
...|+||||+|||.+++.|||+|+++|. +|.|++|++.||....
T Consensus 321 ~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~ 365 (407)
T 2q8g_A 321 VPLAGFGYGLPISRLYAQYFQGDLKLYSL-EGYGTDAVIYIKALST 365 (407)
T ss_dssp CCSSCTTCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSGG
T ss_pred CCCCCCCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCC
T ss_conf 98787077889999999982997999974-8985699999778998
No 7
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=1.00 E-value=1 Score=251.52 Aligned_cols=217 Identities=11% Similarity=0.092 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHCCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HCCCCCCCCCCE
Q ss_conf 999999853343-----6999999999871169----9977999999--999999999999999986-076678985413
Q 006508 372 AFQKVMSNGMRR-----PMHSILGLLSIMQDVN----LNSDQRMIVE--TMMKSSNVLSTLISDVMD-NSPKDSGRFPLE 439 (642)
Q Consensus 372 ~ll~~isHeLrt-----PL~~I~g~~~lL~~~~----~~~~~~~~l~--~i~~~~~~l~~li~~ll~-~s~~e~g~~~l~ 439 (642)
.+++.++||||| ||+.|.|+++++.... ..++.+++++ .|.+.+.++ +++++++ +++. .+..+..
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCC-CCCCCCC
T ss_conf 9999999999863100078999999999866435755689999999999999899999--999999986144-6788873
Q ss_pred E----EEEEHHHHHHHHHHHHHHHHHHC-----CCEEEEEE--CCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCC---
Q ss_conf 4----54318999999999999998624-----95699986--7999970772488999999999997503369996---
Q 006508 440 I----RSFRLHAMIKEAACLARCLSIYR-----GFGFSIEV--DRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG--- 505 (642)
Q Consensus 440 ~----~~~~L~~li~~~~~~~~~~~~~~-----~i~i~~~i--~~~lp~~v~~D~~~l~qvl~NLi~NAik~~~~~g--- 505 (642)
. +++++.+++++++..++..+..+ ++.+.+++ .+..+..+.+|+.++.||+.||+.||+||+.+++
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 253 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQ 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 03015777799999999999999999851899966999722577898727997489999999999999999987315666
Q ss_pred ----EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCC---------CCCC
Q ss_conf ----799999971598775652111124466899429999998789999930011002365125799---------9998
Q 006508 506 ----TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGN---------EGIE 572 (642)
Q Consensus 506 ----~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---------~~~G 572 (642)
.|.|.+...++ ++.|.|+|+|+||+++.++++|++|++.... ...|
T Consensus 254 ~~~~~I~I~~~~~~~---------------------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G 312 (394)
T 2e0a_A 254 PSLTPIEVIVVLGKE---------------------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAG 312 (394)
T ss_dssp SSCCCEEEEEEECSS---------------------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSC
T ss_pred CCCCCEEEEEEECCC---------------------EEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 889987999995798---------------------79999996799959789878757676278987767677789787
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEECCC
Q ss_conf 75339999999998099999984389982799999973059
Q 006508 573 DRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 573 ~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
+||||+|||.+++.|||+|+++|. +|.|++|++.||....
T Consensus 313 ~GLGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~ 352 (394)
T 2e0a_A 313 FGYGLPISRLYAKYFQGDLNLYSL-SGYGTDAIIYLKALSS 352 (394)
T ss_dssp SSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSGG
T ss_pred CCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCC
T ss_conf 226899999999994997999954-8963799999679998
No 8
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=248.24 Aligned_cols=214 Identities=16% Similarity=0.239 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHH
Q ss_conf 9999999998533436999999999871169-997799999999999999999999998607667898541345431899
Q 006508 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHA 447 (642)
Q Consensus 369 ~~~~ll~~isHeLrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~g~~~l~~~~~~L~~ 447 (642)
.++.|++.++||+||||++|.++++++.+.. .+++.+++++.+.+.+.++..++++++++++. ...+...++++.+
T Consensus 131 ~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~~ 207 (349)
T 3a0r_A 131 ILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLNE 207 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCHHH
T ss_conf 9999998878876464999999999998630691899999999999999999999999998377---5556774257999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 99999999999986249569998679999707724889999999999975033699967999999715987756521111
Q 006508 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWAT 527 (642)
Q Consensus 448 li~~~~~~~~~~~~~~~i~i~~~i~~~lp~~v~~D~~~l~qvl~NLi~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~ 527 (642)
++++++..+...+..+++.+.++.+++.+ .+.+|+..+.||+.||+.||+||++++|.|.|.+...++.
T Consensus 208 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~~---------- 276 (349)
T 3a0r_A 208 LIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTK---------- 276 (349)
T ss_dssp HHHHHHHHHHHHHTTTTCCCEEEESCSCC-EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTE----------
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCC-EEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCE----------
T ss_conf 99999999999999769689995488884-5986899999999999999998655797799999955988----------
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEEEECCCCCCEEEEE
Q ss_conf 2446689942999999878999993001100236512579999987533999999999-809999998438998279999
Q 006508 528 WRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQ-LMQGNIWMVPSSHGFAQSMGL 606 (642)
Q Consensus 528 ~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~-~~gG~I~v~s~~~g~Gt~f~i 606 (642)
+.++|+|+|+||+++..+++|++|++... .|+||||++||++++ .|||.+++++. .+ |++|++
T Consensus 277 -----------~~i~v~D~G~Gi~~~~~~~if~~f~~~~~---~g~GlGL~i~~~~v~~~~gg~i~~~~~-~~-Gt~f~i 340 (349)
T 3a0r_A 277 -----------VRVSVWNSGPPIPEELKEKIFSPFFTTKT---QGTGLGLSICRKIIEDEHGGKIWTENR-EN-GVVFIF 340 (349)
T ss_dssp -----------EEEEEEEESCCCCGGGGTTTSSSCCCC---------CCCTHHHHHHHHTTCSBCCEEEC-SS-EEEEEE
T ss_pred -----------EEEEEEECCCCCCHHHHHHCCCCCCCCCC---CCCCCHHHHHHHHHHHHCCCEEEEEEC-CC-CEEEEE
T ss_conf -----------99999989999796799553888730799---983110999999999718977999807-99-479999
Q ss_pred EEEECC
Q ss_conf 997305
Q 006508 607 VLRFQL 612 (642)
Q Consensus 607 ~LP~~~ 612 (642)
.||...
T Consensus 341 ~lP~~~ 346 (349)
T 3a0r_A 341 EIPKTP 346 (349)
T ss_dssp EEESCT
T ss_pred EECCCC
T ss_conf 932897
No 9
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=1.00 E-value=1 Score=246.01 Aligned_cols=217 Identities=11% Similarity=0.076 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHCCCC----CHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCC-CCCCCCC
Q ss_conf 9999999853343699-----99999998711699----97799999999999--99999999999860766-7898541
Q 006508 371 NAFQKVMSNGMRRPMH-----SILGLLSIMQDVNL----NSDQRMIVETMMKS--SNVLSTLISDVMDNSPK-DSGRFPL 438 (642)
Q Consensus 371 ~~ll~~isHeLrtPL~-----~I~g~~~lL~~~~~----~~~~~~~l~~i~~~--~~~l~~li~~ll~~s~~-e~g~~~l 438 (642)
..|.+ ++|||||||+ .|.|+++++..... .++.+++++.+... +.++ ++++++.+++. +.+..+.
T Consensus 119 ~~f~~-~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~ 195 (419)
T 1y8o_A 119 DNFLQ-VLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPK 195 (419)
T ss_dssp HHHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTT
T ss_pred HHHHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCC
T ss_conf 99999-99998541166699999999999987466866689999999999998888999--9999999860224677877
Q ss_pred ----EEEEEEHHHHHHHHHHHHHHHHHH-----CCCEEEEEE---CCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCC-
Q ss_conf ----345431899999999999999862-----495699986---7999970772488999999999997503369996-
Q 006508 439 ----EIRSFRLHAMIKEAACLARCLSIY-----RGFGFSIEV---DRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG- 505 (642)
Q Consensus 439 ----~~~~~~L~~li~~~~~~~~~~~~~-----~~i~i~~~i---~~~lp~~v~~D~~~l~qvl~NLi~NAik~~~~~g- 505 (642)
..+++++.+++++++..++..+.. +++.+.++. +.. +..+.+|+.++.||+.||+.||+||+.+++
T Consensus 196 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 196 HIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDK-PIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS-CCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 545226768899999999999999999850889967999630477899-8489973999999999999999999875135
Q ss_pred -------EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCC---------C
Q ss_conf -------799999971598775652111124466899429999998789999930011002365125799---------9
Q 006508 506 -------TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGN---------E 569 (642)
Q Consensus 506 -------~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---------~ 569 (642)
.|.|.+...++ .+.|.|+|+|+||+++.++++|++|++.... .
T Consensus 275 ~~~~~~~~I~I~~~~~~~---------------------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~ 333 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLGKE---------------------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAP 333 (419)
T ss_dssp TCSSCCCCEEEEEEECSS---------------------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------C
T ss_pred CCCCCCCCEEEEEEECCC---------------------EEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 667789978999995798---------------------79999997999979899998837334168887766667788
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEECCC
Q ss_conf 99875339999999998099999984389982799999973059
Q 006508 570 GIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 570 ~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
..|+||||+|||.+++.|||+|+++|. +|.|++|++.||....
T Consensus 334 ~~G~GLGL~I~k~iv~~~gG~I~v~s~-~g~Gt~f~i~LP~~~~ 376 (419)
T 1y8o_A 334 LAGFGYGLPISRLYARYFQGDLKLYSM-EGVGTDAVIYLKALSS 376 (419)
T ss_dssp C--CTTHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESCGG
T ss_pred CCCEECCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCC
T ss_conf 687405899999999996997999964-8997799999658887
No 10
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=1.00 E-value=1 Score=240.93 Aligned_cols=218 Identities=15% Similarity=0.230 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHH
Q ss_conf 9999999999853343699999999987116999-779999999999999999999999860766789854134543189
Q 006508 368 QARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLN-SDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLH 446 (642)
Q Consensus 368 ~~~~~ll~~isHeLrtPL~~I~g~~~lL~~~~~~-~~~~~~l~~i~~~~~~l~~li~~ll~~s~~e~g~~~l~~~~~~L~ 446 (642)
+.++.|.+.++||+||||++|.++++++.+...+ ++.+++++.+.+..+++..++++++++++.+.+ ..+++++.
T Consensus 12 ~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~ 87 (244)
T 3d36_A 12 EAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVK 87 (244)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHH
T ss_conf 99999999866975467999999999987063580679999999999999999999999998731568----86312579
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCC
Q ss_conf 99999999999998624956999867999970772488999999999997503369996799999971598775652111
Q 006508 447 AMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWA 526 (642)
Q Consensus 447 ~li~~~~~~~~~~~~~~~i~i~~~i~~~lp~~v~~D~~~l~qvl~NLi~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~ 526 (642)
.++++++..+...+..+++.+.++.++ + .+.+|+..+.+++.||+.||++|.++++.|.|.+...++.
T Consensus 88 ~~l~~~~~~~~~~~~~~~i~~~~~~~~--~-~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~~--------- 155 (244)
T 3d36_A 88 LEIERVIDILRPLANMSCVDIQATLAP--F-SVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGR--------- 155 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEECCC--C-EEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTE---------
T ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCC--C-EEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCE---------
T ss_conf 999999999999987427287236887--3-6896799999999999999999646798189999985998---------
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEE
Q ss_conf 12446689942999999878999993001100236512579999987533999999999809999998438998279999
Q 006508 527 TWRQSSVDGDVYIRFEILLNEGGSQPEVSTSAAQLGIRRIGNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGL 606 (642)
Q Consensus 527 ~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i 606 (642)
+.|.|.|+|+|++++...++|++|++... ..|+|+||++|+++++.|||+|++++. ++.|++|++
T Consensus 156 ------------~~i~i~D~G~gi~~~~~~~if~~~~~~~~--~~g~GlGL~i~~~i~~~~gG~i~~~~~-~~~G~~~~i 220 (244)
T 3d36_A 156 ------------VLIRIADTGVGMTKEQLERLGEPYFTTKG--VKGTGLGMMVVYRIIESMNGTIRIESE-IHKGTTVSI 220 (244)
T ss_dssp ------------EEEEEEECSSCCCHHHHHHTTSTTCCSSG--GGCCSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEE
T ss_pred ------------EEEEEEECCCCCCHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCCEEEEE
T ss_conf ------------99999725899798999988563302789--887652599999999985998999966-999179999
Q ss_pred EEEECCCCCC
Q ss_conf 9973059999
Q 006508 607 VLRFQLRPSX 616 (642)
Q Consensus 607 ~LP~~~~~~~ 616 (642)
.||+...++.
T Consensus 221 ~lP~~~~~~~ 230 (244)
T 3d36_A 221 YLPLASSPSS 230 (244)
T ss_dssp EEECCC----
T ss_pred EECCCCCCCC
T ss_conf 9518999873
Done!