BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006510
         (642 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PQV|A Chain A, Cyclase Homolog
 pdb|3PQV|B Chain B, Cyclase Homolog
 pdb|3PQV|C Chain C, Cyclase Homolog
 pdb|3PQV|D Chain D, Cyclase Homolog
          Length = 365

 Score = 30.0 bits (66), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 201 KVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQ-----------LAEKDVQQIRVFGQ 249
           +VS +    +++G + +L +++    + A + R +           L  ++ Q  R+F +
Sbjct: 199 RVSPSLVNRMIDGAKKVLKSASCEVNITADVWRGENSGKSPGWGLTLVAENKQGWRIFSE 258

Query: 250 SIEDTGPSPKIIAAKLASSLIQLAETSGL 278
           +I D G  P+ I A +A  L++    SG+
Sbjct: 259 AIGDAGDVPEDIGASVAYHLLEEISKSGV 287


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,273,448
Number of Sequences: 62578
Number of extensions: 611046
Number of successful extensions: 1040
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1040
Number of HSP's gapped (non-prelim): 2
length of query: 642
length of database: 14,973,337
effective HSP length: 105
effective length of query: 537
effective length of database: 8,402,647
effective search space: 4512221439
effective search space used: 4512221439
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)