Query 006510
Match_columns 642
No_of_seqs 271 out of 848
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 00:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1193 Arginyl-tRNA-protein t 100.0 8E-127 2E-131 1003.4 22.9 504 17-639 3-511 (511)
2 PRK01305 arginyl-tRNA-protein 100.0 4.5E-70 9.7E-75 552.3 24.6 228 26-501 10-238 (240)
3 COG2935 Putative arginyl-tRNA: 100.0 9.6E-63 2.1E-67 493.1 21.8 232 24-502 9-246 (253)
4 PF04377 ATE_C: Arginine-tRNA- 100.0 1.2E-49 2.6E-54 369.3 14.1 127 347-496 1-128 (128)
5 PF04376 ATE_N: Arginine-tRNA- 99.9 6.3E-28 1.4E-32 207.5 5.9 76 29-105 4-80 (80)
6 PF13480 Acetyltransf_6: Acety 96.8 0.021 4.5E-07 51.4 11.5 69 402-480 73-141 (142)
7 COG5653 Protein involved in ce 88.8 3.3 7.2E-05 46.1 10.8 77 401-487 273-349 (406)
8 PF00583 Acetyltransf_1: Acety 86.9 2.3 5E-05 34.7 6.5 63 405-472 1-69 (83)
9 TIGR01575 rimI ribosomal-prote 81.9 18 0.00039 31.6 10.4 64 403-471 34-97 (131)
10 cd04301 NAT_SF N-Acyltransfera 79.5 9.5 0.00021 28.0 6.7 56 407-467 6-64 (65)
11 TIGR03019 pepcterm_femAB FemAB 75.8 14 0.00031 39.3 9.2 80 403-487 199-278 (330)
12 TIGR03827 GNAT_ablB putative b 69.2 74 0.0016 33.0 12.4 59 405-468 163-223 (266)
13 PLN02706 glucosamine 6-phospha 66.4 77 0.0017 29.0 10.7 58 408-470 63-127 (150)
14 PF13420 Acetyltransf_4: Acety 66.3 29 0.00063 31.8 7.9 62 407-473 58-122 (155)
15 PF03485 Arg_tRNA_synt_N: Argi 66.0 6 0.00013 34.1 3.0 50 217-290 35-84 (85)
16 PRK10140 putative acetyltransf 60.7 1.2E+02 0.0026 27.7 10.9 61 406-470 57-121 (162)
17 PRK07922 N-acetylglutamate syn 59.6 24 0.00052 34.1 6.2 57 407-468 53-110 (169)
18 PRK10975 TDP-fucosamine acetyl 59.4 37 0.0008 33.1 7.6 63 406-473 108-171 (194)
19 TIGR02382 wecD_rffC TDP-D-fuco 58.0 34 0.00074 33.3 7.1 63 406-473 105-168 (191)
20 PRK07757 acetyltransferase; Pr 57.5 33 0.00071 31.6 6.6 58 405-467 46-104 (152)
21 PRK03624 putative acetyltransf 57.5 46 0.00099 29.3 7.3 78 405-487 50-129 (140)
22 PRK10146 aminoalkylphosphonic 54.0 50 0.0011 29.7 7.1 50 405-456 52-109 (144)
23 PF13508 Acetyltransf_7: Acety 52.8 59 0.0013 26.7 6.7 48 400-447 3-50 (79)
24 KOG0045 Cytosolic Ca2+-depende 52.6 25 0.00054 41.6 5.9 57 396-456 114-170 (612)
25 TIGR01686 FkbH FkbH-like domai 50.9 2.3E+02 0.005 30.3 12.5 112 335-471 184-300 (320)
26 PF13673 Acetyltransf_10: Acet 48.5 1.8E+02 0.0038 25.0 10.1 47 404-454 48-95 (117)
27 PF04256 DUF434: Protein of un 48.0 9.3 0.0002 31.7 1.1 40 56-111 6-45 (58)
28 TIGR00124 cit_ly_ligase [citra 47.2 90 0.002 34.1 8.8 73 369-456 11-83 (332)
29 PF07395 Mig-14: Mig-14; Inte 46.5 13 0.00027 39.6 2.1 75 396-483 172-255 (264)
30 PTZ00330 acetyltransferase; Pr 44.2 2.4E+02 0.0052 25.4 10.9 51 406-456 58-115 (147)
31 PHA00673 acetyltransferase dom 41.5 1.2E+02 0.0025 29.9 7.7 54 403-456 58-118 (154)
32 cd02169 Citrate_lyase_ligase C 35.9 70 0.0015 34.5 5.7 55 405-468 11-65 (297)
33 PRK09491 rimI ribosomal-protei 35.6 1.5E+02 0.0033 27.0 7.3 60 404-468 44-103 (146)
34 TIGR02406 ectoine_EctA L-2,4-d 33.9 1.1E+02 0.0024 29.0 6.2 50 407-456 47-99 (157)
35 PF14542 Acetyltransf_CG: GCN5 32.7 1.6E+02 0.0035 25.2 6.4 53 404-456 3-55 (78)
36 PRK10314 putative acyltransfer 32.3 1.7E+02 0.0038 27.8 7.3 54 400-455 48-106 (153)
37 TIGR03103 trio_acet_GNAT GNAT- 30.9 5.7E+02 0.012 29.9 12.4 62 407-473 132-200 (547)
38 PF11191 DUF2782: Protein of u 30.7 89 0.0019 28.4 4.7 34 399-436 48-81 (105)
39 PF09924 DUF2156: Uncharacteri 30.2 62 0.0014 34.0 4.2 63 401-469 181-246 (299)
40 PF06478 Corona_RPol_N: Corona 25.3 19 0.00041 39.1 -0.7 47 586-636 130-176 (355)
41 PRK05279 N-acetylglutamate syn 25.3 2.1E+02 0.0045 32.1 7.4 57 405-466 339-397 (441)
42 PHA01807 hypothetical protein 25.0 2.1E+02 0.0046 27.7 6.5 76 405-485 58-138 (153)
43 COG3216 Uncharacterized protei 20.9 23 0.00049 35.7 -1.1 17 65-81 22-38 (184)
No 1
>KOG1193 consensus Arginyl-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-127 Score=1003.40 Aligned_cols=504 Identities=50% Similarity=0.850 Sum_probs=416.1
Q ss_pred CCCCcceEEeecCCCCCCCCCCCCCCCCceeeccccCCCCHHHHHHHHHhhhhccCCeeeccCCCCCCCCceeeeecCCC
Q 006510 17 SNRKGETVVGDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASD 96 (642)
Q Consensus 17 ~~~~~~SiV~~~g~~~~~CgYc~~~~~~~~s~g~~a~~lt~~~Yq~LidrGwRRSG~~~YKP~~~~tCcp~ytIRl~v~~ 96 (642)
++.+.+|||.++|+..+.||||++ .+.+.+||||++.||+.+||.||||||||||+|+|||+|.+||||||||||++.+
T Consensus 3 ~~~g~~siv~~~gs~~s~cgyck~-~~~s~ShGm~a~~ltv~dYq~LiD~GWRRSG~YlYKp~~~~TCCp~YTIRl~~~~ 81 (511)
T KOG1193|consen 3 GGGGSESIVDYLGSWKSTCGYCKS-ARESISHGMWAEHLTVNDYQRLIDRGWRRSGKYLYKPDMLKTCCPLYTIRLDPLE 81 (511)
T ss_pred CCCCCHhHHHhcccchhccccccc-ccccccccceeeeeeHHHHHHHHhhccccccceeeccCCCCccCCCeeEeechhc
Confidence 466789999999999999999998 5799999999999999999999999999999999999999999999999999999
Q ss_pred CCcChhHHHHHHhhcccccccccc-cCcccccchhhhhcCCCCCCCCCccCccccccccccCCccCchhHHHHHhhhhhh
Q 006510 97 FAPSKEQRRVSRRMQSVVYIPRFL-DGTVDVEKKSVELIKDPSTSNCNKVSSSVENNSLSHNNEENNKEEEILQFLSGQI 175 (642)
Q Consensus 97 FkpsKsQrrvlkr~~~~~~~~kfL-~g~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~l~~~i 175 (642)
|+|||+||||+|||+ +|| +|+..+++. ++ + ++++..+ ..++.+..+..++.+..|+++|
T Consensus 82 Fk~SKeqKrv~rr~~------rfL~~gk~~~~p~-e~-~----------~~~~~~~--~~a~~e~n~~~~~~~~~lSd~i 141 (511)
T KOG1193|consen 82 FKPSKEQKRVIRRMN------RFLADGKRPVKPV-ES-D----------VDGTADD--GAAKVEMNKKAEEGMKTLSDQI 141 (511)
T ss_pred ccccHHHHHHHHHHH------HHHhcCCCCCCcc-cc-c----------ccccccc--ccchhhhcccccccccchhhHH
Confidence 999999999999999 999 788766553 22 1 1111111 1122222223467777889999
Q ss_pred HHHHHHHhhhcccccCCcCccchhhhhhHHHHHhhhhccccccccchhHHHHHHHHHHHHHhhHHHHHHHhhcccccCCC
Q 006510 176 DNAVQLCIVRGQFLSGIQLPKASVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTG 255 (642)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~p~~~~k~v~~~~~k~~~~g~~~~~~~sn~~f~i~~~~~~a~~~~k~~~q~r~~~~~~~~~~ 255 (642)
+++++. .+++++..++||++++|. +|+++.++. . .....
T Consensus 142 ~~~vq~---------------~~v~el~sakrkkl~~g~---~~~~~~~~P-----------g------------~n~~r 180 (511)
T KOG1193|consen 142 KKAVQS---------------ESVAELFSAKRKKLAEGT---LYTSTAPEP-----------G------------SNKNR 180 (511)
T ss_pred Hhhhhh---------------hhHHHHHhhhcccccccc---eeeeeccCC-----------C------------CCccc
Confidence 887762 456678888899998875 677776542 0 12456
Q ss_pred CChHHHHHHHHHHHHhhhhcccccccccCCccchhhhhhhcccccccccccccccccccccccCccCCCCCCCccccCCC
Q 006510 256 PSPKIIAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDEDVHIGTVSKESAKTCESKGGCLKNSSEHPQAKRHK 335 (642)
Q Consensus 256 ~~~~~~~~kl~~~~~~~~~~~~~~~~~~~g~~n~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (642)
++++.+.+++...+.+.++.-.+.++.+.||+||...++.+.+.++.. +++.. .+...+|+
T Consensus 181 l~~e~~~e~~~~~~~k~~~~~~l~~~v~kgh~~~l~~~k~~~~~r~~~---------------sl~~~----~~~~~kh~ 241 (511)
T KOG1193|consen 181 LSKEEISEKKLSKMCKKGEQKNLDPKVAKGHINFLSSTKDASSQRTLE---------------SLIDE----KSESNKHK 241 (511)
T ss_pred cChHHHhhHhhhhhhhhccccccchhhhccCccccccchhhhcccchh---------------hhhcc----cccchhhh
Confidence 788899999999999999988888899999999998777766654321 11111 23335577
Q ss_pred cEEEE---ecCCCChHHHHHHHHHHHhHcCCCCCCCCHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEeeCCeEE
Q 006510 336 LQIRL---KRSSFDPQEFELYRRYQIKVHNDKPDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLV 412 (642)
Q Consensus 336 l~v~i---~~~~~~~E~~~LY~rYq~~~H~d~~~~~s~~~f~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~YrlDgkLI 412 (642)
+++++ ..++|++|+|+||+|||+.||+|+|..+++.+|+||||+|||..+.|.| +|.|||||||||||+|||||
T Consensus 242 l~~r~~hl~~s~F~~EsfeLYKkYQm~VH~D~p~~~~e~sfkRFLcdSPL~~e~~~g---~p~~gyGSfHqqY~lDgkLI 318 (511)
T KOG1193|consen 242 LEVRLIHLKRSEFSPESFELYKKYQMKVHNDKPESITEKSFKRFLCDSPLGNEQPGG---GPLCGYGSFHQQYRLDGKLI 318 (511)
T ss_pred hheeeccccccccChHHHHHHHHHHHhhhcCCCCCcchhhHHHHhhcCCCccCCCCC---CCcccccchhheeeeCCeEE
Confidence 77665 4689999999999999999999999999999999999999999888776 79999999999999999999
Q ss_pred EEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCcccccccCCCCccccCC
Q 006510 413 AVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPL 492 (642)
Q Consensus 413 AVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~CpKM~YK~~f~P~elL~p~ 492 (642)
|||||||||.|||||||||||||+|||||+|+|||||+|++++++++|+|+|||||||||+||||||||+|+|++||||+
T Consensus 319 AVgViDILP~cvSSvYlfyDPDYSflSLG~ySALREI~~vq~~~a~~s~L~YYYmGyYIHSCpKMrYKa~yrPSeLLcp~ 398 (511)
T KOG1193|consen 319 AVGVIDILPKCVSSVYLFYDPDYSFLSLGKYSALREIALVQRLHAKCSNLQYYYMGYYIHSCPKMRYKAKYRPSELLCPE 398 (511)
T ss_pred EEEEeecCCCccceEEEEECCchhhhccchhHHHHHHHHHHHHHhhCCCceEEEeeeEEecCcccccccccChHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeCCccccccCCCCceeeccccc-ccCCCCccccccccccccCCCCCCCCCCcccCCCCCcccCCCCCCCCCCCCC
Q 006510 493 RYQWVPYDIARPLLDRKPYVVLSDFAS-LQNESSPCISENVMGCQHDDIGQGDSNDVRMDYDYDDEMLDPESESDDDEPD 571 (642)
Q Consensus 493 t~~W~~l~~~~~~LD~~kY~rls~~~~-~~n~~~~~~~~~~~~~~~~~~~~~d~n~~~~~~~~d~~~~d~~~~~~~~~~~ 571 (642)
|+.|+||+.|+++||+++|++|+++.- ..++.+++++|.+++-. +++. ..|
T Consensus 399 ty~WvP~e~~r~lLd~~~y~~~s~~~~~s~~~~s~~~sE~l~e~~----------------------~~e~-----~~~- 450 (511)
T KOG1193|consen 399 TYKWVPFEVIRPLLDKKKYTRFSEEPYLSDSQTSEGASETLKEKV----------------------IDEH-----EDM- 450 (511)
T ss_pred cceeeehhhhhhhhccCcceecccccccCccccccCCccccchhh----------------------HHHH-----Hhh-
Confidence 999999999999999999999999752 22222233333322200 0000 000
Q ss_pred ccccccccCCCCCCCCeeEEEeCCeeeechhhhhhhccchhhhHHHHHHHHHHHHhHHHHHHHHhhcc
Q 006510 572 TETSCQTVGVEDGDISNIVIRGQGTRVRYKDIQRVFGPIQRRSLESQLRKYMKVVGAELSERMVYALG 639 (642)
Q Consensus 572 ~~~~~~~~~~~~~dl~~vlvl~~~s~~~y~~~~~~~~~~~~~~~e~~v~ey~~lVG~~~a~rml~~~~ 639 (642)
......+|.+|+|..+++...|+++.++.++++++++|.+|.+|++|||++||+||||+++
T Consensus 451 -------~~G~~~~i~~~li~~~~~~~~~k~~~~i~~~s~~~q~e~~i~~y~klVG~E~s~rm~y~~~ 511 (511)
T KOG1193|consen 451 -------LGGCTNKIPNILISLNGQSGRYKDLPQINFPSEPPQVEAMIVDYAKLVGAELSERMVYVLS 511 (511)
T ss_pred -------cCceeccchhhhhhhcccccccccchhccCcccchhHHHHHHHHHHHHhHHhhhheeEecC
Confidence 1123455899999999999999999999999999999999999999999999999999864
No 2
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=100.00 E-value=4.5e-70 Score=552.30 Aligned_cols=228 Identities=33% Similarity=0.560 Sum_probs=204.4
Q ss_pred eecCCCCCCCCCCCCCCCCceeeccccCCCCHHHHHHHHHhhhhccCCeeeccCCCCCCCCceeeeecCCCCCcChhHHH
Q 006510 26 GDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKEQRR 105 (642)
Q Consensus 26 ~~~g~~~~~CgYc~~~~~~~~s~g~~a~~lt~~~Yq~LidrGwRRSG~~~YKP~~~~tCcp~ytIRl~v~~FkpsKsQrr 105 (642)
..+-|.+++||||++.. ....+..+.+.++++.|+.|+++||||||+++|||+|. +||+|+||||+|.+|+|||+|||
T Consensus 10 ~~~~t~~~~C~YL~~r~-~~~~~~~~~~~~~~~~y~~L~~~GfRRsG~~~YrP~C~-~C~aC~siRi~v~~F~psrsqrR 87 (240)
T PRK01305 10 QFYLTAPHPCSYLPGRQ-ERKLVADPSHPIAAELYDELLQAGFRRSGNIAYRPHCD-GCRACVSVRIPVAEFVPSRSQRR 87 (240)
T ss_pred eEEecCCCCCCCCCCcc-ceEEEecccccCCHHHHHHHHHcCcCcCCCeeecCCCC-CCcCceeEEeeHHHcCcCHHHHH
Confidence 34458999999999542 22334458889999999999999999999999999998 79999999999999999999999
Q ss_pred HHHhhcccccccccccCcccccchhhhhcCCCCCCCCCccCccccccccccCCccCchhHHHHHhhhhhhHHHHHHHhhh
Q 006510 106 VSRRMQSVVYIPRFLDGTVDVEKKSVELIKDPSTSNCNKVSSSVENNSLSHNNEENNKEEEILQFLSGQIDNAVQLCIVR 185 (642)
Q Consensus 106 vlkr~~~~~~~~kfL~g~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 185 (642)
+||||+ +
T Consensus 88 ~lkrn~------d------------------------------------------------------------------- 94 (240)
T PRK01305 88 VLKRNA------D------------------------------------------------------------------- 94 (240)
T ss_pred HHhhcc------C-------------------------------------------------------------------
Confidence 999887 1
Q ss_pred cccccCCcCccchhhhhhHHHHHhhhhccccccccchhHHHHHHHHHHHHHhhHHHHHHHhhcccccCCCCChHHHHHHH
Q 006510 186 GQFLSGIQLPKASVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTGPSPKIIAAKL 265 (642)
Q Consensus 186 ~~~~~~~~~p~~~~k~v~~~~~k~~~~g~~~~~~~sn~~f~i~~~~~~a~~~~k~~~q~r~~~~~~~~~~~~~~~~~~kl 265 (642)
T Consensus 95 -------------------------------------------------------------------------------- 94 (240)
T PRK01305 95 -------------------------------------------------------------------------------- 94 (240)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhcccccccccCCccchhhhhhhcccccccccccccccccccccccCccCCCCCCCccccCCCcEEEEecCCC
Q 006510 266 ASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDEDVHIGTVSKESAKTCESKGGCLKNSSEHPQAKRHKLQIRLKRSSF 345 (642)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~g~~n~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~i~~~~~ 345 (642)
|+|++.++.+
T Consensus 95 ----------------------------------------------------------------------l~v~~~~~~~ 104 (240)
T PRK01305 95 ----------------------------------------------------------------------LVVRVLPPEF 104 (240)
T ss_pred ----------------------------------------------------------------------eEEEEcCCCC
Confidence 1112334456
Q ss_pred ChHHHHHHHHHHHhHcCCCCC-CCCHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEeeCCeEEEEEEEecCCCcc
Q 006510 346 DPQEFELYRRYQIKVHNDKPD-QVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCL 424 (642)
Q Consensus 346 ~~E~~~LY~rYq~~~H~d~~~-~~s~~~f~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~YrlDgkLIAVgViDiLp~~l 424 (642)
++|+|+||+|||++||+|+++ +.+.++|.+||+++|+. ++|++||+||+||||||+|+||+||
T Consensus 105 ~~E~~~Ly~rY~~~rH~dg~m~~~~~~~y~~Fl~~~~~~----------------t~~~ey~~~g~LiaVav~D~l~d~l 168 (240)
T PRK01305 105 TEEHYALYRRYLRARHADGGMDPPSRDQYAQFLEDSWVN----------------TRFIEFRGDGKLVAVAVTDVLDDGL 168 (240)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCC----------------cEEEEEEeCCeEEEEEEEeccCCce
Confidence 799999999999999999854 78999999999999874 7999999999999999999999999
Q ss_pred cceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCcccccccCCCCccccCCCCceeeCCc
Q 006510 425 SSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWVPYDI 501 (642)
Q Consensus 425 SSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~CpKM~YK~~f~P~elL~p~t~~W~~l~~ 501 (642)
|||||||||||+++|||||+||+||++||+++ ++|+||||||++||||+||++|+|+|+|+++ .|.+++.
T Consensus 169 SAVY~FyDPd~~~~SLG~~~iL~qI~~ak~~g-----l~y~YLGY~I~~c~kM~YK~~f~P~E~l~~~--~W~~~~~ 238 (240)
T PRK01305 169 SAVYTFYDPDEEHRSLGTFAILWQIELAKRLG-----LPYVYLGYWIKGSRKMNYKARFRPLEILIDG--GWQRLEE 238 (240)
T ss_pred eeEEEeeCCCccccCCHHHHHHHHHHHHHHcC-----CCeEeeeEEECCCCcccccccCCcceeecCC--cceeCCC
Confidence 99999999999999999999999999999995 9999999999999999999999999999998 8999865
No 3
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-63 Score=493.08 Aligned_cols=232 Identities=34% Similarity=0.596 Sum_probs=203.6
Q ss_pred EEeecCCCCCCCCCCCCC-CCCceeeccccCCCCHHHHHHHHHhhhhccCCeeeccCCCCCCCCceeeeecCCCCCcChh
Q 006510 24 VVGDCGTCRSSCGYCKSS-GRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKE 102 (642)
Q Consensus 24 iV~~~g~~~~~CgYc~~~-~~~~~s~g~~a~~lt~~~Yq~LidrGwRRSG~~~YKP~~~~tCcp~ytIRl~v~~FkpsKs 102 (642)
....|=|.+++|+|+++. ++..+.+ ....++++.|..|+..||||||+++|||.|. +||+|+++|+.|.+|.||||
T Consensus 9 ~~q~f~T~~~~C~Yl~~~~er~~~~~--~~~~~~~ei~~~l~~~GFRRSg~~~YRP~C~-~C~aC~s~Ri~~~ef~~srs 85 (253)
T COG2935 9 LLQFFLTAPHPCPYLPDRMERKLFTH--PVDPRNPEIYDELTQAGFRRSGNIAYRPHCE-HCRACISVRILVNEFVPSRS 85 (253)
T ss_pred cceeeecCCCCCCCCCCceeeeeeec--cccccCHHHHHHHHHhhhhhhcceecCCccc-chhhhheeecchhccCccHH
Confidence 344445899999999943 3333443 7888999999999999999999999999988 69999999999999999999
Q ss_pred HHHHHHhhcccccccccccCcccccchhhhhcCCCCCCCCCccCccccccccccCCccCchhHHHHHhhhhhhHHHHHHH
Q 006510 103 QRRVSRRMQSVVYIPRFLDGTVDVEKKSVELIKDPSTSNCNKVSSSVENNSLSHNNEENNKEEEILQFLSGQIDNAVQLC 182 (642)
Q Consensus 103 Qrrvlkr~~~~~~~~kfL~g~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~l~~~i~~~~~~~ 182 (642)
|||||+++. .
T Consensus 86 ~rR~l~rn~------~---------------------------------------------------------------- 95 (253)
T COG2935 86 QRRVLARNA------D---------------------------------------------------------------- 95 (253)
T ss_pred HHHHHHhcc------c----------------------------------------------------------------
Confidence 999999888 1
Q ss_pred hhhcccccCCcCccchhhhhhHHHHHhhhhccccccccchhHHHHHHHHHHHHHhhHHHHHHHhhcccccCCCCChHHHH
Q 006510 183 IVRGQFLSGIQLPKASVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTGPSPKIIA 262 (642)
Q Consensus 183 ~~~~~~~~~~~~p~~~~k~v~~~~~k~~~~g~~~~~~~sn~~f~i~~~~~~a~~~~k~~~q~r~~~~~~~~~~~~~~~~~ 262 (642)
T Consensus 96 -------------------------------------------------------------------------------- 95 (253)
T COG2935 96 -------------------------------------------------------------------------------- 95 (253)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhhcccccccccCCccchhhhhhhcccccccccccccccccccccccCccCCCCCCCccccCCCcEEEEec
Q 006510 263 AKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDEDVHIGTVSKESAKTCESKGGCLKNSSEHPQAKRHKLQIRLKR 342 (642)
Q Consensus 263 ~kl~~~~~~~~~~~~~~~~~~~g~~n~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~i~~ 342 (642)
|.+.+++
T Consensus 96 -------------------------------------------------------------------------l~~~~~~ 102 (253)
T COG2935 96 -------------------------------------------------------------------------LVVRVEP 102 (253)
T ss_pred -------------------------------------------------------------------------eEEEEcc
Confidence 0012234
Q ss_pred CCCChHHHHHHHHHHHhHcCCCC-CCCCHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEe----eCCeEEEEEEE
Q 006510 343 SSFDPQEFELYRRYQIKVHNDKP-DQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYL----IDDRLVAVGVI 417 (642)
Q Consensus 343 ~~~~~E~~~LY~rYq~~~H~d~~-~~~s~~~f~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~Yr----lDgkLIAVgVi 417 (642)
+++++|+|+||+|||..||.++. .+++..+|..||.++++. .|.+|+.++ ..|+||||+|+
T Consensus 103 a~~s~E~y~LyrrY~~~rH~~g~m~~~s~~~f~~f~~d~~~~--------------~~~~e~r~~~~~~~~G~LvAVavt 168 (253)
T COG2935 103 AEYSEEQYELYRRYLDQRHADGGMSDMSFKDFAAFLEDTHVN--------------TQLIEYRRRKPGKGEGKLVAVAVT 168 (253)
T ss_pred CCCCHHHHHHHHHHHHHHcccCCCCCccHHHHHHHHhccccc--------------eeeEEEEecCCCCCCCcEEEEEee
Confidence 55679999999999999999874 599999999999999753 456777776 79999999999
Q ss_pred ecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCcccccccCCCCccccCCCCcee
Q 006510 418 DILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWV 497 (642)
Q Consensus 418 DiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~CpKM~YK~~f~P~elL~p~t~~W~ 497 (642)
|+||+||||||+|||||++.+|||||+||+||++|++++ |+||||||||++||||+||++|.|+|+|.|. +|.
T Consensus 169 DvL~dGlSsVY~FydPd~s~~SLGt~~iL~~I~~aq~~~-----l~yvYLGYwI~~c~KM~YKa~f~P~e~L~~~--~W~ 241 (253)
T COG2935 169 DVLPDGLSSVYTFYDPDMSKRSLGTLSILDQIAIAQRLG-----LPYVYLGYWIKGCPKMNYKARFSPLELLVPG--GWR 241 (253)
T ss_pred ecccCcceeEEEEeCCChhhhcchHHHHHHHHHHHHHhC-----CCeEEEEEEECCccccCcccccChHHhhcCC--ceE
Confidence 999999999999999999999999999999999999995 9999999999999999999999999999997 699
Q ss_pred eCCcc
Q 006510 498 PYDIA 502 (642)
Q Consensus 498 ~l~~~ 502 (642)
+++..
T Consensus 242 ~~~~~ 246 (253)
T COG2935 242 RFEGE 246 (253)
T ss_pred ecccc
Confidence 98754
No 4
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=100.00 E-value=1.2e-49 Score=369.32 Aligned_cols=127 Identities=52% Similarity=0.976 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHhHcCCCCC-CCCHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEeeCCeEEEEEEEecCCCccc
Q 006510 347 PQEFELYRRYQIKVHNDKPD-QVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLS 425 (642)
Q Consensus 347 ~E~~~LY~rYq~~~H~d~~~-~~s~~~f~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~YrlDgkLIAVgViDiLp~~lS 425 (642)
+|+|+||+|||+.||+++++ ..++++|.+||+++|+ |++|++||+|||||||||||+||+|||
T Consensus 1 eE~~~Ly~rY~~~rH~~~~~~~~~~~~y~~fl~~~~~----------------~t~~~~~~~~~kLiav~v~D~l~~glS 64 (128)
T PF04377_consen 1 EEHYELYERYQMARHPDGDMDPPSQEQYRRFLCSSPL----------------GTYHLEYRLDGKLIAVAVVDILPDGLS 64 (128)
T ss_pred ChhHHHHHHHHHHhCCCCCCCCcCHHHHHHHHhCCCC----------------CCEEEEEEeCCeEEEEEEeecccchhh
Confidence 58999999999999999877 4459999999999975 489999999999999999999999999
Q ss_pred ceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCcccccccCCCCccccCCCCce
Q 006510 426 SKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQW 496 (642)
Q Consensus 426 SVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~CpKM~YK~~f~P~elL~p~t~~W 496 (642)
|||||||||++++|||||+||+||++||+++ ++||||||||++||||+||++|+|+|+|||+ +|
T Consensus 65 aVY~fyDPd~~~~SlG~~~iL~eI~~a~~~~-----l~y~YLGY~I~~c~kM~YK~~f~P~e~l~~~--~W 128 (128)
T PF04377_consen 65 AVYTFYDPDYSKRSLGTYSILREIELARELG-----LPYYYLGYWIHGCPKMNYKARFRPHELLDPG--RW 128 (128)
T ss_pred heeeeeCCCccccCcHHHHHHHHHHHHHHcC-----CCEEeeCeEeCCCCcccchhcCCceeeccCC--CC
Confidence 9999999999999999999999999999985 9999999999999999999999999999998 56
No 5
>PF04376 ATE_N: Arginine-tRNA-protein transferase, N terminus; InterPro: IPR007471 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the N-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=99.94 E-value=6.3e-28 Score=207.53 Aligned_cols=76 Identities=53% Similarity=0.979 Sum_probs=71.0
Q ss_pred CCCCCCCCCCC-CCCCCceeeccccCCCCHHHHHHHHHhhhhccCCeeeccCCCCCCCCceeeeecCCCCCcChhHHH
Q 006510 29 GTCRSSCGYCK-SSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKEQRR 105 (642)
Q Consensus 29 g~~~~~CgYc~-~~~~~~~s~g~~a~~lt~~~Yq~LidrGwRRSG~~~YKP~~~~tCcp~ytIRl~v~~FkpsKsQrr 105 (642)
.+.+++||||+ ...+..+.+|++++.|++++|+.||++||||||+++|||+| .+||+||||||+|.+|+|||+|||
T Consensus 4 ~~~~~~C~Y~~~~~~~~~~~~~~~~~~~~~~~y~~Ll~~G~RRsG~~~YrP~c-~~C~~c~~iRi~v~~F~~sksqrR 80 (80)
T PF04376_consen 4 LTQPSSCGYCPGRSARSSYTYGAPSESLSPEDYQQLLDRGFRRSGNYFYRPNC-QSCCACYPIRIDVSEFKPSKSQRR 80 (80)
T ss_pred CCCCCcCCCCCCCccCEEEEeccccccCCHHHHHHHHHhCCcccCCEEecCCC-CCCcCeEEEEEEHHhcCcChHhCC
Confidence 37899999998 44567888999999999999999999999999999999999 689999999999999999999996
No 6
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=96.75 E-value=0.021 Score=51.41 Aligned_cols=69 Identities=25% Similarity=0.253 Sum_probs=59.3
Q ss_pred EEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCccccc
Q 006510 402 HQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYK 480 (642)
Q Consensus 402 h~~YrlDgkLIAVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~CpKM~YK 480 (642)
-...++||++||+.++=.-.+.+-.-+.-|||+|..+++|++....-|.+|.+.+ +++|=+|- ..+.||
T Consensus 73 l~~~~~~g~~va~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g-----~~~~d~g~-----g~~~yK 141 (142)
T PF13480_consen 73 LFVLYDGGEPVAFALGFRHGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERG-----LRYFDFGG-----GNEPYK 141 (142)
T ss_pred EEEEEECCEEEEEEEEEEECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCC-----CCEEEECC-----CChHhC
Confidence 3445679999999999999999999999999999999999999999999999995 88888874 345555
No 7
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=88.83 E-value=3.3 Score=46.15 Aligned_cols=77 Identities=22% Similarity=0.181 Sum_probs=66.0
Q ss_pred eEEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCccccc
Q 006510 401 FHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYK 480 (642)
Q Consensus 401 ~h~~YrlDgkLIAVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~CpKM~YK 480 (642)
...-.+++|+||||...=.--+-+-+-..-||||+..+|+|-+..++-|+++-..+ +.+|=+| |=.=.||
T Consensus 273 rl~gL~~G~~lvAV~~~lr~~~t~h~~l~a~dpe~~~~SPG~~lf~d~i~~~~~~g-----~~~~Dfg-----vG~q~YK 342 (406)
T COG5653 273 RLFGLHAGGRLVAVHGLLRQGGTYHAWLGAIDPEFARASPGMLLFLDLIEWACGQG-----LARFDFG-----VGDQSYK 342 (406)
T ss_pred EEEEEeeCCEEEEEEeeeccCCEEEEEeeccCHHHhhcCchHHHHHHHHHHHhcCC-----CeEEeec-----CCChHHH
Confidence 34456789999999999888888999999999999999999999999999999996 6655554 7778899
Q ss_pred ccCCCCc
Q 006510 481 AAYHPSE 487 (642)
Q Consensus 481 ~~f~P~e 487 (642)
..|.+++
T Consensus 343 R~~~~~~ 349 (406)
T COG5653 343 RHWGDQS 349 (406)
T ss_pred HhhhhHH
Confidence 9998743
No 8
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=86.86 E-value=2.3 Score=34.72 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=49.8
Q ss_pred EeeCCeEEEEEEEecCCCc-----ccceeee-eCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeec
Q 006510 405 YLIDDRLVAVGVIDILPRC-----LSSKYLF-WDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIH 472 (642)
Q Consensus 405 YrlDgkLIAVgViDiLp~~-----lSSVY~f-YDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~ 472 (642)
|+.||+|||++.+-+.+.. .--+..+ =+|+|....+|+..+-.-+++|++.+ ....++.....
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g-----~~~i~~~~~~~ 69 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRG-----IKRIYLDVSPD 69 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTT-----ESEEEEEEETT
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcC-----ccEEEEEEeCC
Confidence 5789999999999988875 3333333 38999999999999999999999974 78888765444
No 9
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=81.95 E-value=18 Score=31.59 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=48.3
Q ss_pred EEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEee
Q 006510 403 QQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYI 471 (642)
Q Consensus 403 ~~YrlDgkLIAVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI 471 (642)
+-.+.+|+|||.+.++.-....--..++-+|+|....+|+-.+-.-++++++.+ ++..++.-..
T Consensus 34 ~~~~~~~~~vg~~~~~~~~~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~-----~~~i~~~~~~ 97 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVLDEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRG-----VNEIFLEVRV 97 (131)
T ss_pred EEEecCCeEEEEEEEEecCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcC-----CCeEEEEEec
Confidence 344568999999998875554433445669999999999999888888888874 6777776443
No 10
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=79.46 E-value=9.5 Score=27.97 Aligned_cols=56 Identities=14% Similarity=-0.012 Sum_probs=43.3
Q ss_pred eCCeEEEEEEEecCCC--ccccee-eeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEe
Q 006510 407 IDDRLVAVGVIDILPR--CLSSKY-LFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYL 467 (642)
Q Consensus 407 lDgkLIAVgViDiLp~--~lSSVY-~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYL 467 (642)
.+|++||+..+...+. ....+. ++-+|+|....+|+-.+-.-++++++.+ ..++++
T Consensus 6 ~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~v~~ 64 (65)
T cd04301 6 DDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERG-----AKRLRL 64 (65)
T ss_pred cCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcC-----CcEEEe
Confidence 5789999998877662 333344 7789999999999999999999999863 666654
No 11
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=75.84 E-value=14 Score=39.34 Aligned_cols=80 Identities=9% Similarity=-0.021 Sum_probs=58.9
Q ss_pred EEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCccccccc
Q 006510 403 QQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAA 482 (642)
Q Consensus 403 ~~YrlDgkLIAVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~CpKM~YK~~ 482 (642)
..+..||++||.+++=.-.+.+..-|.-.++++..++.+.+..-.-|++|++.| +++|-+|=--.+--=.+||.+
T Consensus 199 ~a~~~~g~~va~~l~~~~~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G-----~~~fDfG~s~~~~G~~~FK~~ 273 (330)
T TIGR03019 199 TVRLGDGVVASAVLSFYFRDEVLPYYAGGLREARDVAANDLMYWELMRRACERG-----LRVFDFGRSKRGTGPFKFKKN 273 (330)
T ss_pred EEEeCCCCEEEEEEEEEeCCEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCC-----CcEEEcCCCCCCCccHHHHhc
Confidence 334369999998886555566655566678999999999999999999999995 999999942111123579997
Q ss_pred CCCCc
Q 006510 483 YHPSE 487 (642)
Q Consensus 483 f~P~e 487 (642)
|....
T Consensus 274 ~G~~~ 278 (330)
T TIGR03019 274 WGFEP 278 (330)
T ss_pred CCCee
Confidence 77553
No 12
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=69.24 E-value=74 Score=32.98 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=42.6
Q ss_pred EeeCCeEEEEEEEecCCCcccc-ee-eeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEee
Q 006510 405 YLIDDRLVAVGVIDILPRCLSS-KY-LFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLG 468 (642)
Q Consensus 405 YrlDgkLIAVgViDiLp~~lSS-VY-~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLG 468 (642)
...||++||++.+.+-+..-.+ |. ++=+|+|....+|+..+-.-++++++.+ +...|+-
T Consensus 163 ~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g-----~~~l~~~ 223 (266)
T TIGR03827 163 VEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKG-----IRTAYTI 223 (266)
T ss_pred EEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC-----CcEEEee
Confidence 3469999999887554432222 33 3449999999999998888888999875 6666553
No 13
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=66.38 E-value=77 Score=29.03 Aligned_cols=58 Identities=16% Similarity=0.078 Sum_probs=42.7
Q ss_pred CCeEEEEEEEecCC----Cccccee---eeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEe
Q 006510 408 DDRLVAVGVIDILP----RCLSSKY---LFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYY 470 (642)
Q Consensus 408 DgkLIAVgViDiLp----~~lSSVY---~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYy 470 (642)
+|++||++.+-+.+ .+....| ++-+|+|....+|+..+-.=+++|++++ +.-.++.-.
T Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g-----~~~i~l~~~ 127 (150)
T PLN02706 63 SGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAG-----CYKVILDCS 127 (150)
T ss_pred CCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcC-----CCEEEEEec
Confidence 68999998774322 2211122 5679999999999999999999999874 777777754
No 14
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=66.34 E-value=29 Score=31.83 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=47.2
Q ss_pred eCCeEEEEEEEecCCCccccee--eeeCCCcCcCCchhHHHHHHHHHH-HHhcccCCCCceeEeeEeecC
Q 006510 407 IDDRLVAVGVIDILPRCLSSKY--LFWDPDYAFLSLGKYSALQEISWV-KENQTHCPTLQYYYLGYYIHS 473 (642)
Q Consensus 407 lDgkLIAVgViDiLp~~lSSVY--~fYDPdy~~lSLGt~saL~EI~~a-r~l~~~~P~l~YyYLGYyI~~ 473 (642)
.+|++||++.+..+...-..++ ++..|+|....+|+-.+..-+++| ++++ ++..++.-+-.+
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~~~v~~~~~~~gig~~l~~~l~~~af~~~~-----~~~i~~~v~~~N 122 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELSIYVSPDYRGKGIGRKLLDELIEYAFKELG-----IHKIYLEVFSSN 122 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEEEEEEGGGTTSSHHHHHHHHHHHHH-HHTT------CEEEEEEETT-
T ss_pred cCCcEEEEEEEEeeeccCCEEEEeeEEChhHCCCcHHHHHHHHHHHHhhhccC-----eEEEEEEEecCC
Confidence 6999999998886554433333 356699999999999999999999 7774 899998775553
No 15
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=65.96 E-value=6 Score=34.11 Aligned_cols=50 Identities=34% Similarity=0.521 Sum_probs=31.7
Q ss_pred ccccchhHHHHHHHHHHHHHhhHHHHHHHhhcccccCCCCChHHHHHHHHHHHHhhhhcccccccccCCccchh
Q 006510 217 LLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTGPSPKIIAAKLASSLIQLAETSGLSIRACNGHLNFY 290 (642)
Q Consensus 217 ~~~~sn~~f~i~~~~~~a~~~~k~~~q~r~~~~~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~~~~g~~n~~ 290 (642)
.+|.+|.+|.+++.++ .+|..++++|.+.+........+.+ +..|++||+
T Consensus 35 GD~~~n~a~~lak~~k-----------------------~~P~~iA~~i~~~l~~~~~i~~vev-~gpGFiN~~ 84 (85)
T PF03485_consen 35 GDYQTNIAFRLAKKLK-----------------------KNPREIAEEIAEKLEKSPIIEKVEV-AGPGFINFF 84 (85)
T ss_dssp -SEEEEHHHHHHHHTT-----------------------S-HHHHHHHHHHCHCTTTTEEEEEE-ETTTEEEEE
T ss_pred eeeeccchHHHHHHcC-----------------------CCHHHHHHHHHHhcCCCCCEEEEEE-cCCcEEEEe
Confidence 4788999988765443 2577888888887755443333332 245899976
No 16
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=60.67 E-value=1.2e+02 Score=27.75 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=40.7
Q ss_pred eeCCeEEEEEEEecCCC----cccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEe
Q 006510 406 LIDDRLVAVGVIDILPR----CLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYY 470 (642)
Q Consensus 406 rlDgkLIAVgViDiLp~----~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYy 470 (642)
..+|++||++-+...+. .+--+-++=+|+|....+|+-.+=.-+++|++.. ++.-..+..+
T Consensus 57 ~~~~~~vG~~~~~~~~~~~~~~~~~~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~----~~~~i~l~v~ 121 (162)
T PRK10140 57 CIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMREMIEMCDNWL----RVDRIELTVF 121 (162)
T ss_pred EECCEEEEEEEEecccccccceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhhC----CccEEEEEEE
Confidence 46899999987765432 1111224559999999999987777778887732 3565555443
No 17
>PRK07922 N-acetylglutamate synthase; Validated
Probab=59.61 E-value=24 Score=34.11 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=44.7
Q ss_pred eCCeEEEEEEEecCCCcccce-eeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEee
Q 006510 407 IDDRLVAVGVIDILPRCLSSK-YLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLG 468 (642)
Q Consensus 407 lDgkLIAVgViDiLp~~lSSV-Y~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLG 468 (642)
.+|++||++.+.+.++..-.+ .++=+|+|....+|+..+=.-+++|++.+ ++.+|++
T Consensus 53 ~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g-----~~~l~~~ 110 (169)
T PRK07922 53 LDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELG-----LSRVFVL 110 (169)
T ss_pred cCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcC-----CCEEEEE
Confidence 689999999888766544334 34559999999999998888888999885 7777654
No 18
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=59.45 E-value=37 Score=33.08 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=47.4
Q ss_pred eeCCeEEEEEEEecCCCcccceeee-eCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecC
Q 006510 406 LIDDRLVAVGVIDILPRCLSSKYLF-WDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHS 473 (642)
Q Consensus 406 rlDgkLIAVgViDiLp~~lSSVY~f-YDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~ 473 (642)
..+|++||+..+....+...-+.++ -+|+|....+|+-.+-.-+++|++.+ +...+++-+-++
T Consensus 108 ~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g-----~~~i~l~v~~~N 171 (194)
T PRK10975 108 DASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARG-----LTRLRVATQMGN 171 (194)
T ss_pred cCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcC-----CCEEEEEeCCCc
Confidence 3578999998887655443334544 49999999999999999999998874 777777765443
No 19
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=58.05 E-value=34 Score=33.34 Aligned_cols=63 Identities=10% Similarity=-0.031 Sum_probs=48.5
Q ss_pred eeCCeEEEEEEEecCCCccccee-eeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecC
Q 006510 406 LIDDRLVAVGVIDILPRCLSSKY-LFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHS 473 (642)
Q Consensus 406 rlDgkLIAVgViDiLp~~lSSVY-~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~ 473 (642)
..+|++||...+...+..---|. ++.+|+|....+|+-.+-.-+++|++++ +...++.-+..+
T Consensus 105 ~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g-----~~~I~l~v~~~N 168 (191)
T TIGR02382 105 DASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARG-----LTRLRVATQMGN 168 (191)
T ss_pred ccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcC-----CCEEEEEeCCCC
Confidence 45899999988876654322344 4459999999999999999999999885 788888766554
No 20
>PRK07757 acetyltransferase; Provisional
Probab=57.51 E-value=33 Score=31.58 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=43.0
Q ss_pred EeeCCeEEEEEEEecCCCcccce-eeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEe
Q 006510 405 YLIDDRLVAVGVIDILPRCLSSK-YLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYL 467 (642)
Q Consensus 405 YrlDgkLIAVgViDiLp~~lSSV-Y~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYL 467 (642)
...||++||.+.+.+......-| .++-+|+|....+|+..+-.-+++|++.+ +...+.
T Consensus 46 ~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g-----~~~i~~ 104 (152)
T PRK07757 46 AEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELG-----VKRVFA 104 (152)
T ss_pred EEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCC-----CCeEEE
Confidence 34789999998887665544334 34569999999999988877788888774 555543
No 21
>PRK03624 putative acetyltransferase; Provisional
Probab=57.50 E-value=46 Score=29.29 Aligned_cols=78 Identities=10% Similarity=-0.026 Sum_probs=47.5
Q ss_pred EeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecC--CCccccccc
Q 006510 405 YLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHS--CRKMRYKAA 482 (642)
Q Consensus 405 YrlDgkLIAVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~--CpKM~YK~~ 482 (642)
-+.||++||...+..-.+.....+++=+|+|....+|+-..-.-+.++++++ ++..++.-.-.+ +.++--|.-
T Consensus 50 ~~~~~~~vG~~~~~~~~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~-----~~~~~~~~~~~N~~~~~~y~k~G 124 (140)
T PRK03624 50 AEVGGEVVGTVMGGYDGHRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARG-----CPKINLQVREDNDAVLGFYEALG 124 (140)
T ss_pred EEcCCcEEEEEEeeccCCCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCC-----CCEEEEEEecCcHHHHHHHHHcC
Confidence 3468999999876543332222233459999999999965555566777764 677776643221 223444555
Q ss_pred CCCCc
Q 006510 483 YHPSE 487 (642)
Q Consensus 483 f~P~e 487 (642)
|.+..
T Consensus 125 F~~~~ 129 (140)
T PRK03624 125 YEEQD 129 (140)
T ss_pred Ccccc
Confidence 55443
No 22
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=53.97 E-value=50 Score=29.75 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=38.6
Q ss_pred EeeCCeEEEEEEEecCCC--------cccceeeeeCCCcCcCCchhHHHHHHHHHHHHhc
Q 006510 405 YLIDDRLVAVGVIDILPR--------CLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQ 456 (642)
Q Consensus 405 YrlDgkLIAVgViDiLp~--------~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~ 456 (642)
...||++||...+...++ -|.. ++=+|+|....+|+..+-.=+++|++.+
T Consensus 52 ~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~--l~v~p~~rg~GiG~~Ll~~~~~~a~~~~ 109 (144)
T PRK10146 52 ALLDGEVVGMIGLHLQFHLHHVNWIGEIQE--LVVMPQARGLNVGSKLLAWAEEEARQAG 109 (144)
T ss_pred EEECCEEEEEEEEEecccccccchhheehe--eEECHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 456899999887765432 1333 4459999999999999999999999885
No 23
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=52.76 E-value=59 Score=26.73 Aligned_cols=48 Identities=17% Similarity=-0.029 Sum_probs=38.6
Q ss_pred ceEEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHH
Q 006510 400 SFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQ 447 (642)
Q Consensus 400 s~h~~YrlDgkLIAVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~ 447 (642)
.++.-.+.||++||++.+.-..+..-=.+++=+|+|....+|+..+-.
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~ll~~ 50 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNEDFAYIGYLAVDPEYRGKGIGSKLLNY 50 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTEEEEEEEEE-GGGTTSSHHHHHHHH
T ss_pred cEEEEEEECCEEEEEEEEEEcCCEEEEEEEEECHHHcCCCHHHHHHHH
Confidence 467777889999999999888887766677889999999999765443
No 24
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.57 E-value=25 Score=41.56 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=43.0
Q ss_pred CCCcceEEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhc
Q 006510 396 CGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQ 456 (642)
Q Consensus 396 ~~~Gs~h~~YrlDgkLIAVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~ 456 (642)
...|.||.++|++|+.+.|-|-|.||.-.-..-+-.-... ==..+||-|=+||+-+|
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~~~~~~~s~~~----~efW~aLlEKAyaKl~G 170 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNGGLLFSHSSGK----NEFWAALLEKAYAKLLG 170 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcCCEEEEeecCC----ceeHHHHHHHHHHHHhC
Confidence 4678999999999999999999999965544432211111 01378999999999998
No 25
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=50.93 E-value=2.3e+02 Score=30.29 Aligned_cols=112 Identities=10% Similarity=-0.038 Sum_probs=72.3
Q ss_pred CcEEEEecCCCC--hHHHHHHHHHHHhHcCCCCCCCCHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEe---eCC
Q 006510 335 KLQIRLKRSSFD--PQEFELYRRYQIKVHNDKPDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYL---IDD 409 (642)
Q Consensus 335 ~l~v~i~~~~~~--~E~~~LY~rYq~~~H~d~~~~~s~~~f~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~Yr---lDg 409 (642)
+++++|.++... +.-++|..+-- ..+.....++.+++..++.+. . .|..... -|+
T Consensus 184 ~m~~~Ir~a~~~Dl~ri~~L~~~tn--qfn~~~~~~s~~~i~~~l~~~-~-----------------~~~~~~~d~~gd~ 243 (320)
T TIGR01686 184 ELSLNISKNDEQNVQRVEELLGRTN--QFNATYTRLNQEDVAQHMQKE-E-----------------IVTVSMSDRFGDS 243 (320)
T ss_pred CCEEEEEECChhhhHHHHHHHHhHH--hhhccCccCCHHHHHHHhcCC-C-----------------EEEEEEEecCCCC
Confidence 555666666532 33456665421 122222356788898887442 1 1222222 267
Q ss_pred eEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEee
Q 006510 410 RLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYI 471 (642)
Q Consensus 410 kLIAVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI 471 (642)
.+||++++...++.+-=.-++-+|++..+.+|+...-.-+++|++.+ ....++.|+.
T Consensus 244 givG~~~~~~~~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G-----~~~i~l~v~~ 300 (320)
T TIGR01686 244 GIIGIFVFEKKEGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLG-----NHNARLYYRR 300 (320)
T ss_pred ceEEEEEEEecCCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcC-----CCeEEEEEee
Confidence 89999998776655433345669999999999988878888899885 8888888765
No 26
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=48.55 E-value=1.8e+02 Score=25.05 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=32.9
Q ss_pred EEeeCCeEEEEEEEecCCCcccceeeee-CCCcCcCCchhHHHHHHHHHHHH
Q 006510 404 QYLIDDRLVAVGVIDILPRCLSSKYLFW-DPDYAFLSLGKYSALQEISWVKE 454 (642)
Q Consensus 404 ~YrlDgkLIAVgViDiLp~~lSSVY~fY-DPdy~~lSLGt~saL~EI~~ar~ 454 (642)
-...+|++||++.+. +++- |..+| +|+|....+|+--.-.-+++++.
T Consensus 48 v~~~~~~ivG~~~~~--~~~~--i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~ 95 (117)
T PF13673_consen 48 VAEEGGEIVGFAWLE--PDGE--ISHLYVLPEYRGRGIGRALLDAAEKEAKD 95 (117)
T ss_dssp EEEETTEEEEEEEEE--TCEE--EEEEEE-GGGTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEEc--CCCe--EEEEEEChhhcCCcHHHHHHHHHHHHHHc
Confidence 345799999999997 5543 44444 89998888888766666666644
No 27
>PF04256 DUF434: Protein of unknown function (DUF434); InterPro: IPR007368 This is a family of uncharacterised proteins.
Probab=48.04 E-value=9.3 Score=31.69 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=34.4
Q ss_pred CHHHHHHHHHhhhhccCCeeeccCCCCCCCCceeeeecCCCCCcChhHHHHHHhhc
Q 006510 56 TVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKEQRRVSRRMQ 111 (642)
Q Consensus 56 t~~~Yq~LidrGwRRSG~~~YKP~~~~tCcp~ytIRl~v~~FkpsKsQrrvlkr~~ 111 (642)
...|+-.||+|||++- .+|++-...|+.|+.||-+|.|..
T Consensus 6 A~~Dl~yLLnRGY~~k----------------~al~fVgnhy~Ls~rqR~~L~R~v 45 (58)
T PF04256_consen 6 AAEDLRYLLNRGYPKK----------------SALEFVGNHYRLSKRQRLALARCV 45 (58)
T ss_pred HHHHHHHHHhCCCCch----------------hHHHHHHHhccCCHHHHHHHHhhc
Confidence 3578999999999754 367888889999999999999987
No 28
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=47.24 E-value=90 Score=34.14 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=51.6
Q ss_pred CHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHH
Q 006510 369 TETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQE 448 (642)
Q Consensus 369 s~~~f~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~YrlDgkLIAVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~E 448 (642)
...+...||...-+....+. .+..-.+.||+|||+|-+. .+-|- +++=||+|....||+--+-.-
T Consensus 11 ~~~~v~~fL~~~~l~~d~~~-----------d~~vv~~~~~~lVg~g~l~--g~~ik--~vaV~~~~rG~Glg~~L~~~L 75 (332)
T TIGR00124 11 KACGIKNFLHQNELSLDAPL-----------EIFIAVYEDEEIIGCGGIA--GNVIK--CVAIDESLRGEGLALQLMTEL 75 (332)
T ss_pred HHHHHHHHHHhcCCcccCCC-----------CEEEEEEECCEEEEEEEEe--cCEEE--EEEEcHHHcCCCHHHHHHHHH
Confidence 35577888877655321111 2444456899999999873 33333 567799999999999888888
Q ss_pred HHHHHHhc
Q 006510 449 ISWVKENQ 456 (642)
Q Consensus 449 I~~ar~l~ 456 (642)
++++++.|
T Consensus 76 ~~~a~~~G 83 (332)
T TIGR00124 76 ENLAYELG 83 (332)
T ss_pred HHHHHHcC
Confidence 88999885
No 29
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=46.46 E-value=13 Score=39.61 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=48.4
Q ss_pred CCCcceEEEEeeCCeEEEEEEEecCCCcccceee-----eeCCCcCcCCchhHHH----HHHHHHHHHhcccCCCCceeE
Q 006510 396 CGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYL-----FWDPDYAFLSLGKYSA----LQEISWVKENQTHCPTLQYYY 466 (642)
Q Consensus 396 ~~~Gs~h~~YrlDgkLIAVgViDiLp~~lSSVY~-----fYDPdy~~lSLGt~sa----L~EI~~ar~l~~~~P~l~YyY 466 (642)
+-||+. .+++|+-||+-+|= --++-.-||+ =|||++..+|+|++-+ -.-.++|+++++ .|+ |=
T Consensus 172 ~~fG~v---L~l~~~P~Aiqlv~-k~es~~wv~~D~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k---~lr-fS 243 (264)
T PF07395_consen 172 MIFGSV---LFLNGQPCAIQLVY-KVESPKWVYFDYINGGYDPECRDFSPGSILMWLNIQDAWEYCRAQGK---PLR-FS 243 (264)
T ss_pred hheeeE---EEECCcceEEEEEE-EecCCCeEEEecccCccCcccccCCCccEEEEeeHHHHHHHHHHhCC---ceE-EE
Confidence 456663 36899999987762 2233344444 3699999999999754 445558888764 233 33
Q ss_pred eeEeecCCCcccccccC
Q 006510 467 LGYYIHSCRKMRYKAAY 483 (642)
Q Consensus 467 LGYyI~~CpKM~YK~~f 483 (642)
.| =|.-.||.++
T Consensus 244 fG-----r~~~~YK~rW 255 (264)
T PF07395_consen 244 FG-----RPDWDYKDRW 255 (264)
T ss_pred cC-----CCChHHHhhc
Confidence 45 4556788754
No 30
>PTZ00330 acetyltransferase; Provisional
Probab=44.21 E-value=2.4e+02 Score=25.36 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=35.5
Q ss_pred eeCCeEEEEEEEecCCCccc---ce----eeeeCCCcCcCCchhHHHHHHHHHHHHhc
Q 006510 406 LIDDRLVAVGVIDILPRCLS---SK----YLFWDPDYAFLSLGKYSALQEISWVKENQ 456 (642)
Q Consensus 406 rlDgkLIAVgViDiLp~~lS---SV----Y~fYDPdy~~lSLGt~saL~EI~~ar~l~ 456 (642)
..+|++||.+-+-.-+.... .+ .+|=+|+|....+|+..+=.-+++|+..+
T Consensus 58 ~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~ 115 (147)
T PTZ00330 58 SPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSG 115 (147)
T ss_pred eCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 35799999886543332110 01 14559999999999988888888988864
No 31
>PHA00673 acetyltransferase domain containing protein
Probab=41.53 E-value=1.2e+02 Score=29.88 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=42.9
Q ss_pred EEEeeCCeEEEEEEEecCCCc-ccc-e-----eeeeCCCcCcCCchhHHHHHHHHHHHHhc
Q 006510 403 QQYLIDDRLVAVGVIDILPRC-LSS-K-----YLFWDPDYAFLSLGKYSALQEISWVKENQ 456 (642)
Q Consensus 403 ~~YrlDgkLIAVgViDiLp~~-lSS-V-----Y~fYDPdy~~lSLGt~saL~EI~~ar~l~ 456 (642)
+-..+||++||...+++.|.. ... - .++=+|++....+|+-..-+=+++||+.|
T Consensus 58 lVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~G 118 (154)
T PHA00673 58 LGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLG 118 (154)
T ss_pred EEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCC
Confidence 344569999999999999954 221 1 23558999999999999989999999997
No 32
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=35.95 E-value=70 Score=34.45 Aligned_cols=55 Identities=20% Similarity=0.131 Sum_probs=42.0
Q ss_pred EeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEee
Q 006510 405 YLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLG 468 (642)
Q Consensus 405 YrlDgkLIAVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLG 468 (642)
|..||++||+|-+. ...+.+ ++=+|+|....+|+--+=.-+++|++.+ +...|+-
T Consensus 11 ~~~~~~iVG~~~l~--~~~I~~--vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g-----~~~i~L~ 65 (297)
T cd02169 11 FDDAGELIATGSIA--GNVLKC--VAVCPKYQGEGLALKIVSELINKAYEEG-----IFHLFLF 65 (297)
T ss_pred EEECCEEEEEEEec--cCEEEE--EEECHHHcCCCHHHHHHHHHHHHHHHCC-----CCEEEEE
Confidence 44679999998774 344443 4559999999999998888889999985 6666553
No 33
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=35.64 E-value=1.5e+02 Score=26.99 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=42.4
Q ss_pred EEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEee
Q 006510 404 QYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLG 468 (642)
Q Consensus 404 ~YrlDgkLIAVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLG 468 (642)
.+..||++||.+.+...++...-..++=+|+|....+|+..+=.-++.+++.+ +..+++.
T Consensus 44 ~~~~~~~~vG~~~~~~~~~~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~-----~~~~~~~ 103 (146)
T PRK09491 44 KLTVNGQMAAFAITQVVLDEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRG-----VATLWLE 103 (146)
T ss_pred EEEECCeEEEEEEEEeecCceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCC-----CcEEEEE
Confidence 34478999999999876554322223458999999999988777777777663 6666654
No 34
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=33.93 E-value=1.1e+02 Score=29.00 Aligned_cols=50 Identities=12% Similarity=-0.026 Sum_probs=37.4
Q ss_pred eCCeEEEEEEEecCCCcccc--eeeee-CCCcCcCCchhHHHHHHHHHHHHhc
Q 006510 407 IDDRLVAVGVIDILPRCLSS--KYLFW-DPDYAFLSLGKYSALQEISWVKENQ 456 (642)
Q Consensus 407 lDgkLIAVgViDiLp~~lSS--VY~fY-DPdy~~lSLGt~saL~EI~~ar~l~ 456 (642)
.+|++||++..-..+..... ++.+| +|+|....+|+..+-.-+++|+..+
T Consensus 47 ~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~ 99 (157)
T TIGR02406 47 EGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACER 99 (157)
T ss_pred CCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCC
Confidence 46899998766555544332 33444 9999999999999999999998764
No 35
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=32.74 E-value=1.6e+02 Score=25.24 Aligned_cols=53 Identities=11% Similarity=-0.024 Sum_probs=44.7
Q ss_pred EEeeCCeEEEEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhc
Q 006510 404 QYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQ 456 (642)
Q Consensus 404 ~YrlDgkLIAVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~ 456 (642)
+.++||+.+|.--...-++-+.-..++=+|++.-..+|.--+-.-+++|++.+
T Consensus 3 ~~~~~g~~~a~l~Y~~~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~ 55 (78)
T PF14542_consen 3 ELKDDGEEIAELTYREDGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENG 55 (78)
T ss_dssp EEESSTTEEEEEEEEESSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEEEeCCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Confidence 34567888888888777777888899999999999999999999999999986
No 36
>PRK10314 putative acyltransferase; Provisional
Probab=32.31 E-value=1.7e+02 Score=27.78 Aligned_cols=54 Identities=13% Similarity=-0.019 Sum_probs=38.8
Q ss_pred ceEEEEeeCCeEEEEEEEecCCCc-----ccceeeeeCCCcCcCCchhHHHHHHHHHHHHh
Q 006510 400 SFHQQYLIDDRLVAVGVIDILPRC-----LSSKYLFWDPDYAFLSLGKYSALQEISWVKEN 455 (642)
Q Consensus 400 s~h~~YrlDgkLIAVgViDiLp~~-----lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l 455 (642)
++|.-.+.+|++||++-+=...+. |..| +=+|+|....+|+-.+-.-++++++.
T Consensus 48 ~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv--~V~~~~rG~GiG~~Lm~~~~~~~~~~ 106 (153)
T PRK10314 48 NRHILGWKNDELVAYARILKSDDDLEPVVIGRV--IVSEALRGEKVGQQLMSKTLESCTRH 106 (153)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCCCEEEEEE--EECHHHhCCCHHHHHHHHHHHHHHHH
Confidence 688888889999998765222121 3333 44999999999988777777777764
No 37
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=30.87 E-value=5.7e+02 Score=29.85 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=44.2
Q ss_pred eCCeEEEEEE-Eec---CCC--cccceeeee-CCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecC
Q 006510 407 IDDRLVAVGV-IDI---LPR--CLSSKYLFW-DPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHS 473 (642)
Q Consensus 407 lDgkLIAVgV-iDi---Lp~--~lSSVY~fY-DPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~ 473 (642)
.+|++||++. ++. +++ .-+.++.+| ||+|....+|+..+-.-++++++.+ +.+.+|.-.-++
T Consensus 132 ~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G-----~~~i~L~V~~~N 200 (547)
T TIGR03103 132 ASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRG-----CAYMDLSVMHDN 200 (547)
T ss_pred CCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCC-----CCEEEEEEcCCC
Confidence 3699999874 232 122 123455444 9999999999998888899999985 888888765444
No 38
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=30.66 E-value=89 Score=28.40 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=27.2
Q ss_pred cceEEEEeeCCeEEEEEEEecCCCcccceeeeeCCCcC
Q 006510 399 GSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYA 436 (642)
Q Consensus 399 Gs~h~~YrlDgkLIAVgViDiLp~~lSSVY~fYDPdy~ 436 (642)
|.+..+||++|+|-+|=|.--.. .=|+++|+|=.
T Consensus 48 ~~~ieEyRv~G~l~~IkV~P~~G----~~Yyl~d~dg~ 81 (105)
T PF11191_consen 48 GSTIEEYRVNGQLYMIKVQPKAG----PPYYLVDPDGD 81 (105)
T ss_pred CcEEEEEEECCeEeeEEEEeCCC----CCEEEECCCCC
Confidence 47889999999999998875433 55999999863
No 39
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=30.25 E-value=62 Score=33.98 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=38.1
Q ss_pred eEEEEee-CCeEEEEEEEecCC--CcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeE
Q 006510 401 FHQQYLI-DDRLVAVGVIDILP--RCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGY 469 (642)
Q Consensus 401 ~h~~Yrl-DgkLIAVgViDiLp--~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGY 469 (642)
...--+. ||+++|+.+..-++ ++++--....||| ---|++-.|-. ++++.+. ..+.+|+-||+
T Consensus 181 ~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~---a~~G~~e~l~~-~~~~~~~--~~g~~~lnLg~ 246 (299)
T PF09924_consen 181 RGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD---APKGIYEFLNV-EFAEHLK--AEGVEYLNLGF 246 (299)
T ss_dssp EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT----STTHHHHHHH-HHHHHS----TT--EEE---
T ss_pred eEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC---CCCcHHHHHHH-HHHHhhh--hCCceEEEccc
Confidence 3444567 99999999999777 7777777788988 23588877743 3333332 12688888554
No 40
>PF06478 Corona_RPol_N: Coronavirus RPol N-terminus; InterPro: IPR009469 This domain represents the N-terminal region of the coronavirus RNA-directed RNA Polymerase.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0006351 transcription, DNA-dependent
Probab=25.28 E-value=19 Score=39.06 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=39.5
Q ss_pred CCeeEEEeCCeeeechhhhhhhccchhhhHHHHHHHHHHHHhHHHHHHHHh
Q 006510 586 ISNIVIRGQGTRVRYKDIQRVFGPIQRRSLESQLRKYMKVVGAELSERMVY 636 (642)
Q Consensus 586 l~~vlvl~~~s~~~y~~~~~~~~~~~~~~~e~~v~ey~~lVG~~~a~rml~ 636 (642)
|.+|||++.+.--.|=+-..|+.|+|+ +.+.+.|++| |+.++..||=
T Consensus 130 lkeILv~~g~c~~~yFd~k~WyDpVEN---~di~~vy~kL-G~iv~~a~L~ 176 (355)
T PF06478_consen 130 LKEILVTYGCCDESYFDNKDWYDPVEN---PDIHRVYAKL-GPIVNRAMLK 176 (355)
T ss_pred HHHHHHHhcCCcHHHcCcccCcCCccC---hHHHHHHHHH-HHHHHHHHHH
Confidence 678899998887777777789999998 8888999885 8888887763
No 41
>PRK05279 N-acetylglutamate synthase; Validated
Probab=25.27 E-value=2.1e+02 Score=32.08 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=42.1
Q ss_pred EeeCCeEEEEEEEecCCCc-ccceeee-eCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeE
Q 006510 405 YLIDDRLVAVGVIDILPRC-LSSKYLF-WDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYY 466 (642)
Q Consensus 405 YrlDgkLIAVgViDiLp~~-lSSVY~f-YDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyY 466 (642)
...||++||.+.+...+.. ..-+..+ =+|+|....+|+..+=.-+++|++.+ +...+
T Consensus 339 a~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g-----~~~l~ 397 (441)
T PRK05279 339 IERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLG-----LKRLF 397 (441)
T ss_pred EEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcC-----CCEEE
Confidence 3468999999887765542 2234433 49999999999998888888999885 55554
No 42
>PHA01807 hypothetical protein
Probab=25.00 E-value=2.1e+02 Score=27.68 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=48.0
Q ss_pred EeeCCeEEEEEEEecCCCc----cccee-eeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCcccc
Q 006510 405 YLIDDRLVAVGVIDILPRC----LSSKY-LFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRY 479 (642)
Q Consensus 405 YrlDgkLIAVgViDiLp~~----lSSVY-~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~CpKM~Y 479 (642)
...||+|||++.+-..+.. +-++. +|=+|+|....+|+.-+-.=|++|++.+ +..+.+.-=...-+.|+-
T Consensus 58 a~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G-----~~~l~l~v~~~n~~a~~~ 132 (153)
T PHA01807 58 VFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGN-----LPLIAFSHREGEGRYTIH 132 (153)
T ss_pred EEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCC-----CCEEEEEecCCcHHHHHH
Confidence 3469999999877333321 22221 3569999999999999999999999985 565544333333333433
Q ss_pred cccCCC
Q 006510 480 KAAYHP 485 (642)
Q Consensus 480 K~~f~P 485 (642)
=.+++|
T Consensus 133 y~~~~~ 138 (153)
T PHA01807 133 YRRVKP 138 (153)
T ss_pred HHhcCc
Confidence 334443
No 43
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.94 E-value=23 Score=35.70 Aligned_cols=17 Identities=35% Similarity=0.747 Sum_probs=14.9
Q ss_pred HhhhhccCCeeeccCCC
Q 006510 65 DRGWRRSGSFLYKPDME 81 (642)
Q Consensus 65 drGwRRSG~~~YKP~~~ 81 (642)
.+||||||+|+|+|+..
T Consensus 22 rks~sr~~ry~~~riLr 38 (184)
T COG3216 22 RKSFSRSGRYLYKRILR 38 (184)
T ss_pred hHHHHHHHHHHhhhhhh
Confidence 57899999999999754
Done!