Your job contains 1 sequence.
>006512
MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN
QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT
FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV
GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN
DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS
EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG
VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ
RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNEAGGDESDE
EDSDFVADKDDGGSPTDDSGEEDSDASESGGEKEKPAKKESKKESSSVKASTSKKKSRDG
DEDGKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMS
VEEREPYESKARADKKRYKDEISGYKNPKPMDIDSGNESDSA
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006512
(642 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2098413 - symbol:HMG "high mobility group" spe... 2086 2.5e-252 2
UNIPROTKB|Q9W602 - symbol:ssrp1 "FACT complex subunit SSR... 789 2.3e-93 2
ZFIN|ZDB-GENE-031118-9 - symbol:ssrp1a "structure specifi... 795 3.8e-93 2
UNIPROTKB|B6ZLK1 - symbol:SSRP1 "Structure-specific recog... 776 4.3e-92 2
UNIPROTKB|Q04678 - symbol:SSRP1 "FACT complex subunit SSR... 776 4.3e-92 2
UNIPROTKB|F6QYV9 - symbol:SSRP1 "Uncharacterized protein"... 768 6.2e-91 2
UNIPROTKB|I3LLA8 - symbol:SSRP1 "Uncharacterized protein"... 767 6.2e-91 2
ZFIN|ZDB-GENE-041008-209 - symbol:ssrp1b "structure speci... 779 8.0e-91 2
UNIPROTKB|F1Q2J2 - symbol:SSRP1 "Uncharacterized protein"... 767 8.0e-91 2
MGI|MGI:107912 - symbol:Ssrp1 "structure specific recogni... 766 8.0e-91 2
RGD|621143 - symbol:Ssrp1 "structure specific recognition... 766 8.0e-91 2
UNIPROTKB|Q04931 - symbol:Ssrp1 "FACT complex subunit SSR... 766 8.0e-91 2
UNIPROTKB|Q08945 - symbol:SSRP1 "FACT complex subunit SSR... 767 1.0e-90 2
FB|FBgn0010278 - symbol:Ssrp "Structure specific recognit... 747 3.5e-88 2
DICTYBASE|DDB_G0290331 - symbol:ssrp1 "FACT complex subun... 572 2.2e-82 2
WB|WBGene00001974 - symbol:hmg-4 species:6239 "Caenorhabd... 607 3.0e-75 3
POMBASE|SPBC609.05 - symbol:pob3 "FACT complex subunit Po... 720 3.7e-71 1
WB|WBGene00001973 - symbol:hmg-3 species:6239 "Caenorhabd... 588 2.0e-69 2
CGD|CAL0005561 - symbol:POB3 species:5476 "Candida albica... 692 3.5e-68 1
UNIPROTKB|Q5ALL8 - symbol:POB3 "FACT complex subunit POB3... 692 3.5e-68 1
SGD|S000004534 - symbol:POB3 "Subunit of the heterodimeri... 475 2.6e-67 2
UNIPROTKB|J9NYX4 - symbol:SSRP1 "Uncharacterized protein"... 525 2.6e-65 2
GENEDB_PFALCIPARUM|PF14_0393 - symbol:PF14_0393 "structur... 617 3.1e-60 1
UNIPROTKB|Q8IL56 - symbol:PF14_0393 "Structure specific r... 617 3.1e-60 1
ASPGD|ASPL0000002272 - symbol:AN6687 species:162425 "Emer... 567 6.1e-55 1
UNIPROTKB|E9PMD4 - symbol:SSRP1 "FACT complex subunit SSR... 389 5.7e-36 1
UNIPROTKB|E9PPZ7 - symbol:SSRP1 "FACT complex subunit SSR... 311 3.6e-27 1
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 237 4.2e-19 1
UNIPROTKB|G4MS97 - symbol:MGG_04489 "Non-histone chromoso... 229 3.1e-18 1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ... 224 1.1e-17 1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ... 213 1.7e-16 1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic... 208 5.8e-16 1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p... 208 5.8e-16 1
POMBASE|SPAC57A10.09c - symbol:nhp6 "High-mobility group ... 202 2.6e-15 1
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"... 183 2.9e-13 1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot... 183 2.9e-13 1
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3... 181 4.7e-13 1
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp... 181 4.7e-13 1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot... 180 6.1e-13 1
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p... 180 6.1e-13 1
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot... 180 6.1e-13 1
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g... 178 1.0e-12 1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot... 177 1.3e-12 1
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot... 177 1.3e-12 1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot... 177 1.3e-12 1
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot... 177 1.3e-12 1
DICTYBASE|DDB_G0270260 - symbol:nhp6 "HMG1/2 (high mobili... 177 1.3e-12 1
UNIPROTKB|F1NPU8 - symbol:HMGB2 "High mobility group prot... 169 9.3e-12 1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein... 169 9.3e-12 1
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot... 168 1.2e-11 1
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"... 168 1.2e-11 1
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot... 168 1.2e-11 1
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot... 168 1.2e-11 1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility... 168 1.2e-11 1
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec... 168 1.2e-11 1
RGD|1561694 - symbol:RGD1561694 "similar to High mobility... 168 1.2e-11 1
UNIPROTKB|F1MF42 - symbol:LOC618297 "Uncharacterized prot... 168 1.2e-11 1
RGD|1559962 - symbol:RGD1559962 "similar to High mobility... 166 2.0e-11 1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ... 165 2.5e-11 1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot... 165 2.5e-11 1
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot... 165 2.5e-11 1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot... 165 2.5e-11 1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot... 165 2.5e-11 1
RGD|1585821 - symbol:LOC680968 "similar to High mobility ... 165 2.5e-11 1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ... 165 2.5e-11 1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci... 165 2.5e-11 1
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein... 165 2.5e-11 1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot... 165 2.5e-11 1
WB|WBGene00001972 - symbol:hmg-1.2 species:6239 "Caenorha... 170 2.9e-11 1
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot... 164 3.2e-11 1
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro... 164 3.2e-11 1
UNIPROTKB|P26584 - symbol:HMGB2 "High mobility group prot... 163 4.1e-11 1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot... 163 4.1e-11 1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6... 163 4.1e-11 1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ... 163 4.1e-11 1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6... 163 4.1e-11 1
GENEDB_PFALCIPARUM|PFL0145c - symbol:PFL0145c "high mobil... 162 5.3e-11 1
UNIPROTKB|Q8I616 - symbol:HMGB1 "High mobility group prot... 162 5.3e-11 1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ... 159 1.1e-10 1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ... 158 1.4e-10 1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ... 158 1.4e-10 1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot... 157 1.8e-10 1
GENEDB_PFALCIPARUM|MAL8P1.72 - symbol:MAL8P1.72 "high mob... 157 1.8e-10 1
UNIPROTKB|Q8IB14 - symbol:PfHMGB2 "High mobility group pr... 157 1.8e-10 1
UNIPROTKB|D6R9A6 - symbol:HMGB2 "High mobility group prot... 155 3.0e-10 1
UNIPROTKB|E1BIF8 - symbol:E1BIF8 "Uncharacterized protein... 153 4.9e-10 1
UNIPROTKB|J9P699 - symbol:HMGB1 "High mobility group prot... 150 1.0e-09 1
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot... 150 1.0e-09 1
UNIPROTKB|Q5T7C6 - symbol:HMGB1 "High mobility group prot... 150 1.0e-09 1
UNIPROTKB|D4A2L7 - symbol:D4A2L7 "Uncharacterized protein... 150 1.0e-09 1
UNIPROTKB|Q5T7C0 - symbol:HMGB1 "High mobility group prot... 150 1.0e-09 1
RGD|1588759 - symbol:Hmgb1-ps3 "high mobility group box 1... 154 1.2e-09 1
UNIPROTKB|F1N1P2 - symbol:F1N1P2 "Uncharacterized protein... 147 2.2e-09 1
TAIR|locus:505006135 - symbol:HMGB2 "high mobility group ... 147 2.2e-09 1
RGD|1560584 - symbol:RGD1560584 "similar to High mobility... 149 2.7e-09 1
FB|FBgn0011764 - symbol:Dsp1 "Dorsal switch protein 1" sp... 165 4.3e-09 1
ZFIN|ZDB-GENE-030131-8480 - symbol:hmgb1b "high-mobility ... 143 5.9e-09 1
RGD|2319002 - symbol:LOC100365478 "high-mobility group bo... 143 5.9e-09 1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ... 151 8.1e-09 1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ... 151 8.1e-09 1
WARNING: Descriptions of 108 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2098413 [details] [associations]
symbol:HMG "high mobility group" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0035101 "FACT complex" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010050 "vegetative phase
change" evidence=RCA] [GO:0010051 "xylem and phloem pattern
formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048439 "flower morphogenesis"
evidence=RCA] [GO:0048519 "negative regulation of biological
process" evidence=RCA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:CP002686
GenomeReviews:BA000014_GR Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0010228 GO:GO:0005719 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:D13491 EMBL:AP002057
EMBL:BT002507 EMBL:AK318679 EMBL:AK221855 IPI:IPI00547320
IPI:IPI00931095 PIR:S35511 RefSeq:NP_189515.1 UniGene:At.21931
UniGene:At.48716 ProteinModelPortal:Q05153 SMR:Q05153 STRING:Q05153
PaxDb:Q05153 PRIDE:Q05153 EnsemblPlants:AT3G28730.1 GeneID:822505
KEGG:ath:AT3G28730 TAIR:At3g28730 HOGENOM:HOG000241245
InParanoid:Q05153 PhylomeDB:Q05153 ProtClustDB:CLSN2684068
Genevestigator:Q05153 GermOnline:AT3G28730 Uniprot:Q05153
Length = 646
Score = 2086 (739.4 bits), Expect = 2.5e-252, Sum P(2) = 2.5e-252
Identities = 399/497 (80%), Positives = 438/497 (88%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M DG SFNNISL GRGG NPG LKI SG I WKK GGGKAVEVD+ DI V+W KV ++N
Sbjct: 1 MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSN 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
QLGV+TKDGLYYKF GFRDQDV +L++FFQS++G +P+EKQLSVSGRNWGEVDL+GN LT
Sbjct: 61 QLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLT 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F+VG KQAFEVSLADVSQTQLQGKNDV LEFHVDDT GANEKDSLMEISFHIPNSNTQFV
Sbjct: 121 FLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFV 180
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
GDEN PP+QVF D I++MADV G E+AVVTFE IAILTPRGRY+VELHLSFLRLQGQAN
Sbjct: 181 GDENRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQAN 240
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
DFKIQYSSVVRLFLLPKSNQPHTFVV++LDPPIRKGQT+YPHIV+QFETD VV+SEL +S
Sbjct: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSIS 300
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
+EL+NTK+KDKLE SYKGLIHEVFTT+LR LSGAKITKPGKFRS+QDG+AVKSSLKAEDG
Sbjct: 301 DELMNTKFKDKLERSYKGLIHEVFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDG 360
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
VLYPLEK FFFLPKPPTLILH+EIDYVEFERHAAGG+NMHYFDLLIRLKT+ EHLFRNIQ
Sbjct: 361 VLYPLEKGFFFLPKPPTLILHDEIDYVEFERHAAGGANMHYFDLLIRLKTDHEHLFRNIQ 420
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQE-DDDDAVDPHLERIKNXXXXXXXX 479
RNEYHNL+ FIS KGLKIMNLG T DGVAAVL + DDDDAVDPHL RI+N
Sbjct: 421 RNEYHNLYTFISSKGLKIMNLGGAGTADGVAAVLGDNDDDDAVDPHLTRIRNQAADESDE 480
Query: 480 XXXXXFVADKDDGGSPT 496
+ + DDGGSPT
Sbjct: 481 EDEDFVMGEDDDGGSPT 497
Score = 367 (134.2 bits), Expect = 2.5e-252, Sum P(2) = 2.5e-252
Identities = 63/87 (72%), Positives = 82/87 (94%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKRAMSGF+FFSQMER+NIKK +PGIAF +VG+VLG++W++MS +++EPYE+KA+ D
Sbjct: 559 PNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVD 618
Query: 615 KKRYKDEISGYKNPKPMDIDSGNESDS 641
K+RYKDEIS YKNP+PM++DSGN+SDS
Sbjct: 619 KQRYKDEISDYKNPQPMNVDSGNDSDS 645
>UNIPROTKB|Q9W602 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
Length = 693
Score = 789 (282.8 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
Identities = 175/470 (37%), Positives = 261/470 (55%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M D FN+I +G N G+L++ + +K GK + DIA V W +V +
Sbjct: 1 MADTLEFNDIYQEVKGSMNDGRLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
+ + T G YK+ GFR+ + L ++F+S+F + EK L V G NWG V G +L+
Sbjct: 61 GIKLLTNGGHVYKYDGFRETEYDKLFDYFKSHFSVELVEKDLCVKGWNWGSVRFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + AFE+ L++VSQ GKN+V LEFH +D + + SLMEI F++P TQ
Sbjct: 121 FDIGDQPAFELPLSNVSQCTT-GKNEVTLEFHQND----DSEVSLMEIRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
D+ + F ++S ADV +AV F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -DDGGDSVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L MS
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDMTLTLNMS 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ KL+ S G ++E+ + +++ L KIT PG F + S KA G
Sbjct: 291 EEEVERRFEGKLKKSMSGCLYEMVSRVMKALVNRKITVPGNFLGHSGSQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEITCVNFAR---GTTTTRSFDFEIETKQGSQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLSIKNRGLKEGMKPAYDDYADSDEDQHDAYLERMK 457
Score = 160 (61.4 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P APKR MS ++ + RE IK NPGI+ TD+ + GE WK MS +++E ++ +A
Sbjct: 538 PGAPKRPMSAYMLWLNASREKIKSENPGISITDLSKKAGEIWKNMSRDKKEEWDRRAEEA 597
Query: 615 KKRYKDEISGYKNPKPMD 632
K+ Y+ + Y P +
Sbjct: 598 KRDYEKAMKEYNTSAPTE 615
>ZFIN|ZDB-GENE-031118-9 [details] [associations]
symbol:ssrp1a "structure specific recognition protein
1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
Bgee:F1QEB4 Uniprot:F1QEB4
Length = 705
Score = 795 (284.9 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
Identities = 175/495 (35%), Positives = 265/495 (53%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M D FN+I +G N G+L+ + +K GK + D++ W +V +
Sbjct: 1 MGDTLEFNDIHQEVKGSWNDGRLRFSKQTVVYKSHKTGKVDSIPAPDLSEAQWRRVCLGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + T G YK+ GF++ D ++ FF++N+ + EEK + V G NWG G++L+
Sbjct: 61 GLKLATSTGHIYKYDGFKETDYEKISAFFKANYKVELEEKDMCVKGWNWGTAKFAGSLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F V FE+ L+ VSQ GKN+V +EFH +D + + SLME+ F++P NT
Sbjct: 121 FDVSDSPVFEIPLSSVSQCAT-GKNEVTVEFHQND----DAEVSLMEVRFYVP-PNT--- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
GD+ P + F I+S ADV +AV F+ + LTPRGRY + ++ +FL L G+
Sbjct: 172 GDDGSDPVEAFAQNILSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTF 231
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L MS
Sbjct: 232 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLALNMS 291
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
E+ + +Y+ KL + G ++E+ + +++ L KIT PG F+ + + KA G
Sbjct: 292 EDEVEKRYEGKLSKNMSGPLYEIVSRVMKALVNRKITVPGNFQGHSGSQCITCAYKASSG 351
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP + EEI V F R G + FD I K + F NI+
Sbjct: 352 LLYPLERGFIYVHKPPVHLRFEEISCVNFAR---GTTTTRSFDFEIETKQNNQFTFSNIE 408
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIKNXXXXXXXXX 480
R EY LFDF++ K L I N G + G A + D+D D +LER+K
Sbjct: 409 REEYGKLFDFVNAKKLTIKNRGFKEGMKG-AEDYSDSDEDQHDAYLERMKEEGKIREEGD 467
Query: 481 XXXXFVADKDDGGSP 495
D D+ +P
Sbjct: 468 GSDDSEGDSDESFNP 482
Score = 152 (58.6 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 557 APKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKK 616
APKR MS ++ + RE IK NPGI+ T++ + GE WK++ +++E ++ KA K+
Sbjct: 545 APKRPMSAYMLWLNGNRERIKSENPGISITEISKKAGEMWKQLGKDKKEEWDKKAEEAKR 604
Query: 617 RYKDEISGYK 626
+Y+ + YK
Sbjct: 605 QYEKAMKEYK 614
>UNIPROTKB|B6ZLK1 [details] [associations]
symbol:SSRP1 "Structure-specific recognition protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887
Pfam:PF00505 Pfam:PF03531 GO:GO:0005634 GO:GO:0005737
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG IPI:IPI00582237 UniGene:Gga.2985
HOVERGEN:HBG002932 EMBL:AADN02050757 EMBL:AADN02050758
EMBL:AB465209 STRING:B6ZLK1 Ensembl:ENSGALT00000012159
Ensembl:ENSGALT00000038738 Uniprot:B6ZLK1
Length = 706
Score = 776 (278.2 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
Identities = 170/473 (35%), Positives = 268/473 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M D FN I +G N G+L++ + +K GK + ++A W +V +
Sbjct: 1 MADTLEFNEIYQEVKGSMNDGRLRLSRQGVIFKNSKTGKVDNIQASELAEGVWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDLCVKGWNWGTVRFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G++ FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGEQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQE---DDDDAVDPHLERIK 470
R EY LFDF++ K L I N G +K +G+ E D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRG-LK--EGMKQSYDEYADSDEDQHDAYLERMK 457
Score = 161 (61.7 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR MS ++ + RE IK +PGI+ TD+ + GE WK MS E++E ++ KA
Sbjct: 542 PNAPKRPMSAYMLWLNANREKIKSDHPGISITDLSKKAGELWKAMSKEKKEEWDRKAEDA 601
Query: 615 KKRYKDEISGY 625
K+ Y+ + Y
Sbjct: 602 KRDYEKAMKEY 612
>UNIPROTKB|Q04678 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005694 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790 EMBL:AJ719641
EMBL:L08815 EMBL:D14315 IPI:IPI00582237 PIR:S78050
RefSeq:NP_001005796.1 UniGene:Gga.2985 ProteinModelPortal:Q04678
STRING:Q04678 PRIDE:Q04678 GeneID:396509 KEGG:gga:396509 CTD:6749
HOVERGEN:HBG002932 InParanoid:Q04678 OrthoDB:EOG41VK2K
NextBio:20816548 Uniprot:Q04678
Length = 706
Score = 776 (278.2 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
Identities = 170/473 (35%), Positives = 268/473 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M D FN I +G N G+L++ + +K GK + ++A W +V +
Sbjct: 1 MADTLEFNEIYQEVKGSMNDGRLRLSRQGVIFKNSKTGKVDNIQASELAEGVWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDLCVKGWNWGTVRFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G++ FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGEQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQE---DDDDAVDPHLERIK 470
R EY LFDF++ K L I N G +K +G+ E D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRG-LK--EGMKQSYDEYADSDEDQHDAYLERMK 457
Score = 161 (61.7 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR MS ++ + RE IK +PGI+ TD+ + GE WK MS E++E ++ KA
Sbjct: 542 PNAPKRPMSAYMLWLNANREKIKSDHPGISITDLSKKAGELWKAMSKEKKEEWDRKAEDA 601
Query: 615 KKRYKDEISGY 625
K+ Y+ + Y
Sbjct: 602 KRDYEKAMKEY 612
>UNIPROTKB|F6QYV9 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 OMA:PVEVKKG EMBL:DAAA02041723
IPI:IPI00699243 UniGene:Bt.5242 Ensembl:ENSBTAT00000000486
Uniprot:F6QYV9
Length = 709
Score = 768 (275.4 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
Identities = 165/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN++ +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEKVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMK 457
Score = 158 (60.7 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR MS ++ + RE IK +PGI+ TD+ + GE WK MS E++E ++ KA
Sbjct: 544 PNAPKRPMSAYMLWLNASREKIKSDHPGISVTDLSKKAGEIWKGMSKEKKEEWDRKAEDA 603
Query: 615 KKRYKDEISGYK 626
++ Y+ + Y+
Sbjct: 604 RREYEKAMKEYE 615
Score = 39 (18.8 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
Identities = 16/70 (22%), Positives = 24/70 (34%)
Query: 574 ENIKKSNPGIAFTDVGRVLGERWKKMSV--EEREPYESKARADKKRYKDEISGYKNPKPM 631
E + NPG DV S E E K R K+ K KP+
Sbjct: 477 ETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDREEKKRKQLKKAKMAKDRKSRKKPL 536
Query: 632 DIDSGNESDS 641
++ G + ++
Sbjct: 537 EVKKGKDPNA 546
>UNIPROTKB|I3LLA8 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 KO:K09272 InterPro:IPR024954 OMA:PVEVKKG CTD:6749
EMBL:FP312857 RefSeq:XP_003353912.1 Ensembl:ENSSSCT00000023703
GeneID:100624907 KEGG:ssc:100624907 Uniprot:I3LLA8
Length = 709
Score = 767 (275.1 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
Identities = 165/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN++ +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMK 457
Score = 159 (61.0 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR MS ++ + RE IK +PGI+ TD+ + GE WK MS E++E ++ KA
Sbjct: 544 PNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA 603
Query: 615 KKRYKDEISGYK 626
++ Y+ + Y+
Sbjct: 604 RREYEKAMKEYE 615
>ZFIN|ZDB-GENE-041008-209 [details] [associations]
symbol:ssrp1b "structure specific recognition
protein 1b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
ZFIN:ZDB-GENE-041008-209 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX511158
IPI:IPI00502576 PRIDE:F6NLJ7 Ensembl:ENSDART00000131296 Bgee:F6NLJ7
Uniprot:F6NLJ7
Length = 703
Score = 779 (279.3 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 165/470 (35%), Positives = 256/470 (54%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M+D FN I +G N G+L+ + +K GK + ++ W +V +
Sbjct: 1 MSDTLEFNEIYQEVKGSWNDGRLRFSKQTVVYKNSKTGKVDTIPVPELTQAQWRRVCLGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
+ + T G YK+ GF+D D+ ++ +F+ N+ + EK + V G NWG NG +L+
Sbjct: 61 GIKLWTSTGHIYKYDGFKDADLEKISEYFKDNYKVELTEKDMCVKGWNWGTAKFNGPLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F V FE+ L+ VSQ GKN+V +EFH +D T SLME+ F++P +
Sbjct: 121 FDVNDSPTFEIPLSSVSQCTT-GKNEVTVEFHQNDDTEV----SLMEVRFYVPPTT---- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
GDE P + F ++S ADV +AV F + LTPRGRY + ++ +FL L G+
Sbjct: 172 GDEGSDPVEAFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 231
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F + + L M+
Sbjct: 232 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEETISLTLNMN 291
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
E+ + +++ KL + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 292 EDEVERRFEGKLNKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 351
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP + EEI V F R G + FD I K ++ F +I+
Sbjct: 352 LLYPLERGFIYVHKPPVHLRFEEIACVNFAR---GTTTTRSFDFEIETKQGNQYTFSSIE 408
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + G + + D+D D +LER+K
Sbjct: 409 REEYGKLFDFVNAKKLSIKNRGFKEGMKGNDDMYSDSDEDQHDAYLERMK 458
Score = 146 (56.5 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 557 APKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKK 616
APKR MS ++ + R+ IK NPGI+ T++ + GE WK++ +++E ++ KA KK
Sbjct: 542 APKRPMSAYMLWLNSSRDRIKSENPGISITEISKKAGEMWKQLGKDKKEEWDGKAEEAKK 601
Query: 617 RYKDEISGYK 626
Y + Y+
Sbjct: 602 EYDRAMREYR 611
>UNIPROTKB|F1Q2J2 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG EMBL:AAEX03011448
Ensembl:ENSCAFT00000012707 Uniprot:F1Q2J2
Length = 710
Score = 767 (275.1 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 165/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN++ +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMK 457
Score = 158 (60.7 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR MS ++ + RE IK +PGI+ TD+ + GE WK MS E++E ++ KA
Sbjct: 543 PNAPKRPMSAYMLWLNASREKIKADHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA 602
Query: 615 KKRYKDEISGYK 626
++ Y+ + Y+
Sbjct: 603 RREYEKAMKEYE 614
>MGI|MGI:107912 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 MGI:MGI:107912 Pfam:PF00505
Pfam:PF03531 GO:GO:0005737 GO:GO:0005694 GO:GO:0005730
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
OMA:PVEVKKG CTD:6749 HOVERGEN:HBG002932 OrthoDB:EOG41VK2K
EMBL:S50213 EMBL:AK146446 EMBL:AK146585 EMBL:AK146607 EMBL:AK151584
EMBL:AK158552 EMBL:BC042502 EMBL:BC096682 IPI:IPI00407571
IPI:IPI00652593 PIR:A41265 RefSeq:NP_001129553.1 RefSeq:NP_892035.2
UniGene:Mm.219793 ProteinModelPortal:Q08943 SMR:Q08943
IntAct:Q08943 STRING:Q08943 PhosphoSite:Q08943 PaxDb:Q08943
PRIDE:Q08943 Ensembl:ENSMUST00000077798 Ensembl:ENSMUST00000168266
GeneID:20833 KEGG:mmu:20833 NextBio:299579 Bgee:Q08943
CleanEx:MM_SSRP1 Genevestigator:Q08943
GermOnline:ENSMUSG00000027067 Uniprot:Q08943
Length = 708
Score = 766 (274.7 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 166/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN+I +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQHDAYLERMK 457
Score = 159 (61.0 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR MS ++ + RE IK +PGI+ TD+ + GE WK MS E++E ++ KA
Sbjct: 544 PNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA 603
Query: 615 KKRYKDEISGYK 626
++ Y+ + Y+
Sbjct: 604 RREYEKAMKEYE 615
Score = 56 (24.8 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 577 KKSNP--GIAFTDVGRVLGERWKK---MSVEEREPYESKARADKKRYKDEISGYKNPKPM 631
KKS P G + R L + +K +S +E E+K++ ++R +D + P
Sbjct: 639 KKSTPSRGSSSKSSSRQLSDSFKSKEFVSSDESSSGENKSKKKRRRSEDSEEELASTPPS 698
Query: 632 DIDSGNESD 640
DS + SD
Sbjct: 699 SEDSASGSD 707
>RGD|621143 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;NAS] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 766 (274.7 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 166/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN+I +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQHDAYLERMK 457
Score = 159 (61.0 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR MS ++ + RE IK +PGI+ TD+ + GE WK MS E++E ++ KA
Sbjct: 544 PNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA 603
Query: 615 KKRYKDEISGYK 626
++ Y+ + Y+
Sbjct: 604 RREYEKAMKEYE 615
>UNIPROTKB|Q04931 [details] [associations]
symbol:Ssrp1 "FACT complex subunit SSRP1" species:10116
"Rattus norvegicus" [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 766 (274.7 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 166/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN+I +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQHDAYLERMK 457
Score = 159 (61.0 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR MS ++ + RE IK +PGI+ TD+ + GE WK MS E++E ++ KA
Sbjct: 544 PNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA 603
Query: 615 KKRYKDEISGYK 626
++ Y+ + Y+
Sbjct: 604 RREYEKAMKEYE 615
>UNIPROTKB|Q08945 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005694 GO:GO:0005654
GO:GO:0016032 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 OMA:PVEVKKG CTD:6749
HOVERGEN:HBG002932 OrthoDB:EOG41VK2K EMBL:M86737 EMBL:BC005116
EMBL:BC091486 IPI:IPI00005154 PIR:A41976 RefSeq:NP_003137.1
UniGene:Hs.523680 ProteinModelPortal:Q08945 SMR:Q08945 DIP:DIP-169N
IntAct:Q08945 MINT:MINT-5004485 STRING:Q08945 PhosphoSite:Q08945
DMDM:730840 PaxDb:Q08945 PeptideAtlas:Q08945 PRIDE:Q08945
DNASU:6749 Ensembl:ENST00000278412 GeneID:6749 KEGG:hsa:6749
UCSC:uc001njt.3 GeneCards:GC11M057093 HGNC:HGNC:11327 HPA:HPA002697
MIM:604328 neXtProt:NX_Q08945 PharmGKB:PA36151 InParanoid:Q08945
PhylomeDB:Q08945 ChiTaRS:SSRP1 GenomeRNAi:6749 NextBio:26328
PMAP-CutDB:Q08945 ArrayExpress:Q08945 Bgee:Q08945 CleanEx:HS_SSRP1
Genevestigator:Q08945 GermOnline:ENSG00000149136 Uniprot:Q08945
Length = 709
Score = 767 (275.1 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
Identities = 165/470 (35%), Positives = 264/470 (56%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
M + FN++ +G N G+L++ I +K GK + ++ W +V +
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L + TK+G YK+ GFR+ + L++FF++++ + EK L V G NWG V G +L+
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F +G + FE+ L++VSQ GKN+V LEFH +D + + SLME+ F++P TQ
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND----DAEVSLMEVRFYVPP--TQ-- 171
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
++ P + F ++S ADV +A+ F + LTPRGRY + ++ +FL L G+
Sbjct: 172 -EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L F D + L M+
Sbjct: 231 DYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMN 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
EE + +++ +L + G ++E+ + +++ L KIT PG F+ + S KA G
Sbjct: 291 EEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
+LYPLE+ F ++ KPP I +EI +V F R G + FD I K ++ F +I+
Sbjct: 351 LLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQGTQYTFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
R EY LFDF++ K L I N G + + + D+D D +LER+K
Sbjct: 408 REEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMK 457
Score = 157 (60.3 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR MS ++ + RE IK +PGI+ TD+ + GE WK MS E++E ++ KA
Sbjct: 544 PNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA 603
Query: 615 KKRYKDEISGYK 626
++ Y+ + Y+
Sbjct: 604 RRDYEKAMKEYE 615
>FB|FBgn0010278 [details] [associations]
symbol:Ssrp "Structure specific recognition protein"
species:7227 "Drosophila melanogaster" [GO:0000217 "DNA secondary
structure binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS;NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
[GO:0003727 "single-stranded RNA binding" evidence=NAS] [GO:0005730
"nucleolus" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001672 "regulation of chromatin assembly or
disassembly" evidence=IMP] [GO:0035101 "FACT complex"
evidence=IDA;TAS] [GO:0043621 "protein self-association"
evidence=IDA] [GO:0031492 "nucleosomal DNA binding" evidence=IDA]
[GO:0051101 "regulation of DNA binding" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:AE013599
GO:GO:0005694 GO:GO:0022008 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
GO:GO:0003723 GO:GO:0043621 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051101 GO:GO:0031492
GeneTree:ENSGT00700000104547 GO:GO:0001672 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:L08825 EMBL:X68408
EMBL:BT004831 PIR:A48217 PIR:S33688 RefSeq:NP_523830.2
UniGene:Dm.3383 PDB:1WXL PDBsum:1WXL ProteinModelPortal:Q05344
SMR:Q05344 IntAct:Q05344 STRING:Q05344 PaxDb:Q05344
EnsemblMetazoa:FBtr0072242 GeneID:37767 KEGG:dme:Dmel_CG4817
CTD:37767 FlyBase:FBgn0010278 InParanoid:Q05344 OrthoDB:EOG40CFZ2
PhylomeDB:Q05344 EvolutionaryTrace:Q05344 GenomeRNAi:37767
NextBio:805310 Bgee:Q05344 GermOnline:CG4817 Uniprot:Q05344
Length = 723
Score = 747 (268.0 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 179/470 (38%), Positives = 254/470 (54%)
Query: 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTN 60
MTD +N+I+ RG G+LK+ I +K GK ++ DI + K T
Sbjct: 1 MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTW 60
Query: 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLT 120
L V TK G+ ++FTGFRD + L F ++ + EK++ V G NWG G++L+
Sbjct: 61 GLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLS 120
Query: 121 FMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
F K FEV L+ VSQ + GKN+V LEFH +D L+E+ FHIP +
Sbjct: 121 FDKESKTIFEVPLSHVSQC-VTGKNEVTLEFHQNDDAPVG----LLEMRFHIPAVES--- 172
Query: 181 GDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 240
+E+ P F +MS A V + E++ F I ILTPRGRY +++ +F +L G+
Sbjct: 173 AEED--PVDKFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTF 230
Query: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMS 300
D+KI SV+RLF+LP + F V++LDPPI++GQT Y ++VL F D EL S
Sbjct: 231 DYKIPMDSVLRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFS 290
Query: 301 EELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDG 360
E L KY+ KLE G ++EV +++ L G KIT PG F AV S KA G
Sbjct: 291 EAELRDKYEGKLEKEISGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAG 350
Query: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
LYPLE+ F ++ KPP I EEI V F R +GGS FD + LK H+F +I+
Sbjct: 351 YLYPLERGFIYIHKPPLHIRFEEISSVNFAR--SGGSTRS-FDFEVTLKNGTVHIFSSIE 407
Query: 421 RNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
+ EY LFD+I+ K L + N+G K+ D+++ D +L R+K
Sbjct: 408 KEEYAKLFDYITQKKLHVSNMGKDKSGYKDVDFGDSDNENEPDAYLARLK 457
Score = 153 (58.9 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 558 PKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKR 617
PKRA + F+ + RE+IK+ NPGI T++ + GE WK++ +++ +E A DK+R
Sbjct: 555 PKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQR 612
Query: 618 YKDEISGYKNPKPMDIDSGNE 638
Y DE+ YK P+ DS NE
Sbjct: 613 YHDEMRNYK-PEAGG-DSDNE 631
Score = 42 (19.8 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 619 KDEISGYKNPKPMDIDSGNESDS 641
KD+ SGYK+ D D+ NE D+
Sbjct: 430 KDK-SGYKDVDFGDSDNENEPDA 451
Score = 41 (19.5 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 593 GERWKKMSVEEREPYESK--ARADKKRYKDEIS 623
G+ KK + E EP ES+ + A + +DE S
Sbjct: 690 GDAKKKKAKSESEPEESEEDSNASDEDEEDEAS 722
>DICTYBASE|DDB_G0290331 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0035101 "FACT complex" evidence=ISS] [GO:0001672 "regulation of
chromatin assembly or disassembly" evidence=ISS] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000969
PRINTS:PR00887 dictyBase:DDB_G0290331 Pfam:PF03531 GO:GO:0005694
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GenomeReviews:CM000154_GR
EMBL:AAFI02000162 GO:GO:0001672 GO:GO:0035101 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
OMA:FQKDEET RefSeq:XP_635805.1 HSSP:Q04636
ProteinModelPortal:Q54G78 STRING:Q54G78 PRIDE:Q54G78
EnsemblProtists:DDB0216434 GeneID:8627610 KEGG:ddi:DDB_G0290331
ProtClustDB:CLSZ2434425 Uniprot:Q54G78
Length = 527
Score = 572 (206.4 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 120/286 (41%), Positives = 176/286 (61%)
Query: 182 DENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAND 241
+E + F+ IM+ +D+ + +++V F I LTPRGR +E++ +FL+L G+ +D
Sbjct: 213 EEEISALEQFQQTIMNKSDMVSNVGKSLVVFSAIQFLTPRGRIDIEMYPTFLKLHGKTHD 272
Query: 242 FKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSE 301
+K+ Y S+ RLF + +Q H F +++LDPPIR+GQT Y H+V+QF+ + + EL +++
Sbjct: 273 YKVPYESISRLFQFFRPDQKHIFFIISLDPPIRQGQTKYAHLVIQFQAEENIHLELNLTD 332
Query: 302 ELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGV 361
EL K+KD+L P G + + IL+ L+G KIT PG F+S ++K SLKA +G
Sbjct: 333 EL-QQKFKDQLSPIMNGNANALICKILKALTGKKITIPGNFQSDSGANSIKCSLKANEGY 391
Query: 362 LYPLEKSFFFLPKPPTLILHEEIDYVEFERHAA----GGSNMHYFDLLIRLKTEQEHLFR 417
LYPLE+ FFF+ KPPT I E+I +EF R+ A GGSN FDL I LK F
Sbjct: 392 LYPLERCFFFVHKPPTYIKFEDISNIEFARYGAPSVRGGSN-RTFDLSINLKNSTSIQFV 450
Query: 418 NIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVD 463
NIQR EY +LF+F+ K L I+N T G A ++ +DD D D
Sbjct: 451 NIQREEYPSLFNFLKEKKLSILN----PVTTGPAMIIDDDDSDDDD 492
Score = 273 (101.2 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 71/193 (36%), Positives = 102/193 (52%)
Query: 7 FNNISLGGR-GGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKV-PRTNQLGV 64
FNNISLGGR GT G LK + I+WK GK V DI W +V PR QL +
Sbjct: 11 FNNISLGGRISGTR-GILKFTTNNITWKS-ENGKIETVSSSDIKRANWARVTPRIFQLIL 68
Query: 65 RTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEK-QLSVSGRNWGEVDLNGNMLTFMV 123
K G KF GF++QD + + + +SP E +LS G NWGEV +NG M+ F
Sbjct: 69 SIKGGATVKFDGFKEQDYEVVRKYLSDQYNVSPLEIIELSSKGCNWGEVKVNGPMIQFTT 128
Query: 124 GQ-KQAFEVSLADVSQTQL--QGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV 180
K FE +++VSQ+ + KN++ LEFH D ++ ++++E+ F P ++
Sbjct: 129 DHGKVGFEFPISEVSQSVIGANNKNELTLEFHHDKAMD-DDDETMVEMRFFTPIRPSK-E 186
Query: 181 GDENHPPAQVFRD 193
G+E +V D
Sbjct: 187 GEEGGKEKKVGED 199
>WB|WBGene00001974 [details] [associations]
symbol:hmg-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0040011 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0007276
EMBL:FO081094 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 OMA:PVEVKKG PIR:T16908 RefSeq:NP_498633.1
ProteinModelPortal:P41848 SMR:P41848 DIP:DIP-26608N
MINT:MINT-1083096 STRING:P41848 PaxDb:P41848
EnsemblMetazoa:T20B12.8 GeneID:176052 KEGG:cel:CELE_T20B12.8
UCSC:T20B12.8 CTD:176052 WormBase:T20B12.8 InParanoid:P41848
NextBio:890908 Uniprot:P41848
Length = 697
Score = 607 (218.7 bits), Expect = 3.0e-75, Sum P(3) = 3.0e-75
Identities = 140/445 (31%), Positives = 234/445 (52%)
Query: 21 GQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQ 80
G LK+ +++K GGK+V V DI + W K+ L V DG ++F GF+D
Sbjct: 20 GTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKPGLRVGLNDGGAHRFGGFKDT 79
Query: 81 DVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQ 140
D+ + +F SN+ S ++ L + G N+G+ ++ G + F K FE+ +VS
Sbjct: 80 DLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVEFSWEDKPIFEIPCTNVSNV- 138
Query: 141 LQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMAD 200
+ KN+ +LEFH +D + K LME+ FH+P +E+ + F+ +++ A
Sbjct: 139 IANKNEAVLEFHQND----DSKVQLMEMRFHMP---IDLENEEDADKVEEFKKAVLAYAG 191
Query: 201 VGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQ 260
+ A E+ + I TPRGRY ++++ + + L G+ D+KI S+ RLFL+P +
Sbjct: 192 LEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPIKSINRLFLVPHKDG 251
Query: 261 PHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLI 320
H + V++L+PPIR+GQT Y +++ +F D EL +++E L + L G I
Sbjct: 252 RHVYFVLSLNPPIRQGQTRYSYLIFEFGKDEEQDLELALTDEQLESS-NGNLRRDMTGPI 310
Query: 321 HEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLIL 380
+E + + + + KIT PG+F + A++ + + G+LYP+EK F F+ KP I
Sbjct: 311 YETISILFKSICNLKITVPGRFLGSSGTPAIQCTHRQNPGLLYPMEKGFLFIHKPAMYIR 370
Query: 381 HEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMN 440
EEI F R + G+ FD I LK F +++ E + LFD+++ K +KI N
Sbjct: 371 FEEISSCHFAR-SDSGTVTRTFDFEIDLKYGGPLTFNAMEKEENNKLFDYLNKKNIKIRN 429
Query: 441 LGDMKTTDGVAAVLQEDDDDAVDPH 465
++ T VA + DD +DP+
Sbjct: 430 SQRVENT--VA----DSSDDEIDPY 448
Score = 143 (55.4 bits), Expect = 3.0e-75, Sum P(3) = 3.0e-75
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKRA S ++ + R +K+ +A DV + G +WK MS ++++ +E KA D
Sbjct: 553 PNAPKRATSAYMQWFLASRNELKEDGDSVA--DVAKKGGAKWKTMSSDDKKKWEEKAEED 610
Query: 615 KKRYKDEISGY-KNPKPMDIDSGNESDSA 642
K RY+ E+ Y KN P + S ++
Sbjct: 611 KSRYEKEMKEYRKNGPPSSSSKPSSSKTS 639
Score = 47 (21.6 bits), Expect = 3.4e-65, Sum P(3) = 3.4e-65
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 605 EPYESKARADKKRYKDEISGYKNPKPMD-IDSGNESDSA 642
E Y+ KK+ E S +P D DSG+E DS+
Sbjct: 469 EDYDLDKDIKKKKEDKESSEGTGSEPDDEYDSGSEQDSS 507
Score = 45 (20.9 bits), Expect = 5.6e-65, Sum P(3) = 5.6e-65
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 603 EREPYESKARADKKRYKDEISGYKNPKPMDIDSGNESDSA 642
+R E K + +KK +++ G K K D ++ + SA
Sbjct: 523 KRRKGEPKEKREKKEKREKKEGKKGKKDKDPNAPKRATSA 562
Score = 40 (19.1 bits), Expect = 3.0e-75, Sum P(3) = 3.0e-75
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 13 GGRGGTNPGQLKIYSGKISWKKLGGGKAVEV 43
G +GG + K+ W+KLG + V
Sbjct: 33 GDKGGKSVNVTGSDIDKLKWQKLGNKPGLRV 63
>POMBASE|SPBC609.05 [details] [associations]
symbol:pob3 "FACT complex subunit Pob3" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=ISO] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IMP] [GO:0030702
"chromatin silencing at centromere" evidence=IMP] [GO:0034613
"cellular protein localization" evidence=IMP] [GO:0035101 "FACT
complex" evidence=IDA] [GO:0043486 "histone exchange" evidence=IC]
[GO:0043596 "nuclear replication fork" evidence=ISS] [GO:0045899
"positive regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=ISO] [GO:0071276 "cellular
response to cadmium ion" evidence=IMP] [GO:0071585 "detoxification
of cadmium ion" evidence=IMP] InterPro:IPR000969 PRINTS:PR00887
PomBase:SPBC609.05 Pfam:PF03531 GO:GO:0005829 GO:GO:0034613
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
EMBL:CU329671 GO:GO:0071276 GO:GO:0071585 GO:GO:0006281
GO:GO:0006351 GenomeReviews:CU329671_GR GO:GO:0030466 GO:GO:0000790
GO:GO:0030702 GO:GO:0000070 GO:GO:0043596 GO:GO:0043486
GO:GO:0045899 GO:GO:0006334 GO:GO:0035101 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 OrthoDB:EOG437VP9 PIR:T40576
RefSeq:NP_596315.1 ProteinModelPortal:O94529 STRING:O94529
EnsemblFungi:SPBC609.05.1 GeneID:2541088 KEGG:spo:SPBC609.05
OMA:FQKDEET NextBio:20802201 Uniprot:O94529
Length = 512
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 160/455 (35%), Positives = 248/455 (54%)
Query: 20 PGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRD 79
PG+L+I + WK + + +I W + R +L + K GF
Sbjct: 19 PGKLRIAPSGLGWKSPSLAEPFTLPISEIRRFCWSRFARGYELKIILKSKDPVSLDGFSQ 78
Query: 80 QDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQT 139
+D+ L N + NF + E+K+ S+ G NWGE + G+ L F V + AFE+ ++ V+ T
Sbjct: 79 EDLDDLINVIKQNFDMGIEQKEFSIKGWNWGEANFLGSELVFDVNSRPAFEIPISAVTNT 138
Query: 140 QLQGKNDVILEFHVDDTTG--ANEKDSLMEISFHIPNSNTQ---FVGDE-NHPPAQVFRD 193
L GKN+V LEF D + + D L+E+ ++P + + G+E A +F +
Sbjct: 139 NLSGKNEVALEFSTTDDKQIPSAQVDELVEMRLYVPGTTAKEDAADGEEVEQNAANLFYE 198
Query: 194 KIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLF 253
+ AD+G +A+V+F I +LTPRGRY ++++ + +RL+G+ D+K++YSS+ LF
Sbjct: 199 SLKERADIGQAAGDAIVSFSEILLLTPRGRYDIDMYETCMRLRGKTYDYKVEYSSINSLF 258
Query: 254 LLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLE 313
LLPK ++ H V+ L+PP+R+GQT YP +V QF D ++ +L + E +L KY DK++
Sbjct: 259 LLPKPDEQHVVFVIGLEPPLRQGQTRYPFLVTQFVRDEDMEVDLNIEETVLKEKYADKVK 318
Query: 314 PSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLEKSFFFLP 373
SY EV + I RGL+G K+T P +F S + AVK S KA +G LY L+KSF F+P
Sbjct: 319 ASYDQPAFEVVSQIFRGLTGRKVTTPAEFLSHEGHAAVKCSYKANEGQLYCLDKSFLFIP 378
Query: 374 KPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISG 433
KP L+ +I V R S FDL L++ + F NI R E L F+
Sbjct: 379 KPTLLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGTSYQFSNINRVEQSALVAFLES 438
Query: 434 KGLKIMN-LGDMKTTDGVAAVLQEDDDDAVDPHLE 467
K +KI N L D +T + +D+D+ D +E
Sbjct: 439 KQIKIHNDLAD-ETQQTLLTSALDDEDEEGDEEME 472
>WB|WBGene00001973 [details] [associations]
symbol:hmg-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040011 GO:GO:0040018 GO:GO:0048477
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000910 GO:GO:0007413
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
EMBL:FO080198 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 PIR:T34025 RefSeq:NP_491688.1
ProteinModelPortal:O01683 SMR:O01683 IntAct:O01683 STRING:O01683
PaxDb:O01683 PRIDE:O01683 EnsemblMetazoa:C32F10.5 GeneID:172250
KEGG:cel:CELE_C32F10.5 UCSC:C32F10.5 CTD:172250 WormBase:C32F10.5
InParanoid:O01683 OMA:KRATTAY NextBio:874675 Uniprot:O01683
Length = 689
Score = 588 (212.0 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 137/464 (29%), Positives = 236/464 (50%)
Query: 7 FNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVRT 66
F + + G G L + I++ GGK+V + D+ + W K+ L V
Sbjct: 6 FKGVYVEDIGHLTCGTLTLTENSINFIGDKGGKSVYITGTDVDKLKWQKLGNKPGLRVGL 65
Query: 67 KDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQK 126
DG ++F GF D D+ + +F SN+ S + L ++G N+G+ D+ G + F +
Sbjct: 66 SDGGAHRFGGFLDDDLQKIQSFTSSNWSKSINQSNLFINGWNYGQADVKGKNIEFSWENE 125
Query: 127 QAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHP 186
FE+ +VS + KN+ ILEFH ++ + K LME+ FH+P +E+
Sbjct: 126 PIFEIPCTNVSNV-IANKNEAILEFHQNEQS----KVQLMEMRFHMP---VDLENEEDTD 177
Query: 187 PAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQY 246
+ F+ +++ A + A E+ + I TPRGRY ++++ + + L G+ D+KI
Sbjct: 178 KVEEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPV 237
Query: 247 SSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNT 306
++ RLFL+P + + V++L+PPIR+GQT Y +++ +F D EL +++E L+
Sbjct: 238 KTINRLFLVPHKDGRQVYFVLSLNPPIRQGQTHYSYLIFEFGKDEEEDLELSLTDEQLDY 297
Query: 307 KYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLE 366
+ L+ G I+E + + + + K+T PG+F + A++ + + G+LYP+E
Sbjct: 298 -FNGNLQREMTGPIYETISILFKSICNLKVTVPGRFLGSSGTPAIQCTHRQNLGLLYPME 356
Query: 367 KSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHN 426
K F F+ KP I EEI F R + G+ FD I LKT F + + E +
Sbjct: 357 KGFLFIQKPVMYIRFEEISSCHFAR-SDSGTVTRTFDFEIDLKTGSSLTFSAMDKEENNK 415
Query: 427 LFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPHLERIK 470
LFD+++ K +KI N D +A D+D +DP+ +K
Sbjct: 416 LFDYLNKKEIKIRN---SHRIDNKSAGYGSSDEDDIDPYKSTVK 456
Score = 134 (52.2 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN PKRA + +I + R ++K+ G DV + G +WK MS ++++ + KA D
Sbjct: 558 PNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQD 615
Query: 615 KKRYKDEISGYK 626
K RY+ E+ YK
Sbjct: 616 KARYEAEMKEYK 627
Score = 44 (20.5 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 605 EPYE-SKARADKKRYKDEISGYKNPKPMDIDSGNESDSA 642
E Y+ K +K KD G + + DSG+E D++
Sbjct: 473 EDYDLDKDMKKQKNDKDSSEGSGSEPDDEYDSGSEKDAS 511
Score = 43 (20.2 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 602 EEREPYESKARADKKRYKDEISGYKNPKPMDIDSG-----NESDSA 642
++ +PY+S +A+ + D+ + D+D N+ DS+
Sbjct: 446 DDIDPYKSTVKAEGREQDDDSDDESTDEDYDLDKDMKKQKNDKDSS 491
>CGD|CAL0005561 [details] [associations]
symbol:POB3 species:5476 "Candida albicans" [GO:0031298
"replication fork protection complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0035101 "FACT complex" evidence=IEA]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA]
[GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0030466 "chromatin silencing
at silent mating-type cassette" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0045899 "positive
regulation of RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0034724 "DNA replication-independent
nucleosome organization" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0030702 "chromatin silencing at
centromere" evidence=IEA] [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] InterPro:IPR000969 PRINTS:PR00887
CGD:CAL0005561 Pfam:PF03531 GO:GO:0005634 GO:GO:0005694
GO:GO:0071216 GO:GO:0036180 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006351 GO:GO:0009267 EMBL:AACQ01000008 EMBL:AACQ01000007
GO:GO:0036170 InterPro:IPR013719 Pfam:PF08512 RefSeq:XP_722461.1
RefSeq:XP_722602.1 ProteinModelPortal:Q5ALL8 SMR:Q5ALL8
STRING:Q5ALL8 GeneID:3635827 GeneID:3635964 KEGG:cal:CaO19.1560
KEGG:cal:CaO19.9133 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
Uniprot:Q5ALL8
Length = 538
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 166/477 (34%), Positives = 253/477 (53%)
Query: 7 FNNISLG-GRGGTNPGQLKIYSGKISWK-KLGGGKAVE---VDKVDIAGVTWMKVPRTNQ 61
F I L R G G+++I + WK G + + + +I +W + + +
Sbjct: 6 FEKIYLNQSRAG---GRMRIAESGLGWKASASSGSTSQPFLLPREEILIASWSRGSKGYE 62
Query: 62 LGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTF 121
L V+TK+ GF D L NF I+ E ++ S+ G NWG+ DL N L F
Sbjct: 63 LRVQTKNKGVVSLDGFDHDDFTQLKQELTRNFHINLEHREHSLRGWNWGKTDLARNELIF 122
Query: 122 MVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNS---NTQ 178
V K AFE+ +D+S + L GKN+V LEF++D+ +E ++E+ F++P + T
Sbjct: 123 NVNNKPAFEIPYSDISNSNLTGKNEVALEFNLDNNKNGDE---IVEMRFYVPGTIENETT 179
Query: 179 FVGDENH------------PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSV 226
V +E + AQ F +++ AD+G EA+V+F + LTPRGRY +
Sbjct: 180 IVKNETNGDVIEEAVVNETSAAQQFYEQLKDKADIGQVAGEAIVSFSDVLFLTPRGRYDI 239
Query: 227 ELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQ 286
+++ S LRL+G+ D+KIQY + R+F LPK ++ H +V+ +DPP+R+GQT YP +VLQ
Sbjct: 240 DMYPSSLRLRGKTYDYKIQYEQIERIFSLPKPDETHHLIVLQIDPPLRQGQTRYPFLVLQ 299
Query: 287 FETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQ 346
F D + EL +S+E KYKD+L+ +Y + V + LRGL+ K+ PG F+S
Sbjct: 300 FVKDEETELELNVSDEDFEKKYKDRLKKTYDAPTNVVMSHCLRGLTERKLITPGAFQSRY 359
Query: 347 DGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLI 406
V S+KA +G L+PL++ F F+ KP I + EI V R G S FDL +
Sbjct: 360 LQAGVPCSVKASEGYLFPLDRCFLFVTKPTLYIPYSEISSVVMSRTGGGVSASRTFDLEV 419
Query: 407 R-LKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQE--DDDD 460
+ + Q H+F NI R E + F KG+K+ N + A+ QE DDDD
Sbjct: 420 NVIGSNQPHVFSNIDREEQEFIESFCKEKGVKVKNEEKIAKARLAKALEQEANDDDD 476
>UNIPROTKB|Q5ALL8 [details] [associations]
symbol:POB3 "FACT complex subunit POB3" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000969 PRINTS:PR00887 CGD:CAL0005561 Pfam:PF03531
GO:GO:0005634 GO:GO:0005694 GO:GO:0071216 GO:GO:0036180
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0009267
EMBL:AACQ01000008 EMBL:AACQ01000007 GO:GO:0036170
InterPro:IPR013719 Pfam:PF08512 RefSeq:XP_722461.1
RefSeq:XP_722602.1 ProteinModelPortal:Q5ALL8 SMR:Q5ALL8
STRING:Q5ALL8 GeneID:3635827 GeneID:3635964 KEGG:cal:CaO19.1560
KEGG:cal:CaO19.9133 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
Uniprot:Q5ALL8
Length = 538
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 166/477 (34%), Positives = 253/477 (53%)
Query: 7 FNNISLG-GRGGTNPGQLKIYSGKISWK-KLGGGKAVE---VDKVDIAGVTWMKVPRTNQ 61
F I L R G G+++I + WK G + + + +I +W + + +
Sbjct: 6 FEKIYLNQSRAG---GRMRIAESGLGWKASASSGSTSQPFLLPREEILIASWSRGSKGYE 62
Query: 62 LGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTF 121
L V+TK+ GF D L NF I+ E ++ S+ G NWG+ DL N L F
Sbjct: 63 LRVQTKNKGVVSLDGFDHDDFTQLKQELTRNFHINLEHREHSLRGWNWGKTDLARNELIF 122
Query: 122 MVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNS---NTQ 178
V K AFE+ +D+S + L GKN+V LEF++D+ +E ++E+ F++P + T
Sbjct: 123 NVNNKPAFEIPYSDISNSNLTGKNEVALEFNLDNNKNGDE---IVEMRFYVPGTIENETT 179
Query: 179 FVGDENH------------PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSV 226
V +E + AQ F +++ AD+G EA+V+F + LTPRGRY +
Sbjct: 180 IVKNETNGDVIEEAVVNETSAAQQFYEQLKDKADIGQVAGEAIVSFSDVLFLTPRGRYDI 239
Query: 227 ELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQ 286
+++ S LRL+G+ D+KIQY + R+F LPK ++ H +V+ +DPP+R+GQT YP +VLQ
Sbjct: 240 DMYPSSLRLRGKTYDYKIQYEQIERIFSLPKPDETHHLIVLQIDPPLRQGQTRYPFLVLQ 299
Query: 287 FETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQ 346
F D + EL +S+E KYKD+L+ +Y + V + LRGL+ K+ PG F+S
Sbjct: 300 FVKDEETELELNVSDEDFEKKYKDRLKKTYDAPTNVVMSHCLRGLTERKLITPGAFQSRY 359
Query: 347 DGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLI 406
V S+KA +G L+PL++ F F+ KP I + EI V R G S FDL +
Sbjct: 360 LQAGVPCSVKASEGYLFPLDRCFLFVTKPTLYIPYSEISSVVMSRTGGGVSASRTFDLEV 419
Query: 407 R-LKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQE--DDDD 460
+ + Q H+F NI R E + F KG+K+ N + A+ QE DDDD
Sbjct: 420 NVIGSNQPHVFSNIDREEQEFIESFCKEKGVKVKNEEKIAKARLAKALEQEANDDDD 476
>SGD|S000004534 [details] [associations]
symbol:POB3 "Subunit of the heterodimeric FACT complex
(Spt16p-Pob3p)" species:4932 "Saccharomyces cerevisiae" [GO:0031298
"replication fork protection complex" evidence=IDA] [GO:0031491
"nucleosome binding" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0035101 "FACT
complex" evidence=IGI;IDA;IPI] [GO:0034401 "regulation of
transcription by chromatin organization" evidence=IC] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0034724 "DNA
replication-independent nucleosome organization" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IGI;IMP;IPI]
[GO:0000790 "nuclear chromatin" evidence=IDA] InterPro:IPR000969
PRINTS:PR00887 SGD:S000004534 Pfam:PF03531 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006281 GO:GO:0006261
EMBL:BK006946 GO:GO:0000790 GO:GO:0034401 GO:GO:0045899
GO:GO:0031298 EMBL:Z38114 GeneTree:ENSGT00700000104547
GO:GO:0035101 InterPro:IPR013719 Pfam:PF08512 GO:GO:0034724
eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
OrthoDB:EOG437VP9 OMA:FQKDEET PIR:S48328 RefSeq:NP_013642.1
PDB:2GCJ PDB:2GCL PDB:3F5R PDBsum:2GCJ PDBsum:2GCL PDBsum:3F5R
ProteinModelPortal:Q04636 SMR:Q04636 DIP:DIP-4083N IntAct:Q04636
MINT:MINT-559116 STRING:Q04636 PaxDb:Q04636 PeptideAtlas:Q04636
EnsemblFungi:YML069W GeneID:854933 KEGG:sce:YML069W CYGD:YML069w
EvolutionaryTrace:Q04636 NextBio:977968 Genevestigator:Q04636
GermOnline:YML069W Uniprot:Q04636
Length = 552
Score = 475 (172.3 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 92/279 (32%), Positives = 159/279 (56%)
Query: 183 ENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDF 242
E A+ F +++ AD+G +A+V+F+ + TPRGRY ++++ + +RL+G+ ++
Sbjct: 216 EEKSMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEY 275
Query: 243 KIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEE 302
K+Q+ + R+ LPK++ H +V+ ++PP+R+GQT YP +VLQF+ D + +L + +E
Sbjct: 276 KLQHRQIQRIVSLPKADDIHHLLVLAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDE 335
Query: 303 LLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVL 362
YKDKL+ Y H V + +L+GL+ ++ PG+++S D AV S KA +G L
Sbjct: 336 DYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYL 395
Query: 363 YPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQR 421
YPL+ +FFFL KP I ++ V R ++ FDL + L++ + F NI +
Sbjct: 396 YPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISK 455
Query: 422 NEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDD 460
E L F+ K L++ N D + + + L D D+
Sbjct: 456 EEQQLLEQFLKSKNLRVKN-EDREVQERLQTALGSDSDE 493
Score = 227 (85.0 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 57/201 (28%), Positives = 94/201 (46%)
Query: 21 GQLKIYSGKISWK-KLGGGKAVE-------VDKVDIAGVTWMKVPRTNQLGVRTKDGLYY 72
G+ +I + WK GG A + +++ V W + R L + TK+
Sbjct: 17 GRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVI 76
Query: 73 KFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVS 132
+ GF D + N F F I E+++ S+ G NWG+ DL N + F + K FE+
Sbjct: 77 QLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIP 136
Query: 133 LADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFR 192
A ++ T L KN+V +EF++ D D L+E+ F+IP V DEN +
Sbjct: 137 YARINNTNLTSKNEVGIEFNIQDEEYQPAGDELVEMRFYIPGVIQTNV-DENMTKKEESS 195
Query: 193 DKIMSMADVGAGGEEAVVTFE 213
++++ + GA GE+ + E
Sbjct: 196 NEVVPKKEDGAEGEDVQMAVE 216
>UNIPROTKB|J9NYX4 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 EMBL:AAEX03011448
Ensembl:ENSCAFT00000049552 Uniprot:J9NYX4
Length = 551
Score = 525 (189.9 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 110/305 (36%), Positives = 173/305 (56%)
Query: 166 MEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYS 225
ME+ F++P TQ ++ P + F ++S ADV +A+ F + LTPRGRY
Sbjct: 1 MEVRFYVPP--TQ---EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYD 55
Query: 226 VELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVL 285
+ ++ +FL L G+ D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT Y ++L
Sbjct: 56 IRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLIL 115
Query: 286 QFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSA 345
F D + L M+EE + +++ +L + G ++E+ + +++ L KIT PG F+
Sbjct: 116 LFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGH 175
Query: 346 QDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLL 405
+ S KA G+LYPLE+ F ++ KPP I +EI +V F R G + FD
Sbjct: 176 SGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFE 232
Query: 406 IRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVLQEDDDDAVDPH 465
I K ++ F +I+R EY LFDF++ K L I N G + + + D+D D +
Sbjct: 233 IETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAY 292
Query: 466 LERIK 470
LER+K
Sbjct: 293 LERMK 297
Score = 158 (60.7 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR MS ++ + RE IK +PGI+ TD+ + GE WK MS E++E ++ KA
Sbjct: 386 PNAPKRPMSAYMLWLNASREKIKADHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA 445
Query: 615 KKRYKDEISGYK 626
++ Y+ + Y+
Sbjct: 446 RREYEKAMKEYE 457
Score = 42 (19.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 42 EVDKVDIA-GVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNF 88
E+ V+ A G T R+ + TK G Y F+ ++ L +F
Sbjct: 213 EISFVNFARGTT---TTRSFDFEIETKQGTQYTFSSIEREEYGKLFDF 257
>GENEDB_PFALCIPARUM|PF14_0393 [details] [associations]
symbol:PF14_0393 "structure specific
recognition protein, putative" species:5833 "Plasmodium falciparum"
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000969 PRINTS:PR00887
Pfam:PF03531 GO:GO:0005634 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003697 EMBL:AE014187 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 OMA:FQKDEET ProtClustDB:CLSZ2434425
RefSeq:XP_001348567.1 ProteinModelPortal:Q8IL56 IntAct:Q8IL56
MINT:MINT-1564957 PRIDE:Q8IL56 EnsemblProtists:PF14_0393:mRNA
GeneID:811975 KEGG:pfa:PF14_0393 EuPathDB:PlasmoDB:PF3D7_1441400
HOGENOM:HOG000282144 Uniprot:Q8IL56
Length = 506
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 136/456 (29%), Positives = 241/456 (52%)
Query: 11 SLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVP-RTNQLGVR---T 66
++ G GG++ G ++ + + WK + DI W+K N+L ++ +
Sbjct: 18 NIRGFGGSDFGSFRMSNEFLGWKNKKTNNVYQYKCSDIDEGCWIKTSYNNNRLHLKLGES 77
Query: 67 KDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQK 126
K+ + F GF D++V +T FQ F I ++++ G NWGE L + L F + K
Sbjct: 78 KENIIIYFDGFPDRNVNEITQHFQKYFNIRLNNRKIATKGWNWGEFKLENSNLCFDIDNK 137
Query: 127 QAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHP 186
AF + +++Q +Q K D+ +EF D+ +D L EI F+ P+ N DEN
Sbjct: 138 YAFNLPTNNINQLNVQIKTDIAMEFKNDENNNKGNEDFLAEIRFYYPHEN-----DENQN 192
Query: 187 PAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQY 246
Q ++ ++ ++G E++ + I +L PRGRY +E++ S +L G++ DF IQY
Sbjct: 193 -FQNLKNDLLEKVNIGDTKSESIASLSNIPLLVPRGRYDIEMYSSTFKLHGKSYDFNIQY 251
Query: 247 SSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNT 306
+++ ++ L+PKSN ++ +L +++GQT YP I++Q D ++ ++ S+E++ T
Sbjct: 252 TNINKMILVPKSNSNQYVLIFSLSNKMKQGQTEYPFILIQLNNDDDMELDISASDEVM-T 310
Query: 307 KYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLE 366
KYK LE + G H+V T + L + PG +R++++ + + S +A G LYPL
Sbjct: 311 KYK--LEKTISGKAHDVVTKLFTALVNKNVIVPGDYRTSKNQHGITCSYRAASGQLYPLN 368
Query: 367 KSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMH-YFDLLIRLKTEQEHLFRNIQRNEYH 425
K F F+ KP LI ++I + F+R G N H +F L+I+ K + + NI ++EY+
Sbjct: 369 KYFLFIVKPVILISFDDIVTLSFQR--TGNINQHRFFSLIIKHKRGMSYEYTNIDKSEYN 426
Query: 426 NLFDFISGKGLKIMN-LGDMKTTDGVAAVLQEDDDD 460
L F+ K + I + D++ L E D++
Sbjct: 427 PLLTFLKSKNINIQDDANDLEKKQDFHNELDESDEE 462
>UNIPROTKB|Q8IL56 [details] [associations]
symbol:PF14_0393 "Structure specific recognition protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000969 PRINTS:PR00887
Pfam:PF03531 GO:GO:0005634 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003697 EMBL:AE014187 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 OMA:FQKDEET ProtClustDB:CLSZ2434425
RefSeq:XP_001348567.1 ProteinModelPortal:Q8IL56 IntAct:Q8IL56
MINT:MINT-1564957 PRIDE:Q8IL56 EnsemblProtists:PF14_0393:mRNA
GeneID:811975 KEGG:pfa:PF14_0393 EuPathDB:PlasmoDB:PF3D7_1441400
HOGENOM:HOG000282144 Uniprot:Q8IL56
Length = 506
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 136/456 (29%), Positives = 241/456 (52%)
Query: 11 SLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVP-RTNQLGVR---T 66
++ G GG++ G ++ + + WK + DI W+K N+L ++ +
Sbjct: 18 NIRGFGGSDFGSFRMSNEFLGWKNKKTNNVYQYKCSDIDEGCWIKTSYNNNRLHLKLGES 77
Query: 67 KDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQK 126
K+ + F GF D++V +T FQ F I ++++ G NWGE L + L F + K
Sbjct: 78 KENIIIYFDGFPDRNVNEITQHFQKYFNIRLNNRKIATKGWNWGEFKLENSNLCFDIDNK 137
Query: 127 QAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENHP 186
AF + +++Q +Q K D+ +EF D+ +D L EI F+ P+ N DEN
Sbjct: 138 YAFNLPTNNINQLNVQIKTDIAMEFKNDENNNKGNEDFLAEIRFYYPHEN-----DENQN 192
Query: 187 PAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQY 246
Q ++ ++ ++G E++ + I +L PRGRY +E++ S +L G++ DF IQY
Sbjct: 193 -FQNLKNDLLEKVNIGDTKSESIASLSNIPLLVPRGRYDIEMYSSTFKLHGKSYDFNIQY 251
Query: 247 SSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNT 306
+++ ++ L+PKSN ++ +L +++GQT YP I++Q D ++ ++ S+E++ T
Sbjct: 252 TNINKMILVPKSNSNQYVLIFSLSNKMKQGQTEYPFILIQLNNDDDMELDISASDEVM-T 310
Query: 307 KYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYAVKSSLKAEDGVLYPLE 366
KYK LE + G H+V T + L + PG +R++++ + + S +A G LYPL
Sbjct: 311 KYK--LEKTISGKAHDVVTKLFTALVNKNVIVPGDYRTSKNQHGITCSYRAASGQLYPLN 368
Query: 367 KSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMH-YFDLLIRLKTEQEHLFRNIQRNEYH 425
K F F+ KP LI ++I + F+R G N H +F L+I+ K + + NI ++EY+
Sbjct: 369 KYFLFIVKPVILISFDDIVTLSFQR--TGNINQHRFFSLIIKHKRGMSYEYTNIDKSEYN 426
Query: 426 NLFDFISGKGLKIMN-LGDMKTTDGVAAVLQEDDDD 460
L F+ K + I + D++ L E D++
Sbjct: 427 PLLTFLKSKNINIQDDANDLEKKQDFHNELDESDEE 462
>ASPGD|ASPL0000002272 [details] [associations]
symbol:AN6687 species:162425 "Emericella nidulans"
[GO:0000070 "mitotic sister chromatid segregation" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0071585 "detoxification of cadmium ion"
evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:0071276 "cellular response to cadmium ion"
evidence=IEA] [GO:0030702 "chromatin silencing at centromere"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0035101 "FACT
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF03531 GO:GO:0005634
GO:GO:0005694 GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
EMBL:BN001301 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
KO:K09272 InterPro:IPR024954 EMBL:AACD01000111 RefSeq:XP_664291.1
STRING:Q5AYE3 GeneID:2870474 KEGG:ani:AN6687.2 HOGENOM:HOG000180790
OMA:PVEVKKG OrthoDB:EOG437VP9 Uniprot:Q5AYE3
Length = 575
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 133/364 (36%), Positives = 201/364 (55%)
Query: 98 EEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVI-LEFHVDDT 156
E +++G+N EV + ++ G K A S + + G ++++ + F++ T
Sbjct: 130 EISNTNLAGKN--EVAVELSLSVDPNGSKPAG--STKNRGRKAAAGPDELVEMRFYIPGT 185
Query: 157 TGANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIA 216
E E + + G+E + A +F + +M A++G + TF +
Sbjct: 186 AVKTENGIKGENADEKNGGEGEENGEEQNA-ANLFYELLMEKAEIGDVAGDTFATFLDVL 244
Query: 217 ILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKG 276
LTPRGR+ ++++ S RL+G+ D+KIQYSS+ + FLLPK++ HT +V+ L+PP+R+G
Sbjct: 245 HLTPRGRFDIDMYESSFRLRGKTYDYKIQYSSIKKFFLLPKNDDTHTLIVLGLEPPLRQG 304
Query: 277 QTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKI 336
QT YP +V+Q + D + EL M+EELL T+YKDKLEP Y+ IH+V T I RGLSG K+
Sbjct: 305 QTRYPFLVMQLKLDEEISLELNMTEELLETRYKDKLEPRYEEPIHQVITKIFRGLSGKKV 364
Query: 337 TKPGKFRSAQDGYA-VKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAG 395
P K + G++ VK S+KA +G+LY L+KS F+PKP T I E + V R
Sbjct: 365 IMPSKDFVSHHGHSGVKCSIKANEGLLYFLDKSLIFVPKPATYIQMENVAVVTMSRVGGA 424
Query: 396 GSNMHYFDLLIRLKTEQ-EHLFRNIQRNEYHNLFDFISGKGLKIMNLGDMKTTDGVAAVL 454
S FD+ + LK EH F NI R E L +F K ++I N T +AA L
Sbjct: 425 ISASRTFDITVSLKAGMGEHQFSNINREEQQPLEEFFKAKNIRIKNEMSDDTNALIAAAL 484
Query: 455 QEDD 458
DD
Sbjct: 485 DNDD 488
Score = 207 (77.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 46/160 (28%), Positives = 79/160 (49%)
Query: 6 SFNNISLGGRGGTNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVPRTNQLGVR 65
SF+NI L PG+ K+ + W+ GGG +D +I W + + +L +
Sbjct: 3 SFDNIYLDL--SNQPGKCKLAETGLGWRPSGGGDTFTLDSSNIGAAQWSRAAKGYELKIL 60
Query: 66 TKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQ 125
++ + GF +D L+ F+ +GI+ E ++ ++ G NWG+ + L F V
Sbjct: 61 SRSSGVIQLDGFDQEDFERLSKAFKIWYGINVESREHALRGWNWGKAEFTKAELAFNVQN 120
Query: 126 KQAFEVSLADVSQTQLQGKNDVILEFHVD-DTTGANEKDS 164
+ AFEV +++S T L GKN+V +E + D G+ S
Sbjct: 121 RPAFEVPYSEISNTNLAGKNEVAVELSLSVDPNGSKPAGS 160
Score = 47 (21.6 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 592 LGE-RWKKMSVEEREPYESKARADKKRYKDEISGYKN 627
+GE ++ ++ EE++P E +A R K+E+S N
Sbjct: 441 MGEHQFSNINREEQQPLEEFFKAKNIRIKNEMSDDTN 477
>UNIPROTKB|E9PMD4 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF03531 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 EMBL:AP000781 InterPro:IPR024954
HGNC:HGNC:11327 ChiTaRS:SSRP1 IPI:IPI00985291
ProteinModelPortal:E9PMD4 SMR:E9PMD4 PRIDE:E9PMD4
Ensembl:ENST00000526696 ArrayExpress:E9PMD4 Bgee:E9PMD4
Uniprot:E9PMD4
Length = 192
Score = 389 (142.0 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 83/201 (41%), Positives = 122/201 (60%)
Query: 99 EKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTG 158
EK L V G NWG V G +L+F +G + FE+ L++VSQ GKN+V LEFH +D
Sbjct: 2 EKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND--- 57
Query: 159 ANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAIL 218
+ + SLME+ F++P TQ ++ P + F ++S ADV +A+ F + L
Sbjct: 58 -DAEVSLMEVRFYVPP--TQ---EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCL 111
Query: 219 TPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQT 278
TPRGRY + ++ +FL L G+ D+KI Y++V+RLFLLP +Q F V++LDPPI++GQT
Sbjct: 112 TPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQT 171
Query: 279 LYPHIVLQFETDYVVQSELLM 299
Y ++L F D + L M
Sbjct: 172 RYHFLILLFSKDEDISLTLNM 192
>UNIPROTKB|E9PPZ7 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR000969 PRINTS:PR00887 Pfam:PF03531
GO:GO:0005634 GO:GO:0003677 EMBL:AP000781 InterPro:IPR024954
HGNC:HGNC:11327 ChiTaRS:SSRP1 IPI:IPI00981139
ProteinModelPortal:E9PPZ7 SMR:E9PPZ7 PRIDE:E9PPZ7
Ensembl:ENST00000529002 UCSC:uc010rjq.1 ArrayExpress:E9PPZ7
Bgee:E9PPZ7 Uniprot:E9PPZ7
Length = 154
Score = 311 (114.5 bits), Expect = 3.6e-27, P = 3.6e-27
Identities = 67/162 (41%), Positives = 99/162 (61%)
Query: 99 EKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTG 158
EK L V G NWG V G +L+F +G + FE+ L++VSQ GKN+V LEFH +D
Sbjct: 2 EKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTT-GKNEVTLEFHQND--- 57
Query: 159 ANEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAIL 218
+ + SLME+ F++P TQ ++ P + F ++S ADV +A+ F + L
Sbjct: 58 -DAEVSLMEVRFYVPP--TQ---EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCL 111
Query: 219 TPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQ 260
TPRGRY + ++ +FL L G+ D+KI Y++V+RLFLLP +Q
Sbjct: 112 TPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQ 153
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 237 (88.5 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR +S ++FF+ R+ +++ NPGI+F VG++LGE+WK +S +ER+PYE KA AD
Sbjct: 24 PNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYEDKAAAD 83
Query: 615 KKRYKDEISGYK 626
KKRY+DE + YK
Sbjct: 84 KKRYEDEKAAYK 95
>UNIPROTKB|G4MS97 [details] [associations]
symbol:MGG_04489 "Non-histone chromosomal protein 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
KEGG:mgr:MGG_04489 Uniprot:G4MS97
Length = 101
Score = 229 (85.7 bits), Expect = 3.1e-18, P = 3.1e-18
Identities = 37/72 (51%), Positives = 57/72 (79%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P APKR +S ++FF+ +R+N+++ NPG+ F VG++LGERWK +S ++R PY++KA AD
Sbjct: 21 PMAPKRGLSAYMFFANEQRDNVREENPGVTFGQVGKILGERWKALSDKQRAPYDAKAAAD 80
Query: 615 KKRYKDEISGYK 626
KKRY+DE + Y+
Sbjct: 81 KKRYEDEKAAYQ 92
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 224 (83.9 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 37/67 (55%), Positives = 52/67 (77%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR +S ++FF+ R+ ++ NP + F VGR+LGERWK ++ EE++PYESKA+AD
Sbjct: 24 PNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQPYESKAQAD 83
Query: 615 KKRYKDE 621
KKRY+ E
Sbjct: 84 KKRYESE 90
>SGD|S000006256 [details] [associations]
symbol:NHP6A "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
III transcriptional preinitiation complex assembly"
evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
Length = 93
Score = 213 (80.0 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 36/67 (53%), Positives = 52/67 (77%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKRA+S ++FF+ R+ ++ NP I F VG+ LGE+WK ++ EE++PYE+KA+AD
Sbjct: 18 PNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQAD 77
Query: 615 KKRYKDE 621
KKRY+ E
Sbjct: 78 KKRYESE 84
>CGD|CAF0007020 [details] [associations]
symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 208 (78.3 bits), Expect = 5.8e-16, P = 5.8e-16
Identities = 35/71 (49%), Positives = 55/71 (77%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P+APKR++S ++FF+ R+ ++ NPGI+F VG++LGE+WK ++ E++ PYE+KA AD
Sbjct: 16 PDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEAD 75
Query: 615 KKRYKDEISGY 625
KKRY+ E + Y
Sbjct: 76 KKRYEKEKAEY 86
>UNIPROTKB|Q9UVL1 [details] [associations]
symbol:NHP6 "Non-histone chromosomal protein 6"
species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 208 (78.3 bits), Expect = 5.8e-16, P = 5.8e-16
Identities = 35/71 (49%), Positives = 55/71 (77%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P+APKR++S ++FF+ R+ ++ NPGI+F VG++LGE+WK ++ E++ PYE+KA AD
Sbjct: 16 PDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEAD 75
Query: 615 KKRYKDEISGY 625
KKRY+ E + Y
Sbjct: 76 KKRYEKEKAEY 86
>POMBASE|SPAC57A10.09c [details] [associations]
symbol:nhp6 "High-mobility group non-histone chromatin
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
ProteinModelPortal:P87057 STRING:P87057
EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
NextBio:20803918 Uniprot:P87057
Length = 108
Score = 202 (76.2 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 38/71 (53%), Positives = 48/71 (67%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN PKR MS F+FFS RE +K NP F +G +LG+RWK+++ EREPYE KAR D
Sbjct: 13 PNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQD 72
Query: 615 KKRYKDEISGY 625
K+RY+ E Y
Sbjct: 73 KERYERERKEY 83
>UNIPROTKB|J9NVS3 [details] [associations]
symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
Uniprot:J9NVS3
Length = 219
Score = 183 (69.5 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR SGF F R IK +NPGI+ DV + LGE W +S E++PY +KA
Sbjct: 108 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKL 167
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +++ YK+ D
Sbjct: 168 KEKYEKDVADYKSKGKFD 185
Score = 143 (55.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ ++ A+
Sbjct: 24 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAK 83
Query: 613 ADKKRYKDEISGY 625
ADK RY E+ Y
Sbjct: 84 ADKVRYDREMKDY 96
>UNIPROTKB|P36194 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
STRING:P36194 PRIDE:P36194 Uniprot:P36194
Length = 201
Score = 183 (69.5 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 36/88 (40%), Positives = 52/88 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR SGF F R IK +NPGI+ DV + LGE W +S E++PY +KA
Sbjct: 89 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKL 148
Query: 615 KKRYKDEISGYKNPKPMDIDSGNESDSA 642
K++Y+ +++ YK+ D G + +A
Sbjct: 149 KEKYEKDVADYKSKGKFDGAKGAATKAA 176
Score = 134 (52.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ ++ A+
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKK-NPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAK 64
Query: 613 ADKKRYKDEISGY 625
ADK RY E+ Y
Sbjct: 65 ADKVRYDREMKDY 77
>MGI|MGI:1098219 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0045578 "negative regulation of B cell differentiation"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
CleanEx:MM_HMGB3 Genevestigator:O54879
GermOnline:ENSMUSG00000015217 Uniprot:O54879
Length = 200
Score = 181 (68.8 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR SGF F R IK +NPGI+ DV + LGE W +S E++PY +KA
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKL 149
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +++ YK+ D
Sbjct: 150 KEKYEKDVADYKSKGKFD 167
Score = 144 (55.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ ++ A+
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAK 65
Query: 613 ADKKRYKDEISGY 625
ADK RY E+ Y
Sbjct: 66 ADKVRYDREMKDY 78
>RGD|1564407 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
cell differentiation" evidence=ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
Genevestigator:B0BN99 Uniprot:B0BN99
Length = 200
Score = 181 (68.8 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR SGF F R IK +NPGI+ DV + LGE W +S E++PY +KA
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYMTKAAKL 149
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +++ YK+ D
Sbjct: 150 KEKYEKDVADYKSKGKFD 167
Score = 144 (55.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ ++ A+
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAK 65
Query: 613 ADKKRYKDEISGY 625
ADK RY E+ Y
Sbjct: 66 ADKVRYDREMKDY 78
>UNIPROTKB|Q32L31 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9913
"Bos taurus" [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
ArrayExpress:Q32L31 Uniprot:Q32L31
Length = 200
Score = 180 (68.4 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR SGF F R IK +NPGI+ DV + LGE W +S E++PY +KA
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKL 149
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +++ YK+ D
Sbjct: 150 KEKYEKDVADYKSKGKFD 167
Score = 143 (55.4 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ ++ A+
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAK 65
Query: 613 ADKKRYKDEISGY 625
ADK RY E+ Y
Sbjct: 66 ADKVRYDREMKDY 78
>UNIPROTKB|F1RQ19 [details] [associations]
symbol:LOC100517745 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
Uniprot:F1RQ19
Length = 202
Score = 180 (68.4 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR SGF F R IK +NPGI+ DV + LGE W +S E++PY +KA
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKL 149
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +++ YK+ D
Sbjct: 150 KEKYEKDVADYKSKGKFD 167
Score = 143 (55.4 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ ++ A+
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAK 65
Query: 613 ADKKRYKDEISGY 625
ADK RY E+ Y
Sbjct: 66 ADKVRYDREMKDY 78
>UNIPROTKB|E1BIU3 [details] [associations]
symbol:LOC532409 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
Uniprot:E1BIU3
Length = 186
Score = 180 (68.4 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR SGF F R IK +NPGI+ DV + LGE W +S E++PY +KA
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKL 149
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +++ YK+ D
Sbjct: 150 KEKYEKDVADYKSKGKFD 167
Score = 140 (54.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ ++ A+
Sbjct: 6 PKKPKGKMSAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIAK 65
Query: 613 ADKKRYKDEISGY 625
ADK RY E+ Y
Sbjct: 66 ADKVRYDREMKDY 78
>ZFIN|ZDB-GENE-030131-341 [details] [associations]
symbol:hmgb1a "high-mobility group box 1a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
Length = 205
Score = 178 (67.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R +K+ PG++ DV + LGE W K+S EE++PYE KA
Sbjct: 91 PNAPKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAKL 150
Query: 615 KKRYKDEISGYKN 627
K++Y+ +I+ Y++
Sbjct: 151 KEKYEKDIAAYRS 163
Score = 142 (55.0 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPG--IAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + +F Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 5 PTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
Query: 613 ADKKRYKDEISGYKNPK 629
DK RY+ E+ Y PK
Sbjct: 65 LDKARYEREMKNYIPPK 81
>UNIPROTKB|P40618 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
Length = 202
Score = 177 (67.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 35/88 (39%), Positives = 51/88 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +NPGI+ DV + LGE W +S E++PY +KA
Sbjct: 90 PNAPKRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKL 149
Query: 615 KKRYKDEISGYKNPKPMDIDSGNESDSA 642
K++Y+ +++ YK+ D G + +A
Sbjct: 150 KEKYEKDVADYKSKGKFDGAKGAATKAA 177
Score = 143 (55.4 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ ++ A+
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAK 65
Query: 613 ADKKRYKDEISGY 625
ADK RY E+ Y
Sbjct: 66 ADKVRYDREMKDY 78
>UNIPROTKB|E7EQU1 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
Uniprot:E7EQU1
Length = 193
Score = 177 (67.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR SGF F R IK +NPGI+ DV + LGE W ++ E++PY +KA
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL 149
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +++ YK+ D
Sbjct: 150 KEKYEKDVADYKSKGKFD 167
Score = 143 (55.4 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ ++ A+
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAK 65
Query: 613 ADKKRYKDEISGY 625
ADK RY E+ Y
Sbjct: 66 ADKVRYDREMKDY 78
>UNIPROTKB|E7ES08 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
Uniprot:E7ES08
Length = 188
Score = 177 (67.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR SGF F R IK +NPGI+ DV + LGE W ++ E++PY +KA
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL 149
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +++ YK+ D
Sbjct: 150 KEKYEKDVADYKSKGKFD 167
Score = 143 (55.4 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ ++ A+
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAK 65
Query: 613 ADKKRYKDEISGY 625
ADK RY E+ Y
Sbjct: 66 ADKVRYDREMKDY 78
>UNIPROTKB|O15347 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0003690 "double-stranded DNA binding"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
Length = 200
Score = 177 (67.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR SGF F R IK +NPGI+ DV + LGE W ++ E++PY +KA
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL 149
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +++ YK+ D
Sbjct: 150 KEKYEKDVADYKSKGKFD 167
Score = 143 (55.4 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ ++ A+
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAK 65
Query: 613 ADKKRYKDEISGY 625
ADK RY E+ Y
Sbjct: 66 ADKVRYDREMKDY 78
>DICTYBASE|DDB_G0270260 [details] [associations]
symbol:nhp6 "HMG1/2 (high mobility group)
box-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006325 "chromatin organization"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000790 "nuclear chromatin" evidence=ISS] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR009071 dictyBase:DDB_G0270260 Pfam:PF00505
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0006351 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000790 GO:GO:0006325 HSSP:P63159
RefSeq:XP_646657.1 ProteinModelPortal:Q55C24 STRING:Q55C24
EnsemblProtists:DDB0216420 GeneID:8617629 KEGG:ddi:DDB_G0270260
OMA:ERVKNAN Uniprot:Q55C24
Length = 141
Score = 177 (67.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 35/87 (40%), Positives = 53/87 (60%)
Query: 556 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
NAP+R +S FIFFS+ R IK S+P +F ++G +LG+ W K+S E+++ YE A DK
Sbjct: 51 NAPRRYLSPFIFFSKDHRSVIKNSHPNCSFGEIGSLLGQEWAKISAEDKKKYEKLAAEDK 110
Query: 616 KRYKDEISGYKNPKPMDIDSGNESDSA 642
KR++ E Y + + SDS+
Sbjct: 111 KRWELEKKNYDEKLKTQSQAESSSDSS 137
>UNIPROTKB|F1NPU8 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0032075 "positive regulation of
nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0045654 "positive regulation of
megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
Uniprot:F1NPU8
Length = 207
Score = 169 (64.5 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ D + LGE W + S ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +I+ Y+ D
Sbjct: 152 KEKYEKDIAAYRAKSKSD 169
Score = 150 (57.9 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 31/77 (40%), Positives = 42/77 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
PN P+ MS + +F Q RE KK +P + F + R ERWK MS +E+ +E A+
Sbjct: 6 PNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
DK RY E+ Y PK
Sbjct: 66 GDKARYDREMKNYVPPK 82
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 169 (64.5 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W +V++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAVDDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 140 (54.3 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE K +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
DK RY+ E+ Y PK
Sbjct: 66 VDKARYEREMKTYIPPK 82
>UNIPROTKB|P40673 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9913
"Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
[GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
"histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
[GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
receptor binding" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
differentiation" evidence=IEA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043234 "protein complex" evidence=IEA] [GO:0042056
"chemoattractant activity" evidence=IEA] [GO:0032075 "positive
regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
Length = 209
Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ D + LGE W + S ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 615 KKRYKDEISGYK 626
K++Y+ +I+ Y+
Sbjct: 152 KEKYEKDIAAYR 163
Score = 155 (59.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
PN P+ MS + FF Q RE KK +P + F + + ERWK MS +E+ +E A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
+DK RY E+ Y PK
Sbjct: 66 SDKARYDREMKNYVPPK 82
>UNIPROTKB|E2QY30 [details] [associations]
symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045654 "positive regulation of megakaryocyte differentiation"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
evidence=IEA] [GO:0032075 "positive regulation of nuclease
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
Length = 210
Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ D + LGE W + S ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 615 KKRYKDEISGYK 626
K++Y+ +I+ Y+
Sbjct: 152 KEKYEKDIAAYR 163
Score = 155 (59.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
PN P+ MS + FF Q RE KK +P + F + + ERWK MS +E+ +E A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
+DK RY E+ Y PK
Sbjct: 66 SDKARYDREMKNYVPPK 82
>UNIPROTKB|P26583 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
"nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
"positive regulation of endothelial cell proliferation"
evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
[GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IMP] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
recombination" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=IDA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
"apoptotic process" evidence=TAS] [GO:0006921 "cellular component
disassembly involved in execution phase of apoptosis" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
Length = 209
Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ D + LGE W + S ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 615 KKRYKDEISGYK 626
K++Y+ +I+ Y+
Sbjct: 152 KEKYEKDIAAYR 163
Score = 155 (59.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
PN P+ MS + FF Q RE KK +P + F + + ERWK MS +E+ +E A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
+DK RY E+ Y PK
Sbjct: 66 SDKARYDREMKNYVPPK 82
>UNIPROTKB|P17741 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
Uniprot:P17741
Length = 210
Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ D + LGE W + S ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 615 KKRYKDEISGYK 626
K++Y+ +I+ Y+
Sbjct: 152 KEKYEKDIAAYR 163
Score = 155 (59.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
PN P+ MS + FF Q RE KK +P + F + + ERWK MS +E+ +E A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
+DK RY E+ Y PK
Sbjct: 66 SDKARYDREMKNYVPPK 82
>RGD|1564519 [details] [associations]
symbol:RGD1564519 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001063065 Ncbi:XP_001063065
Length = 210
Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ D + LGE W + S ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 615 KKRYKDEISGYK 626
K++Y+ +I+ Y+
Sbjct: 152 KEKYEKDIAAYR 163
Score = 154 (59.3 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
PN P+ MS + FF Q RE KK +P + F + + ERWK MS +E+ +E A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
+DK RY E+ Y PK
Sbjct: 66 SDKARYDREMKNYVPPK 82
>RGD|69291 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005615
"extracellular space" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
[GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
[GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
"male gonad development" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
evidence=IEP] [GO:0031493 "nucleosomal histone binding"
evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
"positive regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
[GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
GermOnline:ENSRNOG00000030313 Uniprot:P52925
Length = 210
Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ D + LGE W + S ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 615 KKRYKDEISGYK 626
K++Y+ +I+ Y+
Sbjct: 152 KEKYEKDIAAYR 163
Score = 154 (59.3 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
PN P+ MS + FF Q RE KK +P + F + + ERWK MS +E+ +E A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
+DK RY E+ Y PK
Sbjct: 66 SDKARYDREMKNYVPPK 82
>RGD|1561694 [details] [associations]
symbol:RGD1561694 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_003752741 Ncbi:XP_003752789
Length = 209
Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ D + LGE W + S ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 615 KKRYKDEISGYK 626
K++Y+ +I+ Y+
Sbjct: 152 KEKYEKDIAAYR 163
Score = 150 (57.9 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
PN P+ MS + FF Q RE KK +P + F + + ERWK MS +E+ +E A+
Sbjct: 6 PNKPRGKMSLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
+DK RY E+ Y PK
Sbjct: 66 SDKARYDREMKNYVPPK 82
>UNIPROTKB|F1MF42 [details] [associations]
symbol:LOC618297 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
Uniprot:F1MF42
Length = 196
Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ D + LGE W + S ++++PYE KA
Sbjct: 81 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 140
Query: 615 KKRYKDEISGYK 626
K++Y+ +I+ Y+
Sbjct: 141 KEKYEKDIAAYR 152
Score = 116 (45.9 bits), Expect = 0.00018, P = 0.00018
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 573 RENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPK 629
RE KK +P + F + + ERWK MS +E+ +E A++DK RY E+ Y PK
Sbjct: 13 REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPK 71
>RGD|1559962 [details] [associations]
symbol:RGD1559962 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074365 Ncbi:XP_001074365
Length = 209
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ D + LGE W + S ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 615 KKRYKDEISGYK 626
K+ Y+ +I+ Y+
Sbjct: 152 KEEYEKDIAAYR 163
Score = 149 (57.5 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
PN P+ MS + FF Q RE K +P + F + + ERWK MS +E+ +E A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
+DK RY E+ Y PK
Sbjct: 66 SDKARYDREMKNYVPPK 82
>MGI|MGI:96157 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0008289 "lipid binding"
evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IPI] [GO:0031493
"nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
regulation of nuclease activity" evidence=ISO] [GO:0042056
"chemoattractant activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive
regulation of DNA metabolic process" evidence=ISO] [GO:0060326
"cell chemotaxis" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
CleanEx:MM_HMGB2 Genevestigator:P30681
GermOnline:ENSMUSG00000054717 Uniprot:P30681
Length = 210
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ D + LGE W + S ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 615 KKRYKDEISGYK 626
K++Y+ +I+ Y+
Sbjct: 152 KEKYEKDIAAYR 163
Score = 154 (59.3 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
PN P+ MS + FF Q RE KK +P + F + + ERWK MS +E+ +E A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
+DK RY E+ Y PK
Sbjct: 66 SDKARYDREMKNYVPPK 82
>UNIPROTKB|P10103 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9913
"Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
cell activation" evidence=IDA] [GO:0042056 "chemoattractant
activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043280 "positive regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
Uniprot:P10103
Length = 215
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>UNIPROTKB|Q6YKA4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0043388 "positive regulation of
DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
Uniprot:Q6YKA4
Length = 215
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>UNIPROTKB|P09429 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
"calcium-dependent protein kinase regulator activity" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0045639 "positive regulation of
myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
"response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
"negative regulation of apoptotic cell clearance" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
"positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA] [GO:0005125 "cytokine activity"
evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
[GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0017053 "transcriptional repressor complex"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0070491
"repressing transcription factor binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006921 "cellular component disassembly involved in execution
phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0050918 "positive chemotaxis"
evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
Ensembl:ENST00000341423 Ensembl:ENST00000399494
Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
Length = 215
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>UNIPROTKB|F2Z594 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
clearance" evidence=IEA] [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0051384 "response to
glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045639 "positive regulation
of myeloid cell differentiation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043280
"positive regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0010858 "calcium-dependent protein kinase regulator activity"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0002437 "inflammatory response to
antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
Length = 215
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>RGD|1585821 [details] [associations]
symbol:LOC680968 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
Length = 213
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 150 (57.9 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>RGD|1591683 [details] [associations]
symbol:LOC681718 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076717 IPI:IPI00767302
Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
Uniprot:F1MA29
Length = 215
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>RGD|2802 [details] [associations]
symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IDA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005615
"extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
binding" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
replication" evidence=IDA] [GO:0008201 "heparin binding"
evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
"cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=ISO] [GO:0010942 "positive
regulation of cell death" evidence=IMP] [GO:0010976 "positive
regulation of neuron projection development" evidence=IMP]
[GO:0014911 "positive regulation of smooth muscle cell migration"
evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISO]
[GO:0030295 "protein kinase activator activity" evidence=ISO]
[GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEP] [GO:0032868 "response to insulin stimulus"
evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=ISO] [GO:0034341 "response to interferon-gamma"
evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
"response to drug" evidence=IEP] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=ISO]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=ISO] [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IMP] [GO:0045819 "positive regulation of
glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0050727 "regulation of inflammatory response"
evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
[GO:0050831 "male-specific defense response to bacterium"
evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
[GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
"repressing transcription factor binding" evidence=ISO] [GO:0071347
"cellular response to interleukin-1" evidence=IEP] [GO:0017053
"transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
Length = 215
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>UNIPROTKB|D4A9T3 [details] [associations]
symbol:D4A9T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564375
Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
Length = 184
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 150 (57.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>UNIPROTKB|P07156 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:10029
"Cricetulus griseus" [GO:0000793 "condensed chromosome"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
Length = 180
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 57 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 116
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 117 KEKYEKDIAAYRAKGKP 133
>WB|WBGene00001972 [details] [associations]
symbol:hmg-1.2 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0001708 "cell fate
specification" evidence=IMP] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IGI] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0001708 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040010 GO:GO:0008406 GO:GO:0016055 GO:GO:0003677
GO:GO:0010171 GO:GO:0040018 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:FO080618
GO:GO:0040035 GO:GO:0040025 Pfam:PF09011 EMBL:AF056577 PIR:T43009
RefSeq:NP_001022599.1 RefSeq:NP_001022600.1 RefSeq:NP_498375.1
UniGene:Cel.10345 ProteinModelPortal:Q09390 SMR:Q09390
IntAct:Q09390 STRING:Q09390 PaxDb:Q09390 PRIDE:Q09390
EnsemblMetazoa:F47D12.4a.1 EnsemblMetazoa:F47D12.4a.2 GeneID:175890
KEGG:cel:CELE_F47D12.4 UCSC:F47D12.4a.1 CTD:175890
WormBase:F47D12.4a WormBase:F47D12.4b WormBase:F47D12.4c
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 InParanoid:Q09390
KO:K11295 OMA:GEDAMRK NextBio:890170 Uniprot:Q09390
Length = 235
Score = 170 (64.9 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P+APKRA+S F F+SQ +R I+ +P V + LG+ WK + E ++ YE KA+AD
Sbjct: 132 PHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQAD 191
Query: 615 KKRYKDEISGYK 626
K RY DE+ YK
Sbjct: 192 KDRYADEMRNYK 203
>UNIPROTKB|F1N927 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
Length = 214
Score = 164 (62.8 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +I+ Y+ +D
Sbjct: 152 KEKYEKDIAAYRAKGKVD 169
Score = 151 (58.2 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKLRYEKEMKNYVPPK 82
>UNIPROTKB|Q9YH06 [details] [associations]
symbol:HMG1 "High mobility group 1 protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
Length = 215
Score = 164 (62.8 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +I+ Y+ +D
Sbjct: 152 KEKYEKDIAAYRAKGKVD 169
Score = 151 (58.2 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKLRYEKEMKNYVPPK 82
>UNIPROTKB|P26584 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
NextBio:20816521 Uniprot:P26584
Length = 207
Score = 163 (62.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ D + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKL 151
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +I+ Y+ D
Sbjct: 152 KEKYEKDIAAYRAKSKSD 169
Score = 150 (57.9 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 31/77 (40%), Positives = 42/77 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
PN P+ MS + +F Q RE KK +P + F + R ERWK MS +E+ +E A+
Sbjct: 6 PNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
DK RY E+ Y PK
Sbjct: 66 GDKARYDREMKNYVPPK 82
>UNIPROTKB|P12682 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
Length = 215
Score = 163 (62.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + +++ PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>RGD|1586285 [details] [associations]
symbol:LOC691220 "hypothetical protein LOC691220" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 163 (62.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I Y+ KP
Sbjct: 152 KEKYEKDIPAYRAKGKP 168
Score = 150 (57.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>RGD|1588313 [details] [associations]
symbol:LOC679451 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 163 (62.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I Y+ KP
Sbjct: 152 KEKYEKDIPAYRAKGKP 168
Score = 150 (57.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>RGD|1596979 [details] [associations]
symbol:LOC678705 "hypothetical protein LOC678705" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001053005
Ncbi:XP_001053005
Length = 214
Score = 163 (62.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEIWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 150 (57.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>GENEDB_PFALCIPARUM|PFL0145c [details] [associations]
symbol:PFL0145c "high mobility group protein"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000785 "chromatin" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0000785 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AE014188 HOGENOM:HOG000197861 HSSP:P11632 OMA:FFANDNR
GenomeReviews:AE014188_GR RefSeq:XP_001350438.1
ProteinModelPortal:Q8I616 EnsemblProtists:PFL0145c:mRNA
GeneID:811082 KEGG:pfa:PFL0145c EuPathDB:PlasmoDB:PF3D7_1202900
ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 162 (62.1 bits), Expect = 5.3e-11, P = 5.3e-11
Identities = 30/77 (38%), Positives = 50/77 (64%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P+APKR++S ++FF++ +R I P ++ VG+++GE W K+ +E+ P+E KA+
Sbjct: 18 PHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKAQ 77
Query: 613 ADKKRYKDEISGYKNPK 629
DK RY+ E + Y N K
Sbjct: 78 EDKLRYEKEKAEYANMK 94
>UNIPROTKB|Q8I616 [details] [associations]
symbol:HMGB1 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0000785 "chromatin" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AE014188 HOGENOM:HOG000197861
HSSP:P11632 OMA:FFANDNR GenomeReviews:AE014188_GR
RefSeq:XP_001350438.1 ProteinModelPortal:Q8I616
EnsemblProtists:PFL0145c:mRNA GeneID:811082 KEGG:pfa:PFL0145c
EuPathDB:PlasmoDB:PF3D7_1202900 ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 162 (62.1 bits), Expect = 5.3e-11, P = 5.3e-11
Identities = 30/77 (38%), Positives = 50/77 (64%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P+APKR++S ++FF++ +R I P ++ VG+++GE W K+ +E+ P+E KA+
Sbjct: 18 PHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKAQ 77
Query: 613 ADKKRYKDEISGYKNPK 629
DK RY+ E + Y N K
Sbjct: 78 EDKLRYEKEKAEYANMK 94
>UNIPROTKB|P0C6E5 [details] [associations]
symbol:P0C6E5 "Putative high mobility group protein B3-like
protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
Genevestigator:P0C6E5 Uniprot:P0C6E5
Length = 187
Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR SGF F K +NPGI DV + LGE WK ++ E++PY ++A
Sbjct: 89 PNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKL 148
Query: 615 KKRYKDEISGYKNPKPMD 632
K++Y+ +++ YK+ D
Sbjct: 149 KEKYEKDVAVYKSKGKSD 166
Score = 141 (54.7 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 30/73 (41%), Positives = 38/73 (52%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ + A+
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAK 65
Query: 613 ADKKRYKDEISGY 625
ADK Y EI Y
Sbjct: 66 ADKVHYDQEIKDY 78
>RGD|1589841 [details] [associations]
symbol:LOC690940 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
Length = 214
Score = 158 (60.7 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ + + Y+ KP
Sbjct: 152 KEKYEKDTAAYRAKGKP 168
Score = 155 (59.6 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++V + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>RGD|1593466 [details] [associations]
symbol:LOC689398 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
Length = 214
Score = 158 (60.7 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPYEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ + + Y+ KP
Sbjct: 152 KEKYEKDTAAYRAKGKP 168
Score = 155 (59.6 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++V + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>UNIPROTKB|E9PES6 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
Length = 153
Score = 157 (60.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 30/64 (46%), Positives = 40/64 (62%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR SGF F R IK +NPGI+ DV + LGE W ++ E++PY +KA
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL 149
Query: 615 KKRY 618
K++Y
Sbjct: 150 KEKY 153
Score = 143 (55.4 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + FF Q RE KK NP + F + + ERWK MS +E+ ++ A+
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAK 65
Query: 613 ADKKRYKDEISGY 625
ADK RY E+ Y
Sbjct: 66 ADKVRYDREMKDY 78
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 157 (60.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P APKRA+S ++F+ + +R I K P +A VG+++GE W ++S ++ PYE KA+
Sbjct: 21 PLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQ 80
Query: 613 ADKKRYKDEISGYK 626
DK RY EI Y+
Sbjct: 81 LDKVRYSKEIEEYR 94
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 157 (60.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P APKRA+S ++F+ + +R I K P +A VG+++GE W ++S ++ PYE KA+
Sbjct: 21 PLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQ 80
Query: 613 ADKKRYKDEISGYK 626
DK RY EI Y+
Sbjct: 81 LDKVRYSKEIEEYR 94
>UNIPROTKB|D6R9A6 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048545
"response to steroid hormone stimulus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
Uniprot:D6R9A6
Length = 134
Score = 155 (59.6 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
PN P+ MS + FF Q RE KK +P + F + + ERWK MS +E+ +E A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
+DK RY E+ Y PK
Sbjct: 66 SDKARYDREMKNYVPPK 82
Score = 103 (41.3 bits), Expect = 0.00012, P = 0.00012
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERW 596
PNAPKR S F F R IK +PG++ D + LGE W
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMW 133
>UNIPROTKB|E1BIF8 [details] [associations]
symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
Uniprot:E1BIF8
Length = 194
Score = 153 (58.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 555 PNAPKRAMSGF-IFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARA 613
PNAPKR SGF +FFS+ E IK +NPGI+ DV + LGE W +S +++ Y +K A
Sbjct: 87 PNAPKRPPSGFFLFFSEFCSE-IKSTNPGISIGDVAKKLGEMWNNLSDSKKQLYVNKD-A 144
Query: 614 DKKRYKDEISGYK 626
K+Y+ +++ YK
Sbjct: 145 KLKKYEKDVADYK 157
Score = 129 (50.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKS-NPGIAFTDVGRVLGERWKKMSVEEREPYESKARA 613
P PK MS FF QM R+ KK+ + F + + ERWK MS +E+ ++ A+A
Sbjct: 6 PEKPKGKMSAHAFFVQMCRKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDEMAKA 65
Query: 614 DKKRYKDEISGYKNPK 629
DK Y E+ Y + K
Sbjct: 66 DKVHYNQEMKDYGSAK 81
>UNIPROTKB|J9P699 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
Uniprot:J9P699
Length = 196
Score = 150 (57.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
Score = 149 (57.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYK 619
K++Y+
Sbjct: 152 KEKYE 156
>UNIPROTKB|Q5T7C4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
UCSC:uc001usv.3 Uniprot:Q5T7C4
Length = 158
Score = 150 (57.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
Score = 149 (57.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 151
Query: 615 KKRYK 619
K++Y+
Sbjct: 152 KEKYE 156
>UNIPROTKB|Q5T7C6 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681
IPI:IPI00645948 SMR:Q5T7C6 MINT:MINT-1373108
Ensembl:ENST00000426225 Uniprot:Q5T7C6
Length = 162
Score = 150 (57.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
Score = 130 (50.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYE 608
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PYE
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 145
>UNIPROTKB|D4A2L7 [details] [associations]
symbol:D4A2L7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00948102
Ensembl:ENSRNOT00000030194 ArrayExpress:D4A2L7 Uniprot:D4A2L7
Length = 135
Score = 150 (57.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
Score = 111 (44.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 577 KKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 626
K +PG++ DV + LGE W + ++++PYE KA K++Y+ +I+ Y+
Sbjct: 82 KGEHPGLSIGDVVKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 131
>UNIPROTKB|Q5T7C0 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
"eye development" evidence=IEA] [GO:0005125 "cytokine activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
regulator activity" evidence=IEA] [GO:0030295 "protein kinase
activator activity" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
Ensembl:ENST00000398908 Uniprot:Q5T7C0
Length = 97
Score = 150 (57.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>RGD|1588759 [details] [associations]
symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
Length = 212
Score = 154 (59.3 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR F F R IK +PG++ DV + LGE W +V++++P E KA
Sbjct: 92 PNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWNNTAVDDKQPCEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKPMDIDSG 636
K++Y+ +I+ Y+ KP + G
Sbjct: 152 KEKYEKDIAAYRAKGKPDAVKKG 174
Score = 146 (56.5 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q +E KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCQEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>UNIPROTKB|F1N1P2 [details] [associations]
symbol:F1N1P2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02056400
IPI:IPI00904552 Ensembl:ENSBTAT00000020361 Uniprot:F1N1P2
Length = 199
Score = 147 (56.8 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P APKR SG + F IK ++PGI+ DV + LGE W +S E++PY +KA A
Sbjct: 89 PKAPKRLPSGCLLFCSEFHPKIKSTHPGISIRDVAKKLGEMWNNLSDSEKQPYINKA-AK 147
Query: 615 KKRYKDEISGYKNPKPMDIDSG 636
K+Y+ + + +K+ D G
Sbjct: 148 LKKYEKDAADHKSRGKFDGTKG 169
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/93 (35%), Positives = 45/93 (48%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK M + FF QM RE KK N + F + + ERWK MS +E+ ++ A+
Sbjct: 6 PKKPKGKMCAYAFFVQMCREEHKKKNSEVPVNFAEFSKKCSERWKTMSRKEKSKFDEMAK 65
Query: 613 ADKKRYKDEISGY--------KNPK-PMDIDSG 636
A K Y E+ Y K+PK P + SG
Sbjct: 66 AYKMHYDQEMKDYGPARGGKKKDPKAPKRLPSG 98
>TAIR|locus:505006135 [details] [associations]
symbol:HMGB2 "high mobility group B2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0046686 "response to
cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
GO:GO:0030527 Uniprot:O49596
Length = 144
Score = 147 (56.8 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 32/89 (35%), Positives = 42/89 (47%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP-GIAFTDVGRVLGERWKKMSVEEREPYESKARA 613
PN PKR S F F + RE KK NP + VG+ G++WK +S E+ PY +KA
Sbjct: 35 PNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEK 94
Query: 614 DKKRYKDEISGYKNPKPMDIDSGNESDSA 642
K Y+ I Y ESD +
Sbjct: 95 RKVEYEKNIKAYNKKLEEGPKEDEESDKS 123
>RGD|1560584 [details] [associations]
symbol:RGD1560584 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00559222
Ensembl:ENSRNOT00000049438 Uniprot:D3ZIU9
Length = 204
Score = 149 (57.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNA KR S F F R IK +PG++ DV + LGE W +V++++P E KA
Sbjct: 92 PNALKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAVDDKQPCEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 143 (55.4 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 31/77 (40%), Positives = 42/77 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKS--NPGIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS FF Q RE KK N + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSHAFFVQTCREEHKKKHLNASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>FB|FBgn0011764 [details] [associations]
symbol:Dsp1 "Dorsal switch protein 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0043388 "positive
regulation of DNA binding" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0017025 "TBP-class protein binding" evidence=IPI]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0032502 "developmental process" evidence=IMP] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0006338 "chromatin
remodeling" evidence=IMP] [GO:0007379 "segment specification"
evidence=IMP] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0035218 "leg disc development" evidence=IMP] [GO:0008348
"negative regulation of antimicrobial humoral response"
evidence=IGI;IMP] [GO:0005700 "polytene chromosome" evidence=IDA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 EMBL:AE014298 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0003697 GO:GO:0007379 GO:GO:0005700
GO:GO:0043388 Pfam:PF09011 GO:GO:0006268
GeneTree:ENSGT00560000076898 EMBL:U13881 EMBL:X89811 EMBL:X81456
EMBL:AY060841 PIR:JC6179 PIR:S50068 RefSeq:NP_542446.2
RefSeq:NP_727959.2 RefSeq:NP_727960.1 RefSeq:NP_727961.1
RefSeq:NP_996485.1 UniGene:Dm.2879 ProteinModelPortal:Q24537
SMR:Q24537 DIP:DIP-29511N MINT:MINT-344326 STRING:Q24537
PaxDb:Q24537 PRIDE:Q24537 EnsemblMetazoa:FBtr0089263 GeneID:117294
KEGG:dme:Dmel_CG12223 CTD:117294 FlyBase:FBgn0011764
InParanoid:Q24537 KO:K10802 OrthoDB:EOG480GCJ ChiTaRS:Dsp1
GenomeRNAi:117294 NextBio:841819 Bgee:Q24537 GermOnline:CG12223
GO:GO:0035218 GO:GO:0008348 GO:GO:0017055 Uniprot:Q24537
Length = 393
Score = 165 (63.1 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR++S F +F ER +K NP D+ + LG +W + E ++ YES A D
Sbjct: 268 PNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERD 327
Query: 615 KKRYKDEISGYK 626
K RY+ E++ YK
Sbjct: 328 KARYEREMTEYK 339
Score = 128 (50.1 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 558 PKRAMSGFIFFSQMERENIKKSNPG--IAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
P+ M+ + +F Q RE KK +P + F + R ERWK M +E++ + A DK
Sbjct: 179 PRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDK 238
Query: 616 KRYKDEISGYKNPKPMDIDSGNE 638
+RY+ E+ Y PK + G +
Sbjct: 239 QRYEAEMQNYVPPKGAVVGRGKK 261
>ZFIN|ZDB-GENE-030131-8480 [details] [associations]
symbol:hmgb1b "high-mobility group box 1b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-8480 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 eggNOG:NOG320947 EMBL:AL929092 EMBL:BC146744
IPI:IPI00854267 UniGene:Dr.47534 SMR:A6H8T4
Ensembl:ENSDART00000108983 NextBio:20932104 Uniprot:A6H8T4
Length = 165
Score = 143 (55.4 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + +F Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 5 PRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
Query: 613 ADKKRYKDEISGYKNPK 629
DK RY+ E+ Y PK
Sbjct: 65 QDKVRYEREMKNYIPPK 81
Score = 114 (45.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 577 KKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 626
K NPG++ D+ + LGE W S E ++PYE KA K++Y +I+ Y+
Sbjct: 81 KGENPGLSIGDIAKKLGEMWNSSSAEVKQPYEKKAAKLKEKYDKDIALYR 130
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 234 RLQGQANDFKIQYSSVVRLFLLPKSNQP 261
+ + A K++Y ++ ++ PK P
Sbjct: 58 KFEDMAKQDKVRYEREMKNYIPPKGENP 85
>RGD|2319002 [details] [associations]
symbol:LOC100365478 "high-mobility group box 1-like"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:2319002 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
IPI:IPI00958625 Ensembl:ENSRNOT00000062071 Uniprot:F1LWU2
Length = 186
Score = 143 (55.4 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNA KR S F+F S R IK +PG++ DV + LGE W +++++P E KA
Sbjct: 91 PNALKRPPSAFLFCSD-HRPKIKGKHPGLSIGDVAKNLGEMWNSTVMDDKQPSEKKATKL 149
Query: 615 KKRYKDEISGYK-NPKPMDIDSG 636
K+ Y+ +I+ Y+ KP + G
Sbjct: 150 KETYEKDIAAYRAKGKPDAVKKG 172
Score = 125 (49.1 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK +S + FF Q E+ KK +P + F++ + ERWK M +E YE A+
Sbjct: 6 PQNPKGKVSSYTFFVQTWEEH-KKQHPDASVNFSEFSKKCSERWKTMCAKENGKYEDMAK 64
Query: 613 ADKKRYKDEISGYKNPK 629
ADK ++ E+ Y PK
Sbjct: 65 ADKAHHEREMKTYILPK 81
>RGD|1589528 [details] [associations]
symbol:LOC679344 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
Length = 215
Score = 151 (58.2 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F IK +PG++ DV + LGE W + ++++P E KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 140 (54.3 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P + MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>RGD|1592627 [details] [associations]
symbol:LOC685520 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
Length = 215
Score = 151 (58.2 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F IK +PG++ DV + LGE W + ++++P E KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 140 (54.3 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P + MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
>RGD|1587112 [details] [associations]
symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
Length = 215
Score = 151 (58.2 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F R IK +PG++ DV + LGE W + ++++PY A
Sbjct: 92 PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAADDKQPYGKMAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 138 (53.6 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMAK 65
Query: 613 ADKKRYKDEISGY 625
ADK RY+ E+ Y
Sbjct: 66 ADKARYEREMKTY 78
>UNIPROTKB|J3QR61 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000580654
Uniprot:J3QR61
Length = 153
Score = 119 (46.9 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 18/73 (24%), Positives = 42/73 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P P + + ++ +S+ + +K SNP + ++G+++G W+ ++ EE++ Y ++ A+
Sbjct: 45 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 104
Query: 615 KKRYKDEISGYKN 627
K Y + + Y N
Sbjct: 105 KIEYNESMKAYHN 117
Score = 45 (20.9 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 6 SFNNISLGGRGGTN 19
++NN LGG GTN
Sbjct: 17 AYNNYRLGGNPGTN 30
>RGD|1594733 [details] [associations]
symbol:LOC690521 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001074673 Ncbi:XP_001074673
Length = 213
Score = 150 (57.9 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 66 ADKARYEREMKTYIPPK 82
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F+F S+ R IK +P ++ DV + LGE W + ++++P E A
Sbjct: 92 PNAPKRPPSAFLFCSEY-RPKIKGEHPALSIGDVTKKLGEVWTNTASDDKQPCEKMAAKL 150
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ + + Y+ KP
Sbjct: 151 KEKYEKDTAAYRAKGKP 167
>RGD|1563668 [details] [associations]
symbol:RGD1563668 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074778 Ncbi:XP_001074778
Length = 211
Score = 149 (57.5 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPK S F F R IK +PG++ DV + LGE W + ++++PYE A
Sbjct: 92 PNAPKTPPSAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWTNTAADDKQPYEKMAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYRAKGKP 168
Score = 143 (55.4 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P + MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y +PK
Sbjct: 66 ADKARYEREMKTYISPK 82
>UNIPROTKB|B2RPK0 [details] [associations]
symbol:HMGB1P1 "Putative high mobility group protein
B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
Length = 211
Score = 149 (57.5 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR S F F IK +PG++ DV + LGE W + ++++P E KA
Sbjct: 92 PNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKL 151
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 152 KEKYEKDIAAYQAKGKP 168
Score = 136 (52.9 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKK--SNPGIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK S+ + F++ ERWK MS +E+ +E A+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK Y+ ++ Y PK
Sbjct: 66 ADKTHYERQMKTYIPPK 82
>RGD|2319567 [details] [associations]
symbol:LOC100361707 "Ac2-008-like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 RGD:2319567 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:AC128270
IPI:IPI00382302 Ensembl:ENSRNOT00000047163 ArrayExpress:F1LNG6
Uniprot:F1LNG6
Length = 219
Score = 150 (57.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P P+ MS + FF Q RE KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 134 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 193
Query: 613 ADKKRYKDEISGYKNPK 629
ADK RY+ E+ Y PK
Sbjct: 194 ADKARYEREMKTYIPPK 210
>ZFIN|ZDB-GENE-050417-290 [details] [associations]
symbol:hmgb3b "high-mobility group box 3b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
Length = 198
Score = 143 (55.4 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK MS + +F + RE K NPG+ F++ + ERWK MS +E+ +E A+
Sbjct: 6 PGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLAK 65
Query: 613 ADKKRYKDEISGYKNP 628
DK RY E+ Y NP
Sbjct: 66 QDKARYDQEMMHY-NP 80
Score = 141 (54.7 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAP+R SGF F +R IK NP + DV + LG W +S E++P+ S A
Sbjct: 91 PNAPRRPPSGFFLFCAEQRPIIKAQNPSLGIGDVAKKLGGMWNNLSDSEKQPFLSNADKL 150
Query: 615 KKRYKDEISGYK 626
K +Y+ +++ Y+
Sbjct: 151 KDKYQKDMAFYR 162
>UNIPROTKB|C9JQA7 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
Uniprot:C9JQA7
Length = 142
Score = 136 (52.9 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN PK ++G++ F RE I+ +P + F ++ ++LG W K+ E++ Y +A +
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
Query: 615 KKRYKDEISGYK 626
K++Y E+ Y+
Sbjct: 127 KQQYMKELRAYQ 138
>RGD|1583212 [details] [associations]
symbol:LOC685091 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001062256 Ncbi:XP_001062256
Length = 203
Score = 143 (55.4 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNA KR S F+F S R IK +PG++ DV + LGE W +++++P E KA
Sbjct: 99 PNALKRPPSAFLFCSD-HRPKIKGKHPGLSIGDVAKNLGEMWNSTVMDDKQPSEKKATKL 157
Query: 615 KKRYKDEISGYK-NPKPMDIDSG 636
K+ Y+ +I+ Y+ KP + G
Sbjct: 158 KETYEKDIAAYRAKGKPDAVKKG 180
Score = 125 (49.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P PK +S + FF Q E+ KK +P + F++ + ERWK M +E YE A+
Sbjct: 14 PQNPKGKVSSYTFFVQTWEEH-KKQHPDASVNFSEFSKKCSERWKTMCAKENGKYEDMAK 72
Query: 613 ADKKRYKDEISGYKNPK 629
ADK ++ E+ Y PK
Sbjct: 73 ADKAHHEREMKTYILPK 89
>UNIPROTKB|F1M1H9 [details] [associations]
symbol:F1M1H9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
Length = 179
Score = 133 (51.9 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 555 PNAPKRAMSGFI-FFSQMERENIKKSN--PGIAFTDVGRVLGERWKKMSVEEREPYESKA 611
P P+ MS + FF Q RE KK + + F++ + ERWK MS +E+ +E A
Sbjct: 6 PKKPRGKMSSYYAFFVQTCREEHKKKHWDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 65
Query: 612 RADKKRYKDEISGYKNPK 629
+ADK RY+ E+ Y PK
Sbjct: 66 KADKARYEREMKTYIPPK 83
Score = 130 (50.8 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P+AP+R F F IK +PG++ DV + LGE W + ++++P E KA
Sbjct: 93 PDAPRRPPLAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKL 152
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ + + Y+ KP
Sbjct: 153 KEKYEKDNAAYRAKGKP 169
>MGI|MGI:1914117 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IMP] [GO:0045665
"negative regulation of neuron differentiation" evidence=IGI;IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1914117 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045665 GO:GO:0006351
GO:GO:0016568 GO:GO:0000122 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 CTD:10363
HOVERGEN:HBG059870 OMA:DKERYMR OrthoDB:EOG4H4643 ChiTaRS:HMG20A
EMBL:DQ182735 EMBL:AK004596 EMBL:AK017716 EMBL:AK032790
EMBL:AK039222 EMBL:AK086346 EMBL:AK134213 EMBL:BC013804
EMBL:BC068257 IPI:IPI00120110 IPI:IPI00228054 IPI:IPI00458691
IPI:IPI00473389 RefSeq:NP_080088.1 UniGene:Mm.150856
ProteinModelPortal:Q9DC33 SMR:Q9DC33 IntAct:Q9DC33 STRING:Q9DC33
PhosphoSite:Q9DC33 PaxDb:Q9DC33 PRIDE:Q9DC33
Ensembl:ENSMUST00000034879 GeneID:66867 KEGG:mmu:66867
UCSC:uc009ptb.1 UCSC:uc009ptc.1 UCSC:uc009ptd.1 UCSC:uc009pte.1
GeneTree:ENSGT00700000104521 InParanoid:Q9DC33 NextBio:322867
Bgee:Q9DC33 CleanEx:MM_HMG20A Genevestigator:Q9DC33
GermOnline:ENSMUSG00000032329 Uniprot:Q9DC33
Length = 346
Score = 151 (58.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 556 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
NAPK ++G++ F RE ++ P + F ++ R+LG W K+ EE++ Y +A DK
Sbjct: 100 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 159
Query: 616 KRYKDEISGYKNPKPMDIDSGNESD 640
+RY E+ Y+ + + S D
Sbjct: 160 ERYMKELEQYQKTEAYKVFSRKTQD 184
>UNIPROTKB|F1LZ54 [details] [associations]
symbol:F1LZ54 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00765905
Ensembl:ENSRNOT00000045990 Uniprot:F1LZ54
Length = 160
Score = 131 (51.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP--GIAFTDVGRVLGERWKKMSVEEREPYESKAR 612
P K ++ + FF Q +E KK +P + F++ + ERWK MS +E+ +E A+
Sbjct: 6 PKQLKVKLNSYAFFVQAYQEEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKGKFEDVAK 65
Query: 613 ADKKRYKDEISGYKNPK 629
ADK Y+ E+ Y +PK
Sbjct: 66 ADKAHYEREMKTYISPK 82
Score = 127 (49.8 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN KR + F+F S+ IK +PG++ DV LGE W +++E ++PYE KA
Sbjct: 92 PNVHKRPLLVFLFCSEY-CPKIKGEHPGLSIGDVVTKLGEMWNNIAMENKQPYEKKATNL 150
Query: 615 KKRYKDEIS 623
K++Y+ +I+
Sbjct: 151 KEKYEKDIA 159
>UNIPROTKB|Q0VCL5 [details] [associations]
symbol:HMG20A "High-mobility group 20A" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870
OMA:DKERYMR OrthoDB:EOG4H4643 GeneTree:ENSGT00700000104521
EMBL:DAAA02052476 EMBL:DAAA02052477 EMBL:BC120108 IPI:IPI00714562
RefSeq:NP_001069105.1 UniGene:Bt.103436 SMR:Q0VCL5
Ensembl:ENSBTAT00000027243 GeneID:513719 KEGG:bta:513719
InParanoid:Q0VCL5 NextBio:20871001 Uniprot:Q0VCL5
Length = 347
Score = 151 (58.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 556 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
NAPK ++G++ F RE ++ P + F ++ R+LG W K+ EE++ Y +A DK
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 616 KRYKDEISGYKNPKPMDIDSGNESD 640
+RY E+ Y+ + + S D
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQD 185
>UNIPROTKB|E2RKW6 [details] [associations]
symbol:HMG20A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
CTD:10363 OMA:DKERYMR GeneTree:ENSGT00700000104521
EMBL:AAEX03016351 RefSeq:XP_853367.1 ProteinModelPortal:E2RKW6
Ensembl:ENSCAFT00000028701 GeneID:487661 KEGG:cfa:487661
NextBio:20861223 Uniprot:E2RKW6
Length = 347
Score = 151 (58.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 556 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
NAPK ++G++ F RE ++ P + F ++ R+LG W K+ EE++ Y +A DK
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 616 KRYKDEISGYKNPKPMDIDSGNESD 640
+RY E+ Y+ + + S D
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQD 185
>UNIPROTKB|Q9NP66 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003677 "DNA binding"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006325 "chromatin organization" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH471136 GO:GO:0006325
CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:AF146222
EMBL:AL355736 EMBL:AL355737 EMBL:AK001601 EMBL:BT006716
EMBL:AK223100 EMBL:AC090984 EMBL:BC021959 IPI:IPI00018924
IPI:IPI00759508 RefSeq:NP_060670.1 UniGene:Hs.69594
ProteinModelPortal:Q9NP66 SMR:Q9NP66 IntAct:Q9NP66
MINT:MINT-1198360 STRING:Q9NP66 PhosphoSite:Q9NP66 DMDM:74734297
PaxDb:Q9NP66 PeptideAtlas:Q9NP66 PRIDE:Q9NP66 DNASU:10363
Ensembl:ENST00000336216 Ensembl:ENST00000381714 GeneID:10363
KEGG:hsa:10363 UCSC:uc002bcq.1 UCSC:uc002bcr.3
GeneCards:GC15P077712 HGNC:HGNC:5001 HPA:HPA008126 MIM:605534
neXtProt:NX_Q9NP66 PharmGKB:PA29331 InParanoid:Q9NP66 OMA:DKERYMR
OrthoDB:EOG4H4643 PhylomeDB:Q9NP66 ChiTaRS:HMG20A GenomeRNAi:10363
NextBio:39285 ArrayExpress:Q9NP66 Bgee:Q9NP66 CleanEx:HS_HMG20A
Genevestigator:Q9NP66 GermOnline:ENSG00000140382 Uniprot:Q9NP66
Length = 347
Score = 151 (58.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 556 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
NAPK ++G++ F RE ++ P + F ++ R+LG W K+ EE++ Y +A DK
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 616 KRYKDEISGYKNPKPMDIDSGNESD 640
+RY E+ Y+ + + S D
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQD 185
>RGD|1564760 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0016568 "chromatin modification" evidence=ISO]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 Pfam:PF00505 RGD:1564760 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 IPI:IPI00565616
Ensembl:ENSRNOT00000022903 UCSC:RGD:1564760 ArrayExpress:D3Z9E3
Uniprot:D3Z9E3
Length = 376
Score = 151 (58.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 556 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
NAPK ++G++ F RE ++ P + F ++ R+LG W K+ EE++ Y +A DK
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 616 KRYKDEISGYKNPKPMDIDSGNESD 640
+RY E+ Y+ + + S D
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQD 185
>UNIPROTKB|H0YKM5 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] EMBL:AC090984 Ensembl:ENST00000560867 HGNC:HGNC:5001
ChiTaRS:HMG20A Bgee:H0YKM5 GO:GO:0005634 Gene3D:1.10.30.10
InterPro:IPR009071 Pfam:PF00505 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Uniprot:H0YKM5
Length = 162
Score = 129 (50.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 556 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
NAPK ++G++ F RE ++ P + F ++ R+LG W K+ EE++ Y +A DK
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 616 KR 617
+R
Sbjct: 161 ER 162
>UNIPROTKB|J3QKX6 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000582955
Uniprot:J3QKX6
Length = 129
Score = 106 (42.4 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 16/66 (24%), Positives = 39/66 (59%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P P + + ++ +S+ + +K SNP + ++G+++G W+ ++ EE++ Y ++ A+
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 615 KKRYKD 620
K Y +
Sbjct: 123 KIEYNE 128
Score = 45 (20.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 6 SFNNISLGGRGGTN 19
++NN LGG GTN
Sbjct: 35 AYNNYRLGGNPGTN 48
>UNIPROTKB|F1N8B1 [details] [associations]
symbol:LOC100857252 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 IPI:IPI00571034 OMA:DKERYMR
GeneTree:ENSGT00700000104521 EMBL:AADN02040486 EMBL:AADN02040487
EMBL:AADN02040488 EMBL:AADN02040489 EMBL:AADN02074740
EMBL:AADN02074741 EMBL:AADN02074742 EMBL:AADN02074743
Ensembl:ENSGALT00000004328 ArrayExpress:F1N8B1 Uniprot:F1N8B1
Length = 348
Score = 148 (57.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 556 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
NAPK ++G++ F RE ++ P + F ++ R+LG W K+ EE+ Y +A DK
Sbjct: 102 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDK 161
Query: 616 KRYKDEISGYKNPKPMDIDSGNESD 640
+RY E+ Y+ + + S D
Sbjct: 162 ERYMRELEQYQKTEAYKVFSRKAQD 186
>UNIPROTKB|Q5ZKF4 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AJ720130 IPI:IPI00571034 RefSeq:NP_001025565.1
UniGene:Gga.15892 ProteinModelPortal:Q5ZKF4 SMR:Q5ZKF4
GeneID:415346 KEGG:gga:415346 CTD:10363 HOGENOM:HOG000247029
HOVERGEN:HBG059870 InParanoid:Q5ZKF4 NextBio:20818969
Uniprot:Q5ZKF4
Length = 348
Score = 148 (57.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 556 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
NAPK ++G++ F RE ++ P + F ++ R+LG W K+ EE+ Y +A DK
Sbjct: 102 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDK 161
Query: 616 KRYKDEISGYKNPKPMDIDSGNESD 640
+RY E+ Y+ + + S D
Sbjct: 162 ERYMRELEQYQKTEAYKVFSRKAQD 186
>UNIPROTKB|F1M607 [details] [associations]
symbol:F1M607 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00558117 Ensembl:ENSRNOT00000046997 Uniprot:F1M607
Length = 211
Score = 140 (54.3 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P+APKR S F R IK +PG++ DV R LGE W + ++++P E A+
Sbjct: 88 PSAPKRLPSAFFLLCSEYRPKIKGEHPGLSIGDVARKLGEMWNNTAADDKQPCEKAAKL- 146
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 147 KEKYEKDIAAYRAKGKP 163
Score = 117 (46.2 bits), Expect = 0.00019, P = 0.00019
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P P+ MS + FF E E K + + F + + ERWK MS +E+ +E+ A+A
Sbjct: 6 PKKPRGKMSSYTFFGGEEHEK-KHPDAFVNFLEFSKKCSERWKTMSAKEKGEFENMAKA- 63
Query: 615 KKRYKDEISGYKNPK 629
K R++ E+ Y +PK
Sbjct: 64 KARHEREMKTYISPK 78
>TAIR|locus:2053893 [details] [associations]
symbol:HMGB4 "high mobility group B4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006084 "acetyl-CoA metabolic
process" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0000785 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006333 EMBL:AC007584 HOGENOM:HOG000197860 GO:GO:0030527
eggNOG:NOG320947 EMBL:Y14074 EMBL:F20020 EMBL:AF370150
EMBL:AF370562 EMBL:AY150467 EMBL:AK317044 EMBL:AY086336
IPI:IPI00516334 IPI:IPI00656969 PIR:F84553 PIR:T51596
RefSeq:NP_001031364.2 RefSeq:NP_001077909.1 RefSeq:NP_179347.1
UniGene:At.481 HSSP:P11632 ProteinModelPortal:Q42344 SMR:Q42344
STRING:Q42344 PaxDb:Q42344 PRIDE:Q42344 EnsemblPlants:AT2G17560.1
EnsemblPlants:AT2G17560.2 GeneID:816263 KEGG:ath:AT2G17560
TAIR:At2g17560 InParanoid:Q42344 OMA:LANPNNK PhylomeDB:Q42344
ProtClustDB:CLSN2683898 Genevestigator:Q42344 Uniprot:Q42344
Length = 138
Score = 127 (49.8 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 31/88 (35%), Positives = 43/88 (48%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGI-AFTDVGRVLGERWKKMSVEEREPYESKARA 613
PN PKR S F F + R+ +NP + VG+ G RWK M+ E++ PY +KA +
Sbjct: 32 PNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAES 91
Query: 614 DKKRYKDEISGYKNPKPMDIDSGNESDS 641
K Y + Y N K + E DS
Sbjct: 92 RKTEYIKNVQQY-NLKLASGTNREEDDS 118
>TAIR|locus:2128003 [details] [associations]
symbol:HMGB5 "high mobility group B5" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0000785 GO:GO:0003700 GO:GO:0003682 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006333 EMBL:AL161587 EMBL:AL031135 HOGENOM:HOG000197860
GO:GO:0030527 HSSP:P11632 EMBL:Y14075 EMBL:AK317173 EMBL:BT025597
EMBL:AY085615 IPI:IPI00535971 PIR:T04662 RefSeq:NP_195282.1
UniGene:At.482 ProteinModelPortal:O49597 SMR:O49597 STRING:O49597
PaxDb:O49597 PRIDE:O49597 EnsemblPlants:AT4G35570.1 GeneID:829709
KEGG:ath:AT4G35570 TAIR:At4g35570 InParanoid:O49597 OMA:YNMELAN
PhylomeDB:O49597 ProtClustDB:CLSN2916185 Genevestigator:O49597
Uniprot:O49597
Length = 125
Score = 124 (48.7 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNP-GIAFTDVGRVLGERWKKMSVEEREPYESKARA 613
PN PK+ S F F R+ +NP + +VGR G++WK M+ EER P+ +K+++
Sbjct: 31 PNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQS 90
Query: 614 DKKRYKDEISGYKNPKPMDIDSGNES 639
K Y + Y M++ +GN++
Sbjct: 91 KKTEYAVTMQQYN----MELANGNKT 112
>UNIPROTKB|Q32L34 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9913
"Bos taurus" [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 EMBL:BC109790 IPI:IPI00760422
RefSeq:NP_001035652.1 UniGene:Bt.54197 ProteinModelPortal:Q32L34
Ensembl:ENSBTAT00000000438 GeneID:539195 KEGG:bta:539195 CTD:127540
InParanoid:Q32L34 KO:K11297 OMA:RYQEEMM OrthoDB:EOG4255TS
NextBio:20877839 Uniprot:Q32L34
Length = 194
Score = 133 (51.9 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P+AP+R S F+ F Q +K NP + V + G+ W + +++PYE +A
Sbjct: 90 PHAPRRPPSSFLLFCQDHYAQLKSENPSWSVVQVAKASGKMWSAKTDVDKQPYEQRAALL 149
Query: 615 KKRYKDEISGYKN 627
+ +Y++E+S Y+N
Sbjct: 150 RAKYREELSVYRN 162
Score = 116 (45.9 bits), Expect = 0.00017, P = 0.00017
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 558 PKRAMSGFIFFSQMERENIKKSNPG--IAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
PK +S +I F R K+ P + F + R E+W+ +S E+ YE+ A+ DK
Sbjct: 9 PKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
Query: 616 KRYKDEISGY 625
RY++E+ Y
Sbjct: 69 ARYQEEMMNY 78
>UNIPROTKB|C9J8X5 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
Uniprot:C9J8X5
Length = 215
Score = 136 (52.9 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN PK ++G++ F RE I+ +P + F ++ ++LG W K+ E++ Y +A +
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
Query: 615 KKRYKDEISGYK 626
K++Y E+ Y+
Sbjct: 127 KQQYMKELRAYQ 138
>DICTYBASE|DDB_G0282427 [details] [associations]
symbol:DDB_G0282427 "HMG1/2 (high mobility group)
box-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016
SMART:SM00184 SMART:SM00249 dictyBase:DDB_G0282427 Pfam:PF00505
EMBL:AAFI02000047 GO:GO:0046872 GO:GO:0008270 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 RefSeq:XP_640043.1 ProteinModelPortal:Q54SJ6
EnsemblProtists:DDB0220651 GeneID:8623570 KEGG:ddi:DDB_G0282427
InParanoid:Q54SJ6 OMA:YMNINRE Uniprot:Q54SJ6
Length = 795
Score = 145 (56.1 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/78 (30%), Positives = 51/78 (65%)
Query: 558 PKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKR 617
P+ +S + + + RE+ K+ NP + +D+ ++LG +WK+++ ++++ Y KAR DK R
Sbjct: 327 PRSNVSAYFHYMNINREDEKRMNPDVPLSDISKILGAKWKQLTPDDQKEYYEKAREDKIR 386
Query: 618 YKDEISGYKNPKPMDIDS 635
Y++E+ Y N K ++++
Sbjct: 387 YENEMVLY-NQKCKEVEN 403
>SGD|S000002160 [details] [associations]
symbol:NHP10 "Protein related to mammalian high mobility
group proteins" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0042766 "nucleosome mobilization"
evidence=IDA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045027 "DNA end binding" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 SGD:S000002160 Pfam:PF00505
GO:GO:0006355 EMBL:BK006938 GO:GO:0006351 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0031011 GO:GO:0006302 GO:GO:0042766 EMBL:Z48008 GO:GO:0000404
GO:GO:0045027 PIR:S50980 RefSeq:NP_010282.3 RefSeq:NP_010286.3
ProteinModelPortal:Q03435 SMR:Q03435 DIP:DIP-1387N IntAct:Q03435
MINT:MINT-388714 STRING:Q03435 PaxDb:Q03435 PeptideAtlas:Q03435
EnsemblFungi:YDL002C GeneID:851562 GeneID:851566 KEGG:sce:YDL002C
KEGG:sce:YDR003W CYGD:YDL002c HOGENOM:HOG000001026 KO:K11680
OMA:AYLLFCE OrthoDB:EOG4RV61X NextBio:968998 Genevestigator:Q03435
GermOnline:YDL002C Uniprot:Q03435
Length = 203
Score = 131 (51.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN PKR + ++ + +M +E I+++ DV R L E WK ++ ++R+PY D
Sbjct: 91 PNMPKRPTNAYLLYCEMNKERIRQNGS----LDVTRDLAEGWKNLNEQDRKPYYKLYSED 146
Query: 615 KKRYKDEISGYKNPKPMDIDSGNESD 640
++RY+ E+ Y N K +ID+ ++ +
Sbjct: 147 RERYQMEMEIY-NKKISNIDADDDKE 171
>TAIR|locus:2010587 [details] [associations]
symbol:AT1G04880 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR009071 InterPro:IPR001606
Pfam:PF01388 PROSITE:PS51011 SMART:SM00501 Pfam:PF00505
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC004809 Gene3D:1.10.150.60
SUPFAM:SSF46774 HSSP:P07155 HOGENOM:HOG000243289
ProtClustDB:CLSN2681954 EMBL:BT020255 EMBL:BT020442 EMBL:AB493433
IPI:IPI00523331 PIR:B86182 RefSeq:NP_171980.1 UniGene:At.42427
ProteinModelPortal:Q9MAT6 SMR:Q9MAT6 PaxDb:Q9MAT6 PRIDE:Q9MAT6
EnsemblPlants:AT1G04880.1 GeneID:839388 KEGG:ath:AT1G04880
TAIR:At1g04880 eggNOG:NOG236327 InParanoid:Q9MAT6 OMA:EMEDYRE
PhylomeDB:Q9MAT6 Genevestigator:Q9MAT6 Uniprot:Q9MAT6
Length = 448
Score = 140 (54.3 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P+ PK SG+ FF + +K +PG D+ R++GE W K++ +E+ Y+ KA D
Sbjct: 260 PDHPKPNRSGYNFFFAEQHARLKPLHPG-KDRDISRMIGELWNKLNEDEKLIYQGKAMED 318
Query: 615 KKRYKDEISGYKNPK 629
K+RY+ E+ Y+ K
Sbjct: 319 KERYRTEMEDYREKK 333
>UNIPROTKB|E2R4Z8 [details] [associations]
symbol:HMG20B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA] [GO:0033234 "negative regulation of
protein sumoylation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104521 OMA:RLRKMNT EMBL:AAEX03012575
EMBL:AAEX03012576 Ensembl:ENSCAFT00000030501 Uniprot:E2R4Z8
Length = 316
Score = 136 (52.9 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN PK ++G++ F RE I+ +P + F ++ ++LG W K+ E++ Y +A +
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 126
Query: 615 KKRYKDEISGYK 626
K++Y E+ Y+
Sbjct: 127 KQQYMKELRAYQ 138
>UNIPROTKB|Q32L68 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
Length = 317
Score = 136 (52.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN PK ++G++ F RE I+ +P + F ++ ++LG W K+ E++ Y +A +
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 126
Query: 615 KKRYKDEISGYK 626
K++Y E+ Y+
Sbjct: 127 KQQYMKELRAYQ 138
>UNIPROTKB|Q9P0W2 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006325 "chromatin organization"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0007596
"blood coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_604 InterPro:IPR009071 PROSITE:PS00353
EMBL:AF331191 Pfam:PF00505 GO:GO:0005694 GO:GO:0005654
GO:GO:0003677 GO:GO:0007596 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049 EMBL:CH471139
GO:GO:0006325 EMBL:AC005786 HOVERGEN:HBG059870 CTD:10362
EMBL:AF146223 EMBL:AL355709 EMBL:AF288679 EMBL:AF072165
EMBL:AK090733 EMBL:BC002552 EMBL:BC003505 EMBL:BC004408
EMBL:BC021585 EMBL:AF072836 EMBL:CR456754 IPI:IPI00464951
IPI:IPI00478316 IPI:IPI00929221 RefSeq:NP_006330.2
UniGene:Hs.406534 ProteinModelPortal:Q9P0W2 SMR:Q9P0W2
IntAct:Q9P0W2 MINT:MINT-1372120 STRING:Q9P0W2 PhosphoSite:Q9P0W2
DMDM:57012878 PRIDE:Q9P0W2 DNASU:10362 Ensembl:ENST00000333651
GeneID:10362 KEGG:hsa:10362 UCSC:uc002lya.3 GeneCards:GC19P003572
HGNC:HGNC:5002 MIM:605535 neXtProt:NX_Q9P0W2 PharmGKB:PA29332
InParanoid:Q9P0W2 OMA:RLRKMNT ChiTaRS:HMG20B GenomeRNAi:10362
NextBio:39281 ArrayExpress:Q9P0W2 Bgee:Q9P0W2 CleanEx:HS_HMG20B
Genevestigator:Q9P0W2 GermOnline:ENSG00000064961 Uniprot:Q9P0W2
Length = 317
Score = 136 (52.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN PK ++G++ F RE I+ +P + F ++ ++LG W K+ E++ Y +A +
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
Query: 615 KKRYKDEISGYK 626
K++Y E+ Y+
Sbjct: 127 KQQYMKELRAYQ 138
>UNIPROTKB|H0YNS8 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AC090984 HGNC:HGNC:5001 ChiTaRS:HMG20A Ensembl:ENST00000559099
Bgee:H0YNS8 Uniprot:H0YNS8
Length = 156
Score = 115 (45.5 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 556 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKA 611
NAPK ++G++ F RE ++ P + F ++ R+LG W K+ EE++ Y +A
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEA 156
>UNIPROTKB|F1RXE6 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 GeneTree:ENSGT00390000003628
EMBL:CU856162 Ensembl:ENSSSCT00000019017 OMA:HANINAK Uniprot:F1RXE6
Length = 194
Score = 119 (46.9 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 18/73 (24%), Positives = 42/73 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P P + + ++ +S+ + +K SNP + ++G+++G W+ ++ EE++ Y ++ A+
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 615 KKRYKDEISGYKN 627
K Y + + Y N
Sbjct: 123 KIEYNESMKAYHN 135
Score = 45 (20.9 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 6 SFNNISLGGRGGTN 19
++NN LGG GTN
Sbjct: 35 AYNNYRLGGNPGTN 48
>UNIPROTKB|Q86G49 [details] [associations]
symbol:egl-13 "Protein EGL-13, isoform b" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0001708 GO:GO:0018991 GO:GO:0040011
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0040035 GO:GO:0030163 GO:GO:0009653
GO:GO:0040025 GO:GO:0045026 GeneTree:ENSGT00690000101789
EMBL:FO081738 HSSP:P35710 UCSC:T22B7.1c.2 HOGENOM:HOG000020384
NextBio:911168 ProteinModelPortal:Q86G49 SMR:Q86G49 STRING:Q86G49
EnsemblMetazoa:T22B7.1b.1 EnsemblMetazoa:T22B7.1b.2
WormBase:T22B7.1b ArrayExpress:Q86G49 Uniprot:Q86G49
Length = 316
Score = 127 (49.8 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARA 613
PN KR M+ F+ +++ ER I K+ P + +++ ++LG RWK MS E++PY E ++R
Sbjct: 172 PNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRL 231
Query: 614 DKKRYKDEISGYK-NPKP 630
K + ++ Y+ P+P
Sbjct: 232 SKL-HMEQHPDYRYRPRP 248
Score = 49 (22.3 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 2 TDGPSFNNISLGGRGGTNPGQLKIYS 27
+DG FNN S G + PG + S
Sbjct: 135 SDGQLFNNCSPNSSGKSTPGNTSVTS 160
>UNIPROTKB|H2L0M3 [details] [associations]
symbol:egl-13 "Protein EGL-13, isoform d" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0001708 GO:GO:0018991 GO:GO:0040011
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0040035 GO:GO:0030163 GO:GO:0009653
GO:GO:0040025 GO:GO:0045026 GeneTree:ENSGT00690000101789
EMBL:FO081738 ProteinModelPortal:H2L0M3 SMR:H2L0M3
EnsemblMetazoa:T22B7.1d WormBase:T22B7.1d Uniprot:H2L0M3
Length = 319
Score = 127 (49.8 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARA 613
PN KR M+ F+ +++ ER I K+ P + +++ ++LG RWK MS E++PY E ++R
Sbjct: 175 PNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRL 234
Query: 614 DKKRYKDEISGYK-NPKP 630
K + ++ Y+ P+P
Sbjct: 235 SKL-HMEQHPDYRYRPRP 251
Score = 49 (22.3 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 2 TDGPSFNNISLGGRGGTNPGQLKIYS 27
+DG FNN S G + PG + S
Sbjct: 138 SDGQLFNNCSPNSSGKSTPGNTSVTS 163
>FB|FBgn0004362 [details] [associations]
symbol:HmgD "High mobility group protein D" species:7227
"Drosophila melanogaster" [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=IDA]
[GO:0003680 "AT DNA binding" evidence=IDA] [GO:0008301 "DNA
binding, bending" evidence=IDA;NAS] [GO:0007517 "muscle organ
development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] InterPro:IPR009071 Pfam:PF00505 EMBL:AE013599
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048813
GO:GO:0007517 GO:GO:0006325 GO:GO:0003680 eggNOG:NOG320947
EMBL:M77023 EMBL:X71138 EMBL:AM294353 EMBL:AM294354 EMBL:AM294355
EMBL:AM294356 EMBL:AM294357 EMBL:AM294358 EMBL:AM294359
EMBL:AM294360 EMBL:AM294361 EMBL:AM294362 EMBL:AM294363
EMBL:AY118333 PIR:A44382 RefSeq:NP_001163244.1 RefSeq:NP_726109.1
RefSeq:NP_726110.1 UniGene:Dm.7318 PDB:1E7J PDB:1HMA PDB:1QRV
PDB:3NM9 PDBsum:1E7J PDBsum:1HMA PDBsum:1QRV PDBsum:3NM9
ProteinModelPortal:Q05783 SMR:Q05783 DIP:DIP-22805N IntAct:Q05783
MINT:MINT-843935 STRING:Q05783 PaxDb:Q05783 PRIDE:Q05783
EnsemblMetazoa:FBtr0071708 EnsemblMetazoa:FBtr0071709
EnsemblMetazoa:FBtr0301410 GeneID:37481 KEGG:dme:Dmel_CG17950
CTD:37481 FlyBase:FBgn0004362 GeneTree:ENSGT00700000104547
InParanoid:Q05783 OMA:WRAMSEQ OrthoDB:EOG4TX98R PhylomeDB:Q05783
ChiTaRS:HmgD EvolutionaryTrace:Q05783 GenomeRNAi:37481
NextBio:803865 Bgee:Q05783 GermOnline:CG17950 Uniprot:Q05783
Length = 112
Score = 114 (45.2 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 558 PKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKR 617
PKR +S ++ + RE+IK+ NPGI T+V + GE W+ M +++ +E+KA K
Sbjct: 5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDD 62
Query: 618 YKDEISGYK 626
Y + ++
Sbjct: 63 YDRAVKEFE 71
>FB|FBgn0010228 [details] [associations]
symbol:HmgZ "HMG protein Z" species:7227 "Drosophila
melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] InterPro:IPR009071 Pfam:PF00505
EMBL:AE013599 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
eggNOG:NOG320947 GeneTree:ENSGT00700000104547 EMBL:X71139
EMBL:AY113439 PIR:S41765 RefSeq:NP_726106.1 RefSeq:NP_726107.1
UniGene:Dm.20604 ProteinModelPortal:Q06943 SMR:Q06943 PaxDb:Q06943
PRIDE:Q06943 EnsemblMetazoa:FBtr0071673 EnsemblMetazoa:FBtr0071674
GeneID:37480 KEGG:dme:Dmel_CG17921 CTD:37480 FlyBase:FBgn0010228
InParanoid:Q06943 OMA:EANGGTD OrthoDB:EOG4W0VWS PhylomeDB:Q06943
ChiTaRS:HmgZ GenomeRNAi:37480 NextBio:803858 Bgee:Q06943
GermOnline:CG17921 Uniprot:Q06943
Length = 111
Score = 114 (45.2 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 558 PKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKR 617
PKR +S ++ + RE IKK NPG TD+ + GE W+ ++++ +E KA K+
Sbjct: 6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWR--GLKDKTEWEQKAIKMKEE 63
Query: 618 YKDEISGYK 626
Y + Y+
Sbjct: 64 YNKAVKEYE 72
>MGI|MGI:1916567 [details] [associations]
symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
Length = 181
Score = 124 (48.7 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P AP++ S F+ FS+ +K+ NP V + G+ W E++PYE KA
Sbjct: 90 PKAPRKPPSSFLLFSRDHYAMLKQENPDWTVVQVAKAAGKMWSTTDEAEKKPYEQKAALM 149
Query: 615 KKRYKDEISGYKN 627
+ +Y +E Y+N
Sbjct: 150 RAKYFEEQEAYRN 162
Score = 110 (43.8 bits), Expect = 0.00064, P = 0.00064
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 558 PKRAMSGFIFFSQMERENIKKSNPG--IAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
PK +S +I F R K+ P + F + R E+W+ +S E+ YE+ A DK
Sbjct: 9 PKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAELDK 68
Query: 616 KRYKDEISGY 625
RY+ E+ Y
Sbjct: 69 ARYQQEMMNY 78
>UNIPROTKB|F1LVZ2 [details] [associations]
symbol:F1LVZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00561233 Ensembl:ENSRNOT00000040837 Uniprot:F1LVZ2
Length = 199
Score = 127 (49.8 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P+APKR +S F F S E IK +PG++ DV + LGE W + ++PY A
Sbjct: 81 PSAPKRPLSLFSFCS--EYPQIKGEHPGLSIGDVAKKLGEMWNSTDTD-KQPYGKMAAKL 137
Query: 615 KKRYKDEISGYK-NPKP 630
K++Y+ +I+ Y+ KP
Sbjct: 138 KEKYEKDIAAYRAKGKP 154
>MGI|MGI:1341190 [details] [associations]
symbol:Hmg20b "high mobility group 20B" species:10090 "Mus
musculus" [GO:0000400 "four-way junction DNA binding" evidence=ISA]
[GO:0000794 "condensed nuclear chromosome" evidence=ISA]
[GO:0002111 "BRCA2-BRAF35 complex" evidence=ISA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006325 "chromatin
organization" evidence=NAS] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IDA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IMP]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IGI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1341190
Pfam:PF00505 GO:GO:0005694 GO:GO:0003700 GO:GO:0006351
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007049 GO:GO:0045666 GO:GO:0035914
GO:GO:0033234 HOGENOM:HOG000247029 HOVERGEN:HBG059870
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT ChiTaRS:HMG20B EMBL:AF067430 EMBL:AF146224
EMBL:AL355734 EMBL:AL355735 EMBL:BC011334 IPI:IPI00323315
RefSeq:NP_001156637.1 RefSeq:NP_001156638.1 RefSeq:NP_034570.1
UniGene:Mm.38474 PDB:2CRJ PDBsum:2CRJ ProteinModelPortal:Q9Z104
SMR:Q9Z104 IntAct:Q9Z104 STRING:Q9Z104 PhosphoSite:Q9Z104
PRIDE:Q9Z104 Ensembl:ENSMUST00000020454 Ensembl:ENSMUST00000105323
Ensembl:ENSMUST00000105324 Ensembl:ENSMUST00000167481 GeneID:15353
KEGG:mmu:15353 eggNOG:NOG241877 InParanoid:Q9Z104
EvolutionaryTrace:Q9Z104 NextBio:287960 Bgee:Q9Z104
CleanEx:MM_HMG20B Genevestigator:Q9Z104
GermOnline:ENSMUSG00000020232 GO:GO:0002111 GO:GO:0000400
Uniprot:Q9Z104
Length = 317
Score = 133 (51.9 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN PK ++G++ F RE I+ +P + F ++ ++LG W K+ E++ Y +A +
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKE 126
Query: 615 KKRYKDEISGYK 626
K++Y E+ Y+
Sbjct: 127 KQQYLKELWAYQ 138
>RGD|1309235 [details] [associations]
symbol:Hmg20b "high mobility group 20 B" species:10116 "Rattus
norvegicus" [GO:0033234 "negative regulation of protein
sumoylation" evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0045666 "positive regulation of
neuron differentiation" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1309235 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH474029
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT IPI:IPI00365950 RefSeq:NP_001102201.1 UniGene:Rn.162912
Ensembl:ENSRNOT00000028002 GeneID:362825 KEGG:rno:362825
UCSC:RGD:1309235 NextBio:681393 Uniprot:D4A586
Length = 318
Score = 133 (51.9 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN PK ++G++ F RE I+ +P + F ++ ++LG W K+ E++ Y +A +
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKE 126
Query: 615 KKRYKDEISGYK 626
K++Y E+ Y+
Sbjct: 127 KQQYLKELWAYQ 138
>RGD|3759 [details] [associations]
symbol:Sry "sex determining region Y" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007530 "sex determination" evidence=ISO]
[GO:0007548 "sex differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008301 "DNA
binding, bending" evidence=ISO] [GO:0008584 "male gonad development"
evidence=ISO] [GO:0010629 "negative regulation of gene expression"
evidence=ISO] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IPI] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0030238 "male sex determination" evidence=ISO;IEP]
[GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA polymerase
II promoter" evidence=IDA] [GO:2000020 "positive regulation of male
gonad development" evidence=ISO] InterPro:IPR009071 Pfam:PF00505
RGD:3759 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0016607
GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548
GO:GO:0030238 HOVERGEN:HBG008712 InterPro:IPR027151
PANTHER:PTHR10270:SF84 EMBL:X89730 EMBL:AJ222688 EMBL:Z26907
IPI:IPI00551785 PIR:S58088 ProteinModelPortal:P36394 SMR:P36394
PRIDE:P36394 Genevestigator:P36394 Uniprot:P36394
Length = 121
Score = 111 (44.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 19/68 (27%), Positives = 41/68 (60%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRY 618
KR M+ F+ +S+ ER + + NP + +++ + LG +WK ++ E+ P+ +A+ K +
Sbjct: 6 KRPMNAFMVWSRGERHKLAQQNPSMQNSEISKQLGYQWKSLTEAEKRPFFQEAQRLKTLH 65
Query: 619 KDEISGYK 626
+++ YK
Sbjct: 66 REKYPNYK 73
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 133 (51.9 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P PK+ +S ++ ++ R +K N + +V ++ GE WK +S E++ PY+ A+ +
Sbjct: 243 PLKPKQPISAYLIYANERRAALKGENKSVI--EVAKMAGEEWKNLSEEKKAPYDQMAKKN 300
Query: 615 KKRYKDEISGYKNPK 629
K+ Y E+ GYK K
Sbjct: 301 KEIYLQEMEGYKRTK 315
Score = 131 (51.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRY 618
KR + +I + + +KK NP F + +LG +WK +S EE++PYE K +ADK+ Y
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADKEAY 189
Query: 619 KDEISGYKNPK 629
I+ K +
Sbjct: 190 LQVITKEKRER 200
Score = 118 (46.6 bits), Expect = 0.00081, P = 0.00081
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN PK+ S + F + R+++ + +PGI + V + +W ++ EE++ Y SKA
Sbjct: 369 PNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAEL 428
Query: 615 KKRYKDEISGYKNPK 629
+ YK E+ Y K
Sbjct: 429 MEAYKKEVEEYNKTK 443
>UNIPROTKB|Q4PIT4 [details] [associations]
symbol:egl-13 "Protein EGL-13, isoform c" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0001708 GO:GO:0018991 GO:GO:0040011
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0040035 GO:GO:0030163 GO:GO:0009653
GO:GO:0040025 GO:GO:0045026 GeneTree:ENSGT00690000101789
EMBL:FO081738 UniGene:Cel.8590 GeneID:180833 KEGG:cel:CELE_T22B7.1
UCSC:T22B7.1c.2 CTD:180833 HOGENOM:HOG000020384 NextBio:911168
RefSeq:NP_001024920.1 ProteinModelPortal:Q4PIT4 SMR:Q4PIT4
STRING:Q4PIT4 EnsemblMetazoa:T22B7.1c.1 EnsemblMetazoa:T22B7.1c.2
WormBase:T22B7.1c ArrayExpress:Q4PIT4 Uniprot:Q4PIT4
Length = 422
Score = 127 (49.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARA 613
PN KR M+ F+ +++ ER I K+ P + +++ ++LG RWK MS E++PY E ++R
Sbjct: 278 PNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRL 337
Query: 614 DKKRYKDEISGYK-NPKP 630
K + ++ Y+ P+P
Sbjct: 338 SKL-HMEQHPDYRYRPRP 354
Score = 49 (22.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 2 TDGPSFNNISLGGRGGTNPGQLKIYS 27
+DG FNN S G + PG + S
Sbjct: 241 SDGQLFNNCSPNSSGKSTPGNTSVTS 266
>WB|WBGene00001182 [details] [associations]
symbol:egl-13 species:6239 "Caenorhabditis elegans"
[GO:0018991 "oviposition" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0030163
"protein catabolic process" evidence=IMP] [GO:0009653 "anatomical
structure morphogenesis" evidence=IMP] [GO:0040025 "vulval
development" evidence=IMP] [GO:0045026 "plasma membrane fusion"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0001708 "cell fate specification" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0001708
GO:GO:0018991 GO:GO:0040011 GO:GO:0003700 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035
GO:GO:0030163 GO:GO:0009653 GO:GO:0040025 GO:GO:0045026
GeneTree:ENSGT00690000101789 eggNOG:NOG253815 EMBL:FO081738
EMBL:AF097319 PIR:T25909 PIR:T43675 RefSeq:NP_001024918.1
UniGene:Cel.8590 HSSP:P35710 ProteinModelPortal:Q23045 SMR:Q23045
IntAct:Q23045 STRING:Q23045 PRIDE:Q23045 EnsemblMetazoa:T22B7.1a
GeneID:180833 KEGG:cel:CELE_T22B7.1 UCSC:T22B7.1c.2 CTD:180833
WormBase:T22B7.1a HOGENOM:HOG000020384 InParanoid:Q23045
OMA:STISDHT NextBio:911168 ArrayExpress:Q23045 Uniprot:Q23045
Length = 470
Score = 127 (49.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARA 613
PN KR M+ F+ +++ ER I K+ P + +++ ++LG RWK MS E++PY E ++R
Sbjct: 326 PNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRL 385
Query: 614 DKKRYKDEISGYK-NPKP 630
K + ++ Y+ P+P
Sbjct: 386 SKL-HMEQHPDYRYRPRP 402
Score = 49 (22.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 2 TDGPSFNNISLGGRGGTNPGQLKIYS 27
+DG FNN S G + PG + S
Sbjct: 289 SDGQLFNNCSPNSSGKSTPGNTSVTS 314
>UNIPROTKB|Q23045 [details] [associations]
symbol:egl-13 "Protein EGL-13, isoform a" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0001708 GO:GO:0018991 GO:GO:0040011
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0040035 GO:GO:0030163 GO:GO:0009653
GO:GO:0040025 GO:GO:0045026 GeneTree:ENSGT00690000101789
eggNOG:NOG253815 EMBL:FO081738 EMBL:AF097319 PIR:T25909 PIR:T43675
RefSeq:NP_001024918.1 UniGene:Cel.8590 HSSP:P35710
ProteinModelPortal:Q23045 SMR:Q23045 IntAct:Q23045 STRING:Q23045
PRIDE:Q23045 EnsemblMetazoa:T22B7.1a GeneID:180833
KEGG:cel:CELE_T22B7.1 UCSC:T22B7.1c.2 CTD:180833 WormBase:T22B7.1a
HOGENOM:HOG000020384 InParanoid:Q23045 OMA:STISDHT NextBio:911168
ArrayExpress:Q23045 Uniprot:Q23045
Length = 470
Score = 127 (49.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARA 613
PN KR M+ F+ +++ ER I K+ P + +++ ++LG RWK MS E++PY E ++R
Sbjct: 326 PNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRL 385
Query: 614 DKKRYKDEISGYK-NPKP 630
K + ++ Y+ P+P
Sbjct: 386 SKL-HMEQHPDYRYRPRP 402
Score = 49 (22.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 2 TDGPSFNNISLGGRGGTNPGQLKIYS 27
+DG FNN S G + PG + S
Sbjct: 289 SDGQLFNNCSPNSSGKSTPGNTSVTS 314
>TAIR|locus:2128504 [details] [associations]
symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
Genevestigator:Q9SUP7 Uniprot:Q9SUP7
Length = 456
Score = 130 (50.8 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN PK+ S + FS+ ER+ + + PG V ++ +WK++S EE++ Y KA
Sbjct: 376 PNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKL 435
Query: 615 KKRYKDEISGYKNPK 629
+ YK E+ Y N K
Sbjct: 436 MEAYKKEVEAY-NKK 449
Score = 128 (50.1 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRY 618
KR S ++ + + + +KK NP F + +LG +WK +S E+++PYE + + +K+ Y
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAY 198
Query: 619 KDEISGYKNPK 629
I+ K K
Sbjct: 199 LQVIAKEKREK 209
Score = 122 (48.0 bits), Expect = 0.00031, P = 0.00031
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P PK +S F+ ++ R +++ N + +V ++ GE WK +S +++ PYE A+ +
Sbjct: 252 PLKPKHPVSAFLVYANERRAALREENKSVV--EVAKITGEEWKNLSDKKKAPYEKVAKKN 309
Query: 615 KKRYKDEISGYKNPK 629
K+ Y + YK K
Sbjct: 310 KETYLQAMEEYKRTK 324
>UNIPROTKB|J3KT85 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000577721
Uniprot:J3KT85
Length = 101
Score = 107 (42.7 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 16/63 (25%), Positives = 38/63 (60%)
Query: 565 FIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISG 624
++ +S+ + +K SNP + ++G+++G W+ ++ EE++ Y ++ A+K Y + +
Sbjct: 3 YMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKA 62
Query: 625 YKN 627
Y N
Sbjct: 63 YHN 65
>UNIPROTKB|F1S992 [details] [associations]
symbol:SOX-6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 InterPro:IPR027153 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00690000101789 PANTHER:PTHR10270:SF89 EMBL:CU462935
EMBL:CU576535 Ensembl:ENSSSCT00000014619 ArrayExpress:F1S992
Uniprot:F1S992
Length = 247
Score = 124 (48.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + +++ ++LG RWK MS +E++PY E +AR K
Sbjct: 41 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKI- 99
Query: 618 YKDEISGYK-NPKP 630
+ ++ YK P+P
Sbjct: 100 HLEKYPNYKYKPRP 113
>UNIPROTKB|E1BQW7 [details] [associations]
symbol:SOX30 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000981 "sequence-specific DNA binding RNA polymerase
II transcription factor activity" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0031960 "response to
corticosteroid stimulus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0043565 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000981 GO:GO:0031960
OMA:VPQLDIG GeneTree:ENSGT00670000098123 EMBL:AADN02028684
IPI:IPI00596095 Ensembl:ENSGALT00000005911 Uniprot:E1BQW7
Length = 548
Score = 128 (50.1 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRY 618
KR M+ F+ ++++ R + K+NP ++ LG W K++ E+++PY +AR K+R+
Sbjct: 136 KRPMNAFMVWARIHRPALAKANPNANNAEISVQLGLEWSKLTEEQKQPYYDEARKIKQRH 195
Query: 619 KDEISGYK-NPKP 630
++E G+ P+P
Sbjct: 196 REEFPGWVYQPRP 208
>UNIPROTKB|F1LTL3 [details] [associations]
symbol:F1LTL3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00562366 Ensembl:ENSRNOT00000048766 Uniprot:F1LTL3
Length = 168
Score = 114 (45.2 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD-KKR 617
KR S F+F S+ + IK +PG++ DV + LGE W + ++R+PYE + A K++
Sbjct: 91 KRLPSAFLFCSE-DHPKIKGEHPGLSIGDVAKKLGEMWTT-ATDDRQPYEKRKAAKLKEK 148
Query: 618 YKDEISGYK 626
K ++ Y+
Sbjct: 149 AKGNLAAYR 157
>UNIPROTKB|Q8WW32 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 EMBL:CH471059 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
EMBL:AL121980 HOGENOM:HOG000197861 HOVERGEN:HBG009000 CTD:127540
KO:K11297 OMA:RYQEEMM EMBL:DQ207367 EMBL:AK311985 EMBL:BC021180
IPI:IPI00815726 RefSeq:NP_660206.2 UniGene:Hs.568628
UniGene:Hs.667683 HSSP:P17741 ProteinModelPortal:Q8WW32 SMR:Q8WW32
PhosphoSite:Q8WW32 DMDM:74730920 PRIDE:Q8WW32 DNASU:127540
Ensembl:ENST00000519684 Ensembl:ENST00000522796 GeneID:127540
KEGG:hsa:127540 GeneCards:GC01P034326 HGNC:HGNC:24954 HPA:HPA035699
neXtProt:NX_Q8WW32 InParanoid:Q8WW32 PhylomeDB:Q8WW32 NextBio:82109
Bgee:Q8WW32 CleanEx:HS_HMGB4 Genevestigator:Q8WW32 Uniprot:Q8WW32
Length = 186
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 558 PKRAMSGFIFFSQMERENIKKSNPG--IAFTDVGRVLGERWKKMSVEEREPYESKARADK 615
PK +S ++ F R K+ P + F + R E+W+ +S E+ YE+ A+ DK
Sbjct: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
Query: 616 KRYKDEISGY 625
RY++E+ Y
Sbjct: 69 ARYQEEMMNY 78
Score = 110 (43.8 bits), Expect = 0.00074, P = 0.00074
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P P+R S F+ F Q +K+ NP + V + G+ W + E+ PYE +
Sbjct: 90 PQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQRVALL 149
Query: 615 KKRYKDEISGYK 626
+ +Y +E+ Y+
Sbjct: 150 RAKYFEELELYR 161
>RGD|735184 [details] [associations]
symbol:Tox2 "TOX high mobility group box family member 2"
species:10116 "Rattus norvegicus" [GO:0001085 "RNA polymerase II
transcription factor binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEP] [GO:0034698
"response to gonadotropin stimulus" evidence=IEP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] InterPro:IPR009071 Pfam:PF00505 RGD:735184
GO:GO:0005634 GO:GO:0008585 GO:GO:0034698 GO:GO:0003677
GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 CTD:84969 eggNOG:NOG291143
HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AB096685
IPI:IPI00400737 RefSeq:NP_955424.2 UniGene:Rn.129021
ProteinModelPortal:Q76IQ7 SMR:Q76IQ7 PRIDE:Q76IQ7 GeneID:311615
KEGG:rno:311615 UCSC:RGD:735184 InParanoid:Q76IQ7 OrthoDB:EOG44J2JB
NextBio:663917 ArrayExpress:Q76IQ7 Genevestigator:Q76IQ7
GermOnline:ENSRNOG00000008146 Uniprot:Q76IQ7
Length = 473
Score = 124 (48.7 bits), Expect = 0.00020, P = 0.00020
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F DV +++ W + E+++ Y+ K A
Sbjct: 201 PNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAA 260
Query: 615 KKRYKDEISGYK 626
KK Y ++ Y+
Sbjct: 261 KKEYLKALAAYR 272
>UNIPROTKB|G3XAC7 [details] [associations]
symbol:TOX2 "Chromosome 20 open reading frame 100, isoform
CRA_b" species:9606 "Homo sapiens" [GO:0001085 "RNA polymerase II
transcription factor binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008585 "female gonad development" evidence=IEA]
[GO:0034698 "response to gonadotropin stimulus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CH471077 GO:GO:0045944
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AL034419 EMBL:AL121587 EMBL:AL035089 EMBL:AL353797
UniGene:Hs.26608 GeneID:84969 KEGG:hsa:84969 CTD:84969
HGNC:HGNC:16095 GenomeRNAi:84969 NextBio:75504
RefSeq:NP_001092267.1 ProteinModelPortal:G3XAC7 SMR:G3XAC7
Ensembl:ENST00000341197 OMA:DHEASYH ArrayExpress:G3XAC7 Bgee:G3XAC7
Uniprot:G3XAC7
Length = 506
Score = 124 (48.7 bits), Expect = 0.00022, P = 0.00022
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F DV +++ W + E+++ Y+ K A
Sbjct: 243 PNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAA 302
Query: 615 KKRYKDEISGYK 626
KK Y ++ Y+
Sbjct: 303 KKEYLKALAAYR 314
>UNIPROTKB|P23497 [details] [associations]
symbol:SP100 "Nuclear autoantigen Sp-100" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0016605 "PML
body" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS]
[GO:0060333 "interferon-gamma-mediated signaling pathway"
evidence=IC;TAS] [GO:0005730 "nucleolus" evidence=IMP;IDA]
[GO:0032526 "response to retinoic acid" evidence=IDA] [GO:0034097
"response to cytokine stimulus" evidence=IDA] [GO:0034399 "nuclear
periphery" evidence=IDA] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IC] [GO:0003713 "transcription
coactivator activity" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0006978 "DNA damage response, signal
transduction by p53 class mediator resulting in transcription of
p21 class mediator" evidence=IDA] [GO:0034340 "response to type I
interferon" evidence=IDA;IMP] [GO:0034341 "response to
interferon-gamma" evidence=IDA;IMP] [GO:0060337 "type I
interferon-mediated signaling pathway" evidence=IC] [GO:0070087
"chromo shadow domain binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0019900 "kinase
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA;IMP] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0043392
"negative regulation of DNA binding" evidence=IDA] [GO:0043433
"negative regulation of sequence-specific DNA binding transcription
factor activity" evidence=IDA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0051271 "negative regulation of cellular component movement"
evidence=IMP] [GO:0032897 "negative regulation of viral
transcription" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IPI]
[GO:0008134 "transcription factor binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000770 InterPro:IPR004865
Pfam:PF01342 Pfam:PF03172 PROSITE:PS50864 PROSITE:PS51414
SMART:SM00258 Pfam:PF00505 GO:GO:0005737 Reactome:REACT_6900
GO:GO:0003714 GO:GO:0045892 GO:GO:0019048 GO:GO:0045893
GO:GO:0060333 GO:GO:0060337 GO:GO:0051091 GO:GO:0005730
GO:GO:0003677 GO:GO:0016605 GO:GO:0034097 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0003713 GO:GO:0032526 GO:GO:0051271 GO:GO:0043433
Gene3D:3.10.390.10 InterPro:IPR010919 SUPFAM:SSF63763 GO:GO:0048384
GO:GO:0034399 GO:GO:0006978 Pfam:PF09011 GO:GO:0043392
OrthoDB:EOG44QT09 GO:GO:0034340 GO:GO:0032897 EMBL:AC009949
EMBL:U36501 EMBL:AF056322 EMBL:M60618 EMBL:AF255565 EMBL:AK293373
EMBL:AC010149 EMBL:BC011562 EMBL:X95472 EMBL:L79986 EMBL:L79987
EMBL:L79988 EMBL:AF076675 EMBL:AF378670 IPI:IPI00011675
IPI:IPI00218324 IPI:IPI00218325 IPI:IPI00218326 IPI:IPI00218327
IPI:IPI00917048 IPI:IPI00917345 PIR:A37244 RefSeq:NP_001073860.1
RefSeq:NP_001193630.1 RefSeq:NP_001193631.1 RefSeq:NP_001193632.1
RefSeq:NP_001193633.1 RefSeq:NP_003104.2 UniGene:Hs.369056 PDB:1H5P
PDBsum:1H5P ProteinModelPortal:P23497 SMR:P23497 DIP:DIP-5983N
IntAct:P23497 MINT:MINT-1188807 STRING:P23497 PhosphoSite:P23497
DMDM:13878931 PaxDb:P23497 PRIDE:P23497 Ensembl:ENST00000264052
Ensembl:ENST00000340126 Ensembl:ENST00000409341
Ensembl:ENST00000409897 Ensembl:ENST00000427101 GeneID:6672
KEGG:hsa:6672 UCSC:uc002vqq.2 UCSC:uc002vqt.3 UCSC:uc002vqu.1
UCSC:uc010zmb.2 CTD:6672 GeneCards:GC02P231280 HGNC:HGNC:11206
HPA:HPA016707 HPA:HPA017384 MIM:604585 neXtProt:NX_P23497
PharmGKB:PA36043 eggNOG:NOG249894 HOVERGEN:HBG057632 KO:K15413
OMA:TESCEQV ChiTaRS:SP100 EvolutionaryTrace:P23497 GenomeRNAi:6672
NextBio:26015 ArrayExpress:P23497 Bgee:P23497 CleanEx:HS_SP100
Genevestigator:P23497 GermOnline:ENSG00000067066 Uniprot:P23497
Length = 879
Score = 134 (52.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PNAPKR F F R IK +PG++ DV + L W + +++ YE KA
Sbjct: 766 PNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKL 825
Query: 615 KKRYKDEISGYK-NPKP 630
K++YK +I+ Y+ KP
Sbjct: 826 KEKYKKDIAAYRAKGKP 842
Score = 40 (19.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 137 SQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDEN 184
++T +D+I+ +D+ G+ + D +E+ P S + ++N
Sbjct: 313 ARTHHNQASDIIV-ISSEDSEGSTDVDEPLEVFISAPRSEP-VINNDN 358
>GENEDB_PFALCIPARUM|MAL13P1.290 [details] [associations]
symbol:MAL13P1.290 "high mobility group
protein 4, putative" species:5833 "Plasmodium falciparum"
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] InterPro:IPR009071 InterPro:IPR003958
InterPro:IPR009072 Pfam:PF00808 GO:GO:0005634 GO:GO:0043565
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0003697
EMBL:AL844509 Pfam:PF09011 GO:GO:0006268 KO:K03004
RefSeq:XP_001350301.2 ProteinModelPortal:Q8IDB5
EnsemblProtists:MAL13P1.290:mRNA GeneID:813853 KEGG:pfa:MAL13P1.290
EuPathDB:PlasmoDB:PF3D7_1359200 HOGENOM:HOG000281700
ProtClustDB:CLSZ2433095 Uniprot:Q8IDB5
Length = 252
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 558 PKRAMSGFIFFSQMERENIKKS------NPGIAFTDVGRVLGERWKKMSVEEREPYESKA 611
PK S ++ F EREN K + I TD+ + L +WK + +ER+ YE +A
Sbjct: 6 PKAPPSSYLIFCNYERENAKNTLLQKCDKETIRITDIQKELSNKWKNLPEDERKKYEEQA 65
Query: 612 RADKKRYKDEISGYKN 627
+ K +Y +E+ +KN
Sbjct: 66 QILKSKYNEELLEWKN 81
>UNIPROTKB|Q8IDB5 [details] [associations]
symbol:MAL13P1.290 "High mobility group protein 4,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000785
"chromatin" evidence=ISS] [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0006268 "DNA unwinding involved in replication"
evidence=ISS] InterPro:IPR009071 InterPro:IPR003958
InterPro:IPR009072 Pfam:PF00808 GO:GO:0005634 GO:GO:0043565
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0003697
EMBL:AL844509 Pfam:PF09011 GO:GO:0006268 KO:K03004
RefSeq:XP_001350301.2 ProteinModelPortal:Q8IDB5
EnsemblProtists:MAL13P1.290:mRNA GeneID:813853 KEGG:pfa:MAL13P1.290
EuPathDB:PlasmoDB:PF3D7_1359200 HOGENOM:HOG000281700
ProtClustDB:CLSZ2433095 Uniprot:Q8IDB5
Length = 252
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 558 PKRAMSGFIFFSQMERENIKKS------NPGIAFTDVGRVLGERWKKMSVEEREPYESKA 611
PK S ++ F EREN K + I TD+ + L +WK + +ER+ YE +A
Sbjct: 6 PKAPPSSYLIFCNYERENAKNTLLQKCDKETIRITDIQKELSNKWKNLPEDERKKYEEQA 65
Query: 612 RADKKRYKDEISGYKN 627
+ K +Y +E+ +KN
Sbjct: 66 QILKSKYNEELLEWKN 81
>UNIPROTKB|E2QX86 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053
GO:GO:0045892 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651
OMA:EDESIPM GeneTree:ENSGT00390000003628 EMBL:AAEX03006463
RefSeq:XP_862912.2 Ensembl:ENSCAFT00000025430 GeneID:608250
KEGG:cfa:608250 NextBio:20893916 Uniprot:E2QX86
Length = 393
Score = 119 (46.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 18/73 (24%), Positives = 42/73 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P P + + ++ +S+ + +K SNP + ++G+++G W+ ++ EE++ Y ++ A+
Sbjct: 45 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 104
Query: 615 KKRYKDEISGYKN 627
K Y + + Y N
Sbjct: 105 KIEYNESMKAYHN 117
Score = 45 (20.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 6 SFNNISLGGRGGTN 19
++NN LGG GTN
Sbjct: 17 AYNNYRLGGNPGTN 30
>UNIPROTKB|B4DGM3 [details] [associations]
symbol:SMARCE1 "cDNA FLJ55202, highly similar to
SWI/SNF-related matrix-associatedactin-dependent regulator of
chromatin subfamily E member 1" species:9606 "Homo sapiens"
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 UniGene:Hs.740388
HGNC:HGNC:11109 HOVERGEN:HBG054558 OrthoDB:EOG4229K4 EMBL:AC004585
EMBL:AC073508 EMBL:AK294666 IPI:IPI01015411 SMR:B4DGM3
STRING:B4DGM3 Ensembl:ENST00000431889 Uniprot:B4DGM3
Length = 393
Score = 119 (46.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 18/73 (24%), Positives = 42/73 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P P + + ++ +S+ + +K SNP + ++G+++G W+ ++ EE++ Y ++ A+
Sbjct: 45 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 104
Query: 615 KKRYKDEISGYKN 627
K Y + + Y N
Sbjct: 105 KIEYNESMKAYHN 117
Score = 45 (20.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 6 SFNNISLGGRGGTN 19
++NN LGG GTN
Sbjct: 17 AYNNYRLGGNPGTN 30
>UNIPROTKB|F1SFJ1 [details] [associations]
symbol:SOX5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000741 "positive regulation of mesenchymal stem cell
differentiation" evidence=IEA] [GO:0071560 "cellular response to
transforming growth factor beta stimulus" evidence=IEA] [GO:0061036
"positive regulation of cartilage development" evidence=IEA]
[GO:0060164 "regulation of timing of neuron differentiation"
evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
[GO:0048709 "oligodendrocyte differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045165 "cell fate commitment" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0032332 "positive regulation of chondrocyte differentiation"
evidence=IEA] [GO:0021953 "central nervous system neuron
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0045892 GO:GO:0071560 GO:GO:0001701
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0032332
GO:GO:0051216 GO:GO:0048709 GO:GO:0045165 GO:GO:0061036
GO:GO:0060164 GO:GO:0021953 GeneTree:ENSGT00690000101789
GO:GO:2000741 EMBL:CU695217 Ensembl:ENSSSCT00000000610 OMA:GEEPHII
Uniprot:F1SFJ1
Length = 316
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 556 NAP--KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKAR 612
N P KR M+ F+ +++ ER I ++ P + +++ ++LG RWK M+ E++PY E +AR
Sbjct: 109 NEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQAR 168
Query: 613 ADKKRYKDEISGYK-NPKP 630
K+ + ++ YK P+P
Sbjct: 169 LSKQ-HLEKYPDYKYKPRP 186
>UNIPROTKB|Q969G3 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0017053
"transcriptional repressor complex" evidence=IPI] [GO:0008080
"N-acetyltransferase activity" evidence=IDA] [GO:0016514 "SWI/SNF
complex" evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0000228 "nuclear chromosome"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=NAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=NAS] [GO:0006337 "nucleosome disassembly" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR009071
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 EMBL:CH471152 GO:GO:0006357
GO:GO:0003682 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0003713 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 Pathway_Interaction_DB:ar_tf_pathway
GO:GO:0008080 GO:GO:0006337 GO:GO:0000228 EMBL:AF035262
EMBL:BT007176 EMBL:AK001532 EMBL:AK095047 EMBL:BC007082
EMBL:BC011017 EMBL:BC063700 IPI:IPI00017669 IPI:IPI01018063
RefSeq:NP_003070.3 UniGene:Hs.740388 ProteinModelPortal:Q969G3
SMR:Q969G3 DIP:DIP-27614N DIP:DIP-33041N IntAct:Q969G3
MINT:MINT-1137973 STRING:Q969G3 PhosphoSite:Q969G3 DMDM:61247587
PaxDb:Q969G3 PRIDE:Q969G3 DNASU:6605 Ensembl:ENST00000348513
GeneID:6605 KEGG:hsa:6605 UCSC:uc002hux.2 CTD:6605
GeneCards:GC17M038781 HGNC:HGNC:11109 HPA:HPA003916 MIM:603111
neXtProt:NX_Q969G3 PharmGKB:PA35959 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 InParanoid:Q969G3 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 GenomeRNAi:6605 NextBio:25703
ArrayExpress:Q969G3 Bgee:Q969G3 CleanEx:HS_SMARCE1
Genevestigator:Q969G3 GermOnline:ENSG00000073584 Uniprot:Q969G3
Length = 411
Score = 119 (46.9 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 18/73 (24%), Positives = 42/73 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P P + + ++ +S+ + +K SNP + ++G+++G W+ ++ EE++ Y ++ A+
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 615 KKRYKDEISGYKN 627
K Y + + Y N
Sbjct: 123 KIEYNESMKAYHN 135
Score = 45 (20.9 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 6 SFNNISLGGRGGTN 19
++NN LGG GTN
Sbjct: 35 AYNNYRLGGNPGTN 48
>MGI|MGI:1927347 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565
"nBAF complex" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
MGI:MGI:1927347 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 GO:GO:0006338 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605
eggNOG:NOG291422 HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 EMBL:AF035263 EMBL:AK076177
EMBL:BC047141 EMBL:BC061498 EMBL:BC065043 IPI:IPI00119892
RefSeq:NP_065643.1 UniGene:Mm.379086 UniGene:Mm.389717
ProteinModelPortal:O54941 SMR:O54941 IntAct:O54941 STRING:O54941
PhosphoSite:O54941 PaxDb:O54941 PRIDE:O54941
Ensembl:ENSMUST00000103133 GeneID:57376 KEGG:mmu:57376
GeneTree:ENSGT00390000003628 InParanoid:O54941 ChiTaRS:SMARCE1
NextBio:313752 Bgee:O54941 Genevestigator:O54941
GermOnline:ENSMUSG00000037935 Uniprot:O54941
Length = 411
Score = 119 (46.9 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 18/73 (24%), Positives = 42/73 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P P + + ++ +S+ + +K SNP + ++G+++G W+ ++ EE++ Y ++ A+
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 615 KKRYKDEISGYKN 627
K Y + + Y N
Sbjct: 123 KIEYNESMKAYHN 135
Score = 45 (20.9 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 6 SFNNISLGGRGGTN 19
++NN LGG GTN
Sbjct: 35 AYNNYRLGGNPGTN 48
>UNIPROTKB|B4DPY8 [details] [associations]
symbol:TOX4 "cDNA FLJ54372, highly similar to Epidermal
Langerhans cell protein LCP1" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AL161747 EMBL:AE000658 HOVERGEN:HBG051013 UniGene:Hs.555910
HGNC:HGNC:20161 ChiTaRS:TOX4 EMBL:AK298555 IPI:IPI00879111
SMR:B4DPY8 STRING:B4DPY8 Ensembl:ENST00000448790 UCSC:uc010tlu.2
Uniprot:B4DPY8
Length = 598
Score = 123 (48.4 bits), Expect = 0.00036, P = 0.00036
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 197 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 256
Query: 615 KKRYKDEISGYKN 627
KK Y ++ YK+
Sbjct: 257 KKEYLKALAAYKD 269
>UNIPROTKB|F1NCC9 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0017053 "transcriptional
repressor complex" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0071564 "npBAF complex"
evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651 OMA:EDESIPM
GeneTree:ENSGT00390000003628 EMBL:AADN02068741 IPI:IPI00580760
RefSeq:NP_001006335.2 UniGene:Gga.6244 Ensembl:ENSGALT00000006174
GeneID:420047 KEGG:gga:420047 NextBio:20823013 Uniprot:F1NCC9
Length = 412
Score = 119 (46.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/73 (24%), Positives = 42/73 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P P + + ++ +S+ + +K SNP + ++G+++G W+ ++ EE++ Y ++ A+
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 615 KKRYKDEISGYKN 627
K Y + + Y N
Sbjct: 123 KIEYNESMKAYHN 135
Score = 45 (20.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 6 SFNNISLGGRGGTN 19
++NN LGG GTN
Sbjct: 35 AYNNYRLGGNPGTN 48
>UNIPROTKB|A5PKF6 [details] [associations]
symbol:SMARCE1 "SMARCE1 protein" species:9913 "Bos taurus"
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651 OMA:EDESIPM
OrthoDB:EOG4229K4 GeneTree:ENSGT00390000003628 EMBL:DAAA02049142
EMBL:BC142470 IPI:IPI00854477 RefSeq:NP_001092586.1
UniGene:Bt.46178 STRING:A5PKF6 Ensembl:ENSBTAT00000020356
GeneID:540910 KEGG:bta:540910 InParanoid:A5PKF6 NextBio:20878909
Uniprot:A5PKF6
Length = 415
Score = 119 (46.9 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 18/73 (24%), Positives = 42/73 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P P + + ++ +S+ + +K SNP + ++G+++G W+ ++ EE++ Y ++ A+
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 615 KKRYKDEISGYKN 627
K Y + + Y N
Sbjct: 123 KIEYNESMKAYHN 135
Score = 45 (20.9 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 6 SFNNISLGGRGGTN 19
++NN LGG GTN
Sbjct: 35 AYNNYRLGGNPGTN 48
>UNIPROTKB|Q0P5K4 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9913 "Bos taurus" [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 EMBL:BC119929 IPI:IPI00689806
RefSeq:NP_001069175.1 UniGene:Bt.51979 ProteinModelPortal:Q0P5K4
SMR:Q0P5K4 Ensembl:ENSBTAT00000020149 GeneID:515314 KEGG:bta:515314
CTD:9878 HOVERGEN:HBG051013 InParanoid:Q0P5K4 OMA:PPTLKMQ
OrthoDB:EOG4JT05P NextBio:20871764 ArrayExpress:Q0P5K4
Uniprot:Q0P5K4
Length = 619
Score = 123 (48.4 bits), Expect = 0.00037, P = 0.00037
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 615 KKRYKDEISGYKN 627
KK Y ++ YK+
Sbjct: 280 KKEYLKALAAYKD 292
>MGI|MGI:1915389 [details] [associations]
symbol:Tox4 "TOX high mobility group box family member 4"
species:10090 "Mus musculus" [GO:0000785 "chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO]
InterPro:IPR009071 MGI:MGI:1915389 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
GO:GO:0072357 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
OMA:PPTLKMQ OrthoDB:EOG4JT05P ChiTaRS:TOX4 EMBL:AF228408
EMBL:AK019980 EMBL:AK088144 EMBL:AK147023 EMBL:AK147834
EMBL:BC050091 IPI:IPI00121251 RefSeq:NP_075923.2 UniGene:Mm.246237
ProteinModelPortal:Q8BU11 SMR:Q8BU11 IntAct:Q8BU11
PhosphoSite:Q8BU11 PaxDb:Q8BU11 PRIDE:Q8BU11
Ensembl:ENSMUST00000022766 GeneID:268741 KEGG:mmu:268741
InParanoid:Q3UGN7 NextBio:392465 Bgee:Q8BU11 CleanEx:MM_TOX4
Genevestigator:Q8BU11 GermOnline:ENSMUSG00000016831 Uniprot:Q8BU11
Length = 619
Score = 123 (48.4 bits), Expect = 0.00037, P = 0.00037
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 615 KKRYKDEISGYKN 627
KK Y ++ YK+
Sbjct: 280 KKEYLKALAAYKD 292
>RGD|708449 [details] [associations]
symbol:Tox4 "TOX high mobility group box family member 4"
species:10116 "Rattus norvegicus" [GO:0000785 "chromatin"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0072357 "PTW/PP1
phosphatase complex" evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR009071 Pfam:PF00505 RGD:708449
GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 HOVERGEN:HBG051013
OrthoDB:EOG4JT05P EMBL:AF267197 IPI:IPI00201166 UniGene:Rn.22195
ProteinModelPortal:Q99PM1 SMR:Q99PM1 PhosphoSite:Q99PM1
PRIDE:Q99PM1 UCSC:RGD:708449 InParanoid:Q99PM1 ArrayExpress:Q99PM1
Genevestigator:Q99PM1 GermOnline:ENSRNOG00000012844 Uniprot:Q99PM1
Length = 619
Score = 123 (48.4 bits), Expect = 0.00037, P = 0.00037
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 615 KKRYKDEISGYKN 627
KK Y ++ YK+
Sbjct: 280 KKEYLKALAAYKD 292
>UNIPROTKB|I3LAV9 [details] [associations]
symbol:TOX4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000785 "chromatin"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
OMA:PPTLKMQ EMBL:CU695044 RefSeq:XP_001929153.1 UniGene:Ssc.97365
Ensembl:ENSSSCT00000027379 GeneID:100152681 KEGG:ssc:100152681
Uniprot:I3LAV9
Length = 620
Score = 123 (48.4 bits), Expect = 0.00037, P = 0.00037
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 615 KKRYKDEISGYKN 627
KK Y ++ YK+
Sbjct: 280 KKEYLKALAAYKD 292
>UNIPROTKB|O94842 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000785 "chromatin"
evidence=IDA] [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
OMA:PPTLKMQ OrthoDB:EOG4JT05P EMBL:AB018280 EMBL:BC013689
IPI:IPI00006586 RefSeq:NP_055643.1 UniGene:Hs.555910
ProteinModelPortal:O94842 SMR:O94842 IntAct:O94842
MINT:MINT-1193640 STRING:O94842 PhosphoSite:O94842 PaxDb:O94842
PeptideAtlas:O94842 PRIDE:O94842 DNASU:9878 Ensembl:ENST00000262709
Ensembl:ENST00000405508 GeneID:9878 KEGG:hsa:9878 UCSC:uc001way.3
GeneCards:GC14P021944 HGNC:HGNC:20161 HPA:HPA017880 HPA:HPA027551
MIM:614032 neXtProt:NX_O94842 PharmGKB:PA162406753
InParanoid:O94842 PhylomeDB:O94842 ChiTaRS:TOX4 GenomeRNAi:9878
NextBio:37229 ArrayExpress:O94842 Bgee:O94842 CleanEx:HS_TOX4
Genevestigator:O94842 GermOnline:ENSG00000092203 Uniprot:O94842
Length = 621
Score = 123 (48.4 bits), Expect = 0.00038, P = 0.00038
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 615 KKRYKDEISGYKN 627
KK Y ++ YK+
Sbjct: 280 KKEYLKALAAYKD 292
>UNIPROTKB|Q5R6A9 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9601 "Pongo abelii" [GO:0072357 "PTW/PP1 phosphatase
complex" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357 HOGENOM:HOG000230949
HSSP:Q66JW3 CTD:9878 HOVERGEN:HBG051013 OrthoDB:EOG4JT05P
EMBL:CR860582 EMBL:CR861113 RefSeq:NP_001126876.1
RefSeq:NP_001128875.1 UniGene:Pab.18544 UniGene:Pab.19683
GeneID:100173889 GeneID:100189804 KEGG:pon:100173889
KEGG:pon:100189804 Uniprot:Q5R6A9
Length = 621
Score = 123 (48.4 bits), Expect = 0.00038, P = 0.00038
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 615 KKRYKDEISGYKN 627
KK Y ++ YK+
Sbjct: 280 KKEYLKALAAYKD 292
>UNIPROTKB|E1BL97 [details] [associations]
symbol:SOX13 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043565 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
OMA:TMVNCTV EMBL:DAAA02041911 IPI:IPI00825051
Ensembl:ENSBTAT00000010692 Uniprot:E1BL97
Length = 622
Score = 123 (48.4 bits), Expect = 0.00038, P = 0.00038
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + + + ++LG RWK MS +E++PY E +AR ++
Sbjct: 425 KRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQ- 483
Query: 618 YKDEISGYK-NPKP 630
+ ++ YK P+P
Sbjct: 484 HLEKYPDYKYKPRP 497
>UNIPROTKB|F1NAU5 [details] [associations]
symbol:SOX6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0016458 "gene silencing" evidence=IEA]
[GO:0021778 "oligodendrocyte cell fate specification" evidence=IEA]
[GO:0032332 "positive regulation of chondrocyte differentiation"
evidence=IEA] [GO:0035051 "cardiocyte differentiation"
evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0048821 "erythrocyte development" evidence=IEA] [GO:0051216
"cartilage development" evidence=IEA] [GO:0061036 "positive
regulation of cartilage development" evidence=IEA] [GO:0071560
"cellular response to transforming growth factor beta stimulus"
evidence=IEA] [GO:2000741 "positive regulation of mesenchymal stem
cell differentiation" evidence=IEA] InterPro:IPR009071
InterPro:IPR027153 Pfam:PF00505 GO:GO:0005634 GO:GO:0071560
GO:GO:0043565 GO:GO:0045944 GO:GO:0003700 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0032332 GO:GO:0045165 GO:GO:0016458
GO:GO:0061036 GeneTree:ENSGT00690000101789 GO:GO:2000741
OMA:FENLGPQ PANTHER:PTHR10270:SF89 EMBL:AADN02030483
EMBL:AADN02030484 EMBL:AADN02030485 EMBL:AADN02030486
EMBL:AADN02030487 EMBL:AADN02030488 EMBL:AADN02030489
EMBL:AADN02030490 EMBL:AADN02030491 EMBL:AADN02030492
EMBL:AADN02030493 EMBL:AADN02030494 EMBL:AADN02030495
EMBL:AADN02030496 EMBL:AADN02030497 EMBL:AADN02030498
EMBL:AADN02030499 EMBL:AADN02030500 EMBL:AADN02030501
EMBL:AADN02030502 EMBL:AADN02030503 EMBL:AADN02030504
EMBL:AADN02030505 IPI:IPI00597024 Ensembl:ENSGALT00000009804
Uniprot:F1NAU5
Length = 783
Score = 124 (48.7 bits), Expect = 0.00040, P = 0.00040
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + +++ ++LG RWK MS +E++PY E +AR K
Sbjct: 577 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKI- 635
Query: 618 YKDEISGYK-NPKP 630
+ ++ YK P+P
Sbjct: 636 HLEKYPNYKYKPRP 649
>RGD|1309000 [details] [associations]
symbol:Sox6 "SRY (sex determining region Y)-box 6" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000902 "cell morphogenesis" evidence=ISO] [GO:0001701 "in
utero embryonic development" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0009791 "post-embryonic
development" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016458 "gene silencing"
evidence=ISO] [GO:0021778 "oligodendrocyte cell fate specification"
evidence=ISO] [GO:0030097 "hemopoiesis" evidence=ISO] [GO:0030218
"erythrocyte differentiation" evidence=ISO] [GO:0032332 "positive
regulation of chondrocyte differentiation" evidence=ISO]
[GO:0035051 "cardiocyte differentiation" evidence=ISO] [GO:0042692
"muscle cell differentiation" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045165 "cell fate commitment" evidence=ISO] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0048708 "astrocyte
differentiation" evidence=IMP] [GO:0048709 "oligodendrocyte
differentiation" evidence=ISO] [GO:0048821 "erythrocyte
development" evidence=ISO] [GO:0051216 "cartilage development"
evidence=ISO] [GO:0061036 "positive regulation of cartilage
development" evidence=ISO] [GO:0071560 "cellular response to
transforming growth factor beta stimulus" evidence=ISO] [GO:2000741
"positive regulation of mesenchymal stem cell differentiation"
evidence=ISO] InterPro:IPR009071 InterPro:IPR027153 Pfam:PF00505
RGD:1309000 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0048708 HOVERGEN:HBG003915 KO:K09269
HOGENOM:HOG000056455 eggNOG:NOG253815 CTD:55553
PANTHER:PTHR10270:SF89 IPI:IPI00371181 EMBL:BC097403
RefSeq:NP_001019922.1 UniGene:Rn.76073 ProteinModelPortal:Q4V8G3
SMR:Q4V8G3 STRING:Q4V8G3 GeneID:293165 KEGG:rno:293165
UCSC:RGD:1309000 NextBio:635493 Genevestigator:Q4V8G3
Uniprot:Q4V8G3
Length = 787
Score = 124 (48.7 bits), Expect = 0.00040, P = 0.00040
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + +++ ++LG RWK MS +E++PY E +AR K
Sbjct: 581 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKI- 639
Query: 618 YKDEISGYK-NPKP 630
+ ++ YK P+P
Sbjct: 640 HLEKYPNYKYKPRP 653
>UNIPROTKB|F6UQM4 [details] [associations]
symbol:SOX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR027153
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00690000101789 OMA:FENLGPQ
PANTHER:PTHR10270:SF89 Ensembl:ENSCAFT00000013736 EMBL:AAEX03012946
EMBL:AAEX03012947 EMBL:AAEX03012948 Uniprot:F6UQM4
Length = 793
Score = 124 (48.7 bits), Expect = 0.00040, P = 0.00040
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + +++ ++LG RWK MS +E++PY E +AR K
Sbjct: 587 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKI- 645
Query: 618 YKDEISGYK-NPKP 630
+ ++ YK P+P
Sbjct: 646 HLEKYPNYKYKPRP 659
>MGI|MGI:98368 [details] [associations]
symbol:Sox6 "SRY-box containing gene 6" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP;IDA] [GO:0000902 "cell
morphogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IGI;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005667
"transcription factor complex" evidence=IC] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0016458 "gene
silencing" evidence=IMP] [GO:0021778 "oligodendrocyte cell fate
specification" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0030218 "erythrocyte differentiation"
evidence=IMP] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=ISO;IDA] [GO:0035051 "cardiocyte
differentiation" evidence=IDA] [GO:0042692 "muscle cell
differentiation" evidence=IDA] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] [GO:0044212 "transcription regulatory region
DNA binding" evidence=IDA] [GO:0045165 "cell fate commitment"
evidence=IGI] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0048708 "astrocyte differentiation" evidence=ISO]
[GO:0048709 "oligodendrocyte differentiation" evidence=IMP]
[GO:0048821 "erythrocyte development" evidence=IMP] [GO:0051216
"cartilage development" evidence=IGI] [GO:0061036 "positive
regulation of cartilage development" evidence=ISO] [GO:0071560
"cellular response to transforming growth factor beta stimulus"
evidence=ISO] [GO:2000741 "positive regulation of mesenchymal stem
cell differentiation" evidence=ISO] InterPro:IPR009071
InterPro:IPR027153 MGI:MGI:98368 Pfam:PF00505 GO:GO:0071560
GO:GO:0043565 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0005667 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0042692 GO:GO:0009791 GO:GO:0000902 GO:GO:0032332
GO:GO:0051216 GO:GO:0048821 GO:GO:0016458 GO:GO:0035051
GO:GO:0061036 GO:GO:0021778 HOVERGEN:HBG003915 KO:K09269
HOGENOM:HOG000056455 eggNOG:NOG253815 GO:GO:2000741 CTD:55553
OMA:FENLGPQ ChiTaRS:SOX6 PANTHER:PTHR10270:SF89 EMBL:U32614
EMBL:D61689 EMBL:AJ010605 EMBL:X65659 IPI:IPI00620986
IPI:IPI00623688 PIR:S22944 PIR:S59121 RefSeq:NP_035575.1
UniGene:Mm.323365 ProteinModelPortal:P40645 SMR:P40645
IntAct:P40645 STRING:P40645 PhosphoSite:P40645 PRIDE:P40645
Ensembl:ENSMUST00000072804 Ensembl:ENSMUST00000166207 GeneID:20679
KEGG:mmu:20679 UCSC:uc009jin.1 InParanoid:P40645 OrthoDB:EOG4N8R45
NextBio:299177 Bgee:P40645 CleanEx:MM_SOX6 Genevestigator:P40645
GermOnline:ENSMUSG00000051910 Uniprot:P40645
Length = 827
Score = 124 (48.7 bits), Expect = 0.00042, P = 0.00042
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + +++ ++LG RWK MS +E++PY E +AR K
Sbjct: 621 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKI- 679
Query: 618 YKDEISGYK-NPKP 630
+ ++ YK P+P
Sbjct: 680 HLEKYPNYKYKPRP 693
>UNIPROTKB|P35712 [details] [associations]
symbol:SOX6 "Transcription factor SOX-6" species:9606 "Homo
sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0016458 "gene silencing" evidence=IEA]
[GO:0021778 "oligodendrocyte cell fate specification" evidence=IEA]
[GO:0035051 "cardiocyte differentiation" evidence=IEA] [GO:0042692
"muscle cell differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0048821 "erythrocyte
development" evidence=IEA] [GO:0051216 "cartilage development"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0007517 "muscle
organ development" evidence=NAS] [GO:0003677 "DNA binding"
evidence=NAS] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=IDA] [GO:0061036 "positive regulation of
cartilage development" evidence=IDA] [GO:0071560 "cellular response
to transforming growth factor beta stimulus" evidence=IDA]
[GO:2000741 "positive regulation of mesenchymal stem cell
differentiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR009071 InterPro:IPR027153 Pfam:PF00505
GO:GO:0005634 EMBL:CH471064 GO:GO:0071560 GO:GO:0003677
GO:GO:0043565 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0042692
GO:GO:0009791 GO:GO:0007517 GO:GO:0000902 GO:GO:0032332
GO:GO:0051216 GO:GO:0048821 GO:GO:0016458 GO:GO:0035051
GO:GO:0061036 GO:GO:0021778 HOVERGEN:HBG003915 KO:K09269
HOGENOM:HOG000056455 eggNOG:NOG253815 GO:GO:2000741 EMBL:AF309034
EMBL:AF309476 EMBL:AF309471 EMBL:AF309472 EMBL:AF309473
EMBL:AF309474 EMBL:AF309475 EMBL:AL136780 EMBL:AC009869
EMBL:AC013595 EMBL:AC027016 EMBL:AC068405 EMBL:AC103794
EMBL:BC037866 EMBL:BC047064 EMBL:X65663 IPI:IPI00218631
IPI:IPI00641980 IPI:IPI00872738 IPI:IPI00926649
RefSeq:NP_001139283.1 RefSeq:NP_001139291.1 RefSeq:NP_059978.1
RefSeq:NP_201583.2 UniGene:Hs.368226 ProteinModelPortal:P35712
SMR:P35712 IntAct:P35712 STRING:P35712 PhosphoSite:P35712
DMDM:215274178 PaxDb:P35712 PRIDE:P35712 DNASU:55553
Ensembl:ENST00000316399 Ensembl:ENST00000352083
Ensembl:ENST00000396356 Ensembl:ENST00000527619
Ensembl:ENST00000528252 Ensembl:ENST00000528429 GeneID:55553
KEGG:hsa:55553 UCSC:uc001mmd.3 UCSC:uc001mme.3 UCSC:uc001mmf.3
UCSC:uc001mmg.3 CTD:55553 GeneCards:GC11M015949 HGNC:HGNC:16421
HPA:HPA001923 HPA:HPA003908 MIM:607257 neXtProt:NX_P35712
PharmGKB:PA38137 InParanoid:P35712 OMA:FENLGPQ ChiTaRS:SOX6
GenomeRNAi:55553 NextBio:60012 ArrayExpress:P35712 Bgee:P35712
CleanEx:HS_SOX6 Genevestigator:P35712 GermOnline:ENSG00000110693
PANTHER:PTHR10270:SF89 Uniprot:P35712
Length = 828
Score = 124 (48.7 bits), Expect = 0.00042, P = 0.00042
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + +++ ++LG RWK MS +E++PY E +AR K
Sbjct: 622 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKI- 680
Query: 618 YKDEISGYK-NPKP 630
+ ++ YK P+P
Sbjct: 681 HLEKYPNYKYKPRP 694
>UNIPROTKB|E2QTS7 [details] [associations]
symbol:SOX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR027153
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 PANTHER:PTHR10270:SF89 Ensembl:ENSCAFT00000013736
Uniprot:E2QTS7
Length = 829
Score = 124 (48.7 bits), Expect = 0.00043, P = 0.00043
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + +++ ++LG RWK MS +E++PY E +AR K
Sbjct: 623 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKI- 681
Query: 618 YKDEISGYK-NPKP 630
+ ++ YK P+P
Sbjct: 682 HLEKYPNYKYKPRP 695
>UNIPROTKB|E1BE01 [details] [associations]
symbol:SOX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000741 "positive regulation of mesenchymal stem cell
differentiation" evidence=IEA] [GO:0071560 "cellular response to
transforming growth factor beta stimulus" evidence=IEA] [GO:0061036
"positive regulation of cartilage development" evidence=IEA]
[GO:0051216 "cartilage development" evidence=IEA] [GO:0048821
"erythrocyte development" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0035051 "cardiocyte differentiation"
evidence=IEA] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=IEA] [GO:0021778 "oligodendrocyte cell
fate specification" evidence=IEA] [GO:0016458 "gene silencing"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000902 "cell morphogenesis" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR009071
InterPro:IPR027153 Pfam:PF00505 GO:GO:0005634 GO:GO:0071560
GO:GO:0043565 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0042692 GO:GO:0009791
GO:GO:0000902 GO:GO:0032332 GO:GO:0051216 GO:GO:0048821
GO:GO:0016458 GO:GO:0035051 GO:GO:0061036 GO:GO:0021778
GeneTree:ENSGT00690000101789 KO:K09269 GO:GO:2000741 CTD:55553
OMA:FENLGPQ PANTHER:PTHR10270:SF89 EMBL:DAAA02040602
EMBL:DAAA02040603 EMBL:DAAA02040604 EMBL:DAAA02040605
EMBL:DAAA02040606 EMBL:DAAA02040607 EMBL:DAAA02040608
EMBL:DAAA02040609 EMBL:DAAA02040610 EMBL:DAAA02040611
EMBL:DAAA02040612 IPI:IPI01000762 RefSeq:NP_001178347.1
UniGene:Bt.62052 Ensembl:ENSBTAT00000061473 GeneID:534321
KEGG:bta:534321 NextBio:20876354 Uniprot:E1BE01
Length = 841
Score = 124 (48.7 bits), Expect = 0.00043, P = 0.00043
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + +++ ++LG RWK MS +E++PY E +AR K
Sbjct: 635 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKI- 693
Query: 618 YKDEISGYK-NPKP 630
+ ++ YK P+P
Sbjct: 694 HLEKYPNYKYKPRP 707
>RGD|1304726 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565
"nBAF complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1304726
GO:GO:0005634 GO:GO:0007399 GO:GO:0003677 GO:GO:0016568
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
UniGene:Rn.10829 HOVERGEN:HBG054558 KO:K11651 EMBL:BC091314
EMBL:BC092210 EMBL:EU327027 EMBL:EU327028 EMBL:EU327029
EMBL:EU327030 EMBL:EU327031 IPI:IPI00370983 RefSeq:NP_001020164.1
UniGene:Rn.8513 ProteinModelPortal:Q56A18 STRING:Q56A18
GeneID:303518 KEGG:rno:303518 InParanoid:Q56A18 NextBio:651503
Genevestigator:Q56A18 Uniprot:Q56A18
Length = 376
Score = 119 (46.9 bits), Expect = 0.00048, P = 0.00048
Identities = 18/73 (24%), Positives = 42/73 (57%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P P + + ++ +S+ + +K SNP + ++G+++G W+ ++ EE++ Y ++ A+
Sbjct: 28 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 87
Query: 615 KKRYKDEISGYKN 627
K Y + + Y N
Sbjct: 88 KIEYNESMKAYHN 100
>UNIPROTKB|F1RQF2 [details] [associations]
symbol:SOX30 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0031960 "response to corticosteroid stimulus" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0000981
"sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0007283 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000981 GO:GO:0031960
OMA:VPQLDIG GeneTree:ENSGT00670000098123 EMBL:CU570950
Ensembl:ENSSSCT00000018564 Uniprot:F1RQF2
Length = 764
Score = 123 (48.4 bits), Expect = 0.00049, P = 0.00049
Identities = 22/73 (30%), Positives = 45/73 (61%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRY 618
KR M+ F+ ++++ R + K+NP ++ LG W K+S E+++PY +A+ K+++
Sbjct: 349 KRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKH 408
Query: 619 KDEISGYK-NPKP 630
++E G+ P+P
Sbjct: 409 REEFPGWVYQPRP 421
>UNIPROTKB|Q29RR8 [details] [associations]
symbol:SOX30 "SRY (Sex determining region Y)-box 30"
species:9913 "Bos taurus" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0031960 "response to corticosteroid
stimulus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0000981 "sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0043565 GO:GO:0007283 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000981
GO:GO:0031960 KO:K09271 CTD:11063 eggNOG:NOG329829
HOGENOM:HOG000070158 HOVERGEN:HBG057980 OMA:VPQLDIG
OrthoDB:EOG4CVG6C GeneTree:ENSGT00670000098123 EMBL:DAAA02020795
EMBL:DAAA02020796 EMBL:BC114054 IPI:IPI00687049
RefSeq:NP_001039894.1 UniGene:Bt.50786 Ensembl:ENSBTAT00000027304
GeneID:538232 KEGG:bta:538232 InParanoid:Q29RR8 NextBio:20877312
Uniprot:Q29RR8
Length = 766
Score = 123 (48.4 bits), Expect = 0.00050, P = 0.00049
Identities = 22/73 (30%), Positives = 45/73 (61%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRY 618
KR M+ F+ ++++ R + K+NP ++ LG W K+S E+++PY +A+ K+++
Sbjct: 352 KRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKH 411
Query: 619 KDEISGYK-NPKP 630
++E G+ P+P
Sbjct: 412 REEFPGWVYQPRP 424
>MGI|MGI:1341157 [details] [associations]
symbol:Sox30 "SRY-box containing gene 30" species:10090 "Mus
musculus" [GO:0000981 "sequence-specific DNA binding RNA polymerase
II transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR009071
MGI:MGI:1341157 Pfam:PF00505 GO:GO:0005634 GO:GO:0043565
GO:GO:0007283 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000981 GO:GO:0031960 KO:K09271 CTD:11063
eggNOG:NOG329829 HOGENOM:HOG000070158 HOVERGEN:HBG057980
OMA:VPQLDIG OrthoDB:EOG4CVG6C EMBL:AY005801 IPI:IPI00229589
RefSeq:NP_775560.1 UniGene:Mm.66708 ProteinModelPortal:Q8CGW4
SMR:Q8CGW4 PhosphoSite:Q8CGW4 PaxDb:Q8CGW4 PRIDE:Q8CGW4
DNASU:214105 Ensembl:ENSMUST00000049038 GeneID:214105
KEGG:mmu:214105 GeneTree:ENSGT00670000098123 InParanoid:Q8CGW4
NextBio:374182 Bgee:Q8CGW4 CleanEx:MM_SOX30 Genevestigator:Q8CGW4
GermOnline:ENSMUSG00000040489 Uniprot:Q8CGW4
Length = 782
Score = 123 (48.4 bits), Expect = 0.00051, P = 0.00051
Identities = 22/73 (30%), Positives = 45/73 (61%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRY 618
KR M+ F+ ++++ R + K+NP ++ LG W K+S E+++PY +A+ K+++
Sbjct: 367 KRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKH 426
Query: 619 KDEISGYK-NPKP 630
++E G+ P+P
Sbjct: 427 REEFPGWVYQPRP 439
>UNIPROTKB|A4FUB3 [details] [associations]
symbol:SOX5 "SOX5 protein" species:9913 "Bos taurus"
[GO:2000741 "positive regulation of mesenchymal stem cell
differentiation" evidence=IEA] [GO:0071560 "cellular response to
transforming growth factor beta stimulus" evidence=IEA] [GO:0061036
"positive regulation of cartilage development" evidence=IEA]
[GO:0060164 "regulation of timing of neuron differentiation"
evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
[GO:0048709 "oligodendrocyte differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045165 "cell fate commitment" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0032332 "positive regulation of chondrocyte differentiation"
evidence=IEA] [GO:0021953 "central nervous system neuron
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0045892 GO:GO:0071560 GO:GO:0001701
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212 GO:GO:0032332
GO:GO:0051216 GO:GO:0048709 GO:GO:0045165 GO:GO:0061036
GO:GO:0060164 GO:GO:0021953 GeneTree:ENSGT00690000101789
HOVERGEN:HBG003915 KO:K09269 HOGENOM:HOG000056455 CTD:6660
eggNOG:NOG253815 OMA:PSEHSSM OrthoDB:EOG42BX84 GO:GO:2000741
EMBL:DAAA02014069 EMBL:DAAA02014070 EMBL:DAAA02014071
EMBL:DAAA02014072 EMBL:DAAA02014073 EMBL:DAAA02014074 EMBL:BC114658
IPI:IPI00704971 RefSeq:NP_001076940.1 UniGene:Bt.32918 SMR:A4FUB3
STRING:A4FUB3 Ensembl:ENSBTAT00000030260 GeneID:533829
KEGG:bta:533829 InParanoid:A4FUB3 NextBio:20876164 Uniprot:A4FUB3
Length = 728
Score = 119 (46.9 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 556 NAP--KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKAR 612
N P KR M+ F+ +++ ER I ++ P + +++ ++LG RWK M+ E++PY E +AR
Sbjct: 517 NEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQAR 576
Query: 613 ADKKRYKDEISGYK-NPKP 630
K+ + ++ YK P+P
Sbjct: 577 LSKQ-HLEKYPDYKYKPRP 594
Score = 50 (22.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 85 LTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGK 144
+++F N SP++ + GR GE L+ L G + + SLADV T Q K
Sbjct: 63 MSSFAPHNSSTSPQKAE--EGGRQSGE-SLSSTTL----GTPERRKGSLADVVDTLKQRK 115
Query: 145 NDVILEFHVDDT 156
+ +++ ++T
Sbjct: 116 MEELIKNEPEET 127
>ZFIN|ZDB-GENE-011026-1 [details] [associations]
symbol:sox32 "SRY-box containing gene 32"
species:7955 "Danio rerio" [GO:0001706 "endoderm formation"
evidence=IDA;IMP] [GO:0003007 "heart morphogenesis" evidence=IMP]
[GO:0007498 "mesoderm development" evidence=IDA] [GO:0001885
"endothelial cell development" evidence=IMP] [GO:0035050 "embryonic
heart tube development" evidence=IMP] [GO:0007368 "determination of
left/right symmetry" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IGI;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=IGI;IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0007492
"endoderm development" evidence=IMP] [GO:0007493 "endodermal cell
fate determination" evidence=IMP] [GO:0042074 "cell migration
involved in gastrulation" evidence=IMP] [GO:0003262 "endocardial
progenitor cell migration to the midline involved in heart field
formation" evidence=IMP] [GO:0061035 "regulation of cartilage
development" evidence=IGI;IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] InterPro:IPR009071 Pfam:PF00505
ZFIN:ZDB-GENE-011026-1 GO:GO:0005634 GO:GO:0045893 GO:GO:0007498
GO:GO:0003677 GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007368 GO:GO:0042074
GO:GO:0001885 GO:GO:0035050 GO:GO:0007493 GO:GO:0061035 HSSP:P48432
GO:GO:0003262 EMBL:BC097087 EMBL:AF362749 IPI:IPI00494054
RefSeq:NP_571926.1 UniGene:Dr.133216 SMR:Q90Z46 STRING:Q90Z46
GeneID:116990 KEGG:dre:116990 CTD:116990 HOVERGEN:HBG098276
InParanoid:Q90Z46 NextBio:20796959 Uniprot:Q90Z46
Length = 307
Score = 117 (46.2 bits), Expect = 0.00054, P = 0.00054
Identities = 20/68 (29%), Positives = 41/68 (60%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRY 618
+R ++ FI +++ ER + + NP + TD+ ++LG+ WK MS+ ++ PY +A + ++
Sbjct: 71 RRPLNAFIIWTKEERRRLAQLNPDLENTDLSKILGKTWKAMSLADKRPYMQEAERLRIQH 130
Query: 619 KDEISGYK 626
+ YK
Sbjct: 131 TIDYPNYK 138
>UNIPROTKB|F1M4J9 [details] [associations]
symbol:F1M4J9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00562835
Ensembl:ENSRNOT00000051890 Uniprot:F1M4J9
Length = 196
Score = 112 (44.5 bits), Expect = 0.00055, P = 0.00055
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 558 PKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKARADK 615
P+ MS + FF Q + KK P ++ F++ + ERWK MS +E+ +E+ +ADK
Sbjct: 9 PRGKMSSYAFFVQACWKEHKKKQPDVSVNFSEFSKKCSERWKTMSTKEKGKFENIGKADK 68
Query: 616 KRYKDEISGYKNP 628
Y+ + +K+P
Sbjct: 69 AHYETK-KKFKDP 80
>UNIPROTKB|O94993 [details] [associations]
symbol:SOX30 "Transcription factor SOX-30" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000981
"sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IDA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0031960 "response to corticosteroid stimulus" evidence=IEP]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0006355 GO:GO:0043565 GO:GO:0007283 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000981 GO:GO:0031960 KO:K09271 EMBL:AB022083 EMBL:AB022441
EMBL:BC033492 IPI:IPI00016680 IPI:IPI00220989 RefSeq:NP_008948.1
RefSeq:NP_848511.1 UniGene:Hs.529462 ProteinModelPortal:O94993
SMR:O94993 IntAct:O94993 MINT:MINT-1439929 STRING:O94993
PhosphoSite:O94993 PaxDb:O94993 PRIDE:O94993 DNASU:11063
Ensembl:ENST00000265007 Ensembl:ENST00000311371 GeneID:11063
KEGG:hsa:11063 UCSC:uc003lxb.1 UCSC:uc003lxc.1 CTD:11063
GeneCards:GC05M157053 H-InvDB:HIX0005360 HGNC:HGNC:30635
HPA:CAB009382 HPA:HPA006159 MIM:606698 neXtProt:NX_O94993
PharmGKB:PA134876614 eggNOG:NOG329829 HOGENOM:HOG000070158
HOVERGEN:HBG057980 InParanoid:O94993 OMA:VPQLDIG OrthoDB:EOG4CVG6C
PhylomeDB:O94993 ChiTaRS:SOX30 GenomeRNAi:11063 NextBio:42041
ArrayExpress:O94993 Bgee:O94993 CleanEx:HS_SOX30
Genevestigator:O94993 GermOnline:ENSG00000039600 Uniprot:O94993
Length = 753
Score = 123 (48.4 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 22/73 (30%), Positives = 45/73 (61%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRY 618
KR M+ F+ ++++ R + K+NP ++ LG W K+S E+++PY +A+ K+++
Sbjct: 338 KRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKH 397
Query: 619 KDEISGYK-NPKP 630
++E G+ P+P
Sbjct: 398 REEFPGWVYQPRP 410
Score = 46 (21.3 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 52/187 (27%), Positives = 76/187 (40%)
Query: 179 FVGDENHP--PAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQ 236
F GDE +V RD + GAG A + EG+ I T E L RL
Sbjct: 178 FRGDEKGKLEAEEVMRDSMQG----GAGKSPAAIR-EGV-IKTEEP----ERLLEDCRLG 227
Query: 237 GQANDFKIQYSSVVRLFLLPKSNQ--PHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQ 294
+ + + S + L P S PH L P+ T+ P +QF+
Sbjct: 228 AEPASNGLVHGSA-EVILAPTSGAFGPHQ---QDLRIPLTL-HTVPPGARIQFQG--APP 280
Query: 295 SELLMSEEL----LNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSAQDGYA 350
SEL+ ++ + TK + LEPS K +V T+L +G T P F ++G+
Sbjct: 281 SELIRLTKVPLTPVPTKMQSLLEPSVKIETKDVPLTVLPSDAGIPDT-P--FSKDRNGH- 336
Query: 351 VKSSLKA 357
VK + A
Sbjct: 337 VKRPMNA 343
>UNIPROTKB|P40647 [details] [associations]
symbol:sox5 "Transcription factor Sox-5" species:8355
"Xenopus laevis" [GO:0090263 "positive regulation of canonical Wnt
receptor signaling pathway" evidence=IDA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0090263 HOVERGEN:HBG003915 KO:K09269 CTD:6660
EMBL:BC142559 EMBL:DR718509 EMBL:X65653 PIR:S22949
RefSeq:NP_001167508.1 UniGene:Xl.21446 UniGene:Xl.85854
GeneID:100381154 KEGG:xla:100381154 Xenbase:XB-GENE-865667
Uniprot:P40647
Length = 757
Score = 120 (47.3 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 556 NAP--KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKAR 612
N P KR M+ F+ +++ ER I ++ P + +++ ++LG RWK M+ E++PY E +AR
Sbjct: 555 NEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNLEKQPYYEEQAR 614
Query: 613 ADKKRYKDEISGYK-NPKP 630
K+ + ++ YK P+P
Sbjct: 615 LSKQ-HLEKYPDYKYKPRP 632
Score = 49 (22.3 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 81 DVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQ 140
D ++ F N SP + + V GR G+ L+ +ML G + + SLADV T
Sbjct: 93 DCNKMSAFALHNVATSPMKAE-EV-GRQSGD-SLSNSML----GTPERRKGSLADVVDTL 145
Query: 141 LQGKNDVILEFHVDDT 156
Q K + +++ ++T
Sbjct: 146 KQRKMEELIKSEPEET 161
>MGI|MGI:2181659 [details] [associations]
symbol:Tox "thymocyte selection-associated high mobility
group box" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:2181659 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
HOGENOM:HOG000230949 HOVERGEN:HBG051183 eggNOG:NOG284736 CTD:9760
OMA:CRNPPAQ OrthoDB:EOG44XJGQ EMBL:AF472514 EMBL:AK029694
EMBL:AK038671 EMBL:AK051947 EMBL:BC080732 IPI:IPI00471452
IPI:IPI00754510 RefSeq:NP_663757.3 UniGene:Mm.435828
UniGene:Mm.488241 PDB:2CO9 PDBsum:2CO9 ProteinModelPortal:Q66JW3
SMR:Q66JW3 PhosphoSite:Q66JW3 PaxDb:Q66JW3 PRIDE:Q66JW3
Ensembl:ENSMUST00000039987 GeneID:252838 KEGG:mmu:252838
UCSC:uc008rxt.1 InParanoid:Q66JW3 ChiTaRS:TOX
EvolutionaryTrace:Q66JW3 NextBio:387345 Bgee:Q66JW3
Genevestigator:Q66JW3 GermOnline:ENSMUSG00000041272 Uniprot:Q66JW3
Length = 526
Score = 121 (47.7 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 258 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAA 317
Query: 615 KKRYKDEISGYK 626
KK Y +++ Y+
Sbjct: 318 KKEYLKQLAAYR 329
Score = 46 (21.3 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 23/120 (19%), Positives = 52/120 (43%)
Query: 150 EFHVDDTTGANEKD-SLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGAG---G 205
+F++ T + D SL+ ++ + + NH F + M + ++ G
Sbjct: 67 DFNIPPITPPSLPDHSLVHLN-EVESGYHSLCHPMNHNGLLPFHPQTMDLPEITVSNMLG 125
Query: 206 EEAVVTFEGIAILTPRG-----RYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQ 260
++ + I+++ G +YS ++ +R +GQ D + Q +S+++ L NQ
Sbjct: 126 QDGALLSNSISVMQEIGNAEGAQYSSHPQMAAMRPRGQPTDIR-QQASMMQPGQLTTINQ 184
Score = 37 (18.1 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 623 SGYKNPKPMDID 634
SG +NP P +D
Sbjct: 495 SGCRNPPPQPVD 506
>UNIPROTKB|P35711 [details] [associations]
symbol:SOX5 "Transcription factor SOX-5" species:9606 "Homo
sapiens" [GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0021953 "central nervous system neuron
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045165 "cell fate
commitment" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0048709 "oligodendrocyte differentiation"
evidence=IEA] [GO:0051216 "cartilage development" evidence=IEA]
[GO:0060164 "regulation of timing of neuron differentiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0032332
"positive regulation of chondrocyte differentiation" evidence=IDA]
[GO:0061036 "positive regulation of cartilage development"
evidence=IDA] [GO:0071560 "cellular response to transforming growth
factor beta stimulus" evidence=IDA] [GO:2000741 "positive
regulation of mesenchymal stem cell differentiation" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0045892
GO:GO:0071560 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0006366 GO:GO:0032332 GO:GO:0051216
GO:GO:0048709 GO:GO:0045165 GO:GO:0061036 GO:GO:0060164
GO:GO:0021953 HOVERGEN:HBG003915 KO:K09269 EMBL:AB081588
EMBL:AB081589 EMBL:AB081590 EMBL:AB081591 EMBL:AK074317
EMBL:AK098610 EMBL:AK303970 EMBL:AC087244 EMBL:AC087260
EMBL:AC087319 EMBL:AC092864 EMBL:BC029220 EMBL:BC035227
EMBL:BC047665 EMBL:BC060773 EMBL:S83308 EMBL:X65662 IPI:IPI00166143
IPI:IPI00171247 IPI:IPI00216317 IPI:IPI00221270 IPI:IPI01010805
PIR:S22939 RefSeq:NP_001248343.1 RefSeq:NP_001248344.1
RefSeq:NP_008871.3 RefSeq:NP_694534.1 RefSeq:NP_821078.1
UniGene:Hs.657542 ProteinModelPortal:P35711 SMR:P35711
IntAct:P35711 MINT:MINT-1198407 STRING:P35711 PhosphoSite:P35711
DMDM:30179883 PRIDE:P35711 DNASU:6660 Ensembl:ENST00000309359
Ensembl:ENST00000381381 Ensembl:ENST00000396007
Ensembl:ENST00000451604 Ensembl:ENST00000541536
Ensembl:ENST00000545921 Ensembl:ENST00000546136 GeneID:6660
KEGG:hsa:6660 UCSC:uc001rfv.3 UCSC:uc001rfw.3 UCSC:uc001rfy.3
CTD:6660 GeneCards:GC12M023585 HGNC:HGNC:11201 MIM:604975
neXtProt:NX_P35711 PharmGKB:PA36038 eggNOG:NOG253815
InParanoid:P35711 OMA:PSEHSSM OrthoDB:EOG42BX84 PhylomeDB:P35711
ChiTaRS:SOX5 GenomeRNAi:6660 NextBio:25963 ArrayExpress:P35711
Bgee:P35711 Genevestigator:P35711 GermOnline:ENSG00000134532
GO:GO:2000741 Uniprot:P35711
Length = 763
Score = 119 (46.9 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 556 NAP--KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKAR 612
N P KR M+ F+ +++ ER I ++ P + +++ ++LG RWK M+ E++PY E +AR
Sbjct: 552 NEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQAR 611
Query: 613 ADKKRYKDEISGYK-NPKP 630
K+ + ++ YK P+P
Sbjct: 612 LSKQ-HLEKYPDYKYKPRP 629
Score = 50 (22.7 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 85 LTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGK 144
+++F N SP++ + GR GE L+ L G + + SLADV T Q K
Sbjct: 98 MSSFAPHNSSTSPQKAE--EGGRQSGE-SLSSTAL----GTPERRKGSLADVVDTLKQRK 150
Query: 145 NDVILEFHVDDT 156
+ +++ ++T
Sbjct: 151 MEELIKNEPEET 162
>UNIPROTKB|F1LY72 [details] [associations]
symbol:F1LY72 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00568202 Ensembl:ENSRNOT00000048758 Uniprot:F1LY72
Length = 203
Score = 112 (44.5 bits), Expect = 0.00064, P = 0.00064
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 558 PKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKARADK 615
P+ MS + FF Q + KK P ++ F++ + ERWK MS +E+ +E+ +ADK
Sbjct: 9 PRGKMSSYAFFVQACWKEHKKKQPDVSVNFSEFSKKCSERWKTMSTKEKGKFENIGKADK 68
Query: 616 KRYKDEISGYKNP 628
Y+ + +K+P
Sbjct: 69 AHYETK-KKFKDP 80
>UNIPROTKB|F1LZG8 [details] [associations]
symbol:F1LZG8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00560402
Ensembl:ENSRNOT00000043102 Uniprot:F1LZG8
Length = 203
Score = 112 (44.5 bits), Expect = 0.00064, P = 0.00064
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 558 PKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKARADK 615
P+ MS + FF Q + KK P ++ F++ + ERWK MS +E+ +E+ +ADK
Sbjct: 9 PRGKMSSYAFFVQACWKEHKKKQPDVSVNFSEFSKKCSERWKTMSTKEKGKFENIGKADK 68
Query: 616 KRYKDEISGYKNP 628
Y+ + +K+P
Sbjct: 69 AHYETK-KKFKDP 80
>FB|FBgn0038978 [details] [associations]
symbol:CG7045 species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0000785 "chromatin" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 EMBL:AE014297 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 HSSP:Q05783 OrthoDB:EOG4MCVGR
RefSeq:NP_651055.1 UniGene:Dm.1280 ProteinModelPortal:Q9VCZ5
SMR:Q9VCZ5 MINT:MINT-1649734 STRING:Q9VCZ5 PRIDE:Q9VCZ5
EnsemblMetazoa:FBtr0084258 GeneID:42650 KEGG:dme:Dmel_CG7045
UCSC:CG7045-RA FlyBase:FBgn0038978 InParanoid:Q9VCZ5
PhylomeDB:Q9VCZ5 GenomeRNAi:42650 NextBio:829878
ArrayExpress:Q9VCZ5 Bgee:Q9VCZ5 Uniprot:Q9VCZ5
Length = 126
Score = 96 (38.9 bits), Expect = 0.00065, P = 0.00065
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 558 PKRAMSGF-IFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKK 616
PK+ MS F ++ + R++IK +P + +V GE W+ M+ E++ ++ A
Sbjct: 8 PKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMA 67
Query: 617 RYKDEISGYKNPK 629
YK+++ + PK
Sbjct: 68 EYKEKLKQWNFPK 80
>UNIPROTKB|F1S3U8 [details] [associations]
symbol:SOX13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043565 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
OMA:TMVNCTV EMBL:CU972366 Ensembl:ENSSSCT00000016646 Uniprot:F1S3U8
Length = 545
Score = 120 (47.3 bits), Expect = 0.00066, P = 0.00066
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + + + ++LG RWK M+ +E++PY E +AR ++
Sbjct: 442 KRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQ- 500
Query: 618 YKDEISGYK-NPKP 630
+ ++ YK P+P
Sbjct: 501 HLEKYPDYKYKPRP 514
>FB|FBgn0005612 [details] [associations]
symbol:Sox14 "Sox box protein 14" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=ISS;IMP;NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0016322 "neuron remodeling" evidence=IGI]
[GO:0048813 "dendrite morphogenesis" evidence=IGI] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0007552 "metamorphosis" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 EMBL:AE013599 GO:GO:0005634
GO:GO:0043565 GO:GO:0016322 GO:GO:0006357 GO:GO:0006351
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0048813 GO:GO:0007552 eggNOG:NOG130659
GeneTree:ENSGT00690000101789 CTD:8403 EMBL:AJ252125 EMBL:X65667
PIR:S22935 RefSeq:NP_476894.1 RefSeq:NP_599117.1 UniGene:Dm.760
ProteinModelPortal:P40656 SMR:P40656 IntAct:P40656 MINT:MINT-791196
STRING:P40656 EnsemblMetazoa:FBtr0072157 EnsemblMetazoa:FBtr0072158
GeneID:37822 KEGG:dme:Dmel_CG3090 FlyBase:FBgn0005612
InParanoid:P40656 OMA:NDANLHS OrthoDB:EOG4ZGMVV PhylomeDB:P40656
GenomeRNAi:37822 NextBio:805561 Bgee:P40656 GermOnline:CG3090
Uniprot:P40656
Length = 669
Score = 121 (47.7 bits), Expect = 0.00068, P = 0.00068
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
P KR M+ F+ +SQMER I + P + ++ + LG RW+ +S ++++PY +A
Sbjct: 184 PGHIKRPMNAFMVWSQMERRKICERTPDLHNAEISKELGRRWQLLSKDDKQPYIIEAEKL 243
Query: 615 KKRYKDEISGYK 626
+K + E YK
Sbjct: 244 RKLHMIEYPNYK 255
>MGI|MGI:98361 [details] [associations]
symbol:Sox13 "SRY-box containing gene 13" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] InterPro:IPR009071 MGI:MGI:98361
Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0043565
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00690000101789 CTD:9580
eggNOG:NOG275089 HOVERGEN:HBG003915 KO:K09269 OMA:TMVNCTV
EMBL:BC007130 EMBL:AB006329 EMBL:AJ000740 EMBL:Z18962
IPI:IPI00228353 PIR:JC6550 PIR:S30241 RefSeq:NP_035569.2
UniGene:Mm.8575 ProteinModelPortal:Q04891 SMR:Q04891 STRING:Q04891
PhosphoSite:Q04891 PRIDE:Q04891 Ensembl:ENSMUST00000094551
Ensembl:ENSMUST00000153799 GeneID:20668 KEGG:mmu:20668
UCSC:uc007cqk.1 HOGENOM:HOG000056455 InParanoid:Q04891
NextBio:299137 Bgee:Q04891 CleanEx:MM_SOX13 Genevestigator:Q04891
GermOnline:ENSMUSG00000070643 Uniprot:Q04891
Length = 613
Score = 120 (47.3 bits), Expect = 0.00078, P = 0.00078
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + + + ++LG RWK M+ +E++PY E +AR ++
Sbjct: 417 KRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQ- 475
Query: 618 YKDEISGYK-NPKP 630
+ ++ YK P+P
Sbjct: 476 HLEKYPDYKYKPRP 489
>RGD|1309674 [details] [associations]
symbol:Sox13 "SRY (sex determining region Y)-box 13"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;ISO] InterPro:IPR009071 Pfam:PF00505 RGD:1309674
GO:GO:0005634 GO:GO:0043565 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
OrthoDB:EOG40S0F9 IPI:IPI00869801 Ensembl:ENSRNOT00000032244
UCSC:RGD:1309674 Uniprot:D4A8S0
Length = 613
Score = 120 (47.3 bits), Expect = 0.00078, P = 0.00078
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + + + ++LG RWK M+ +E++PY E +AR ++
Sbjct: 417 KRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQ- 475
Query: 618 YKDEISGYK-NPKP 630
+ ++ YK P+P
Sbjct: 476 HLEKYPDYKYKPRP 489
>UNIPROTKB|F1REZ8 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051219 "phosphoprotein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0034056 "estrogen response element
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 OMA:HSLIMRS EMBL:CU442721
EMBL:CU457410 Ensembl:ENSSSCT00000003136 Uniprot:F1REZ8
Length = 542
Score = 119 (46.9 bits), Expect = 0.00084, P = 0.00084
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 223 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 282
Query: 615 KKRYKDEISGYK 626
KK Y ++ Y+
Sbjct: 283 KKEYLKALAAYR 294
>UNIPROTKB|D4A535 [details] [associations]
symbol:D4A535 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00567139 Ensembl:ENSRNOT00000049646 Uniprot:D4A535
Length = 204
Score = 111 (44.1 bits), Expect = 0.00085, P = 0.00085
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 565 FIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISG 624
F+F S+ IK +PG++ DV + LGE W +V +++PYE +A K++ + +I+
Sbjct: 97 FLFCSEY-CPKIKDEHPGLSIGDVTKKLGETWSNTAVNDKQPYEKEAAKLKEKCEKDIAA 155
Query: 625 YK-NPKP 630
Y+ KP
Sbjct: 156 YRAKGKP 162
Score = 111 (44.1 bits), Expect = 0.00085, P = 0.00085
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKK--SNPGIAFTDVGRVLGERWKKMSVEE-REPYESKA 611
P P+ M + FF Q RE KK S+ + F++ + ERWK MS +E R +E
Sbjct: 6 PKKPRGKMLSYAFFVQTCREEHKKQHSDASVNFSEFSKKCSERWKTMSAKENRGIFEDMT 65
Query: 612 RADKKRYKDEISGYKNP 628
+A K Y+ E+ Y P
Sbjct: 66 KAGKASYEREMKTYLPP 82
>UNIPROTKB|E1BKT2 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051219 "phosphoprotein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0034056 "estrogen response element
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 CTD:27324 OMA:HSLIMRS
EMBL:DAAA02046427 EMBL:DAAA02046428 EMBL:DAAA02046429
EMBL:DAAA02046430 IPI:IPI00715207 RefSeq:XP_002694823.1
RefSeq:XP_885168.3 ProteinModelPortal:E1BKT2
Ensembl:ENSBTAT00000000539 GeneID:539135 KEGG:bta:539135
NextBio:20877802 Uniprot:E1BKT2
Length = 556
Score = 119 (46.9 bits), Expect = 0.00087, P = 0.00087
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 252 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 311
Query: 615 KKRYKDEISGYK 626
KK Y ++ Y+
Sbjct: 312 KKEYLKALAAYR 323
>UNIPROTKB|Q28EW4 [details] [associations]
symbol:sox13 "Transcription factor Sox-13" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0006355
GO:GO:0043565 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101789
CTD:9580 eggNOG:NOG275089 KO:K09269 HOGENOM:HOG000056455
EMBL:CR762311 RefSeq:NP_001017004.1 UniGene:Str.11026
ProteinModelPortal:Q28EW4 SMR:Q28EW4 Ensembl:ENSXETT00000064129
GeneID:549758 KEGG:xtr:549758 Xenbase:XB-GENE-481889 Bgee:Q28EW4
Uniprot:Q28EW4
Length = 566
Score = 119 (46.9 bits), Expect = 0.00090, P = 0.00090
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARADKKR 617
KR M+ F+ +++ ER I ++ P + + + ++LG RWK MS E++PY E +AR ++
Sbjct: 379 KRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNAEKQPYYEEQARLSRQ- 437
Query: 618 YKDEISGYK-NPKP 630
+ + YK P+P
Sbjct: 438 HLERYPDYKYKPRP 451
>UNIPROTKB|P40649 [details] [associations]
symbol:sox13 "Transcription factor Sox-13" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0043565
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:9580 HOVERGEN:HBG003915 KO:K09269 EMBL:D50552
EMBL:BC068647 EMBL:X65655 PIR:S71466 RefSeq:NP_001081238.1
UniGene:Xl.13036 ProteinModelPortal:P40649 SMR:P40649 GeneID:397727
KEGG:xla:397727 Xenbase:XB-GENE-865496 Uniprot:P40649
Length = 567
Score = 119 (46.9 bits), Expect = 0.00090, P = 0.00090
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 556 NAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPY-ESKARAD 614
N KR M+ F+ +++ ER I ++ P + + + ++LG RWK MS E++PY E +AR
Sbjct: 390 NHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNGEKQPYYEEQARLS 449
Query: 615 KKRYKDEISGYK-NPKP 630
++ + + YK P+P
Sbjct: 450 RQ-HLERYPDYKYKPRP 465
>UNIPROTKB|O94900 [details] [associations]
symbol:TOX "Thymocyte selection-associated high mobility
group box protein TOX" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 HOGENOM:HOG000230949 HOVERGEN:HBG051183
eggNOG:NOG284736 EMBL:AB018351 EMBL:BC016665 IPI:IPI00006065
RefSeq:NP_055544.1 UniGene:Hs.491805 UniGene:Hs.634856
ProteinModelPortal:O94900 SMR:O94900 STRING:O94900
PhosphoSite:O94900 PaxDb:O94900 PRIDE:O94900 DNASU:9760
Ensembl:ENST00000361421 GeneID:9760 KEGG:hsa:9760 UCSC:uc003xtw.1
CTD:9760 GeneCards:GC08M059717 HGNC:HGNC:18988 HPA:HPA018322
MIM:606863 neXtProt:NX_O94900 PharmGKB:PA162406704
InParanoid:O94900 OMA:CRNPPAQ OrthoDB:EOG44XJGQ GenomeRNAi:9760
NextBio:36737 ArrayExpress:O94900 Bgee:O94900 CleanEx:HS_TOX
Genevestigator:O94900 GermOnline:ENSG00000198846 Uniprot:O94900
Length = 526
Score = 121 (47.7 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 258 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAA 317
Query: 615 KKRYKDEISGYK 626
KK Y +++ Y+
Sbjct: 318 KKEYLKQLAAYR 329
Score = 42 (19.8 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 623 SGYKNPKPMDIDSGNE 638
SG +NP P +D N+
Sbjct: 495 SGCRNPPPQPVDWNND 510
>MGI|MGI:3039593 [details] [associations]
symbol:Tox3 "TOX high mobility group box family member 3"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0019722 "calcium-mediated signaling"
evidence=ISO] [GO:0034056 "estrogen response element binding"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0051219
"phosphoprotein binding" evidence=ISO] InterPro:IPR009071
PROSITE:PS00353 MGI:MGI:3039593 Pfam:PF00505 GO:GO:0005634
GO:GO:0006915 GO:GO:0045893 GO:GO:0042803 GO:GO:0043524
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 HOGENOM:HOG000230949
HOVERGEN:HBG051183 HSSP:Q66JW3 CTD:27324 eggNOG:NOG284736
OMA:HSLIMRS ChiTaRS:TOX3 EMBL:AK082602 EMBL:BC052044
IPI:IPI00330486 RefSeq:NP_766501.2 UniGene:Mm.302755
ProteinModelPortal:Q80W03 SMR:Q80W03 STRING:Q80W03
PhosphoSite:Q80W03 PaxDb:Q80W03 PRIDE:Q80W03
Ensembl:ENSMUST00000109621 GeneID:244579 KEGG:mmu:244579
UCSC:uc009msb.2 InParanoid:Q80W03 OrthoDB:EOG4K0QNS NextBio:386323
Bgee:Q80W03 CleanEx:MM_TOX3 Genevestigator:Q80W03 Uniprot:Q80W03
Length = 575
Score = 119 (46.9 bits), Expect = 0.00092, P = 0.00092
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 251 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 310
Query: 615 KKRYKDEISGYK 626
KK Y ++ Y+
Sbjct: 311 KKEYLKALAAYR 322
>UNIPROTKB|O15405 [details] [associations]
symbol:TOX3 "TOX high mobility group box family member 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0051219
"phosphoprotein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0034056 "estrogen
response element binding" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0006915 GO:GO:0045893
GO:GO:0042803 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0034056 HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AK299202
EMBL:AC007490 EMBL:U80736 IPI:IPI00903025 IPI:IPI00929129
RefSeq:NP_001073899.2 RefSeq:NP_001139660.1 UniGene:Hs.460789
HSSP:Q66JW3 ProteinModelPortal:O15405 SMR:O15405 STRING:O15405
PhosphoSite:O15405 PaxDb:O15405 PRIDE:O15405 DNASU:27324
Ensembl:ENST00000219746 Ensembl:ENST00000407228 GeneID:27324
KEGG:hsa:27324 UCSC:uc002egw.2 CTD:27324 GeneCards:GC16M052471
H-InvDB:HIX0013031 HGNC:HGNC:11972 HPA:HPA040376 MIM:611416
neXtProt:NX_O15405 PharmGKB:PA162406752 eggNOG:NOG284736
OMA:HSLIMRS ChiTaRS:TOX3 GenomeRNAi:27324 NextBio:50340
ArrayExpress:O15405 Bgee:O15405 CleanEx:HS_TOX3
Genevestigator:O15405 Uniprot:O15405
Length = 576
Score = 119 (46.9 bits), Expect = 0.00092, P = 0.00092
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 252 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 311
Query: 615 KKRYKDEISGYK 626
KK Y ++ Y+
Sbjct: 312 KKEYLKALAAYR 323
>RGD|1311529 [details] [associations]
symbol:Tox3 "TOX high mobility group box family member 3"
species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
evidence=ISO;ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0019722 "calcium-mediated signaling"
evidence=IDA] [GO:0034056 "estrogen response element binding"
evidence=ISO;ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISO;ISS] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=ISO;ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0051219 "phosphoprotein binding" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1311529
GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0042803
GO:GO:0019722 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0034056 HOVERGEN:HBG051183 eggNOG:NOG284736 OrthoDB:EOG4K0QNS
EMBL:EU194254 IPI:IPI00371454 UniGene:Rn.41060
Genevestigator:B7SBD2 Uniprot:B7SBD2
Length = 577
Score = 119 (46.9 bits), Expect = 0.00092, P = 0.00092
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 251 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 310
Query: 615 KKRYKDEISGYK 626
KK Y ++ Y+
Sbjct: 311 KKEYLKALAAYR 322
>UNIPROTKB|E1BQV6 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0034056
"estrogen response element binding" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0043524
"negative regulation of neuron apoptotic process" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0051219 "phosphoprotein binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0043524
GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0034056 GeneTree:ENSGT00560000076898
OMA:HSLIMRS EMBL:AADN02038322 EMBL:AADN02038323 EMBL:AADN02038324
EMBL:AADN02038325 EMBL:AADN02038326 EMBL:AADN02038327
EMBL:AADN02038328 EMBL:AADN02038329 IPI:IPI00576205
Ensembl:ENSGALT00000005929 ArrayExpress:E1BQV6 Uniprot:E1BQV6
Length = 580
Score = 119 (46.9 bits), Expect = 0.00093, P = 0.00093
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 555 PNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARAD 614
PN P++ +S + F + + IK NP F +V +++ W + E+++ Y+ K A
Sbjct: 257 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 316
Query: 615 KKRYKDEISGYK 626
KK Y ++ Y+
Sbjct: 317 KKEYLKALAAYR 328
>UNIPROTKB|Q03255 [details] [associations]
symbol:SRY "Sex-determining region Y protein" species:9913
"Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:2000020 "positive regulation of male
gonad development" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0007548 "sex
differentiation" evidence=IEA] [GO:0005516 "calmodulin binding"
evidence=IEA] [GO:0030238 "male sex determination" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017253 PIRSF:PIRSF037653
Pfam:PF00505 GO:GO:0005737 GO:GO:0007423 GO:GO:0016607
GO:GO:0003705 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0009887 GO:GO:0060009 GO:GO:0060324
GO:GO:0021983 GO:GO:0000979 GO:GO:0001106 GO:GO:0021854
GO:GO:0048515 GeneTree:ENSGT00690000101940 GO:GO:2000020
GO:GO:0030238 EMBL:Z30327 EMBL:U15569 EMBL:AB039748 EMBL:DQ336526
EMBL:EU233320 EMBL:EU294189 EMBL:Z18808 EMBL:S71489 IPI:IPI00716700
PIR:S34113 RefSeq:NP_001014407.1 UniGene:Bt.90486
ProteinModelPortal:Q03255 SMR:Q03255 Ensembl:ENSBTAT00000062957
GeneID:280931 KEGG:bta:280931 CTD:6736 HOVERGEN:HBG008712 KO:K09266
OMA:QSYASAM NextBio:20805048 PANTHER:PTHR10270:SF48 Uniprot:Q03255
Length = 229
Score = 112 (44.5 bits), Expect = 0.00097, P = 0.00097
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 559 KRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRY 618
KR M+ FI +S+ R + NP + +D+ + LG WK+++ E+ P+ +A+ +
Sbjct: 55 KRPMNAFIVWSRERRRKVALENPKMKNSDISKQLGYEWKRLTDAEKRPFFEEAQRLLAIH 114
Query: 619 KDEISGYK 626
+D+ GYK
Sbjct: 115 RDKYPGYK 122
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.136 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 642 571 0.00080 120 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 208
No. of states in DFA: 602 (64 KB)
Total size of DFA: 299 KB (2154 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.91u 0.09s 48.00t Elapsed: 00:00:05
Total cpu time: 47.94u 0.09s 48.03t Elapsed: 00:00:05
Start: Tue May 21 07:42:26 2013 End: Tue May 21 07:42:31 2013
WARNINGS ISSUED: 1