Query 006512
Match_columns 642
No_of_seqs 312 out of 1372
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 18:23:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006512.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2140-2144//hhsearch_pdb/006512hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gcl_A Hypothetical 63.0 kDa p 1.0 1 1 584.2 25.3 258 186-443 2-260 (261)
2 3f5r_A FACT complex subunit PO 1.0 1 1 374.8 10.3 161 1-164 21-189 (191)
3 3fss_A Histone chaperone RTT10 1.0 1 1 227.8 23.6 211 205-434 5-237 (237)
4 2co9_A Thymus high mobility gr 1.0 1 1 150.3 5.6 94 545-638 5-98 (102)
5 1k99_A Upstream binding factor 1.0 1 1 146.5 6.1 85 549-633 2-86 (99)
6 1cg7_A Protein (NON histone pr 1.0 1 1 143.9 -1.1 83 547-629 10-92 (93)
7 2lhj_A High mobility group pro 1.0 1 1 143.0 3.8 83 546-628 11-95 (97)
8 1wgf_A Upstream binding factor 1.0 1 1 142.1 2.6 82 544-625 7-88 (90)
9 2eqz_A High mobility group pro 1.0 1 1 141.4 6.0 80 547-626 5-86 (86)
10 2cs1_A PMS1 protein homolog 1; 1.0 1 1 140.1 5.7 88 552-639 2-91 (92)
No 1
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=1.00 E-value=1 Score=584.23 Aligned_cols=258 Identities=34% Similarity=0.647 Sum_probs=251.3
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEECCCCCEEEEEECCCEEEECCCCEEEEECCCEEEEEECCCCCCCEEEE
Q ss_conf 97899999997413456678642799738045437863379982470899711200476417441898501599890899
Q 006512 186 PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFV 265 (642)
Q Consensus 186 ~~~~~~~~~i~~~a~~~~~~~~~i~~~~~i~~~~PRGry~i~~~~~~lrl~gkt~d~kI~y~nI~r~f~lP~~d~~~~~~ 265 (642)
++|++|+++||+||+|++++|++||+|++|+|+||||||+|+||.++||||||||||+|+|++|+|+|+||+||+.|++|
T Consensus 2 ~~~~~~~~~i~~ka~i~~~~gd~i~~~~dv~~ltPRGrydi~~~~~~lrl~gkt~dyki~~~~I~r~f~LP~pd~~~~~~ 81 (261)
T 2gcl_A 2 HMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHMM 81 (261)
T ss_dssp ------------------CCTTSSEEEEEEEEEETTEEEEEEECSSEEEEEESSCEEEEEGGGEEEEEEEECTTSSEEEE
T ss_pred CHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEECCCCCEEEEEECCCEEEECCCCCCEECHHHEEEEEECCCCCCCCEEE
T ss_conf 48999999998664612137856999817448767883689995370798478645243446689999825888674699
Q ss_pred EEECCCCCCCCCCCCCEEEEEEECCCEEHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCC
Q ss_conf 99358951479854652899997264010012478989855520232421232258999999953039802157886567
Q 006512 266 VVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSA 345 (642)
Q Consensus 266 vi~L~~PirqGqt~y~~iv~~f~~~e~~~~el~~~eee~~~k~~~~l~~~~~g~~~~v~~~~~k~l~~~ki~~P~~F~s~ 345 (642)
||.|+||||||||+|++|||||++++++++++|+++++++++|+++|.++|+|++|++++++|++|++++++.|+.|.|+
T Consensus 82 vi~ld~PirqGqt~y~~lV~qf~~~e~~~~~ln~~~~~~~~ky~~~L~~~~~g~~~~vv~~ilk~l~g~kv~~P~~F~S~ 161 (261)
T 2gcl_A 82 VMAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSK 161 (261)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEETTCEEEEECCCCHHHHHHHTTTTCCSEEEEEHHHHHHHHHHHHHCCCEECCCSCCCT
T ss_pred EEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCC
T ss_conf 99658976589846883999981898637662488789764541245532477299999999998649756358832358
Q ss_pred CCCCEEEEEECCCEEEEEECCCCEEECCCCCEEEECCCEEEEEEEEECCCCCCEEEEEEEEEECCC-CEEEEEEECHHHH
Q ss_conf 886307874217403798247630121678769971756699999712899612339899999078-1489940032333
Q 006512 346 QDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTE-QEHLFRNIQRNEY 424 (642)
Q Consensus 346 ~~~~~v~c~~ka~~G~LypL~~~lifi~KPp~~I~~~eI~~V~f~Rv~~~~~~~rtFDl~i~~K~~-~~~~Fs~I~~~e~ 424 (642)
.+++||+|++||++|+||||++||+|+||||+||+|++|++|+|+|++++++++|||||+|++|++ ++|+|+||+|+||
T Consensus 162 ~~~~~Vkcs~ka~eG~LypL~~gflF~~KP~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g~~~~~Fs~IdreE~ 241 (261)
T 2gcl_A 162 YDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQ 241 (261)
T ss_dssp TSCSCEEEEETTEEEEEEECSSEEEEESSSCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGH
T ss_pred CCCCEEEEECCCCCEEEEEECCCEEEEECCCEEEEHHHEEEEEEEECCCCCCCCCEEEEEEEECCCCCCEEECCCCHHHH
T ss_conf 99842788655775489871582698657747988458518999961687566755879999868973078836498998
Q ss_pred HHHHHHHHCCCCEEEECCC
Q ss_conf 3088888407926842587
Q 006512 425 HNLFDFISGKGLKIMNLGD 443 (642)
Q Consensus 425 ~~l~~fl~~k~l~~~n~~~ 443 (642)
++|.+||++|+|+++|++.
T Consensus 242 ~~L~~ylk~k~l~ikn~~~ 260 (261)
T 2gcl_A 242 QLLEQFLKSKNLRVKNEDR 260 (261)
T ss_dssp HHHHHHHHHTTCCEEC---
T ss_pred HHHHHHHHHCCCEEECCCC
T ss_conf 8899999876974406778
No 2
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=374.76 Aligned_cols=161 Identities=29% Similarity=0.517 Sum_probs=153.1
Q ss_pred CCCCCCCCCEEECCCCCCCCEEEEEECCCEEEEEC-CCC-------CEEEEECCCCCEEEEEEECCCCEEEEEEECCCEE
Q ss_conf 98877535537538898977059983484038648-999-------6289605774414999723850478997389379
Q 006512 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKL-GGG-------KAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYY 72 (642)
Q Consensus 1 m~~~~~f~~i~~~~~g~~~~G~~~~~~~g~~wk~~-~~~-------~~~~~~~~~i~~~~w~r~~~~~~l~i~~k~~~~~ 72 (642)
|+ .++|+|||+++ +..+|+|||+++||+||++ +|| ++++|+++||.+++|+|++|+|+|||.+|++.+|
T Consensus 21 m~-~~~F~nI~l~~--s~~~G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a~W~r~~rg~~LrI~~K~g~~~ 97 (191)
T 3f5r_A 21 GM-STDFDRIYLNQ--SKFSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVI 97 (191)
T ss_dssp CS-SEEEEEEEETT--CSSCEEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEEEEEECSSSEEEEEEESSSCEE
T ss_pred EE-EEEECCEEECC--CCCCCEEEECCCCEEEEECCCCCCCCCCCCCEEEECHHHCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf 51-11688696427--7764179984786178616888865346674089767994727999842883799997799469
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 98389922399999999864099973000024300133446517558999599768997031101121367763999984
Q 006512 73 KFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFH 152 (642)
Q Consensus 73 ~~~Gf~~~d~~~l~~~~~~~~~~~~~~~e~~~~G~nwG~~~~~~~~l~f~~~~k~~feip~~~is~~~~~~knev~~ef~ 152 (642)
+||||+++|+++|+++|+++|+|+|+++|||++|||||+++|.|++|+|.|++||||||||++|||||+++||||+||||
T Consensus 98 ~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~kGwNWG~~~f~g~~L~F~v~~KpaFEIPls~VSn~nl~gKNEValEFh 177 (191)
T 3f5r_A 98 QLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIPYARINNTNLTSKNEVGIEFN 177 (191)
T ss_dssp EEEEECGGGHHHHHHHHHHHHCCCCEECSSTTTTC---------------------------------------------
T ss_pred EECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEECEECCCEEEEEECCEEEEEECHHHHHHCCCCCCCEEEEEEE
T ss_conf 96597878999999999987499730445603542310158828889998699057985479932202688755999982
Q ss_pred CCCCCCCCCCCC
Q ss_conf 179889888874
Q 006512 153 VDDTTGANEKDS 164 (642)
Q Consensus 153 ~~~~~~~~~~~~ 164 (642)
++++.++..+|+
T Consensus 178 ~~~~~~~~~~d~ 189 (191)
T 3f5r_A 178 IQDEEYQPAGDE 189 (191)
T ss_dssp ------------
T ss_pred CCCCCCCCCCCC
T ss_conf 277656677878
No 3
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=1.00 E-value=1 Score=227.83 Aligned_cols=211 Identities=19% Similarity=0.335 Sum_probs=153.8
Q ss_pred CCCEEEEECCEEEECC-CCCEEEEEECC---C--EEEECCCC--EEEEE--CCCEEEEEECCCCCCCE-EEEEEECCCCC
Q ss_conf 8642799738045437-86337998247---0--89971120--04764--17441898501599890-89999358951
Q 006512 205 GEEAVVTFEGIAILTP-RGRYSVELHLS---F--LRLQGQAN--DFKIQ--YSSVVRLFLLPKSNQPH-TFVVVTLDPPI 273 (642)
Q Consensus 205 ~~~~i~~~~~i~~~~P-RGry~i~~~~~---~--lrl~gkt~--d~kI~--y~nI~r~f~lP~~d~~~-~~~vi~L~~Pi 273 (642)
..+.|..+.+|+|++| |+|.++.+|-+ . +.-..+++ ++.|. +++|+-++|||.|.... .++.| ..++.
T Consensus 5 ~~~iIfei~~vS~~sP~RKKlnl~~hl~~~~~~P~lsi~~~~~~E~si~~l~~~i~~~~~LPvpeK~~~~~l~i-~~~~~ 83 (237)
T 3fss_A 5 ETNTIFKLEGVSVLSPLRKKLDLVFYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMASFLPVPEKPNLIYLFM-TYTSC 83 (237)
T ss_dssp -CEEEEEEEEEEEEESSCEEEEEEEEECTTTCCEEEEEEETTEEEEEECCHHHHEEEEEEEECTTCTTEEEEEE-EESCC
T ss_pred CCEEEEEECCEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEHHHHHCCEEEEEEECCCCCCCCEEEEE-EECCC
T ss_conf 42189970652685432002789999879999507887438984077466321503899815776677358999-94477
Q ss_pred CCCCCCCCEEEEEEECCCEEHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH---HHCCCEECCCCCCCC------
Q ss_conf 47985465289999726401001247898985552023242123225899999995---303980215788656------
Q 006512 274 RKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILR---GLSGAKITKPGKFRS------ 344 (642)
Q Consensus 274 rqGqt~y~~iv~~f~~~e~~~~el~~~eee~~~k~~~~l~~~~~g~~~~v~~~~~k---~l~~~ki~~P~~F~s------ 344 (642)
.-+...-| ||+|++.+... .++ .-.+.+..... .++...+-++ .|+|.++.-|..+.+
T Consensus 84 ~~~~~~dP-iv~t~n~~~~~--------kq~--~~~g~~~~~~~--~f~~~i~~~~rQ~~l~G~~i~~pf~~~~~~~~~~ 150 (237)
T 3fss_A 84 EDNKFSEP-VVMTLNKENTL--------NQF--KKLGLLDSNVT--DFEKCVEYIRKQAILTGFKISNPFVNSTLVDTDA 150 (237)
T ss_dssp GGGCCCSC-EEEEEEHHHHH--------HHH--HHTTSSCTTCC--CTHHHHHHHHHHHHHTTCCCBCTTC---------
T ss_pred CCCCCCCC-EEEEECHHHHH--------HHH--HHCCCCCCCCH--HHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCC
T ss_conf 78888999-99997618865--------555--43577765404--6899999999877544824347655532203788
Q ss_pred -CCCCCEEEEEECCCEEEEEECCCCEEE-CCCCCEEEECCCEEEEEEEEECCCCCCEEEEEEEEEECCCCEEEEEEECHH
Q ss_conf -788630787421740379824763012-167876997175669999971289961233989999907814899400323
Q 006512 345 -AQDGYAVKSSLKAEDGVLYPLEKSFFF-LPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRN 422 (642)
Q Consensus 345 -~~~~~~v~c~~ka~~G~LypL~~~lif-i~KPp~~I~~~eI~~V~f~Rv~~~~~~~rtFDl~i~~K~~~~~~Fs~I~~~ 422 (642)
....++|+|++||++|+||||++||+| ++||++||++++|++|+|+|+++ |||||+|++|++.+++|+||+|+
T Consensus 151 ~~~~~~~Vkc~~kAkeG~LyfL~~~ilFgf~KP~l~i~~~dI~svs~Srv~~-----RTFdl~v~~k~g~e~eFsmIDq~ 225 (237)
T 3fss_A 151 EKINSFHLQCHRGTKEGTLYFLPDHIIFGFKKPILLLDASDIESITYSSITR-----LTFNASLVTKDGEKYEFSMIDQT 225 (237)
T ss_dssp -CCCCEEEEEESSSSEEEEEECSSEEEEESSSSCEEEEGGGEEEEEEESCCS-----SEEEEEEEETTSCEEEEEEEEGG
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEECCCCEEEEEEHHEEEEEEEECCC-----CEEEEEEEECCCCEEEEEECCHH
T ss_conf 8777568999737777079970574499648874999801588999982357-----48999999789970788304988
Q ss_pred HHHHHHHHHHCC
Q ss_conf 333088888407
Q 006512 423 EYHNLFDFISGK 434 (642)
Q Consensus 423 e~~~l~~fl~~k 434 (642)
||++|.+|+++|
T Consensus 226 E~~~Id~fvk~K 237 (237)
T 3fss_A 226 EYAKIDDYVKRK 237 (237)
T ss_dssp GHHHHHHHHHC-
T ss_pred HHHHHHHHHHCC
T ss_conf 987799997529
No 4
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=150.31 Aligned_cols=94 Identities=28% Similarity=0.555 Sum_probs=84.0
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 21223466899998788511676514778989873999982256579999862199444223499999999999998216
Q 006512 545 KKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISG 624 (642)
Q Consensus 545 kkkkkkkkkd~~~PKRP~sAy~lF~~e~R~~ik~~~P~~~~~eisk~lge~Wk~Ls~eeK~~y~~~A~~~k~~y~~e~~~ 624 (642)
.++++++++||++||||+|||||||+++|..++.+||++++.+|++.||++|++|++++|++|.++|++++++|..+|++
T Consensus 5 ~~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 84 (102)
T 2co9_A 5 SSGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAA 84 (102)
T ss_dssp CCCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988777898989999999999999999999999789999999999999986099999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 67999999899999
Q 006512 625 YKNPKPMDIDSGNE 638 (642)
Q Consensus 625 yk~~~~~~~~~~~e 638 (642)
|+...........+
T Consensus 85 Y~~~~~~~~~~e~~ 98 (102)
T 2co9_A 85 YRASLVSKSYTDSG 98 (102)
T ss_dssp HHHHHTSSCCCCCS
T ss_pred HHHHCCCCCCCCCC
T ss_conf 98531310002246
No 5
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=1.00 E-value=1 Score=146.49 Aligned_cols=85 Identities=20% Similarity=0.465 Sum_probs=80.8
Q ss_pred CCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 34668999987885116765147789898739999822565799998621994442234999999999999982166799
Q 006512 549 QKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNP 628 (642)
Q Consensus 549 kkkkkd~~~PKRP~sAy~lF~~e~R~~ik~~~P~~~~~eisk~lge~Wk~Ls~eeK~~y~~~A~~~k~~y~~e~~~yk~~ 628 (642)
+++++||+.||||+|||||||++.|+.++.++|++++.+|++.||++|++|++++|++|.++|++++++|..+|.+|+..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98889979798998899999999999999888799889999999999982999999999999999999999999999998
Q ss_pred CCCCC
Q ss_conf 99998
Q 006512 629 KPMDI 633 (642)
Q Consensus 629 ~~~~~ 633 (642)
.|.-.
T Consensus 82 ~P~~~ 86 (99)
T 1k99_A 82 HPDLI 86 (99)
T ss_dssp CCCCS
T ss_pred CCCCC
T ss_conf 87856
No 6
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=1.00 E-value=1 Score=143.90 Aligned_cols=83 Identities=49% Similarity=0.925 Sum_probs=78.1
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 22346689999878851167651477898987399998225657999986219944422349999999999999821667
Q 006512 547 KKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 626 (642)
Q Consensus 547 kkkkkkkd~~~PKRP~sAy~lF~~e~R~~ik~~~P~~~~~eisk~lge~Wk~Ls~eeK~~y~~~A~~~k~~y~~e~~~yk 626 (642)
+++++++||+.||||+|||+|||+++|..++.+||++++.+|++.||++|++|++++|++|.++|++++++|..+|++|+
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66778899998989998999999999999998878998999999999999759999999999999999999999999998
Q ss_pred CCC
Q ss_conf 999
Q 006512 627 NPK 629 (642)
Q Consensus 627 ~~~ 629 (642)
.+.
T Consensus 90 ~~~ 92 (93)
T 1cg7_A 90 ATL 92 (93)
T ss_dssp HHT
T ss_pred HCC
T ss_conf 726
No 7
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=1.00 E-value=1 Score=142.97 Aligned_cols=83 Identities=41% Similarity=0.805 Sum_probs=77.8
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCC--CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 122346689999878851167651477898987399998--225657999986219944422349999999999999821
Q 006512 546 KKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEIS 623 (642)
Q Consensus 546 kkkkkkkkd~~~PKRP~sAy~lF~~e~R~~ik~~~P~~~--~~eisk~lge~Wk~Ls~eeK~~y~~~A~~~k~~y~~e~~ 623 (642)
++++++++||++||||+|||+|||+++|..++.+||+++ +.+|++.||++|++|++++|++|+++|++++++|..+|+
T Consensus 11 ~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 90 (97)
T 2lhj_A 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKA 90 (97)
T ss_dssp CCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44566889989899998799999999999999888798765999999999999749999999999999999999999999
Q ss_pred CCCCC
Q ss_conf 66799
Q 006512 624 GYKNP 628 (642)
Q Consensus 624 ~yk~~ 628 (642)
+|+.+
T Consensus 91 ~y~~~ 95 (97)
T 2lhj_A 91 EYAQR 95 (97)
T ss_dssp HHHHH
T ss_pred HHHHC
T ss_conf 98833
No 8
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=1.00 E-value=1 Score=142.06 Aligned_cols=82 Identities=22% Similarity=0.463 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32122346689999878851167651477898987399998225657999986219944422349999999999999821
Q 006512 544 GKKKKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEIS 623 (642)
Q Consensus 544 ~kkkkkkkkkd~~~PKRP~sAy~lF~~e~R~~ik~~~P~~~~~eisk~lge~Wk~Ls~eeK~~y~~~A~~~k~~y~~e~~ 623 (642)
.+++++++++||++||||+|||||||+++|+.++.+||++++.+|++.||++|++|++++|++|+++|++++++|.++|.
T Consensus 7 ~k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 7 GKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp CSSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99876768899898999998999999999999999878998999999999999719999999999999999999999998
Q ss_pred CC
Q ss_conf 66
Q 006512 624 GY 625 (642)
Q Consensus 624 ~y 625 (642)
.+
T Consensus 87 ~~ 88 (90)
T 1wgf_A 87 PS 88 (90)
T ss_dssp SC
T ss_pred HH
T ss_conf 75
No 9
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=141.37 Aligned_cols=80 Identities=40% Similarity=0.689 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCC--CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 22346689999878851167651477898987399998--2256579999862199444223499999999999998216
Q 006512 547 KKQKKKKDPNAPKRAMSGFIFFSQMERENIKKSNPGIA--FTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISG 624 (642)
Q Consensus 547 kkkkkkkd~~~PKRP~sAy~lF~~e~R~~ik~~~P~~~--~~eisk~lge~Wk~Ls~eeK~~y~~~A~~~k~~y~~e~~~ 624 (642)
++++.++||++||||+|||++||+++|+.++.+||+++ +.+|++.||++|++|++++|++|+++|++++++|.++|++
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88988899999999876999999999999998887987769999999999998299999999999999999999999987
Q ss_pred CC
Q ss_conf 67
Q 006512 625 YK 626 (642)
Q Consensus 625 yk 626 (642)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred CC
T ss_conf 19
No 10
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=140.12 Aligned_cols=88 Identities=30% Similarity=0.405 Sum_probs=80.0
Q ss_pred CCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 68999987885116765147789898739999822565799998621994442234999999999999982166799999
Q 006512 552 KKDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPM 631 (642)
Q Consensus 552 kkd~~~PKRP~sAy~lF~~e~R~~ik~~~P~~~~~eisk~lge~Wk~Ls~eeK~~y~~~A~~~k~~y~~e~~~yk~~~~~ 631 (642)
..++++||||+||||+||+++|+.++.+||++++.+|++.||++|++|++++|++|+++|++++++|.++|++|+..++.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98999897999799999999999999887899999999999999821999999999999999999999999999984778
Q ss_pred C--CCCCCCC
Q ss_conf 9--8999999
Q 006512 632 D--IDSGNES 639 (642)
Q Consensus 632 ~--~~~~~e~ 639 (642)
. .+.++.|
T Consensus 82 ~~~k~~~p~~ 91 (92)
T 2cs1_A 82 MSLKDSGPSS 91 (92)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCC
T ss_conf 8877799999
Done!