Query 006513
Match_columns 642
No_of_seqs 510 out of 3731
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 00:22:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2205 KdpD Osmosensitive K+ 100.0 9.1E-66 2E-70 554.1 49.0 472 51-615 397-884 (890)
2 PRK10490 sensor protein KdpD; 100.0 1.4E-51 3.1E-56 481.6 52.5 472 50-614 399-886 (895)
3 PRK13837 two-component VirA-li 100.0 2.2E-40 4.7E-45 388.5 53.8 462 113-642 237-704 (828)
4 COG5002 VicK Signal transducti 100.0 2.4E-41 5.1E-46 331.2 19.5 226 367-615 222-453 (459)
5 TIGR02916 PEP_his_kin putative 100.0 1.8E-37 3.9E-42 356.6 53.2 442 76-609 224-679 (679)
6 PRK11091 aerobic respiration c 100.0 1.1E-37 2.3E-42 365.2 47.5 251 365-642 278-532 (779)
7 PRK10618 phosphotransfer inter 100.0 1.7E-38 3.7E-43 368.1 34.1 263 352-642 432-696 (894)
8 PRK09303 adaptive-response sen 100.0 2.2E-36 4.9E-41 324.0 32.9 236 354-611 135-378 (380)
9 PRK11107 hybrid sensory histid 100.0 1.1E-35 2.3E-40 355.1 38.8 271 347-642 270-543 (919)
10 PRK10841 hybrid sensory kinase 100.0 4E-36 8.7E-41 353.2 33.0 237 354-613 431-670 (924)
11 TIGR02956 TMAO_torS TMAO reduc 100.0 1.9E-35 4.1E-40 354.8 37.7 259 356-642 450-709 (968)
12 PRK15347 two component system 100.0 3.2E-35 7E-40 351.1 35.5 245 345-613 373-617 (921)
13 COG4251 Bacteriophytochrome (l 100.0 1E-33 2.2E-38 296.8 41.2 235 353-615 507-746 (750)
14 PRK11466 hybrid sensory histid 100.0 4.2E-35 9E-40 349.6 34.4 272 341-642 415-688 (914)
15 PRK11006 phoR phosphate regulo 100.0 1.2E-32 2.6E-37 300.7 28.1 220 368-612 202-425 (430)
16 PRK09959 hybrid sensory histid 100.0 2.1E-32 4.6E-37 334.8 32.6 266 356-642 698-965 (1197)
17 PRK10364 sensor protein ZraS; 100.0 1.4E-29 3.1E-34 278.6 47.1 214 369-612 236-450 (457)
18 TIGR02938 nifL_nitrog nitrogen 100.0 1.5E-31 3.2E-36 296.4 30.4 216 369-610 275-494 (494)
19 COG4191 Signal transduction hi 100.0 5.4E-31 1.2E-35 277.5 31.2 214 369-610 383-601 (603)
20 COG3852 NtrB Signal transducti 100.0 2.9E-31 6.2E-36 257.3 25.2 223 368-612 130-356 (363)
21 PRK10604 sensor protein RstB; 100.0 1.1E-30 2.3E-35 285.3 29.4 231 351-613 193-426 (433)
22 PRK10815 sensor protein PhoQ; 100.0 1.8E-30 3.8E-35 286.5 30.1 234 349-611 245-479 (485)
23 PRK10755 sensor protein BasS/P 100.0 6.3E-30 1.4E-34 272.2 29.0 212 371-611 138-351 (356)
24 PRK10549 signal transduction h 100.0 6.3E-30 1.4E-34 282.2 29.9 243 347-614 217-462 (466)
25 TIGR03785 marine_sort_HK prote 100.0 2.2E-29 4.7E-34 288.6 30.1 239 347-609 462-703 (703)
26 PRK09835 sensor kinase CusS; P 100.0 1.5E-26 3.3E-31 256.2 48.7 238 348-611 240-481 (482)
27 PRK10337 sensor protein QseC; 100.0 1.2E-28 2.6E-33 270.7 30.6 234 348-608 215-449 (449)
28 TIGR01386 cztS_silS_copS heavy 100.0 2.4E-28 5.2E-33 268.6 29.4 236 347-609 218-457 (457)
29 TIGR02966 phoR_proteo phosphat 100.0 2.2E-28 4.8E-33 256.7 27.0 216 369-608 113-333 (333)
30 PRK11073 glnL nitrogen regulat 100.0 5.2E-28 1.1E-32 256.6 28.1 219 369-611 129-348 (348)
31 PRK09467 envZ osmolarity senso 100.0 2.3E-27 4.9E-32 259.5 29.1 228 347-611 206-434 (435)
32 PRK13557 histidine kinase; Pro 100.0 2.3E-27 5E-32 266.4 29.8 256 369-642 162-422 (540)
33 PRK11100 sensory histidine kin 100.0 3.4E-27 7.3E-32 260.7 30.1 238 348-611 235-474 (475)
34 PRK09470 cpxA two-component se 100.0 4.9E-27 1.1E-31 258.6 30.4 237 347-612 220-459 (461)
35 PRK11360 sensory histidine kin 100.0 2.6E-26 5.6E-31 260.9 30.2 215 369-612 389-603 (607)
36 COG5000 NtrY Signal transducti 100.0 5.1E-25 1.1E-29 231.3 36.9 210 370-610 486-708 (712)
37 COG0642 BaeS Signal transducti 99.9 3.2E-25 6.9E-30 231.1 30.6 219 369-614 114-333 (336)
38 KOG0519 Sensory transduction h 99.9 3.7E-28 7.9E-33 278.6 3.4 576 21-596 23-621 (786)
39 PRK10600 nitrate/nitrite senso 99.9 3.5E-22 7.6E-27 225.8 50.9 345 160-612 210-558 (569)
40 PRK13560 hypothetical protein; 99.9 6.1E-25 1.3E-29 258.8 25.3 210 357-611 592-804 (807)
41 PRK11644 sensory histidine kin 99.9 4.2E-23 9E-28 228.0 31.6 249 313-610 244-494 (495)
42 COG4192 Signal transduction hi 99.9 1.6E-22 3.5E-27 205.0 28.8 212 371-611 452-667 (673)
43 PRK11086 sensory histidine kin 99.9 3.4E-23 7.5E-28 232.9 23.0 195 372-613 341-538 (542)
44 PRK15053 dpiB sensor histidine 99.9 1.1E-22 2.4E-27 229.1 26.2 193 374-612 342-541 (545)
45 COG3290 CitA Signal transducti 99.9 2.1E-20 4.6E-25 196.8 40.6 196 372-613 335-534 (537)
46 PRK10935 nitrate/nitrite senso 99.9 8.7E-18 1.9E-22 190.1 43.2 250 276-612 306-561 (565)
47 PRK13559 hypothetical protein; 99.9 2.9E-20 6.3E-25 198.3 21.6 186 370-611 170-360 (361)
48 PF02518 HATPase_c: Histidine 99.8 1.4E-19 3E-24 158.9 11.1 109 481-611 1-111 (111)
49 COG3850 NarQ Signal transducti 99.8 5.7E-16 1.2E-20 162.0 39.0 332 152-610 224-568 (574)
50 PRK10547 chemotaxis protein Ch 99.7 2.6E-16 5.6E-21 176.2 20.3 146 443-613 343-526 (670)
51 COG3851 UhpB Signal transducti 99.6 6E-12 1.3E-16 125.4 28.5 237 316-609 248-493 (497)
52 PRK04184 DNA topoisomerase VI 99.5 4E-14 8.7E-19 153.2 13.3 140 479-640 30-179 (535)
53 COG3275 LytS Putative regulato 99.5 2.2E-10 4.8E-15 118.6 37.9 318 190-614 228-555 (557)
54 COG4585 Signal transduction hi 99.5 1.6E-11 3.5E-16 131.1 27.4 124 448-610 242-365 (365)
55 smart00387 HATPase_c Histidine 99.5 6.9E-13 1.5E-17 114.8 13.5 109 481-611 1-111 (111)
56 COG0643 CheA Chemotaxis protei 99.4 7E-12 1.5E-16 141.3 22.2 145 444-613 391-576 (716)
57 KOG0519 Sensory transduction h 99.4 9.4E-14 2E-18 160.2 5.1 242 373-618 224-496 (786)
58 PRK14868 DNA topoisomerase VI 99.4 3.2E-12 7E-17 141.0 15.4 130 461-613 21-162 (795)
59 PRK15429 formate hydrogenlyase 99.4 1E-10 2.3E-15 134.6 26.0 184 162-358 177-366 (686)
60 COG3920 Signal transduction hi 99.4 4.4E-10 9.5E-15 110.3 26.4 196 369-613 18-218 (221)
61 TIGR01052 top6b DNA topoisomer 99.3 1.1E-11 2.4E-16 133.0 13.9 109 479-609 22-139 (488)
62 PRK14867 DNA topoisomerase VI 99.3 2.5E-11 5.5E-16 134.0 14.3 114 479-613 27-152 (659)
63 cd00075 HATPase_c Histidine ki 99.3 3E-11 6.6E-16 102.7 11.5 101 486-608 1-103 (103)
64 TIGR01925 spIIAB anti-sigma F 99.3 5.4E-11 1.2E-15 108.4 12.3 99 481-608 35-136 (137)
65 PF00512 HisKA: His Kinase A ( 99.2 2.7E-11 5.9E-16 96.0 8.1 66 369-434 1-68 (68)
66 COG4564 Signal transduction hi 99.2 4E-07 8.6E-12 90.4 38.0 194 372-613 253-450 (459)
67 PRK11061 fused phosphoenolpyru 99.2 1.4E-09 3.1E-14 124.8 24.4 161 170-343 3-164 (748)
68 PRK03660 anti-sigma F factor; 99.2 2.6E-10 5.6E-15 105.2 13.0 105 481-614 35-142 (146)
69 COG2972 Predicted signal trans 99.1 3.3E-08 7.1E-13 108.6 27.2 97 486-612 351-454 (456)
70 TIGR01817 nifA Nif-specific re 99.0 1.6E-08 3.6E-13 113.3 20.7 158 169-340 4-163 (534)
71 PF13492 GAF_3: GAF domain; PD 99.0 1.2E-08 2.6E-13 91.1 14.4 129 184-335 1-129 (129)
72 PF01590 GAF: GAF domain; Int 98.9 6E-09 1.3E-13 96.2 11.4 137 184-333 1-154 (154)
73 PRK04069 serine-protein kinase 98.9 1.8E-08 3.8E-13 94.4 12.8 105 482-614 39-147 (161)
74 PRK05022 anaerobic nitric oxid 98.8 2.2E-07 4.7E-12 103.4 19.6 166 170-351 4-174 (509)
75 smart00065 GAF Domain present 98.8 1.7E-07 3.6E-12 84.0 15.5 144 184-341 1-147 (149)
76 PF13185 GAF_2: GAF domain; PD 98.8 1.3E-07 2.9E-12 86.5 13.5 137 183-334 2-148 (148)
77 TIGR01924 rsbW_low_gc serine-p 98.7 1.1E-07 2.5E-12 88.6 12.5 103 484-614 41-147 (159)
78 PRK15429 formate hydrogenlyase 98.7 3.2E-07 6.9E-12 106.0 18.8 172 169-356 8-184 (686)
79 PF14501 HATPase_c_5: GHKL dom 98.7 2.6E-07 5.6E-12 79.1 11.7 96 482-609 2-100 (100)
80 KOG0787 Dehydrogenase kinase [ 98.6 6E-06 1.3E-10 83.8 21.0 184 405-612 174-382 (414)
81 COG3605 PtsP Signal transducti 98.6 2.9E-06 6.2E-11 90.4 17.8 155 172-339 5-160 (756)
82 smart00388 HisKA His Kinase A 98.5 5.5E-07 1.2E-11 69.7 7.8 64 370-433 2-65 (66)
83 COG1389 DNA topoisomerase VI, 98.5 1.2E-06 2.5E-11 90.9 11.6 134 483-638 34-176 (538)
84 PF13581 HATPase_c_2: Histidin 98.2 1E-05 2.2E-10 72.2 10.7 93 483-607 29-124 (125)
85 COG3604 FhlA Transcriptional r 98.2 7.1E-05 1.5E-09 79.4 17.2 178 169-359 33-214 (550)
86 cd00082 HisKA Histidine Kinase 98.1 1.8E-05 3.9E-10 60.6 8.1 62 369-430 3-65 (65)
87 COG2203 FhlA FOG: GAF domain [ 98.1 6.4E-06 1.4E-10 76.3 6.3 159 170-341 4-170 (175)
88 TIGR00585 mutl DNA mismatch re 98.0 5.3E-05 1.1E-09 79.0 11.3 95 484-607 21-125 (312)
89 PRK13558 bacterio-opsin activa 97.9 0.00084 1.8E-08 77.8 20.3 148 171-337 289-439 (665)
90 COG2172 RsbW Anti-sigma regula 97.5 0.0012 2.6E-08 60.3 12.0 88 481-596 36-127 (146)
91 PF13589 HATPase_c_3: Histidin 97.1 0.00032 6.9E-09 63.7 2.6 97 487-611 4-108 (137)
92 PRK00095 mutL DNA mismatch rep 97.0 0.0038 8.2E-08 71.1 10.6 84 485-597 22-114 (617)
93 COG5385 Uncharacterized protei 96.9 0.13 2.7E-06 46.8 17.3 192 373-607 18-211 (214)
94 PF11849 DUF3369: Domain of un 96.9 0.12 2.6E-06 48.9 18.4 153 156-343 8-172 (174)
95 PF10090 DUF2328: Uncharacteri 96.6 0.18 3.9E-06 47.9 17.3 171 386-596 2-174 (182)
96 PF13493 DUF4118: Domain of un 96.4 0.008 1.7E-07 51.7 6.2 82 53-134 2-98 (105)
97 COG1956 GAF domain-containing 96.3 0.2 4.3E-06 45.6 14.5 108 202-332 51-159 (163)
98 PF04340 DUF484: Protein of un 96.2 0.14 3.1E-06 50.6 14.9 162 148-335 52-222 (225)
99 PRK05559 DNA topoisomerase IV 95.6 0.025 5.3E-07 64.5 7.1 98 482-609 34-148 (631)
100 COG0323 MutL DNA mismatch repa 95.0 0.025 5.3E-07 64.4 4.5 57 486-566 24-80 (638)
101 PRK10963 hypothetical protein; 94.8 2.6 5.6E-05 41.6 17.7 162 147-335 48-218 (223)
102 PRK14083 HSP90 family protein; 94.7 0.036 7.9E-07 62.4 4.9 50 488-559 26-83 (601)
103 PTZ00272 heat shock protein 83 94.5 0.032 6.9E-07 63.7 3.9 49 490-559 30-92 (701)
104 PRK05218 heat shock protein 90 94.3 0.12 2.7E-06 58.7 7.9 53 540-596 74-141 (613)
105 TIGR01059 gyrB DNA gyrase, B s 94.0 0.11 2.3E-06 59.8 6.8 49 482-554 27-77 (654)
106 TIGR01055 parE_Gneg DNA topois 93.1 0.093 2E-06 59.7 4.3 80 482-585 27-123 (625)
107 PRK05644 gyrB DNA gyrase subun 93.0 0.35 7.7E-06 55.2 8.9 50 482-555 34-85 (638)
108 COG3159 Uncharacterized protei 92.7 4.8 0.0001 38.6 14.3 160 149-335 51-215 (218)
109 COG0326 HtpG Molecular chapero 91.8 0.34 7.3E-06 53.9 6.4 47 490-557 32-92 (623)
110 smart00433 TOP2c Topoisomerase 91.1 0.28 6.1E-06 55.7 5.1 45 487-555 3-49 (594)
111 COG5381 Uncharacterized protei 90.9 0.51 1.1E-05 42.0 5.3 31 486-517 64-94 (184)
112 PTZ00130 heat shock protein 90 88.4 0.59 1.3E-05 54.0 5.0 19 540-558 136-154 (814)
113 PF07568 HisKA_2: Histidine ki 88.1 5.7 0.00012 31.8 9.2 72 377-457 2-73 (76)
114 PRK14939 gyrB DNA gyrase subun 85.4 0.82 1.8E-05 52.9 4.0 47 484-554 36-84 (756)
115 PF14689 SPOB_a: Sensor_kinase 84.4 4 8.6E-05 31.3 6.2 45 373-421 15-59 (62)
116 PHA02569 39 DNA topoisomerase 84.3 0.58 1.3E-05 53.0 2.2 48 540-587 80-144 (602)
117 PF12805 FUSC-like: FUSC-like 83.7 25 0.00054 36.0 13.8 84 54-137 3-98 (284)
118 TIGR02851 spore_V_T stage V sp 82.7 42 0.0009 31.8 13.7 124 183-333 52-179 (180)
119 PF10066 DUF2304: Uncharacteri 81.1 37 0.00079 29.6 12.3 12 151-162 94-105 (115)
120 PLN03237 DNA topoisomerase 2; 79.5 2.3 4.9E-05 52.3 4.8 79 486-587 78-174 (1465)
121 KOG1977 DNA mismatch repair pr 78.5 3 6.5E-05 46.7 4.9 56 485-565 21-76 (1142)
122 TIGR01058 parE_Gpos DNA topois 78.4 1.8 4E-05 49.4 3.5 48 483-554 32-81 (637)
123 KOG1978 DNA mismatch repair pr 76.5 2.8 6E-05 47.0 4.0 55 486-564 21-75 (672)
124 PTZ00108 DNA topoisomerase 2-l 75.6 3.5 7.6E-05 50.8 5.0 97 486-609 58-175 (1388)
125 PLN03128 DNA topoisomerase 2; 75.5 4.3 9.4E-05 49.3 5.7 47 486-555 53-102 (1135)
126 COG4251 Bacteriophytochrome (l 73.4 1.7E+02 0.0037 33.2 19.1 39 171-209 329-367 (750)
127 PF06210 DUF1003: Protein of u 73.0 61 0.0013 27.9 11.9 17 118-134 37-53 (108)
128 KOG1979 DNA mismatch repair pr 73.0 4.6 0.0001 44.3 4.5 54 488-566 30-84 (694)
129 PF07851 TMPIT: TMPIT-like pro 72.7 80 0.0017 32.9 13.2 93 340-434 4-96 (330)
130 TIGR01667 YCCS_YHJK integral m 70.6 1.2E+02 0.0026 35.5 15.6 39 46-84 53-91 (701)
131 PF06018 CodY: CodY GAF-like d 64.4 49 0.0011 31.2 8.9 52 272-337 106-157 (177)
132 PRK11677 hypothetical protein; 61.1 81 0.0018 28.3 9.3 21 120-140 5-25 (134)
133 COG0187 GyrB Type IIA topoisom 60.9 7.3 0.00016 43.6 3.2 50 484-557 35-86 (635)
134 PF06305 DUF1049: Protein of u 60.3 42 0.00092 25.8 6.7 14 153-166 51-64 (68)
135 PTZ00109 DNA gyrase subunit b; 58.7 2.1 4.5E-05 50.0 -1.4 48 484-555 128-177 (903)
136 COG3071 HemY Uncharacterized e 54.7 2.7E+02 0.0058 29.7 13.1 43 371-413 249-291 (400)
137 PRK04158 transcriptional repre 51.9 2.6E+02 0.0057 28.0 12.8 53 271-337 107-159 (256)
138 PF11152 DUF2930: Protein of u 51.9 46 0.00099 31.9 6.5 72 240-328 122-193 (195)
139 COG3835 CdaR Sugar diacid util 51.7 3.1E+02 0.0067 28.8 12.8 73 271-361 69-141 (376)
140 COG3114 CcmD Heme exporter pro 50.7 1.1E+02 0.0024 23.5 6.9 23 141-163 38-60 (67)
141 PRK10263 DNA translocase FtsK; 50.6 6.1E+02 0.013 31.8 17.0 22 448-469 886-907 (1355)
142 PRK00888 ftsB cell division pr 50.5 1.4E+02 0.0031 25.5 8.8 15 153-167 37-51 (105)
143 PF14770 TMEM18: Transmembrane 49.8 1.8E+02 0.004 25.6 11.1 40 53-92 16-55 (123)
144 PF14965 BRI3BP: Negative regu 45.2 1.7E+02 0.0037 27.4 8.8 33 136-168 145-177 (177)
145 PF06103 DUF948: Bacterial pro 44.4 1.8E+02 0.0038 23.9 10.8 53 127-179 10-63 (90)
146 PRK11644 sensory histidine kin 44.1 4.7E+02 0.01 29.1 14.3 11 504-514 439-449 (495)
147 TIGR02921 PEP_integral PEP-CTE 42.0 4.2E+02 0.0091 29.9 12.5 29 51-80 112-140 (952)
148 COG4709 Predicted membrane pro 42.0 3.1E+02 0.0068 26.1 10.4 39 103-142 136-174 (195)
149 PF06295 DUF1043: Protein of u 41.4 2E+02 0.0044 25.5 8.7 21 122-142 3-23 (128)
150 TIGR01666 YCCS hypothetical me 40.0 6.8E+02 0.015 29.3 15.5 33 47-79 54-86 (704)
151 PRK13922 rod shape-determining 39.2 4.2E+02 0.0091 26.8 13.0 37 148-184 74-110 (276)
152 PF04995 CcmD: Heme exporter p 38.6 1.2E+02 0.0025 21.6 5.4 11 117-127 11-21 (46)
153 PF11833 DUF3353: Protein of u 38.2 2.3E+02 0.0049 27.3 9.0 37 66-102 128-165 (194)
154 PF15086 UPF0542: Uncharacteri 36.5 2.1E+02 0.0046 22.5 7.8 20 152-171 45-64 (74)
155 KOG3088 Secretory carrier memb 36.4 3.8E+02 0.0083 27.3 10.3 84 50-137 162-265 (313)
156 COG4420 Predicted membrane pro 36.0 3.9E+02 0.0084 25.4 13.5 11 100-110 82-92 (191)
157 PF13748 ABC_membrane_3: ABC t 35.5 4.5E+02 0.0098 26.0 11.1 54 143-196 161-216 (237)
158 COG3166 PilN Tfp pilus assembl 35.4 4.2E+02 0.0092 25.7 14.0 82 138-220 50-131 (206)
159 COG3105 Uncharacterized protei 34.5 3.3E+02 0.0072 24.1 8.7 24 121-144 11-34 (138)
160 COG0813 DeoD Purine-nucleoside 31.8 44 0.00094 32.5 3.0 53 478-553 18-70 (236)
161 PF14248 DUF4345: Domain of un 31.4 3.5E+02 0.0077 23.6 8.8 50 55-105 50-99 (124)
162 KOG4050 Glutamate transporter 31.2 4.3E+02 0.0092 24.4 11.0 41 103-143 107-147 (188)
163 PF07332 DUF1469: Protein of u 31.1 3E+02 0.0066 23.7 8.2 17 118-134 76-92 (121)
164 TIGR00219 mreC rod shape-deter 31.1 2.6E+02 0.0055 28.7 8.7 33 331-363 64-96 (283)
165 PF12282 H_kinase_N: Signal tr 30.5 4.1E+02 0.009 24.1 12.2 94 193-309 27-126 (145)
166 PF07213 DAP10: DAP10 membrane 30.3 1.3E+02 0.0029 24.1 4.9 29 25-58 21-49 (79)
167 PRK11677 hypothetical protein; 30.2 4.1E+02 0.0088 23.9 8.7 22 118-139 7-28 (134)
168 PF07536 HWE_HK: HWE histidine 29.8 87 0.0019 25.5 4.1 69 377-457 2-70 (83)
169 PF09515 Thia_YuaJ: Thiamine t 29.4 4.9E+02 0.011 24.6 10.9 57 46-102 69-131 (177)
170 cd07955 Anticodon_Ia_Cys_like 28.9 3.1E+02 0.0067 22.1 7.8 28 368-395 28-57 (81)
171 PF05651 Diacid_rec: Putative 28.2 4.4E+02 0.0095 23.6 14.0 89 187-309 4-92 (135)
172 COG4920 Predicted membrane pro 28.0 5E+02 0.011 25.1 9.1 28 99-132 23-50 (249)
173 KOG3689 Cyclic nucleotide phos 27.9 4.6E+02 0.01 30.4 10.6 67 270-348 278-345 (707)
174 PRK10631 p-hydroxybenzoic acid 27.0 9E+02 0.019 28.0 12.9 27 117-143 483-509 (652)
175 KOG3088 Secretory carrier memb 26.7 91 0.002 31.5 4.3 27 145-171 66-92 (313)
176 TIGR02209 ftsL_broad cell divi 26.3 3.4E+02 0.0073 21.7 9.3 11 178-188 53-63 (85)
177 PRK11477 carbohydrate diacid t 25.8 8.2E+02 0.018 26.0 13.8 88 187-308 9-96 (385)
178 COG4191 Signal transduction hi 25.2 9.8E+02 0.021 27.2 12.2 85 114-200 295-379 (603)
179 PF10856 DUF2678: Protein of u 25.1 1.1E+02 0.0025 26.4 4.0 22 80-101 60-81 (118)
180 PF11773 PulG: Type II secreto 24.0 3.7E+02 0.0081 21.9 6.5 15 120-134 9-23 (82)
181 PF08611 DUF1774: Fungal prote 23.8 2.8E+02 0.0061 23.3 6.0 25 77-101 7-35 (97)
182 PF05297 Herpes_LMP1: Herpesvi 23.3 27 0.00059 35.0 0.0 7 206-212 180-186 (381)
183 TIGR00799 mtp Golgi 4-transmem 23.2 7.3E+02 0.016 24.5 12.0 92 44-143 55-162 (258)
184 PF07492 Trehalase_Ca-bi: Neut 23.2 62 0.0013 20.8 1.5 11 539-549 14-24 (30)
185 PF11118 DUF2627: Protein of u 22.7 4E+02 0.0087 21.3 6.3 43 54-96 4-57 (77)
186 COG4839 FtsL Protein required 22.6 5.2E+02 0.011 22.6 9.7 21 172-192 83-103 (120)
187 PF12794 MscS_TM: Mechanosensi 22.3 9.2E+02 0.02 25.3 17.4 29 122-150 234-262 (340)
188 COG2820 Udp Uridine phosphoryl 21.6 2.1E+02 0.0046 28.3 5.7 53 478-554 21-73 (248)
189 PRK12585 putative monovalent c 21.5 7.2E+02 0.016 23.8 12.1 24 48-71 6-29 (197)
190 cd00546 QFR_TypeD_subunitC Qui 21.4 3E+02 0.0065 24.3 5.9 60 80-144 37-96 (124)
191 PRK11388 DNA-binding transcrip 21.2 1.3E+03 0.028 26.5 15.2 124 189-333 57-189 (638)
192 KOG0355 DNA topoisomerase type 21.1 1.3E+02 0.0028 35.1 4.6 49 484-555 52-102 (842)
193 TIGR00540 hemY_coli hemY prote 20.7 4E+02 0.0087 28.7 8.5 20 125-144 52-71 (409)
194 KOG1478 3-keto sterol reductas 20.7 63 0.0014 32.3 1.9 33 571-614 11-43 (341)
195 PRK14475 F0F1 ATP synthase sub 20.5 6.5E+02 0.014 23.3 8.7 10 403-412 150-159 (167)
196 PF09190 DALR_2: DALR domain; 20.3 84 0.0018 23.8 2.2 26 372-397 1-28 (63)
197 PRK13603 fumarate reductase su 20.3 3.4E+02 0.0074 23.9 6.1 61 80-145 37-97 (126)
No 1
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=9.1e-66 Score=554.08 Aligned_cols=472 Identities=13% Similarity=0.162 Sum_probs=396.6
Q ss_pred hhHHHHHHHhhHhHHHHHHHhcC-CCCchHHHHHHHHHHHHHhhHHHHHHHH-----------cCchhHHHHHHHHHHHH
Q 006513 51 SDFLIAVAYFSIPVELLYFISCS-NVPFKWVLIQFIAFIVLCGLTHLLNGWT-----------YGPHSFQLMLSLTVFKI 118 (642)
Q Consensus 51 sd~~ia~a~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 118 (642)
.|++++++++++.+.++.++... +..|..|+|+.|+++++...|.++++++ |.+|.|+|. ++++.|+
T Consensus 397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF~ePryTf~-v~d~~y~ 475 (890)
T COG2205 397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFFTEPRYTFA-VSDPQYL 475 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhheecCCceEEE-EecCchH
Confidence 68999999999999999988765 8899999999999999887666555544 256666655 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHhccchhhHHHHHHHHHHh
Q 006513 119 LTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSN 198 (642)
Q Consensus 119 ~t~~v~~~~ai~l~~l~~~~l~~~~~e~~l~~~~~~L~~e~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~ 198 (642)
+||+||+++|++++.| +.++++|.+..++|+++.+++++++++++.+.++++++.++..++.+
T Consensus 476 vTf~vml~vai~t~~L-----------------t~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~ 538 (890)
T COG2205 476 VTFAVMLAVALLTGNL-----------------TARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIAS 538 (890)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcCCeeEeCCCcchhhccCCCcccCCceeEEE
Q 006513 199 TLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIR 278 (642)
Q Consensus 199 ~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 278 (642)
+++. ++.++++++++....+ ..+ ..++..+..+. .|+...+.+.+. +........+.+
T Consensus 539 ~~~~-~v~i~l~~~~~~~~~~--~~~--------~~l~~~d~aaa-------~W~~~~~~~AG~----gTdTlpg~~~~~ 596 (890)
T COG2205 539 LLNQ-RVVILLPDDNGKLQPL--GNP--------DGLSADDRAAA-------QWAFENGKPAGA----GTDTLPGAKYLY 596 (890)
T ss_pred HhCC-ceEEEEecCCcccccc--cCC--------ccccHHHHHHh-------hchhhCCCcccc----CCCCCCCCceeE
Confidence 9998 5888988876533110 000 00111111122 223333332222 233344555888
Q ss_pred ecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 279 MPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQ 358 (642)
Q Consensus 279 ~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~ 358 (642)
+|+...+.. .||+.+.+......++++..++.++++|+|.|+++..+.++.++.+-+.
T Consensus 597 lPl~~~~~~-------------~gvlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~~--------- 654 (890)
T COG2205 597 LPLKSGGKV-------------LGVLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARLAA--------- 654 (890)
T ss_pred eecccCCce-------------EEEEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 997755554 6688888876667899999999999999999999999887755443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhcc--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 006513 359 AQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV--NLNSD-QRMIVETMMKSSNVLSTLISDVMDNSPKDSGR 435 (642)
Q Consensus 359 a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~--~~~~~-~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~ 435 (642)
+.++.|++|++++||||||||++|.|.++.|... .++++ +.+.+..|.+++++|.++|+||||++|+++|.
T Consensus 655 ------e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~ 728 (890)
T COG2205 655 ------ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGG 728 (890)
T ss_pred ------HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence 2378999999999999999999999999999853 34554 67999999999999999999999999999999
Q ss_pred ccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEec
Q 006513 436 FPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSEN 515 (642)
Q Consensus 436 ~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~ 515 (642)
++++++|..+.+++.+++..+++....+ .+.++++.++| ++.+|..+++||+.||++||+||+|++.+|.|.+..+.
T Consensus 729 ~~l~~~~~~veEvVg~Al~r~~k~~~~~--~i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~ 805 (890)
T COG2205 729 VNLKLDWVLVEEVVGEALQRLRKRFTGH--KIVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVER 805 (890)
T ss_pred cccccchhhHHHHHHHHHHHhhhhcCCc--eEEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEec
Confidence 9999999999999999999998877666 57777888988 79999999999999999999999999999999999887
Q ss_pred CCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC-CCCCCccchHHHHHHHHHHcCCEEEEE
Q 006513 516 GSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQLMQGNIWMV 594 (642)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~v~ 594 (642)
++ ++|+|.|+|+|||+++.++||++|||..+ +...|+||||+|||.||++|||+|+++
T Consensus 806 ~~---------------------v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ahgG~I~a~ 864 (890)
T COG2205 806 EN---------------------VVFSVIDEGPGIPEGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISAE 864 (890)
T ss_pred ce---------------------EEEEEEeCCCCCChhHHHHhhhhhhcCCCCCCCCCccccHHHHHHHHHHcCCeEEEE
Confidence 66 99999999999999999999999999665 457899999999999999999999999
Q ss_pred ecCCCCceEEEEEEEeecCCC
Q 006513 595 PSSHGFAQSMGLVLRFQLRPS 615 (642)
Q Consensus 595 s~~~g~Gt~f~i~LP~~~~~~ 615 (642)
++ +++|++|+|.||....+.
T Consensus 865 ~~-~~gGa~f~~~LP~~~~~~ 884 (890)
T COG2205 865 NN-PGGGAIFVFTLPVEEDPP 884 (890)
T ss_pred Ec-CCCceEEEEEeecCCCCc
Confidence 98 688999999999986654
No 2
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=1.4e-51 Score=481.61 Aligned_cols=472 Identities=13% Similarity=0.126 Sum_probs=373.1
Q ss_pred hhhHHHHHHHhhHhHHHHHHHhcC-CCCchHHHHHHHHHHHHHhhHHHHHHHH----------c-CchhHHHHHHHHHHH
Q 006513 50 VSDFLIAVAYFSIPVELLYFISCS-NVPFKWVLIQFIAFIVLCGLTHLLNGWT----------Y-GPHSFQLMLSLTVFK 117 (642)
Q Consensus 50 ~sd~~ia~a~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~ 117 (642)
+.|++++++.+++.+.+++++... +.+|..|+|++++++++.-+|..+++++ | .||+|+|. ++++.|
T Consensus 399 ~~~~~~a~~~~~~~t~l~~~l~~~l~~~ni~mlyll~Vll~A~~~G~~pai~aavls~l~~nfFF~~P~~Tf~-v~~~~~ 477 (895)
T PRK10490 399 IQGCLVAIALCALITLIAMQWLPAFDAANLVMLYLLGVVVVALFYGRWPSVVATVINVASFDLFFVAPRGTLA-VSDVQY 477 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHheeCCCceEEE-EcCccc
Confidence 568999999999999998877654 7799999999999888776666555544 3 55555554 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHhccchhhHHHHHHHHHH
Q 006513 118 ILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELS 197 (642)
Q Consensus 118 ~~t~~v~~~~ai~l~~l~~~~l~~~~~e~~l~~~~~~L~~e~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~ 197 (642)
++|+++|++++++++.+ +.+++++.+..++++++.+.|+++++.|+.+.+.+++++.+.+.+.
T Consensus 478 ~~t~~v~l~va~v~~~l-----------------~~r~r~~a~~a~~re~~~~~L~els~~L~~a~~~~~i~~~~~~~l~ 540 (895)
T PRK10490 478 LLTFAVMLTVGLVIGNL-----------------TAGVRYQARVARYREQRTRHLYEMSKALAVGLSPEDIAATSEHFLA 540 (895)
T ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999 7888888888999999999999999999999999999999999999
Q ss_pred hHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcCCeeEeCCCcchhhccCCCcccCCceeEE
Q 006513 198 NTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAI 277 (642)
Q Consensus 198 ~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 277 (642)
+.++++ +++|++++++......... ...+.+.....+++....+ .+ .+....+...+.
T Consensus 541 ~~~~~~-~~l~l~~~~g~~~~~~~~~---------~~~~~~~~~~~w~~~~~~~--------~g----~~~~tl~~~~~~ 598 (895)
T PRK10490 541 STFQAR-SQLLLPDDNGKLQPLTHDQ---------GMTPWDDAIARWSFDKGQP--------AG----AGTDTLPGVPYQ 598 (895)
T ss_pred HhhCCC-EEEEEEcCCCccccccccc---------cccchHHHHHHHHHhcCCc--------cc----cCcCcCCCCceE
Confidence 999985 6788887654321110000 0011111112222222211 11 111123445688
Q ss_pred EecceeccccCCCcchhhccceeeEEEEeeCCC-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 278 RMPMLRVSNFKGGTPELVSACYAILVLVLPNEQ-FRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRAL 356 (642)
Q Consensus 278 ~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~-~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L 356 (642)
++|+...++. +|++++.... ...|++++.++++.++.|++.++++..+.++.++.+
T Consensus 599 ~lPl~~~~~~-------------~Gvl~l~~~~~~~~~~~~~~~ll~~la~~~a~aler~~l~~~~~~~~---------- 655 (895)
T PRK10490 599 ILPLKSAQKT-------------YGLLAVEPGNLRQLMIPEQQRLLETFTLLIANALERLTLTASEEQAR---------- 655 (895)
T ss_pred EEEEEECCEE-------------EEEEEEecCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 8998866655 6688877654 457899999999999999999998876543311111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 006513 357 QQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN--LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (642)
Q Consensus 357 ~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~--~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~ 434 (642)
...+.++.+++|++.++|||||||++|.|+++++.... ...+..+.++.+.+...++.+++++++++++++.+
T Consensus 656 -----l~~e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~ 730 (895)
T PRK10490 656 -----LASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSG 730 (895)
T ss_pred -----HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 11122566788999999999999999999999886432 23334567899999999999999999999999999
Q ss_pred CccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEe
Q 006513 435 RFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE 514 (642)
Q Consensus 435 ~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~ 514 (642)
...++..++++.+++++++..++.....++ +.+++++++| .+.+|+.++.||+.||++||+||+++++.|.|++...
T Consensus 731 ~~~l~~~~~~L~eli~~~l~~l~~~~~~~~--i~l~~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~ 807 (895)
T PRK10490 731 GFNLRKEWLTLEEVVGSALQMLEPGLSGHP--INLSLPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE 807 (895)
T ss_pred CCcccccccCHHHHHHHHHHHHHHHhcCCC--EEEEcCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe
Confidence 999999999999999999999888777664 4555667766 6999999999999999999999999999999998766
Q ss_pred cCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC-CCCCCccchHHHHHHHHHHcCCEEEE
Q 006513 515 NGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQLMQGNIWM 593 (642)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~v 593 (642)
++. +.|+|.|+|+|||++..+++|++|++... +...|+||||+|||++++.|||+|++
T Consensus 808 ~~~---------------------v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~~~~G~GLGL~Ivk~ive~hGG~I~v 866 (895)
T PRK10490 808 GER---------------------LQLDVWDNGPGIPPGQEQLIFDKFARGNKESAIPGVGLGLAICRAIVEVHGGTIWA 866 (895)
T ss_pred CCE---------------------EEEEEEECCCCCCHHHHHHhcCCCccCCCCCCCCCccHHHHHHHHHHHHcCCEEEE
Confidence 544 89999999999999999999999998654 33469999999999999999999999
Q ss_pred EecCCCCceEEEEEEEeecCC
Q 006513 594 VPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 594 ~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
+|. +|+||+|+|.||+..++
T Consensus 867 ~s~-~~~Gt~f~i~LPl~~~~ 886 (895)
T PRK10490 867 ENR-PEGGACFRVTLPLETPP 886 (895)
T ss_pred EEC-CCCeEEEEEEeECCCCC
Confidence 999 58899999999986443
No 3
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=2.2e-40 Score=388.53 Aligned_cols=462 Identities=12% Similarity=0.128 Sum_probs=324.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHhccchh--hHHH
Q 006513 113 LTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRH--TILY 190 (642)
Q Consensus 113 ~~~~~~~t~~v~~~~ai~l~~l~~~~l~~~~~e~~l~~~~~~L~~e~~~~~~~~~~~~~l~~lt~~i~~~ld~~--~il~ 190 (642)
.+...++..+++++.++.++.+ +..+++..+.++++.+..+.+..++..+..+.+.+ ..++
T Consensus 237 ~~~~Rl~l~~~~~~~~~~~~~l-----------------~~~~~~~~~~l~~r~~~e~~l~~l~~~~~~~~~~~~~~~~~ 299 (828)
T PRK13837 237 ARRVRLFLGAVSVALLGYIISL-----------------VLRLRARTRVLRRRAAFEEVIAAISRCFEAASPHELEASIE 299 (828)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3444555555566666666655 45566666677777788888999999888776554 8899
Q ss_pred HHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccC-ChhHHHHHhcCCeeEeC-CCcchhhccCCCc
Q 006513 191 TTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPIT-DQDVVRIKGSDGVNILG-PDSELAAASSGES 268 (642)
Q Consensus 191 ~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~ 268 (642)
.++..+.+.++++.|++++.+.++....... .+... ....+.. ...+..........+.. .+... ......
T Consensus 300 ~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 372 (828)
T PRK13837 300 AALGILAKFFDADSAALALVDVGGRARIWTF--PGLTP---DPVWPDRLRALASTVKAAERDVVFVDRNGPV--RKRSCL 372 (828)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCeeeccC--CccCC---CCCchHHHHHHHHHHhccCCceEEeecccch--hhhccc
Confidence 9999999999999999998887664433111 00000 0000000 01112222222222221 11111 111112
Q ss_pred ccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCC-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 269 VESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQ-FRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMRE 347 (642)
Q Consensus 269 ~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~-~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~ 347 (642)
...++..++++|+...+.. +|++++.... ...+..++..+++.++++++.++++.+..++.+++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~-------------~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~ 439 (828)
T PRK13837 373 TRRGPALWACLAFKSGDRI-------------VALLGLGRQRYGLRPPAGELQLLELALDCLAHAIERRRLETERDALER 439 (828)
T ss_pred ccCCcceEEEEEeccCCce-------------EEEEEecccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456788999998765554 4566655443 3345689999999999999999988877666554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 348 KLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV-NLNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 348 ~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
++++ +++ .++.++|++++|||+||||++|.++++++.+. ..+++.+++++.|.++++++.+++++++
T Consensus 440 ~l~~-------~~r-----l~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll 507 (828)
T PRK13837 440 RLEH-------ARR-----LEAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQIL 507 (828)
T ss_pred HHHH-------HHH-----HHHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 211 33567899999999999999999999988753 3445678899999999999999999999
Q ss_pred hhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCE
Q 006513 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++...+ ..+++++.+++++++..++... .+++.+.++.+++.+ .+.+|+..+.||+.||++||+||++++|.
T Consensus 508 ~~sr~~~~----~~~~~~l~~ll~~~~~~~~~~~-~~~i~l~~~~~~~~~-~v~~d~~~L~qvl~NLl~NAik~~~~~g~ 581 (828)
T PRK13837 508 AFGRKGER----NTKPFDLSELVTEIAPLLRVSL-PPGVELDFDQDQEPA-VVEGNPAELQQVLMNLCSNAAQAMDGAGR 581 (828)
T ss_pred HHhCCCCC----CCcEEcHHHHHHHHHHHHHHHc-cCCcEEEEEeCCCCc-eEEECHHHHHHHHHHHHHHHHHHcccCCe
Confidence 99986543 4569999999999998887543 467888888776644 79999999999999999999999999999
Q ss_pred EEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHH
Q 006513 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQL 586 (642)
Q Consensus 507 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~ 586 (642)
|.|++.......... .......++.++.|.|+|+|+|||++..+++|++|++++. +|+|+||+|||++++.
T Consensus 582 I~I~~~~~~~~~~~~------~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---~G~GLGL~i~~~iv~~ 652 (828)
T PRK13837 582 VDISLSRAKLRAPKV------LSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---GGTGLGLATVHGIVSA 652 (828)
T ss_pred EEEEEEEeecccccc------cccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC---CCCcchHHHHHHHHHH
Confidence 999987652211000 0000112355699999999999999999999999997643 6999999999999999
Q ss_pred cCCEEEEEecCCCCceEEEEEEEeecCCCCCCCCCCCCCCCCCccCCCCCcccccC
Q 006513 587 MQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 587 ~gG~I~v~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~l~~~~iliv~ 642 (642)
|||+|+++|. +|+||+|+|+||....++... .....+......++.+|||||
T Consensus 653 ~gG~i~v~s~-~g~Gt~f~i~LP~~~~~~~~~---~~~~~~~~~~~~~~~~ILvVd 704 (828)
T PRK13837 653 HAGYIDVQST-VGRGTRFDVYLPPSSKVPVAP---QAFFGPGPLPRGRGETVLLVE 704 (828)
T ss_pred CCCEEEEEec-CCCeEEEEEEEeCCCCCCCCc---cccCCCcccCCCCCCEEEEEc
Confidence 9999999999 699999999999865432211 111122233335678899987
No 4
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-41 Score=331.16 Aligned_cols=226 Identities=15% Similarity=0.238 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHH--HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeee
Q 006513 367 SQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSD--QRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFR 444 (642)
Q Consensus 367 ~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~--~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~ 444 (642)
++.+..|.+++||||||||+++.++++.|.+....+. ...++..-.++.+||.++++||+..||++....++++++++
T Consensus 222 e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~in 301 (459)
T COG5002 222 ERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWIN 301 (459)
T ss_pred HHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHH
Confidence 5567889999999999999999999999998765444 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCe-EEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCcccc
Q 006513 445 LHAMIKEAACLARCLSIYRGFG-FSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDK 523 (642)
Q Consensus 445 L~~li~~~~~~~~~~~~~~~i~-~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~ 523 (642)
+...+..+++.+....++.... +.-+++.. |.+|..|+.++.||+.|+++||+||+|+||+|++++...++.
T Consensus 302 ft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~-~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~------ 374 (459)
T COG5002 302 FTAFLNEIINRFEMILKKETIARFVRDIPKQ-DIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRETW------ 374 (459)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhcCCCC-ceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCcE------
Confidence 9999999999998876555443 44445544 668999999999999999999999999999999999875443
Q ss_pred ccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC---CCCCCccchHHHHHHHHHHcCCEEEEEecCCCC
Q 006513 524 KWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGF 600 (642)
Q Consensus 524 ~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~ 600 (642)
+.++|+|+|.|||.++.+++|++|||... ++.+|+||||+|+|.||+.|||.||++|. .|+
T Consensus 375 ---------------v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~-~gk 438 (459)
T COG5002 375 ---------------VEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESE-EGK 438 (459)
T ss_pred ---------------EEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEEecc-cCC
Confidence 99999999999999999999999998543 56789999999999999999999999999 799
Q ss_pred ceEEEEEEEeecCCC
Q 006513 601 AQSMGLVLRFQLRPS 615 (642)
Q Consensus 601 Gt~f~i~LP~~~~~~ 615 (642)
||+|+|+||....+.
T Consensus 439 gtt~~ftLPy~~~~~ 453 (459)
T COG5002 439 GTTFSFTLPYSGEAG 453 (459)
T ss_pred ceEEEEEecccCccc
Confidence 999999999876543
No 5
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=100.00 E-value=1.8e-37 Score=356.61 Aligned_cols=442 Identities=16% Similarity=0.120 Sum_probs=309.1
Q ss_pred CchHHHHHHHHHHHHHhhHHHHHHHHc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 006513 76 PFKWVLIQFIAFIVLCGLTHLLNGWTY-----GPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKK 150 (642)
Q Consensus 76 ~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~t~~v~~~~ai~l~~l~~~~l~~~~~e~~l~~ 150 (642)
..+.++|-..+.+++..+--.+++..+ ..+.-. +....-++.+++.+++++...++
T Consensus 224 ~sr~~~~~~~~~~~~g~yl~~~~~~~~~~~~~gg~~~~---~~~~~~~~~~~~~~~~~~~s~~l---------------- 284 (679)
T TIGR02916 224 VSREMAFHSATLLGAGLYLLAMAGAGYYLRYFGGEWGD---AFQLAFLFAAGLLLAVLLFSGTL---------------- 284 (679)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHH---HHHHHHHHHHHHHHHHHHhhHHH----------------
Confidence 445666555555554443334444332 222222 12444455666666677777777
Q ss_pred HHHHhhHHHHHHHHHH--HhhhHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCC
Q 006513 151 KAWDLGREVGIIMKQK--EAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNY 228 (642)
Q Consensus 151 ~~~~L~~e~~~~~~~~--~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~ 228 (642)
..+++..+.+...++ +--..+..+++.++++.|.+++++.+++.+.+.++++.+++|+.++++..+.....++...
T Consensus 285 -r~~l~~~~~k~~~~~~~dyr~~~l~~~~~L~~~~~~~~l~~~~~~~l~~~l~~~~g~l~l~~~~~~~~~~~~~~~~~~- 362 (679)
T TIGR02916 285 -RARLRVFISKHFFRYKYDYREEWLRFTQTLSEARSSDDLGERVIRALAQLVESPGGVLWLKSGNDGLYRPAARWNQPL- 362 (679)
T ss_pred -HHHHHHHHHHhccccccchHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCCCCceEEEEcCCCCEEeeehhcCCCC-
Confidence 344444443322111 1112236788999999999999999999999999999999999988776565554443322
Q ss_pred CCCCCccccCChhHHHHHhcCCeeEeCCCcchhhcc----CCCcccCCceeEEEecceeccccCCCcchhhccceeeEEE
Q 006513 229 SDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAAS----SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVL 304 (642)
Q Consensus 229 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl 304 (642)
.....+.+.+.......++.+..+++........ ........+.+++++|+...++. +|++
T Consensus 363 --~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vPL~~~~~~-------------~G~l 427 (679)
T TIGR02916 363 --AQAFEPSDSAFCQFLQESGWIINLEEARSEPDHYSGLVLPEWLREIPNAWLIVPLISGEEL-------------VGFV 427 (679)
T ss_pred --cccCCCCCCHHHHHHHhCCCcccchhhcCCcccccccccchhhhcCCCceEEEEeccCCEE-------------EEEE
Confidence 1123444455555555444433322211111100 01111233567899999876665 5677
Q ss_pred EeeCC-CccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 006513 305 VLPNE-QFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRR 383 (642)
Q Consensus 305 ~l~~~-~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrt 383 (642)
++..+ ..+.|+.++.++++.+++|++.++++.+..++..+ +++ .+..+++.+.++||+||
T Consensus 428 ~l~~~~~~~~~~~e~~~lL~~l~~q~a~~l~~~~~~~~l~~--------------~~~-----~~~~~~~~a~i~HdLrn 488 (679)
T TIGR02916 428 VLARPRTAGEFNWEVRDLLKTAGRQAASYLAQMEASEALAE--------------ARQ-----FEAFNRMSAFVVHDLKN 488 (679)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH-----HHHHHHHHHHHHHHhcc
Confidence 77665 45689999999999999999999988776544221 111 12345678899999999
Q ss_pred hHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhh
Q 006513 384 PMHSILGLLSIMQDVNLNS-DQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIY 462 (642)
Q Consensus 384 PL~~I~g~~~lL~~~~~~~-~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~ 462 (642)
|++.+....+...+...++ .++++++.+.+..+++.++++++.+... +.+..++++.++++++.+..+.
T Consensus 489 ~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~~------~~~~~~~~l~~ll~~~~~~~~~---- 558 (679)
T TIGR02916 489 LVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKGL------EEEKLCVDLVDLLRRAIASKRA---- 558 (679)
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccCCccccHHHHHHHHHHHhhh----
Confidence 9999998888776544444 4567889999999999999988765432 4556789999999998876543
Q ss_pred cCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEE
Q 006513 463 RGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFE 542 (642)
Q Consensus 463 ~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 542 (642)
.+..++++++++ + .+.+|+..+.|++.||++||+||++++++|+|++...++. +.++
T Consensus 559 ~~~~~~l~~~~~-~-~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~~---------------------~~i~ 615 (679)
T TIGR02916 559 QGPRPEVSIDTD-L-SVRADRERLERVLGHLVQNALEATPGEGRVAIRVERECGA---------------------ARIE 615 (679)
T ss_pred hcCCceEEeCCC-c-eEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCE---------------------EEEE
Confidence 233444555544 3 5999999999999999999999998899999999876543 8999
Q ss_pred EEECCCCCCcch-hhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEE
Q 006513 543 ILLNEVGSQPEV-STSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLR 609 (642)
Q Consensus 543 V~D~G~Gi~~e~-~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP 609 (642)
|+|||+|||++. .+++|++|++++. +|+|+||++||++++.|||+|+++|+ +|+||+|+++||
T Consensus 616 V~D~G~Gi~~~~i~~~lF~pf~~~~~---~G~GLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~f~i~LP 679 (679)
T TIGR02916 616 IEDSGCGMSPAFIRERLFKPFDTTKG---AGMGIGVYECRQYVEEIGGRIEVEST-PGQGTIFTLVLP 679 (679)
T ss_pred EEEcCCCcChHHHHHhcCCCCCCCCC---CCcchhHHHHHHHHHHcCCEEEEEec-CCCceEEEEEeC
Confidence 999999999999 9999999987543 69999999999999999999999999 599999999998
No 6
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=1.1e-37 Score=365.21 Aligned_cols=251 Identities=20% Similarity=0.328 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeee
Q 006513 365 MASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFR 444 (642)
Q Consensus 365 ~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~ 444 (642)
++++.+++|++.||||+||||++|.|+++++.+...+++++++++.|..+++++..++++++++++++.+..++++.+++
T Consensus 278 ~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~~ 357 (779)
T PRK11091 278 KASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQPID 357 (779)
T ss_pred HHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeeccC
Confidence 33567789999999999999999999999998888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccc
Q 006513 445 LHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKK 524 (642)
Q Consensus 445 L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~ 524 (642)
+.++++++...+...+..+++.+.++.++++|..+.+|+.++.||+.||++||+||+ ++|.|.|++....+
T Consensus 358 l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~-~~g~v~i~~~~~~~-------- 428 (779)
T PRK11091 358 FTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFT-QQGGVTVRVRYEEG-------- 428 (779)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhC-CCCcEEEEEEEccC--------
Confidence 999999999999999999999999999888887799999999999999999999976 56678888876521
Q ss_pred cccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC----CCCCCccchHHHHHHHHHHcCCEEEEEecCCCC
Q 006513 525 WATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV----NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGF 600 (642)
Q Consensus 525 ~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~----~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~ 600 (642)
..+.|+|.|+|+|||++.++++|++|++.+. ...+|+||||+|||++|+.|||+|+++|. +|+
T Consensus 429 ------------~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~-~g~ 495 (779)
T PRK11091 429 ------------DMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSE-EGK 495 (779)
T ss_pred ------------CEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEec-CCC
Confidence 1289999999999999999999999998741 23569999999999999999999999999 699
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCCCCCCccCCCCCcccccC
Q 006513 601 AQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 601 Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~l~~~~iliv~ 642 (642)
||+|+|+||+...+.....+ +.......++.+|||||
T Consensus 496 Gt~f~i~lP~~~~~~~~~~~-----~~~~~~~~~~~~ILivd 532 (779)
T PRK11091 496 GSCFTLTIHAPAVAEEVEDA-----FDEDDMPLPALNILLVE 532 (779)
T ss_pred eEEEEEEEeccccccccccc-----cccccccccccceEEEc
Confidence 99999999997654322211 11112234567899987
No 7
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=1.7e-38 Score=368.07 Aligned_cols=263 Identities=16% Similarity=0.238 Sum_probs=226.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006513 352 QNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPK 431 (642)
Q Consensus 352 ~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~ 431 (642)
.+++++++++++++++++|++|+++|||||||||++|.|+++++.+...+++++++++.|.++++++.++++++++++|+
T Consensus 432 ~~~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrl 511 (894)
T PRK10618 432 VNKKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNML 511 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888888899999999999999999999999999999877778888999999999999999999999999999
Q ss_pred cCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEE
Q 006513 432 DSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRV 511 (642)
Q Consensus 432 e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~ 511 (642)
+.++.+++.+++++.+++++++..+...+..+++.+.++++.+.+..+.+|+.++.||+.||++||+||+ ++|.|.|++
T Consensus 512 e~~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t-~~G~I~I~v 590 (894)
T PRK10618 512 ETQDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTT-AYGKITLEV 590 (894)
T ss_pred hcCCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhC-CCCeEEEEE
Confidence 9999999999999999999999999999999999999888765566799999999999999999999965 467888888
Q ss_pred EEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC--CCCCCccchHHHHHHHHHHcCC
Q 006513 512 VSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV--NEGIEDRMSFSVCKKLVQLMQG 589 (642)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~--~~~~G~GLGL~i~k~iv~~~gG 589 (642)
....+ ...++.|+|.|+|+|||++.++++|+||++... +.++|+||||+|||++++.|||
T Consensus 591 ~~~~~------------------~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~k~Lve~~GG 652 (894)
T PRK10618 591 DQDES------------------SPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFLCNQLCRKLGG 652 (894)
T ss_pred EEccC------------------CCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHHHHHHHHHcCC
Confidence 75432 123489999999999999999999999998553 2346999999999999999999
Q ss_pred EEEEEecCCCCceEEEEEEEeecCCCCCCCCCCCCCCCCCccCCCCCcccccC
Q 006513 590 NIWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 590 ~I~v~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~l~~~~iliv~ 642 (642)
+|+++|. +|+||+|+|+||+...+.... ......+.|.||||||
T Consensus 653 ~I~v~S~-~g~GT~F~I~LPl~~~~~~~~--------~~~~~~l~g~~vLlvd 696 (894)
T PRK10618 653 HLTIKSR-EGLGTRYSIHLKMLAADPEVE--------EEEEKLLDGVTVLLDI 696 (894)
T ss_pred EEEEEEC-CCCcEEEEEEEEccCCccccc--------ccccccCCCCEEEEEe
Confidence 9999999 699999999999964322111 1112335778999985
No 8
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=2.2e-36 Score=323.96 Aligned_cols=236 Identities=14% Similarity=0.258 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 354 RALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLN-------SDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 354 ~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~-------~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
..++++++++.+..+.+++|++.+|||+||||++|.++++++.+...+ +..+++++.+.+..+++.+++++++
T Consensus 135 ~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll 214 (380)
T PRK09303 135 FVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLL 214 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666677889999999999999999999999999753221 3357889999999999999999999
Q ss_pred hhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCE
Q 006513 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++.+.+...++.+++++.+++++++..+...+..+++.+.++++.++| .+.+|+.++.||+.||++||+||++++|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik~~~~~~~ 293 (380)
T PRK09303 215 EVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIKYTPEGGT 293 (380)
T ss_pred HHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHhcCCCCce
Confidence 99999999888899999999999999999999999999999999988877 69999999999999999999999999999
Q ss_pred EEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC-CCCCCccchHHHHHHHHH
Q 006513 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQ 585 (642)
Q Consensus 507 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~ 585 (642)
|.+.+....+ .++.|.|.|+|+|||++..+++|++|++... ...+|+||||+|||++++
T Consensus 294 I~i~~~~~~~--------------------~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~~~~~~G~GLGL~i~~~iv~ 353 (380)
T PRK09303 294 ITLSMLHRTT--------------------QKVQVSICDTGPGIPEEEQERIFEDRVRLPRDEGTEGYGIGLSVCRRIVR 353 (380)
T ss_pred EEEEEEecCC--------------------CEEEEEEEEcCCCCCHHHHHHHccCceeCCCCCCCCcccccHHHHHHHHH
Confidence 9988754321 2389999999999999999999999998654 345699999999999999
Q ss_pred HcCCEEEEEecCCCCceEEEEEEEee
Q 006513 586 LMQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 586 ~~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
.|||+|+++|. +|+|++|+|+||+.
T Consensus 354 ~~gG~i~v~s~-~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 354 VHYGQIWVDSE-PGQGSCFHFTLPVY 378 (380)
T ss_pred HcCCEEEEEec-CCCccEEEEEEecC
Confidence 99999999999 58999999999975
No 9
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=1.1e-35 Score=355.09 Aligned_cols=271 Identities=23% Similarity=0.341 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 347 ~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
++++.++.++..++++++++++.+.+|++.+|||+||||++|.|+++.+.+...+++++++++.|.++++++.+++++++
T Consensus 270 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 349 (919)
T PRK11107 270 EQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDIL 349 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777888888899999999999999999999999999999998877888899999999999999999999999
Q ss_pred hhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCE
Q 006513 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++++.+...++..++++.+++++++..+...+..+++.+.++++++.|..+.+|+.++.||+.||++||+||++ +|.
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~-~g~ 428 (919)
T PRK11107 350 DFSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTE-SGN 428 (919)
T ss_pred HHHHHhcCCcEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCC-CCc
Confidence 9999999999999999999999999999999999999999999998888877999999999999999999999765 566
Q ss_pred EEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC---CCCCCccchHHHHHHH
Q 006513 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKL 583 (642)
Q Consensus 507 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~i 583 (642)
|.|++...... ++..++.|+|.|+|+|||++.++++|++|++... ++.+|+||||+|||++
T Consensus 429 v~i~v~~~~~~----------------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~i 492 (919)
T PRK11107 429 IDILVELRALS----------------NTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKL 492 (919)
T ss_pred EEEEEEEEecC----------------CCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHHH
Confidence 76666544321 1334589999999999999999999999997543 3456999999999999
Q ss_pred HHHcCCEEEEEecCCCCceEEEEEEEeecCCCCCCCCCCCCCCCCCccCCCCCcccccC
Q 006513 584 VQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 584 v~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~l~~~~iliv~ 642 (642)
++.|||+|+++|. +|+||+|+|+||+...+... ....+.+.+.|++|+|+|
T Consensus 493 ~~~~gG~i~v~s~-~~~Gt~f~i~lp~~~~~~~~-------~~~~~~~~~~g~~ili~d 543 (919)
T PRK11107 493 VNEMGGDISFHSQ-PNRGSTFWFHLPLDLNPNPI-------IDGLPTDCLAGKRLLYVE 543 (919)
T ss_pred HHHhCCEEEEEec-CCCCEEEEEEEEeccCCccc-------cccCCccccCCCeEEEEe
Confidence 9999999999999 69999999999997544321 112334567788999886
No 10
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=4e-36 Score=353.23 Aligned_cols=237 Identities=22% Similarity=0.340 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 006513 354 RALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDS 433 (642)
Q Consensus 354 ~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~ 433 (642)
++++++++++++++++++.|++.+||||||||++|.|++++++....+++++++++.|.++++++.++|++++++++++.
T Consensus 431 ~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~ 510 (924)
T PRK10841 431 ESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIES 510 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555666677778889999999999999999999999999988778888899999999999999999999999999999
Q ss_pred CCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEE
Q 006513 434 GRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVS 513 (642)
Q Consensus 434 ~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~ 513 (642)
+..+++.+++++.+++++++..+...+..+++.+.++++++.|..+.+|+.++.||+.||++||+||++ +|.|.|++..
T Consensus 511 ~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~-~G~I~I~v~~ 589 (924)
T PRK10841 511 EQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTD-TGCIVLHVRV 589 (924)
T ss_pred CCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEE
Confidence 999999999999999999999999999999999999998887777999999999999999999999764 5678888876
Q ss_pred ecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC---CCCCCccchHHHHHHHHHHcCCE
Q 006513 514 ENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKLVQLMQGN 590 (642)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~iv~~~gG~ 590 (642)
.++. +.|+|.|+|+||+++.++++|++|++... ...+|+||||+|||++++.|||+
T Consensus 590 ~~~~---------------------l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~ 648 (924)
T PRK10841 590 DGDY---------------------LSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGD 648 (924)
T ss_pred eCCE---------------------EEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCCCE
Confidence 5433 89999999999999999999999997543 33469999999999999999999
Q ss_pred EEEEecCCCCceEEEEEEEeecC
Q 006513 591 IWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 591 I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
|+++|. +|+||+|+|.||+...
T Consensus 649 I~v~S~-~g~Gt~F~i~LP~~~~ 670 (924)
T PRK10841 649 ISVDSE-PGMGSQFTIRIPLYGA 670 (924)
T ss_pred EEEEEc-CCCcEEEEEEEECCcc
Confidence 999999 6999999999998643
No 11
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=1.9e-35 Score=354.78 Aligned_cols=259 Identities=22% Similarity=0.398 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 006513 356 LQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGR 435 (642)
Q Consensus 356 L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~ 435 (642)
.++++++++++++++..|++.+||||||||++|.|+++++.+...+++++++++.|.++++++..++++++++++++.+.
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~ 529 (968)
T TIGR02956 450 HAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGH 529 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34556777888899999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred ccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEec
Q 006513 436 FPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSEN 515 (642)
Q Consensus 436 ~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~ 515 (642)
..++..++++.+++++++..+...+..+++.+.++++++.|..+.+|+.++.||+.||++||+||+ ++|.|.|++...+
T Consensus 530 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~-~~g~i~i~~~~~~ 608 (968)
T TIGR02956 530 LSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFT-DRGSVVLRVSLND 608 (968)
T ss_pred CeeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhC-CCCeEEEEEEEcC
Confidence 999999999999999999999999999999999999888787899999999999999999999975 5678888887653
Q ss_pred CCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC-CCCCCccchHHHHHHHHHHcCCEEEEE
Q 006513 516 GSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQLMQGNIWMV 594 (642)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~v~ 594 (642)
+. .+.|+|.|+|+|||++.++++|++|++... +..+|+||||+|||++++.|||+|+++
T Consensus 609 ~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~g~GLGL~i~~~l~~~~gG~i~~~ 668 (968)
T TIGR02956 609 DS--------------------SLLFEVEDTGCGIAEEEQATLFDAFTQADGRRRSGGTGLGLAISQRLVEAMDGELGVE 668 (968)
T ss_pred CC--------------------eEEEEEEeCCCCCCHHHHHHHHhhhhccCCCCCCCCccHHHHHHHHHHHHcCCEEEEE
Confidence 21 188999999999999999999999998664 234699999999999999999999999
Q ss_pred ecCCCCceEEEEEEEeecCCCCCCCCCCCCCCCCCccCCCCCcccccC
Q 006513 595 PSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 595 s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~l~~~~iliv~ 642 (642)
|. +|+||+|+|.||+...+.....+. .....+.+.+|||||
T Consensus 669 s~-~~~Gt~f~~~lp~~~~~~~~~~~~------~~~~~~~~~~iLvvd 709 (968)
T TIGR02956 669 SE-LGVGSCFWFTLPLTRGKPAEDSAT------LTVIDLPPQRVLLVE 709 (968)
T ss_pred ec-CCCcEEEEEEEEcCCCCccccccc------cccccccccceEEEc
Confidence 99 699999999999975443221111 122234667899987
No 12
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=3.2e-35 Score=351.06 Aligned_cols=245 Identities=18% Similarity=0.314 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 345 MREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISD 424 (642)
Q Consensus 345 ~~~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ 424 (642)
++++++++.+++++++++++++++.+..|++.+||||||||++|.|+++++.+...+++++++++.+.++++++..++++
T Consensus 373 l~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ 452 (921)
T PRK15347 373 LENKVAERTQALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINN 452 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888888888888999999999999999999999999999998888899999999999999999999999
Q ss_pred HHhhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCC
Q 006513 425 VMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR 504 (642)
Q Consensus 425 ll~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~ 504 (642)
++++++++.+...++.+++++.++++++...+...+..+++.+.+.+++++|..+.+|+.++.||+.||++||+||++ +
T Consensus 453 ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~-~ 531 (921)
T PRK15347 453 LLDFSRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTE-T 531 (921)
T ss_pred HHHHHHHhcCCccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCC-C
Confidence 999999999999999999999999999999999999999999999988888878999999999999999999999764 5
Q ss_pred CEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHH
Q 006513 505 GTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLV 584 (642)
Q Consensus 505 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv 584 (642)
|.|.|++...++. +.|+|+|+|+||+++.++++|++|++... ..+|+||||+|||+++
T Consensus 532 g~I~i~~~~~~~~---------------------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~g~GLGL~i~~~~~ 589 (921)
T PRK15347 532 GGIRLRVKRHEQQ---------------------LCFTVEDTGCGIDIQQQQQIFTPFYQADT-HSQGTGLGLTIASSLA 589 (921)
T ss_pred CCEEEEEEEcCCE---------------------EEEEEEEcCCCCCHHHHHHHhcCcccCCC-CCCCCchHHHHHHHHH
Confidence 6688888765443 99999999999999999999999998654 3469999999999999
Q ss_pred HHcCCEEEEEecCCCCceEEEEEEEeecC
Q 006513 585 QLMQGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 585 ~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
+.|||+|+++|. +|+||+|+|.||+...
T Consensus 590 ~~~gG~i~i~s~-~~~Gt~f~i~lp~~~~ 617 (921)
T PRK15347 590 KMMGGELTLFST-PGVGSCFSLVLPLNEY 617 (921)
T ss_pred HHcCCEEEEEec-CCCceEEEEEEECCCC
Confidence 999999999999 6999999999998653
No 13
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00 E-value=1e-33 Score=296.82 Aligned_cols=235 Identities=15% Similarity=0.258 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006513 353 NRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQD---VNLNSDQRMIVETMMKSSNVLSTLISDVMDNS 429 (642)
Q Consensus 353 ~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~---~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s 429 (642)
.+++.+.+.+++++|.....|...+|||||+||+.|.+++++|.+ +..+++.++++..+.+.+..+.++|++++.++
T Consensus 507 aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s 586 (750)
T COG4251 507 AEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYS 586 (750)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444555556677778888899999999999999999999999975 45788999999999999999999999999999
Q ss_pred cccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCC-CEEE
Q 006513 430 PKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR-GTVL 508 (642)
Q Consensus 430 r~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~-g~i~ 508 (642)
++..-. ...++.|+.+++.+++..+.......++.+.+ .+ +| .+.+|+.++.||+.||+.||+||..++ ..|.
T Consensus 587 ~l~~~~--~~l~~td~~~vv~~vl~~l~~ri~dtgaei~i--~~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~ 660 (750)
T COG4251 587 KLGLTE--APLQPTDVQKVVDKVLLELSQRIADTGAEIRI--AP-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIE 660 (750)
T ss_pred hhcccc--CCCCCcchHHHHHHHHHhcccccccccceEEe--cc-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceE
Confidence 985544 44558999999999999999988888887776 34 78 699999999999999999999986655 7788
Q ss_pred EEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC-CCCCCccchHHHHHHHHHHc
Q 006513 509 FRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQLM 587 (642)
Q Consensus 509 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~ 587 (642)
|+....++. +.+.|.|||.||+++..+++|..|.|..+ ....|+|+||+|||+|+|.|
T Consensus 661 I~~~r~ed~---------------------~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H 719 (750)
T COG4251 661 ISAERQEDE---------------------WTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERH 719 (750)
T ss_pred EeeeccCCc---------------------eEEEecCCCCCcCHHHHHHHHHHHHhcCchhhhcCCCccHHHHHHHHHHh
Confidence 887666555 88999999999999999999999988665 45679999999999999999
Q ss_pred CCEEEEEecCCCCceEEEEEEEeecCCC
Q 006513 588 QGNIWMVPSSHGFAQSMGLVLRFQLRPS 615 (642)
Q Consensus 588 gG~I~v~s~~~g~Gt~f~i~LP~~~~~~ 615 (642)
+|+||++|+ +|+|+||.|++|.....+
T Consensus 720 ~G~i~vEs~-~gEgsTF~f~lp~~~~e~ 746 (750)
T COG4251 720 QGRIWVEST-PGEGSTFYFTLPVGGEEP 746 (750)
T ss_pred CceEEEeec-CCCceeEEEEeecCCcCc
Confidence 999999999 599999999999876543
No 14
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=4.2e-35 Score=349.61 Aligned_cols=272 Identities=20% Similarity=0.294 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Q 006513 341 ESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLST 420 (642)
Q Consensus 341 e~~~~~~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~ 420 (642)
..+....++++...++++++++.+++++++..|++.+|||+||||++|.|+++++.+...+++++++++.|.++++++..
T Consensus 415 ~v~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~ 494 (914)
T PRK11466 415 QVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLT 494 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566677777888888999999999999999999999999999998877888889999999999999999
Q ss_pred HHHHHHhhccccCCC--ccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhh
Q 006513 421 LISDVMDNSPKDSGR--FPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLL 498 (642)
Q Consensus 421 li~~ll~~sr~e~~~--~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAi 498 (642)
++++++++++++.+. ..++.+++++.+++++++..+...+..+++.+.+++++++|..+.+|+.++.||+.||++||+
T Consensus 495 li~~ll~~s~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAi 574 (914)
T PRK11466 495 ILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNAL 574 (914)
T ss_pred HHHHHHHHHHHhCCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHH
Confidence 999999999998774 566778999999999999999999999999999999888787799999999999999999999
Q ss_pred cccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHH
Q 006513 499 NCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFS 578 (642)
Q Consensus 499 k~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~ 578 (642)
||+ ++|.|.|++...++. +.|.|.|+|+|||++..+++|+||++... +.+|+||||+
T Consensus 575 k~~-~~g~I~i~~~~~~~~---------------------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~g~GLGL~ 631 (914)
T PRK11466 575 RFT-DEGSIVLRSRTDGEQ---------------------WLVEVEDSGCGIDPAKLAEIFQPFVQVSG-KRGGTGLGLT 631 (914)
T ss_pred HhC-CCCeEEEEEEEcCCE---------------------EEEEEEECCCCCCHHHHHHHhchhhcCCC-CCCCCcccHH
Confidence 975 567888888765433 88999999999999999999999997643 4469999999
Q ss_pred HHHHHHHHcCCEEEEEecCCCCceEEEEEEEeecCCCCCCCCCCCCCCCCCccCCCCCcccccC
Q 006513 579 VCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 579 i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~l~~~~iliv~ 642 (642)
|||++++.|||+|+++|. +|+||+|+|.||+......+... ........+.+|||||
T Consensus 632 i~~~l~~~~gG~i~v~s~-~~~Gt~f~i~lP~~~~~~~~~~~------~~~~~~~~~~~vLivd 688 (914)
T PRK11466 632 ISSRLAQAMGGELSATST-PEVGSCFCLRLPLRVATAPVPKT------VNQAVRLDGLRLLLIE 688 (914)
T ss_pred HHHHHHHHcCCEEEEEec-CCCCeEEEEEEEccccccccccc------cccccccCCcceEEEe
Confidence 999999999999999999 58999999999987543322111 1112234577899987
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=300.74 Aligned_cols=220 Identities=20% Similarity=0.223 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHH
Q 006513 368 QARNAFQKVMSNGMRRPMHSILGLLSIMQDVNL-NSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLH 446 (642)
Q Consensus 368 ~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~ 446 (642)
+++.+|++.++||+||||++|.++++++.+... ++..+++++.|.+.++++..++++++++++.+.+.......++++.
T Consensus 202 ~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~ 281 (430)
T PRK11006 202 GARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVP 281 (430)
T ss_pred HHHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHH
Confidence 345679999999999999999999999886543 4556789999999999999999999999999887766667889999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccc
Q 006513 447 AMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWA 526 (642)
Q Consensus 447 ~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~ 526 (642)
.+++.+........ .+++.+.+++++++ .+.+|+.++.|++.||++||+||+++++.|.|++...++.
T Consensus 282 ~~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~~--------- 349 (430)
T PRK11006 282 MMLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPQG--------- 349 (430)
T ss_pred HHHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCE---------
Confidence 99988777665554 66788888877664 4899999999999999999999998889999988765433
Q ss_pred cccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC---CCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceE
Q 006513 527 TWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQS 603 (642)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~ 603 (642)
+.|+|.|+|+|||++..+++|++||+... ++.+|+||||+|||++++.|||+|+++|. +|+||+
T Consensus 350 ------------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~-~~~Gt~ 416 (430)
T PRK11006 350 ------------AEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESE-VGKGTR 416 (430)
T ss_pred ------------EEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEec-CCCceE
Confidence 88999999999999999999999997543 33469999999999999999999999999 689999
Q ss_pred EEEEEEeec
Q 006513 604 MGLVLRFQL 612 (642)
Q Consensus 604 f~i~LP~~~ 612 (642)
|+|+||...
T Consensus 417 f~i~lP~~~ 425 (430)
T PRK11006 417 FSFVLPERL 425 (430)
T ss_pred EEEEechHh
Confidence 999999754
No 16
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=2.1e-32 Score=334.83 Aligned_cols=266 Identities=16% Similarity=0.265 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 006513 356 LQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSD-QRMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (642)
Q Consensus 356 L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~-~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~ 434 (642)
++++++++.++++++++|++.+||||||||++|.|+++++.+...+++ ..++++.+..+++++..++++++++++++.+
T Consensus 698 l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~ 777 (1197)
T PRK09959 698 LEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESG 777 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 334444455556788999999999999999999999999976555444 4578999999999999999999999999999
Q ss_pred CccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEe
Q 006513 435 RFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE 514 (642)
Q Consensus 435 ~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~ 514 (642)
...+..+++++.+++++++..++..+..+++.+.+..+...+..+.+|+.++.||+.||++||+||+++ |.+.+.+...
T Consensus 778 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~-g~i~i~~~~~ 856 (1197)
T PRK09959 778 NYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTE-GAVKITTSLG 856 (1197)
T ss_pred CceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCC-CCEEEEEEEe
Confidence 999999999999999999999999999999988876542223369999999999999999999998764 4555555432
Q ss_pred cCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC-CCCCCccchHHHHHHHHHHcCCEEEE
Q 006513 515 NGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQLMQGNIWM 593 (642)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~v 593 (642)
... ++...+.|+|.|+|+|||++..+++|++|+++.. ...+|+||||+|||++++.|||+|++
T Consensus 857 ~~~----------------~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v 920 (1197)
T PRK09959 857 HID----------------DNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSL 920 (1197)
T ss_pred eec----------------CCceEEEEEEEEcCCCCCHHHHHHhhccccccccCCCCCCcCchHHHHHHHHHHcCCEEEE
Confidence 111 1334588999999999999999999999998654 34469999999999999999999999
Q ss_pred EecCCCCceEEEEEEEeecCCCCCCCCCCCCCCCCCccCCCCCcccccC
Q 006513 594 VPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 594 ~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~l~~~~iliv~ 642 (642)
+|. +|+||+|+|.||+..........+.... +.......+|||||
T Consensus 921 ~s~-~~~Gt~f~i~lP~~~~~~~~~~~~~~~~---~~~~~~~~~iLivd 965 (1197)
T PRK09959 921 ESH-PGIGTTFTITIPVEISQQVATVEAKAEQ---PITLPEKLSILIAD 965 (1197)
T ss_pred EeC-CCCcEEEEEEEEccccchhccccccccc---ccccccCceEEEcC
Confidence 999 5999999999998754332211111111 11123456899987
No 17
>PRK10364 sensor protein ZraS; Provisional
Probab=100.00 E-value=1.4e-29 Score=278.65 Aligned_cols=214 Identities=15% Similarity=0.267 Sum_probs=190.3
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHH
Q 006513 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHA 447 (642)
Q Consensus 369 ~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~ 447 (642)
..+++.+.++||+||||++|.++++++.+.. ..++.+++++.+.+.++++.+++++++++++.. .....++++.+
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 4567899999999999999999999987643 345667888999999999999999999998843 34567999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCcccccccc
Q 006513 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWAT 527 (642)
Q Consensus 448 li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~ 527 (642)
++++++..+...+.++++.++++.+++.+ .+.+|+.++.|++.||++||+||.++++.|.|++...++.
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~---------- 380 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGAG---------- 380 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCe----------
Confidence 99999999999999999999999887666 5899999999999999999999988889999998876544
Q ss_pred ccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEE
Q 006513 528 WRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
+.|+|+|+|+|||++..+++|++|++++ .+|+|+||++||++++.|||+|+++|. +|+||+|++.
T Consensus 381 -----------~~i~V~D~G~Gi~~~~~~~if~~~~~~k---~~g~GlGL~iv~~~v~~~gG~i~i~s~-~~~Gt~f~i~ 445 (457)
T PRK10364 381 -----------VKISVTDSGKGIAADQLEAIFTPYFTTK---AEGTGLGLAVVHNIVEQHGGTIQVASQ-EGKGATFTLW 445 (457)
T ss_pred -----------EEEEEEECCCCCCHHHHHHHhCccccCC---CCCCcccHHHHHHHHHHCCCEEEEEeC-CCCcEEEEEE
Confidence 9999999999999999999999998654 458999999999999999999999999 5899999999
Q ss_pred EEeec
Q 006513 608 LRFQL 612 (642)
Q Consensus 608 LP~~~ 612 (642)
||...
T Consensus 446 lP~~~ 450 (457)
T PRK10364 446 LPVNI 450 (457)
T ss_pred ecCCC
Confidence 99863
No 18
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=100.00 E-value=1.5e-31 Score=296.37 Aligned_cols=216 Identities=13% Similarity=0.120 Sum_probs=170.7
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHH
Q 006513 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (642)
Q Consensus 369 ~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~l 448 (642)
...+++..++||+||||+.|.++++++.+...+.......+.+.+......+.++.+.++.. ........++|+.++
T Consensus 275 ~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~dl~~~ 351 (494)
T TIGR02938 275 AIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP---QSPQEIVVPVNLNQI 351 (494)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc---cCcccccccccHHHH
Confidence 34567788889999999999999999875432222233333333334444444444444332 122344578999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCC----EEEEEEEEecCCCCccccc
Q 006513 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG----TVLFRVVSENGSQDRNDKK 524 (642)
Q Consensus 449 i~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g----~i~i~~~~~~~~~~~~~~~ 524 (642)
+++++..+...+..+++.+.++.++++| .+.+|+.++.||+.||++||+||+++++ .|.+.....++
T Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~-------- 422 (494)
T TIGR02938 352 LRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALNGD-------- 422 (494)
T ss_pred HHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCC--------
Confidence 9999999998889999999998888877 6999999999999999999999977763 45555544333
Q ss_pred cccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEE
Q 006513 525 WATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSM 604 (642)
Q Consensus 525 ~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f 604 (642)
.+.|+|+|||+|||++...++|++|++++....+|+||||+|||++|+.|||+|+++|. +|+||+|
T Consensus 423 -------------~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~G~GlGL~i~~~iv~~~gG~i~~~s~-~~~G~~f 488 (494)
T TIGR02938 423 -------------LIVVSILDSGPGIPQDLRYKVFEPFFTTKGGSRKHIGMGLSVAQEIVADHGGIIDLDDD-YSEGCRI 488 (494)
T ss_pred -------------EEEEEEEeCCCCCCHHHHHHhcCCCcccCCCCCCCCcccHHHHHHHHHHcCCEEEEEEC-CCCCEEE
Confidence 38999999999999999999999999877655679999999999999999999999999 5999999
Q ss_pred EEEEEe
Q 006513 605 GLVLRF 610 (642)
Q Consensus 605 ~i~LP~ 610 (642)
+|+||+
T Consensus 489 ~i~lp~ 494 (494)
T TIGR02938 489 IVEFRV 494 (494)
T ss_pred EEEecC
Confidence 999995
No 19
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-31 Score=277.50 Aligned_cols=214 Identities=14% Similarity=0.181 Sum_probs=190.3
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHH---HhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeH
Q 006513 369 ARNAFQKVMSNGMRRPMHSILGLLSI---MQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRL 445 (642)
Q Consensus 369 ~~~~~l~~~sHelrtPL~~I~g~~~l---L~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L 445 (642)
+.+++.++++||+++||++|.++++. |.+....++.++.+..|..-.+||-.+.++|-.|+|...+. ..++.+
T Consensus 383 ~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l 458 (603)
T COG4191 383 ALGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSL 458 (603)
T ss_pred HHHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccH
Confidence 45778899999999999999998875 44667788889999999999999999999999999975543 468999
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhccc--CCCCEEEEEEEEecCCCCcccc
Q 006513 446 HAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCN--SRRGTVLFRVVSENGSQDRNDK 523 (642)
Q Consensus 446 ~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~--~~~g~i~i~~~~~~~~~~~~~~ 523 (642)
.++|++++..+....+..+..+..+.++..+ +|++|+.+|+||+.|||.||+++. ++.+.|.|++..+++.
T Consensus 459 ~~ai~~Al~ll~~R~~~~~~~l~~~~~~~~~-~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~------ 531 (603)
T COG4191 459 REAIEGALELLRGRLRAAGVELELDLPDAPL-WVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQ------ 531 (603)
T ss_pred HHHHHHHHHHHHHhhhccCceeeccCCCCCc-eeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCe------
Confidence 9999999999999999999999998876534 899999999999999999999974 4567888888877665
Q ss_pred ccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceE
Q 006513 524 KWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQS 603 (642)
Q Consensus 524 ~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~ 603 (642)
+.++|.||||||+++...++|+||++++. .++|.||||+||+.|++.+||+|.+.+. ++.|+.
T Consensus 532 ---------------v~l~VrDnGpGi~~e~~~~lFePF~TtK~-~~~GLGLGLaIS~~i~~d~GGsL~v~n~-~~~Ga~ 594 (603)
T COG4191 532 ---------------VVLTVRDNGPGIAPEALPHLFEPFFTTKP-VGKGLGLGLAISQNIARDLGGSLEVANH-PEGGAS 594 (603)
T ss_pred ---------------EEEEEccCCCCCCHHHHHhhcCCccccCc-ccCCcchhHHHHHHHHHHhCCeEEeecC-CCCceE
Confidence 99999999999999999999999998764 3559999999999999999999999988 588999
Q ss_pred EEEEEEe
Q 006513 604 MGLVLRF 610 (642)
Q Consensus 604 f~i~LP~ 610 (642)
|+|.||.
T Consensus 595 F~i~L~~ 601 (603)
T COG4191 595 FTIELRR 601 (603)
T ss_pred EEEEeec
Confidence 9999984
No 20
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-31 Score=257.26 Aligned_cols=223 Identities=15% Similarity=0.268 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHH
Q 006513 368 QARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHA 447 (642)
Q Consensus 368 ~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~ 447 (642)
++-..+.++++||+||||..|.|.+++|...-.++..++|.+-|.++++|+.++++.+.-++. ..+....|+++++
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHH
Confidence 455678899999999999999999999997766666899999999999999999999865543 3355667999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccC----CCCEEEEEEEEecCCCCcccc
Q 006513 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNS----RRGTVLFRVVSENGSQDRNDK 523 (642)
Q Consensus 448 li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~----~~g~i~i~~~~~~~~~~~~~~ 523 (642)
+++.+....+..+. +++.+.-+.++++|+ +.+|+.+|.|++.||+.||..+.. .+|.|+++.+..-.-
T Consensus 206 VLerV~~lv~~e~~-~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~------ 277 (363)
T COG3852 206 VLERVRALVEAEFA-DNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL------ 277 (363)
T ss_pred HHHHHHHHHhcccC-CceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE------
Confidence 99999887766554 568999999999995 999999999999999999999633 348888887432110
Q ss_pred ccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceE
Q 006513 524 KWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQS 603 (642)
Q Consensus 524 ~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~ 603 (642)
+-........+.++|.|||||+|++..+++|+||.+++ .+|+||||+++++++..|||.|+++|.| | .|+
T Consensus 278 -----~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r---~~GsGLGLala~~li~qH~G~Ie~~S~P-g-~T~ 347 (363)
T COG3852 278 -----TIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGR---EGGTGLGLALAQNLIDQHGGKIEFDSWP-G-RTV 347 (363)
T ss_pred -----EccCceeEeeeeeEEecCCCCCChHHhhhccccccccC---CCCccccHHHHHHHHHhcCCEEEEeccC-C-ceE
Confidence 00111223447789999999999999999999997654 4699999999999999999999999994 5 799
Q ss_pred EEEEEEeec
Q 006513 604 MGLVLRFQL 612 (642)
Q Consensus 604 f~i~LP~~~ 612 (642)
|++.+|...
T Consensus 348 FrvllP~~~ 356 (363)
T COG3852 348 FRVLLPIRK 356 (363)
T ss_pred EEEEeeccc
Confidence 999999976
No 21
>PRK10604 sensor protein RstB; Provisional
Probab=99.98 E-value=1.1e-30 Score=285.29 Aligned_cols=231 Identities=11% Similarity=0.101 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006513 351 EQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSP 430 (642)
Q Consensus 351 ~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr 430 (642)
+..+.+.+..++.++..+.+.+|.+.+|||+||||+.|.+.++++.+. +++.. +.+.+..+++..++++++.+++
T Consensus 193 ~L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~---~~i~~~~~~l~~li~~ll~~~r 267 (433)
T PRK10604 193 RLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAES---QALNRDIGQLEALIEELLTYAR 267 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445555556678899999999999999999999888632 22222 2377889999999999999999
Q ss_pred ccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEE
Q 006513 431 KDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFR 510 (642)
Q Consensus 431 ~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~ 510 (642)
++.+..++..+++++.+++++++..++.....+++.+.+ +.+ +..+.+|+..+.+++.||++||+||+ ++.|.|+
T Consensus 268 l~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~--~~~-~~~~~~d~~~l~~vl~NLl~NAik~~--~~~I~I~ 342 (433)
T PRK10604 268 LDRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDT--PHQ-GDYGALDMRLMERVLDNLLNNALRYA--HSRVRVS 342 (433)
T ss_pred ccCCCcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEe--cCC-CceEecCHHHHHHHHHHHHHHHHHhC--CCeEEEE
Confidence 999988888899999999999999888877777666554 333 22578899999999999999999975 4778888
Q ss_pred EEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC---CCCCCccchHHHHHHHHHHc
Q 006513 511 VVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKLVQLM 587 (642)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~iv~~~ 587 (642)
+...++. +.++|.|+|+|||++..+++|+||++... ++.+|+||||+|||++++.|
T Consensus 343 ~~~~~~~---------------------~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~ 401 (433)
T PRK10604 343 LLLDGNQ---------------------ACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAM 401 (433)
T ss_pred EEEECCE---------------------EEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHHC
Confidence 8776544 89999999999999999999999998543 23468999999999999999
Q ss_pred CCEEEEEecCCCCceEEEEEEEeecC
Q 006513 588 QGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 588 gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
||+|++++. +++|++|++.+|...+
T Consensus 402 gG~i~v~s~-~~~G~~f~i~lP~~~~ 426 (433)
T PRK10604 402 GGSVNCDES-ELGGARFSFSWPVWHN 426 (433)
T ss_pred CCEEEEEec-CCCeeEEEEEEeCCCC
Confidence 999999999 5889999999998753
No 22
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.98 E-value=1.8e-30 Score=286.48 Aligned_cols=234 Identities=11% Similarity=0.127 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006513 349 LEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMD 427 (642)
Q Consensus 349 l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~ 427 (642)
+.+..+.+.+..++.++..+...+|++.++|||||||++|.++++.+.+.. .+. .+....+.+..+++.++++++++
T Consensus 245 l~~L~~~ln~~l~~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~~--~~~~~~~~~~i~ri~~~i~~ll~ 322 (485)
T PRK10815 245 LTSLVRNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMSV--EQAEPIMLEQISRISQQIGYYLH 322 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444555678999999999999999999999987643 222 23345677888899999999999
Q ss_pred hccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEE
Q 006513 428 NSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTV 507 (642)
Q Consensus 428 ~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i 507 (642)
.++.+.+...+..+.+++.++++++++.+...+..+++.+.++++++. .+.+|+..+.+++.||++||+||++. .+
T Consensus 323 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~--~i 398 (485)
T PRK10815 323 RASMRSEHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE--FV 398 (485)
T ss_pred HHHhhcCCcccccceecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC--cE
Confidence 999988888888899999999999999999999999999999887654 47899999999999999999998765 35
Q ss_pred EEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHc
Q 006513 508 LFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLM 587 (642)
Q Consensus 508 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~ 587 (642)
.|++...++. +.|.|.|+|+|||++.++++|++|++..+ ..+|+||||+|||++++.|
T Consensus 399 ~I~~~~~~~~---------------------v~I~V~D~G~GI~~e~~~~iF~~f~~~~~-~~~G~GLGL~Ivk~iv~~~ 456 (485)
T PRK10815 399 EISARQTDEH---------------------LHIVVEDDGPGIPESKRELIFDRGQRADT-LRPGQGLGLSVAREITEQY 456 (485)
T ss_pred EEEEEEeCCE---------------------EEEEEEECCCCcCHHHHHHHhCCcccCCC-CCCCcchhHHHHHHHHHHc
Confidence 5665554333 88999999999999999999999997654 3459999999999999999
Q ss_pred CCEEEEEecCCCCceEEEEEEEee
Q 006513 588 QGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 588 gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
||+|+++|. +++||+|++.||.+
T Consensus 457 gG~i~v~s~-~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 457 EGKISAGDS-PLGGARMEVIFGRQ 479 (485)
T ss_pred CCEEEEEEC-CCCEEEEEEEEcCC
Confidence 999999999 58899999999976
No 23
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=6.3e-30 Score=272.24 Aligned_cols=212 Identities=11% Similarity=0.111 Sum_probs=178.6
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeH-HHHH
Q 006513 371 NAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRL-HAMI 449 (642)
Q Consensus 371 ~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L-~~li 449 (642)
..|.+.++||+||||++|.+.++++.+... + ..+.+.+..+++...+++++++++.+.........++++ ++++
T Consensus 138 ~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~~~i 212 (356)
T PRK10755 138 RLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLEDVI 212 (356)
T ss_pred HHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHHHHH
Confidence 458899999999999999999998764322 2 234455667889999999999999876655566678888 9999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCcccccccccc
Q 006513 450 KEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWR 529 (642)
Q Consensus 450 ~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~ 529 (642)
..+...++..+..+++.+.++.++. +..+.+|+..+.+++.||++||+||+++++.|.|++...++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~------------ 279 (356)
T PRK10755 213 LPSQDELSEMLEQRQQTLLLPESAA-DITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQEDGG------------ 279 (356)
T ss_pred HHHHHHHHHHHHHhCCeEEeccCCC-ceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCE------------
Confidence 9999889988888988887743333 336999999999999999999999998889999988765444
Q ss_pred ccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCC-CceEEEEEE
Q 006513 530 QSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHG-FAQSMGLVL 608 (642)
Q Consensus 530 ~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g-~Gt~f~i~L 608 (642)
+.++|.|+|+||+++..+++|++|++... ..+|+|+||++|+++++.|||+|+++|. ++ +||+|++.+
T Consensus 280 ---------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~g~GlGL~i~~~i~~~~gg~i~i~s~-~~~~Gt~~~i~~ 348 (356)
T PRK10755 280 ---------AVLAVEDEGPGIDESKCGELSKAFVRMDS-RYGGIGLGLSIVSRITQLHHGQFFLQNR-QERSGTRAWVWL 348 (356)
T ss_pred ---------EEEEEEECCCCCCHHHHHHhCCCeEeCCC-CCCCcCHHHHHHHHHHHHCCCEEEEEEC-CCCCeEEEEEEe
Confidence 89999999999999999999999997543 4569999999999999999999999999 46 899999999
Q ss_pred Eee
Q 006513 609 RFQ 611 (642)
Q Consensus 609 P~~ 611 (642)
|..
T Consensus 349 p~~ 351 (356)
T PRK10755 349 PKA 351 (356)
T ss_pred cCC
Confidence 964
No 24
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.97 E-value=6.3e-30 Score=282.17 Aligned_cols=243 Identities=18% Similarity=0.216 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 347 ~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
+++.+..+.+.+..+++++..+.+.+|.+.++||+||||+.+.+.++.+++... +...+.+..+...++++.++++++.
T Consensus 217 dE~~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~ 295 (466)
T PRK10549 217 DELGRLAQDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLH 295 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666667778899999999999999999999999876432 2234567888889999999999999
Q ss_pred hhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCE
Q 006513 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++.+.+...+..+++++.+++++++..++.....+++.+.++++++. .+.+|+..+.|++.||++||++|++++|.
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~ 373 (466)
T PRK10549 296 QLSLSDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGS 373 (466)
T ss_pred HHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999999999999999999999999999999999889999998887653 48899999999999999999999988999
Q ss_pred EEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCC---CCCCccchHHHHHHH
Q 006513 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN---EGIEDRMSFSVCKKL 583 (642)
Q Consensus 507 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~---~~~G~GLGL~i~k~i 583 (642)
|.|.+...++. +.|.|.|+|+|||++.++++|++|++.... ..+|+|+||++||++
T Consensus 374 I~i~~~~~~~~---------------------~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i 432 (466)
T PRK10549 374 LHISAEQRDKT---------------------LRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNI 432 (466)
T ss_pred EEEEEEEcCCE---------------------EEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHH
Confidence 99998776544 899999999999999999999999986542 345899999999999
Q ss_pred HHHcCCEEEEEecCCCCceEEEEEEEeecCC
Q 006513 584 VQLMQGNIWMVPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 584 v~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
++.|||+++++|. +++|++|+|.||+...+
T Consensus 433 ~~~~~G~l~~~s~-~~~G~~~~i~lP~~~~~ 462 (466)
T PRK10549 433 VEAHNGRIIAAHS-PFGGVSITVELPLERDL 462 (466)
T ss_pred HHHcCCEEEEEEC-CCCeEEEEEEccCCCCC
Confidence 9999999999999 58899999999987543
No 25
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=2.2e-29 Score=288.60 Aligned_cols=239 Identities=10% Similarity=0.126 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 347 ~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
+|+.+..+.+.+..+++++..+...++.+.++||+|||++.|.+.++.+.....+++..++++.+.+.++++..+++++.
T Consensus 462 DEIg~La~afn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~ 541 (703)
T TIGR03785 462 DEIGDLSRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMS 541 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666677777777888999999999999999999999988776777788899999999999999999999
Q ss_pred hhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCE
Q 006513 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++++.+....+.+++++.+++++++..++.....+++.+.++ .+.. .+.+|+..+.|++.||++||+||+++++.
T Consensus 542 ~~arle~~~~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~--~~~~-~i~~d~~~L~~il~NLI~NAik~s~~~~~ 618 (703)
T TIGR03785 542 EATRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIP--ETPL-VMRGSPELIAQMLDKLVDNAREFSPEDGL 618 (703)
T ss_pred HHHhhhcccccccceeecHHHHHHHHHHHHHHHhhcCCEEEEec--CCCe-EEEECHHHHHHHHHHHHHHHHHHCCCCCe
Confidence 99999887777788999999999999999988888776666553 3322 68999999999999999999999998999
Q ss_pred EEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC---CCCCCccchHHHHHHH
Q 006513 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKL 583 (642)
Q Consensus 507 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~i 583 (642)
|.|++...++. +.|+|+|+|+|||++..+++|++|++... ...+|+||||+|||++
T Consensus 619 I~I~~~~~~~~---------------------v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~I 677 (703)
T TIGR03785 619 IEVGLSQNKSH---------------------ALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRLI 677 (703)
T ss_pred EEEEEEEcCCE---------------------EEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHHH
Confidence 99988765443 88999999999999999999999997543 2234899999999999
Q ss_pred HHHcCCEEEEEecCCCCceEEEEEEE
Q 006513 584 VQLMQGNIWMVPSSHGFAQSMGLVLR 609 (642)
Q Consensus 584 v~~~gG~I~v~s~~~g~Gt~f~i~LP 609 (642)
++.|||+|++++.+.|+|++|+|+||
T Consensus 678 v~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 678 ADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred HHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 99999999999984348999999998
No 26
>PRK09835 sensor kinase CusS; Provisional
Probab=99.97 E-value=1.5e-26 Score=256.25 Aligned_cols=238 Identities=12% Similarity=0.147 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 348 KLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 348 ~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
++....+.+.+..+++++..+.+.+|.+.++||+|||++.+.+.++.+.+.. ...+..+.+..+.+...++..++++++
T Consensus 240 El~~l~~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll 319 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDML 319 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555666778999999999999999999988776543 234456777888888999999999999
Q ss_pred hhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCE
Q 006513 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++.+.+.......++++.++++++...++.....+++.+.++. + +..+.+|+..+.+++.|+++||+||+++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~ 396 (482)
T PRK09835 320 FLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVG--D-PCQVAGDPLMLRRAISNLLSNALRYTPAGEA 396 (482)
T ss_pred HHHHhcCCCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeC--C-CcEEEECHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 999998888888888999999999999999988888888777653 3 3369999999999999999999999888888
Q ss_pred EEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC---CCCCCccchHHHHHHH
Q 006513 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKL 583 (642)
Q Consensus 507 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~i 583 (642)
|.|++...++. +.++|.|+|+|||++..+++|++|++... +..+|+||||+|||++
T Consensus 397 I~i~~~~~~~~---------------------~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i 455 (482)
T PRK09835 397 ITVRCQEVDHQ---------------------VQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSI 455 (482)
T ss_pred EEEEEEEeCCE---------------------EEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHHH
Confidence 99988766543 88999999999999999999999998543 2346999999999999
Q ss_pred HHHcCCEEEEEecCCCCceEEEEEEEee
Q 006513 584 VQLMQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 584 v~~~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
++.|||+|+++|. ++|++|+|.||..
T Consensus 456 ~~~~~g~i~~~s~--~~g~~~~i~lP~~ 481 (482)
T PRK09835 456 VVAHKGTVAVTSD--ARGTRFVISLPRL 481 (482)
T ss_pred HHHCCCEEEEEEC--CCcEEEEEEeeCC
Confidence 9999999999997 3599999999953
No 27
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=1.2e-28 Score=270.73 Aligned_cols=234 Identities=11% Similarity=0.107 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 006513 348 KLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSD-QRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 348 ~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~-~~~~l~~i~~~~~~l~~li~~ll 426 (642)
++.+..+.+.+..++.++..+...+|.+.++||+|||++.+.+.++.+.....+++ ...+++.+...++++..++++++
T Consensus 215 Ei~~l~~~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll 294 (449)
T PRK10337 215 EVRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLL 294 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555679999999999999999999888765444443 45788999999999999999999
Q ss_pred hhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCE
Q 006513 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
.+++.+.+......+++++.+++++++..+...+..+++.+.++.++..+ .+.+|+..+.+++.|+++||+||+++++.
T Consensus 295 ~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~l~~vl~Nli~NA~k~~~~~~~ 373 (449)
T PRK10337 295 TLSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAHPV-IRTGQPLLLSLLVRNLLDNAIRYSPQGSV 373 (449)
T ss_pred HHHhcCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCc-eeecCHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 99999877666677899999999999999999999999999998875533 57999999999999999999999988888
Q ss_pred EEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHH
Q 006513 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQL 586 (642)
Q Consensus 507 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~ 586 (642)
|.+++.. ..++|.|+|+|||++..+++|++|++......+|+||||+||++++++
T Consensus 374 i~i~~~~-------------------------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~iv~~i~~~ 428 (449)
T PRK10337 374 VDVTLNA-------------------------RNFTVRDNGPGVTPEALARIGERFYRPPGQEATGSGLGLSIVRRIAKL 428 (449)
T ss_pred EEEEEEe-------------------------eEEEEEECCCCCCHHHHHHhcccccCCCCCCCCccchHHHHHHHHHHH
Confidence 8887643 248999999999999999999999986655567999999999999999
Q ss_pred cCCEEEEEecCCCCceEEEEEE
Q 006513 587 MQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 587 ~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
|||+|++++. +++|++|++.+
T Consensus 429 ~gg~l~~~s~-~~~G~~~~i~~ 449 (449)
T PRK10337 429 HGMNVSFGNA-PEGGFEAKVSW 449 (449)
T ss_pred cCCEEEEEec-CCCeEEEEEeC
Confidence 9999999999 58899998864
No 28
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=2.4e-28 Score=268.60 Aligned_cols=236 Identities=18% Similarity=0.230 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDV 425 (642)
Q Consensus 347 ~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l 425 (642)
+++.+..+.+....+++.+..+...++.+.++||+||||+++.+.++.+.... ..++..++++.+.+..+++..+++++
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 297 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDM 297 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666666778999999999999999999998876443 33445678889999999999999999
Q ss_pred HhhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCC
Q 006513 426 MDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG 505 (642)
Q Consensus 426 l~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g 505 (642)
+++++.+........+++++.++++++.+.+...+..+++.+.++. + ..+.+|+..+.+++.|+++||+||.+.++
T Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~ 373 (457)
T TIGR01386 298 LFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVEG--E--GLVRGDPQMFRRAISNLLSNALRHTPDGG 373 (457)
T ss_pred HHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEecC--C--ceEEECHHHHHHHHHHHHHHHHHcCCCCc
Confidence 9999999888888889999999999999999988888887766543 3 35899999999999999999999988889
Q ss_pred EEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC---CCCCCccchHHHHHH
Q 006513 506 TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKK 582 (642)
Q Consensus 506 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~ 582 (642)
.|.|++..+++. +.|+|.|+|+|||++...++|++||+... ...+|+||||+|||+
T Consensus 374 ~I~i~~~~~~~~---------------------~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~ 432 (457)
T TIGR01386 374 TITVRIERRSDE---------------------VRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRS 432 (457)
T ss_pred eEEEEEEecCCE---------------------EEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHH
Confidence 999998876544 89999999999999999999999998653 345699999999999
Q ss_pred HHHHcCCEEEEEecCCCCceEEEEEEE
Q 006513 583 LVQLMQGNIWMVPSSHGFAQSMGLVLR 609 (642)
Q Consensus 583 iv~~~gG~I~v~s~~~g~Gt~f~i~LP 609 (642)
+++.|||++++++ + ++|++|++.||
T Consensus 433 ~~~~~~G~~~~~~-~-~~G~~~~~~~P 457 (457)
T TIGR01386 433 IMEAHGGRASAES-P-DGKTRFILRFP 457 (457)
T ss_pred HHHHCCCEEEEEe-C-CCceEEEEecC
Confidence 9999999999999 4 78999999998
No 29
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=2.2e-28 Score=256.67 Aligned_cols=216 Identities=19% Similarity=0.294 Sum_probs=190.8
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHH
Q 006513 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDV--NLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLH 446 (642)
Q Consensus 369 ~~~~~l~~~sHelrtPL~~I~g~~~lL~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~ 446 (642)
.+.+|.+.++||+||||+.|.++++.+... ..+++.+++++.|.+.++++..++++++++++.+.+......+++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 345689999999999999999999988754 345566788999999999999999999999999887778888999999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccc
Q 006513 447 AMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWA 526 (642)
Q Consensus 447 ~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~ 526 (642)
++++.+...+......+++.+.++.++. + .+.+|+..+.+++.||+.||++|.+.++.|.|++...++.
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~~~-~-~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~--------- 261 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEIDGG-V-DVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGGG--------- 261 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCCCC-c-eEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcCCE---------
Confidence 9999999999999999999999887432 4 6999999999999999999999988889999988765443
Q ss_pred cccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC---CCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceE
Q 006513 527 TWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQS 603 (642)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~ 603 (642)
+.+.|.|+|+|||++..+++|++|++... ....|+|+||++|+.+++.|||+|++.|. +|+||+
T Consensus 262 ------------~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~-~~~Gt~ 328 (333)
T TIGR02966 262 ------------AEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESE-LGKGST 328 (333)
T ss_pred ------------EEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHHHHHHCCCEEEEEec-CCCCeE
Confidence 88999999999999999999999986432 33468999999999999999999999999 599999
Q ss_pred EEEEE
Q 006513 604 MGLVL 608 (642)
Q Consensus 604 f~i~L 608 (642)
|+++|
T Consensus 329 ~~i~l 333 (333)
T TIGR02966 329 FSFIF 333 (333)
T ss_pred EEEEC
Confidence 99975
No 30
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.96 E-value=5.2e-28 Score=256.58 Aligned_cols=219 Identities=14% Similarity=0.204 Sum_probs=179.2
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHH
Q 006513 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (642)
Q Consensus 369 ~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~l 448 (642)
...+|++.++||+||||++|.++++++.+...+++.+++++.+.+.++++.+++++++.+.+.. ...+.+++.+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~------~~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPG------THVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCC------CCccccHHHH
Confidence 4467999999999999999999999988765566778999999999999999999999876542 2357799999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhccc-CCCCEEEEEEEEecCCCCcccccccc
Q 006513 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCN-SRRGTVLFRVVSENGSQDRNDKKWAT 527 (642)
Q Consensus 449 i~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~-~~~g~i~i~~~~~~~~~~~~~~~~~~ 527 (642)
++.+...+.... .+++.+.++.+++.| .+.+|+.++.||+.||++||++|. ++++.|.|++........
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~-------- 272 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTL-------- 272 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEcccccccc--------
Confidence 999888776554 456888887777766 599999999999999999999987 778888887743311000
Q ss_pred ccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEE
Q 006513 528 WRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
........+.+.|.|+|+|||++..+++|++|++++ ..|+||||++||++++.|||+|+++|. +| |++|++.
T Consensus 273 ---~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~---~~g~GlGL~i~~~iv~~~gG~i~~~s~-~~-~~~f~i~ 344 (348)
T PRK11073 273 ---HGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGR---EGGTGLGLSIARNLIDQHSGKIEFTSW-PG-HTEFSVY 344 (348)
T ss_pred ---CCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCC---CCCccCCHHHHHHHHHHcCCeEEEEec-CC-ceEEEEE
Confidence 000112247899999999999999999999998654 459999999999999999999999998 46 5999999
Q ss_pred EEee
Q 006513 608 LRFQ 611 (642)
Q Consensus 608 LP~~ 611 (642)
||+.
T Consensus 345 lP~~ 348 (348)
T PRK11073 345 LPIR 348 (348)
T ss_pred EecC
Confidence 9963
No 31
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.96 E-value=2.3e-27 Score=259.51 Aligned_cols=228 Identities=14% Similarity=0.147 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 347 ~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
+|+.+..+.+.+..++.++.++.+..|++.+|||+||||+.|.+.++++.++ .....+.+.+..+++..++++++
T Consensus 206 ~Ei~~L~~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l 280 (435)
T PRK09467 206 SEVRSVTRAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFI 280 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666777788889999999999999999999888776432 23345678889999999999999
Q ss_pred hhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCE
Q 006513 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++.+.+.. ....++++.+++++++.... ..+..+.++++.+ +..+.+|+..+.+++.||++||+||. ++.
T Consensus 281 ~~~r~~~~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~--~~~ 350 (435)
T PRK09467 281 DYLRTGQE---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG--NGW 350 (435)
T ss_pred HHhcccCC---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC--CCe
Confidence 99987543 34568899999999877554 3455666666655 33699999999999999999999975 577
Q ss_pred EEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC-CCCCCccchHHHHHHHHH
Q 006513 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV-NEGIEDRMSFSVCKKLVQ 585 (642)
Q Consensus 507 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~-~~~~G~GLGL~i~k~iv~ 585 (642)
|.|++...++. +.|+|.|+|+||+++..+++|++|++... ++.+|+|+||+|||++++
T Consensus 351 i~i~~~~~~~~---------------------~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~~~~g~GlGL~iv~~i~~ 409 (435)
T PRK09467 351 IKVSSGTEGKR---------------------AWFQVEDDGPGIPPEQLKHLFQPFTRGDSARGSSGTGLGLAIVKRIVD 409 (435)
T ss_pred EEEEEEecCCE---------------------EEEEEEecCCCcCHHHHHHhcCCcccCCCCCCCCCeehhHHHHHHHHH
Confidence 88887665433 88999999999999999999999998543 335699999999999999
Q ss_pred HcCCEEEEEecCCCCceEEEEEEEee
Q 006513 586 LMQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 586 ~~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
.|||++.+.+. +++|++|++.+|+.
T Consensus 410 ~~~g~l~i~~~-~~~G~~~~i~lp~~ 434 (435)
T PRK09467 410 QHNGKVELGNS-EEGGLSARAWLPLT 434 (435)
T ss_pred HCCCEEEEEEC-CCCcEEEEEEEeCC
Confidence 99999999998 58899999999975
No 32
>PRK13557 histidine kinase; Provisional
Probab=99.96 E-value=2.3e-27 Score=266.35 Aligned_cols=256 Identities=13% Similarity=0.137 Sum_probs=194.9
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeee
Q 006513 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-----LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSF 443 (642)
Q Consensus 369 ~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~-----~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~ 443 (642)
....++..++||+||||+.|.++++++.+.. ..+...+.++.+.+.++++..++++++++++.. ......+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 3456889999999999999999999886421 234556789999999999999999999998743 3445678
Q ss_pred eHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCcccc
Q 006513 444 RLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDK 523 (642)
Q Consensus 444 ~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~ 523 (642)
++.++++.+...+... ..+++.+.+..+++++ .+.+|+.++.|++.||+.||+||.+.++.+.|+.........
T Consensus 238 ~l~~~i~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~---- 311 (540)
T PRK13557 238 NLNGLVSGMGELAERT-LGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDE---- 311 (540)
T ss_pred CHHHHHHHHHHHHHHh-cCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcc----
Confidence 9999999887766543 3466777777777766 589999999999999999999998889988887754321100
Q ss_pred ccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceE
Q 006513 524 KWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQS 603 (642)
Q Consensus 524 ~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~ 603 (642)
.+..+. ....+..+.|+|.|||+|||++..+++|++|+++.. ...|+||||++||++++.|||+|+++|. +|+|++
T Consensus 312 ~~~~~~--~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~-~~~g~GlGL~i~~~~v~~~gG~i~~~s~-~~~G~~ 387 (540)
T PRK13557 312 DLAMYH--GLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE-EGKGTGLGLSMVYGFAKQSGGAVRIYSE-VGEGTT 387 (540)
T ss_pred cccccc--CCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC-CCCCCCccHHHHHHHHHHCCCEEEEEec-CCCceE
Confidence 000000 011334588999999999999999999999997654 3459999999999999999999999999 599999
Q ss_pred EEEEEEeecCCCCCCCCCCCCCCCCCccCCCCCcccccC
Q 006513 604 MGLVLRFQLRPSXXXXXXXLLYPYLNLENLRSTHIPILS 642 (642)
Q Consensus 604 f~i~LP~~~~~~~~~~~~~~~~~~~~~~~l~~~~iliv~ 642 (642)
|+|+||....+..+.+ ..+........+++|||||
T Consensus 388 f~i~lP~~~~~~~~~~----~~~~~~~~~~~~~~iliv~ 422 (540)
T PRK13557 388 VRLYFPASDQAENPEQ----EPKARAIDRGGTETILIVD 422 (540)
T ss_pred EEEEeeCCCCccCCCC----CCCCcccccCCCceEEEEc
Confidence 9999998654432211 1112223345677899986
No 33
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=3.4e-27 Score=260.71 Aligned_cols=238 Identities=13% Similarity=0.171 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006513 348 KLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMD 427 (642)
Q Consensus 348 ~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 427 (642)
++.+..+.+++.++.+++ .+...++++.++||+|||++.+.+.++.+++...+++.+++++.+.+.++++..+++++++
T Consensus 235 Ei~~l~~~~~~m~~~l~~-~~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 313 (475)
T PRK11100 235 ELRELAQALESMRVKLEG-KAYVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLE 313 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433 2334568899999999999999999999887555666788999999999999999999999
Q ss_pred hccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEE
Q 006513 428 NSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTV 507 (642)
Q Consensus 428 ~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i 507 (642)
+++++.........++++.++++++...+...+..+++.+.++.+ +..+.+|...+.+++.|++.||+||..+++.|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i 390 (475)
T PRK11100 314 LARLEQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTI 390 (475)
T ss_pred HHhcccCCCCccceeccHHHHHHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 999988777777889999999999999999999999999888765 23689999999999999999999998888999
Q ss_pred EEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC--CCCCCccchHHHHHHHHH
Q 006513 508 LFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV--NEGIEDRMSFSVCKKLVQ 585 (642)
Q Consensus 508 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~--~~~~G~GLGL~i~k~iv~ 585 (642)
.|++...++. +.++|+|+|+|||++.++++|++|++... ....|+|+||++|+++++
T Consensus 391 ~i~~~~~~~~---------------------~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i~~~~~~ 449 (475)
T PRK11100 391 TLSAEVDGEQ---------------------VALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAFVREVAR 449 (475)
T ss_pred EEEEEEcCCE---------------------EEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHHHHHHHH
Confidence 9998866544 89999999999999999999999987532 334689999999999999
Q ss_pred HcCCEEEEEecCCCCceEEEEEEEee
Q 006513 586 LMQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 586 ~~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
.|||+++++|. +++||+|.+.+|..
T Consensus 450 ~~~G~i~i~s~-~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 450 LHGGEVTLRNR-PEGGVLATLTLPRH 474 (475)
T ss_pred HCCCEEEEEEc-CCCeEEEEEEeeCC
Confidence 99999999999 58899999999964
No 34
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.96 E-value=4.9e-27 Score=258.65 Aligned_cols=237 Identities=12% Similarity=0.121 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 347 EKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVM 426 (642)
Q Consensus 347 ~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 426 (642)
+++.+..+.+.+..+++++....+.+|.+.+|||+||||+.+.+..+++....... ..+..+.+..+++.+++++++
T Consensus 220 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~ 296 (461)
T PRK09470 220 QEFRQAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLL 296 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666777778999999999999999999988876543222 246678889999999999999
Q ss_pred hhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCE
Q 006513 427 DNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGT 506 (642)
Q Consensus 427 ~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~ 506 (642)
++++.+.. ..+..+.+++.++++++++.++.....+++.+.++..++ +..+.+|+..+.+++.||++||+||.+ +.
T Consensus 297 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~--~~ 372 (461)
T PRK09470 297 VLSRNQQK-NHLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH--TK 372 (461)
T ss_pred HHHHhhcc-cccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC--Cc
Confidence 99997654 356778999999999999988888888888888874444 336899999999999999999999864 45
Q ss_pred EEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccC---CCCCCccchHHHHHHH
Q 006513 507 VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIV---NEGIEDRMSFSVCKKL 583 (642)
Q Consensus 507 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~---~~~~G~GLGL~i~k~i 583 (642)
|.|++...++. +.++|.|+|+||+++.++++|++|++... +..+|+|+||+||+++
T Consensus 373 i~i~~~~~~~~---------------------~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~ 431 (461)
T PRK09470 373 IEVAFSVDKDG---------------------LTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENA 431 (461)
T ss_pred EEEEEEEECCE---------------------EEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHH
Confidence 77777665443 89999999999999999999999998543 2346899999999999
Q ss_pred HHHcCCEEEEEecCCCCceEEEEEEEeec
Q 006513 584 VQLMQGNIWMVPSSHGFAQSMGLVLRFQL 612 (642)
Q Consensus 584 v~~~gG~I~v~s~~~g~Gt~f~i~LP~~~ 612 (642)
++.|||+++++|. +++||+|++.+|+..
T Consensus 432 v~~~~G~l~~~s~-~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 432 IQQHRGWVKAEDS-PLGGLRLTIWLPLYK 459 (461)
T ss_pred HHHCCCEEEEEEC-CCCeEEEEEEeeCCC
Confidence 9999999999999 588999999999853
No 35
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.95 E-value=2.6e-26 Score=260.88 Aligned_cols=215 Identities=17% Similarity=0.290 Sum_probs=189.3
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHH
Q 006513 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (642)
Q Consensus 369 ~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~l 448 (642)
+..++++.++||+||||+.|.++++++.....+++..++++.|.+.++++..++++++++++.... ...++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 356789999999999999999999998766566777899999999999999999999999886543 3468999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccc
Q 006513 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATW 528 (642)
Q Consensus 449 i~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~ 528 (642)
++++...+......+++.+.++++++++ .+.+|+..+.+++.|++.||+||...+|.|.|++...++.
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~----------- 532 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSDG----------- 532 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCC-----------
Confidence 9999999888877888999998887776 5899999999999999999999888888999988655321
Q ss_pred cccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEE
Q 006513 529 RQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 529 ~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
.+.++|+|+|+|||++..+++|++|++.. ..|+|+||++||++++.|||+|+++|. +|+||+|+|+|
T Consensus 533 ---------~~~i~v~D~G~G~~~~~~~~~f~~~~~~~---~~g~glGL~~~~~~~~~~~G~i~~~s~-~~~Gt~~~i~l 599 (607)
T PRK11360 533 ---------QVAVSIEDNGCGIDPELLKKIFDPFFTTK---AKGTGLGLALSQRIINAHGGDIEVESE-PGVGTTFTLYL 599 (607)
T ss_pred ---------EEEEEEEeCCCCCCHHHHhhhcCCceeCC---CCCCchhHHHHHHHHHHcCCEEEEEEc-CCCceEEEEEe
Confidence 18899999999999999999999998643 458999999999999999999999999 59999999999
Q ss_pred Eeec
Q 006513 609 RFQL 612 (642)
Q Consensus 609 P~~~ 612 (642)
|+..
T Consensus 600 p~~~ 603 (607)
T PRK11360 600 PINP 603 (607)
T ss_pred cCCC
Confidence 9853
No 36
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.95 E-value=5.1e-25 Score=231.32 Aligned_cols=210 Identities=12% Similarity=0.150 Sum_probs=170.9
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHhc---cCCCHH---HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeee
Q 006513 370 RNAFQKVMSNGMRRPMHSILGLLSIMQD---VNLNSD---QRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSF 443 (642)
Q Consensus 370 ~~~~l~~~sHelrtPL~~I~g~~~lL~~---~~~~~~---~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~ 443 (642)
=++-.+.++||+||||+-|...++-|+. ...+++ -.+..++|.+....+.+++++...|+|+- ++++++.
T Consensus 486 W~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP----~p~~e~~ 561 (712)
T COG5000 486 WGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP----APKLEKS 561 (712)
T ss_pred HHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCcc
Confidence 3455667999999999999999998864 223332 36789999999999999999999999964 3556789
Q ss_pred eHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccC-------CCCEEEEEEEEecC
Q 006513 444 RLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNS-------RRGTVLFRVVSENG 516 (642)
Q Consensus 444 ~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~-------~~g~i~i~~~~~~~ 516 (642)
||+++++++....+. ....+.+..+...+ |.....|+..+.|++.|++.||.++-. +.+.|+++....++
T Consensus 562 dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g 638 (712)
T COG5000 562 DLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADG 638 (712)
T ss_pred hHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCC
Confidence 999999999877653 33567888888877 767888999999999999999988521 22334444433333
Q ss_pred CCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEec
Q 006513 517 SQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPS 596 (642)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~ 596 (642)
.+++.|.|||.|+|.+...++|+|+.++. ..||||||+|+|+|+|.|||++...+.
T Consensus 639 ---------------------~i~v~V~DNGkG~p~e~r~r~~EPYvTtr---~KGTGLGLAiVKkIvEeHGG~leL~da 694 (712)
T COG5000 639 ---------------------RIVVDVIDNGKGFPRENRHRALEPYVTTR---EKGTGLGLAIVKKIVEEHGGRLELHNA 694 (712)
T ss_pred ---------------------eEEEEEecCCCCCChHHhhhhccCceecc---cccccccHHHHHHHHHhcCCeEEecCC
Confidence 29999999999999999999999997643 459999999999999999999999998
Q ss_pred CCCCceEEEEEEEe
Q 006513 597 SHGFAQSMGLVLRF 610 (642)
Q Consensus 597 ~~g~Gt~f~i~LP~ 610 (642)
|+-.|+.+++.||.
T Consensus 695 ~d~~GA~i~i~fp~ 708 (712)
T COG5000 695 PDFDGAMIRIKFPL 708 (712)
T ss_pred CCCCCcEEEEEccc
Confidence 65569999999997
No 37
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.95 E-value=3.2e-25 Score=231.11 Aligned_cols=219 Identities=20% Similarity=0.337 Sum_probs=186.4
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC-ccceeeeeeHHH
Q 006513 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGR-FPLEIRSFRLHA 447 (642)
Q Consensus 369 ~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~-~~l~~~~~~L~~ 447 (642)
.+..|++.++||+|||++.+.+..+.+... ....+++.++.+....+++..++++++++++.+.+. ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 467899999999999999999988855543 222267888888899999999999999999987763 334467788999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCcccccccc
Q 006513 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWAT 527 (642)
Q Consensus 448 li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~ 527 (642)
+++++...+......+++.+....+ . +..+.+|+.++.|++.||++||+||.+ ++.|.|.+...++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~~~----------- 258 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP-E-LPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQDDE----------- 258 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC-C-CceEeeCHHHHHHHHHHHHHHHhccCC-CCeEEEEEEecCC-----------
Confidence 9999999999888888888886554 2 236899999999999999999999988 8999999987643
Q ss_pred ccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEE
Q 006513 528 WRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
++.++|.|+|+||+++..+++|++|+++..... |+|+||++||++++.|||++++++. +|.||+|+++
T Consensus 259 ----------~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~-g~GlGL~i~~~~~~~~~g~i~~~~~-~~~Gt~~~i~ 326 (336)
T COG0642 259 ----------QVTISVEDTGPGIPEEELERIFEPFFRTDKSRS-GTGLGLAIVKRIVELHGGTISVESE-PGKGTTFTIR 326 (336)
T ss_pred ----------eEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC-CCCccHHHHHHHHHHcCCEEEEEec-CCCceEEEEE
Confidence 399999999999999999999999998765333 9999999999999999999999999 5889999999
Q ss_pred EEeecCC
Q 006513 608 LRFQLRP 614 (642)
Q Consensus 608 LP~~~~~ 614 (642)
+|.....
T Consensus 327 lP~~~~~ 333 (336)
T COG0642 327 LPLAPAA 333 (336)
T ss_pred Eeccccc
Confidence 9987543
No 38
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.94 E-value=3.7e-28 Score=278.62 Aligned_cols=576 Identities=39% Similarity=0.489 Sum_probs=467.1
Q ss_pred cCCCCCCCCcccCCCCC-CCChhhhHHHHHhhhHHHHHHHhhHhHHHHHHHhcCCC--CchHHHHHHHHHHHHHhhHHHH
Q 006513 21 VDGDNNFPRCNCDDDAS-SWSIESILETQKVSDFLIAVAYFSIPVELLYFISCSNV--PFKWVLIQFIAFIVLCGLTHLL 97 (642)
Q Consensus 21 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sd~~ia~a~~~i~~~l~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 97 (642)
...+..+.+|||+|..+ .+.....+..++.+|++++.|||++|.+++||...... .+.|....+++|+..|+.+|..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 102 (786)
T KOG0519|consen 23 DNDDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEAGVLSEFIAFDNLCGATHLL 102 (786)
T ss_pred ecCCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhcccccccccccceeccccchhhhhhhhhhcccc
Confidence 33446799999987643 44455677899999999999999999999999987754 3899999999999999999999
Q ss_pred HHHH-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH---HHHhhHHHHHHHHHHHhhhHHH
Q 006513 98 NGWT-YGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKK---AWDLGREVGIIMKQKEAGVHVR 173 (642)
Q Consensus 98 ~~~~-~~~~~~~~~~~~~~~~~~t~~v~~~~ai~l~~l~~~~l~~~~~e~~l~~~---~~~L~~e~~~~~~~~~~~~~l~ 173 (642)
+.|+ +.++...+..+.+..+.+++.+++.++...+.++|..+..+.++.+++.+ +.++.++........+...+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~s~~~~~~~~ 182 (786)
T KOG0519|consen 103 NGWTSYTSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAELDYEVGLINTSLETLSIVR 182 (786)
T ss_pred hhhhcCCccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchhhhhhhhhhhhhhheeeeee
Confidence 9999 68888888888899999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCC--CCCCCccccCChhHHHHHhcCCe
Q 006513 174 MLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNY--SDMCSSIPITDQDVVRIKGSDGV 251 (642)
Q Consensus 174 ~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~ 251 (642)
++++.+..+.+++.+++.+.....+.+..+.++.|.+.+..-.....|++..... .......+..+++...++.+.+.
T Consensus 183 ~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~~~~~~~~~t~~~~~~~~~~~~~~~ 262 (786)
T KOG0519|consen 183 MLTHEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNGGMLGGLSDTDLDSDQRLILNTDRV 262 (786)
T ss_pred eeeeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeecccccCcceEEeccccchHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987655666677664411 00122334456666666666554
Q ss_pred eEeCCCcchhhccCCCc--ccCCceeEEEecceeccccCCC-cchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHH
Q 006513 252 NILGPDSELAAASSGES--VESGPVAAIRMPMLRVSNFKGG-TPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQ 328 (642)
Q Consensus 252 ~~l~~~~~~~~~~~~~~--~~~~~~~~l~~Pl~~~~~~~g~-~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~q 328 (642)
-.....+.......... ...+.....++|+.+..++.+. ++......+++.++.+....++.|..++.++-+.++++
T Consensus 263 ~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~ 342 (786)
T KOG0519|consen 263 SAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANL 342 (786)
T ss_pred hccccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhh
Confidence 44443333332222111 2344667888888888777655 77788889999999999988999999999999999999
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH-HhccCCCHHHH
Q 006513 329 VLVALS--HAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSI-MQDVNLNSDQR 405 (642)
Q Consensus 329 va~al~--~a~l~~e~~~~~~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~l-L~~~~~~~~~~ 405 (642)
++.++. ++.-.++...+++++.+++..++.++++..++..++..++..+.|.+|+|.+.+.+.... +++..+.+++.
T Consensus 343 v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~ 422 (786)
T KOG0519|consen 343 VSNAIKFTHAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSG 422 (786)
T ss_pred ccceecccccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCc
Confidence 999998 777777888888899999999999999999999999999999999999999999999884 45555677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHH
Q 006513 406 MIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERR 485 (642)
Q Consensus 406 ~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~ 485 (642)
-.++...+....+..+++.-.+.++...|........+.+..+++...+...+....+...+.+.+..+.|..+..|+.+
T Consensus 423 ~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 502 (786)
T KOG0519|consen 423 LEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKR 502 (786)
T ss_pred eeEehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhh
Confidence 78888899999999999999999998777777778899999999999999999998888999998888888889999999
Q ss_pred HHHHHHHHHHHhhc--ccCCCCEEEEEEEEe--cCCCCcc-ccccccccccCCCCceEEEEEEEECCCCCCcchhhhhcc
Q 006513 486 VFQVILHMVGSLLN--CNSRRGTVLFRVVSE--NGSQDRN-DKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQ 560 (642)
Q Consensus 486 l~qvl~NLl~NAik--~~~~~g~i~i~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~ 560 (642)
..|++.+..+++.+ ++..+.+..+.+..+ +..-+.. ...+..|....+...-.+.+.++++..+....+....+.
T Consensus 503 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 582 (786)
T KOG0519|consen 503 LFQIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNP 582 (786)
T ss_pred hhhhhhhhcchhhhhhccccCcceeEEEEecccCccccccccchhhhhhcccccccchheEEeeeccccccCCCcchhhh
Confidence 99999999999988 666676545555444 2221111 222333444444444568889999999988888777766
Q ss_pred ccccccC---CCCCCccchHHHHHHHHHHcCCEEEEEec
Q 006513 561 LGIRRIV---NEGIEDRMSFSVCKKLVQLMQGNIWMVPS 596 (642)
Q Consensus 561 ~f~~~~~---~~~~G~GLGL~i~k~iv~~~gG~I~v~s~ 596 (642)
.+.+... ....+.+++++.|++..+.++|.+++...
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (786)
T KOG0519|consen 583 LHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPS 621 (786)
T ss_pred hhhccccchhhcccccccccccchhhHHhhhcccccccc
Confidence 6654333 11356889999999999999999999854
No 39
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.94 E-value=3.5e-22 Score=225.83 Aligned_cols=345 Identities=10% Similarity=0.094 Sum_probs=227.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCe-e-EEEEEecCCCCCCCCCcccc
Q 006513 160 GIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTE-M-NLTHQLNGRNYSDMCSSIPI 237 (642)
Q Consensus 160 ~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~-l-~~~~~~~~~~~~~~~~~i~~ 237 (642)
..+.++.+.+..||..++.+..+.+..+.++.++.++.+.++++.+.+-+.+.+... . .+.+. + ....
T Consensus 210 ~~l~~~~~~l~~ly~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~--------~~~~ 279 (569)
T PRK10600 210 AGLEQKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYETDDEENHQEFTCQ--S--------DMTC 279 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhcCCCceEEEEeccccccceeeccCC--C--------ccCc
Confidence 345666666778999999999999999999999999999999998888665433221 1 11110 0 0000
Q ss_pred CChhHHHHHhcCCeeEeCCCcchhhccCCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchh
Q 006513 238 TDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQ 317 (642)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~ 317 (642)
.+..+..+. .. . ........++.+|+...... +|++.......+.++++
T Consensus 280 ~~~~~~~~~--------~~-------~---~~~~~~~~~~~~~l~~~~~~-------------~G~~~~~~~~~~~l~~~ 328 (569)
T PRK10600 280 DDKGCQLCP--------RG-------V---LPVGDRGTTLKWRLSDKHGQ-------------YGILLATLPQGRHLSHD 328 (569)
T ss_pred ccccccccc--------cc-------C---CCcCCCCceEEEEeecCCcc-------------eEEEEEEcCCCCCCCHH
Confidence 000000000 00 0 00011234678888766555 45666655556789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q 006513 318 ELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQD 397 (642)
Q Consensus 318 e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~ 397 (642)
+.++++.++.+++.+++..+..++ .+++... +.+..+...+-|.+..+|+.+...++.++.
T Consensus 329 ~~~ll~~l~~~l~~~l~~~~~~~~-----------~~~~~~~--------~er~~iarelhd~i~~~L~~l~~~~~~l~~ 389 (569)
T PRK10600 329 QQQLVDTLVEQLTATLALERQQER-----------QQQLIVM--------EERATIARELHDSIAQSLSCMKMQVSCLQM 389 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH--------HHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 999999999999988755432211 0111110 111112222223333445555555554442
Q ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCC
Q 006513 398 --VNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSL 475 (642)
Q Consensus 398 --~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~l 475 (642)
...+++.++.++.|.+..+++...+++++...+. ...+.++.+.+++++..+.... ++.+.++.+.+.
T Consensus 390 ~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~~~~~~l~~~l~~~~~~~~~~~---~~~i~~~~~~~~ 459 (569)
T PRK10600 390 QGDALPESSRELLSQIRNELNASWRQLRELLTTFRL-------QLTEPGLRPALEASCEEFSARF---GFPVKLDYQLPP 459 (569)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------CcccCCHHHHHHHHHHHHHHHh---CCeEEEEecCCc
Confidence 3345677889999999999999999999987664 2346788899998888776544 344554443221
Q ss_pred CCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchh
Q 006513 476 PDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (642)
Q Consensus 476 p~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (642)
+.....++..+.|++.|+++||+||++ .+.|.|++...++. +.++|.|+|+|||++.
T Consensus 460 ~~~~~~~~~~l~~il~ell~NA~kha~-a~~i~V~~~~~~~~---------------------~~l~V~D~G~Gi~~~~- 516 (569)
T PRK10600 460 RLVPSHQAIHLLQIAREALSNALKHAQ-ASEVVVTVAQNQNQ---------------------VKLSVQDNGCGVPENA- 516 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEEEEcCCE---------------------EEEEEEECCCCCCccc-
Confidence 111223445699999999999999764 57788888655433 8999999999998763
Q ss_pred hhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEeec
Q 006513 556 TSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQL 612 (642)
Q Consensus 556 ~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~ 612 (642)
..+.|+||+|||++++.|||+|++++. +|+||+|+++||...
T Consensus 517 --------------~~~~glGL~i~~~~~~~lgG~l~i~s~-~~~Gt~v~i~lp~~~ 558 (569)
T PRK10600 517 --------------ERSNHYGLIIMRDRAQSLRGDCRVRRR-ESGGTEVVVTFIPEK 558 (569)
T ss_pred --------------cCCCCccHHHHHHHHHHcCCEEEEEEC-CCCCEEEEEEEecCC
Confidence 127899999999999999999999999 588999999999853
No 40
>PRK13560 hypothetical protein; Provisional
Probab=99.93 E-value=6.1e-25 Score=258.80 Aligned_cols=210 Identities=8% Similarity=0.095 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCc
Q 006513 357 QQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRF 436 (642)
Q Consensus 357 ~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~ 436 (642)
++++++++++.+.++.|++.||||+||||++|.|+++++.+...+++.+.++..+......+....+.+...
T Consensus 592 K~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 663 (807)
T PRK13560 592 KHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS-------- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 344455556677789999999999999999999999998776666777777777666666666665555432
Q ss_pred cceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCC---CEEEEEEEE
Q 006513 437 PLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR---GTVLFRVVS 513 (642)
Q Consensus 437 ~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~---g~i~i~~~~ 513 (642)
....++++.++++++...+......+...+.+.++.+.+.....+...+.||+.||++||+||+.++ |.|.|++..
T Consensus 664 -~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~ 742 (807)
T PRK13560 664 -EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIRE 742 (807)
T ss_pred -ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEE
Confidence 2345789999999999988887776666666666554343344556678899999999999987443 677777765
Q ss_pred ecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEE
Q 006513 514 ENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWM 593 (642)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v 593 (642)
.+ +.++.|+|+|||+|||++.. ...|+||||+|||+||+.|||+|++
T Consensus 743 ~~--------------------~~~v~i~V~D~G~GI~~~~~-------------~~~~~gLGLai~~~iv~~~gG~I~v 789 (807)
T PRK13560 743 QG--------------------DGMVNLCVADDGIGLPAGFD-------------FRAAETLGLQLVCALVKQLDGEIAL 789 (807)
T ss_pred cC--------------------CCEEEEEEEeCCCcCCcccc-------------ccccCCccHHHHHHHHHHcCCEEEE
Confidence 42 22499999999999998731 1237789999999999999999999
Q ss_pred EecCCCCceEEEEEEEee
Q 006513 594 VPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 594 ~s~~~g~Gt~f~i~LP~~ 611 (642)
+|. +||+|+|+||+.
T Consensus 790 ~S~---~Gt~F~i~lP~~ 804 (807)
T PRK13560 790 DSR---GGARFNIRFPMS 804 (807)
T ss_pred EcC---CceEEEEEecCC
Confidence 985 599999999974
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.92 E-value=4.2e-23 Score=227.95 Aligned_cols=249 Identities=10% Similarity=0.145 Sum_probs=176.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 006513 313 TWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDA-LMASQARNAFQKVMSNGMRRPMHSILGL 391 (642)
Q Consensus 313 ~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~a~~~~-~~a~~~~~~~l~~~sHelrtPL~~I~g~ 391 (642)
.|..+..+++..++.++...+--....++.++.+++++++.++.++..++. +..++.+.++.+.+.||+++||++|.+.
T Consensus 244 ~~~~~~~~l~~~l~~~~l~gi~lg~~i~r~r~l~~~L~~~l~~~~~l~~~L~~~~e~~r~~ia~elhdeI~~pLtaI~~~ 323 (495)
T PRK11644 244 TWHDHPVDLLLSLLAQSLTGLLLGAGIQRQRELNQSLQKELARNRHLAERLLETEESVRRDVARELHDEIGQTITAIRTQ 323 (495)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 344445566666666655444333333333333444443322222222222 2234567788999999999999999999
Q ss_pred HHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEE
Q 006513 392 LSIMQDVNL-NSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIE 470 (642)
Q Consensus 392 ~~lL~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~ 470 (642)
++++++... +++.++..+.|.+.+.++.+.++++++..+. ...+++++.+.++++++.+.... +++.++++
T Consensus 324 a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L~~~l~~l~~~l~~~~--~~~~v~l~ 395 (495)
T PRK11644 324 AGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTLEQAIRSLMREMELED--RGIVSHLD 395 (495)
T ss_pred HHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCHHHHHHHHHHHHHHhh--cCceEEEE
Confidence 998876433 3445678889999999999999999876552 23457899999999988776544 44455554
Q ss_pred eCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCC
Q 006513 471 VDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGS 550 (642)
Q Consensus 471 ~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi 550 (642)
.+.+.+.....|+..+.|++.|+++||+||.+ .++|.|++..+++. +.++|+|||+||
T Consensus 396 ~~~~~~~l~~~~~~~L~ril~nlL~NAiKha~-~~~I~I~l~~~~~~---------------------i~l~V~DnG~Gi 453 (495)
T PRK11644 396 WRIDESALSETQRVTLFRVCQEGLNNIVKHAD-ASAVTLQGWQQDER---------------------LMLVIEDDGSGL 453 (495)
T ss_pred ecCCcccCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEEEEEcCCE---------------------EEEEEEECCCCC
Confidence 43222224667788899999999999999754 56888888765443 899999999999
Q ss_pred CcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEe
Q 006513 551 QPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRF 610 (642)
Q Consensus 551 ~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~ 610 (642)
|+++ .|.|+||++||++++.|||+|+++| ++||+|++++|.
T Consensus 454 ~~~~----------------~~~GLGL~ivr~iv~~~GG~i~v~S---~~Gt~f~I~LP~ 494 (495)
T PRK11644 454 PPGS----------------GQQGFGLRGMRERVTALGGTLTISC---THGTRLSVSLPQ 494 (495)
T ss_pred CcCC----------------CCCCCcHHHHHHHHHHcCCEEEEEc---CCCEEEEEEEeC
Confidence 8752 2689999999999999999999998 469999999995
No 42
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-22 Score=204.96 Aligned_cols=212 Identities=13% Similarity=0.187 Sum_probs=175.0
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHH
Q 006513 371 NAFQKVMSNGMRRPMHSILGLLSIMQ---DVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHA 447 (642)
Q Consensus 371 ~~~l~~~sHelrtPL~~I~g~~~lL~---~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~ 447 (642)
++-+.+++||++.||+++..|+=... ++..++....+++.|..-.+|+..+|+.+..|+|..+++-++ .|+++++
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHH
Confidence 45577899999999999998875443 344556668999999999999999999999999987776554 4999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCC-CEEEEEEEEecCCCCccccccc
Q 006513 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR-GTVLFRVVSENGSQDRNDKKWA 526 (642)
Q Consensus 448 li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~-g~i~i~~~~~~~~~~~~~~~~~ 526 (642)
+++.+...+....+.+.+.+.. |.+.| +|+||+..++||+.|++-||+++.... .-|.+.+....
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li~--ptD~~-~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~----------- 595 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLIN--PTDDL-MVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTE----------- 595 (673)
T ss_pred HHHHHHHHHHhhhhhccccccC--Ccccc-eecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecCc-----------
Confidence 9999999999988888776664 44556 899999999999999999999965443 34444443321
Q ss_pred cccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEE
Q 006513 527 TWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGL 606 (642)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i 606 (642)
....++.|.|||+|-|-+..+++|.||.++ +.-|.|+||+||..+++.|.|++.+.|+ ..+|+.+.+
T Consensus 596 ---------~e~l~i~i~DnGqGwp~~l~dkLl~PFtts---K~vgLGlGLSIsqSlmeqmqG~l~lASt-Lt~nA~ViL 662 (673)
T COG4192 596 ---------QEMLRIAIIDNGQGWPHELVDKLLTPFTTS---KEVGLGLGLSISQSLMEQMQGRLALAST-LTKNAMVIL 662 (673)
T ss_pred ---------ccceEEEEecCCCCCchhHHHHhcCCcccc---cccccccchhHHHHHHHHhcCcchHhhh-cccCcEEEE
Confidence 223899999999999999999999999654 4459999999999999999999999999 788998877
Q ss_pred EEEee
Q 006513 607 VLRFQ 611 (642)
Q Consensus 607 ~LP~~ 611 (642)
.+...
T Consensus 663 ~f~v~ 667 (673)
T COG4192 663 EFQVD 667 (673)
T ss_pred EEeec
Confidence 76654
No 43
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.91 E-value=3.4e-23 Score=232.87 Aligned_cols=195 Identities=15% Similarity=0.197 Sum_probs=138.5
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHH
Q 006513 372 AFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKE 451 (642)
Q Consensus 372 ~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~ 451 (642)
++++.++||+||||++|.|++++... ++..+++..+ +.+....++++++..+ .+ ++..
T Consensus 341 ~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~~-----~~~~ 398 (542)
T PRK11086 341 DALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKT---ANNYQEEIGSLLGKIK----------SP-----VIAG 398 (542)
T ss_pred HHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHH---HHHHHHHHHHHHHhcc----------CH-----HHHH
Confidence 45667899999999999999886432 2223333222 2222222333332211 01 1222
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCCeE-EecHHHHHHHHHHHHHHhhccc--CCCCEEEEEEEEecCCCCccccccccc
Q 006513 452 AACLARCLSIYRGFGFSIEVDRSLPDHV-MGDERRVFQVILHMVGSLLNCN--SRRGTVLFRVVSENGSQDRNDKKWATW 528 (642)
Q Consensus 452 ~~~~~~~~~~~~~i~~~~~~~~~lp~~v-~~D~~~l~qvl~NLl~NAik~~--~~~g~i~i~~~~~~~~~~~~~~~~~~~ 528 (642)
.+......+..+++.+.++.++.+|... ..+...+.||+.||++||+||. ++++.|.+++...++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~----------- 467 (542)
T PRK11086 399 FLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRNGW----------- 467 (542)
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCE-----------
Confidence 2222334566788888887766655311 2234579999999999999985 3467788887765433
Q ss_pred cccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEE
Q 006513 529 RQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 529 ~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
+.+.|+|+|+|||++..+++|++|++++ ..|+|+||++||++++.|||+|+++|. +|+|++|+|+|
T Consensus 468 ----------~~i~V~D~G~gi~~~~~~~iF~~~~~~~---~~g~GlGL~iv~~iv~~~~G~i~v~s~-~~~G~~f~i~l 533 (542)
T PRK11086 468 ----------LHCEVSDDGPGIAPDEIDAIFDKGYSTK---GSNRGVGLYLVKQSVENLGGSIAVESE-PGVGTQFFVQI 533 (542)
T ss_pred ----------EEEEEEECCCCCCHHHHHHHHhCCCccC---CCCCcCcHHHHHHHHHHcCCEEEEEeC-CCCcEEEEEEE
Confidence 8899999999999999999999998643 459999999999999999999999999 69999999999
Q ss_pred EeecC
Q 006513 609 RFQLR 613 (642)
Q Consensus 609 P~~~~ 613 (642)
|....
T Consensus 534 P~~~~ 538 (542)
T PRK11086 534 PWDGE 538 (542)
T ss_pred eCCCC
Confidence 98643
No 44
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.91 E-value=1.1e-22 Score=229.11 Aligned_cols=193 Identities=12% Similarity=0.117 Sum_probs=147.5
Q ss_pred HHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHHHH
Q 006513 374 QKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAA 453 (642)
Q Consensus 374 l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~~~ 453 (642)
+..++||++|||++|.|+.++- +..+..+.+.+.++.+..+++.+...... ..+.....
T Consensus 342 l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~~--------------~~~~~~l~ 400 (545)
T PRK15053 342 LRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFAD--------------RQVAGLLF 400 (545)
T ss_pred HHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhccc--------------HHHHHHHH
Confidence 4568999999999999987642 22356777888888888888877664321 11111111
Q ss_pred HHHHHHHhhcCCeEEEEeCCC---CCCeEEecHHHHHHHHHHHHHHhhccc---CC-CCEEEEEEEEecCCCCccccccc
Q 006513 454 CLARCLSIYRGFGFSIEVDRS---LPDHVMGDERRVFQVILHMVGSLLNCN---SR-RGTVLFRVVSENGSQDRNDKKWA 526 (642)
Q Consensus 454 ~~~~~~~~~~~i~~~~~~~~~---lp~~v~~D~~~l~qvl~NLl~NAik~~---~~-~g~i~i~~~~~~~~~~~~~~~~~ 526 (642)
.....+.++++.+.+..+.+ +| ...|+..+.|++.||++||+||. ++ ++.|.|++...++.
T Consensus 401 -~~~~~~~~~~i~~~~~~~~~~~~l~--~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~--------- 468 (545)
T PRK15053 401 -GKVQRARELGLKMVIVPGSQLSQLP--PGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDD--------- 468 (545)
T ss_pred -HHHHHHHHhCCceEEcCCCcccccc--ccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCE---------
Confidence 12334566777777654433 33 46799999999999999999983 33 36777777654333
Q ss_pred cccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEE
Q 006513 527 TWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGL 606 (642)
Q Consensus 527 ~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i 606 (642)
+.++|+|+|+|||++..+++|++||+++....+|+|+||+|||++++.|||+|+++|. +|.||+|++
T Consensus 469 ------------~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~~~g~GlGL~ivk~iv~~~~G~i~v~s~-~~~Gt~f~i 535 (545)
T PRK15053 469 ------------VVIEVADQGCGVPESLRDKIFEQGVSTRADEPGEHGIGLYLIASYVTRCGGVITLEDN-DPCGTLFSI 535 (545)
T ss_pred ------------EEEEEEeCCCCcCHHHHHHHhCCCCCCCCCCCCCceeCHHHHHHHHHHcCCEEEEEEC-CCCeEEEEE
Confidence 8899999999999999999999999876655568999999999999999999999999 699999999
Q ss_pred EEEeec
Q 006513 607 VLRFQL 612 (642)
Q Consensus 607 ~LP~~~ 612 (642)
.||...
T Consensus 536 ~lP~~~ 541 (545)
T PRK15053 536 FIPKVK 541 (545)
T ss_pred EECCCC
Confidence 999753
No 45
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.91 E-value=2.1e-20 Score=196.75 Aligned_cols=196 Identities=14% Similarity=0.188 Sum_probs=150.6
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHH
Q 006513 372 AFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKE 451 (642)
Q Consensus 372 ~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~ 451 (642)
+-++..+||..|-|++|.|++++= +..+..+.|.+.++.-.+.++.+..--+ +..+..
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~-------~yd~a~~~I~~~~~~qq~~~~~l~~~i~---------------~~~lAg 392 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLG-------EYDDALDYIQQESEEQQELIDSLSEKIK---------------DPVLAG 392 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHhhhhhhHHHHHHhcc---------------cHHHHH
Confidence 457788999999999999998762 2333445555555555555555543211 233444
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCCe-EEecHHHHHHHHHHHHHHhhcccC---CCCEEEEEEEEecCCCCcccccccc
Q 006513 452 AACLARCLSIYRGFGFSIEVDRSLPDH-VMGDERRVFQVILHMVGSLLNCNS---RRGTVLFRVVSENGSQDRNDKKWAT 527 (642)
Q Consensus 452 ~~~~~~~~~~~~~i~~~~~~~~~lp~~-v~~D~~~l~qvl~NLl~NAik~~~---~~g~i~i~~~~~~~~~~~~~~~~~~ 527 (642)
.+---...+++.|+.+.++....+|.. -..+...+--++.||++||+++.. +++.|.+.+..+++.
T Consensus 393 ~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~---------- 462 (537)
T COG3290 393 FLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDE---------- 462 (537)
T ss_pred HHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCE----------
Confidence 443444567888999998877666531 456788899999999999999755 557788888766554
Q ss_pred ccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEE
Q 006513 528 WRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
+.++|+|+||||||+..+++|++.+++++ ..+.|.||++||+.|+.+||.|+++|+ .+.||+|++.
T Consensus 463 -----------lvieV~D~G~GI~~~~~~~iFe~G~Stk~--~~~rGiGL~Lvkq~V~~~~G~I~~~s~-~~~Gt~F~i~ 528 (537)
T COG3290 463 -----------LVIEVADTGPGIPPEVRDKIFEKGVSTKN--TGGRGIGLYLVKQLVERLGGSIEVESE-KGQGTRFSIY 528 (537)
T ss_pred -----------EEEEEeCCCCCCChHHHHHHHhcCccccC--CCCCchhHHHHHHHHHHcCceEEEeeC-CCCceEEEEE
Confidence 99999999999999999999999887654 458999999999999999999999999 6899999999
Q ss_pred EEeecC
Q 006513 608 LRFQLR 613 (642)
Q Consensus 608 LP~~~~ 613 (642)
+|....
T Consensus 529 iP~~~~ 534 (537)
T COG3290 529 IPKVKE 534 (537)
T ss_pred CCCCcc
Confidence 998754
No 46
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.86 E-value=8.7e-18 Score=190.15 Aligned_cols=250 Identities=11% Similarity=0.110 Sum_probs=168.7
Q ss_pred EEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 276 AIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRA 355 (642)
Q Consensus 276 ~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~ 355 (642)
....|+...++. +|.+..... ....+..+++.++.+++.++......++.++
T Consensus 306 ~~~~~~~~~~~~-------------~g~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 357 (565)
T PRK10935 306 WQILPLTMEDTV-------------LGYLHWQAS----LPCPDEPLMNNVAQMLGRGLYFNQAQKQQQQ----------- 357 (565)
T ss_pred eEEEEEeeCCcc-------------eEEEEecCC----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 456666655444 445555432 2356778899999888887744332222110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH----Hhcc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006513 356 LQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSI----MQDV--NLNSDQRMIVETMMKSSNVLSTLISDVMDNS 429 (642)
Q Consensus 356 L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~l----L~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s 429 (642)
+ ++.+....++||+++|+..+..+... +.+. ...++..+.+..+.+...++...+.+++...
T Consensus 358 ~------------~~~~~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~ 425 (565)
T PRK10935 358 L------------LLMEERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTF 425 (565)
T ss_pred H------------HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 01111234788888888877766543 3322 2234456777777888888888888877644
Q ss_pred cccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEE
Q 006513 430 PKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLF 509 (642)
Q Consensus 430 r~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i 509 (642)
+ ....++++.+.+++++..++.. .++.+.++.+.+.+.....++.++.|++.|++.||+||. +.+.+.+
T Consensus 426 ~-------~~~~~~~l~~~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~-~~~~i~i 494 (565)
T PRK10935 426 R-------LTIQEANLGSALEEMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHA-NASEIAV 494 (565)
T ss_pred C-------CCCCCCCHHHHHHHHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcC-CCCeEEE
Confidence 3 3345789999999999887754 233444433211111233445679999999999999964 5678888
Q ss_pred EEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCC
Q 006513 510 RVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQG 589 (642)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG 589 (642)
.+...++ .++.++|.|+|+|||++. ..|+|+||+||+++++.|||
T Consensus 495 ~~~~~~~--------------------~~~~i~V~D~G~Gi~~~~---------------~~~~glGL~i~~~iv~~~~G 539 (565)
T PRK10935 495 SCVTNPD--------------------GEHTVSIRDDGIGIGELK---------------EPEGHYGLNIMQERAERLGG 539 (565)
T ss_pred EEEEcCC--------------------CEEEEEEEECCcCcCCCC---------------CCCCCcCHHHHHHHHHHcCC
Confidence 8765421 238899999999998742 23789999999999999999
Q ss_pred EEEEEecCCCCceEEEEEEEeec
Q 006513 590 NIWMVPSSHGFAQSMGLVLRFQL 612 (642)
Q Consensus 590 ~I~v~s~~~g~Gt~f~i~LP~~~ 612 (642)
+|+++|. +|+||+|++.||...
T Consensus 540 ~i~v~s~-~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 540 TLTISQP-PGGGTTVSLTFPSQQ 561 (565)
T ss_pred EEEEEEC-CCCcEEEEEEECCCC
Confidence 9999999 589999999999763
No 47
>PRK13559 hypothetical protein; Provisional
Probab=99.85 E-value=2.9e-20 Score=198.28 Aligned_cols=186 Identities=6% Similarity=0.077 Sum_probs=143.3
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHH
Q 006513 370 RNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMI 449 (642)
Q Consensus 370 ~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li 449 (642)
+.+|++.++||+||||+.|.++++++.. ..+..++++.+.+.+..+.++++++++.++ ..++++.+++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~---~~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~~ 237 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGR---ADDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEELI 237 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHHH
Confidence 3457889999999999999999998762 233456788899999999999999987654 3578999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEec-HHHHHHHHHHHHHHhhcc---cCCCCEEEEEEEEecCCCCcccccc
Q 006513 450 KEAACLARCLSIYRGFGFSIEVDRSLPDHVMGD-ERRVFQVILHMVGSLLNC---NSRRGTVLFRVVSENGSQDRNDKKW 525 (642)
Q Consensus 450 ~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D-~~~l~qvl~NLl~NAik~---~~~~g~i~i~~~~~~~~~~~~~~~~ 525 (642)
++++..+... +..+.++.+ +++ +..+ ...+.||+.||+.||+|| ++++|.|.|++....
T Consensus 238 ~~~~~~~~~~----~~~i~~~~~-~~~--~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~---------- 300 (361)
T PRK13559 238 RAQVAPYAPR----ATRVAFEGP-GIR--LGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSP---------- 300 (361)
T ss_pred HHHHHhhcCC----CceEEEECC-Cee--eCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecC----------
Confidence 9988765422 445555432 211 3322 246999999999999999 567899999883221
Q ss_pred ccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHH-cCCEEEEEecCCCCceEE
Q 006513 526 ATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQL-MQGNIWMVPSSHGFAQSM 604 (642)
Q Consensus 526 ~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~-~gG~I~v~s~~~g~Gt~f 604 (642)
.+..+.+.|.|+|.|++++ ..|+|+||.+|+++++. |||++++++. +.|++|
T Consensus 301 ---------~~~~~~i~v~d~G~~~~~~----------------~~~~g~Gl~i~~~~v~~~~gG~i~~~~~--~~G~~~ 353 (361)
T PRK13559 301 ---------EGAGFRIDWQEQGGPTPPK----------------LAKRGFGTVIIGAMVESQLNGQLEKTWS--DDGLLA 353 (361)
T ss_pred ---------CCCeEEEEEECCCCCCCCC----------------CCCCCcHHHHHHHHHHHHcCCeEEEEEc--CCeEEE
Confidence 1223889999999997654 23889999999999996 9999999987 469999
Q ss_pred EEEEEee
Q 006513 605 GLVLRFQ 611 (642)
Q Consensus 605 ~i~LP~~ 611 (642)
+++||+.
T Consensus 354 ~l~~P~~ 360 (361)
T PRK13559 354 RIEIPSR 360 (361)
T ss_pred EEEEeCC
Confidence 9999964
No 48
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.81 E-value=1.4e-19 Score=158.87 Aligned_cols=109 Identities=16% Similarity=0.247 Sum_probs=99.4
Q ss_pred ecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhcc
Q 006513 481 GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQ 560 (642)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~ 560 (642)
||+.++.+++.||++||++|+++++.|.|.+...++. +.|+|.|+|+|||++.++++|+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~---------------------~~i~i~d~G~gi~~~~l~~~~~ 59 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDDH---------------------LSIEISDNGVGIPPEELEKLFE 59 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTE---------------------EEEEEEESSSSTTHHHHHHHCS
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCe---------------------EEEEEEeccccccccccccchh
Confidence 6999999999999999999998889999999887654 9999999999999999999999
Q ss_pred ccccccC--CCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEee
Q 006513 561 LGIRRIV--NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 561 ~f~~~~~--~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
++++... ...+|.|+||++|+.+++.|+|++++++. +++||+|+|.+|+.
T Consensus 60 ~~~~~~~~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~-~~~gt~v~~~~p~~ 111 (111)
T PF02518_consen 60 PFFTSDKSETSISGHGLGLYIVKQIAERHGGELTIESS-EGGGTTVTFTLPLE 111 (111)
T ss_dssp TTSHSSSSSGGSSSSSHHHHHHHHHHHHTTEEEEEEEE-TTTEEEEEEEEEGS
T ss_pred hcccccccccccCCCChHHHHHHHHHHHCCCEEEEEEc-CCCcEEEEEEEECc
Confidence 9987554 23468999999999999999999999999 68999999999973
No 49
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.80 E-value=5.7e-16 Score=161.96 Aligned_cols=332 Identities=13% Similarity=0.186 Sum_probs=221.3
Q ss_pred HHHhhHHHH----HHHHHHHhhhHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCC
Q 006513 152 AWDLGREVG----IIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRN 227 (642)
Q Consensus 152 ~~~L~~e~~----~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~ 227 (642)
...|++.+. .++++.+.+..||..++.+..+....+.++.+++.+....++..+.+-+.++++...+..+.-..
T Consensus 224 Y~~LE~rV~eKT~~L~~~Nq~Ls~LYqssr~L~ts~~~~~~l~~vLn~l~~~~~~~~~~l~l~~~~~e~~h~~~~~~~-- 301 (574)
T COG3850 224 YADLEQRVEEKTRDLEQKNQRLSFLYQSSRRLHTSQIDDERLRHVLNRLQNLTGLAAVRLELYGGDDERNHQEHAEQW-- 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhhcccceEEEEecCcchhhhhhhccCc--
Confidence 355655554 46666777888999999999999999999999999999999988888777665433322211000
Q ss_pred CCCCCCccccCChhHHHHHhcCCeeEeCCCcchhhccCCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEee
Q 006513 228 YSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLP 307 (642)
Q Consensus 228 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~ 307 (642)
.+.. + |. ..+..-.+..|+-..+ ..+|++..
T Consensus 302 ------di~~-----------------~-d~-----------~~~~~~~~~~~l~~~g-------------~~Lg~l~~- 332 (574)
T COG3850 302 ------DISE-----------------G-DQ-----------PSGLKWPQEDPLTQQG-------------HLLGTLPW- 332 (574)
T ss_pred ------ceec-----------------C-CC-----------Ccccchhhhcchhhhh-------------hhheeeec-
Confidence 0000 0 00 0001111112322222 22445443
Q ss_pred CCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 006513 308 NEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHS 387 (642)
Q Consensus 308 ~~~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~ 387 (642)
.+.+..++..+++.++.+++.++...+..++.+ +|.-..+ | +.|+.||.--++.
T Consensus 333 ---~~~l~~~d~~Ll~tl~~~L~rtL~~~~~q~~~q-----------QLllmEE------R------atIAReLHDSiAQ 386 (574)
T COG3850 333 ---QRSLPEDDQQLLDTLVQQLGRTLALNKQQEQQQ-----------QLLLMEE------R------ATIARELHDSIAQ 386 (574)
T ss_pred ---cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH------H------HHHHHHHHHHHHH
Confidence 567888999999999999999996655332221 1221111 1 2344444444444
Q ss_pred HHHHH----HHHhc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHHHHHHHHHHH
Q 006513 388 ILGLL----SIMQD---VNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLS 460 (642)
Q Consensus 388 I~g~~----~lL~~---~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~ 460 (642)
...++ ++|+. +..+++.++.+..|.+..+....-+.++|..-|+ ....-++..-+++.+..+..
T Consensus 387 sLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~AL~~~~~~f~~-- 457 (574)
T COG3850 387 SLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPPALEQMLAEFSN-- 457 (574)
T ss_pred HHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHHHHHHHHHHHHh--
Confidence 44444 34443 2445666889999999998888888888875553 33456777888888777654
Q ss_pred hhcCCeEEEEeCCCCCC-eEEec-HHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceE
Q 006513 461 IYRGFGFSIEVDRSLPD-HVMGD-ERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVH 538 (642)
Q Consensus 461 ~~~~i~~~~~~~~~lp~-~v~~D-~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (642)
+.+++++++.. +|. .+..+ ...+-||+..-+.||+| +..+.+|.|++...++.
T Consensus 458 -qtg~~~~l~~q--lp~~~lpa~qqvHlLqIvREAlsNa~K-Ha~As~i~V~~~~~~g~--------------------- 512 (574)
T COG3850 458 -QTGITVTLDYQ--LPPRALPAHQQVHLLQIVREALSNAIK-HAQASEIKVTVSQNDGQ--------------------- 512 (574)
T ss_pred -ccCCeEEEecc--CCCCCCCHHHHHHHHHHHHHHHHHHHH-hcccCeEEEEEEecCCe---------------------
Confidence 45566665543 342 12222 34688999999999999 67789999999877654
Q ss_pred EEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEe
Q 006513 539 IRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRF 610 (642)
Q Consensus 539 v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~ 610 (642)
+++.|+|||+|||+.. + .+| -.||.|++...+..||.+.+++. +|+||.+.+++|=
T Consensus 513 ~~~~VeDnG~Gi~~~~-----e---------~~g-HyGL~IM~ERA~~L~~~L~i~~~-~~gGT~V~ltf~~ 568 (574)
T COG3850 513 VTLTVEDNGVGIDEAA-----E---------PSG-HYGLNIMRERAQRLGGQLRIRRR-EGGGTEVSLTFPP 568 (574)
T ss_pred EEEEEeeCCcCCCCcc-----C---------CCC-CcchHHHHHHHHHhcCeEEEeec-CCCCeEEEEEecc
Confidence 9999999999998762 1 113 67999999999999999999999 6999999999873
No 50
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.72 E-value=2.6e-16 Score=176.16 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=118.6
Q ss_pred eeHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHH---HHHHHHHhhccc------------CCCCEE
Q 006513 443 FRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQV---ILHMVGSLLNCN------------SRRGTV 507 (642)
Q Consensus 443 ~~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qv---l~NLl~NAik~~------------~~~g~i 507 (642)
+.+..+++..-..++..+...+.++++.+... .+..|+..+.++ +.||+.||++|. +.+|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 34667777777777777777777777776654 378899999988 679999999984 456889
Q ss_pred EEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhh---------------------hhcccccccc
Q 006513 508 LFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVST---------------------SVAQLGIRRI 566 (642)
Q Consensus 508 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~---------------------~if~~f~~~~ 566 (642)
++++...++. +.++|+|+|.||+++.+. .+|+|+|++.
T Consensus 420 ~l~a~~~~~~---------------------v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~ 478 (670)
T PRK10547 420 ILSAEHQGGN---------------------ICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTA 478 (670)
T ss_pred EEEEEEcCCE---------------------EEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccc
Confidence 9998776544 899999999999987653 5899977654
Q ss_pred C--CCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEeecC
Q 006513 567 V--NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 567 ~--~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
. +..+|.|+||.+||++++.|||+|+++|. +|+||+|++.||+...
T Consensus 479 ~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~-~g~Gt~f~i~LPltla 526 (670)
T PRK10547 479 EQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSK-QGKGTTIRILLPLTLA 526 (670)
T ss_pred cccccCCCCchhHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEEechhh
Confidence 3 33469999999999999999999999999 6999999999997653
No 51
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.55 E-value=6e-12 Score=125.37 Aligned_cols=237 Identities=12% Similarity=0.180 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 006513 316 NQELEIVKVVADQV------LVALSHAAVLEESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSIL 389 (642)
Q Consensus 316 ~~e~~ll~~~a~qv------a~al~~a~l~~e~~~~~~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~ 389 (642)
.+..+++-.++.|. ++||++ +-+-.+++..|+.+ +++|. ++-....+..|.+..+.+-+|+..-+++|.
T Consensus 248 s~l~dLll~l~~Qal~Gl~LGiaIqr--lrelnqrL~~EL~~-~raLa--eqListEEsiRk~vARELHDeIGQnITAIr 322 (497)
T COG3851 248 SHLVDLLLSLLAQALTGLGLGIAIQR--LRELNQRLQKELAR-NRALA--EQLISTEESIRKDVARELHDEIGQNITAIR 322 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hHHHH--HHHHhhHHHHHHHHHHHHHHHhcchHHHHH
Confidence 44566666666664 455554 22222233333332 22222 222333455677888888889999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCCeEEE
Q 006513 390 GLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSI 469 (642)
Q Consensus 390 g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~~~~ 469 (642)
.-+.+.++-..++..++....|.+-+-++..-+..++.--| +...+...+.+.++.+++.++ ..++|+...+
T Consensus 323 ~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l~qai~~l~~Em~--~~ergihcq~ 394 (497)
T COG3851 323 TQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTLEQAIRSLLREME--LEERGIHCQL 394 (497)
T ss_pred HHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcC------CcccccccHHHHHHHHHHHhh--hhhcCeEEEe
Confidence 99999988777777788888888888888888888887544 223346677888888877664 5678887777
Q ss_pred EeCCCCCCeEEec---HHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEEC
Q 006513 470 EVDRSLPDHVMGD---ERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLN 546 (642)
Q Consensus 470 ~~~~~lp~~v~~D---~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~ 546 (642)
+...+ ...-| +.-+.++..++++|-+| +.+.+.|+|.....++. +.++|+||
T Consensus 395 ~~~~n---~~~ldet~rvTLyRl~QE~LNNI~K-HA~AS~V~i~l~~~~e~---------------------l~Lei~Dd 449 (497)
T COG3851 395 DWRIN---ETALDETQRVTLYRLCQELLNNICK-HADASAVTIQLWQQDER---------------------LMLEIEDD 449 (497)
T ss_pred ccccC---cccCCcceeEeHHHHHHHHHHHHHh-ccccceEEEEEeeCCcE---------------------EEEEEecC
Confidence 65432 12223 23588999999999999 67888999999876544 88999999
Q ss_pred CCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEE
Q 006513 547 EVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLR 609 (642)
Q Consensus 547 G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP 609 (642)
|.|+|++. +-.|+||.-.++.|.+.||++.++|. .||++.+.||
T Consensus 450 G~Gl~~~~----------------~v~G~Gl~GmrERVsaLGG~ltlssq---~GTrviVnLP 493 (497)
T COG3851 450 GSGLPPGS----------------GVQGFGLTGMRERVSALGGTLTLSSQ---HGTRVIVNLP 493 (497)
T ss_pred CcCCCCCC----------------CccCcCcchHHHHHHHhCCceEEEec---cCcEEEEecc
Confidence 99988652 25789999999999999999999986 4899999999
No 52
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.54 E-value=4e-14 Score=153.24 Aligned_cols=140 Identities=14% Similarity=0.206 Sum_probs=101.5
Q ss_pred EEecHHHHHHHHHHHHHHhhcccCCCC---EEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchh
Q 006513 479 VMGDERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (642)
Q Consensus 479 v~~D~~~l~qvl~NLl~NAik~~~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (642)
...+...|.|++.||++||++|+..+| .|.|.+...+. ++.++.+.|.|||+||+++++
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~------------------~~~~~~I~V~DNG~GIp~e~l 91 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDE------------------GKDHYRVTVEDNGPGIPPEEI 91 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccC------------------CCcEEEEEEEcCCCCCCHHHH
Confidence 445568899999999999999876655 57777754311 123488999999999999999
Q ss_pred hhhccccccccC-----CCCCCccchHHHHHHHHHHcCCE-EEEEecCCCCce-EEEEEEEeecCCCCCCCCCCCCCCCC
Q 006513 556 TSVAQLGIRRIV-----NEGIEDRMSFSVCKKLVQLMQGN-IWMVPSSHGFAQ-SMGLVLRFQLRPSXXXXXXXLLYPYL 628 (642)
Q Consensus 556 ~~if~~f~~~~~-----~~~~G~GLGL~i~k~iv~~~gG~-I~v~s~~~g~Gt-~f~i~LP~~~~~~~~~~~~~~~~~~~ 628 (642)
+++|++|+.+.. ...++.|+||++|+.+++.|+|. +++.|. .+.|+ .|++.+|+......+..-.... .
T Consensus 92 ~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~-~~~g~~~~~~~l~id~~kn~g~i~~~~~---~ 167 (535)
T PRK04184 92 PKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISS-TGGSKKAYYFELKIDTKKNEPIILEREE---V 167 (535)
T ss_pred HHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEe-cCCCceEEEEEEEecccccCCeeccccc---c
Confidence 999999854322 12357999999999999999997 999999 57787 8999998875432221101110 1
Q ss_pred CccCCCCCcccc
Q 006513 629 NLENLRSTHIPI 640 (642)
Q Consensus 629 ~~~~l~~~~ili 640 (642)
....+.|++|.|
T Consensus 168 ~~~~~~GT~V~V 179 (535)
T PRK04184 168 DWDRWHGTRVEL 179 (535)
T ss_pred CCCCCCCEEEEE
Confidence 134467888766
No 53
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.52 E-value=2.2e-10 Score=118.62 Aligned_cols=318 Identities=16% Similarity=0.162 Sum_probs=187.0
Q ss_pred HHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcCCeeEeCCCcchhhccCCCcc
Q 006513 190 YTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESV 269 (642)
Q Consensus 190 ~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 269 (642)
..+.+.+.+.++++ +|..+|.++- +..+ ..+. ...-...++..+....+..+++.+......... .+ ..
T Consensus 228 ~~va~Ii~~~~~~~--AVaiTd~e~i-lA~v-g~g~---dhhi~g~~i~s~~t~~ai~~g~vv~~~~~e~~~-cs---h~ 296 (557)
T COG3275 228 MKVAEIIYEELGAG--AVAITDREKL-LAFV-GIGD---DHHIPGKPIISSLTRKAIKTGEVVYADGNEVYE-CS---HP 296 (557)
T ss_pred HHHHHHHHHHhCCC--eEEecCHHHH-HHhh-cccc---cccCCCCeeccHHHHHHHhhCCEEEEccchhhc-cC---CC
Confidence 34566778888885 4444443321 1100 0000 001123345566778888888877765444311 11 12
Q ss_pred cCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 270 ESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKL 349 (642)
Q Consensus 270 ~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l 349 (642)
.....+++.+|+...+ ..+|.+.+....++.++.-+.++.+-++..+..-++..+ .
T Consensus 297 ~c~l~s~lViPL~~~g-------------~ViGTiK~y~~~~~lis~~~r~la~Gia~l~SaQie~ge-----------~ 352 (557)
T COG3275 297 TCKLGSALVIPLRGKG-------------RVIGTIKLYEAKARLISSINRELAEGIAQLLSAQIEAGE-----------A 352 (557)
T ss_pred CCCcCCceEeecccCC-------------ceeeeEEEEeccHhHhhHHHHHHHHHHHHHHHHHHHHhH-----------H
Confidence 3446778899976443 347899988888888888887777766655544443222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006513 350 EEQNRALQQAQKDALMASQARNAFQKVM-SNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDN 428 (642)
Q Consensus 350 ~~~~~~L~~a~~~~~~a~~~~~~~l~~~-sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 428 (642)
+++.+.+.+|+-.+ +.+-+ .|=|=|-|+.|... .+.+ ++..++. ..+++......|+-
T Consensus 353 e~q~~ll~~AEik~---------LqaQvnPHFLFNaLNTIsa~---IR~n--pdkAreL-------il~LS~yfR~NL~~ 411 (557)
T COG3275 353 ERQRELLKQAEIKA---------LQAQVNPHFLFNALNTISAV---IRRN--PDKAREL-------ILYLSTYFRYNLEN 411 (557)
T ss_pred HHHHHHHHHHHHHH---------HHhccChHHHHHHHHHHHHH---hcCC--hHHHHHH-------HHHHHHHHHHHhcC
Confidence 12222222222111 11222 56666666666533 2221 2222332 23444444433332
Q ss_pred ccccCCCccceeeeeeHHHHHHHHHHHHHHHHh--hcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhccc----C
Q 006513 429 SPKDSGRFPLEIRSFRLHAMIKEAACLARCLSI--YRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCN----S 502 (642)
Q Consensus 429 sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~--~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~----~ 502 (642)
++ .+.+.|.+=++.+-..++-.-. ...+++.+++|+.+-+ +..-+ -+++=|++||+||. .
T Consensus 412 ~~---------~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~-~~iP~----filQPLVENAIKHG~~~~~ 477 (557)
T COG3275 412 NT---------QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQ-VQIPS----FILQPLVENAIKHGISQLK 477 (557)
T ss_pred Cc---------ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhh-ccCch----hhhhHHHHHHHHhcccchh
Confidence 21 2467777777776655542211 2235666666655431 22222 34566788999973 3
Q ss_pred CCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHH
Q 006513 503 RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKK 582 (642)
Q Consensus 503 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~ 582 (642)
++|.|+|++..++.. +.++|+|||.|++|+ ...|+|+||+.+++
T Consensus 478 ~~g~V~I~V~~~d~~---------------------l~i~VeDng~li~p~---------------~~~g~giGL~nv~~ 521 (557)
T COG3275 478 DTGRVTISVEKEDAD---------------------LRIEVEDNGGLIQPD---------------EEDGTGIGLANVHK 521 (557)
T ss_pred cCCceEEEEEEeCCe---------------------EEEEEecCCCCcCCC---------------CCCCCChHHHHHHH
Confidence 578999999887655 999999999999886 22399999999999
Q ss_pred HHHHcCC---EEEEEecCCCCceEEEEEEEeecCC
Q 006513 583 LVQLMQG---NIWMVPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 583 iv~~~gG---~I~v~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
.++.+=| -+.+++. +..||++++.+|.+..+
T Consensus 522 RLk~lyG~~~gl~i~~~-~q~gTri~f~lp~~~~~ 555 (557)
T COG3275 522 RLKLLYGDDEGLHIESL-EQAGTRIIFRLPLQRTA 555 (557)
T ss_pred HHHHhcCccccceEEec-cCCCcEEEEEecCcccc
Confidence 9998777 6888888 47799999999998654
No 54
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.48 E-value=1.6e-11 Score=131.10 Aligned_cols=124 Identities=13% Similarity=0.255 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCcccccccc
Q 006513 448 MIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWAT 527 (642)
Q Consensus 448 li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~ 527 (642)
+...+....+......++.+..+..+..+..-..-+..+.+++...++|++| +.+..++.|++...++.
T Consensus 242 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~r-Ha~A~~v~V~l~~~~~~---------- 310 (365)
T COG4585 242 LVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIR-HAQATEVRVTLERTDDE---------- 310 (365)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHh-ccCCceEEEEEEEcCCE----------
Confidence 3444444444444555566665554322222345578899999999999999 56788899999887665
Q ss_pred ccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEE
Q 006513 528 WRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
++++|.|||.|++++. . +.|+||.-.|+.++..||++.+.|. +|+||+++++
T Consensus 311 -----------l~l~V~DnG~Gf~~~~---------------~-~~~~GL~~mreRv~~lgG~l~i~S~-~g~Gt~i~i~ 362 (365)
T COG4585 311 -----------LRLEVIDNGVGFDPDK---------------E-GGGFGLLGMRERVEALGGTLTIDSA-PGQGTTVTIT 362 (365)
T ss_pred -----------EEEEEEECCcCCCccc---------------c-CCCcchhhHHHHHHHcCCEEEEEec-CCCceEEEEe
Confidence 9999999999976552 1 2679999999999999999999999 5999999999
Q ss_pred EEe
Q 006513 608 LRF 610 (642)
Q Consensus 608 LP~ 610 (642)
+|+
T Consensus 363 lPl 365 (365)
T COG4585 363 LPL 365 (365)
T ss_pred cCC
Confidence 995
No 55
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.48 E-value=6.9e-13 Score=114.77 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=93.6
Q ss_pred ecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhcc
Q 006513 481 GDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQ 560 (642)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~ 560 (642)
+|...+.+++.|+++||++|...++.+.|++...++. +.+.|.|+|.|++++...+.|.
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~~---------------------~~i~i~d~g~g~~~~~~~~~~~ 59 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGDH---------------------LEITVEDNGPGIPPEDLEKIFE 59 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCE---------------------EEEEEEeCCCCCCHHHHHHHhc
Confidence 4788999999999999999877778888888766443 8999999999999999999999
Q ss_pred ccccccC--CCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEee
Q 006513 561 LGIRRIV--NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 561 ~f~~~~~--~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
+++.... ....+.|+||++|+.+++.|+|++++.+. .+.|++|++.+|+.
T Consensus 60 ~~~~~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~~~~ 111 (111)
T smart00387 60 PFFRTDGRSRKIGGTGLGLSIVKKLVELHGGEISVESE-PGGGTTFTITLPLE 111 (111)
T ss_pred CeEECCCCCCCCCcccccHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEeeCC
Confidence 8876442 22457899999999999999999999988 58899999999963
No 56
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.44 E-value=7e-12 Score=141.32 Aligned_cols=145 Identities=14% Similarity=0.202 Sum_probs=113.7
Q ss_pred eHHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHH---HHHHHHHhhccc------------CCCCEEE
Q 006513 444 RLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQV---ILHMVGSLLNCN------------SRRGTVL 508 (642)
Q Consensus 444 ~L~~li~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qv---l~NLl~NAik~~------------~~~g~i~ 508 (642)
.+..++...-..++..+.+-|-++++.+... ....|..-++++ |.||+.||+.|. ++.|+|+
T Consensus 391 P~~~vf~RfpR~VRdla~~lgK~V~L~ieG~---~telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~ 467 (716)
T COG0643 391 PFEQVFSRFPRMVRDLARKLGKQVELVIEGE---DTELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTIT 467 (716)
T ss_pred eHHHHHhhccHHHHHHHHHhCCeeEEEEecC---CeeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEE
Confidence 4455555555555656655555666666554 377898888877 789999999872 3568999
Q ss_pred EEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchh------------------------hhhcccccc
Q 006513 509 FRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS------------------------TSVAQLGIR 564 (642)
Q Consensus 509 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~------------------------~~if~~f~~ 564 (642)
+++..+++. +.|+|+|+|.||+.+.+ .-||.|.|+
T Consensus 468 L~A~~~gn~---------------------ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFS 526 (716)
T COG0643 468 LSAYHEGNN---------------------IVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFS 526 (716)
T ss_pred EEEEcCCCe---------------------EEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCC
Confidence 999988766 99999999999876542 345889887
Q ss_pred ccC--CCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEeecC
Q 006513 565 RIV--NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 565 ~~~--~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
+.. +.-+|-|.||=+||+-++.+||+|.++|. +|+||+|++.||+-..
T Consensus 527 Ta~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~-~G~GT~Fti~LPLTLa 576 (716)
T COG0643 527 TAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSE-PGKGTTFTIRLPLTLA 576 (716)
T ss_pred cchhhhcccCCccCHHHHHHHHHHcCCEEEEEec-CCCCeEEEEecCcHHH
Confidence 664 55679999999999999999999999999 6999999999997543
No 57
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.42 E-value=9.4e-14 Score=160.15 Aligned_cols=242 Identities=23% Similarity=0.263 Sum_probs=194.5
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHHH
Q 006513 373 FQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEA 452 (642)
Q Consensus 373 ~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~~ 452 (642)
+...++||+|+|+.. |....+.+...+.+++.+.......+..+..+++++++.++.+.|..++.-.+|++..++..+
T Consensus 224 ~~~~~sHeir~p~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~ 301 (786)
T KOG0519|consen 224 FLATLSHEIRTPLNG--GMLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFV 301 (786)
T ss_pred hcccccceeeccccc--CcceEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhh
Confidence 999999999999997 555555566788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCc-----------c
Q 006513 453 ACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDR-----------N 521 (642)
Q Consensus 453 ~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~-----------~ 521 (642)
.+.+...+..++..+....+.+.|..+.+|+.++.|++.|+++||+| ....|.+..++......... .
T Consensus 302 ~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik-~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~ 380 (786)
T KOG0519|consen 302 ISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIK-FTHAGHLEESVIAREELSESNDVLLRAKEEAH 380 (786)
T ss_pred hhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceec-ccccceEEEEEEeehhcchhhHHHHhhhhhhh
Confidence 99999999999999999988888999999999999999999999999 56677777776654322110 0
Q ss_pred ccccc----------ccc-c---cCCCC--ceEEEEEEEECCCCCCcchhhh-hcccccc---ccCCCCCCccchHHHHH
Q 006513 522 DKKWA----------TWR-Q---SSVDG--DVHIRFEILLNEVGSQPEVSTS-VAQLGIR---RIVNEGIEDRMSFSVCK 581 (642)
Q Consensus 522 ~~~~~----------~~~-~---~~~~~--~~~v~i~V~D~G~Gi~~e~~~~-if~~f~~---~~~~~~~G~GLGL~i~k 581 (642)
+..+. ..+ + ..+.. -..-.+.+.|+|.+|+...... +|..|-. +..+..+|+|+|+.+|+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~ 460 (786)
T KOG0519|consen 381 MAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVF 460 (786)
T ss_pred hccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhc
Confidence 00000 000 0 00000 1224567899999999998877 7877754 33355679999999999
Q ss_pred HHHHHcCCEEEEEecCCCCceEEEEEEEeecCCCCCC
Q 006513 582 KLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSXXX 618 (642)
Q Consensus 582 ~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~~~~~ 618 (642)
.+++.++|.+...+. ...|++|++.+++....+.+.
T Consensus 461 ~l~~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~ 496 (786)
T KOG0519|consen 461 SLVELMSGEISDISC-ISLGKTFSFTLDLLTNLPKSV 496 (786)
T ss_pred cHHHHHHHHhhhhhh-hccCceeeEEEEeccCCCccc
Confidence 999999999999999 588999999999986655433
No 58
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.40 E-value=3.2e-12 Score=141.00 Aligned_cols=130 Identities=12% Similarity=0.034 Sum_probs=92.2
Q ss_pred hhcCCeEEEEeCCCCCCeEEec--HHHHHHHHHHHHHHhhcccCCCC---EEEEEEEEecCCCCccccccccccccCCCC
Q 006513 461 IYRGFGFSIEVDRSLPDHVMGD--ERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDG 535 (642)
Q Consensus 461 ~~~~i~~~~~~~~~lp~~v~~D--~~~l~qvl~NLl~NAik~~~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (642)
..+.+.+..-+..+.+ .+-.| ...|.+++.|||+||++|...+| .|.|.+...++
T Consensus 21 ~~~~iS~aEfF~kN~~-~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~------------------- 80 (795)
T PRK14868 21 SQREISIAEFFEKNKH-MLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGD------------------- 80 (795)
T ss_pred hccccceeeecccCcc-eeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCC-------------------
Confidence 3456677766666644 34434 67899999999999999877665 57777765432
Q ss_pred ceEEEEEEEECCCCCCcchhhhhcccccccc-------CCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEE
Q 006513 536 DVHIRFEILLNEVGSQPEVSTSVAQLGIRRI-------VNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 536 ~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~-------~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
++.|.|.|||+||++++++++|++|+++. +....|.|||+++|+..+ .+||.+++.|...+.+..+.+.|
T Consensus 81 --~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sql-t~GgpI~I~S~~~~~~~g~~~~L 157 (795)
T PRK14868 81 --YYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQL-TSGKPAKITSRTQGSEEAQYFEL 157 (795)
T ss_pred --EEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHH-cCCCcEEEEeCCCCCCceeEEEE
Confidence 38999999999999999999999986431 123456677777777666 37889999998433344444555
Q ss_pred EeecC
Q 006513 609 RFQLR 613 (642)
Q Consensus 609 P~~~~ 613 (642)
++...
T Consensus 158 ~Id~g 162 (795)
T PRK14868 158 IIDTD 162 (795)
T ss_pred EEecC
Confidence 55544
No 59
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.37 E-value=1e-10 Score=134.65 Aligned_cols=184 Identities=14% Similarity=0.199 Sum_probs=138.5
Q ss_pred HHHHHHhhhHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecC--CCCCCCCCccccCC
Q 006513 162 IMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNG--RNYSDMCSSIPITD 239 (642)
Q Consensus 162 ~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~--~~~~~~~~~i~~~~ 239 (642)
++++....+.+.++++.+.+..|+++++..+++.+.+.+++++|+|+++++++..+.+....+. .........++...
T Consensus 177 L~~~r~~~~~L~eIs~~l~s~~dl~ell~~I~~~i~~~~~a~~~~I~L~d~~~~~L~~~aa~g~~~~~~~~~~~~~~~~~ 256 (686)
T PRK15429 177 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAG 256 (686)
T ss_pred HHhhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCcEEEEEecccChhhcccccccCCccc
Confidence 4444455888999999999999999999999999999999999999999998877765433221 22112233455556
Q ss_pred hhHHHHHhcCCeeEeCCCcchhhcc----CCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCc
Q 006513 240 QDVVRIKGSDGVNILGPDSELAAAS----SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWS 315 (642)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~ 315 (642)
+.+++++.++++.++++........ .......+..+++++||...++. +||+.+.+.....|+
T Consensus 257 ~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~v-------------~GvL~l~~~~~~~F~ 323 (686)
T PRK15429 257 TLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTM-------------LGVLKLAQCEEKVFT 323 (686)
T ss_pred chHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeEEECCEE-------------EEEEEEeeCCCCcCC
Confidence 7899999999999985432211111 00111235688999999866665 778888766778999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 316 NQELEIVKVVADQVLVALSHAAVLEESQHMREKLEEQNRALQQ 358 (642)
Q Consensus 316 ~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~ 358 (642)
+++++++..+|+|+|+|++++..+++.++..+++++.+..+.+
T Consensus 324 ~~dl~lL~~iA~~~A~Aie~a~~~~~~~~~~~~L~~e~~~lt~ 366 (686)
T PRK15429 324 TTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTE 366 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHH
Confidence 9999999999999999999999999988888877766555443
No 60
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.37 E-value=4.4e-10 Score=110.26 Aligned_cols=196 Identities=9% Similarity=0.087 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHH
Q 006513 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (642)
Q Consensus 369 ~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~l 448 (642)
.+..+++.+.|.++|-|+.|.+++.+-.+...++ ..+.+...+.-...|...- +.|.-+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sla~~H-e~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSLALIH-ELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHH-HHHhcC---------CcceEcHHHH
Confidence 3456788999999999999999887765544443 4444444444444444333 333221 2246788888
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCCCCCeEEec-HHHHHHHHHHHHHHhhccc-C--CCCEEEEEEEEecCCCCccccc
Q 006513 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGD-ERRVFQVILHMVGSLLNCN-S--RRGTVLFRVVSENGSQDRNDKK 524 (642)
Q Consensus 449 i~~~~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D-~~~l~qvl~NLl~NAik~~-~--~~g~i~i~~~~~~~~~~~~~~~ 524 (642)
++.+...+.+....+++.+.....+++ .+..| ..-|--++..|+.||+||. + ++|.|.|.+...++..
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~------ 158 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGG------ 158 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCC------
Confidence 888888887765445566666555431 23344 3458899999999999994 3 4799999998875420
Q ss_pred cccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHH-HHcCCEEEEEecCCCCceE
Q 006513 525 WATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLV-QLMQGNIWMVPSSHGFAQS 603 (642)
Q Consensus 525 ~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv-~~~gG~I~v~s~~~g~Gt~ 603 (642)
...+.|.|+|.|+|.+. .. ...|+|+.+++.++ +..||.+...+. + |++
T Consensus 159 -------------~~~l~v~deg~G~~~~~-------------~~-~~~g~G~~Lv~~lv~~q~~g~~~~~~~--~-Gt~ 208 (221)
T COG3920 159 -------------RFLLTVWDEGGGPPVEA-------------PL-SRGGFGLQLVERLVPEQLGGELEDERP--D-GTE 208 (221)
T ss_pred -------------eEEEEEEECCCCCCCCC-------------CC-CCCCcHHHHHHHHHHHHcCCeEEEEcC--C-CEE
Confidence 37789999999988652 11 36789999999999 899999999876 2 999
Q ss_pred EEEEEEeecC
Q 006513 604 MGLVLRFQLR 613 (642)
Q Consensus 604 f~i~LP~~~~ 613 (642)
|++.+|....
T Consensus 209 ~~i~~~~~~~ 218 (221)
T COG3920 209 FRLRFPLSEA 218 (221)
T ss_pred EEEEEecccc
Confidence 9999998643
No 61
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.33 E-value=1.1e-11 Score=133.01 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=85.7
Q ss_pred EEecHHHHHHHHHHHHHHhhcccCCCC---EEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchh
Q 006513 479 VMGDERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (642)
Q Consensus 479 v~~D~~~l~qvl~NLl~NAik~~~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (642)
+.+|...+.+++.||++||++|...+| .|.|.+...++ .++.++|.|||+||+++++
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~--------------------~~~~I~V~DNG~GIp~edl 81 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGK--------------------DHYKVTVEDNGPGIPEEYI 81 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCC--------------------ceEEEEEEECCCCCCHHHH
Confidence 567889999999999999999876555 67777654321 2378999999999999999
Q ss_pred hhhccccccccC-----CCCCCccchHHHHHHHHHHcCCE-EEEEecCCCCceEEEEEEE
Q 006513 556 TSVAQLGIRRIV-----NEGIEDRMSFSVCKKLVQLMQGN-IWMVPSSHGFAQSMGLVLR 609 (642)
Q Consensus 556 ~~if~~f~~~~~-----~~~~G~GLGL~i~k~iv~~~gG~-I~v~s~~~g~Gt~f~i~LP 609 (642)
+++|++|+++.. ...++.|+||++|+.+.+.|+|+ +++.|.+ + |..|...+.
T Consensus 82 ~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~-~-g~~~~~~~~ 139 (488)
T TIGR01052 82 PKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISST-G-GEIYVYKMK 139 (488)
T ss_pred HhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEec-C-CceEEEEEE
Confidence 999999876433 12357999999999999999998 9999983 4 665533333
No 62
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.29 E-value=2.5e-11 Score=134.00 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=89.8
Q ss_pred EEecHHH---HHHHHHHHHHHhhcccCCCC---EEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCc
Q 006513 479 VMGDERR---VFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQP 552 (642)
Q Consensus 479 v~~D~~~---l~qvl~NLl~NAik~~~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~ 552 (642)
+.++... |.+++.||++||++|...++ .|.|.+...+ ..++.+.|.|||+|||+
T Consensus 27 ~lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g--------------------~~~~~I~V~DNG~GIp~ 86 (659)
T PRK14867 27 MLGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLG--------------------SDHYKVAVEDNGPGIPP 86 (659)
T ss_pred eeechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC--------------------CcEEEEEEEeeCeeCCH
Confidence 3445444 45999999999999866544 6777775432 12388999999999999
Q ss_pred chhhhhccccccccC-----CCCCCccchHHHHHHHHHHc-CCEEEEEecCCCCceEEEEEEEeecC
Q 006513 553 EVSTSVAQLGIRRIV-----NEGIEDRMSFSVCKKLVQLM-QGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 553 e~~~~if~~f~~~~~-----~~~~G~GLGL~i~k~iv~~~-gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
++++++|++|+++.. ...++.|+||+++..+.+.+ ||.+++.|. .+.|++|++.+|+...
T Consensus 87 e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~-~g~G~~f~i~L~i~i~ 152 (659)
T PRK14867 87 EFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTS-TGDGKIHEMEIKMSVE 152 (659)
T ss_pred HHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEE-cCCCEEEEEEEEEEec
Confidence 999999999876432 33457899999999999865 667999998 5889999999999763
No 63
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.29 E-value=3e-11 Score=102.67 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhhcccCC-CCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhcccccc
Q 006513 486 VFQVILHMVGSLLNCNSR-RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIR 564 (642)
Q Consensus 486 l~qvl~NLl~NAik~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~ 564 (642)
+.+++.++++||++|... ++.+.|.+...++. +.+.|.|+|.|++++..++.|.++..
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~~---------------------~~v~i~d~g~g~~~~~~~~~~~~~~~ 59 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDH---------------------LEIRVEDNGPGIPEEDLERIFERFSD 59 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecCCE---------------------EEEEEEeCCCCCCHHHHHHHhhhhhc
Confidence 368899999999997665 67788888765433 89999999999999999999887611
Q ss_pred -ccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEE
Q 006513 565 -RIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 565 -~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
.......+.|+||++|+++++.|||++++.+. .+.|++|++.+
T Consensus 60 ~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~ 103 (103)
T cd00075 60 GSRSRKGGGTGLGLSIVKKLVELHGGRIEVESE-PGGGTTFTITL 103 (103)
T ss_pred CCCCCCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCcEEEEEEC
Confidence 11223458999999999999999999999988 56799998763
No 64
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.26 E-value=5.4e-11 Score=108.43 Aligned_cols=99 Identities=9% Similarity=0.065 Sum_probs=79.3
Q ss_pred ecHHHHHHHHHHHHHHhhccc---CCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhh
Q 006513 481 GDERRVFQVILHMVGSLLNCN---SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTS 557 (642)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~---~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~ 557 (642)
.|...+.+++.|+++||++|. +.++.|.|++...++. +.++|.|+|+|+++ .++
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~---------------------~~i~I~D~G~gi~~--~~~ 91 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHE---------------------VYITVRDEGIGIEN--LEE 91 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCE---------------------EEEEEEEcCCCcCc--hhH
Confidence 456679999999999999974 3367888888766544 89999999999973 668
Q ss_pred hccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEE
Q 006513 558 VAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 558 if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
+|++|+.... ...+.|+||+++++ +.+++++++. +++|++|+++.
T Consensus 92 ~~~~~~~~~~-~~~~~GlGL~lv~~----~~~~l~~~~~-~~~Gt~v~i~~ 136 (137)
T TIGR01925 92 AREPLYTSKP-ELERSGMGFTVMEN----FMDDVSVDSE-KEKGTKIIMKK 136 (137)
T ss_pred hhCCCcccCC-CCCCCcccHHHHHH----hCCcEEEEEC-CCCCeEEEEEe
Confidence 8999886543 34589999999876 4579999998 58999998863
No 65
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.24 E-value=2.7e-11 Score=95.98 Aligned_cols=66 Identities=27% Similarity=0.556 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHhc-cCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 006513 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQD-VNLNSDQ-RMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (642)
Q Consensus 369 ~~~~~l~~~sHelrtPL~~I~g~~~lL~~-~~~~~~~-~~~l~~i~~~~~~l~~li~~ll~~sr~e~~ 434 (642)
++++|++.++|||||||++|.++++++.+ ...++++ +++++.|..+++++.++++++++++|.++|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 36789999999999999999999999998 7788887 999999999999999999999999999876
No 66
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.23 E-value=4e-07 Score=90.38 Aligned_cols=194 Identities=12% Similarity=0.150 Sum_probs=131.2
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceee---eeeHHHH
Q 006513 372 AFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIR---SFRLHAM 448 (642)
Q Consensus 372 ~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~---~~~L~~l 448 (642)
.+...+-..+..-|-+..-.+++....-.++.+ .....|.++++.|+.-|+++..+|.- +.+. ..-|...
T Consensus 253 rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH~------LRP~~LDDLGL~aA 325 (459)
T COG4564 253 RLARELHDGISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISHD------LRPRALDDLGLTAA 325 (459)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhccc------cChhhhhhhhHHHH
Confidence 344444334445555666666666543222221 22256788889999999999887752 2222 2233344
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCCCCCe-EEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCcccccccc
Q 006513 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDH-VMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWAT 527 (642)
Q Consensus 449 i~~~~~~~~~~~~~~~i~~~~~~~~~lp~~-v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~ 527 (642)
++..++.++ ...|+.++++.+.. |.. ...-...+.+|...-+.|-=+| .+..+|+|.....++.
T Consensus 326 Le~L~~~f~---~~tg~~itle~~~~-p~~l~~e~~talyRv~QEaltNIErH-a~Atrv~ill~~~~d~---------- 390 (459)
T COG4564 326 LEALLEDFK---ERTGIEITLEFDTQ-PGKLKPEVATALYRVVQEALTNIERH-AGATRVTILLQQMGDM---------- 390 (459)
T ss_pred HHHHHHHhh---hccCeEEEEEecCC-cccCCcHHHHHHHHHHHHHHHHHHhh-cCCeEEEEEeccCCcc----------
Confidence 444444333 55677877776543 322 2233567999999999998885 4778888888776665
Q ss_pred ccccCCCCceEEEEEEEECCCCCCcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEE
Q 006513 528 WRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 528 ~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
+++.|+|||+|++.+... ..-.|+||-.+++.+...||.+.++|.| +||..++.
T Consensus 391 -----------vql~vrDnG~GF~~~~~~-------------~~~~GiGLRNMrERma~~GG~~~v~s~p--~GTel~v~ 444 (459)
T COG4564 391 -----------VQLMVRDNGVGFSVKEAL-------------QKRHGIGLRNMRERMAHFGGELEVESSP--QGTELTVL 444 (459)
T ss_pred -----------eEEEEecCCCCccchhhc-------------cCccccccccHHHHHHHhCceEEEEecC--CCcEEEEE
Confidence 999999999997755321 1137999999999999999999999994 49999999
Q ss_pred EEeecC
Q 006513 608 LRFQLR 613 (642)
Q Consensus 608 LP~~~~ 613 (642)
||....
T Consensus 445 Lp~~~~ 450 (459)
T COG4564 445 LPLDAS 450 (459)
T ss_pred ecchhh
Confidence 998643
No 67
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=99.22 E-value=1.4e-09 Score=124.78 Aligned_cols=161 Identities=12% Similarity=0.131 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcC
Q 006513 170 VHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSD 249 (642)
Q Consensus 170 ~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 249 (642)
..++++++.+.++.|++++++.+++.+.+.+++++|.||+.++++..+.+....+..........++.+++.++++..++
T Consensus 3 ~~L~eIs~~L~s~~dL~e~L~~Iv~~~~~~l~~d~~sI~L~D~~~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~tg 82 (748)
T PRK11061 3 TRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLA 82 (748)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEeeCCChHhccceeccCCcchHHHHhccC
Confidence 45889999999999999999999999999999999999999988877776655553222222345677888999999999
Q ss_pred CeeEeCCCcchhhccC-CCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHH
Q 006513 250 GVNILGPDSELAAASS-GESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQ 328 (642)
Q Consensus 250 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~q 328 (642)
+++.+.+-........ ....+.+.++.+++||.+.++. +|||++.+..++.|++++.+++..+|+|
T Consensus 83 ~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VPL~~~geV-------------IGVL~v~~~~~~~Fs~~d~~lL~~LA~~ 149 (748)
T PRK11061 83 EPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIYRRQL-------------LGVLVVQQRELRQFDESEESFLVTLATQ 149 (748)
T ss_pred ceEEECCcccCcccccCccccCccceEEEEEEEeeCCEE-------------EEEEEEeeCCCCCCCHHHHHHHHHHHHH
Confidence 9999965443322211 1123467889999999866554 8899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 006513 329 VLVALSHAAVLEESQ 343 (642)
Q Consensus 329 va~al~~a~l~~e~~ 343 (642)
+|++++|+++.+...
T Consensus 150 aAiAL~na~l~~~~~ 164 (748)
T PRK11061 150 LAAILSQSQLTALFG 164 (748)
T ss_pred HHHHHHHHhhccccc
Confidence 999999998876663
No 68
>PRK03660 anti-sigma F factor; Provisional
Probab=99.19 E-value=2.6e-10 Score=105.16 Aligned_cols=105 Identities=11% Similarity=0.077 Sum_probs=81.7
Q ss_pred ecHHHHHHHHHHHHHHhhcccC---CCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhh
Q 006513 481 GDERRVFQVILHMVGSLLNCNS---RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTS 557 (642)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~~---~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~ 557 (642)
.|...+.+++.|++.||++|.. .++.|.+++...++. +.++|.|+|+|+++ ..+
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~---------------------l~i~I~D~G~g~~~--~~~ 91 (146)
T PRK03660 35 EELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEE---------------------LEITVRDEGKGIED--IEE 91 (146)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCE---------------------EEEEEEEccCCCCh--HHH
Confidence 3567799999999999998743 236788887665433 89999999999986 557
Q ss_pred hccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEeecCC
Q 006513 558 VAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 558 if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
.|++|++... ...+.|+||+++++ +.+++++++. ++.|++|+++.++..+.
T Consensus 92 ~~~~~~~~~~-~~~~~GlGL~i~~~----~~~~i~~~~~-~~~Gt~~~i~~~~~~~~ 142 (146)
T PRK03660 92 AMQPLYTTKP-ELERSGMGFTVMES----FMDEVEVESE-PGKGTTVRMKKYLKKSK 142 (146)
T ss_pred hhCCCcccCC-CCCCccccHHHHHH----hCCeEEEEec-CCCcEEEEEEEEecccc
Confidence 7888876433 22478999998874 5678999998 58899999999987553
No 69
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.11 E-value=3.3e-08 Score=108.64 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhhccc----CCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccc
Q 006513 486 VFQVILHMVGSLLNCN----SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQL 561 (642)
Q Consensus 486 l~qvl~NLl~NAik~~----~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~ 561 (642)
...++..|++||++|. .++|.|.|.+...++. +.++|.|||+||+++....+...
T Consensus 351 p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~---------------------i~i~i~Dng~g~~~~~~~~~~~~ 409 (456)
T COG2972 351 PKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDV---------------------IQISISDNGPGIDEEKLEGLSTK 409 (456)
T ss_pred chHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCE---------------------EEEEEeeCCCCCChhHHHHHHhh
Confidence 4456778899999874 5677888888776443 99999999999999877666443
Q ss_pred cccccCCCCCC-ccchHHHHHHHHHHcCCE--EEEEecCCCCceEEEEEEEeec
Q 006513 562 GIRRIVNEGIE-DRMSFSVCKKLVQLMQGN--IWMVPSSHGFAQSMGLVLRFQL 612 (642)
Q Consensus 562 f~~~~~~~~~G-~GLGL~i~k~iv~~~gG~--I~v~s~~~g~Gt~f~i~LP~~~ 612 (642)
- ++ .|+||.-++++++.|-|. +.++|. +++||...+.+|...
T Consensus 410 ~--------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~-~~~gt~v~~~~~~~~ 454 (456)
T COG2972 410 G--------ENRSGIGLSNVKERLKLYFGEPGLSIDSQ-PGKGTFVQIIIPKRE 454 (456)
T ss_pred c--------cCcccccHHHHHHHHHHeeCCcceeEeec-CCCcEEEEEEeehhh
Confidence 1 12 599999999999999887 588999 699999999999764
No 70
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.02 E-value=1.6e-08 Score=113.29 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=119.7
Q ss_pred hhHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhc
Q 006513 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGS 248 (642)
Q Consensus 169 ~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 248 (642)
+..++++++.+.++.|++++++.+++.+.+.+++++|+|+++++++..+... ..+..........++.+++.+++++.+
T Consensus 4 L~~L~~is~~l~~~~dl~~lL~~il~~l~~~l~a~~~~I~L~d~~~~~l~~a-a~g~~~~~~~~~~~~~~~gi~g~v~~~ 82 (534)
T TIGR01817 4 LAALYEISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVA-AIGWSEEGFAPIRYRVGEGAIGQIVAT 82 (534)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCEEEEEEECCCCCEEEEE-EeCCChhhcccccccCCccHHHHHHhc
Confidence 5668999999999999999999999999999999999999998876654332 222111111224566678889999999
Q ss_pred CCeeEeCCCcchhhcc-CCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCC-ccCCchhHHHHHHHHH
Q 006513 249 DGVNILGPDSELAAAS-SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQ-FRTWSNQELEIVKVVA 326 (642)
Q Consensus 249 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~-~~~~~~~e~~ll~~~a 326 (642)
++++++.+........ .......+..+.+++|+...++. +||+++.+.. .+.|+++++++++.+|
T Consensus 83 ~~pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VPL~~~g~v-------------iGvL~v~s~~~~~~ft~~d~~lL~~lA 149 (534)
T TIGR01817 83 GNSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVPIKADSET-------------IGVLAADRDFRSRERLEEEVRFLEMVA 149 (534)
T ss_pred CCeEEecccccCchhhhccccccCCcceEEEEEEcCCCEE-------------EEEEEEEeccccccccHHHHHHHHHHH
Confidence 9999986544332221 11123456889999998755554 7899998874 5678999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 006513 327 DQVLVALSHAAVLE 340 (642)
Q Consensus 327 ~qva~al~~a~l~~ 340 (642)
+++|.++..++++.
T Consensus 150 ~~ia~aI~~~~~~~ 163 (534)
T TIGR01817 150 NLIGQTVRLHRLVA 163 (534)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998777655
No 71
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=98.98 E-value=1.2e-08 Score=91.09 Aligned_cols=129 Identities=20% Similarity=0.257 Sum_probs=98.4
Q ss_pred chhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcCCeeEeCCCcchhhc
Q 006513 184 DRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAA 263 (642)
Q Consensus 184 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 263 (642)
|++++++.+++.+.+.+++++++||+.++++..+...+.+++... ....+|...+.+.++..++++.........
T Consensus 1 dl~~l~~~i~~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 75 (129)
T PF13492_consen 1 DLDELLERILELLRELLGADRAALFLLDEDGNRLRVVAGWGGDPR--LSESLPEDDPLIGRALETGEPVSVPDIDER--- 75 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-SEEEEEEEETTCECEEEEEEESS-GC--GHHCEETTSHHHHHHHHHTS-EEESTCCC----
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEEeCCCcc--ccccCCCCccHHHHHHhhCCeEEecccccc---
Confidence 678999999999999999999999999998888888877733321 223667778889999999987655332111
Q ss_pred cCCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHHHHHHHHH
Q 006513 264 SSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSH 335 (642)
Q Consensus 264 ~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~ 335 (642)
...+..+.+++|+...++. +|++++.....+.|+++++++++.+|+++|.+++|
T Consensus 76 -----~~~~~~s~~~vPl~~~~~~-------------~Gvl~~~~~~~~~~~~~d~~~l~~~a~~~a~alen 129 (129)
T PF13492_consen 76 -----DFLGIRSLLVVPLRSRDRV-------------IGVLCLDSREPEEFSDEDLQLLESLANQLAIALEN 129 (129)
T ss_dssp -----TTTTTCEEEEEEEEETTEE-------------EEEEEEEECTTCG-SHHHHHHHHHHHHHHHHHHH-
T ss_pred -----cCCCCCEEEEEEEeECCEE-------------EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 1145678899999977766 67888877778899999999999999999999975
No 72
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=98.95 E-value=6e-09 Score=96.24 Aligned_cols=137 Identities=15% Similarity=0.183 Sum_probs=104.3
Q ss_pred chhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcCCeeEeCCCcchhhc
Q 006513 184 DRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAA 263 (642)
Q Consensus 184 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 263 (642)
|++++++.+++.+.+.+++++|++++++.++..+...+..+...........+...+...++..+.++.++.+.......
T Consensus 1 Dl~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 80 (154)
T PF01590_consen 1 DLDELLQRILRELAELLGADRASIFLLDPDGNRLYSVAGVGLPDPPPGGRRLSMDESICGQVLQSREPIVISDVAADPRF 80 (154)
T ss_dssp SHHHHHHHHHHHHHHHHTESEEEEEEEETTTTEEEEEEEEEGGGSEHHHEEEETTSSHHHHHHHHTSCEEESSSGGSTTS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEecCCCeEEEEEeecccccccccccccccccHHHHHHhCCCeEeeccccccccc
Confidence 68899999999999999999999999999988887666665443322234455557779999999999998665433321
Q ss_pred cCC----------------CcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCc-cCCchhHHHHHHHHH
Q 006513 264 SSG----------------ESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQF-RTWSNQELEIVKVVA 326 (642)
Q Consensus 264 ~~~----------------~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~-~~~~~~e~~ll~~~a 326 (642)
... ...+.+.++.+++|+...++. +|++++....+ +.|+++|+++++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~g~~-------------~G~l~l~~~~~~~~~~~~d~~ll~~~a 147 (154)
T PF01590_consen 81 APQIAAQSALRALSSAERPFLAEYGVRSYLCVPIISGGRL-------------IGVLSLYRTRPGRPFTEEDLALLESFA 147 (154)
T ss_dssp SCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEEEEETTEE-------------EEEEEEEEESSSSS--HHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCceeeEeeeecccCc-------------EEEEEEEECCCCCCcCHHHHHHHHHHH
Confidence 110 011568999999998766554 78999988877 999999999999999
Q ss_pred HHHHHHH
Q 006513 327 DQVLVAL 333 (642)
Q Consensus 327 ~qva~al 333 (642)
++++++|
T Consensus 148 ~~~a~ai 154 (154)
T PF01590_consen 148 QQLAIAI 154 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999986
No 73
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.90 E-value=1.8e-08 Score=94.41 Aligned_cols=105 Identities=9% Similarity=-0.012 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHHHHHhhcccCC---CCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhh
Q 006513 482 DERRVFQVILHMVGSLLNCNSR---RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSV 558 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~i 558 (642)
+...+..++.+++.||++|... ++.|.|++...++. +.+.|.|+|+|++++.....
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~---------------------l~i~V~D~G~g~d~~~~~~~ 97 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDR---------------------LEIVVADNGVSFDYETLKSK 97 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCE---------------------EEEEEEECCcCCChHHhccc
Confidence 4456788999999999998543 46788888766543 99999999999999988888
Q ss_pred ccccccccC-CCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEeecCC
Q 006513 559 AQLGIRRIV-NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 559 f~~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
|.++++... ....+.|+||+++++++.. +.+.+. .|+++++.-.+....
T Consensus 98 ~~p~~~~~~~~~~~~~G~GL~li~~l~d~----v~~~~~---~G~~v~~~k~~~~~~ 147 (161)
T PRK04069 98 LGPYDISKPIEDLREGGLGLFLIETLMDD----VTVYKD---SGVTVSMTKYINREQ 147 (161)
T ss_pred cCCCCCCCcccccCCCceeHHHHHHHHHh----EEEEcC---CCcEEEEEEEcCchh
Confidence 888775433 2234779999999999986 566643 478888886665443
No 74
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.81 E-value=2.2e-07 Score=103.44 Aligned_cols=166 Identities=13% Similarity=0.090 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCC-hhHHHHHhc
Q 006513 170 VHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITD-QDVVRIKGS 248 (642)
Q Consensus 170 ~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~ 248 (642)
..++++++.|.+++|.+++++.++..+.+.++++.|.|++++.+ .+......+..... ....++..+ |.+..+..+
T Consensus 4 ~~l~eis~~L~~s~d~~e~L~~vl~~l~~~l~~~~~~l~l~~~~--~l~~~as~gl~~~~-~~~~~~~geGP~l~av~~~ 80 (509)
T PRK05022 4 DALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGD--QLVPLAIDGLSPDV-LGRRFALEEHPRLEAILRA 80 (509)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCC--cEEEEEEcCCChHh-hCCccCCCcchHHHHHHhc
Confidence 45889999999999999999999999999999999999888754 44443333222111 112344444 467777777
Q ss_pred CCeeEeCCCcchhhcc----CCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHH
Q 006513 249 DGVNILGPDSELAAAS----SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKV 324 (642)
Q Consensus 249 ~~~~~l~~~~~~~~~~----~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~ 324 (642)
+.++++.++...+.+. .....+.|..+.+++|+...++. +|+|.+....+..|++++.+++..
T Consensus 81 g~~v~v~~~~~~p~~~~~~~~~~~~~~gi~S~l~vPL~~~~~~-------------~GvL~l~~~~~~~f~~~~~~~l~~ 147 (509)
T PRK05022 81 GDPVRFPADSELPDPYDGLIPGVQESLPVHDCMGLPLFVDGRL-------------IGALTLDALDPGQFDAFSDEELRA 147 (509)
T ss_pred CCeEEEecCCCCCcccccccccccccCCcceEEEEEEEECCEE-------------EEEEEEeeCCCCcCCHHHHHHHHH
Confidence 8888776554433211 11123457789999999865544 789999888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 325 VADQVLVALSHAAVLEESQHMREKLEE 351 (642)
Q Consensus 325 ~a~qva~al~~a~l~~e~~~~~~~l~~ 351 (642)
+|.+++.|+.++..+++.++..++++.
T Consensus 148 ~a~~~a~Al~~a~~~~~l~~~~~~~~~ 174 (509)
T PRK05022 148 LAALAAATLRNALLIEQLESQAELPQD 174 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988776655555443
No 75
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=98.81 E-value=1.7e-07 Score=84.01 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=100.9
Q ss_pred chhhHHHHHHHHHHhHhCCcEEEEEEEcCC-CCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcCCeeEeCCCcchhh
Q 006513 184 DRHTILYTTLVELSNTLGLQNCAVWMPNEI-KTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAA 262 (642)
Q Consensus 184 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~-~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (642)
|.++++..++..+.+.++++++++++.+++ ...+......+... ......++..++....+..++++..+.+......
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (149)
T smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDEDDRGELVLVAADGLTL-PLLGLRYPLGEGLAGRVAETGRPLNIPDVEADPV 79 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEEEecCCCCcEEEEEecCCCc-ccceEEecCCCChHHHHHHcCCeEEeechhhCCc
Confidence 467889999999999999999999999874 33333332222211 1123345666677888888888877754332221
Q ss_pred ccCCCc-ccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCC-CccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 263 ASSGES-VESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNE-QFRTWSNQELEIVKVVADQVLVALSHAAVLE 340 (642)
Q Consensus 263 ~~~~~~-~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~-~~~~~~~~e~~ll~~~a~qva~al~~a~l~~ 340 (642)
...... ...+..+.+++|+...++. +|++++... ..+.|++++.++++.++++++.++++.++.+
T Consensus 80 ~~~~~~~~~~~~~s~~~~Pl~~~~~~-------------~G~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~ 146 (149)
T smart00065 80 FALDLLGRYQGVRSFLAVPLVADGEL-------------VGVLALHNKDSPRPFTEEDEELLQALANQLAIALANAQLYE 146 (149)
T ss_pred cccccccceeceeeEEEeeeeecCEE-------------EEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1233788999998866555 667777776 6889999999999999999999999988665
Q ss_pred H
Q 006513 341 E 341 (642)
Q Consensus 341 e 341 (642)
+
T Consensus 147 ~ 147 (149)
T smart00065 147 E 147 (149)
T ss_pred h
Confidence 4
No 76
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=98.76 E-value=1.3e-07 Score=86.53 Aligned_cols=137 Identities=17% Similarity=0.219 Sum_probs=89.2
Q ss_pred cchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChh-HH--------HHHhcCCeeE
Q 006513 183 LDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQD-VV--------RIKGSDGVNI 253 (642)
Q Consensus 183 ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~-~~--------~~~~~~~~~~ 253 (642)
.|++++++.+++.+.+.++++.++||+.|+++......+..............+..... .. .+..++++..
T Consensus 2 ~~~~ell~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PF13185_consen 2 EDLEELLQQILDALLELTGADAGAIYLYDPDGQLLPVAASGDPSEFLKEEIPLPPPPDEPPAYAAVGLWEGVLRTGEPII 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SEEEEEEEETTSEEEEEEEESSSCTSTCCECCCCCCCESCHHHCCEETTSHHHHHTS-EE
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCcEEEEEEeCCchhhhhhhcccCcccccccchhhhhHHHHHHhcCceEE
Confidence 47889999999999999999999999998777333333333222111111112222111 11 1277888888
Q ss_pred eC-CCcchhhccCCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHHHHHH
Q 006513 254 LG-PDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVA 332 (642)
Q Consensus 254 l~-~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~qva~a 332 (642)
++ ++..... .......+..+.+++||...+++ +|++++.+..++.|+++++++++.+|++++.+
T Consensus 82 ~~~~~~~~~~--~~~~~~~~~~s~l~vPl~~~~~~-------------~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~a 146 (148)
T PF13185_consen 82 INDDDSSFPP--WELARHPGIRSILCVPLRSGGEV-------------IGVLSLYSKEPNAFSEEDLELLEALADQIAIA 146 (148)
T ss_dssp ESCCCGGGST--THHHCCTT-SEEEEEEEEETTEE-------------EEEEEEEESSTT---HHHHHHHHHHHHHHHHH
T ss_pred EeCccccccc--hhhhccccCCEEEEEEEeECCEE-------------EEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 88 2221111 22334678999999999977766 77999999888999999999999999999999
Q ss_pred HH
Q 006513 333 LS 334 (642)
Q Consensus 333 l~ 334 (642)
|+
T Consensus 147 ie 148 (148)
T PF13185_consen 147 IE 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 77
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.74 E-value=1.1e-07 Score=88.61 Aligned_cols=103 Identities=3% Similarity=-0.061 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhhcccC---CCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhcc
Q 006513 484 RRVFQVILHMVGSLLNCNS---RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQ 560 (642)
Q Consensus 484 ~~l~qvl~NLl~NAik~~~---~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~ 560 (642)
..+..++.+++.||++|.. +++.|.|.+...++. +.+.|+|+|+|++++.+...|.
T Consensus 41 ~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~---------------------l~i~V~D~G~gfd~~~~~~~~~ 99 (159)
T TIGR01924 41 EDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDR---------------------LEIIVSDQGDSFDMDTFKQSLG 99 (159)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCE---------------------EEEEEEEcccccCchhhccccC
Confidence 4577899999999999853 346888888776544 9999999999999998888777
Q ss_pred ccccccC-CCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEeecCC
Q 006513 561 LGIRRIV-NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 561 ~f~~~~~-~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
+++.... ....+.|+||+++|++++ ++.+++. +|+++++...+...+
T Consensus 100 ~~~~~~~~~~~~~~G~GL~Li~~L~D----~v~~~~~---~G~~l~l~k~~~~~~ 147 (159)
T TIGR01924 100 PYDGSEPIDDLREGGLGLFLIETLMD----EVEVYED---SGVTVAMTKYLNREQ 147 (159)
T ss_pred CCCCCCCcccCCCCccCHHHHHHhcc----EEEEEeC---CCEEEEEEEEEcccc
Confidence 7654332 223467999999999988 5677664 367788876665443
No 78
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.74 E-value=3.2e-07 Score=105.97 Aligned_cols=172 Identities=11% Similarity=0.000 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEec-CCCCCCCCCccccCChhHHHHHh
Q 006513 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLN-GRNYSDMCSSIPITDQDVVRIKG 247 (642)
Q Consensus 169 ~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~ 247 (642)
...|.++|+.+.+..|+++++..+...+.+.+.++++.|.++|+....+.. +... ...............+..+++..
T Consensus 8 ~~~l~~is~~~~~~~~~~~l~~~l~~~~~~~~~ad~~~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~g~vl~ 86 (686)
T PRK15429 8 QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASY-YASREKGTPVKYEDETVLAHGPVRRILS 86 (686)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccceEEEEEEcCCCCeeee-eeccccccchhccchhhhccCcceEEee
Confidence 345888999999999999999999999999999999999999987766654 2222 11111111222344556778888
Q ss_pred cCCeeEeCCCcchh----hccCCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHH
Q 006513 248 SDGVNILGPDSELA----AASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVK 323 (642)
Q Consensus 248 ~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~ 323 (642)
++++.+.+...... ..... .-++..+++.+||...+.. +|++++.....+.|+++|.+++.
T Consensus 87 ~~~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~lgvPl~~~~~v-------------~G~l~l~~~~~~~Ft~~d~~ll~ 151 (686)
T PRK15429 87 RPDTLHCSYEEFCETWPQLAAGG--LYPKFGHYCLMPLAAEGHI-------------FGGCEFIRYDDRPWSEKEFNRLQ 151 (686)
T ss_pred cCceEEEchHHhhhccHHHhhcc--cccCccceEEeceeeCCee-------------EEEEEEEEcCCCCCCHHHHHHHH
Confidence 88888775543322 11111 1234555777888766555 77999888878999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 324 VVADQVLVALSHAAVLEESQHMREKLEEQNRAL 356 (642)
Q Consensus 324 ~~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L 356 (642)
.+|.++++|++|++++++.++..+.++++..++
T Consensus 152 ~la~~a~~aie~~~~~e~~~~~~~~L~~~r~~~ 184 (686)
T PRK15429 152 TFTQIVSVVTEQIQSRVVNNVDYELLCRERDNF 184 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999888777775554443
No 79
>PF14501 HATPase_c_5: GHKL domain
Probab=98.68 E-value=2.6e-07 Score=79.15 Aligned_cols=96 Identities=11% Similarity=0.209 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHHHHHhhcccCC---CCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhh
Q 006513 482 DERRVFQVILHMVGSLLNCNSR---RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSV 558 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~i 558 (642)
|+..+-.+|.||++||+++... ...|.+.+...++. +.|.|+..-.+ + .+.+
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~---------------------~~i~i~N~~~~---~-~~~~ 56 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREENGF---------------------LVIIIENSCEK---E-IEKL 56 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCE---------------------EEEEEEECCCC---c-cccc
Confidence 5567889999999999997433 56788888776544 88889887544 1 1222
Q ss_pred ccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEE
Q 006513 559 AQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLR 609 (642)
Q Consensus 559 f~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP 609 (642)
+ ....+..+.|+||..++++++.++|++.++.. .+ =-++++.||
T Consensus 57 ~-----~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~-~~-~f~~~i~ip 100 (100)
T PF14501_consen 57 E-----SSSSKKKGHGIGLKNVKKILEKYNGSLSIESE-DG-IFTVKIVIP 100 (100)
T ss_pred c-----ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEE-CC-EEEEEEEEC
Confidence 2 12335568999999999999999999999887 23 345555554
No 80
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.62 E-value=6e-06 Score=83.85 Aligned_cols=184 Identities=10% Similarity=0.102 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhccccCCCcc----ceeeeeeHHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCC
Q 006513 405 RMIVETMMKSSNVLSTLISDV-MDNSPKDSGRFP----LEIRSFRLHAMIKEAACLARCLSIYR---GFGFSIEVDRSLP 476 (642)
Q Consensus 405 ~~~l~~i~~~~~~l~~li~~l-l~~sr~e~~~~~----l~~~~~~L~~li~~~~~~~~~~~~~~---~i~~~~~~~~~lp 476 (642)
+.+++....+=-.+.-++++= +-++ ...+.-+ .-...+++.++|+++.+..+..|..+ .-++.++-...+.
T Consensus 174 qyFLdr~y~sRIsiRMLv~qh~~l~~-~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~ 252 (414)
T KOG0787|consen 174 QYFLDRFYMSRISIRMLVNQHLLLFA-SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALS 252 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheec-CCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCccccc
Confidence 556666655433344455543 3333 1111111 11246889999999999999888754 2233333333322
Q ss_pred CeEEecHHHHHHHHHHHHHHhhcc----cCCCCE----EEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCC
Q 006513 477 DHVMGDERRVFQVILHMVGSLLNC----NSRRGT----VLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEV 548 (642)
Q Consensus 477 ~~v~~D~~~l~qvl~NLl~NAik~----~~~~g~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~ 548 (642)
.. ..-+..|..++..|+.||.++ +...+. |.|.+...++. +.|.|+|.|-
T Consensus 253 ~~-vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeD---------------------l~ikISDrGG 310 (414)
T KOG0787|consen 253 FT-VYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDED---------------------LLIKISDRGG 310 (414)
T ss_pred Cc-cccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc---------------------eEEEEecCCC
Confidence 11 134778999999999999874 333444 77777654433 7888999999
Q ss_pred CCCcchhhhhccccccccC---------CCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEeec
Q 006513 549 GSQPEVSTSVAQLGIRRIV---------NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQL 612 (642)
Q Consensus 549 Gi~~e~~~~if~~f~~~~~---------~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~ 612 (642)
||+.++.+++|.-.|++.. ..-.|.|.||.|||...+-.||++.+.|- +|-||-..+.|....
T Consensus 311 GV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~Sl-eG~GTD~yI~Lk~ls 382 (414)
T KOG0787|consen 311 GVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSL-EGIGTDVYIYLKALS 382 (414)
T ss_pred CcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEee-eccccceEEEeccCC
Confidence 9999999999986665332 12358999999999999999999999999 799999999877543
No 81
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=98.56 E-value=2.9e-06 Score=90.40 Aligned_cols=155 Identities=14% Similarity=0.185 Sum_probs=122.9
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcCCe
Q 006513 172 VRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGV 251 (642)
Q Consensus 172 l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 251 (642)
|+.+-+...+..++.+-|..++.+++..+..+.|.||+.+.++..+.+-++-+-.........+..+++.++.+.++.++
T Consensus 5 Lr~i~E~va~~~~~qe~Ld~iVr~i~~aM~tEVCSvYl~~~d~~~leL~ATeGLnk~av~~~~l~~~eGLVG~v~~~aeP 84 (756)
T COG3605 5 LRRIVEKVASALELQEALDIIVRDIALAMVTEVCSVYLLRADRRVLELMATEGLNKPAVHLVQLAFGEGLVGLVGRSAEP 84 (756)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhhhhheeEEEEcCCCcEEEEEeccccCccccceEEecCCCchhhhhhhccCC
Confidence 66777778889999999999999999999999999999999987666555444333322334566778999999999998
Q ss_pred eEeCCCcchhhcc-CCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHHHH
Q 006513 252 NILGPDSELAAAS-SGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVL 330 (642)
Q Consensus 252 ~~l~~~~~~~~~~-~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~qva 330 (642)
.-+.+.+..+.+. -.+..+....+.+.+|+++..+. +|||++.++..|.|.++|.+++.++|.|+|
T Consensus 85 lNLsdAqsHPsF~Y~petgEE~Y~sFLGvPIi~~~r~-------------lGVLVVQqk~~R~y~E~Eve~L~T~A~~lA 151 (756)
T COG3605 85 LNLADAQSHPSFKYLPETGEERYHSFLGVPIIRRGRL-------------LGVLVVQQRELRQYDEDEVEFLVTLAMQLA 151 (756)
T ss_pred CChhhhhhCCccccccccchHHHHHhhccceeecCce-------------eEEEEEecccccccchHHHHHHHHHHHHHH
Confidence 8876655443322 12233445677888888877665 889999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 006513 331 VALSHAAVL 339 (642)
Q Consensus 331 ~al~~a~l~ 339 (642)
..+.++++.
T Consensus 152 ~iva~~el~ 160 (756)
T COG3605 152 EIVAQSQLT 160 (756)
T ss_pred HHHHhhhhh
Confidence 999998776
No 82
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.49 E-value=5.5e-07 Score=69.74 Aligned_cols=64 Identities=31% Similarity=0.576 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 006513 370 RNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDS 433 (642)
Q Consensus 370 ~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~ 433 (642)
++++.+.++||+||||++|.++++.+.+...+++..++++.+.+.++++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3568899999999999999999999887556666688999999999999999999999987653
No 83
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.46 E-value=1.2e-06 Score=90.89 Aligned_cols=134 Identities=12% Similarity=0.104 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhhcccCCCC---EEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhc
Q 006513 483 ERRVFQVILHMVGSLLNCNSRRG---TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVA 559 (642)
Q Consensus 483 ~~~l~qvl~NLl~NAik~~~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if 559 (642)
...|.|++..|++|+++++...| .|.|.+...+ ..+.++.|.|||||||++.++++|
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~--------------------~d~y~v~veDNGpGIP~e~IPkvF 93 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIG--------------------KDHYKVIVEDNGPGIPEEQIPKVF 93 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecC--------------------CceEEEEEecCCCCCChhHhHHHH
Confidence 46799999999999999766555 4666666552 345999999999999999999999
Q ss_pred cccccccC-----CCCCCccchHHHHHHHHHHcCCE-EEEEecCCCCceEEEEEEEeecCCCCCCCCCCCCCCCCCccCC
Q 006513 560 QLGIRRIV-----NEGIEDRMSFSVCKKLVQLMQGN-IWMVPSSHGFAQSMGLVLRFQLRPSXXXXXXXLLYPYLNLENL 633 (642)
Q Consensus 560 ~~f~~~~~-----~~~~G~GLGL~i~k~iv~~~gG~-I~v~s~~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~l 633 (642)
.++.-+.. .+.+-.|+|.+-|=-..++.-|+ +.|.|...+.++...+.|-.......+.--. ....++-.++
T Consensus 94 Gk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~--r~~~~~~~~~ 171 (538)
T COG1389 94 GKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVE--RGEVENPGGW 171 (538)
T ss_pred HHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhh--cccccCCCCC
Confidence 76432111 22345799999998888988886 7888875455888888887776544332211 1223444556
Q ss_pred CCCcc
Q 006513 634 RSTHI 638 (642)
Q Consensus 634 ~~~~i 638 (642)
.|+||
T Consensus 172 hGT~V 176 (538)
T COG1389 172 HGTRV 176 (538)
T ss_pred CceEE
Confidence 77765
No 84
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.23 E-value=1e-05 Score=72.24 Aligned_cols=93 Identities=12% Similarity=0.073 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhhcccCCC---CEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhc
Q 006513 483 ERRVFQVILHMVGSLLNCNSRR---GTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVA 559 (642)
Q Consensus 483 ~~~l~qvl~NLl~NAik~~~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if 559 (642)
...+.-++..++.||++|...+ +.|.|++...++. +.+.|.|+|+|+++.......
T Consensus 29 ~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~---------------------l~i~v~D~G~~~d~~~~~~~~ 87 (125)
T PF13581_consen 29 RDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDR---------------------LRISVRDNGPGFDPEQLPQPD 87 (125)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCE---------------------EEEEEEECCCCCChhhccCcc
Confidence 4578889999999999986543 5777777666554 999999999998887654332
Q ss_pred cccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEE
Q 006513 560 QLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 560 ~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
..- .......|+||.++++++... .+ +. ++|++++++
T Consensus 88 ~~~----~~~~~~~G~Gl~li~~l~D~~----~~-~~--~~gn~v~l~ 124 (125)
T PF13581_consen 88 PWE----PDSLREGGRGLFLIRSLMDEV----DY-RE--DGGNTVTLR 124 (125)
T ss_pred ccc----CCCCCCCCcCHHHHHHHHcEE----EE-EC--CCeEEEEEE
Confidence 111 023457899999999999876 44 33 568988875
No 85
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.18 E-value=7.1e-05 Score=79.42 Aligned_cols=178 Identities=18% Similarity=0.143 Sum_probs=130.3
Q ss_pred hhHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhc
Q 006513 169 GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGS 248 (642)
Q Consensus 169 ~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 248 (642)
.+.+++++..+....+.+..+..+.+.+...++++.+++..++.++-....+..+................+...+++.+
T Consensus 33 ~~~l~el~~~l~~~~~~e~ll~~v~~~l~~~~~~~~~~ll~~d~~~l~~~~~~gl~~~~~~~~~~~~~~~~~~l~~i~~~ 112 (550)
T COG3604 33 IRILVELTNALLSPLRLERLLAEVAKELHSLFGCDASALLRLDSKNLIPLATDGLSKDHLGREQRFVVEGHPLLEQILKA 112 (550)
T ss_pred hHHHHHhhhhhcCchhHHHHHHHHHHHHHHHhcCCeeEEEEecccccchhhhhcccccccccccccccCcchHHHHHHhC
Confidence 44688888888888999999999999999999999999999887762222222222221111112344457889999999
Q ss_pred CCeeEe-CCCcchhhccCCCc---ccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHH
Q 006513 249 DGVNIL-GPDSELAAASSGES---VESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKV 324 (642)
Q Consensus 249 ~~~~~l-~~~~~~~~~~~~~~---~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~ 324 (642)
+.+.++ ..++.+..+..... ...+..+.+.+|+...++. +|+|.+....+..|+.+-.+.++.
T Consensus 113 ~~p~~~~~~d~~~~~~~~~l~~~~~~~~~~a~i~~PL~~~~~~-------------~G~Ltld~~~~~~f~~~~~~~lr~ 179 (550)
T COG3604 113 GRPLVFHPADSLFPDPYDGLLPDTEGNKKHACIGVPLKSGDKL-------------IGALTLDHTEPDQFDEDLDEELRF 179 (550)
T ss_pred CCcEEEecCCcccCCcccccccCccCCcceeEEeeeeeeCCee-------------eeeEEeeeecccccchhHHHHHHH
Confidence 999998 66665554433222 1224689999998866665 678888877788888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 325 VADQVLVALSHAAVLEESQHMREKLEEQNRALQQA 359 (642)
Q Consensus 325 ~a~qva~al~~a~l~~e~~~~~~~l~~~~~~L~~a 359 (642)
++..++.+..++.+.++....++++++.+.+++..
T Consensus 180 La~~a~la~~~~~l~~~l~~~~~~l~~e~~~~~~~ 214 (550)
T COG3604 180 LAALAALAVANALLHRELSSLKERLEEENLALEEQ 214 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999888888877766655543
No 86
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.08 E-value=1.8e-05 Score=60.59 Aligned_cols=62 Identities=27% Similarity=0.450 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006513 369 ARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMDNSP 430 (642)
Q Consensus 369 ~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr 430 (642)
.+.++.+.++||+|||++++.++++.+.+.. .+++...+++.+.+.++++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3566889999999999999999999987643 3566678999999999999999999998764
No 87
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=98.07 E-value=6.4e-06 Score=76.30 Aligned_cols=159 Identities=17% Similarity=0.229 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCC-eeE-EEEEecC---CCCCCCCCccccCChhHHH
Q 006513 170 VHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKT-EMN-LTHQLNG---RNYSDMCSSIPITDQDVVR 244 (642)
Q Consensus 170 ~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~-~l~-~~~~~~~---~~~~~~~~~i~~~~~~~~~ 244 (642)
..+.++++.+....+.+++++.+++.+.+.++++++.+|..+.+.. ... +.+.... ..........+........
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T COG2203 4 ALLNELAAKIAQDLDLEEILQAALELLAELLGADRGLIYLLDEDGLLDGALVAEAAEAGLEQLIDELFGLVILPACLIGI 83 (175)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccHHhhheeccccccchHHHHHHhcchhhhhHHHHhcccCcchhhhhh
Confidence 4467788889999999999999999999999999999998887752 110 0000000 0000000000111123344
Q ss_pred HHhcCCeeEeCCCcchhhccCCCcc-cCC-ceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCcc-CCchhHHHH
Q 006513 245 IKGSDGVNILGPDSELAAASSGESV-ESG-PVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFR-TWSNQELEI 321 (642)
Q Consensus 245 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~-~~~~~e~~l 321 (642)
+...+.+.++.+............. ..+ ..+.+++|+...++. +|++++...... .|+++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~vPl~~~~~~-------------~G~l~~~~~~~~~~~~~~e~~l 150 (175)
T COG2203 84 ALREGRPVVVEDILQDPRFRDNPLVLLEPPIRSYLGVPLIAQGEL-------------LGLLCVHDSEPRRQWSEEELEL 150 (175)
T ss_pred hhcCCceEEeeccccCcccccCHHHHHHHHHHHheeeeeeECCEe-------------eEEeeeeccCCCCCCCHHHHHH
Confidence 5555555665443322222111111 112 578899998866654 678888887666 699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006513 322 VKVVADQVLVALSHAAVLEE 341 (642)
Q Consensus 322 l~~~a~qva~al~~a~l~~e 341 (642)
++.+|.+++.++++++++++
T Consensus 151 l~~la~~~a~ai~~~~~~~~ 170 (175)
T COG2203 151 LEELAEQVAIAIERARLYEE 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988766
No 88
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=5.3e-05 Score=78.97 Aligned_cols=95 Identities=8% Similarity=0.004 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccc
Q 006513 484 RRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGI 563 (642)
Q Consensus 484 ~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~ 563 (642)
..+.+++.||++||+++. ...|.|.+...+ ...++|.|+|.||++++++++|++|+
T Consensus 21 ~~~~~~l~eLi~Na~dA~--a~~I~i~~~~~~----------------------~~~i~V~DnG~Gi~~~~l~~~~~~~~ 76 (312)
T TIGR00585 21 ERPASVVKELVENSLDAG--ATRIDVEIEEGG----------------------LKLIEVSDNGSGIDKEDLPLACERHA 76 (312)
T ss_pred hhHHHHHHHHHHHHHHCC--CCEEEEEEEeCC----------------------EEEEEEEecCCCCCHHHHHHHhhCCC
Confidence 457899999999999953 356777765321 15699999999999999999999998
Q ss_pred cccCCC---------CCCccchHHHHHHHHHHcCCEEEEEecC-CCCceEEEEE
Q 006513 564 RRIVNE---------GIEDRMSFSVCKKLVQLMQGNIWMVPSS-HGFAQSMGLV 607 (642)
Q Consensus 564 ~~~~~~---------~~G~GLGL~i~k~iv~~~gG~I~v~s~~-~g~Gt~f~i~ 607 (642)
+++... .+-.|.||+-...+ +++.+.+.. .+.+..+.+.
T Consensus 77 tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 77 TSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred cCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEEE
Confidence 755421 12346676543322 367888762 1444444443
No 89
>PRK13558 bacterio-opsin activator; Provisional
Probab=97.87 E-value=0.00084 Score=77.79 Aligned_cols=148 Identities=10% Similarity=0.050 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCcccc-CChhHHHHHhc-
Q 006513 171 HVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPI-TDQDVVRIKGS- 248 (642)
Q Consensus 171 ~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~- 248 (642)
.+..+++.+....+.+++.+.+.+.+.+..+.+.++|+.++++...+......+.... .....+.. ..........+
T Consensus 289 ll~~v~~~l~~~~~~~~l~~~v~~~l~~~~~~~~awi~~~d~~~~~l~~~~~~g~~~~-~~~~~~~~~~~~p~~~a~~~~ 367 (665)
T PRK13558 289 LVNDVTSALVRATDREEIEAAVCDRVGAGGEYDGAWIGEYDPTSGTITVAEAAGGCDG-ADGDVLDLAAAGPAAAALQSV 367 (665)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhccCcceEEEeeecCCCCeEeeeecccCCcc-cccccccccccCchHHHHHhc
Confidence 4567778888889999999999999999999999999998887776654433222111 01111111 11123334444
Q ss_pred -CCeeEeCCCcchhhccCCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHH
Q 006513 249 -DGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVAD 327 (642)
Q Consensus 249 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~ 327 (642)
+....+.......... .....+++++|+.+.++. +|+|.+....++.|+++++++++.+|.
T Consensus 368 ~~~~~~~~~~~~~~~~~-----~~~~~s~~~vPL~~~g~~-------------~GvL~v~~~~~~~f~~~e~~ll~~la~ 429 (665)
T PRK13558 368 VAETEAVESTDVDGVSG-----TVDGSAVAAVPLVYRETT-------------YGVLVVYTAEPDEIDDRERVVLEALGR 429 (665)
T ss_pred cCceEEecCCCcccccc-----ccCCceEEEEeEEECCEE-------------EEEEEEeeCCCCCCCHHHHHHHHHHHH
Confidence 4444443221111000 111128999999877766 668888888899999999999999999
Q ss_pred HHHHHHHHHH
Q 006513 328 QVLVALSHAA 337 (642)
Q Consensus 328 qva~al~~a~ 337 (642)
+++.+|++.+
T Consensus 430 ~ia~aI~~~~ 439 (665)
T PRK13558 430 AVGAAINALE 439 (665)
T ss_pred HHHHHHHHHH
Confidence 9999996544
No 90
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.55 E-value=0.0012 Score=60.33 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=62.5
Q ss_pred ecHHHHHHHHHHHHHHhhcccCC----CCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhh
Q 006513 481 GDERRVFQVILHMVGSLLNCNSR----RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVST 556 (642)
Q Consensus 481 ~D~~~l~qvl~NLl~NAik~~~~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~ 556 (642)
-|-.++.-++..++.|+++|.-. .|.|.|.+...++. +++.|.|.|+|+. ..+
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~---------------------~~i~i~D~G~~~~--~~~ 92 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGK---------------------LEIRIWDQGPGIE--DLE 92 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCe---------------------EEEEEEeCCCCCC--CHH
Confidence 45677888899999999987432 48899999887665 9999999998754 344
Q ss_pred hhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEec
Q 006513 557 SVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPS 596 (642)
Q Consensus 557 ~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~ 596 (642)
..+.+.+.... ....-|+||.++++++ .++.+++.
T Consensus 93 ~~~~~~~~~~~-~~~~~G~Gl~l~~~~~----D~~~~~~~ 127 (146)
T COG2172 93 ESLGPGDTTAE-GLQEGGLGLFLAKRLM----DEFSYERS 127 (146)
T ss_pred HhcCCCCCCCc-ccccccccHHHHhhhh----eeEEEEec
Confidence 45555433222 2234589999998876 45678865
No 91
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=97.08 E-value=0.00032 Score=63.74 Aligned_cols=97 Identities=8% Similarity=0.089 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhcccCCCCEEEEEEEEec-CCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccc
Q 006513 487 FQVILHMVGSLLNCNSRRGTVLFRVVSEN-GSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRR 565 (642)
Q Consensus 487 ~qvl~NLl~NAik~~~~~g~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~ 565 (642)
.+++..||.||+.+. ...|.|.+...+ +. -.|.|.|||.||+++++.+.|......
T Consensus 4 ~~al~ElI~Ns~DA~--a~~I~I~i~~~~~~~---------------------~~i~I~DnG~Gm~~~~l~~~~~~g~s~ 60 (137)
T PF13589_consen 4 EDALRELIDNSIDAG--ATNIKISIDEDKKGE---------------------RYIVIEDNGEGMSREDLESFFRIGRSS 60 (137)
T ss_dssp THHHHHHHHHHHHHH--HHHEEEEEEEETTTT---------------------TEEEEEESSS---HHHHHHHTTCHHTH
T ss_pred HHHHHHHHHHHHHcc--CCEEEEEEEcCCCCC---------------------cEEEEEECCcCCCHHHHHHhccccCCC
Confidence 468889999999853 334777776653 22 568999999999999999987655432
Q ss_pred cC-----CCCCCccch--HHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEee
Q 006513 566 IV-----NEGIEDRMS--FSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQ 611 (642)
Q Consensus 566 ~~-----~~~~G~GLG--L~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~ 611 (642)
.. ...+..|+| +++. .++.++.+.|...+....+++..+.-
T Consensus 61 k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~~~ 108 (137)
T PF13589_consen 61 KKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYDWI 108 (137)
T ss_dssp HHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEEEE
T ss_pred CCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEecc
Confidence 22 122345666 3333 46788999998666666777777654
No 92
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.97 E-value=0.0038 Score=71.08 Aligned_cols=84 Identities=10% Similarity=0.075 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhcccccc
Q 006513 485 RVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIR 564 (642)
Q Consensus 485 ~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~ 564 (642)
+...|+.+|++||+++ +...|.|.+... +. ..++|.|||.||++++++.+|.++.+
T Consensus 22 ~~~svvkElveNsiDA--gat~I~v~i~~~-g~---------------------~~i~V~DnG~Gi~~~~~~~~~~~~~t 77 (617)
T PRK00095 22 RPASVVKELVENALDA--GATRIDIEIEEG-GL---------------------KLIRVRDNGCGISKEDLALALARHAT 77 (617)
T ss_pred CHHHHHHHHHHHHHhC--CCCEEEEEEEeC-Ce---------------------EEEEEEEcCCCCCHHHHHHHhhccCC
Confidence 4678999999999994 367788887432 22 67999999999999999999988765
Q ss_pred ccCCC--------CCC-ccchHHHHHHHHHHcCCEEEEEecC
Q 006513 565 RIVNE--------GIE-DRMSFSVCKKLVQLMQGNIWMVPSS 597 (642)
Q Consensus 565 ~~~~~--------~~G-~GLGL~i~k~iv~~~gG~I~v~s~~ 597 (642)
++-.. .-| -|.||+-.-.+ +++.+.+..
T Consensus 78 sKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 78 SKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred CCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 43211 112 35566543332 477888763
No 93
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.13 Score=46.76 Aligned_cols=192 Identities=11% Similarity=0.036 Sum_probs=111.6
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHHH
Q 006513 373 FQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEA 452 (642)
Q Consensus 373 ~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~~ 452 (642)
+.+.+.||+-.|..+|..-+++|.+...+++ .++-|..++...+. .|.|+|+.-|..----..+|-.+.=+-
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~addD---Am~LIrsSArnas~----rLqFaR~AFGAsgSag~~iDtgeaek~- 89 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGADDD---AMDLIRSSARNASV----RLQFARLAFGASGSAGASIDTGEAEKA- 89 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCccHH---HHHHHHHHhhhHHH----HHHHHHHHhcccccccccccchhHHHH-
Confidence 5678999999999999999999987665544 35556666665543 466777654432222233444333222
Q ss_pred HHHHHHHHhhcCCeEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccC
Q 006513 453 ACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSS 532 (642)
Q Consensus 453 ~~~~~~~~~~~~i~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 532 (642)
.+..+....-+++.+.+.. .....+. ..+.||+.=|.-.-|.||.+.+++......
T Consensus 90 ---A~~~~a~ekpe~~W~g~r~-----~~~Kn~v-kllLNl~lia~~aiPrGG~~~vtle~~e~d--------------- 145 (214)
T COG5385 90 ---AQDFFANEKPELTWNGPRA-----ILPKNRV-KLLLNLFLIAYGAIPRGGSLVVTLENPETD--------------- 145 (214)
T ss_pred ---HHHHHhccCCcccccCChh-----hcCcchH-HHHHHHHHHHcccCCCCCeeEEEeecCCcC---------------
Confidence 2222333334555444322 2223333 457788877777789999999888654332
Q ss_pred CCCceEEEEEEEECCCCC--CcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEE
Q 006513 533 VDGDVHIRFEILLNEVGS--QPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLV 607 (642)
Q Consensus 533 ~~~~~~v~i~V~D~G~Gi--~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~ 607 (642)
-+|+|.-.|+-+ ||+.++-.-..- ....-.+.-.-=+..--+++.-|++|.++.. +.-..|+-.
T Consensus 146 ------~rfsi~akG~m~Rvppk~lel~~G~~---~eE~vdahsVQpyYt~lLa~eAgm~I~v~~~--~e~iv~~A~ 211 (214)
T COG5385 146 ------ARFSIIAKGRMMRVPPKFLELHSGEP---PEEAVDAHSVQPYYTLLLAEEAGMTISVHAT--AERIVFTAW 211 (214)
T ss_pred ------ceEEEEecCccccCCHHHHhhhcCCC---ccccCCCccccHHHHHHHHHHcCCeEEEEec--cceEEEEEe
Confidence 567777777653 555443221100 0000112223345556678999999999987 344555544
No 94
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=96.89 E-value=0.12 Score=48.93 Aligned_cols=153 Identities=13% Similarity=0.163 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEc-------CCCCeeEEEEEecCCCC
Q 006513 156 GREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPN-------EIKTEMNLTHQLNGRNY 228 (642)
Q Consensus 156 ~~e~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~-------~~~~~l~~~~~~~~~~~ 228 (642)
.+++..+.+..+-++.+-.-+..|-+..++++....++.+++.+++.+...++... .+...+.+...-+.-.
T Consensus 8 Yrdi~~Ie~~R~GLe~Ii~as~~L~~~~sl~~fa~gvL~Ql~~Ll~~~~~~l~~~~~~~~~~~~~~~~~~VlaatG~f~- 86 (174)
T PF11849_consen 8 YRDIRTIERNRQGLEKIIEASASLFQIRSLQEFASGVLTQLSALLGLEDDGLYCSVRSAFPDDSDDNEFRVLAATGRFE- 86 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCCCeEEEecccccCCCCCCCCEEEEEEeccch-
Confidence 45555566666677778888888999999999999999999999999888877711 1112233322222111
Q ss_pred CCCCCcc-ccCChh----HHHHHhcCCeeEeCCCcchhhccCCCcccCCceeEEEecceeccccCCCcchhhccceeeEE
Q 006513 229 SDMCSSI-PITDQD----VVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILV 303 (642)
Q Consensus 229 ~~~~~~i-~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igv 303 (642)
...+..+ ...++. +.++..+++... .+....+++|--.+ .-++
T Consensus 87 ~~~~~~~~~~~~~~i~~~~~~a~~~~~~~~-----------------~~~~~~ly~~~~~g---------------~~~~ 134 (174)
T PF11849_consen 87 SLIGQPLDDLLPPEIRAALQQALSSKRSIF-----------------EEDHFVLYFPSSSG---------------RESL 134 (174)
T ss_pred hhcCCcccccCCHHHHHHHHHHHHcCCeEe-----------------cCCeEEEEEecCCC---------------CEEE
Confidence 0011111 112222 334444433222 11223444442211 1335
Q ss_pred EEeeCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 304 LVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQ 343 (642)
Q Consensus 304 l~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~ 343 (642)
+++... +.+++.+.++++.++..++++++|..++++++
T Consensus 135 iyl~~~--~~l~~~d~~LlevF~~Nvs~afdNv~L~~~l~ 172 (174)
T PF11849_consen 135 IYLEGD--RPLSETDRQLLEVFCNNVSIAFDNVSLNEELE 172 (174)
T ss_pred EEEeCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554 68999999999999999999999999988754
No 95
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=96.61 E-value=0.18 Score=47.90 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHHHHHHHHHHHhhcCC
Q 006513 386 HSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLARCLSIYRGF 465 (642)
Q Consensus 386 ~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i 465 (642)
.+|.+.+++|.++..++ .++.++-|.+++.....-+ .|.|+--|...- -..++..++-+ .++..+....+
T Consensus 2 GAI~NGLELL~~~~~~~-~~~~~~LI~~Sa~~A~aRl----~F~RlAFGaag~-~~~i~~~e~~~----~~~~~~~~~r~ 71 (182)
T PF10090_consen 2 GAINNGLELLDDEGDPE-MRPAMELIRESARNASARL----RFFRLAFGAAGS-GQQIDLGEARS----VLRGYFAGGRI 71 (182)
T ss_pred cchhhhHHHHcCCCCcc-chHHHHHHHHHHHHHHHHH----HHHHHHcCCCCC-CCCCCHHHHHH----HHHHHHhCCce
Confidence 46778889887655433 3337788888888776553 444544333322 24566655433 33334444556
Q ss_pred eEEEEeCCCCCCeEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEE
Q 006513 466 GFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILL 545 (642)
Q Consensus 466 ~~~~~~~~~lp~~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D 545 (642)
++..+++.+. . +...-+++.|++-=+....|.||.|+|.+....+. ..+.|.-
T Consensus 72 ~l~W~~~~~~-----~-~k~~vklllnl~l~a~~alprGG~i~V~~~~~~~~---------------------~~~~v~a 124 (182)
T PF10090_consen 72 TLDWQVERDL-----L-PKPEVKLLLNLLLCAEDALPRGGEITVSIEGSEGD---------------------GGWRVRA 124 (182)
T ss_pred EEEccCcccc-----C-CHHHHHHHHHHHHHHHhhcCCCCEEEEEEeccCCC---------------------ceEEEEE
Confidence 6665554431 1 23344889999998888889999999997666544 5677777
Q ss_pred CCCCC--CcchhhhhccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEec
Q 006513 546 NEVGS--QPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPS 596 (642)
Q Consensus 546 ~G~Gi--~~e~~~~if~~f~~~~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~ 596 (642)
+|+.+ +++...-+-..-. ...-.....=.+....+++..|++|.++..
T Consensus 125 ~G~~~~~~~~~~~~L~g~~~---~~~l~~~~VQ~~~~~~la~~~G~~l~~~~~ 174 (182)
T PF10090_consen 125 EGPRARLDPDLWAALAGEDP---EEDLDPRNVQFYLLPLLAREAGRRLSVEAT 174 (182)
T ss_pred eccccCCCHHHHHHhcCCCC---CCCCCHHhHHHHHHHHHHHHcCCeEEEEec
Confidence 77754 4443333321100 011123334567888999999999999876
No 96
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=96.40 E-value=0.008 Score=51.69 Aligned_cols=82 Identities=10% Similarity=0.081 Sum_probs=50.8
Q ss_pred HHHHHHHhhHhHHHHHHHhcCCC--CchHHHHHHHHHHHHHhhHHHHHHHH-----------cCchhHH--HHHHHHHHH
Q 006513 53 FLIAVAYFSIPVELLYFISCSNV--PFKWVLIQFIAFIVLCGLTHLLNGWT-----------YGPHSFQ--LMLSLTVFK 117 (642)
Q Consensus 53 ~~ia~a~~~i~~~l~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~~~~~~--~~~~~~~~~ 117 (642)
++.+++.+.+.+.+.++++..+. +...+++++++++++...|..+++++ |.+|++. .+.+.++.+
T Consensus 2 ~~e~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ll~Vll~a~~~G~~~gl~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (105)
T PF13493_consen 2 YIETIVLFLLATALSLLLRPFDPFASNIPMIYLLAVLLIALRYGLRPGLFAALLSSLLLNFFFFPPPFYDLTFLVYDPQD 81 (105)
T ss_dssp --HHHHHHHHHHHHHHHSTTSS-----SSHHHHHHHHHHHHHHSS---SHHHHHHHHHHHHTTS-SS----TT-SS-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCccccchhhcChhH
Confidence 34577788888888888876532 23336777777777665333333222 2555541 333788999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006513 118 ILTALVSCATSITLITL 134 (642)
Q Consensus 118 ~~t~~v~~~~ai~l~~l 134 (642)
.+++++++++|++++.+
T Consensus 82 ~~~~~~~l~va~v~g~l 98 (105)
T PF13493_consen 82 WITFAVFLVVALVTGYL 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999998
No 97
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=96.30 E-value=0.2 Score=45.65 Aligned_cols=108 Identities=10% Similarity=0.117 Sum_probs=78.3
Q ss_pred CcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcCCeeEeCCCcc-hhhccCCCcccCCceeEEEec
Q 006513 202 LQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSE-LAAASSGESVESGPVAAIRMP 280 (642)
Q Consensus 202 ~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~P 280 (642)
.+.+.+|+.++ .++.+..-.+ ...-..||.+.+..+...++++..++.+-.. .+.-++ ....+|-|++|
T Consensus 51 ~nW~GFYl~~~--~~LvLgPFqG----~~acv~I~~GkGVCg~A~~~~~t~~V~DV~~~~ghiaC----D~as~SEIVvP 120 (163)
T COG1956 51 VNWVGFYLLEG--DELVLGPFQG----KVACVRIPFGKGVCGTAAATGETVRVDDVHAFPGHIAC----DAASNSEIVVP 120 (163)
T ss_pred CceEEEEEecC--CeEEEecccC----CcceEEeccCcchhHHHHhcCCeEEecccccCCCcccc----ccccCceEEEE
Confidence 66788888873 3444321111 1133578999999999999999999865433 333333 24578899999
Q ss_pred ceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHHHHHH
Q 006513 281 MLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVA 332 (642)
Q Consensus 281 l~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~qva~a 332 (642)
++..++. +||+=+.+..+..|++++...|+.+++.++-.
T Consensus 121 i~~~g~~-------------iGvlDiDS~~~~~Fd~~D~~~Le~~~~~l~~~ 159 (163)
T COG1956 121 IFKDGKL-------------IGVLDIDSPTPGRFDEEDEAGLEKLAALLEKS 159 (163)
T ss_pred EEECCEE-------------EEEEecCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 9866555 88999999999999999999999998877654
No 98
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=96.24 E-value=0.14 Score=50.58 Aligned_cols=162 Identities=11% Similarity=0.084 Sum_probs=89.4
Q ss_pred HHHHHHHhhHHHHHHH----HHHHhhhHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEe
Q 006513 148 LKKKAWDLGREVGIIM----KQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQL 223 (642)
Q Consensus 148 l~~~~~~L~~e~~~~~----~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~ 223 (642)
+|.++++|+++...+. +.+.....+..++.++-++.+.+++.......+.+.|+++.+.+++.+........ .
T Consensus 52 LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~~~v~L~L~~~~~~~~~~---~ 128 (225)
T PF04340_consen 52 LRERNRQLEEQLEELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDVDAVRLRLFDDDAAPGPS---L 128 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--SEEEEEEE-SS---SEE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCeEEEEeeccccccccc---h
Confidence 3444566665555543 44444566888888888999999999999999999999999999988755332110 0
Q ss_pred cCCCCCCCCCccccCChhHHHHH----hcCCeeEeCCCcchhhccCCCcccCCceeEEEecceeccccCCCcchhhccce
Q 006513 224 NGRNYSDMCSSIPITDQDVVRIK----GSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACY 299 (642)
Q Consensus 224 ~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~ 299 (642)
. ..+.........+. ..+++.+......... .-.+.......|...+|+. .+.
T Consensus 129 ~--------~~~~~~~~~~~~~~~~~l~~~~p~~G~~~~~~~~-~lF~~~~~~v~S~AlipL~-~~~------------- 185 (225)
T PF04340_consen 129 T--------DHVWLSRDAFAQVFIDLLGLQQPYCGRLSEEEAA-LLFGDEAAQVGSVALIPLG-SGR------------- 185 (225)
T ss_dssp -------------E-HHHHHHHHCCCHTT---CCCS--HHHHH-HHHHHCHCC-SEEEEEEEE-SSS-------------
T ss_pred h--------hcccccHHHHHHHHHHHhCCCCceeCCCCcchhH-HhcCCCCccccchheeecc-CCC-------------
Confidence 0 00011111111111 1122222111111000 0000012457788888876 222
Q ss_pred eeEEEEeeCCCccCCchh-HHHHHHHHHHHHHHHHHH
Q 006513 300 AILVLVLPNEQFRTWSNQ-ELEIVKVVADQVLVALSH 335 (642)
Q Consensus 300 ~igvl~l~~~~~~~~~~~-e~~ll~~~a~qva~al~~ 335 (642)
.+|+|++.+..+..|+++ ...+|+.+|+.++.++.+
T Consensus 186 ~~G~LalGS~D~~rF~p~mgT~fL~~La~vv~~~L~r 222 (225)
T PF04340_consen 186 PIGLLALGSRDPDRFQPDMGTDFLEQLAEVVSAALER 222 (225)
T ss_dssp EEEEEEEEESSTTCCCSTTTTHHHHHHHHHHHHHGGG
T ss_pred ceEEEEecCCChhhCCCCccHHHHHHHHHHHHHHHhc
Confidence 378999999988888775 568999999999888754
No 99
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.62 E-value=0.025 Score=64.47 Aligned_cols=98 Identities=8% Similarity=0.021 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHHHhhcccCCC--CEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhh--
Q 006513 482 DERRVFQVILHMVGSLLNCNSRR--GTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTS-- 557 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~-- 557 (642)
+...+.+++..+|+||++....| ..|.|.+..+ -.|+|.|||+|||.+..+.
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~d------------------------g~I~V~DnGrGIP~~~~~~~~ 89 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHAD------------------------GSVSVRDNGRGIPVGIHPEEG 89 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEeCC------------------------CcEEEEEcCCCCCcccccccC
Confidence 45678999999999999864433 4566666432 1489999999999998877
Q ss_pred ------hccccccccC-------CCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEE
Q 006513 558 ------VAQLGIRRIV-------NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLR 609 (642)
Q Consensus 558 ------if~~f~~~~~-------~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP 609 (642)
+|...+.+.. ...+-.|.|++.+..+-+ .+.+++. .+ |..+...+-
T Consensus 90 ~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~----~l~V~s~-r~-g~~~~~~f~ 148 (631)
T PRK05559 90 KSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSS----RLEVEVK-RD-GKVYRQRFE 148 (631)
T ss_pred CcchheeeeeccccCccCCccccccCcccccchhhhhhhee----eEEEEEE-eC-CeEEEEEEE
Confidence 6755332111 112226889987765543 3455554 22 444444443
No 100
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=94.95 E-value=0.025 Score=64.43 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhccccccc
Q 006513 486 VFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRR 565 (642)
Q Consensus 486 l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~~ 565 (642)
-.-|+..|++||+++ +...|.|.+ ++++ .-.|.|.|||.||++++++-.+.++.++
T Consensus 24 PaSVVKELVENSlDA--GAt~I~I~v--e~gG--------------------~~~I~V~DNG~Gi~~~Dl~la~~rHaTS 79 (638)
T COG0323 24 PASVVKELVENSLDA--GATRIDIEV--EGGG--------------------LKLIRVRDNGSGIDKEDLPLALLRHATS 79 (638)
T ss_pred HHHHHHHHHhccccc--CCCEEEEEE--ccCC--------------------ccEEEEEECCCCCCHHHHHHHHhhhccc
Confidence 446899999999983 334555555 4333 1349999999999999999999887665
Q ss_pred c
Q 006513 566 I 566 (642)
Q Consensus 566 ~ 566 (642)
+
T Consensus 80 K 80 (638)
T COG0323 80 K 80 (638)
T ss_pred c
Confidence 4
No 101
>PRK10963 hypothetical protein; Provisional
Probab=94.80 E-value=2.6 Score=41.58 Aligned_cols=162 Identities=9% Similarity=0.054 Sum_probs=92.6
Q ss_pred HHHHHHHHhhHHHHHHHHH----HHhhhHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEE
Q 006513 147 MLKKKAWDLGREVGIIMKQ----KEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQ 222 (642)
Q Consensus 147 ~l~~~~~~L~~e~~~~~~~----~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~ 222 (642)
.+|.++.+|+.+...+-.. +.....+..++.++-.+-|.++++.+.. .+.+.|+++.++++++++... .. ..
T Consensus 48 ~LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~-~~~~~f~~~~v~l~L~~~~~~-~~--~~ 123 (223)
T PRK10963 48 RQRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLAAADSLQDMLMRLH-RWARDLGLAGAKIRLFPDRWR-LG--AP 123 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHcCCCceEEEEeccccc-cc--Cc
Confidence 3455566666666554443 3444557778888888899999999985 789999999999988764311 10 00
Q ss_pred ecCCCCCCCCCccccCChhHHH----HHhcCCeeEeCCCcchhhccCCCcccCCceeEEEecceeccccCCCcchhhccc
Q 006513 223 LNGRNYSDMCSSIPITDQDVVR----IKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSAC 298 (642)
Q Consensus 223 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~ 298 (642)
. . .. ......+.... ......+.+-...........+ ......|...+|+.+.+
T Consensus 124 ~---~---~~-~~~~~~~~~~~~~~~~~~~~~~y~G~~~~~e~~~lf~--~~~~v~S~AllpL~~~~------------- 181 (223)
T PRK10963 124 S---D---FT-HLALSRQAFEPLRIQRLGQRQHYLGPLNGPELLLLLP--EAKAVGSVAMSLLGSDG------------- 181 (223)
T ss_pred c---c---hh-hhhccHHHHHHHHHHHhcCCCceeCCCChHHHHHhCC--CCCcCceeEEEeccCCC-------------
Confidence 0 0 00 00001111111 1223333333221111110011 12245678888874321
Q ss_pred eeeEEEEeeCCCccCCchh-HHHHHHHHHHHHHHHHHH
Q 006513 299 YAILVLVLPNEQFRTWSNQ-ELEIVKVVADQVLVALSH 335 (642)
Q Consensus 299 ~~igvl~l~~~~~~~~~~~-e~~ll~~~a~qva~al~~ 335 (642)
.+|+|++.+..+..|+++ ...+|+.+|+.++..+.+
T Consensus 182 -~~GlLalGS~D~~rF~~~mgT~fL~~la~vvs~~L~~ 218 (223)
T PRK10963 182 -DLGVLLFSSRDAQHYQQGQGTQLLQHLALMLPELLER 218 (223)
T ss_pred -ceEEEEEeCCChhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 168999999988888765 578888888888877644
No 102
>PRK14083 HSP90 family protein; Provisional
Probab=94.69 E-value=0.036 Score=62.44 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcccCC--------CCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhc
Q 006513 488 QVILHMVGSLLNCNSR--------RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVA 559 (642)
Q Consensus 488 qvl~NLl~NAik~~~~--------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if 559 (642)
..+.+|+.||.++... .+.|.|.+. +.+. -.+.|.|||+||+.+++.+.|
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~---------------------~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGG---------------------GTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCC---------------------cEEEEEeCCCCCCHHHHHHHH
Confidence 4678999999875321 235666653 2222 568999999999999988775
No 103
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=94.49 E-value=0.032 Score=63.75 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=33.5
Q ss_pred HHHHHHHhhccc--------------CCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchh
Q 006513 490 ILHMVGSLLNCN--------------SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (642)
Q Consensus 490 l~NLl~NAik~~--------------~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (642)
+..||+||.++. ..++.+.|++..+.+. ..+.|.|||+||+.+++
T Consensus 30 lRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~---------------------~~L~I~DnGiGMt~edl 88 (701)
T PTZ00272 30 LRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKEN---------------------KTLTVEDNGIGMTKADL 88 (701)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCC---------------------CEEEEEECCCCCCHHHH
Confidence 667888887641 1234566776654332 56899999999999886
Q ss_pred hhhc
Q 006513 556 TSVA 559 (642)
Q Consensus 556 ~~if 559 (642)
.+-+
T Consensus 89 ~~~L 92 (701)
T PTZ00272 89 VNNL 92 (701)
T ss_pred HHHh
Confidence 5554
No 104
>PRK05218 heat shock protein 90; Provisional
Probab=94.26 E-value=0.12 Score=58.72 Aligned_cols=53 Identities=9% Similarity=-0.057 Sum_probs=32.7
Q ss_pred EEEEEECCCCCCcchhhhhccccccc---------------cCCCCCCccchHHHHHHHHHHcCCEEEEEec
Q 006513 540 RFEILLNEVGSQPEVSTSVAQLGIRR---------------IVNEGIEDRMSFSVCKKLVQLMQGNIWMVPS 596 (642)
Q Consensus 540 ~i~V~D~G~Gi~~e~~~~if~~f~~~---------------~~~~~~G~GLGL~i~k~iv~~~gG~I~v~s~ 596 (642)
.|.|.|||.||+.+++...+....++ ...-.+..|+|++-|-. .+-++.|.|.
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~----va~~v~V~Sr 141 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM----VADKVTVITR 141 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh----ccCEEEEEEc
Confidence 48999999999999988765332211 01112347888864332 3345666665
No 105
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=94.01 E-value=0.11 Score=59.80 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHHHhhcccCC--CCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcch
Q 006513 482 DERRVFQVILHMVGSLLNCNSR--RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV 554 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~ 554 (642)
|+.-+.+++..+|+||++-... ...|.|.+... . .|+|.|||.|||.+.
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~--g----------------------~I~V~DnG~GIp~~~ 77 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDD--G----------------------SVTVEDNGRGIPVDI 77 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEeCC--C----------------------cEEEEEeCCCcCccc
Confidence 4567899999999999983322 35677776532 1 299999999999874
No 106
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=93.07 E-value=0.093 Score=59.67 Aligned_cols=80 Identities=11% Similarity=0.087 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHHHHhhcccC--CCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcch-----
Q 006513 482 DERRVFQVILHMVGSLLNCNS--RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV----- 554 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~----- 554 (642)
+.....+++..+|+||++-.- ....|.|.+..+ -.|+|.|||.|||.+.
T Consensus 27 gs~~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d------------------------~~I~V~DnGrGIp~~~h~~~g 82 (625)
T TIGR01055 27 DTTRPNHLVQEVIDNSVDEALAGFASIIMVILHQD------------------------QSIEVFDNGRGMPVDIHPKEG 82 (625)
T ss_pred CCCCcceeehhhhhcccchhhcCCCCEEEEEEeCC------------------------CeEEEEecCCccCcccccccC
Confidence 333457788889999888322 245666666432 2489999999999988
Q ss_pred ---hhhhcccccccc-------CCCCCCccchHHHHHHHHH
Q 006513 555 ---STSVAQLGIRRI-------VNEGIEDRMSFSVCKKLVQ 585 (642)
Q Consensus 555 ---~~~if~~f~~~~-------~~~~~G~GLGL~i~k~iv~ 585 (642)
.+-+|...+.+. ....+-.|.|++.+..+-+
T Consensus 83 ~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~ 123 (625)
T TIGR01055 83 VSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSK 123 (625)
T ss_pred CcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcC
Confidence 565662221111 1112236889988776655
No 107
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=93.04 E-value=0.35 Score=55.23 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHHHhhcccCC--CCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchh
Q 006513 482 DERRVFQVILHMVGSLLNCNSR--RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (642)
Q Consensus 482 D~~~l~qvl~NLl~NAik~~~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (642)
|+.-+.+++..+++||++-... ...|.|.+... + .|+|.|||.|||.+..
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~-g-----------------------~I~V~DnG~GIp~~~h 85 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTINED-G-----------------------SITVTDNGRGIPVDIH 85 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCC-C-----------------------cEEEEEeCccccCCcc
Confidence 4567899999999999983322 34677776532 1 4899999999998743
No 108
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.74 E-value=4.8 Score=38.60 Aligned_cols=160 Identities=11% Similarity=0.086 Sum_probs=87.1
Q ss_pred HHHHHHhhHHHHHHHHHHHh----hhHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEec
Q 006513 149 KKKAWDLGREVGIIMKQKEA----GVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLN 224 (642)
Q Consensus 149 ~~~~~~L~~e~~~~~~~~~~----~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~ 224 (642)
+.+..+|+++...+...... -..+..++..+.++.+.+++++++.+...+-|+.+.+.+-++..... ... -.+.
T Consensus 51 R~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l~~a~l~L~~~~~~-~~~-~~ls 128 (218)
T COG3159 51 RNRIRELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGLAAASLRLFQDSWV-LGA-LALS 128 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCCceEEEEechhhh-hhh-HHhh
Confidence 44456666666555444333 33477788899999999999999988899999998887766543221 100 0000
Q ss_pred CCCCCCCCCccccCChhHHHHHhcCCeeEeCCCcchhhccCCCcccCCceeEEEecceeccccCCCcchhhccceeeEEE
Q 006513 225 GRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVL 304 (642)
Q Consensus 225 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl 304 (642)
-...++.....+..+.+..-.-..... .-..........|..++||-.+. ..|++
T Consensus 129 ----------~~a~e~~r~~~~g~~~~ylG~l~~~e~-~ll~~~ea~~vgSvAi~~L~~~~--------------~~gll 183 (218)
T COG3159 129 ----------RQAFEQVRIQRLGLRQAYLGPLNGAEP-LLLGLPEAKAVGSVAIVPLGSQA--------------PLGLL 183 (218)
T ss_pred ----------hhhhHHHHHHhcCCCCcccccCCcchh-hhccCCcccccceeEEEEccCCC--------------CceEE
Confidence 000011112222222221111000000 00000111234455566654222 25788
Q ss_pred EeeCCCccCCchh-HHHHHHHHHHHHHHHHHH
Q 006513 305 VLPNEQFRTWSNQ-ELEIVKVVADQVLVALSH 335 (642)
Q Consensus 305 ~l~~~~~~~~~~~-e~~ll~~~a~qva~al~~ 335 (642)
.+.+.+++.|.+. ...++..++..++-++++
T Consensus 184 afgS~D~~hf~~gmGT~fL~~la~vl~~~L~R 215 (218)
T COG3159 184 AFGSRDPRHFQPGMGTLFLRHLALVLARLLER 215 (218)
T ss_pred EecCCCccccCCCcchHHHHHHHHHHHHHHhh
Confidence 8888888888764 568888888877777653
No 109
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.34 Score=53.92 Aligned_cols=47 Identities=9% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHHHHHhhcc----------cC----CCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchh
Q 006513 490 ILHMVGSLLNC----------NS----RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (642)
Q Consensus 490 l~NLl~NAik~----------~~----~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (642)
+..||+||.++ .+ ..+.+.|++..+.+. =.++|.|||+||..+++
T Consensus 32 LRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~---------------------kTLtI~DNGIGMT~~Ev 90 (623)
T COG0326 32 LRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDN---------------------KTLTISDNGIGMTKDEV 90 (623)
T ss_pred HHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccC---------------------CEEEEEeCCCCCCHHHH
Confidence 56788887542 11 223577777766544 46899999999998876
Q ss_pred hh
Q 006513 556 TS 557 (642)
Q Consensus 556 ~~ 557 (642)
..
T Consensus 91 ~~ 92 (623)
T COG0326 91 IE 92 (623)
T ss_pred HH
Confidence 43
No 110
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=91.08 E-value=0.28 Score=55.66 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhcccC--CCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchh
Q 006513 487 FQVILHMVGSLLNCNS--RRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (642)
Q Consensus 487 ~qvl~NLl~NAik~~~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (642)
.+++..|++||++..- ....|.|.+...+ .|+|.|||.|||.+..
T Consensus 3 ~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g------------------------~I~V~DnG~GIp~~~h 49 (594)
T smart00433 3 HHLVDEIVDNAADEALAGYMDTIKVTIDKDN------------------------SISVEDNGRGIPVEIH 49 (594)
T ss_pred eEEEeeehhcccchhccCCCCEEEEEEeCCC------------------------eEEEEEeCCceeCCcc
Confidence 4567788899988532 2456666664321 4899999999997654
No 111
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.90 E-value=0.51 Score=41.99 Aligned_cols=31 Identities=6% Similarity=0.080 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhcccCCCCEEEEEEEEecCC
Q 006513 486 VFQVILHMVGSLLNCNSRRGTVLFRVVSENGS 517 (642)
Q Consensus 486 l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~ 517 (642)
+.-+...|++||+|| ...|+|+|.++.....
T Consensus 64 vgYl~NELiENAVKf-ra~geIvieasl~s~~ 94 (184)
T COG5381 64 VGYLANELIENAVKF-RATGEIVIEASLYSHK 94 (184)
T ss_pred HHHHHHHHHHhhhcc-cCCCcEEEEEEeccce
Confidence 445678899999995 4566899998876544
No 112
>PTZ00130 heat shock protein 90; Provisional
Probab=88.42 E-value=0.59 Score=53.98 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=15.9
Q ss_pred EEEEEECCCCCCcchhhhh
Q 006513 540 RFEILLNEVGSQPEVSTSV 558 (642)
Q Consensus 540 ~i~V~D~G~Gi~~e~~~~i 558 (642)
.++|.|||+||..+++..-
T Consensus 136 tLtI~DnGIGMT~eEl~~n 154 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINN 154 (814)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 5899999999999886543
No 113
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=88.09 E-value=5.7 Score=31.79 Aligned_cols=72 Identities=11% Similarity=0.217 Sum_probs=54.3
Q ss_pred HHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHHHHHHH
Q 006513 377 MSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLA 456 (642)
Q Consensus 377 ~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~~~~~~ 456 (642)
+.|-+||-|..|.+++.+-.....+++.++.+..+.....-+..+-+.|..-. ....+++.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~vh~~L~~~~---------~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALVHEQLYQSE---------DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCCeecHHHHHHHHHHHH
Confidence 57999999999999998877666677778888888777777776655554321 224789999999988766
Q ss_pred H
Q 006513 457 R 457 (642)
Q Consensus 457 ~ 457 (642)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 4
No 114
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=85.35 E-value=0.82 Score=52.93 Aligned_cols=47 Identities=9% Similarity=0.217 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhcccCC--CCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcch
Q 006513 484 RRVFQVILHMVGSLLNCNSR--RGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV 554 (642)
Q Consensus 484 ~~l~qvl~NLl~NAik~~~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~ 554 (642)
.-|.+++..+++||++-.-. ...|.|.+..+ + .|+|.|||.|||.+.
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~d-g-----------------------sIsV~DnGrGIPvd~ 84 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIHAD-G-----------------------SVSVSDNGRGIPTDI 84 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEcCC-C-----------------------eEEEEEcCCcccCCc
Confidence 45899999999999983333 35677776532 1 489999999999873
No 115
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=84.40 E-value=4 Score=31.26 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=34.2
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q 006513 373 FQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTL 421 (642)
Q Consensus 373 ~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~l 421 (642)
.++...||+.|-|..|.|++++ ...++..+|++.+.+..+..+.+
T Consensus 15 ~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s~l 59 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQESEL 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4466789999999999999875 33456678888888887776554
No 116
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=84.28 E-value=0.58 Score=53.01 Aligned_cols=48 Identities=13% Similarity=-0.056 Sum_probs=27.7
Q ss_pred EEEEEECCCCCCcchhh-----------hhcc------ccccccCCCCCCccchHHHHHHHHHHc
Q 006513 540 RFEILLNEVGSQPEVST-----------SVAQ------LGIRRIVNEGIEDRMSFSVCKKLVQLM 587 (642)
Q Consensus 540 ~i~V~D~G~Gi~~e~~~-----------~if~------~f~~~~~~~~~G~GLGL~i~k~iv~~~ 587 (642)
.++|.|||.|||-+... -+|. .|...+.-.++-.|.|.+.|.-+-+.+
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 48999999999986542 1121 221111122334788888776554443
No 117
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=83.70 E-value=25 Score=35.99 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=42.0
Q ss_pred HHHHHHhhHhHHHHHHHhcCCCCchHHHHHHHHHHHHHh-----------hHHHHHHHHc-CchhHHHHHHHHHHHHHHH
Q 006513 54 LIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCG-----------LTHLLNGWTY-GPHSFQLMLSLTVFKILTA 121 (642)
Q Consensus 54 ~ia~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~t~ 121 (642)
+.+++.|++.+.++.++.....++..++.+++.+...+| .+.+..++++ .|++..-.+.....-++.+
T Consensus 3 ~~~~~~~~~~s~~~~l~~~~~~l~~~~~~~~~F~~~ml~~~G~r~~~i~~~~Ll~~v~t~~~~~~~~~~~~~~~l~~~Gg 82 (284)
T PF12805_consen 3 IATLLCFALASLLVGLLFPYPWLLILVLALLTFFFGMLGVYGPRAATIGFATLLVAVYTMAGPSPGPEALEHALLFLAGG 82 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 456666767777777666544444333333332222222 2334445555 3332221113344455556
Q ss_pred HHHHHHHHHHHHHHHH
Q 006513 122 LVSCATSITLITLIPL 137 (642)
Q Consensus 122 ~v~~~~ai~l~~l~~~ 137 (642)
+...+.+++.+.+.|.
T Consensus 83 lwy~~lsl~~~~l~p~ 98 (284)
T PF12805_consen 83 LWYLLLSLLWWPLRPY 98 (284)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6666667777777664
No 118
>TIGR02851 spore_V_T stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See PFAM model pfam04014).
Probab=82.70 E-value=42 Score=31.85 Aligned_cols=124 Identities=10% Similarity=0.068 Sum_probs=74.8
Q ss_pred cchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcCCeeEeCCCcc--h
Q 006513 183 LDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSE--L 260 (642)
Q Consensus 183 ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~--~ 260 (642)
.++.+..+.+.+.+.+.+++ +|.+-|.+ . .++|.-.+.. +..+ . + -.....+++.+++......... .
T Consensus 52 ~~~~~~A~~~aeII~~~t~~---aVaITDr~--~-ILA~~G~g~d-~~~~-~-~-is~~t~~~i~~gk~~~~~~~~~~~i 121 (180)
T TIGR02851 52 GELGDFAKEYAESLYQSLGH---IVLITDRD--T-VIAVAGVSKK-EYLN-K-P-ISDELEDTMEERKTVILSDTKDGPI 121 (180)
T ss_pred cchHHHHHHHHHHHHHHhCC---EEEEECCC--c-EEEEECCChh-hcCC-C-c-cCHHHHHHHHcCCEEEecCCcccee
Confidence 45667778888899999987 45554433 2 2222211111 1111 1 3 3456778888888877764321 1
Q ss_pred hhccCCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCcc--CCchhHHHHHHHHHHHHHHHH
Q 006513 261 AAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFR--TWSNQELEIVKVVADQVLVAL 333 (642)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~--~~~~~e~~ll~~~a~qva~al 333 (642)
... ........+.+.+|+...++. +|.+.+. ...+ .+++.+.++.+.+|.-++..+
T Consensus 122 ~c~---~~~~~~l~s~ii~Pl~~~g~v-------------iGtLkly-~k~~~~~~~~~e~~la~glA~lLS~QL 179 (180)
T TIGR02851 122 EII---DGQEFEYTSQVIAPIIAEGDP-------------IGAVIIF-SKEPGEKLGEVEQKAAETAAAFLGKQM 179 (180)
T ss_pred ccc---cCCCCCcceEEEEEEEECCeE-------------EEEEEEE-ECCccCCCCHHHHHHHHHHHHHHHHhh
Confidence 111 011122578999999876665 6777777 5555 889999999998887766543
No 119
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=81.05 E-value=37 Score=29.57 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=6.3
Q ss_pred HHHHhhHHHHHH
Q 006513 151 KAWDLGREVGII 162 (642)
Q Consensus 151 ~~~~L~~e~~~~ 162 (642)
+..+|-||+...
T Consensus 94 ~i~~L~qeiAl~ 105 (115)
T PF10066_consen 94 KIKRLAQEIALL 105 (115)
T ss_pred HHHHHHHHHHHH
Confidence 345555555554
No 120
>PLN03237 DNA topoisomerase 2; Provisional
Probab=79.55 E-value=2.3 Score=52.34 Aligned_cols=79 Identities=6% Similarity=0.077 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhcc---cCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhh------
Q 006513 486 VFQVILHMVGSLLNC---NSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVST------ 556 (642)
Q Consensus 486 l~qvl~NLl~NAik~---~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~------ 556 (642)
|.+++..+|.||++. .+....|.|.+..+++ .|+|.|||.|||-+..+
T Consensus 78 L~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~g-----------------------sIsV~DnGRGIPV~iH~~eg~~~ 134 (1465)
T PLN03237 78 LYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQN-----------------------LISVYNNGDGVPVEIHQEEGVYV 134 (1465)
T ss_pred hhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCCC-----------------------EEEEEecCccccCCCCCCCCCcc
Confidence 445555555555542 2445677777765543 38999999999976432
Q ss_pred --hhcccccccc-------CCCCCCccchHHHHHHHHHHc
Q 006513 557 --SVAQLGIRRI-------VNEGIEDRMSFSVCKKLVQLM 587 (642)
Q Consensus 557 --~if~~f~~~~-------~~~~~G~GLGL~i~k~iv~~~ 587 (642)
-||.....+. ...++-.|.|.+.|.-+-+.+
T Consensus 135 pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f 174 (1465)
T PLN03237 135 PEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEF 174 (1465)
T ss_pred ceEEEEeeeccccCCCCcceeeccccccCccccccccCee
Confidence 2232222211 112223688888776555444
No 121
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=78.54 E-value=3 Score=46.65 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhcccccc
Q 006513 485 RVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIR 564 (642)
Q Consensus 485 ~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~ 564 (642)
-+.|++..|+-|++++ +...|.|.+..+. ..+.|.|+|.|+..++++.+-+++++
T Consensus 21 sla~~VeElv~NSiDA--~At~V~v~V~~~t-----------------------~sv~ViDdG~G~~rdDl~~lg~ry~T 75 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDA--EATCVAVRVNMET-----------------------FSVQVIDDGFGMGRDDLEKLGNRYFT 75 (1142)
T ss_pred HHHHHHHHHHhhcccc--CceEEEEEecCce-----------------------eEEEEEecCCCccHHHHHHHHhhhhh
Confidence 4789999999999984 4556777765443 78999999999999999988776655
Q ss_pred c
Q 006513 565 R 565 (642)
Q Consensus 565 ~ 565 (642)
.
T Consensus 76 S 76 (1142)
T KOG1977|consen 76 S 76 (1142)
T ss_pred h
Confidence 3
No 122
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=78.45 E-value=1.8 Score=49.37 Aligned_cols=48 Identities=4% Similarity=0.125 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhccc--CCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcch
Q 006513 483 ERRVFQVILHMVGSLLNCN--SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV 554 (642)
Q Consensus 483 ~~~l~qvl~NLl~NAik~~--~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~ 554 (642)
+.-+.+++..+|+||++-. .....|.|.+..+ =.++|.|||.|||.+.
T Consensus 32 ~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~d------------------------gsitV~DnGrGIPv~~ 81 (637)
T TIGR01058 32 SKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKD------------------------NSITVQDDGRGIPTGI 81 (637)
T ss_pred cchhheehhhhhcchhhhhhcCCCcEEEEEEcCC------------------------CeEEEEECCCcccCcc
Confidence 4567788888888888732 2345666666522 2489999999999754
No 123
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=76.47 E-value=2.8 Score=46.96 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhhhcccccc
Q 006513 486 VFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIR 564 (642)
Q Consensus 486 l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~if~~f~~ 564 (642)
+.-++..|++|++++ +...|.|.+...+ .=.|+|+|||.||++.+.+-+-.+.++
T Consensus 21 l~sAVKELvENSiDA--GAT~I~I~~kdyG----------------------~d~IEV~DNG~GI~~~n~~~l~lkh~T 75 (672)
T KOG1978|consen 21 LVSAVKELVENSIDA--GATAIDIKVKDYG----------------------SDSIEVSDNGSGISATDFEGLALKHTT 75 (672)
T ss_pred HHHHHHHHHhcCccc--CCceeeEecCCCC----------------------cceEEEecCCCCCCccchhhhhhhhhh
Confidence 347889999999983 3445666654332 245999999999999887766544443
No 124
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=75.58 E-value=3.5 Score=50.78 Aligned_cols=97 Identities=6% Similarity=0.074 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhccc------CCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhh---
Q 006513 486 VFQVILHMVGSLLNCN------SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVST--- 556 (642)
Q Consensus 486 l~qvl~NLl~NAik~~------~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~--- 556 (642)
|.+++..+|.||++.. +....|.|.+..+.+ .|+|.|||.|||-+..+
T Consensus 58 L~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~g-----------------------~IsV~dnGrGIPv~~h~~~~ 114 (1388)
T PTZ00108 58 LYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEENG-----------------------EISVYNDGEGIPVQIHKEHK 114 (1388)
T ss_pred hhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccCC-----------------------eEEEEecCCcccCCCCCCCC
Confidence 5555555555555521 334567676654432 38999999999976532
Q ss_pred -----hhccccccccC-------CCCCCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEE
Q 006513 557 -----SVAQLGIRRIV-------NEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLR 609 (642)
Q Consensus 557 -----~if~~f~~~~~-------~~~~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP 609 (642)
-+|....++.. ..++-.|.|.+.|.-+-+ .+.|+..-...|-.|..++-
T Consensus 115 ~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~----~f~Vev~r~~~gk~y~q~f~ 175 (1388)
T PTZ00108 115 IYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFST----KFTVECVDSKSGKKFKMTWT 175 (1388)
T ss_pred CccceEEEEEeeccccCCCCceeeecccccCCccccccccc----eEEEEEEECCCCCEEEEEec
Confidence 23332222111 112235888877664443 34444331123556666654
No 125
>PLN03128 DNA topoisomerase 2; Provisional
Probab=75.55 E-value=4.3 Score=49.30 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhcc---cCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchh
Q 006513 486 VFQVILHMVGSLLNC---NSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (642)
Q Consensus 486 l~qvl~NLl~NAik~---~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (642)
|.+++..+|.||++. .+....|.|.+..+++ .|+|.|||.|||-+..
T Consensus 53 L~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dg-----------------------sIsV~DnGrGIPv~ih 102 (1135)
T PLN03128 53 LYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQN-----------------------TISVYNNGKGIPVEIH 102 (1135)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCC-----------------------eEEEEecCccccCCCC
Confidence 555555555555552 2345677777765433 3899999999997643
No 126
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=73.41 E-value=1.7e+02 Score=33.24 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEE
Q 006513 171 HVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWM 209 (642)
Q Consensus 171 ~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l 209 (642)
+...+.+..+.+.|..+-|-.--..+..+.+++.+++|+
T Consensus 329 ~~arl~~~ma~~~~~~d~L~~~~~dll~L~~adGaal~f 367 (750)
T COG4251 329 HHARLLRYMAHAADFVDGLIDHQDDLLDLMPADGAALCF 367 (750)
T ss_pred HHHHHHHHHhhhcchhhhhcCCchhhHhhccCCceEEEE
Confidence 334445555666777776666667888999999888877
No 127
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=73.02 E-value=61 Score=27.93 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006513 118 ILTALVSCATSITLITL 134 (642)
Q Consensus 118 ~~t~~v~~~~ai~l~~l 134 (642)
+++.++||..++...-+
T Consensus 37 lLnl~lS~~Aa~~ap~I 53 (108)
T PF06210_consen 37 LLNLVLSLEAAYQAPLI 53 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56677777776665443
No 128
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=72.95 E-value=4.6 Score=44.35 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEE-EEEEECCCCCCcchhhhhcccccccc
Q 006513 488 QVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIR-FEILLNEVGSQPEVSTSVAQLGIRRI 566 (642)
Q Consensus 488 qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-i~V~D~G~Gi~~e~~~~if~~f~~~~ 566 (642)
-++-.|++|++++ +...|.|.+.. ++ ++ +.|+|||.||..++++-+.++|.+++
T Consensus 30 NAlKEliENSLDA--~ST~I~V~vk~--GG---------------------LKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 30 NALKELIENSLDA--NSTSIDVLVKD--GG---------------------LKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred HHHHHHHhccccC--CCceEEEEEec--CC---------------------eEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 4677888999883 44556666543 22 44 57889999999999999999987654
No 129
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=72.72 E-value=80 Score=32.93 Aligned_cols=93 Identities=15% Similarity=0.250 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q 006513 340 EESQHMREKLEEQNRALQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLS 419 (642)
Q Consensus 340 ~e~~~~~~~l~~~~~~L~~a~~~~~~a~~~~~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~ 419 (642)
+|..+++++.++.++.-..-++.+++..+..+...++++|.-+. |..+...+.-++. ..+++..+.++.+.+...+..
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~-~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKK-SLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHHH
Confidence 44445555444444444445555666677888889999998775 4444444433332 245677788888888888877
Q ss_pred HHHHHHHhhccccCC
Q 006513 420 TLISDVMDNSPKDSG 434 (642)
Q Consensus 420 ~li~~ll~~sr~e~~ 434 (642)
..+.|+-.+.-..+|
T Consensus 82 ~~l~DmEa~LPkkNG 96 (330)
T PF07851_consen 82 CQLFDMEAFLPKKNG 96 (330)
T ss_pred hhHHHHHhhCCCCCC
Confidence 777776554433333
No 130
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=70.57 E-value=1.2e+02 Score=35.46 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=28.6
Q ss_pred HHHHhhhHHHHHHHhhHhHHHHHHHhcCCCCchHHHHHH
Q 006513 46 ETQKVSDFLIAVAYFSIPVELLYFISCSNVPFKWVLIQF 84 (642)
Q Consensus 46 ~~~~~sd~~ia~a~~~i~~~l~~~~~~~~~~~~~~~~~~ 84 (642)
..+++..+++++.+|++...++.++......+..++...
T Consensus 53 ~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~ 91 (701)
T TIGR01667 53 LTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLL 91 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 347789999999999999999998765555444444333
No 131
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=64.44 E-value=49 Score=31.20 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=35.2
Q ss_pred CceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHHHHHHHHHHH
Q 006513 272 GPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAA 337 (642)
Q Consensus 272 ~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~ 337 (642)
..+....+|+.-. +..+|.|.+... ...|+++|+-+.+..|.-|++-+-++.
T Consensus 106 ~~k~~tivPI~g~-------------GeRLGTLvl~r~-~~~F~ddDLILaEY~ATVVGmEiLr~~ 157 (177)
T PF06018_consen 106 PNKYTTIVPIYGG-------------GERLGTLVLARF-DKEFTDDDLILAEYGATVVGMEILRSK 157 (177)
T ss_dssp SSSEEEEEEEEET-------------TEEEEEEEEEES-S----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEEeeC-------------CeEEEEEEEEEc-CCCCChhhhHHHHHHHHHHHHHHHHHH
Confidence 3455677887633 445788877654 568999999999999999999885554
No 132
>PRK11677 hypothetical protein; Provisional
Probab=61.10 E-value=81 Score=28.30 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 006513 120 TALVSCATSITLITLIPLLLK 140 (642)
Q Consensus 120 t~~v~~~~ai~l~~l~~~~l~ 140 (642)
.+++.++++++++.++-++..
T Consensus 5 ~a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 344555555555555555433
No 133
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=60.92 E-value=7.3 Score=43.58 Aligned_cols=50 Identities=10% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhcc--cCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchhhh
Q 006513 484 RRVFQVILHMVGSLLNC--NSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTS 557 (642)
Q Consensus 484 ~~l~qvl~NLl~NAik~--~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~~~ 557 (642)
.-|.+++...++||++- ..-...|.|.+..+ + .++|.|||.|||-+..+.
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d-~-----------------------sisV~DnGRGIPvdiH~~ 86 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGYADRIDVTLHED-G-----------------------SISVEDNGRGIPVDIHPK 86 (635)
T ss_pred CcceeeEeEeeechHhHHhhCcCcEEEEEEcCC-C-----------------------eEEEEECCCCCccccCCC
Confidence 44555555555665552 23456677777532 2 389999999999877433
No 134
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=60.27 E-value=42 Score=25.81 Aligned_cols=14 Identities=21% Similarity=0.231 Sum_probs=6.2
Q ss_pred HHhhHHHHHHHHHH
Q 006513 153 WDLGREVGIIMKQK 166 (642)
Q Consensus 153 ~~L~~e~~~~~~~~ 166 (642)
.+++++++.++++.
T Consensus 51 ~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 51 RRLRKELKKLEKEL 64 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 135
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=58.74 E-value=2.1 Score=49.99 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhccc--CCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchh
Q 006513 484 RRVFQVILHMVGSLLNCN--SRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (642)
Q Consensus 484 ~~l~qvl~NLl~NAik~~--~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (642)
.-|.+++..+|+||++-. .....|.|.+..+ + .++|.|||.|||-+..
T Consensus 128 ~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~D-g-----------------------sItV~DnGRGIPvd~h 177 (903)
T PTZ00109 128 KGLHQLLFEILDNSVDEYLAGECNKITVVLHKD-G-----------------------SVEISDNGRGIPCDVS 177 (903)
T ss_pred CcceEEEEEEeeccchhhccCCCcEEEEEEcCC-C-----------------------eEEEEeCCcccccccc
Confidence 446666677777777632 2345666666432 2 3899999999997653
No 136
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=54.74 E-value=2.7e+02 Score=29.69 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 006513 371 NAFQKVMSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMK 413 (642)
Q Consensus 371 ~~~l~~~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~ 413 (642)
.++-..++..+|+-.....+++.-+.+-...++..+.+....+
T Consensus 249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3678888999999777777777777665555555555444433
No 137
>PRK04158 transcriptional repressor CodY; Validated
Probab=51.95 E-value=2.6e+02 Score=28.01 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=37.2
Q ss_pred CCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHHHHHHHHHHH
Q 006513 271 SGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAA 337 (642)
Q Consensus 271 ~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~ 337 (642)
.+.+-...+|+...+ ..+|.+++... ...|+++++-+++.-|.-++..+-+..
T Consensus 107 ~~~~~~tIvPI~ggG-------------eRLGTLvl~r~-~~~f~~dDliL~EyaATVVgLEIlR~~ 159 (256)
T PRK04158 107 FPDKLTTIVPIIGGG-------------ERLGTLILARF-DKEFTDDDLILAEYAATVVGMEILREK 159 (256)
T ss_pred ccCceEEEEEEecCC-------------eEEEEEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444557778876443 34667666543 468999999999999999988885543
No 138
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=51.86 E-value=46 Score=31.90 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=54.5
Q ss_pred hhHHHHHhcCCeeEeCCCcchhhccCCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHH
Q 006513 240 QDVVRIKGSDGVNILGPDSELAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQEL 319 (642)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~ 319 (642)
+.+..++.+.+...+.+....+-.....+...+..+.++-|+-. -|++++-...+|.||..|.
T Consensus 122 ~i~~~~~~~~~~~yL~nl~lyPGr~Ef~~lP~ntq~VlvqP~g~-----------------~G~lvlgs~~~R~ft~~D~ 184 (195)
T PF11152_consen 122 PICQRAMESGKLIYLVNLKLYPGRVEFDYLPENTQSVLVQPLGQ-----------------NGVLVLGSNSPRAFTKSDE 184 (195)
T ss_pred HHHHHHHhcCCceeccccccCCCchhhhhcCCCCcEEEEEEcCC-----------------CeEEEEeeCCccccCHHHH
Confidence 45778888888877766555444333346677888999999652 2688888999999999999
Q ss_pred HHHHHHHHH
Q 006513 320 EIVKVVADQ 328 (642)
Q Consensus 320 ~ll~~~a~q 328 (642)
.-++.+|+.
T Consensus 185 ~Wi~~iA~K 193 (195)
T PF11152_consen 185 AWIAGIADK 193 (195)
T ss_pred HHHHHHHHh
Confidence 999988874
No 139
>COG3835 CdaR Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]
Probab=51.69 E-value=3.1e+02 Score=28.79 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=43.1
Q ss_pred CCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 271 SGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREKLE 350 (642)
Q Consensus 271 ~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~l~ 350 (642)
.|.+..|.+|++..++. +||+.+.... ++-....+.+--.+-..++.+++.|+++.-+...+
T Consensus 69 ~gVkpGINLPi~~~~~v-------------VGViGITGeP-----~~Vr~y~ELVrm~AElliEQ~~~~Eq~qw~~r~rE 130 (376)
T COG3835 69 KGVKPGINLPIRFDGKV-------------VGVIGITGEP-----EEVRKYGELVRMTAELLIEQARLLEQLQWDRRYRE 130 (376)
T ss_pred cCCCCCCCcceEecCce-------------EEEEeccCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999877766 6787775542 11122333333344456777777777766666666
Q ss_pred HHHHHHHHHHH
Q 006513 351 EQNRALQQAQK 361 (642)
Q Consensus 351 ~~~~~L~~a~~ 361 (642)
+-..++-+.+.
T Consensus 131 ~f~~~li~~~~ 141 (376)
T COG3835 131 EFVSDLIQQKE 141 (376)
T ss_pred HHHHHHHhccc
Confidence 55555544433
No 140
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=50.70 E-value=1.1e+02 Score=23.47 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHH
Q 006513 141 VKVREFMLKKKAWDLGREVGIIM 163 (642)
Q Consensus 141 ~~~~e~~l~~~~~~L~~e~~~~~ 163 (642)
++.|...|+...+++.+|.+..+
T Consensus 38 v~qrr~iL~~v~r~~aReaR~~~ 60 (67)
T COG3114 38 VLQRRAILRGVARQRAREARLRA 60 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566655555555554433
No 141
>PRK10263 DNA translocase FtsK; Provisional
Probab=50.61 E-value=6.1e+02 Score=31.84 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhcCCeEEE
Q 006513 448 MIKEAACLARCLSIYRGFGFSI 469 (642)
Q Consensus 448 li~~~~~~~~~~~~~~~i~~~~ 469 (642)
-+++....++..+..-+|+.++
T Consensus 886 ~l~~~a~~l~~~L~~F~i~~~v 907 (1355)
T PRK10263 886 ALEQMARLVEARLADFRIKADV 907 (1355)
T ss_pred HHHHHHHHHHHHHHHCCcceEE
Confidence 3444444555555555555443
No 142
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.54 E-value=1.4e+02 Score=25.48 Aligned_cols=15 Identities=0% Similarity=-0.062 Sum_probs=6.2
Q ss_pred HHhhHHHHHHHHHHH
Q 006513 153 WDLGREVGIIMKQKE 167 (642)
Q Consensus 153 ~~L~~e~~~~~~~~~ 167 (642)
.+++++...++++.+
T Consensus 37 ~~~~~e~~~l~~~n~ 51 (105)
T PRK00888 37 AAQQQTNAKLKARND 51 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 143
>PF14770 TMEM18: Transmembrane protein 18
Probab=49.82 E-value=1.8e+02 Score=25.63 Aligned_cols=40 Identities=23% Similarity=0.511 Sum_probs=24.4
Q ss_pred HHHHHHHhhHhHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Q 006513 53 FLIAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCG 92 (642)
Q Consensus 53 ~~ia~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (642)
++++++.|=+-+.++..+.+++..+...++++....+.|+
T Consensus 16 wl~~L~~fH~~~~~~~~~tr~~~~~q~~lf~~ll~~v~~a 55 (123)
T PF14770_consen 16 WLIGLIAFHVLLLLLAILTRRRYNFQMILFLILLLLVYCA 55 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665556666655555555553
No 144
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=45.21 E-value=1.7e+02 Score=27.41 Aligned_cols=33 Identities=21% Similarity=0.138 Sum_probs=23.5
Q ss_pred HHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHHh
Q 006513 136 PLLLKVKVREFMLKKKAWDLGREVGIIMKQKEA 168 (642)
Q Consensus 136 ~~~l~~~~~e~~l~~~~~~L~~e~~~~~~~~~~ 168 (642)
.....-..+.-.++.|...|+.|++++++|+.+
T Consensus 145 ~g~~gs~~~~~~LE~kv~~LE~qvr~L~~R~~r 177 (177)
T PF14965_consen 145 TGLVGSYWRSASLEAKVRHLERQVRELNIRQRR 177 (177)
T ss_pred ccccCCCCCcccHHHHHHHHHHHHHHHHHHhcC
Confidence 333444445567788899999999998887653
No 145
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=44.44 E-value=1.8e+02 Score=23.86 Aligned_cols=53 Identities=23% Similarity=0.181 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHHh-hhHHHHHHHHH
Q 006513 127 TSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEA-GVHVRMLTQEI 179 (642)
Q Consensus 127 ~ai~l~~l~~~~l~~~~~e~~l~~~~~~L~~e~~~~~~~~~~-~~~l~~lt~~i 179 (642)
.+++...+++-+.+++..-...+.....+++++..+.++-.. ....+.+...+
T Consensus 10 f~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv 63 (90)
T PF06103_consen 10 FAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDV 63 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555444444444456666666554433222 33344444443
No 146
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=44.09 E-value=4.7e+02 Score=29.07 Aligned_cols=11 Identities=0% Similarity=0.235 Sum_probs=5.5
Q ss_pred CCEEEEEEEEe
Q 006513 504 RGTVLFRVVSE 514 (642)
Q Consensus 504 ~g~i~i~~~~~ 514 (642)
++.+.++++.+
T Consensus 439 ~~~i~l~V~Dn 449 (495)
T PRK11644 439 DERLMLVIEDD 449 (495)
T ss_pred CCEEEEEEEEC
Confidence 44555555443
No 147
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=41.99 E-value=4.2e+02 Score=29.87 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=11.3
Q ss_pred hhHHHHHHHhhHhHHHHHHHhcCCCCchHH
Q 006513 51 SDFLIAVAYFSIPVELLYFISCSNVPFKWV 80 (642)
Q Consensus 51 sd~~ia~a~~~i~~~l~~~~~~~~~~~~~~ 80 (642)
-..+|+++.|+.++.=+| .+++.....|+
T Consensus 112 i~~~i~i~a~~~~l~~g~-~sr~~~glqw~ 140 (952)
T TIGR02921 112 INIGIAIAAFAACLFGGV-ASRFKIGLQWL 140 (952)
T ss_pred HHHHHHHHHHHHHHhhcc-hhcccchHHHH
Confidence 334444444443332222 22333444454
No 148
>COG4709 Predicted membrane protein [Function unknown]
Probab=41.98 E-value=3.1e+02 Score=26.05 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=22.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006513 103 GPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVK 142 (642)
Q Consensus 103 ~~~~~~~~~~~~~~~~~t~~v~~~~ai~l~~l~~~~l~~~ 142 (642)
.+.+.+.. .+....+++++-+.++++..+-++-...+..
T Consensus 136 ~~e~~~~i-~~~i~a~f~~IGs~lLgl~~~~~if~iv~~~ 174 (195)
T COG4709 136 GVESLFLI-GSSISAFFIGIGSLLLGLGLGIVIFAIVKYA 174 (195)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344333 5566666777777777776665544444443
No 149
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.41 E-value=2e+02 Score=25.49 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 006513 122 LVSCATSITLITLIPLLLKVK 142 (642)
Q Consensus 122 ~v~~~~ai~l~~l~~~~l~~~ 142 (642)
++.++++++++.++-++..-.
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 344444444454444444333
No 150
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=39.97 E-value=6.8e+02 Score=29.35 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=24.8
Q ss_pred HHHhhhHHHHHHHhhHhHHHHHHHhcCCCCchH
Q 006513 47 TQKVSDFLIAVAYFSIPVELLYFISCSNVPFKW 79 (642)
Q Consensus 47 ~~~~sd~~ia~a~~~i~~~l~~~~~~~~~~~~~ 79 (642)
.+++..+++++.+|++....+.++......|..
T Consensus 54 ~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~ 86 (704)
T TIGR01666 54 TGRLKNVIFTLICFSIASFSVELLFGKPWLFAV 86 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 467889999999999999988886644443433
No 151
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=39.25 E-value=4.2e+02 Score=26.76 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=20.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHhccc
Q 006513 148 LKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLD 184 (642)
Q Consensus 148 l~~~~~~L~~e~~~~~~~~~~~~~l~~lt~~i~~~ld 184 (642)
++..+.+|++|+.+++.+....+.+..=.+++++.++
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 74 LREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344567777776666666555554444444444433
No 152
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=38.61 E-value=1.2e+02 Score=21.62 Aligned_cols=11 Identities=36% Similarity=0.157 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 006513 117 KILTALVSCAT 127 (642)
Q Consensus 117 ~~~t~~v~~~~ 127 (642)
|.+|++++...
T Consensus 11 Yg~t~~~l~~l 21 (46)
T PF04995_consen 11 YGVTALVLAGL 21 (46)
T ss_pred HHHHHHHHHHH
Confidence 56666654443
No 153
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=38.22 E-value=2.3e+02 Score=27.27 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=27.0
Q ss_pred HHHHHhcCCC-CchHHHHHHHHHHHHHhhHHHHHHHHc
Q 006513 66 LLYFISCSNV-PFKWVLIQFIAFIVLCGLTHLLNGWTY 102 (642)
Q Consensus 66 l~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 102 (642)
..||+.+++- ..+.+++-++++++-+.+|.++..|..
T Consensus 128 ~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~ 165 (194)
T PF11833_consen 128 CIYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWLP 165 (194)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3477776643 567788888888887777888877764
No 154
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=36.51 E-value=2.1e+02 Score=22.53 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=10.0
Q ss_pred HHHhhHHHHHHHHHHHhhhH
Q 006513 152 AWDLGREVGIIMKQKEAGVH 171 (642)
Q Consensus 152 ~~~L~~e~~~~~~~~~~~~~ 171 (642)
+.+++++.++.++++.+...
T Consensus 45 aK~ie~~ere~K~k~Kr~~~ 64 (74)
T PF15086_consen 45 AKAIEKEEREKKKKAKRQAN 64 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555554555444443
No 155
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.41 E-value=3.8e+02 Score=27.27 Aligned_cols=84 Identities=13% Similarity=0.208 Sum_probs=47.3
Q ss_pred hhhHHHHHHHhhHhHHHHHHH-----h---cCCCCchHH--HHHHHHHHHHHh----------hHHHHHHHHcCchhHHH
Q 006513 50 VSDFLIAVAYFSIPVELLYFI-----S---CSNVPFKWV--LIQFIAFIVLCG----------LTHLLNGWTYGPHSFQL 109 (642)
Q Consensus 50 ~sd~~ia~a~~~i~~~l~~~~-----~---~~~~~~~~~--~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~ 109 (642)
..||+.|+.||.+=+--.|.. + |.|-.|..+ +|.|..=++.|. ++-+++....+.. .
T Consensus 162 ~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~qAvgf~g~~~~G~i~ai~~~~~--~- 238 (313)
T KOG3088|consen 162 GTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVFQAVGFPGWGLCGWIPAIDVLSG--N- 238 (313)
T ss_pred chhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHccCCcchhhhhhHhhccCc--c-
Confidence 467889999988877766642 2 234444444 433333344442 2223333333221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 110 MLSLTVFKILTALVSCATSITLITLIPL 137 (642)
Q Consensus 110 ~~~~~~~~~~t~~v~~~~ai~l~~l~~~ 137 (642)
...++.+++.|+.+++.++....++-+
T Consensus 239 -i~v~i~m~i~a~~Ft~~av~~i~~i~k 265 (313)
T KOG3088|consen 239 -IAVGILMLIGAGLFTLEAVLSIWVLQK 265 (313)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 145777888888888888777666433
No 156
>COG4420 Predicted membrane protein [Function unknown]
Probab=36.02 E-value=3.9e+02 Score=25.41 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=7.2
Q ss_pred HHcCchhHHHH
Q 006513 100 WTYGPHSFQLM 110 (642)
Q Consensus 100 ~~~~~~~~~~~ 110 (642)
+.|.|+||.++
T Consensus 82 ~~wDpyPFi~L 92 (191)
T COG4420 82 LAWDPYPFILL 92 (191)
T ss_pred CcCCCccHHHH
Confidence 45678777654
No 157
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=35.53 E-value=4.5e+02 Score=26.04 Aligned_cols=54 Identities=24% Similarity=0.236 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHh--hhHHHHHHHHHHhccchhhHHHHHHHHH
Q 006513 143 VREFMLKKKAWDLGREVGIIMKQKEA--GVHVRMLTQEIRKSLDRHTILYTTLVEL 196 (642)
Q Consensus 143 ~~e~~l~~~~~~L~~e~~~~~~~~~~--~~~l~~lt~~i~~~ld~~~il~~~~~~l 196 (642)
..+++-.+-+.++++|++.+..+... .+|...+++-=-.-.|+|..-+-....+
T Consensus 161 ~~~~L~~~LNnrlE~eV~~i~~~~~~~l~rHy~~L~~lrI~lSD~EA~~y~~i~i~ 216 (237)
T PF13748_consen 161 RNYRLYRRLNNRLEKEVDIIERRKPASLRRHYRRLSRLRIRLSDREALGYLLIGIV 216 (237)
T ss_pred HHHHHHHHHhHHHHHHccHhhcCChHHHHHHHHHHHhhhhhhchHHHHHHHHHHHH
Confidence 34555556678899999887766544 4666665542112347777766654433
No 158
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.44 E-value=4.2e+02 Score=25.68 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=46.6
Q ss_pred HhhhhhHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHhccchhhHHHHHHHHHHhHhCCcEEEEEEEcCCCCee
Q 006513 138 LLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTLVELSNTLGLQNCAVWMPNEIKTEM 217 (642)
Q Consensus 138 ~l~~~~~e~~l~~~~~~L~~e~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l 217 (642)
.-....+..+|......++++..++.+-+++...+..-.+.+....+...-....++.+...+. +.|++--.+.++..+
T Consensus 50 ~~~q~~~~~~L~~e~~~l~~~~aei~~l~~~~~~~~qr~q~~~~~q~~r~~~s~~le~L~~~lP-~~v~ltsL~~~g~~l 128 (206)
T COG3166 50 IAEQQQRNALLTTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQKRAGWSVLLEQLANLLP-ESVWLTSLKQQGDPL 128 (206)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcccchHHHHHHHHHHhCC-CceEEeeeeccCCcE
Confidence 3334556667777777788877777776666666554444444443333333345677777776 345554444444444
Q ss_pred EEE
Q 006513 218 NLT 220 (642)
Q Consensus 218 ~~~ 220 (642)
.++
T Consensus 129 ~l~ 131 (206)
T COG3166 129 ELS 131 (206)
T ss_pred EEE
Confidence 433
No 159
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.51 E-value=3.3e+02 Score=24.14 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Q 006513 121 ALVSCATSITLITLIPLLLKVKVR 144 (642)
Q Consensus 121 ~~v~~~~ai~l~~l~~~~l~~~~~ 144 (642)
+++.++++++++.+|.++..-+.+
T Consensus 11 a~igLvvGi~IG~li~Rlt~~~~k 34 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTNRKLK 34 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhh
Confidence 444455566666665555554443
No 160
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=31.80 E-value=44 Score=32.51 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=37.4
Q ss_pred eEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcc
Q 006513 478 HVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPE 553 (642)
Q Consensus 478 ~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e 553 (642)
.+.+||-+-+-+-.|+++|+.++....|-.-++-... .-+++|.-+|.|||.-
T Consensus 18 LmPGDPlRAK~iAetfLe~~~~vnevR~mlgfTGtYK-----------------------Gk~iSvmg~GmGipS~ 70 (236)
T COG0813 18 LMPGDPLRAKYIAETFLENAVCVNEVRGMLGFTGTYK-----------------------GKKISVMGHGMGIPSI 70 (236)
T ss_pred ecCCCCchHHHHHHHHHhhhhhhhhhcchhcccceec-----------------------CcEEEEEEecCCCccH
Confidence 4568999999999999999999754333332322222 2568888889998854
No 161
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=31.42 E-value=3.5e+02 Score=23.57 Aligned_cols=50 Identities=22% Similarity=0.149 Sum_probs=32.1
Q ss_pred HHHHHhhHhHHHHHHHhcCCCCchHHHHHHHHHHHHHhhHHHHHHHHcCch
Q 006513 55 IAVAYFSIPVELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPH 105 (642)
Q Consensus 55 ia~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 105 (642)
++-.|+++-..+++...+.. -.+..+...++++...|++++.+.+...+|
T Consensus 50 ~~G~~~g~Gl~~l~~~~~~~-~~~~al~~l~~~~~~~~lgRlis~~~dG~p 99 (124)
T PF14248_consen 50 YGGLYLGLGLLLLWAAFKPE-YRRPALRLLALFIGGGGLGRLISLALDGPP 99 (124)
T ss_pred HHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34456666666666554332 123355566778888999999999988433
No 162
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=31.21 E-value=4.3e+02 Score=24.41 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=20.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006513 103 GPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKV 143 (642)
Q Consensus 103 ~~~~~~~~~~~~~~~~~t~~v~~~~ai~l~~l~~~~l~~~~ 143 (642)
-.|.+++..+.-+.|++.-+..-+.....+-+.|-+|.+--
T Consensus 107 ~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvH 147 (188)
T KOG4050|consen 107 DHPLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVH 147 (188)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455565555566655544443333344445555555533
No 163
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=31.11 E-value=3e+02 Score=23.74 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006513 118 ILTALVSCATSITLITL 134 (642)
Q Consensus 118 ~~t~~v~~~~ai~l~~l 134 (642)
++.+.+.++.+..+...
T Consensus 76 liv~~~~l~la~i~~~~ 92 (121)
T PF07332_consen 76 LIVAGLYLLLALILLLI 92 (121)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544443
No 164
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=31.08 E-value=2.6e+02 Score=28.66 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 331 VALSHAAVLEESQHMREKLEEQNRALQQAQKDA 363 (642)
Q Consensus 331 ~al~~a~l~~e~~~~~~~l~~~~~~L~~a~~~~ 363 (642)
.......+++|.+++++++.+.+.+++...+++
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l 96 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELLKKNQQLEILTQNL 96 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445667777777777666655555544433
No 165
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=30.51 E-value=4.1e+02 Score=24.06 Aligned_cols=94 Identities=14% Similarity=0.075 Sum_probs=41.9
Q ss_pred HHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCC-----CCCCcc-ccCChhHHHHHhcCCeeEeCCCcchhhccCC
Q 006513 193 LVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYS-----DMCSSI-PITDQDVVRIKGSDGVNILGPDSELAAASSG 266 (642)
Q Consensus 193 ~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~-----~~~~~i-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 266 (642)
.+.++.+..+| ..+|.|..++..+.+.|.-+..... ..+..+ ...+|.+.+++.++.+.........
T Consensus 27 wql~ADLs~aD-l~l~v~~~~~~~vvvA~~rP~t~~t~y~~dvVG~~~~~~~ep~v~~a~~tg~~~~~~~~~~~------ 99 (145)
T PF12282_consen 27 WQLLADLSFAD-LFLWVPTKDGNAVVVAQARPSTAPTLYPDDVVGKVALRENEPAVDRALETGRPVRGGRAVWQ------ 99 (145)
T ss_dssp THHHHHHHTSE-EEEEEE-TTS-EEEEEEE--SSS--S--S--TT-EE-GGGSHHHHHHHH-------------------
T ss_pred HHHHHHhhcCC-EEEEEEcCCCCEEEEEEeCCCCCCCCCCCCCCCCccCccccHHHHHHHHhCCceecCCcccc------
Confidence 34556667775 8899999888744444433322221 223333 3346888888888875543221110
Q ss_pred CcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCC
Q 006513 267 ESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNE 309 (642)
Q Consensus 267 ~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~ 309 (642)
+..+...-.+|+.+.++. |||+....+
T Consensus 100 ---~~~~v~~~~~PI~~~~~v-------------IaVl~~~~~ 126 (145)
T PF12282_consen 100 ---GGVPVRQEVVPIRRNGRV-------------IAVLIRETN 126 (145)
T ss_dssp --------EEEEEEEEETTEE-------------EEEEEEE--
T ss_pred ---CCceeEEEEEEEEECCEE-------------EEEEEEEcc
Confidence 111344556787766544 788885433
No 166
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=30.34 E-value=1.3e+02 Score=24.14 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=16.5
Q ss_pred CCCCCcccCCCCCCCChhhhHHHHHhhhHHHHHH
Q 006513 25 NNFPRCNCDDDASSWSIESILETQKVSDFLIAVA 58 (642)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ia~a 58 (642)
.-.++|+|+. -++. +|-.-+..|.+..+.
T Consensus 21 ~~gscs~C~~----ls~g-~LaGiV~~D~vlTLL 49 (79)
T PF07213_consen 21 QPGSCSGCYP----LSPG-LLAGIVAADAVLTLL 49 (79)
T ss_pred CCCCCCCccc----cCHH-HHHHHHHHHHHHHHH
Confidence 3347888982 2344 555556667654443
No 167
>PRK11677 hypothetical protein; Provisional
Probab=30.18 E-value=4.1e+02 Score=23.88 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 006513 118 ILTALVSCATSITLITLIPLLL 139 (642)
Q Consensus 118 ~~t~~v~~~~ai~l~~l~~~~l 139 (642)
+++++|.++++++++++...-.
T Consensus 7 ~i~livG~iiG~~~~R~~~~~~ 28 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGNRKL 28 (134)
T ss_pred HHHHHHHHHHHHHHHhhccchh
Confidence 5788888999999999877665
No 168
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=29.84 E-value=87 Score=25.46 Aligned_cols=69 Identities=6% Similarity=0.121 Sum_probs=40.9
Q ss_pred HHhhhhchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccceeeeeeHHHHHHHHHHHH
Q 006513 377 MSNGMRRPMHSILGLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAMIKEAACLA 456 (642)
Q Consensus 377 ~sHelrtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~~~~~l~~~~~~L~~li~~~~~~~ 456 (642)
+.|-+||-++.+.+.+..-.+...+. .++.+.+.....-|.+. .+++.- -....++|.++++..+..+
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~~~s~--~~~~~~~~~Rl~ALa~a-~~ll~~---------~~~~~~~L~~lv~~~l~p~ 69 (83)
T PF07536_consen 2 LNHRVKNLLAVVQAIARQTARSAASV--EEFAEAFSGRLQALARA-HDLLSR---------SDWEGVSLRDLVEAELAPY 69 (83)
T ss_pred chhHHHHHHHHHHHHHHHHcccCCCH--HHHHHHHHHHHHHHHHH-HHHHhc---------CCCCCccHHHHHHHHHHhc
Confidence 57999999999999888765543332 23333343333333332 222221 1234789999999887654
Q ss_pred H
Q 006513 457 R 457 (642)
Q Consensus 457 ~ 457 (642)
.
T Consensus 70 ~ 70 (83)
T PF07536_consen 70 G 70 (83)
T ss_pred c
Confidence 3
No 169
>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.
Probab=29.36 E-value=4.9e+02 Score=24.56 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHhhhHHHHHHHhhHhHHHHHHHhc----CCCCchHHHHHHHHHH--HHHhhHHHHHHHHc
Q 006513 46 ETQKVSDFLIAVAYFSIPVELLYFISC----SNVPFKWVLIQFIAFI--VLCGLTHLLNGWTY 102 (642)
Q Consensus 46 ~~~~~sd~~ia~a~~~i~~~l~~~~~~----~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~ 102 (642)
+.|..-|+.+|.+...++-...--+++ .+......-...+.++ .+.-+.|.++.+-|
T Consensus 69 p~q~llDY~laf~~lGlaGlf~~~~~~~~~~~~~~~~~~~i~~g~~i~~~~r~~~h~isGvif 131 (177)
T PF09515_consen 69 PVQVLLDYPLAFGALGLAGLFAKPLQKTLKNNRYKKSYLNIILGTFIAVFLRYFCHFISGVIF 131 (177)
T ss_dssp HHHHHHHHTHHHHHGGGGGGG-----------SSS--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999988877765433332211 1122233333333333 34447888887664
No 170
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=28.91 E-value=3.1e+02 Score=22.06 Aligned_cols=28 Identities=4% Similarity=0.113 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhhhchH--HHHHHHHHHH
Q 006513 368 QARNAFQKVMSNGMRRPM--HSILGLLSIM 395 (642)
Q Consensus 368 ~~~~~~l~~~sHelrtPL--~~I~g~~~lL 395 (642)
..+.+|...|..||+||. +.+..+...+
T Consensus 28 ~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i 57 (81)
T cd07955 28 ALVARLREALADDLDTPKALAALDAWAREA 57 (81)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 456889999999999994 4455555544
No 171
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=28.23 E-value=4.4e+02 Score=23.63 Aligned_cols=89 Identities=11% Similarity=0.118 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcCCeeEeCCCcchhhccCC
Q 006513 187 TILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSG 266 (642)
Q Consensus 187 ~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 266 (642)
++.+.+++.+.+.++.+ +-..|.++.-+. .+- +.++-.-+....++..+++...+..+....
T Consensus 4 ~~Aq~Iv~~~~~~i~~~---inimd~~G~IIA--Std--------~~RIG~~HegA~~~i~~~~~~~i~~~~~~~----- 65 (135)
T PF05651_consen 4 ELAQKIVDEIMEIIGYN---INIMDENGIIIA--STD--------PERIGTFHEGAKEVIRTNKEIEITEEDAEQ----- 65 (135)
T ss_pred HHHHHHHHHHHHHcCCC---EEEECCCcEEEe--cCC--------hhhcCccCHHHHHHHHcCCcccccHhHHhh-----
Confidence 45667788888888864 323333332221 111 112222233445666666554443322110
Q ss_pred CcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCC
Q 006513 267 ESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNE 309 (642)
Q Consensus 267 ~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~ 309 (642)
-.|.+..+.+|+...++. +||+.+..+
T Consensus 66 ---~~g~k~GinlPI~~~g~~-------------iGviGItG~ 92 (135)
T PF05651_consen 66 ---YPGVKPGINLPIIFNGEV-------------IGVIGITGE 92 (135)
T ss_pred ---ccCCCcceeeeEEECCEE-------------EEEEEEecC
Confidence 125667788998855554 778877654
No 172
>COG4920 Predicted membrane protein [Function unknown]
Probab=28.05 E-value=5e+02 Score=25.05 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=13.9
Q ss_pred HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 99 GWTYGPHSFQLMLSLTVFKILTALVSCATSITLI 132 (642)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~t~~v~~~~ai~l~ 132 (642)
+.+|+|.+|..+ +++-.++.+...++.+
T Consensus 23 vlsffp~~f~tf------~ilyilf~~glsiVm~ 50 (249)
T COG4920 23 VLSFFPAEFFTF------LILYILFFFGLSIVMG 50 (249)
T ss_pred HHHHhhHHHHHH------HHHHHHHHHHHHHHHh
Confidence 455666655443 3444444554444444
No 173
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms]
Probab=27.91 E-value=4.6e+02 Score=30.43 Aligned_cols=67 Identities=10% Similarity=0.121 Sum_probs=48.9
Q ss_pred cCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCC-CccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006513 270 ESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNE-QFRTWSNQELEIVKVVADQVLVALSHAAVLEESQHMREK 348 (642)
Q Consensus 270 ~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~-~~~~~~~~e~~ll~~~a~qva~al~~a~l~~e~~~~~~~ 348 (642)
..+....+++|+... .+..+||..+.+. .+..|+..+..+++.++.-++..+.++..+......+-+
T Consensus 278 ~~~~~~il~~pi~~~------------~~~~igv~~~~nk~~g~~f~~~de~~~~~~~~~~gl~i~~~~~y~~~~~s~~r 345 (707)
T KOG3689|consen 278 GTGIRPILCIPIKNK------------KGEVIGVQQLVNKEDGNPFSRNDEDLFEAFTIFCGLSIHNTHMYSKINKSEPR 345 (707)
T ss_pred ccccceeEEEecccc------------cCceecceeeeccccCCccccchHHHHHHHHHHHhhhhhhhhhHHHHhhhccc
Confidence 345555888887654 2233667666555 345799999999999999999999999888776665443
No 174
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=27.01 E-value=9e+02 Score=28.04 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006513 117 KILTALVSCATSITLITLIPLLLKVKV 143 (642)
Q Consensus 117 ~~~t~~v~~~~ai~l~~l~~~~l~~~~ 143 (642)
.-+..++.+.+|++...+++.....+.
T Consensus 483 ~alA~v~Gi~~A~l~f~lirp~~~~r~ 509 (652)
T PRK10631 483 SALGQIVGCFLALIVILLVRDNSRDRT 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 445555555566555566555533333
No 175
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.67 E-value=91 Score=31.52 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhH
Q 006513 145 EFMLKKKAWDLGREVGIIMKQKEAGVH 171 (642)
Q Consensus 145 e~~l~~~~~~L~~e~~~~~~~~~~~~~ 171 (642)
+..|.++.+||+|..+++++||++...
T Consensus 66 q~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 66 QAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 334444458888888888877777654
No 176
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.34 E-value=3.4e+02 Score=21.70 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.6
Q ss_pred HHHhccchhhH
Q 006513 178 EIRKSLDRHTI 188 (642)
Q Consensus 178 ~i~~~ld~~~i 188 (642)
++....|++.|
T Consensus 53 ei~~l~~~~rI 63 (85)
T TIGR02209 53 EVAELSRHERI 63 (85)
T ss_pred HHHHHcCHHHH
Confidence 34433444444
No 177
>PRK11477 carbohydrate diacid transcriptional activator CdaR; Provisional
Probab=25.77 E-value=8.2e+02 Score=25.96 Aligned_cols=88 Identities=8% Similarity=0.040 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCCCCCCCCCccccCChhHHHHHhcCCeeEeCCCcchhhccCC
Q 006513 187 TILYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGRNYSDMCSSIPITDQDVVRIKGSDGVNILGPDSELAAASSG 266 (642)
Q Consensus 187 ~il~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 266 (642)
++.+.+++++.+.++.+ |-+.|+++.-+. +.. +.++-.-+....++..+++...+..+....
T Consensus 9 ~lAq~IV~~~~~ii~~n---inimd~~G~IIa---S~d-------~~Rig~~HegA~~~~~~~~~~~i~~~~~~~----- 70 (385)
T PRK11477 9 KMAQDIVARTMRIIDTN---INVMDARGRIIG---SGD-------RERIGELHEGALLVLSQGRVVDIDDAVARH----- 70 (385)
T ss_pred HHHHHHHHHHHHHcCCC---eEEECCCCEEEe---cCC-------hHHcccccHHHHHHHhcCCeeeecHHHHhh-----
Confidence 45667778888888763 333344432222 110 112222233345566666666664432111
Q ss_pred CcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeC
Q 006513 267 ESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPN 308 (642)
Q Consensus 267 ~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~ 308 (642)
-.|.+..+.+|+...+.. +||+.+..
T Consensus 71 ---~~g~k~GiN~Pi~~~~~v-------------iGvIgItG 96 (385)
T PRK11477 71 ---LHGVRQGINLPLRLEGEI-------------VGVIGLTG 96 (385)
T ss_pred ---cCCCCcCceeeEEECCEE-------------EEEEecCC
Confidence 234667788998855554 67877653
No 178
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=25.18 E-value=9.8e+02 Score=27.18 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHhccchhhHHHHHH
Q 006513 114 TVFKILTALVSCATSITLITLIPLLLKVKVREFMLKKKAWDLGREVGIIMKQKEAGVHVRMLTQEIRKSLDRHTILYTTL 193 (642)
Q Consensus 114 ~~~~~~t~~v~~~~ai~l~~l~~~~l~~~~~e~~l~~~~~~L~~e~~~~~~~~~~~~~l~~lt~~i~~~ld~~~il~~~~ 193 (642)
....+.+++-++..++.+.-++-+-+....|...++...++|+.++.++...-.+. =..+..+|..--+.+..++.+-
T Consensus 295 ~~~~~~~~~~l~~~~~l~~~~~~Rr~~~~~r~~~~~~a~~eLE~rV~eRTadL~~~--n~~l~~EIaer~~ae~~LR~~Q 372 (603)
T COG4191 295 RTARLAAILTLALLALLLALWLRRRRRARLRLAELQEARAELERRVEERTADLTRA--NARLQAEIAEREQAEAALRRAQ 372 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666655666666666555555566666665543332222 2234556665566666677666
Q ss_pred HHHHhHh
Q 006513 194 VELSNTL 200 (642)
Q Consensus 194 ~~l~~~l 200 (642)
+++.+.=
T Consensus 373 deLvQA~ 379 (603)
T COG4191 373 DELVQAG 379 (603)
T ss_pred HHHHHHH
Confidence 6665543
No 179
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=25.07 E-value=1.1e+02 Score=26.42 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 006513 80 VLIQFIAFIVLCGLTHLLNGWT 101 (642)
Q Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~ 101 (642)
+-+.|++-|+++..++.+-++=
T Consensus 60 ~~iffavcI~l~~~s~~lLI~W 81 (118)
T PF10856_consen 60 LHIFFAVCILLICISAILLIFW 81 (118)
T ss_pred eEEehHHHHHHHHHHHHhheee
Confidence 3344444555554444444433
No 180
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=24.00 E-value=3.7e+02 Score=21.88 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 006513 120 TALVSCATSITLITL 134 (642)
Q Consensus 120 t~~v~~~~ai~l~~l 134 (642)
++++.+++.++++.+
T Consensus 9 lall~~IvsLiL~~i 23 (82)
T PF11773_consen 9 LALLATIVSLILGQI 23 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555555
No 181
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=23.80 E-value=2.8e+02 Score=23.32 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHHH----hhHHHHHHHH
Q 006513 77 FKWVLIQFIAFIVLC----GLTHLLNGWT 101 (642)
Q Consensus 77 ~~~~~~~~~~~i~~~----~~~~~~~~~~ 101 (642)
|.|.++.++.|.++. .+|-.+++++
T Consensus 7 fIW~~l~~g~~~i~~~~D~~~GfslS~L~ 35 (97)
T PF08611_consen 7 FIWVILVYGGFFILAFKDYAMGFSLSYLT 35 (97)
T ss_pred HHHHHHHHhHHHHhhhhhHHHHHHHHHHH
Confidence 456666666655433 2444455544
No 182
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=23.30 E-value=27 Score=34.99 Aligned_cols=7 Identities=14% Similarity=0.667 Sum_probs=0.0
Q ss_pred EEEEEcC
Q 006513 206 AVWMPNE 212 (642)
Q Consensus 206 ~i~l~~~ 212 (642)
.||++-.
T Consensus 180 LIWlY~H 186 (381)
T PF05297_consen 180 LIWLYVH 186 (381)
T ss_dssp -------
T ss_pred HHHHHhc
Confidence 4555543
No 183
>TIGR00799 mtp Golgi 4-transmembrane spanning transporter. The proteins of the MET family have 4 TMS regions and are located in late endosomal or lysosomal membranes. Substrates of the mouse MTP transporter include thymidine, both nucleoside and nucleobase analogues, antibiotics, anthracyclines, ionophores and steroid hormones. MET transporters may be involved in the subcellular compartmentation of steroid hormones and other compounds.Drug sensitivity by mouse MET was regulated by compounds that inhibit lysosomal function, interface with intracellular cholesterol transport, or modulate the multidrug resistance phenotype of mammalian cells. Thus, MET family members may compartmentalize diverse hydrophobic molecules, thereby affecting cellular drug sensitivity,nucleoside/nucleobase availability and steroid hormone responses.
Probab=23.23 E-value=7.3e+02 Score=24.46 Aligned_cols=92 Identities=24% Similarity=0.293 Sum_probs=51.1
Q ss_pred hHHHHHhhhHHHHHHHhhHhHHHHHHH-hcC-CC--CchHHHHHHHHH----HHHHh-hHHHHHHHHc-------CchhH
Q 006513 44 ILETQKVSDFLIAVAYFSIPVELLYFI-SCS-NV--PFKWVLIQFIAF----IVLCG-LTHLLNGWTY-------GPHSF 107 (642)
Q Consensus 44 ~~~~~~~sd~~ia~a~~~i~~~l~~~~-~~~-~~--~~~~~~~~~~~~----i~~~~-~~~~~~~~~~-------~~~~~ 107 (642)
+.--+..|.++..-+.|.|++.+++++ +++ .. ||. .++++=| +.+|| +-.+++-.-+ +--||
T Consensus 55 ~~ia~~~ss~~~~~~l~~~slsll~gvI~~r~~~l~pfl--~~Qi~D~~~cll~~~g~yie~pa~l~~~~~~~~~~liPF 132 (258)
T TIGR00799 55 LRIADLYSSFLLINALFIISVSLLMGVVKNREKYLYPFL--SLQIMDFLLCLLTLLGSYIELPAYLKLARPRPGPSKIPL 132 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeHHH--HHHHHHHHHHHHHHhhhhhcchhhhhhccccCccccchH
Confidence 334466677777778888998888886 444 32 443 4454433 33443 1112222222 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006513 108 QLMLSLTVFKILTALVSCATSITLITLIPLLLKVKV 143 (642)
Q Consensus 108 ~~~~~~~~~~~~t~~v~~~~ai~l~~l~~~~l~~~~ 143 (642)
.- ..++-|.++++||+....-+|.++..+.
T Consensus 133 fc------lQifDF~Ls~Lta~ss~~ylp~y~~~~~ 162 (258)
T TIGR00799 133 MT------LQLLDFCLSILTLCSSYMEVPTYLNFKS 162 (258)
T ss_pred HH------HHHHHHHHHHHHHhhhheechHHHHHHH
Confidence 22 1466778888888888777776655544
No 184
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=23.20 E-value=62 Score=20.76 Aligned_cols=11 Identities=9% Similarity=-0.076 Sum_probs=9.7
Q ss_pred EEEEEEECCCC
Q 006513 539 IRFEILLNEVG 549 (642)
Q Consensus 539 v~i~V~D~G~G 549 (642)
.+|+|.|+||-
T Consensus 14 ~qITIeD~GPK 24 (30)
T PF07492_consen 14 FQITIEDTGPK 24 (30)
T ss_pred cEEEEecCCCe
Confidence 78999999984
No 185
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=22.66 E-value=4e+02 Score=21.34 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=26.1
Q ss_pred HHHHHHhhHhHHHHHH----Hh-----c--CCCCchHHHHHHHHHHHHHhhHHH
Q 006513 54 LIAVAYFSIPVELLYF----IS-----C--SNVPFKWVLIQFIAFIVLCGLTHL 96 (642)
Q Consensus 54 ~ia~a~~~i~~~l~~~----~~-----~--~~~~~~~~~~~~~~~i~~~~~~~~ 96 (642)
+||+....||..++-. .+ . ...|+.|+=++.|.+..+.|++-+
T Consensus 4 ~iAlliLvIPg~~a~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi 57 (77)
T PF11118_consen 4 FIALLILVIPGILAAYGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFI 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 5788888888877653 11 1 233556666666666666665543
No 186
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=22.65 E-value=5.2e+02 Score=22.59 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=11.5
Q ss_pred HHHHHHHHHhccchhhHHHHH
Q 006513 172 VRMLTQEIRKSLDRHTILYTT 192 (642)
Q Consensus 172 l~~lt~~i~~~ld~~~il~~~ 192 (642)
..++-+++..-...+.|++.+
T Consensus 83 ~~dlkqeV~dLss~eRIldiA 103 (120)
T COG4839 83 NDDLKQEVKDLSSPERILDIA 103 (120)
T ss_pred hhhHHHHHHHhccHHHHHHHH
Confidence 444555555555566666553
No 187
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=22.28 E-value=9.2e+02 Score=25.30 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 006513 122 LVSCATSITLITLIPLLLKVKVREFMLKK 150 (642)
Q Consensus 122 ~v~~~~ai~l~~l~~~~l~~~~~e~~l~~ 150 (642)
+..+.+.+++-.++-+.+.+..|....++
T Consensus 234 l~l~~~~~l~~~l~~Rwl~v~~RRLA~~R 262 (340)
T PF12794_consen 234 LYLLLGWLLVYQLILRWLLVARRRLAYER 262 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556677777777777665444
No 188
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=21.65 E-value=2.1e+02 Score=28.32 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=36.3
Q ss_pred eEEecHHHHHHHHHHHHHHhhcccCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcch
Q 006513 478 HVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEV 554 (642)
Q Consensus 478 ~v~~D~~~l~qvl~NLl~NAik~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~ 554 (642)
.+.+||.|..++-. +++|+.+-.....-.+..-...+ -.+.|.-+|+|-|...
T Consensus 21 ilpGdP~R~~~iA~-lld~~~~va~~Ref~~~~g~~~g-----------------------~~v~v~StGIGgPSaa 73 (248)
T COG2820 21 ILPGDPERVEKIAK-LLDNPVLVASNREFRTYTGTYNG-----------------------KPVTVCSTGIGGPSAA 73 (248)
T ss_pred EecCCHHHHHHHHH-HhccchhhhhccceEEEEEEEcC-----------------------eEEEEEecCCCCchHH
Confidence 56799999999887 88999873333323333333332 5689999999987643
No 189
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.46 E-value=7.2e+02 Score=23.76 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=11.0
Q ss_pred HHhhhHHHHHHHhhHhHHHHHHHh
Q 006513 48 QKVSDFLIAVAYFSIPVELLYFIS 71 (642)
Q Consensus 48 ~~~sd~~ia~a~~~i~~~l~~~~~ 71 (642)
..++..++.++.+.+-+....++|
T Consensus 6 eiI~~vLLliG~~f~ligaIGLlR 29 (197)
T PRK12585 6 EIIISIMILIGGLLSILAAIGVIR 29 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555544444444444443
No 190
>cd00546 QFR_TypeD_subunitC Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=21.39 E-value=3e+02 Score=24.27 Aligned_cols=60 Identities=10% Similarity=0.197 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 006513 80 VLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVR 144 (642)
Q Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~~~ai~l~~l~~~~l~~~~~ 144 (642)
+++++|+|-+.-|-...-+...|.-+|.. -...+++.+.++.-+.+-..+.|+...+..+
T Consensus 37 lvLl~Gl~~L~~g~~aw~~f~~flqnPiv-----~~lniiaL~a~L~Ha~TwF~~~Pkam~i~v~ 96 (124)
T cd00546 37 LVLLYGLFALGSGPESWAGFVSFLQNPIV-----VLLNIIALAAALLHAKTWFEMAPKVMNIIVK 96 (124)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhCcHH-----HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 45566666555554444444445333432 3346888888888899999999998887553
No 191
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=21.19 E-value=1.3e+03 Score=26.54 Aligned_cols=124 Identities=14% Similarity=0.012 Sum_probs=61.0
Q ss_pred HHHHHHHHHhHhCCcEEEEEEEcCCCCeeEEEEEecCC------CCCCCCCc---cccCChhHHHHHhcCCeeEeCCCcc
Q 006513 189 LYTTLVELSNTLGLQNCAVWMPNEIKTEMNLTHQLNGR------NYSDMCSS---IPITDQDVVRIKGSDGVNILGPDSE 259 (642)
Q Consensus 189 l~~~~~~l~~~l~~~~~~i~l~~~~~~~l~~~~~~~~~------~~~~~~~~---i~~~~~~~~~~~~~~~~~~l~~~~~ 259 (642)
....++.+.+.+.-..+.+.+-|.++..+.....-... .. ..+.. -.++...++-+..+++++.+.....
T Consensus 57 a~~~l~~l~~~l~~~~~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~-~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH 135 (638)
T PRK11388 57 GQAALEDAWEYMADRECALLILDETGCILSRNGDPQTLQQLSALGF-NDGTYCAEGIIGTNALSLAAISGQPVKTMGDQH 135 (638)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCceEEEEeCCHHHHHHHHHcCC-ccCCccchhccCcCHHHHHHhcCCceEEecHHH
Confidence 34456666666666568888888877655432111000 00 00111 1122244666677777666643322
Q ss_pred hhhccCCCcccCCceeEEEecceeccccCCCcchhhccceeeEEEEeeCCCccCCchhHHHHHHHHHHHHHHHH
Q 006513 260 LAAASSGESVESGPVAAIRMPMLRVSNFKGGTPELVSACYAILVLVLPNEQFRTWSNQELEIVKVVADQVLVAL 333 (642)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~Pl~~~~~~~g~~p~~~~~~~~igvl~l~~~~~~~~~~~e~~ll~~~a~qva~al 333 (642)
.... ...-++...|+. .+.+..+|++.+.... ...++....++..++.++...+
T Consensus 136 ~~~~-------~~~~~c~aaPI~------------d~~G~liGvl~l~~~~-~~~~~~~l~lv~~~a~~Ie~~l 189 (638)
T PRK11388 136 FKQA-------LHNWAFCATPVF------------DSKGRLTGTIALACPV-EQTSAADLPLTLSIAREVGNLL 189 (638)
T ss_pred HHHh-------ccCceEEeeEEE------------cCCCCEEEEEEEEecc-cccChhhHHHHHHHHHHHHHHH
Confidence 2111 122334455554 3345567888776643 3344555666666555555444
No 192
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=21.12 E-value=1.3e+02 Score=35.13 Aligned_cols=49 Identities=8% Similarity=0.167 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhc-c-cCCCCEEEEEEEEecCCCCccccccccccccCCCCceEEEEEEEECCCCCCcchh
Q 006513 484 RRVFQVILHMVGSLLN-C-NSRRGTVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVS 555 (642)
Q Consensus 484 ~~l~qvl~NLl~NAik-~-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~Gi~~e~~ 555 (642)
.-+.+|+...+.||.. - -+.-..+.+.+..+. -.++|.+||.|||-+..
T Consensus 52 pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~-----------------------~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 52 PGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEK-----------------------NEISVYNNGKGIPVTIH 102 (842)
T ss_pred CcHHHHHHHHhhcccccccCCCcceeEEEEccCC-----------------------CEEEEEeCCCcceeeec
Confidence 3478888888889887 1 122345666665554 45899999999986654
No 193
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=20.75 E-value=4e+02 Score=28.66 Aligned_cols=20 Identities=5% Similarity=-0.009 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhhhhH
Q 006513 125 CATSITLITLIPLLLKVKVR 144 (642)
Q Consensus 125 ~~~ai~l~~l~~~~l~~~~~ 144 (642)
+++.++++.++-.++..+.+
T Consensus 52 ~~~~~~~~~l~~~~~~~p~~ 71 (409)
T TIGR00540 52 LAIIFAFEWGLRRFFRLGAH 71 (409)
T ss_pred HHHHHHHHHHHHHHHHccHH
Confidence 33333556666666666543
No 194
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=20.65 E-value=63 Score=32.25 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=23.8
Q ss_pred CCccchHHHHHHHHHHcCCEEEEEecCCCCceEEEEEEEeecCC
Q 006513 571 IEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 571 ~G~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
..+||||+||+++++. +++..++++.|-....+
T Consensus 11 anSglGl~i~~RLl~~-----------~De~~~ltl~ltcR~~~ 43 (341)
T KOG1478|consen 11 ANSGLGLAICKRLLAE-----------DDENVRLTLCLTCRNMS 43 (341)
T ss_pred CCCcccHHHHHHHHhc-----------cCCceeEEEEEEeCChh
Confidence 3689999999999876 23456777777765443
No 195
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=20.48 E-value=6.5e+02 Score=23.25 Aligned_cols=10 Identities=10% Similarity=0.311 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 006513 403 DQRMIVETMM 412 (642)
Q Consensus 403 ~~~~~l~~i~ 412 (642)
.++.+++...
T Consensus 150 ~~~~lid~~i 159 (167)
T PRK14475 150 KSDPLVDAAI 159 (167)
T ss_pred HHHHHHHHHH
Confidence 3444554443
No 196
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=20.32 E-value=84 Score=23.84 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=17.1
Q ss_pred HHHHHHHhhhhchH--HHHHHHHHHHhc
Q 006513 372 AFQKVMSNGMRRPM--HSILGLLSIMQD 397 (642)
Q Consensus 372 ~~l~~~sHelrtPL--~~I~g~~~lL~~ 397 (642)
+|...|..|++||. +.|..++..+..
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 47889999999994 455555555443
No 197
>PRK13603 fumarate reductase subunit C; Provisional
Probab=20.31 E-value=3.4e+02 Score=23.95 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 006513 80 VLIQFIAFIVLCGLTHLLNGWTYGPHSFQLMLSLTVFKILTALVSCATSITLITLIPLLLKVKVRE 145 (642)
Q Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~~~ai~l~~l~~~~l~~~~~e 145 (642)
+++++|+|-+.-|--..-+-..|.-+|.. -...+++.+.++.-+.+-..+.|+...+.++.
T Consensus 37 lvLl~Gl~~L~~G~~aw~~f~~flqnPiv-----v~lniiaL~a~L~Ha~TwF~~~Pkam~I~v~~ 97 (126)
T PRK13603 37 LYLVLVLRAVGAGGNSYQRFLDFSANPVV-----VVLNVVALSFLLLHAVTWFGSAPRAMVIQVRG 97 (126)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHhCcHH-----HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Confidence 44555655555443333333345333332 33468888888888999999999998876543
Done!