Query 006513
Match_columns 642
No_of_seqs 413 out of 3731
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 18:40:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006513.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2140-2144//hhsearch_pdb/006513hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 1.0 1 1 279.8 30.5 229 363-613 13-250 (258)
2 4ew8_A Sensor protein DIVL; si 1.0 1 1 266.6 30.0 234 356-615 26-260 (268)
3 1gkz_A [3-methyl-2-oxobutanoat 1.0 1 1 265.7 26.7 228 365-616 116-378 (388)
4 3jz3_A Sensor protein QSEC; he 1.0 1 1 258.2 13.5 218 370-614 2-220 (222)
5 2btz_A Pyruvate dehydrogenase 1.0 1 1 257.4 24.3 218 372-614 97-353 (394)
6 2q8g_A [pyruvate dehydrogenase 1.0 1 1 256.9 25.4 218 370-613 106-365 (407)
7 2e0a_A Pyruvate dehydrogenase 1.0 1 1 254.6 27.2 218 372-614 97-353 (394)
8 3a0r_A Sensor protein; four he 1.0 1 1 250.7 23.4 216 368-613 130-347 (349)
9 1y8o_A [pyruvate dehydrogenase 1.0 1 1 249.5 25.6 217 371-613 119-376 (419)
10 3d36_A Sporulation kinase B; G 1.0 1 1 243.8 24.3 221 367-618 11-232 (244)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=1.00 E-value=1 Score=279.82 Aligned_cols=229 Identities=15% Similarity=0.211 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 999999999999999731001079999999988216---99978999999999999999999999984154458986520
Q 006513 363 ALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDV---NLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLE 439 (642)
Q Consensus 363 ~~~a~~~~~~ll~~isHelrtPL~~I~g~~~lL~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~g~~~l~ 439 (642)
+.+.++.+.+|++.++||+||||++|.++++++.+. ...++.+++++.|.+.+.++..++++++++++.+.+...+.
T Consensus 13 l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 92 (258)
T 2c2a_A 13 LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQIN 92 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999987003415878999999999984224789999999999999999999999999999988527886676
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCC---CEEEEEEEEECC
Q ss_conf 14431999999999999989863397599986899998088249899999999999760336999---879999997159
Q 006513 440 IRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRR---GTVLFRVVSENG 516 (642)
Q Consensus 440 ~~~~~L~~li~~~~~~~~~~~~~~~i~l~~~i~~~lp~~v~~D~~~l~qVl~NLi~NAik~~~~~---g~I~i~v~~~~~ 516 (642)
.+++++.+++++++..+...+..+++.+.++.+...+..+.+|+.++.||+.||++||+||++.+ +.|.+.+...++
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~ 172 (258)
T 2c2a_A 93 REKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDG 172 (258)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETT
T ss_pred CCEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
T ss_conf 61355999999999999999997696798504889882587499999999999999898527478986369999954798
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCC---CCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 8775652110123567899529999998879999920132102365235579---9998653399999999981999999
Q 006513 517 SQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN---EGIEDRMSFSVCKKLVQLMQGNIWM 593 (642)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~e~~~~if~~f~~~~~~---~~~g~GLGL~i~k~iv~~~gG~I~v 593 (642)
. +.+.|+|+|+||+++..+++|++|++.... ...|+||||+|||++++.|||+|++
T Consensus 173 ~---------------------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v 231 (258)
T 2c2a_A 173 G---------------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV 231 (258)
T ss_dssp E---------------------EEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEE
T ss_pred E---------------------EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 6---------------------9999996589889789886626651578887779997615799999999986998999
Q ss_pred EECCCCCCEEEEEEEEEECC
Q ss_conf 84389984699999983049
Q 006513 594 VPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 594 ~s~~~g~Gt~f~i~LP~~~~ 613 (642)
.|. +|+|++|+++||....
T Consensus 232 ~s~-~~~Gt~f~i~lP~~~~ 250 (258)
T 2c2a_A 232 ESE-VGKGSRFFVWIPKDRA 250 (258)
T ss_dssp EEE-TTTEEEEEEEEECCC-
T ss_pred EEC-CCCCCEEEEEEECCCC
T ss_conf 863-8998289999607877
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=1.00 E-value=1 Score=266.59 Aligned_cols=234 Identities=20% Similarity=0.288 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999999997310010799999999882169-99789999999999999999999999841544589
Q 006513 356 LQQAQKDALMASQARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSG 434 (642)
Q Consensus 356 L~~a~~~~~~a~~~~~~ll~~isHelrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~g 434 (642)
+++..+++++.++.+..|++.++||+||||++|.++++++.+.. .+++.+++++.+.+..+++..++++++++++.+.+
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999988987528999999999986266898899999999999999999999999999986447
Q ss_pred CCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE
Q ss_conf 86520144319999999999999898633975999868999980882498999999999997603369998799999971
Q 006513 435 RFPLEIRSFRLHAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSE 514 (642)
Q Consensus 435 ~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~l~~~i~~~lp~~v~~D~~~l~qVl~NLi~NAik~~~~~g~I~i~v~~~ 514 (642)
...+...++++.+++.++...+...+..+++.+.++++.+.+ .+.+|+..+.+|+.||+.||+||++.++.|.|.+...
T Consensus 106 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~ 184 (268)
T 4ew8_A 106 EMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA 184 (268)
T ss_dssp CCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-EEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 761266633699999999999876542038249998188782-6856999999999999999997189997799999966
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 59877565211012356789952999999887999992013210236523557999986533999999999819999998
Q 006513 515 NGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMV 594 (642)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~g~GLGL~i~k~iv~~~gG~I~v~ 594 (642)
++. +.+.|.|+|+||+++..+++|++|+++. ..|+|+||++|+.+++.|||+|++.
T Consensus 185 ~~~---------------------~~i~V~D~G~Gi~~~~~~~if~~~~~~~---~~g~GlGL~i~~~~~~~~gG~i~i~ 240 (268)
T 4ew8_A 185 LGE---------------------VRLDVSDTGRGVPFHVQAHIFDRFVGRD---RGGPGLGLALVKALVELHGGWVALE 240 (268)
T ss_dssp SSE---------------------EEEEEEESSCCCCHHHHTTTTSTTCCCS---SCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred CCE---------------------EEEEEECCCCCCCHHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 987---------------------9999973899989899998888986689---9998433999999999839989999
Q ss_pred ECCCCCCEEEEEEEEEECCCC
Q ss_conf 438998469999998304999
Q 006513 595 PSSHGFAQSMGLVLRFQLRPS 615 (642)
Q Consensus 595 s~~~g~Gt~f~i~LP~~~~~~ 615 (642)
+. +|+|++|++.||....+.
T Consensus 241 s~-~~~Gt~~~i~lP~~~~~~ 260 (268)
T 4ew8_A 241 SE-PGNGSTFTCHLPETQQPG 260 (268)
T ss_dssp EC-TTSCEEEEEEEECCC---
T ss_pred EC-CCCCEEEEEEECCCCCCC
T ss_conf 66-999779999936888988
No 3
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=1.00 E-value=1 Score=265.73 Aligned_cols=228 Identities=8% Similarity=0.045 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 9999999999999731001079999-999988216999789999999999999999999999841544589865201443
Q 006513 365 MASQARNAFQKVMSNGMRRPMHSIL-GLLSIMQDVNLNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSF 443 (642)
Q Consensus 365 ~a~~~~~~ll~~isHelrtPL~~I~-g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~g~~~l~~~~~ 443 (642)
+.++.+..+++.++||+||||+.|. |+.+++.....+++.+++++.+..+..++..++++++++++.+.+...+..+++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf 89999999999999874328999999999998622682889999999999899999999999987245898201023788
Q ss_pred EHHHHHHHHHHHHHHHHHHC---CCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCC--------EEEEEEE
Q ss_conf 19999999999999898633---975999868999980882498999999999997603369998--------7999999
Q 006513 444 RLHAMIKEAACLARCLSIYR---GFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG--------TVLFRVV 512 (642)
Q Consensus 444 ~L~~li~~~~~~~~~~~~~~---~i~l~~~i~~~lp~~v~~D~~~l~qVl~NLi~NAik~~~~~g--------~I~i~v~ 512 (642)
++.+++++++..++..+..+ .+.+.++.+.+ ..+.+|+.++.||+.||+.||+||+..++ .|.|.+.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~--~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA--ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT--CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC--CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
T ss_conf 8999999999999999998518997079970478--71565489999999999999999855015677888998899999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCC-----------------------
Q ss_conf 715987756521101235678995299999988799999201321023652355799-----------------------
Q 006513 513 SENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNE----------------------- 569 (642)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~----------------------- 569 (642)
..++ .+.|.|+|+|+||+++.++++|++|+++....
T Consensus 274 ~~~~---------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (388)
T 1gkz_A 274 NNDV---------------------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGP 332 (388)
T ss_dssp ECSS---------------------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------C
T ss_pred ECCC---------------------EEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
T ss_conf 4798---------------------7999999807886978988763844505788655443221000001245567898
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEEECCCCC
Q ss_conf 99865339999999998199999984389984699999983049999
Q 006513 570 GIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRPSX 616 (642)
Q Consensus 570 ~~g~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~~~ 616 (642)
..|+||||+|||.+++.|||+|++.|. +|.|++|+++||.......
T Consensus 333 ~~G~GLGL~i~r~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~~~~ 378 (388)
T 1gkz_A 333 MHGFGFGLPTSRAYAEYLGGSLQLQSL-QGIGTDVYLRLRHIDGREE 378 (388)
T ss_dssp CSCSSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEECSSSCCC
T ss_pred CCCCCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCCCCC
T ss_conf 687267899999999996997899963-8984799999538998888
No 4
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=1.00 E-value=1 Score=258.16 Aligned_cols=218 Identities=9% Similarity=0.085 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHH
Q ss_conf 9999999973100107999999998821699-978999999999999999999999984154458986520144319999
Q 006513 370 RNAFQKVMSNGMRRPMHSILGLLSIMQDVNL-NSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLHAM 448 (642)
Q Consensus 370 ~~~ll~~isHelrtPL~~I~g~~~lL~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~g~~~l~~~~~~L~~l 448 (642)
+.+|++.++||+||||++|.++++++..... ++..+++++.+.+..+++..++++++++++.+.+.......++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 77899997687447599999999998643588478999999999999999999999998997413587667355779999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 99999999989863397599986899998088249899999999999760336999879999997159877565211012
Q 006513 449 IKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWATW 528 (642)
Q Consensus 449 i~~~~~~~~~~~~~~~i~l~~~i~~~lp~~v~~D~~~l~qVl~NLi~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~~~ 528 (642)
+++++..+...+..+++.+.++++++.+ .+.+|+..+.+|+.||+.||+||++.++.|.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~~~-------------- 146 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI-KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNAD-------------- 146 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC-EEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEECSS--------------
T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCE-EEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC--------------
T ss_conf 9999998777899708758986088650-7736899999999999999987398998699997267--------------
Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 35678995299999988799999201321023652355799998653399999999981999999843899846999999
Q 006513 529 RQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVL 608 (642)
Q Consensus 529 ~~~~~~~~~~i~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~g~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~L 608 (642)
.+.|+|+|+||+++..+++|++|++.......|+|+||++||++++.|||+|+++|. +|+|++|++++
T Consensus 147 -----------~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~i~s~-~~~Gt~v~~~~ 214 (222)
T 3jz3_A 147 -----------NFIVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNA-EQGGFEAKVSW 214 (222)
T ss_dssp -----------EEEEECSCC--------------------------CTHHHHHHHHHHTTCEEECCBC-TTSSBEEEEEC
T ss_pred -----------EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECC-CCCCEEEEEEE
T ss_conf -----------389987899979999999986325089999995463599999999984998999728-99957999963
Q ss_pred EEECCC
Q ss_conf 830499
Q 006513 609 RFQLRP 614 (642)
Q Consensus 609 P~~~~~ 614 (642)
|....+
T Consensus 215 P~~~~~ 220 (222)
T 3jz3_A 215 LEHHHH 220 (222)
T ss_dssp CCC---
T ss_pred CCCCCC
T ss_conf 677998
No 5
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=1.00 E-value=1 Score=257.45 Aligned_cols=218 Identities=10% Similarity=0.083 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHC-----HHHHHHHHHHHHHCCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHCCCCC-CCCCCE
Q ss_conf 999999731001-----07999999998821699978----999999--999999999999999984154458-986520
Q 006513 372 AFQKVMSNGMRR-----PMHSILGLLSIMQDVNLNSD----QRMIVE--TMMKSSNVLSTLISDVMDNSPKDS-GRFPLE 439 (642)
Q Consensus 372 ~ll~~isHelrt-----PL~~I~g~~~lL~~~~~~~~----~~~~l~--~i~~~~~~l~~li~~ll~~sr~e~-g~~~l~ 439 (642)
.+++.++||||| ||+.|.|+++++.+...++. .+++++ .+.+.+.++ ++++++++++.+. +..+..
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCC
T ss_conf 9999999999850220179999999999876057866689999999999985327999--99999998522246788764
Q ss_pred E----EEEEHHHHHHHHHHHHHHHHHH-----CCCEEEEEE---CCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCC--
Q ss_conf 1----4431999999999999989863-----397599986---8999980882498999999999997603369998--
Q 006513 440 I----RSFRLHAMIKEAACLARCLSIY-----RGFGFSIEV---DRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG-- 505 (642)
Q Consensus 440 ~----~~~~L~~li~~~~~~~~~~~~~-----~~i~l~~~i---~~~lp~~v~~D~~~l~qVl~NLi~NAik~~~~~g-- 505 (642)
. +++++.+++++++..++..+.. +++.+.+.. +.. +..+.+|+.++.||+.||++||+||++.++
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 253 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQ-PIHMVYVPSHLYHMLFELFKNAMRATVESHES 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS-CCEEEECHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 02026887899999999999999999961789976999722678887-73899558999999999999999976502566
Q ss_pred -----EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCC--------CCCC
Q ss_conf -----799999971598775652110123567899529999998879999920132102365235579--------9998
Q 006513 506 -----TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN--------EGIE 572 (642)
Q Consensus 506 -----~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~e~~~~if~~f~~~~~~--------~~~g 572 (642)
.|.|.+...++ .+.|.|+|+|+||+++.++++|++|+++... ...|
T Consensus 254 ~~~~~~I~I~~~~~~~---------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G 312 (394)
T 2btz_A 254 SLILPPIKVMVALGEE---------------------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAG 312 (394)
T ss_dssp CSCCCCEEEEEEECSS---------------------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC-------------
T ss_pred CCCCCCEEEEEEECCC---------------------EEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7889987999980798---------------------7999999679997979998985635667898776667798787
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEEECCC
Q ss_conf 653399999999981999999843899846999999830499
Q 006513 573 DRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 573 ~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
+||||+|||.+++.|||+|++.|. +|.|++|++.||.....
T Consensus 313 ~GLGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~~ 353 (394)
T 2btz_A 313 FGYGLPISRLYAKYFQGDLQLFSM-EGFGTDAVIYLKALSTD 353 (394)
T ss_dssp -CCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSTTT
T ss_pred CCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCCC
T ss_conf 447899999999995997899962-79856999996389877
No 6
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=1.00 E-value=1 Score=256.89 Aligned_cols=218 Identities=9% Similarity=0.078 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHC-----HHHHHHHHHHHHHCCCC----CHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCC----C
Q ss_conf 99999999731001-----07999999998821699----9789999999--99999999999999984154458----9
Q 006513 370 RNAFQKVMSNGMRR-----PMHSILGLLSIMQDVNL----NSDQRMIVET--MMKSSNVLSTLISDVMDNSPKDS----G 434 (642)
Q Consensus 370 ~~~ll~~isHelrt-----PL~~I~g~~~lL~~~~~----~~~~~~~l~~--i~~~~~~l~~li~~ll~~sr~e~----g 434 (642)
...|.+.+ ||||| ||+.|.|+++++..... .++.+++++. +.+.+.++ ++++++++++.+. +
T Consensus 106 ~~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~ 182 (407)
T 2q8g_A 106 IYDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPS 182 (407)
T ss_dssp HHHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------
T ss_pred HHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCC
T ss_conf 99999999-999864110259999999999876356866789999999999999999999--999999984543356788
Q ss_pred ---CCCCEEEEEEHHHHHHHHHHHHHHHHHHC-----CCEEEEEE---CCCCCCEEEECHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ---86520144319999999999999898633-----97599986---89999808824989999999999976033699
Q 006513 435 ---RFPLEIRSFRLHAMIKEAACLARCLSIYR-----GFGFSIEV---DRSLPDHVMGDERRVFQVILHMVGSLLNCNSR 503 (642)
Q Consensus 435 ---~~~l~~~~~~L~~li~~~~~~~~~~~~~~-----~i~l~~~i---~~~lp~~v~~D~~~l~qVl~NLi~NAik~~~~ 503 (642)
.......++++.+++++++..++..+..+ ++.+.+++ +.. +..+.+|+.++.||+.||++||+||++.
T Consensus 183 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~v~~d~~~L~~il~NLl~NAik~t~~ 261 (407)
T 2q8g_A 183 HRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQ-PIQVVYVPSHLYHMVFELFKNAMRATME 261 (407)
T ss_dssp --CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS-CCEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 846225445778899999999999999999851789956999963478898-7279975999999999999999998761
Q ss_pred CC-------EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCC--------
Q ss_conf 98-------799999971598775652110123567899529999998879999920132102365235579--------
Q 006513 504 RG-------TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN-------- 568 (642)
Q Consensus 504 ~g-------~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~e~~~~if~~f~~~~~~-------- 568 (642)
++ .|.|.+...++ .+.|.|+|+|+||+++.++++|++|++....
T Consensus 262 ~~~~~~~~~~I~I~~~~~~~---------------------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~ 320 (407)
T 2q8g_A 262 HHANRGVYPPIQVHVTLGNE---------------------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRA 320 (407)
T ss_dssp HSTTTCCCCCEEEEEEECSS---------------------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSC
T ss_pred CCCCCCCCCCEEEEEEECCC---------------------EEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 15667889977999996898---------------------799999966898897999988475550788877666677
Q ss_pred -CCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEEECC
Q ss_conf -999865339999999998199999984389984699999983049
Q 006513 569 -EGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 569 -~~~g~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
...|+||||+|||.+++.|||+|++.|. +|.|++|+++||....
T Consensus 321 ~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~ 365 (407)
T 2q8g_A 321 VPLAGFGYGLPISRLYAQYFQGDLKLYSL-EGYGTDAVIYIKALST 365 (407)
T ss_dssp CCSSCTTCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSGG
T ss_pred CCCCCCCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCC
T ss_conf 98787077889999999982997999974-8985699999778998
No 7
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=1.00 E-value=1 Score=254.57 Aligned_cols=218 Identities=11% Similarity=0.085 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHC-----HHHHHHHHHHHHHCCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HCCCCCCCCCCE
Q ss_conf 999999731001-----0799999999882169----9978999999--999999999999999984-154458986520
Q 006513 372 AFQKVMSNGMRR-----PMHSILGLLSIMQDVN----LNSDQRMIVE--TMMKSSNVLSTLISDVMD-NSPKDSGRFPLE 439 (642)
Q Consensus 372 ~ll~~isHelrt-----PL~~I~g~~~lL~~~~----~~~~~~~~l~--~i~~~~~~l~~li~~ll~-~sr~e~g~~~l~ 439 (642)
.++..++||||| ||+.|.|+++++.... ..++.+++++ .|.+.+.++ +++++++ +++. .+..+..
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCC-CCCCCCC
T ss_conf 9999999999863100078999999999866435755689999999999999899999--999999986144-6788873
Q ss_pred E----EEEEHHHHHHHHHHHHHHHHHHC-----CCEEEEEE--CCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCC---
Q ss_conf 1----44319999999999999898633-----97599986--8999980882498999999999997603369998---
Q 006513 440 I----RSFRLHAMIKEAACLARCLSIYR-----GFGFSIEV--DRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG--- 505 (642)
Q Consensus 440 ~----~~~~L~~li~~~~~~~~~~~~~~-----~i~l~~~i--~~~lp~~v~~D~~~l~qVl~NLi~NAik~~~~~g--- 505 (642)
. +++++.+++++++..++..+..+ ++.+.+++ .+..+..+.+|+.++.||+.||+.||+||++.++
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 253 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQ 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 03015777799999999999999999851899966999722577898727997489999999999999999987315666
Q ss_pred ----EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCC---------CCCC
Q ss_conf ----799999971598775652110123567899529999998879999920132102365235579---------9998
Q 006513 506 ----TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN---------EGIE 572 (642)
Q Consensus 506 ----~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~e~~~~if~~f~~~~~~---------~~~g 572 (642)
.|.|.+...++ .+.|.|+|+|+||+++.++++|++|+++... ...|
T Consensus 254 ~~~~~I~I~~~~~~~---------------------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G 312 (394)
T 2e0a_A 254 PSLTPIEVIVVLGKE---------------------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAG 312 (394)
T ss_dssp SSCCCEEEEEEECSS---------------------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSC
T ss_pred CCCCCEEEEEEECCC---------------------EEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 889987999995798---------------------79999996799959789878757676278987767677789787
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEEECCC
Q ss_conf 653399999999981999999843899846999999830499
Q 006513 573 DRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLRP 614 (642)
Q Consensus 573 ~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~~ 614 (642)
+||||+|||.+++.|||+|++.|. +|.|++|++.||.....
T Consensus 313 ~GLGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~~ 353 (394)
T 2e0a_A 313 FGYGLPISRLYAKYFQGDLNLYSL-SGYGTDAIIYLKALSSE 353 (394)
T ss_dssp SSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSGGG
T ss_pred CCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCCC
T ss_conf 226899999999994997999954-89637999996799987
No 8
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=250.73 Aligned_cols=216 Identities=16% Similarity=0.244 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHH
Q ss_conf 99999999997310010799999999882169-99789999999999999999999999841544589865201443199
Q 006513 368 QARNAFQKVMSNGMRRPMHSILGLLSIMQDVN-LNSDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRLH 446 (642)
Q Consensus 368 ~~~~~ll~~isHelrtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~g~~~l~~~~~~L~ 446 (642)
+.++.|++.++||+||||++|.++++++.+.. .+++.+++++.+.+.++++..++++++++++. ...+...++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCHH
T ss_conf 99999998878876464999999999998630691899999999999999999999999998377---555677425799
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCC
Q ss_conf 99999999999898633975999868999980882498999999999997603369998799999971598775652110
Q 006513 447 AMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKWA 526 (642)
Q Consensus 447 ~li~~~~~~~~~~~~~~~i~l~~~i~~~lp~~v~~D~~~l~qVl~NLi~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~~ 526 (642)
+++++++..+...+..+++.+.++.+++.+ .+.+|+..+.||+.||+.||+||++++|.|.|++...++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~~--------- 276 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTK--------- 276 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSCC-EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTE---------
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCC-EEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCE---------
T ss_conf 999999999999999769689995488884-5986899999999999999998655797799999955988---------
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEEEECCCCCCEEEE
Q ss_conf 12356789952999999887999992013210236523557999986533999999999-81999999843899846999
Q 006513 527 TWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQ-LMQGNIWMVPSSHGFAQSMG 605 (642)
Q Consensus 527 ~~~~~~~~~~~~i~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~g~GLGL~i~k~iv~-~~gG~I~v~s~~~g~Gt~f~ 605 (642)
+.++|+|+|+|||++..+++|++|+++. ..|+|+||++||++++ .|||.+++++. .+ |++|+
T Consensus 277 ------------~~i~v~D~G~Gi~~~~~~~if~~f~~~~---~~g~GlGL~i~~~~v~~~~gg~i~~~~~-~~-Gt~f~ 339 (349)
T 3a0r_A 277 ------------VRVSVWNSGPPIPEELKEKIFSPFFTTK---TQGTGLGLSICRKIIEDEHGGKIWTENR-EN-GVVFI 339 (349)
T ss_dssp ------------EEEEEEEESCCCCGGGGTTTSSSCCCC---------CCCTHHHHHHHHTTCSBCCEEEC-SS-EEEEE
T ss_pred ------------EEEEEEECCCCCCHHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHCCCEEEEEEC-CC-CEEEE
T ss_conf ------------9999998999979679955388873079---9983110999999999718977999807-99-47999
Q ss_pred EEEEEECC
Q ss_conf 99983049
Q 006513 606 LVLRFQLR 613 (642)
Q Consensus 606 i~LP~~~~ 613 (642)
+.||....
T Consensus 340 i~lP~~~~ 347 (349)
T 3a0r_A 340 FEIPKTPE 347 (349)
T ss_dssp EEEESCTT
T ss_pred EEECCCCC
T ss_conf 99328977
No 9
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=1.00 E-value=1 Score=249.52 Aligned_cols=217 Identities=10% Similarity=0.066 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHCHHH-----HHHHHHHHHHCCCC----CHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCC-CCCCCCC
Q ss_conf 9999999731001079-----99999998821699----97899999999999--99999999999841544-5898652
Q 006513 371 NAFQKVMSNGMRRPMH-----SILGLLSIMQDVNL----NSDQRMIVETMMKS--SNVLSTLISDVMDNSPK-DSGRFPL 438 (642)
Q Consensus 371 ~~ll~~isHelrtPL~-----~I~g~~~lL~~~~~----~~~~~~~l~~i~~~--~~~l~~li~~ll~~sr~-e~g~~~l 438 (642)
.+|. .++|||||||+ .|.|+++++..... .++.+++++.+... +.++ ++++++...+. +.+..+.
T Consensus 119 ~~f~-~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~ 195 (419)
T 1y8o_A 119 DNFL-QVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPK 195 (419)
T ss_dssp HHHH-HHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTT
T ss_pred HHHH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCC
T ss_conf 9999-999998541166699999999999987466866689999999999998888999--9999999860224677877
Q ss_pred ----EEEEEEHHHHHHHHHHHHHHHHHH-----CCCEEEEEE---CCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCC-
Q ss_conf ----014431999999999999989863-----397599986---8999980882498999999999997603369998-
Q 006513 439 ----EIRSFRLHAMIKEAACLARCLSIY-----RGFGFSIEV---DRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRG- 505 (642)
Q Consensus 439 ----~~~~~~L~~li~~~~~~~~~~~~~-----~~i~l~~~i---~~~lp~~v~~D~~~l~qVl~NLi~NAik~~~~~g- 505 (642)
..+++++.+++++++..++..+.. +++.+.+.. ++. +..+.+|+.++.||+.||++||+||++.++
T Consensus 196 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 196 HIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDK-PIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS-CCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 545226768899999999999999999850889967999630477899-8489973999999999999999999875135
Q ss_pred -------EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCC---------C
Q ss_conf -------799999971598775652110123567899529999998879999920132102365235579---------9
Q 006513 506 -------TVLFRVVSENGSQDRNDKKWATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVN---------E 569 (642)
Q Consensus 506 -------~I~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~e~~~~if~~f~~~~~~---------~ 569 (642)
.|.|.+...++ .+.|.|+|+|+|||++.++++|++|+++... .
T Consensus 275 ~~~~~~~~I~I~~~~~~~---------------------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~ 333 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLGKE---------------------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAP 333 (419)
T ss_dssp TCSSCCCCEEEEEEECSS---------------------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------C
T ss_pred CCCCCCCCEEEEEEECCC---------------------EEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 667789978999995798---------------------79999997999979899998837334168887766667788
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEEECC
Q ss_conf 99865339999999998199999984389984699999983049
Q 006513 570 GIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMGLVLRFQLR 613 (642)
Q Consensus 570 ~~g~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~i~LP~~~~ 613 (642)
..|+||||+|||.+++.|||+|+++|. +|.|++|++.||....
T Consensus 334 ~~G~GLGL~I~k~iv~~~gG~I~v~s~-~g~Gt~f~i~LP~~~~ 376 (419)
T 1y8o_A 334 LAGFGYGLPISRLYARYFQGDLKLYSM-EGVGTDAVIYLKALSS 376 (419)
T ss_dssp C--CTTHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESCGG
T ss_pred CCCEECCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCC
T ss_conf 687405899999999996997999964-8997799999658887
No 10
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=1.00 E-value=1 Score=243.81 Aligned_cols=221 Identities=14% Similarity=0.223 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEH
Q ss_conf 99999999999731001079999999988216999-78999999999999999999999984154458986520144319
Q 006513 367 SQARNAFQKVMSNGMRRPMHSILGLLSIMQDVNLN-SDQRMIVETMMKSSNVLSTLISDVMDNSPKDSGRFPLEIRSFRL 445 (642)
Q Consensus 367 ~~~~~~ll~~isHelrtPL~~I~g~~~lL~~~~~~-~~~~~~l~~i~~~~~~l~~li~~ll~~sr~e~g~~~l~~~~~~L 445 (642)
.+.++.|++.++||+||||++|.++++++.+...+ ++.+++++.+.+..+++..++++++++++.+.+ ...++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHH
T ss_conf 999999999866975467999999999987063580679999999999999999999999998731568----8631257
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCC
Q ss_conf 99999999999989863397599986899998088249899999999999760336999879999997159877565211
Q 006513 446 HAMIKEAACLARCLSIYRGFGFSIEVDRSLPDHVMGDERRVFQVILHMVGSLLNCNSRRGTVLFRVVSENGSQDRNDKKW 525 (642)
Q Consensus 446 ~~li~~~~~~~~~~~~~~~i~l~~~i~~~lp~~v~~D~~~l~qVl~NLi~NAik~~~~~g~I~i~v~~~~~~~~~~~~~~ 525 (642)
..++++++..+...+..+++.+.++.++ ..+.+|+..+.+++.||+.||+||++.++.|.|.+...++.
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~~-------- 155 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGR-------- 155 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTE--------
T ss_pred HHHHHHHHHHHHHHHHHCCEEEECCCCC---CEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCE--------
T ss_conf 9999999999999987427287236887---36896799999999999999999646798189999985998--------
Q ss_pred CCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEE
Q ss_conf 01235678995299999988799999201321023652355799998653399999999981999999843899846999
Q 006513 526 ATWRQSSVDGDVHIRFEILLNEVGSQPEVSTSVAQLGIRRIVNEGIEDRMSFSVCKKLVQLMQGNIWMVPSSHGFAQSMG 605 (642)
Q Consensus 526 ~~~~~~~~~~~~~i~i~V~D~G~Gi~~e~~~~if~~f~~~~~~~~~g~GLGL~i~k~iv~~~gG~I~v~s~~~g~Gt~f~ 605 (642)
+.+.|+|+|+|++++..+++|++|+++.. ..|.|+||++|+.+++.|||+|++.+. +++|++|+
T Consensus 156 -------------~~i~i~D~G~gi~~~~~~~if~~~~~~~~--~~g~GlGL~i~~~i~~~~gG~i~~~~~-~~~G~~~~ 219 (244)
T 3d36_A 156 -------------VLIRIADTGVGMTKEQLERLGEPYFTTKG--VKGTGLGMMVVYRIIESMNGTIRIESE-IHKGTTVS 219 (244)
T ss_dssp -------------EEEEEEECSSCCCHHHHHHTTSTTCCSSG--GGCCSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEE
T ss_pred -------------EEEEEEECCCCCCHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCCEEEE
T ss_conf -------------99999725899798999988563302789--887652599999999985998999966-99917999
Q ss_pred EEEEEECCCCCCC
Q ss_conf 9998304999999
Q 006513 606 LVLRFQLRPSXXX 618 (642)
Q Consensus 606 i~LP~~~~~~~~~ 618 (642)
+.||+...++.+.
T Consensus 220 i~lP~~~~~~~~~ 232 (244)
T 3d36_A 220 IYLPLASSPSSST 232 (244)
T ss_dssp EEEECCC------
T ss_pred EEECCCCCCCCCC
T ss_conf 9951899987333
Done!