Query 006514
Match_columns 642
No_of_seqs 448 out of 4188
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 18:58:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006514.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2140-2144//hhsearch_pdb/006514hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 397.9 18.4 260 313-596 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 392.3 15.8 257 313-593 13-287 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 391.8 17.4 258 313-594 26-305 (308)
4 4b9d_A Serine/threonine-protei 1.0 1 1 384.2 14.0 251 313-589 24-277 (350)
5 4fih_A Serine/threonine-protei 1.0 1 1 383.9 18.0 250 313-589 74-324 (346)
6 4fie_A Serine/threonine-protei 1.0 1 1 383.7 18.6 250 313-589 151-401 (423)
7 4g3f_A NF-kappa-beta-inducing 1.0 1 1 380.7 14.6 265 312-606 57-327 (336)
8 3omv_A RAF proto-oncogene seri 1.0 1 1 380.2 22.8 262 312-597 35-303 (307)
9 3hmm_A TGF-beta receptor type- 1.0 1 1 377.2 14.2 267 313-593 3-295 (303)
10 4ase_A Vascular endothelial gr 1.0 1 1 377.1 19.0 268 303-593 54-345 (353)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=397.90 Aligned_cols=260 Identities=25% Similarity=0.414 Sum_probs=213.6
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEE
Q ss_conf 89632351266671689997818------996899998204475659999999999830885613101101114897328
Q 006514 313 GSFDEANKLGQGGFGTVYKGVLP------DGREIAVKRLFFNNRHRAANFYNEVNIISSVEHKNLVRLLGCSCSGPESLL 386 (642)
Q Consensus 313 ~~~~~~~~LG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 386 (642)
.++...++||+|+||.||+|.+. +++.||||++...+....+.|.+|+.++++++|||||+++|++.+....++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHHCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCE
Q ss_conf 995069998024531024------------66899999999999999999999983799974980368898897699939
Q 006514 387 VYEFLPNQSLDRFIFDSA------------KAKTLTWEKRYEIILGTVEGLVYLHEQSKIRIIHRDIKASNILLDSRLRA 454 (642)
Q Consensus 387 v~e~~~~gsL~~~l~~~~------------~~~~l~~~~~~~i~~~i~~al~yLH~~~~~~iiH~Dlkp~NILi~~~~~~ 454 (642)
||||+++|+|.++++... ....++|.+++.|+.|++.||.|||+++ |+||||||+||||+.++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEEECCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9973278502378997-31015567754247422224998973117889999999994-998999999845640478999
Q 006514 455 KIADFGLARSFQEDKS-HISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGMLLLEIVT-GRQNNRSKNSEYTDSLLTITW 532 (642)
Q Consensus 455 ki~Dfgl~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~s~~sDi~SlGvil~ellt-g~~p~~~~~~~~~~~l~~~~~ 532 (642)
||+|||+++....... .......||+.|||||++.+..++.++|||||||+||||+| |+.||...... ...
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~---~~~---- 270 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT---EAI---- 270 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH---HHH----
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH---HHH----
T ss_conf 9766603336567875300476455656658265447999966300105789999982899999998999---999----
Q ss_pred HHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 8630386012213222234469987099999999999973255999999999999986259999
Q 006514 533 KHFQAGRVEELYDKNLMLHNYHDSNVKYEVLRAIHVGLLCTQENPSLRPTMSRVLQMLTTEEQL 596 (642)
Q Consensus 533 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 596 (642)
.....+.... .+.... ..+.+++.+||+.||++||||.||+++|+...+.
T Consensus 271 ~~i~~g~~~~-----------~p~~~~---~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 271 DCITQGRELE-----------RPRACP---PEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp HHHHHTCCCC-----------CCTTCC---HHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HHHHCCCCCC-----------CCCCCC---HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 9998089899-----------864463---9999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=392.34 Aligned_cols=257 Identities=25% Similarity=0.442 Sum_probs=211.8
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEE
Q ss_conf 89632351266671689997818------996899998204475659999999999830885613101101114897328
Q 006514 313 GSFDEANKLGQGGFGTVYKGVLP------DGREIAVKRLFFNNRHRAANFYNEVNIISSVEHKNLVRLLGCSCSGPESLL 386 (642)
Q Consensus 313 ~~~~~~~~LG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 386 (642)
++|.+.++||+|+||.||+|.+. ++..||||++........++|.+|++++++++|||||+++|++.+.+..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCEEE
Q ss_conf 995069998024531024----------6689999999999999999999998379997498036889889769993999
Q 006514 387 VYEFLPNQSLDRFIFDSA----------KAKTLTWEKRYEIILGTVEGLVYLHEQSKIRIIHRDIKASNILLDSRLRAKI 456 (642)
Q Consensus 387 v~e~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~i~~al~yLH~~~~~~iiH~Dlkp~NILi~~~~~~ki 456 (642)
||||+++|+|.++|+... ....++|.+++.++.|++.||.|||+++ |+||||||+|||++.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred EECCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 732785023789973-1015567754247422224998973117889999999994-99899999984564047899986
Q 006514 457 ADFGLARSFQEDKSH-ISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGMLLLEIVT-GRQNNRSKNSEYTDSLLTITWKH 534 (642)
Q Consensus 457 ~Dfgl~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~s~~sDi~SlGvil~ellt-g~~p~~~~~~~~~~~l~~~~~~~ 534 (642)
+|||+++........ ......||+.|||||++.++.|+.++|||||||++|||+| |+.||...... .+. ..
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~---~~~----~~ 242 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN---EVI----EC 242 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH---HHH----HH
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH---HHH----HH
T ss_conf 87300100678874166475134701038898707999703667788999999980899999998999---999----99
Q ss_pred HHCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 30386012213222234469987099999999999973255999999999999986259
Q 006514 535 FQAGRVEELYDKNLMLHNYHDSNVKYEVLRAIHVGLLCTQENPSLRPTMSRVLQMLTTE 593 (642)
Q Consensus 535 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~evl~~L~~~ 593 (642)
...+.... . +.... ..+.+++.+||+.||++||||.+|++.|+..
T Consensus 243 i~~~~~~~----------~-p~~~~---~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~ 287 (299)
T 4asz_A 243 ITQGRVLQ----------R-PRTCP---QEVYELMLGCWQREPHMRKNIKGIHTLLQNL 287 (299)
T ss_dssp HHHTCCCC----------C-CTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHCCCCCC----------C-CCCCH---HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 98089889----------9-74143---9999999997687966892999999999877
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=391.82 Aligned_cols=258 Identities=22% Similarity=0.380 Sum_probs=208.2
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEEEECC-CHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCE
Q ss_conf 89632351266671689997818------9968999982044-7565999999999983088561310110111489732
Q 006514 313 GSFDEANKLGQGGFGTVYKGVLP------DGREIAVKRLFFN-NRHRAANFYNEVNIISSVEHKNLVRLLGCSCSGPESL 385 (642)
Q Consensus 313 ~~~~~~~~LG~G~~g~Vy~~~~~------~g~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 385 (642)
.++...++||+|+||.||+|.+. +++.||||++... .....+.|.+|+.++++++|||||+++|++.+....+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 88858669135888489999985776588886999999880149689999999999998589989877364998899889
Q ss_pred EEEEECCCCCHHHHHHCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCC
Q ss_conf 8995069998024531024-------------668999999999999999999999837999749803688988976999
Q 006514 386 LVYEFLPNQSLDRFIFDSA-------------KAKTLTWEKRYEIILGTVEGLVYLHEQSKIRIIHRDIKASNILLDSRL 452 (642)
Q Consensus 386 lv~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~al~yLH~~~~~~iiH~Dlkp~NILi~~~~ 452 (642)
+||||+++|+|.++|.... ....++|..++.|+.||+.||.|||+++ |+||||||+||||++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCC
T ss_conf 999818999499999862765433332211112468999999999999999999998689---97787362306887999
Q ss_pred CEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHH
Q ss_conf 399973278502378997-31015567754247422224998973117889999999994-9989999998456404789
Q 006514 453 RAKIADFGLARSFQEDKS-HISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGMLLLEIVT-GRQNNRSKNSEYTDSLLTI 530 (642)
Q Consensus 453 ~~ki~Dfgl~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~s~~sDi~SlGvil~ellt-g~~p~~~~~~~~~~~l~~~ 530 (642)
.+||+|||+++....... .......||+.|||||++.++.|+.++|||||||+||||+| |+.||...... .+.
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~---~~~-- 257 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ---DVV-- 257 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH---HHH--
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH---HHH--
T ss_conf 789887602023367774047345125776569899827999963000157999999996899999998999---999--
Q ss_pred HHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 9986303860122132222344699870999999999999732559999999999999862599
Q 006514 531 TWKHFQAGRVEELYDKNLMLHNYHDSNVKYEVLRAIHVGLLCTQENPSLRPTMSRVLQMLTTEE 594 (642)
Q Consensus 531 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 594 (642)
.....+.... . +... ...+.+++.+||+.||++||||.||+++|+...
T Consensus 258 --~~i~~~~~~~----------~-p~~~---~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 258 --EMIRNRQVLP----------C-PDDC---PAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp --HHHHTTCCCC----------C-CTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred --HHHHCCCCCC----------C-CCCC---HHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf --9998199899----------9-6203---699999999975879657929999999998531
No 4
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=384.24 Aligned_cols=251 Identities=21% Similarity=0.351 Sum_probs=206.6
Q ss_pred CCCCCCCCCCCCCCEEEEEEEC-CCCCEEEEEEEECC--CHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf 8963235126667168999781-89968999982044--75659999999999830885613101101114897328995
Q 006514 313 GSFDEANKLGQGGFGTVYKGVL-PDGREIAVKRLFFN--NRHRAANFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYE 389 (642)
Q Consensus 313 ~~~~~~~~LG~G~~g~Vy~~~~-~~g~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 389 (642)
++|++.++||+|+||.||++.. .+|+.||||++... .....+.+.+|+.++++++|||||++++++.+....++|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 06999802453102466899999999999999999999983799974980368898897699939997327850237899
Q 006514 390 FLPNQSLDRFIFDSAKAKTLTWEKRYEIILGTVEGLVYLHEQSKIRIIHRDIKASNILLDSRLRAKIADFGLARSFQEDK 469 (642)
Q Consensus 390 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~al~yLH~~~~~~iiH~Dlkp~NILi~~~~~~ki~Dfgl~~~~~~~~ 469 (642)
|+++|+|.+++... +...+++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++......
T Consensus 104 y~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 88998399999973-8999978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf 73101556775424742222499897311788999999999499899999984564047899986303860122132222
Q 006514 470 SHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGMLLLEIVTGRQNNRSKNSEYTDSLLTITWKHFQAGRVEELYDKNLM 549 (642)
Q Consensus 470 ~~~~~~~~gt~~y~aPE~~~~~~~s~~sDi~SlGvil~elltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~ 549 (642)
...+..+||+.|||||++.+..|+.++|||||||++|||++|+.||...... ....... .+....
T Consensus 180 -~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~------~~~~~i~-~~~~~~------- 244 (350)
T 4b9d_A 180 -ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK------NLVLKII-SGSFPP------- 244 (350)
T ss_dssp -HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH------HHHHHHH-HTCCCC-------
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH------HHHHHHH-CCCCCC-------
T ss_conf -4101457883603999987999895999999999999999787998996999------9999998-089999-------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 3446998709999999999997325599999999999998
Q 006514 550 LHNYHDSNVKYEVLRAIHVGLLCTQENPSLRPTMSRVLQM 589 (642)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~evl~~ 589 (642)
. ..... ..+.+++.+||+.||++|||+.|+++|
T Consensus 245 ---~-~~~~s---~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 245 ---V-SLHYS---YDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp ---C-CTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred ---C-CCCCC---HHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf ---9-75579---999999999855896679089999639
No 5
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=383.87 Aligned_cols=250 Identities=25% Similarity=0.391 Sum_probs=206.3
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEC
Q ss_conf 89632351266671689997818-99689999820447565999999999983088561310110111489732899506
Q 006514 313 GSFDEANKLGQGGFGTVYKGVLP-DGREIAVKRLFFNNRHRAANFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFL 391 (642)
Q Consensus 313 ~~~~~~~~LG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 391 (642)
..|+..++||+|+||.||++..+ +|+.||||++........+.+.+|+.+++.++|||||++++++.+.+..++||||+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 99980245310246689999999999999999999998379997498036889889769993999732785023789973
Q 006514 392 PNQSLDRFIFDSAKAKTLTWEKRYEIILGTVEGLVYLHEQSKIRIIHRDIKASNILLDSRLRAKIADFGLARSFQEDKSH 471 (642)
Q Consensus 392 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~al~yLH~~~~~~iiH~Dlkp~NILi~~~~~~ki~Dfgl~~~~~~~~~~ 471 (642)
++|+|.+++.. ..+++..+..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.......
T Consensus 154 ~gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~- 225 (346)
T 4fih_A 154 EGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 225 (346)
T ss_dssp TTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-
T ss_pred CCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 99808999871----89899999999999999999999888---35562788997887999889902757536678877-
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCC
Q ss_conf 10155677542474222249989731178899999999949989999998456404789998630386012213222234
Q 006514 472 ISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGMLLLEIVTGRQNNRSKNSEYTDSLLTITWKHFQAGRVEELYDKNLMLH 551 (642)
Q Consensus 472 ~~~~~~gt~~y~aPE~~~~~~~s~~sDi~SlGvil~elltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~ 551 (642)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||....... .. ........ +.
T Consensus 226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~---~~----~~i~~~~~-----~~---- 289 (346)
T 4fih_A 226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK---AM----KMIRDNLP-----PR---- 289 (346)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HH----HHHHHSSC-----CC----
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH---HH----HHHHCCCC-----CC----
T ss_conf 5346562758279999779999968999999999999997879989859999---99----99971799-----98----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 46998709999999999997325599999999999998
Q 006514 552 NYHDSNVKYEVLRAIHVGLLCTQENPSLRPTMSRVLQM 589 (642)
Q Consensus 552 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~evl~~ 589 (642)
..........+.+++.+||+.||++|||+.|+++|
T Consensus 290 ---~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 290 ---LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp ---CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ---CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf ---87502299999999999867995689099999609
No 6
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=383.65 Aligned_cols=250 Identities=26% Similarity=0.399 Sum_probs=206.5
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEC
Q ss_conf 89632351266671689997818-99689999820447565999999999983088561310110111489732899506
Q 006514 313 GSFDEANKLGQGGFGTVYKGVLP-DGREIAVKRLFFNNRHRAANFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFL 391 (642)
Q Consensus 313 ~~~~~~~~LG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 391 (642)
..|+..++||+|+||.||++... +|+.||||++........+.+.+|+.+++.++|||||++++++.+.+..+|||||+
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 99980245310246689999999999999999999998379997498036889889769993999732785023789973
Q 006514 392 PNQSLDRFIFDSAKAKTLTWEKRYEIILGTVEGLVYLHEQSKIRIIHRDIKASNILLDSRLRAKIADFGLARSFQEDKSH 471 (642)
Q Consensus 392 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~al~yLH~~~~~~iiH~Dlkp~NILi~~~~~~ki~Dfgl~~~~~~~~~~ 471 (642)
++|+|.+++. ...+++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.......
T Consensus 231 ~gG~L~~~i~----~~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~- 302 (423)
T 4fie_A 231 EGGALTDIVT----HTRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 302 (423)
T ss_dssp TTEEHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-
T ss_pred CCCCHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 9982898876----169899999999999999999999889---04465787778985899989803726547778876-
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCC
Q ss_conf 10155677542474222249989731178899999999949989999998456404789998630386012213222234
Q 006514 472 ISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGMLLLEIVTGRQNNRSKNSEYTDSLLTITWKHFQAGRVEELYDKNLMLH 551 (642)
Q Consensus 472 ~~~~~~gt~~y~aPE~~~~~~~s~~sDi~SlGvil~elltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~ 551 (642)
.....+||+.|||||++.+..|+.++|||||||++|||++|+.||....... .. ........ +.+.
T Consensus 303 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~---~~----~~i~~~~~-----~~~~-- 368 (423)
T 4fie_A 303 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK---AM----KMIRDNLP-----PRLK-- 368 (423)
T ss_dssp CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HH----HHHHHSCC-----CCCS--
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH---HH----HHHHCCCC-----CCCC--
T ss_conf 4346664747279999779999968999999999999997879989869999---99----99972799-----8876--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 46998709999999999997325599999999999998
Q 006514 552 NYHDSNVKYEVLRAIHVGLLCTQENPSLRPTMSRVLQM 589 (642)
Q Consensus 552 ~~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~evl~~ 589 (642)
...... ..+.+|+.+||+.||++|||+.|+++|
T Consensus 369 --~~~~~s---~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 369 --NLHKVS---PSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp --CTTSSC---HHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred --CCCCCC---HHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf --501299---999999999867895689099999609
No 7
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=380.67 Aligned_cols=265 Identities=24% Similarity=0.286 Sum_probs=209.6
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf 089632351266671689997818-9968999982044756599999999998308856131011011148973289950
Q 006514 312 TGSFDEANKLGQGGFGTVYKGVLP-DGREIAVKRLFFNNRHRAANFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEF 390 (642)
Q Consensus 312 ~~~~~~~~~LG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 390 (642)
.+.|...++||+|+||.||++.++ +|+.||||++..... ..+|+.+++.++|||||++++++.+....++||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCC-CEEEEECCCCCCCCCCC
Q ss_conf 69998024531024668999999999999999999999837999749803688988976999-39997327850237899
Q 006514 391 LPNQSLDRFIFDSAKAKTLTWEKRYEIILGTVEGLVYLHEQSKIRIIHRDIKASNILLDSRL-RAKIADFGLARSFQEDK 469 (642)
Q Consensus 391 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~al~yLH~~~~~~iiH~Dlkp~NILi~~~~-~~ki~Dfgl~~~~~~~~ 469 (642)
+++|+|.+++.. .+.+++..+..++.|++.||.|||+++ |+||||||+|||++.++ ++||+|||+++......
T Consensus 132 ~~gg~L~~~l~~---~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQ---MGCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 599869999987---699999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CC----CCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCC
Q ss_conf 73----10155677542474222249989731178899999999949989999998456404789998630386012213
Q 006514 470 SH----ISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGMLLLEIVTGRQNNRSKNSEYTDSLLTITWKHFQAGRVEELYD 545 (642)
Q Consensus 470 ~~----~~~~~~gt~~y~aPE~~~~~~~s~~sDi~SlGvil~elltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d 545 (642)
.. .....+||+.|||||++.+..|+.++|||||||++|||++|+.||......... ..+. .. ...
T Consensus 206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~--~~i~----~~-~~~---- 274 (336)
T 4g3f_A 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLC--LKIA----SE-PPP---- 274 (336)
T ss_dssp --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCH--HHHH----HS-CCG----
T ss_pred CCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH--HHHH----CC-CCC----
T ss_conf 654022178545580200899988999890899999999999999786998998999999--9998----08-998----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 2222344699870999999999999732559999999999999862599999999998423
Q 006514 546 KNLMLHNYHDSNVKYEVLRAIHVGLLCTQENPSLRPTMSRVLQMLTTEEQLPGPTSPPFID 606 (642)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~p~~p~~~~ 606 (642)
.... ..... ..+.+++.+||+.||++|||+.|++++|....+......+||+.
T Consensus 275 ----~~~~-~~~~s---~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~ 327 (336)
T 4g3f_A 275 ----IREI-PPSCA---PLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKG 327 (336)
T ss_dssp ----GGGS-CTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSS
T ss_pred ----CHHC-CCCCC---HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf ----0025-86679---99999999976289768959999999999997544321698767
No 8
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=380.24 Aligned_cols=262 Identities=27% Similarity=0.423 Sum_probs=205.4
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECC--CHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf 0896323512666716899978189968999982044--75659999999999830885613101101114897328995
Q 006514 312 TGSFDEANKLGQGGFGTVYKGVLPDGREIAVKRLFFN--NRHRAANFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYE 389 (642)
Q Consensus 312 ~~~~~~~~~LG~G~~g~Vy~~~~~~g~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 389 (642)
.+++...++||+|+||.||+|.++ ..||||.+... .....+.|.+|+.++++++|||||+++|++.+ +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEE
T ss_conf 799498449820888689999989--968999997268999999999999999985899887469999978-95899997
Q ss_pred ECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 06999802453102466899999999999999999999983799974980368898897699939997327850237899
Q 006514 390 FLPNQSLDRFIFDSAKAKTLTWEKRYEIILGTVEGLVYLHEQSKIRIIHRDIKASNILLDSRLRAKIADFGLARSFQEDK 469 (642)
Q Consensus 390 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~al~yLH~~~~~~iiH~Dlkp~NILi~~~~~~ki~Dfgl~~~~~~~~ 469 (642)
|+++|+|.++++. ....++|.+++.|+.|++.||.|||+++ |+||||||+|||+++++.+||+|||+++......
T Consensus 112 y~~gGsL~~~l~~--~~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~ 186 (307)
T 3omv_A 112 WCEGSSLYKHLHV--QETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp CCSSCBHHHHHHT--SCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC-----
T ss_pred CCCCCCHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCC
T ss_conf 4899878898752--4899999999999999999999997799---5278557899788899908994415754246677
Q ss_pred C-CCCCCCCCCCCCCCHHHHCC---CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCC
Q ss_conf 7-31015567754247422224---9989731178899999999949989999998456404789998630386012213
Q 006514 470 S-HISTAIAGTLGYMAPEYLAH---GQLTEKADVYSFGMLLLEIVTGRQNNRSKNSEYTDSLLTITWKHFQAGRVEELYD 545 (642)
Q Consensus 470 ~-~~~~~~~gt~~y~aPE~~~~---~~~s~~sDi~SlGvil~elltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d 545 (642)
. .......||+.|||||++.+ +.|+.++|||||||+||||+||+.||....... .+... ...+. ..
T Consensus 187 ~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~--~~~~~----~~~~~----~~ 256 (307)
T 3omv_A 187 GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD--QIIFM----VGRGY----AS 256 (307)
T ss_dssp -------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH--HHHHH----HHTTC----CC
T ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHH----HHCCC----CC
T ss_conf 6403156446877249878614689987868775728999999997889989999699--99999----96588----88
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC-CCCC
Q ss_conf 222234469987099999999999973255999999999999986259-9999
Q 006514 546 KNLMLHNYHDSNVKYEVLRAIHVGLLCTQENPSLRPTMSRVLQMLTTE-EQLP 597 (642)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~evl~~L~~~-~~~~ 597 (642)
+.+. .. .... ...+.+++.+||+.||++||||.||+++|+.+ .++|
T Consensus 257 p~~~--~~-~~~~---~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 257 PDLS--KL-YKNC---PKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp CCST--TS-CTTS---CHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred CCCC--CC-CCCC---HHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 8720--03-5445---6999999999757797689098999999999745078
No 9
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=377.24 Aligned_cols=267 Identities=24% Similarity=0.298 Sum_probs=199.2
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC----CCEEEE
Q ss_conf 8963235126667168999781899689999820447565999999999983088561310110111489----732899
Q 006514 313 GSFDEANKLGQGGFGTVYKGVLPDGREIAVKRLFFNNRHRAANFYNEVNIISSVEHKNLVRLLGCSCSGP----ESLLVY 388 (642)
Q Consensus 313 ~~~~~~~~LG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~ 388 (642)
.+|.+.++||+|+||.||+|.+ +|+.||||++..... ....+..|+..+.+++||||+++++++.... ..++||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEE-CCEEEEEEEECCCCH-HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 5899978984089939999999-998999999883133-66999999999860899988709999984688723788775
Q ss_pred EECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCEEEECCCCCCEEECCCCCEEEEECCCCC
Q ss_conf 5069998024531024668999999999999999999999837-----99974980368898897699939997327850
Q 006514 389 EFLPNQSLDRFIFDSAKAKTLTWEKRYEIILGTVEGLVYLHEQ-----SKIRIIHRDIKASNILLDSRLRAKIADFGLAR 463 (642)
Q Consensus 389 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~al~yLH~~-----~~~~iiH~Dlkp~NILi~~~~~~ki~Dfgl~~ 463 (642)
||+++|+|.++++. ..++|..+.+++.|++.||.|||++ ..++|+||||||+|||++.++++||+|||+++
T Consensus 81 Ey~~~gsL~~~l~~----~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~ 156 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156 (303)
T ss_dssp ECCTTCBHHHHHHH----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred CCCCCCCHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCC
T ss_conf 17899968999975----79998999999999999999999852400478987624678420899889978998479874
Q ss_pred CCCCCCCC---CCCCCCCCCCCCCHHHHCCC------CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCH--------
Q ss_conf 23789973---10155677542474222249------98973117889999999994998999999845640--------
Q 006514 464 SFQEDKSH---ISTAIAGTLGYMAPEYLAHG------QLTEKADVYSFGMLLLEIVTGRQNNRSKNSEYTDS-------- 526 (642)
Q Consensus 464 ~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~s~~sDi~SlGvil~elltg~~p~~~~~~~~~~~-------- 526 (642)
........ .....+||+.|||||++.+. .++.++|||||||+||||+||++|+..........
T Consensus 157 ~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~ 236 (303)
T 3hmm_A 157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP 236 (303)
T ss_dssp EEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCC
T ss_conf 55677773221046424664626988845654556776570676664799999998789987766522353100254543
Q ss_pred HHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 4789998630386012213222234469987099999999999973255999999999999986259
Q 006514 527 LLTITWKHFQAGRVEELYDKNLMLHNYHDSNVKYEVLRAIHVGLLCTQENPSLRPTMSRVLQMLTTE 593 (642)
Q Consensus 527 l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~evl~~L~~~ 593 (642)
........... +..++.+. ......+....+.+++.+||+.||++||||.||++.|+..
T Consensus 237 ~~~~~~~~~~~----~~~rp~~p----~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l 295 (303)
T 3hmm_A 237 SVEEMRKVVCE----QKLRPNIP----NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 295 (303)
T ss_dssp CHHHHHHHHTT----SCCCCCCC----GGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC----CCCCCCCC----CCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 09999998750----25799887----6556658999999999997605975795999999999988
No 10
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=377.15 Aligned_cols=268 Identities=27% Similarity=0.375 Sum_probs=211.6
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEEEECC-CHHHHHHHHHHHHHHHCCCC-CCEEEE
Q ss_conf 692569987089632351266671689997818------9968999982044-75659999999999830885-613101
Q 006514 303 FKYSTLEKATGSFDEANKLGQGGFGTVYKGVLP------DGREIAVKRLFFN-NRHRAANFYNEVNIISSVEH-KNLVRL 374 (642)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~LG~G~~g~Vy~~~~~------~g~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h-~niv~l 374 (642)
+.....+...++|++.+.||+|+||.||+|.+. .++.||||++... .....+.|.+|+.++.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEECCC-CCCEEEEEECCCCCHHHHHHCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 1011148-973289950699980245310246-------------68999999999999999999999837999749803
Q 006514 375 LGCSCSG-PESLLVYEFLPNQSLDRFIFDSAK-------------AKTLTWEKRYEIILGTVEGLVYLHEQSKIRIIHRD 440 (642)
Q Consensus 375 ~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~al~yLH~~~~~~iiH~D 440 (642)
+|+|.+. ...++||||+++|+|.++|+.... ...+++..++.++.||+.||.|||+++ |+|||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCC
T ss_conf 899994697799999838989799999743566654333410110356899999999999999987676278---43574
Q ss_pred CCCCCEEECCCCCEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCC
Q ss_conf 6889889769993999732785023789973-1015567754247422224998973117889999999994-9989999
Q 006514 441 IKASNILLDSRLRAKIADFGLARSFQEDKSH-ISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGMLLLEIVT-GRQNNRS 518 (642)
Q Consensus 441 lkp~NILi~~~~~~ki~Dfgl~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~s~~sDi~SlGvil~ellt-g~~p~~~ 518 (642)
|||+|||+++++.+||+|||+++........ ......||+.|||||++.+..|+.++|||||||+||||+| |+.||..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 67211305799978979654322245688720325401466656989994699997553740689999998189999999
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 998456404789998630386012213222234469987099999999999973255999999999999986259
Q 006514 519 KNSEYTDSLLTITWKHFQAGRVEELYDKNLMLHNYHDSNVKYEVLRAIHVGLLCTQENPSLRPTMSRVLQMLTTE 593 (642)
Q Consensus 519 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~evl~~L~~~ 593 (642)
..... ........+.... . +.... ..+.+++.+||+.||++|||+.||+++|+..
T Consensus 291 ~~~~~------~~~~~i~~g~~~~---------~--p~~~~---~~~~~li~~c~~~dP~~RPt~~eil~~L~~l 345 (353)
T 4ase_A 291 VKIDE------EFCRRLKEGTRMR---------A--PDYTT---PEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 345 (353)
T ss_dssp CCCSH------HHHHHHHHTCCCC---------C--CTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCHHH------HHHHHHHCCCCCC---------C--CCCCC---HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 89899------9999997389888---------8--86578---9999999997686966793999999999999
Done!