Query 006515
Match_columns 642
No_of_seqs 750 out of 5430
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 00:24:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.5E-40 3.3E-45 396.6 33.4 332 26-373 26-364 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.8E-37 8.2E-42 367.3 28.0 293 79-373 118-412 (968)
3 KOG4194 Membrane glycoprotein 99.9 5.8E-28 1.3E-32 249.1 3.9 287 77-364 123-438 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.6E-27 3.5E-32 245.8 6.7 280 80-360 79-383 (873)
5 KOG0444 Cytoskeletal regulator 99.9 4.3E-28 9.3E-33 251.2 -1.8 285 78-369 6-295 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 5.4E-27 1.2E-31 243.1 -2.1 271 78-354 77-374 (1255)
7 PF11721 Malectin: Di-glucose 99.9 9.1E-24 2E-28 197.9 7.0 169 392-577 2-174 (174)
8 KOG0472 Leucine-rich repeat pr 99.9 9.5E-25 2.1E-29 216.6 -8.6 264 80-355 46-310 (565)
9 PLN03210 Resistant to P. syrin 99.9 2.7E-20 5.8E-25 223.6 22.6 260 102-373 610-877 (1153)
10 KOG0472 Leucine-rich repeat pr 99.8 5.9E-24 1.3E-28 211.0 -8.5 243 79-332 68-310 (565)
11 PRK15370 E3 ubiquitin-protein 99.8 7.1E-20 1.5E-24 206.5 19.9 304 23-361 57-406 (754)
12 KOG0618 Serine/threonine phosp 99.8 2.3E-22 4.9E-27 218.5 -1.4 194 176-373 242-484 (1081)
13 PLN03210 Resistant to P. syrin 99.8 2.1E-19 4.5E-24 216.0 22.2 262 79-353 611-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.8 4.5E-20 9.8E-25 206.8 15.2 249 81-372 203-452 (788)
15 cd00116 LRR_RI Leucine-rich re 99.8 6.5E-21 1.4E-25 198.6 2.3 272 83-354 2-319 (319)
16 KOG0618 Serine/threonine phosp 99.8 5.9E-21 1.3E-25 207.6 -0.4 245 103-353 241-487 (1081)
17 PRK15370 E3 ubiquitin-protein 99.8 4.4E-19 9.5E-24 200.2 11.5 246 80-356 179-429 (754)
18 PRK15387 E3 ubiquitin-protein 99.8 2.2E-18 4.7E-23 193.4 16.4 230 103-373 201-430 (788)
19 cd00116 LRR_RI Leucine-rich re 99.8 3.5E-19 7.6E-24 185.6 4.3 252 80-331 24-319 (319)
20 KOG4237 Extracellular matrix p 99.7 5.7E-20 1.2E-24 182.8 -2.1 255 106-362 70-366 (498)
21 KOG0617 Ras suppressor protein 99.7 1.2E-19 2.6E-24 160.9 -4.9 161 79-245 33-194 (264)
22 KOG4237 Extracellular matrix p 99.7 2.9E-19 6.4E-24 177.7 -4.5 242 128-370 68-351 (498)
23 KOG0617 Ras suppressor protein 99.7 2.6E-19 5.7E-24 158.8 -5.1 159 99-262 29-188 (264)
24 PLN03150 hypothetical protein; 99.7 6.5E-16 1.4E-20 173.8 15.0 157 23-188 366-528 (623)
25 PLN03150 hypothetical protein; 99.6 1.4E-14 3.1E-19 163.0 12.8 111 458-583 249-363 (623)
26 PF12819 Malectin_like: Carboh 99.4 4.1E-13 8.8E-18 140.3 11.3 114 455-582 228-347 (347)
27 KOG0532 Leucine-rich repeat (L 99.3 1.6E-13 3.5E-18 143.0 -2.9 196 101-330 73-271 (722)
28 COG4886 Leucine-rich repeat (L 99.3 5.2E-12 1.1E-16 135.7 7.5 181 148-336 113-294 (394)
29 COG4886 Leucine-rich repeat (L 99.3 5.9E-12 1.3E-16 135.3 7.6 200 107-315 97-297 (394)
30 KOG0532 Leucine-rich repeat (L 99.3 2.7E-13 6E-18 141.3 -3.7 194 80-282 76-271 (722)
31 KOG1909 Ran GTPase-activating 99.1 1.7E-11 3.7E-16 121.4 2.6 88 267-354 209-310 (382)
32 KOG1909 Ran GTPase-activating 99.1 3E-11 6.5E-16 119.7 2.2 233 80-332 31-311 (382)
33 KOG3207 Beta-tubulin folding c 99.1 2.4E-11 5.3E-16 123.4 -0.0 208 124-333 118-340 (505)
34 KOG3207 Beta-tubulin folding c 99.1 4.2E-11 9E-16 121.7 1.6 207 148-356 118-340 (505)
35 KOG4658 Apoptotic ATPase [Sign 99.0 4.4E-10 9.5E-15 129.6 6.6 105 104-209 546-652 (889)
36 PF14580 LRR_9: Leucine-rich r 99.0 5.3E-10 1.1E-14 104.1 4.5 107 101-212 17-126 (175)
37 KOG1259 Nischarin, modulator o 98.9 3.7E-10 7.9E-15 109.5 2.7 131 199-335 284-415 (490)
38 KOG1259 Nischarin, modulator o 98.9 9.1E-10 2E-14 106.8 2.4 141 212-358 273-415 (490)
39 KOG0531 Protein phosphatase 1, 98.9 2.5E-10 5.4E-15 123.2 -1.7 243 101-357 70-320 (414)
40 PF14580 LRR_9: Leucine-rich r 98.9 3.9E-09 8.4E-14 98.3 6.4 61 148-212 16-77 (175)
41 KOG4658 Apoptotic ATPase [Sign 98.9 1.5E-09 3.3E-14 125.2 4.5 254 100-359 520-787 (889)
42 KOG0531 Protein phosphatase 1, 98.8 6.9E-10 1.5E-14 119.7 -1.7 219 124-355 69-290 (414)
43 PF13855 LRR_8: Leucine rich r 98.6 1.7E-08 3.7E-13 77.2 2.5 59 104-162 2-60 (61)
44 PF13855 LRR_8: Leucine rich r 98.6 2.1E-08 4.5E-13 76.7 2.4 61 271-331 1-61 (61)
45 KOG2982 Uncharacterized conser 98.4 9.2E-08 2E-12 93.1 1.4 84 126-209 70-156 (418)
46 PF12819 Malectin_like: Carboh 98.4 2.6E-06 5.6E-11 89.3 12.2 113 458-584 45-163 (347)
47 KOG2982 Uncharacterized conser 98.3 1.1E-07 2.4E-12 92.5 0.5 87 101-187 69-158 (418)
48 KOG2120 SCF ubiquitin ligase, 98.3 3.6E-08 7.8E-13 95.9 -4.0 176 152-329 186-373 (419)
49 KOG4579 Leucine-rich repeat (L 98.3 7E-08 1.5E-12 83.6 -2.0 132 225-360 29-164 (177)
50 KOG1859 Leucine-rich repeat pr 98.3 3.8E-08 8.3E-13 106.0 -5.2 196 150-356 83-293 (1096)
51 COG5238 RNA1 Ran GTPase-activa 98.2 1.1E-06 2.4E-11 84.6 4.9 156 80-236 31-227 (388)
52 KOG2120 SCF ubiquitin ligase, 98.2 2.9E-08 6.2E-13 96.6 -6.0 193 128-322 186-390 (419)
53 KOG1859 Leucine-rich repeat pr 98.2 2.1E-08 4.5E-13 108.0 -8.2 110 120-236 102-222 (1096)
54 COG5238 RNA1 Ran GTPase-activa 98.2 5.7E-07 1.2E-11 86.6 1.9 92 97-188 24-133 (388)
55 KOG4579 Leucine-rich repeat (L 98.1 2.7E-07 6E-12 79.9 -2.6 103 106-212 30-136 (177)
56 KOG3593 Predicted receptor-lik 97.9 1.2E-05 2.6E-10 77.6 4.1 73 458-537 105-179 (355)
57 PRK15386 type III secretion pr 97.8 0.00011 2.4E-09 77.0 10.3 57 147-209 48-104 (426)
58 PRK15386 type III secretion pr 97.8 6.4E-05 1.4E-09 78.8 8.2 136 99-257 48-187 (426)
59 PF12799 LRR_4: Leucine Rich r 97.8 3E-05 6.5E-10 54.5 3.6 36 104-140 2-37 (44)
60 PF12799 LRR_4: Leucine Rich r 97.7 3.1E-05 6.8E-10 54.4 3.2 36 128-164 2-37 (44)
61 KOG3665 ZYG-1-like serine/thre 97.5 5.2E-05 1.1E-09 85.9 3.0 82 150-233 147-230 (699)
62 KOG3665 ZYG-1-like serine/thre 97.4 6.8E-05 1.5E-09 85.0 2.3 138 103-242 122-269 (699)
63 KOG1644 U2-associated snRNP A' 97.4 0.00036 7.8E-09 65.0 6.0 82 104-188 43-126 (233)
64 KOG1644 U2-associated snRNP A' 97.2 0.00056 1.2E-08 63.7 5.4 105 127-233 42-150 (233)
65 PF08263 LRRNT_2: Leucine rich 97.2 0.00061 1.3E-08 47.6 4.1 36 28-73 2-43 (43)
66 KOG2739 Leucine-rich acidic nu 97.0 0.0004 8.7E-09 67.4 2.7 62 125-188 41-104 (260)
67 KOG2739 Leucine-rich acidic nu 96.9 0.00045 9.8E-09 67.0 2.4 86 99-188 39-129 (260)
68 PF13306 LRR_5: Leucine rich r 96.6 0.0052 1.1E-07 54.3 6.7 14 147-160 31-44 (129)
69 PF13306 LRR_5: Leucine rich r 96.6 0.0041 8.9E-08 55.0 6.0 106 98-208 7-112 (129)
70 PF08693 SKG6: Transmembrane a 96.1 0.0098 2.1E-07 40.0 3.8 28 597-624 12-39 (40)
71 KOG1947 Leucine rich repeat pr 95.8 0.0019 4.2E-08 71.0 -0.9 16 291-306 358-373 (482)
72 PF04478 Mid2: Mid2 like cell 95.5 0.014 3E-07 51.9 3.6 18 595-612 47-64 (154)
73 KOG4341 F-box protein containi 95.4 0.0013 2.8E-08 67.8 -3.5 285 67-353 125-437 (483)
74 KOG1947 Leucine rich repeat pr 95.2 0.0042 9.1E-08 68.4 -0.9 16 267-282 358-373 (482)
75 PF00560 LRR_1: Leucine Rich R 95.0 0.0078 1.7E-07 35.2 0.4 18 129-147 2-19 (22)
76 KOG4308 LRR-containing protein 95.0 0.00044 9.5E-09 75.2 -8.9 36 129-164 89-128 (478)
77 PTZ00382 Variant-specific surf 95.0 0.028 6E-07 46.8 3.8 21 594-614 63-83 (96)
78 KOG2123 Uncharacterized conser 94.9 0.0026 5.7E-08 62.1 -3.0 57 176-236 20-76 (388)
79 KOG2123 Uncharacterized conser 94.8 0.0044 9.5E-08 60.6 -1.8 79 267-348 37-123 (388)
80 PF00560 LRR_1: Leucine Rich R 94.6 0.014 3.1E-07 34.1 0.8 19 297-316 2-20 (22)
81 KOG4308 LRR-containing protein 93.8 0.0016 3.5E-08 70.8 -8.0 185 151-355 87-303 (478)
82 PF01102 Glycophorin_A: Glycop 93.5 0.012 2.6E-07 50.9 -1.4 29 596-624 63-91 (122)
83 PF01034 Syndecan: Syndecan do 93.5 0.023 5E-07 42.4 0.2 19 617-635 30-48 (64)
84 KOG0473 Leucine-rich repeat pr 92.4 0.0031 6.6E-08 60.1 -7.2 87 98-187 37-123 (326)
85 PF06697 DUF1191: Protein of u 92.2 0.83 1.8E-05 45.4 9.0 25 592-616 208-232 (278)
86 PF13504 LRR_7: Leucine rich r 89.5 0.23 5E-06 27.0 1.4 11 129-139 3-13 (17)
87 PF02439 Adeno_E3_CR2: Adenovi 89.4 0.18 4E-06 33.3 1.0 28 599-626 5-34 (38)
88 KOG0473 Leucine-rich repeat pr 89.1 0.0058 1.3E-07 58.3 -8.6 88 122-212 37-124 (326)
89 PF02480 Herpes_gE: Alphaherpe 85.9 0.6 1.3E-05 50.4 3.1 27 488-520 269-295 (439)
90 PHA03265 envelope glycoprotein 82.7 0.96 2.1E-05 45.7 2.7 21 611-631 362-382 (402)
91 PF08374 Protocadherin: Protoc 82.6 1.7 3.8E-05 41.1 4.2 19 595-613 36-54 (221)
92 PF01034 Syndecan: Syndecan do 82.5 0.4 8.7E-06 35.9 -0.0 29 596-624 12-40 (64)
93 smart00370 LRR Leucine-rich re 81.4 1.2 2.6E-05 26.9 1.9 13 128-140 3-15 (26)
94 smart00369 LRR_TYP Leucine-ric 81.4 1.2 2.6E-05 26.9 1.9 13 128-140 3-15 (26)
95 KOG3864 Uncharacterized conser 80.9 0.5 1.1E-05 44.6 -0.0 31 201-231 103-133 (221)
96 PF15069 FAM163: FAM163 family 77.9 2.4 5.2E-05 37.4 3.2 24 596-619 5-28 (143)
97 smart00370 LRR Leucine-rich re 77.5 1.9 4.2E-05 26.0 1.9 14 151-164 2-15 (26)
98 smart00369 LRR_TYP Leucine-ric 77.5 1.9 4.2E-05 26.0 1.9 14 151-164 2-15 (26)
99 PF03302 VSP: Giardia variant- 76.7 2.7 5.8E-05 45.0 4.0 22 594-615 364-385 (397)
100 PF13516 LRR_6: Leucine Rich r 73.6 0.48 1E-05 28.1 -1.6 13 296-308 3-15 (24)
101 KOG3864 Uncharacterized conser 72.9 1.1 2.4E-05 42.4 -0.1 36 175-210 101-136 (221)
102 KOG4341 F-box protein containi 71.6 2.3 5.1E-05 44.5 1.9 246 79-324 164-457 (483)
103 PF05808 Podoplanin: Podoplani 70.8 1.4 3E-05 39.9 0.0 29 595-623 127-155 (162)
104 PF13908 Shisa: Wnt and FGF in 69.8 3.5 7.5E-05 38.8 2.5 12 597-608 79-90 (179)
105 PF12191 stn_TNFRSF12A: Tumour 68.8 1.6 3.5E-05 37.5 0.0 28 599-626 80-107 (129)
106 PF07204 Orthoreo_P10: Orthore 67.6 3.1 6.8E-05 33.7 1.4 21 605-625 49-69 (98)
107 PF12768 Rax2: Cortical protei 67.5 12 0.00026 37.9 6.0 17 593-609 223-239 (281)
108 PF12877 DUF3827: Domain of un 67.5 5.9 0.00013 43.7 3.9 32 593-624 266-297 (684)
109 PF03229 Alpha_GJ: Alphavirus 66.2 4.2 9.1E-05 34.3 1.9 29 596-624 82-110 (126)
110 PF01299 Lamp: Lysosome-associ 63.3 2.5 5.5E-05 43.5 0.2 30 598-627 271-301 (306)
111 smart00364 LRR_BAC Leucine-ric 63.1 5.2 0.00011 24.4 1.4 16 320-336 3-18 (26)
112 PF08693 SKG6: Transmembrane a 61.6 8.1 0.00018 26.3 2.3 31 597-627 8-39 (40)
113 PF15102 TMEM154: TMEM154 prot 59.8 9.2 0.0002 34.1 3.0 11 599-609 58-68 (146)
114 PF06365 CD34_antigen: CD34/Po 58.3 14 0.0003 35.2 4.1 29 597-625 100-129 (202)
115 PF04478 Mid2: Mid2 like cell 57.4 4.5 9.7E-05 36.3 0.7 25 593-618 49-73 (154)
116 PF07213 DAP10: DAP10 membrane 56.9 3 6.5E-05 32.8 -0.4 30 595-624 32-61 (79)
117 smart00365 LRR_SD22 Leucine-ri 56.9 8.8 0.00019 23.5 1.7 14 127-140 2-15 (26)
118 PF05454 DAG1: Dystroglycan (D 56.0 3.8 8.1E-05 41.4 0.0 26 598-624 149-174 (290)
119 PF14610 DUF4448: Protein of u 55.6 72 0.0016 30.2 8.7 28 599-626 159-186 (189)
120 TIGR00864 PCC polycystin catio 52.0 8.1 0.00018 50.1 1.9 32 277-308 1-32 (2740)
121 smart00368 LRR_RI Leucine rich 50.8 13 0.00028 23.0 1.8 13 320-332 3-15 (28)
122 KOG4242 Predicted myosin-I-bin 49.3 69 0.0015 34.6 7.9 36 297-332 415-453 (553)
123 PF13908 Shisa: Wnt and FGF in 48.8 17 0.00036 34.2 3.1 20 596-615 74-93 (179)
124 PF10873 DUF2668: Protein of u 44.4 33 0.00072 30.4 3.9 14 597-610 61-74 (155)
125 KOG4242 Predicted myosin-I-bin 43.7 36 0.00077 36.7 4.8 67 127-195 165-234 (553)
126 PF15345 TMEM51: Transmembrane 42.7 31 0.00067 33.3 3.8 28 596-624 57-84 (233)
127 PF01102 Glycophorin_A: Glycop 42.3 5.4 0.00012 34.7 -1.2 31 595-626 66-96 (122)
128 TIGR01478 STEVOR variant surfa 41.1 11 0.00023 37.6 0.5 7 619-625 280-286 (295)
129 KOG3763 mRNA export factor TAP 39.4 18 0.00039 39.6 1.9 65 269-335 216-286 (585)
130 PF12669 P12: Virus attachment 39.1 27 0.00059 26.0 2.3 7 603-609 3-9 (58)
131 PTZ00370 STEVOR; Provisional 35.9 12 0.00026 37.3 -0.0 7 619-625 276-282 (296)
132 PF06809 NPDC1: Neural prolife 34.8 30 0.00065 35.0 2.5 25 600-624 201-225 (341)
133 PF05568 ASFV_J13L: African sw 33.5 18 0.00038 31.9 0.6 23 602-624 34-56 (189)
134 KOG3763 mRNA export factor TAP 32.5 23 0.00049 38.8 1.4 64 293-357 216-285 (585)
135 PF02009 Rifin_STEVOR: Rifin/s 31.4 9.9 0.00021 38.7 -1.4 11 614-624 272-282 (299)
136 KOG1024 Receptor-like protein 30.4 42 0.00092 35.3 2.8 25 537-561 52-76 (563)
137 TIGR01167 LPXTG_anchor LPXTG-m 30.3 52 0.0011 21.1 2.3 8 617-624 25-32 (34)
138 PF15431 TMEM190: Transmembran 29.5 37 0.0008 28.4 1.8 14 611-624 73-86 (134)
139 PHA03281 envelope glycoprotein 28.9 74 0.0016 34.7 4.4 27 488-520 475-501 (642)
140 PF15176 LRR19-TM: Leucine-ric 27.4 23 0.00049 29.4 0.3 15 595-609 16-30 (102)
141 PTZ00382 Variant-specific surf 27.0 36 0.00077 28.3 1.4 10 596-605 69-78 (96)
142 PF03494 Beta-APP: Beta-amyloi 25.4 20 0.00043 23.3 -0.3 15 594-608 23-37 (39)
143 PF04689 S1FA: DNA binding pro 25.3 78 0.0017 23.8 2.7 29 595-623 11-40 (69)
144 PF15102 TMEM154: TMEM154 prot 24.7 23 0.0005 31.7 -0.2 13 597-609 60-72 (146)
145 PF02480 Herpes_gE: Alphaherpe 24.4 25 0.00054 38.1 0.0 18 597-614 352-369 (439)
146 PF05083 LST1: LST-1 protein; 24.4 56 0.0012 25.0 1.8 20 607-626 5-24 (74)
147 PHA03283 envelope glycoprotein 24.0 1.3E+02 0.0028 32.8 5.1 27 488-520 315-341 (542)
148 PF10389 CoatB: Bacteriophage 23.5 65 0.0014 22.7 1.9 20 604-623 25-44 (46)
149 smart00367 LRR_CC Leucine-rich 23.4 49 0.0011 19.8 1.2 11 127-137 2-12 (26)
150 PF12273 RCR: Chitin synthesis 22.1 36 0.00079 30.0 0.6 6 619-624 24-29 (130)
151 PF12301 CD99L2: CD99 antigen 22.1 39 0.00085 31.3 0.8 32 596-630 114-145 (169)
152 TIGR03778 VPDSG_CTERM VPDSG-CT 22.0 95 0.0021 19.0 2.1 13 612-624 12-24 (26)
153 PTZ00208 65 kDa invariant surf 20.7 25 0.00055 36.7 -0.8 40 598-638 388-427 (436)
154 smart00469 WIF Wnt-inhibitory 20.7 22 0.00048 31.5 -1.1 39 523-561 18-56 (136)
155 PF05283 MGC-24: Multi-glycosy 20.6 88 0.0019 29.5 2.8 27 597-623 157-183 (186)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-40 Score=396.55 Aligned_cols=332 Identities=32% Similarity=0.520 Sum_probs=293.7
Q ss_pred CCHHHHHHHHHHHHhcCCC----CCCCCCCCCCCCCCCCCCCCCCCCCeEeecCCCCCceeEEEEeCCCCCCCCchhhcC
Q 006515 26 TDSAEVDALNKLIDYWNLR----SKINLTTIDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMGELPSELFM 101 (642)
Q Consensus 26 ~~~~~~~aL~~~~~~~~~~----~~w~~~~~d~C~~~~~w~~~~~~~gv~C~~~~~~~~v~~L~l~~~~l~g~ip~~l~~ 101 (642)
.+++|++||++||+.+..+ .+|+.. .|||. | .||+|+. ..+|+.|+++++.+.|.+|+.+..
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~----w------~gv~c~~---~~~v~~L~L~~~~i~~~~~~~~~~ 91 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNSS-ADVCL----W------QGITCNN---SSRVVSIDLSGKNISGKISSAIFR 91 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCc----C------cceecCC---CCcEEEEEecCCCccccCChHHhC
Confidence 4678999999999998643 568755 68997 8 6999973 458999999999999999999999
Q ss_pred CCCCCEEEccCCCCCCCCchhhc-CCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEE
Q 006515 102 LRKLMDLNLGQNVLNGSIPAEIG-QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 180 (642)
Q Consensus 102 l~~L~~L~Ls~n~l~g~~p~~l~-~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 180 (642)
+++|++|+|++|.+.|.+|..+. .+++|++|+|++|.+++.+|. +.+++|++|+|++|.+++.+|..++++++|++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 99999999999999999998765 899999999999999988886 568899999999999998899999999999999
Q ss_pred EeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCC
Q 006515 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 260 (642)
Q Consensus 181 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~ 260 (642)
+|++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|+|++|.+++.+|..++++++|++|++++|.+.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCchhhhhcCCCCCeeecccccCCCCCchhhcCCcccceecccccccCCCcchhhcCCCCCcEEECcCCcCCCCCCcccC
Q 006515 261 DSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII 340 (642)
Q Consensus 261 ~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~ 340 (642)
...+..+.++++|++|+|++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.++++|+.|++++|.+++.+|..+.
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 77788888889999999999999888888888889999999999999888888888899999999999999888886553
Q ss_pred -CCCccEEEccCCcCCccCCccccC-CCceeeecC
Q 006515 341 -APNLIALDVSYNPLSGNLPRNFAK-GGLSMKALG 373 (642)
Q Consensus 341 -~~~L~~L~Ls~N~l~g~ip~~~~~-~~l~~~~~~ 373 (642)
+++|+.|++++|.+++.+|..+.. .+|+.+.++
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence 688889999999988888877766 777777766
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.8e-37 Score=367.35 Aligned_cols=293 Identities=35% Similarity=0.555 Sum_probs=217.1
Q ss_pred CceeEEEEeCCCCCCCCchhhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEe
Q 006515 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (642)
Q Consensus 79 ~~v~~L~l~~~~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L 158 (642)
.+++.|++++|++.|.+|. ..+++|++|+|++|.+++.+|..++++++|++|+|++|.+.+.+|..++++++|++|+|
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 4677888888888777765 45677777777777777777777777777777777777777777777777777777777
Q ss_pred ecccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCC
Q 006515 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (642)
Q Consensus 159 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~ 238 (642)
++|++.+.+|..++++++|++|+|++|++++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+++.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred chhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCCchhhcCCcccceecccccccCCCcchhhcCC
Q 006515 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (642)
Q Consensus 239 ~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 318 (642)
+|..+.++++|+.|++++|.+....+..+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..++.+
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 77777777777777777777766666666777777777777777777777777777777777777777777777777777
Q ss_pred CCCcEEECcCCcCCCCCCcccC-CCCccEEEccCCcCCccCCccccC-CCceeeecC
Q 006515 319 STLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPLSGNLPRNFAK-GGLSMKALG 373 (642)
Q Consensus 319 ~~L~~L~L~~N~l~g~~p~~~~-~~~L~~L~Ls~N~l~g~ip~~~~~-~~l~~~~~~ 373 (642)
++|+.|+|++|++++.+|..+. .++|+.|++++|++.+.+|..+.. ++|+.+.+.
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 7777777777777776665442 456666666666666666665554 555555544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=5.8e-28 Score=249.08 Aligned_cols=287 Identities=22% Similarity=0.233 Sum_probs=197.1
Q ss_pred CCCceeEEEEeCCCCCCCCchhhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEE
Q 006515 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (642)
Q Consensus 77 ~~~~v~~L~l~~~~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L 156 (642)
..+|++.|+|.+|.++..-.+++..++.|+.||||.|.++..--.+|..=.++++|+|++|.|+..--..|..+.+|..|
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 45789999999998877777888999999999999999984333456666789999999999987777788888999999
Q ss_pred EeecccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCC------------------------cEEEecCCcCC
Q 006515 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL------------------------RILWASDNLFT 212 (642)
Q Consensus 157 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L------------------------~~L~L~~n~l~ 212 (642)
.|+.|+++...+..|.+|++|+.|+|..|++.-.--..|..|++| ++|+|+.|+++
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 999999986666777789999999998888763323344444444 44455555544
Q ss_pred CCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCCchhhc
Q 006515 213 GKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLG 292 (642)
Q Consensus 213 g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~ 292 (642)
..-..++.+++.|+.|+|++|.+...-++.+...++|+.|+|+.|.++......|..+..|++|+|++|++...-...|.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 44445555566666666666666655555566666666666666666666666666666666666666666543344556
Q ss_pred CCcccceecccccccCCCcch---hhcCCCCCcEEECcCCcCCCCCCcc-c-CCCCccEEEccCCcCCccCCccccC
Q 006515 293 TFAKLQLLDLSFNKLTGQIPT---SLQDLSTLQYLYLGNNNLSGELPVN-I-IAPNLIALDVSYNPLSGNLPRNFAK 364 (642)
Q Consensus 293 ~l~~L~~L~Ls~N~l~g~~p~---~l~~l~~L~~L~L~~N~l~g~~p~~-~-~~~~L~~L~Ls~N~l~g~ip~~~~~ 364 (642)
.+++|+.|||++|.++..|-+ .|..+++|+.|+|.+|++. .||.. + .++.|+.|||.+|.+...-|..|..
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeeccccccc
Confidence 667777777777776654432 3556777777777777776 45432 2 3567777777777776555555544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.6e-27 Score=245.82 Aligned_cols=280 Identities=24% Similarity=0.192 Sum_probs=182.9
Q ss_pred ceeEEEEeCCCCCCCCchhhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEee
Q 006515 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (642)
Q Consensus 80 ~v~~L~l~~~~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~ 159 (642)
.+..|++++|.++..-+..|.++++|+.+++..|.++ .||...+...+|+.|+|.+|.|+..-..++..++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 5677888888887777777888888888888888887 788766667778888888888876666677778888888888
Q ss_pred cccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCc
Q 006515 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (642)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~ 239 (642)
.|.++...-.+|..-.++++|+|++|.++..--..|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 88877544455666677888888888887666677777788888888888888655666777888888888877765332
Q ss_pred hhhhhcCCCCCeEEcCCCCCCCCchhhhh------------------------cCCCCCeeecccccCCCCCchhhcCCc
Q 006515 240 PRSFRALNKLEDLRIGDLSAEDSTLDFLE------------------------SQKSLSILSLRNCRVSGKIPDQLGTFA 295 (642)
Q Consensus 240 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~------------------------~~~~L~~L~L~~n~l~~~ip~~~~~l~ 295 (642)
-..|..|++|+.|.|..|.+.......|- +++.|+.|+|+.|.+...-++.+.-.+
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 33555566666666555555444333344 444444555555544444444444445
Q ss_pred ccceecccccccCCCcchhhcCCCCCcEEECcCCcCCCCCCccc-CCCCccEEEccCCcCCccCCc
Q 006515 296 KLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPR 360 (642)
Q Consensus 296 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~-~~~~L~~L~Ls~N~l~g~ip~ 360 (642)
+|+.|+|++|+++...+.+|..+..|++|+|++|.++..--..+ .+++|++|||++|.+++.|-+
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 55555555555554444444444444444444444432111111 246777777777777776654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=4.3e-28 Score=251.24 Aligned_cols=285 Identities=27% Similarity=0.369 Sum_probs=238.1
Q ss_pred CCceeEEEEeCCCCC-CCCchhhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEE
Q 006515 78 SCHITHLKIYALDIM-GELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (642)
Q Consensus 78 ~~~v~~L~l~~~~l~-g~ip~~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L 156 (642)
..-|+.+++++|+++ +.+|.+..++++++.|.|....+. .+|..++.|.+|++|.+++|++. .+-..++.|+.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 445888999999999 479999999999999999999887 89999999999999999999998 667778899999999
Q ss_pred EeecccCC-CCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCC
Q 006515 157 SFSSNNFF-GPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 235 (642)
Q Consensus 157 ~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l 235 (642)
++..|++. ..+|..+..+..|..||||+|++. +.|..+..-+++-.|+|++|++.......+-+++.|-.|||++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 99999885 457888999999999999999998 7899999999999999999999844334566899999999999999
Q ss_pred CCCchhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCC-CCCchhhcCCcccceecccccccCCCcchh
Q 006515 236 EGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS-GKIPDQLGTFAKLQLLDLSFNKLTGQIPTS 314 (642)
Q Consensus 236 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~-~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~ 314 (642)
. .+|..+..+..|+.|+|++|.+.......+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|++. .+|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 8 67778899999999999999887766666777788888888876543 358888888888999999999888 88888
Q ss_pred hcCCCCCcEEECcCCcCCCCCCccc-CCCCccEEEccCCcCCccCCccccC-CCcee
Q 006515 315 LQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLSM 369 (642)
Q Consensus 315 l~~l~~L~~L~L~~N~l~g~~p~~~-~~~~L~~L~Ls~N~l~g~ip~~~~~-~~l~~ 369 (642)
+.++++|+.|+|++|+++. +.... .-.+|++|++|.|+++ .+|..+++ +.|..
T Consensus 241 ly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK 295 (1255)
T ss_pred HhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence 8888888889998888873 22111 2367888888888888 67777776 55443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=5.4e-27 Score=243.12 Aligned_cols=271 Identities=27% Similarity=0.400 Sum_probs=196.2
Q ss_pred CCceeEEEEeCCCCCC-CCchhhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCcc-ccCCCCCcE
Q 006515 78 SCHITHLKIYALDIMG-ELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTE-LGNLTKLIS 155 (642)
Q Consensus 78 ~~~v~~L~l~~~~l~g-~ip~~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~-l~~l~~L~~ 155 (642)
..+++++.+..|++.. -||+.+..|..|+.||||+|++. +.|..+..-+++-.|+||+|+|. .||.. |-+|+.|-+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 3456667777777743 48889999999999999999998 78888888889999999999998 66755 578899999
Q ss_pred EEeecccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCC-CCCchhccCcccccEEEccCCC
Q 006515 156 LSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFT-GKIPEFFGTLTELADLRLQGTL 234 (642)
Q Consensus 156 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-g~~p~~l~~l~~L~~L~L~~n~ 234 (642)
|||++|++. .+|+.+..|.+|++|.|++|.+...--..+-.+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|+
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 999999987 67777888899999999998876433334445667777777766533 3577777788888888888888
Q ss_pred CCCCchhhhhcCCCCCeEEcCCCCCCCCc----------------------hhhhhcCCCCCeeecccccCC-CCCchhh
Q 006515 235 LEGPIPRSFRALNKLEDLRIGDLSAEDST----------------------LDFLESQKSLSILSLRNCRVS-GKIPDQL 291 (642)
Q Consensus 235 l~~~~p~~~~~l~~L~~L~l~~~~~~~~~----------------------~~~l~~~~~L~~L~L~~n~l~-~~ip~~~ 291 (642)
+. .+|+.+.++++|+.|+|++|.++... ++.+.+++.|+.|.+.+|+++ .-||+.+
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 77 67788888888888888877665432 233334444444444444443 2356666
Q ss_pred cCCcccceecccccccCCCcchhhcCCCCCcEEECcCCcCCCCCCcccC-CCCccEEEccCCcC
Q 006515 292 GTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPL 354 (642)
Q Consensus 292 ~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~-~~~L~~L~Ls~N~l 354 (642)
+.+.+|+++..++|++. .+|+.+..+..|+.|.|++|++. ++|+.+. ++.|+.|||..|+-
T Consensus 313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 66666666666666665 66777777777777777777776 6676553 57788888888773
No 7
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.89 E-value=9.1e-24 Score=197.91 Aligned_cols=169 Identities=44% Similarity=0.782 Sum_probs=108.9
Q ss_pred ccccccCCCccccCCCceecCCccccccee-EEeeCCCceEeeeeeeeecCCCCCceeeecccccccCCChHHHhhhccc
Q 006515 392 SFSIKCGGTQIASASGIEFDDDSKTLEAAS-FYTSSGNRWAVSNTGNFISNPNGPLYIAQTDSQITGTLDSELYKTARIS 470 (642)
Q Consensus 392 ~~~~~c~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~w~~s~~G~f~~~~~g~~~i~~s~~~i~g~~~~~ly~t~r~~ 470 (642)
.+.+|||+.......+..|..|....+..+ ++.. .+. ..........+.++.++.+|||+|++
T Consensus 2 ~~~IN~Gg~~~~~~~g~~w~~D~~~~~g~~~y~~~---------------~~~-~~~~~~~~~~i~~t~d~~Lyqt~R~g 65 (174)
T PF11721_consen 2 VLRINAGGPAYTDSSGIVWEADQYYTGGSWGYYVS---------------SDN-NGSTSSTNSSIPGTTDDPLYQTERYG 65 (174)
T ss_dssp EEEEEETSSSEEETTTEEE-SSSSSTTSS---------------------------SSTTS--TTS-HHHHHTTT-----
T ss_pred EEEEECCCCcccCCCCCEEcCCCCCCCCCcccccc---------------ccc-ccccccccccccCCCchhhhHhhcCC
Confidence 357899998865566888888765333222 2111 000 00112234466778899999999999
Q ss_pred CCcceeeccc-cCCceEEEEEEEEEeEecCCCCcccccceEEEEEEcCeEecccCchhhhhCCCCceEEEEE-EEEecCC
Q 006515 471 PSSLRYYGLG-LENGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTF-EANVTNT 548 (642)
Q Consensus 471 ~~~l~~~~~~-~~~g~y~v~lhF~e~~~~~~~~~~~~g~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~-~v~v~~~ 548 (642)
+.+++ |.++ +++|.|.|+|||+|+.+..++.+...|+|+|||+|||++++++|||++++|+..+|+++.| .|.|+||
T Consensus 66 ~~~f~-Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg 144 (174)
T PF11721_consen 66 PSSFS-YDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDG 144 (174)
T ss_dssp SSSEE-EEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETT
T ss_pred CCceE-EEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCC
Confidence 77767 5566 8999999999999998554444556899999999999999999999999998776777777 8999999
Q ss_pred eEEEEEEecCCCCccccCCcccC-ceEeeE
Q 006515 549 IIEIHFFWAGKGTCCIPFQGTYG-PLVSAI 577 (642)
Q Consensus 549 ~l~i~~~~~~~g~~~~~~~~~~~-~~ln~i 577 (642)
.|+|+|.|+++|+..++..+.++ |+||||
T Consensus 145 ~L~i~f~~~~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 145 TLNIQFVWAGKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp EEETTEEEE--SEEEEEEESSSSSSSEEEE
T ss_pred cEEEEEEecCCCcEEeeccccCCCcEEeeC
Confidence 99999999999999888877776 999997
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=9.5e-25 Score=216.63 Aligned_cols=264 Identities=28% Similarity=0.401 Sum_probs=223.9
Q ss_pred ceeEEEEeCCCCCCCCchhhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEee
Q 006515 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (642)
Q Consensus 80 ~v~~L~l~~~~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~ 159 (642)
.+..+.+++|++. .+.+.+.++..|.+|++++|++. ..|++++.+..++.|+.++|+++ .+|..++.+.+|+.|+.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 3566777777774 45677889999999999999998 78889999999999999999998 899999999999999999
Q ss_pred cccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCc
Q 006515 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (642)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~ 239 (642)
+|.+. ++|++++.+..|+.|+..+|+++ ..|..+.++.+|..|++.+|++....|+.+. ++.|++||...|.++ .+
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cC
Confidence 99987 67888999999999999999998 6788888999999999999999866666555 999999999888776 78
Q ss_pred hhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCCchhhc-CCcccceecccccccCCCcchhhcCC
Q 006515 240 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLG-TFAKLQLLDLSFNKLTGQIPTSLQDL 318 (642)
Q Consensus 240 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~-~l~~L~~L~Ls~N~l~g~~p~~l~~l 318 (642)
|..++.+.+|+.|++..|.+...+ .|.++..|++|.++.|++. .+|.... .+++|.+|||..|+++ ++|..+.-+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 889999999999999888776543 7788888999999999887 6777655 7889999999999998 788888888
Q ss_pred CCCcEEECcCCcCCCCCCcccCCCCccEEEccCCcCC
Q 006515 319 STLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLS 355 (642)
Q Consensus 319 ~~L~~L~L~~N~l~g~~p~~~~~~~L~~L~Ls~N~l~ 355 (642)
.+|++||+++|.+++ +|.....-.|+.|-+.+|++.
T Consensus 275 rsL~rLDlSNN~is~-Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 275 RSLERLDLSNNDISS-LPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred hhhhhhcccCCcccc-CCcccccceeeehhhcCCchH
Confidence 899999999999984 444554337888888888875
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=2.7e-20 Score=223.59 Aligned_cols=260 Identities=22% Similarity=0.289 Sum_probs=151.7
Q ss_pred CCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEEE
Q 006515 102 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 181 (642)
Q Consensus 102 l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 181 (642)
+.+|+.|+|++|.+. .+|..+..+++|++|+|+++...+.+|. ++.+++|++|+|++|.....+|..+.++++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 344555555555444 3444444555555555554443334442 44455555555555544444555555555555555
Q ss_pred eccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCC
Q 006515 182 IDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261 (642)
Q Consensus 182 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~ 261 (642)
+++|...+.+|..+ ++++|+.|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|+.|.+.++....
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK 761 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhh
Confidence 55544444444433 4455555555555444344332 234455555555543 334333 34555555554422110
Q ss_pred C-------chhhhhcCCCCCeeecccccCCCCCchhhcCCcccceecccccccCCCcchhhcCCCCCcEEECcCCcCCCC
Q 006515 262 S-------TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE 334 (642)
Q Consensus 262 ~-------~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ 334 (642)
. .+......++|+.|+|++|...+.+|..++++++|+.|+|++|...+.+|..+ ++++|+.|+|++|.....
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 0 01112234688899999998888899999999999999999886656788766 788899999998876666
Q ss_pred CCcccCCCCccEEEccCCcCCccCCccccC-CCceeeecC
Q 006515 335 LPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLSMKALG 373 (642)
Q Consensus 335 ~p~~~~~~~L~~L~Ls~N~l~g~ip~~~~~-~~l~~~~~~ 373 (642)
+|.. ..+|+.|+|++|.++ .+|.++.. ++|+.+.+.
T Consensus 841 ~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~ 877 (1153)
T PLN03210 841 FPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMN 877 (1153)
T ss_pred cccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECC
Confidence 6642 467888899988887 67776666 777776654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=5.9e-24 Score=211.04 Aligned_cols=243 Identities=28% Similarity=0.465 Sum_probs=222.4
Q ss_pred CceeEEEEeCCCCCCCCchhhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEe
Q 006515 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (642)
Q Consensus 79 ~~v~~L~l~~~~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L 158 (642)
..++.+++..+.+. ++|++++.+..++.|+.++|++. .+|..++++.+|+.|+.++|.+. ++|++++.+..|+.|+.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 34778888888875 78999999999999999999998 89999999999999999999998 88999999999999999
Q ss_pred ecccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCC
Q 006515 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (642)
Q Consensus 159 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~ 238 (642)
.+|+++ .+|+.+.++.+|..|++.+|++....|..+. ++.|++||...|.+. .+|+.++.+.+|+.|+|..|++. .
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c
Confidence 999998 6888899999999999999999965555554 999999999998876 89999999999999999999998 5
Q ss_pred chhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCCchhhcCCcccceecccccccCCCcchhhcCC
Q 006515 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (642)
Q Consensus 239 ~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 318 (642)
+| .|..++.|.+|+++.|++...+.....++.+|..|||++|++. +.|+.+.-+.+|+.||+|+|.++ .+|.+++++
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 66 8999999999999999888877777889999999999999999 89999999999999999999999 688899999
Q ss_pred CCCcEEECcCCcCC
Q 006515 319 STLQYLYLGNNNLS 332 (642)
Q Consensus 319 ~~L~~L~L~~N~l~ 332 (642)
.|+.|-+.+|.+.
T Consensus 298 -hL~~L~leGNPlr 310 (565)
T KOG0472|consen 298 -HLKFLALEGNPLR 310 (565)
T ss_pred -eeeehhhcCCchH
Confidence 9999999999876
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=7.1e-20 Score=206.53 Aligned_cols=304 Identities=21% Similarity=0.294 Sum_probs=193.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCC-------CCCCCCCCCCCCCCCCCC------CCCCCCCeEeecCCCCCceeEEEEeCC
Q 006515 23 QTSTDSAEVDALNKLIDYWNLR-------SKINLTTIDPCTRNASWA------SENANPRVACDCTSNSCHITHLKIYAL 89 (642)
Q Consensus 23 ~~~~~~~~~~aL~~~~~~~~~~-------~~w~~~~~d~C~~~~~w~------~~~~~~gv~C~~~~~~~~v~~L~l~~~ 89 (642)
.+.+.++|.+.+.++.+.+..+ ..|+.. .|.|.....-. .+.....|.|. ...|+++.+.+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~-~~fc~~~~~~~~~l~~~~~~~~~tv~~~----~~~vt~l~~~g~ 131 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGA-DQYCILSENSQEILSIVFNTEGYTVEGG----GKSVTYTRVTES 131 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCC-CcccccCCcchhhheeeecCCceEEecC----CCcccccccccc
Confidence 4456789999999999888665 348766 68886322000 00122345554 234666655432
Q ss_pred CCCCC------C--------------c--------hhh-----cCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEccc
Q 006515 90 DIMGE------L--------------P--------SEL-----FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGI 136 (642)
Q Consensus 90 ~l~g~------i--------------p--------~~l-----~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~ 136 (642)
..... . + ..+ +-..+...|+++++.++ .+|..+. ++|+.|+|++
T Consensus 132 ~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~ 208 (754)
T PRK15370 132 EQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDN 208 (754)
T ss_pred cccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecC
Confidence 21100 0 0 001 11234677888888777 5666553 4688888888
Q ss_pred CCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCc
Q 006515 137 NNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP 216 (642)
Q Consensus 137 n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p 216 (642)
|+++ .+|..+. ++|++|+|++|+++ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|++++|+++ .+|
T Consensus 209 N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP 278 (754)
T PRK15370 209 NELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLP 278 (754)
T ss_pred CCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccc
Confidence 8887 5666553 47888888888876 4665543 46888888888877 5666553 47888888888877 466
Q ss_pred hhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCCchhhcCCcc
Q 006515 217 EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAK 296 (642)
Q Consensus 217 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~ 296 (642)
..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.+...+.. + .++|+.|++++|.+++ +|..+. ++
T Consensus 279 ~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~-LP~~l~--~s 347 (754)
T PRK15370 279 ENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPET-L--PPGLKTLEAGENALTS-LPASLP--PE 347 (754)
T ss_pred cccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCcc-c--cccceeccccCCcccc-CChhhc--Cc
Confidence 6553 478888888888774 444332 3677777777776643221 1 2577788888887774 665553 67
Q ss_pred cceecccccccCCCcchhhcCCCCCcEEECcCCcCCCCCCcccCCCCccEEEccCCcCCccCCcc
Q 006515 297 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRN 361 (642)
Q Consensus 297 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~~L~~L~Ls~N~l~g~ip~~ 361 (642)
|+.|++++|+++ .+|..+. ++|+.|+|++|+++ .+|..+ ...|+.|++++|+|+ .+|..
T Consensus 348 L~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l-~~sL~~LdLs~N~L~-~LP~s 406 (754)
T PRK15370 348 LQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENL-PAALQIMQASRNNLV-RLPES 406 (754)
T ss_pred ccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhH-HHHHHHHhhccCCcc-cCchh
Confidence 888888888877 5666553 57888888888877 456433 246777888888877 55544
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=2.3e-22 Score=218.51 Aligned_cols=194 Identities=30% Similarity=0.408 Sum_probs=138.2
Q ss_pred CCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCC----------------------CCchhccCcccccEEEccCC
Q 006515 176 SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG----------------------KIPEFFGTLTELADLRLQGT 233 (642)
Q Consensus 176 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g----------------------~~p~~l~~l~~L~~L~L~~n 233 (642)
+|+++++++|+++ .+|++++.+.+|+.|.+.+|+++. .+|.....++.|++|+|..|
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 4555666666666 467888899999999999988742 34555666777778888777
Q ss_pred CCCCCchhhh-h-------------------------cCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCC
Q 006515 234 LLEGPIPRSF-R-------------------------ALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287 (642)
Q Consensus 234 ~l~~~~p~~~-~-------------------------~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~i 287 (642)
++.. +|+.+ . ..+.|+.|.+.+|.+++...+.+.++++|+.|+|++|++....
T Consensus 321 ~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 321 NLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred cccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 7753 22221 1 1123455666667777767777788889999999999887444
Q ss_pred chhhcCCcccceecccccccCCCcchhhcCCCCCcEEECcCCcCCCCCCcccCCCCccEEEccCCcCCc-cCCccccCCC
Q 006515 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSG-NLPRNFAKGG 366 (642)
Q Consensus 288 p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~~L~~L~Ls~N~l~g-~ip~~~~~~~ 366 (642)
...+.++..|++|+||+|+++ .+|.++.+++.|+.|...+|++. ..|+...++.|+.+|+|.|+|+- .+|...-.++
T Consensus 400 as~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~ 477 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPN 477 (1081)
T ss_pred HHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhCCCcc
Confidence 446778888999999999998 78888888888888888888887 67755567888888888888774 3443332267
Q ss_pred ceeeecC
Q 006515 367 LSMKALG 373 (642)
Q Consensus 367 l~~~~~~ 373 (642)
|+.++++
T Consensus 478 LkyLdlS 484 (1081)
T KOG0618|consen 478 LKYLDLS 484 (1081)
T ss_pred cceeecc
Confidence 7776655
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=2.1e-19 Score=215.99 Aligned_cols=262 Identities=22% Similarity=0.275 Sum_probs=173.8
Q ss_pred CceeEEEEeCCCCCCCCchhhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEe
Q 006515 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (642)
Q Consensus 79 ~~v~~L~l~~~~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L 158 (642)
.+++.|++.++.+. .++..+..+++|+.|+|+++.....+|. ++.+++|++|+|++|.....+|..++++++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 35667777776654 5677788899999999998865567775 888999999999999877789999999999999999
Q ss_pred ecccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcc---------------
Q 006515 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT--------------- 223 (642)
Q Consensus 159 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~--------------- 223 (642)
++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .++
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhc
Confidence 9987777888766 7899999999999877677653 457888888888875 455433 233
Q ss_pred ----------------cccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCC
Q 006515 224 ----------------ELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287 (642)
Q Consensus 224 ----------------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~i 287 (642)
+|+.|+|++|...+.+|.+++++++|+.|++++|......+..+ ++++|+.|+|++|.....+
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 45555555555555556556666666666665553322222222 4555666666655444344
Q ss_pred chhhcCCcccceecccccccCCCcchhhcCCCCCcEEECcCCcCCCCCCccc-CCCCccEEEccCCc
Q 006515 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNP 353 (642)
Q Consensus 288 p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~-~~~~L~~L~Ls~N~ 353 (642)
|.. .++|+.|+|++|.++ .+|.++..+++|+.|+|++|+-...+|... .+++|+.+++++|.
T Consensus 842 p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 842 PDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 432 245556666666655 455556666666666665533333344332 24555566665554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4.5e-20 Score=206.81 Aligned_cols=249 Identities=27% Similarity=0.339 Sum_probs=138.2
Q ss_pred eeEEEEeCCCCCCCCchhhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeec
Q 006515 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (642)
Q Consensus 81 v~~L~l~~~~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~ 160 (642)
-..|+++.++++ .+|+.+. ++|+.|++++|+++ .+|. .+++|++|+|++|+++ .+|.. .++|+.|+|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 346788888886 6777665 47888888888887 4664 2577888888888888 45642 35777788888
Q ss_pred ccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCch
Q 006515 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (642)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~p 240 (642)
|.++ .+|..+ .+|+.|++++|+++ .+|.. +++|+.|++++|++++ +|... .+|+.|++++|.+++ +|
T Consensus 272 N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccc-cc
Confidence 7776 344322 45667777777776 34432 3567777777777764 33321 235555666666553 33
Q ss_pred hhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCCchhhcCCcccceecccccccCCCcchhhcCCCC
Q 006515 241 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 320 (642)
Q Consensus 241 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~ 320 (642)
.. ..+|+.|+|++|.+...+. ...+|+.|++++|+++ .+|.. ..+|+.|+|++|+++ .+|.. .++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~ 403 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSE 403 (788)
T ss_pred cc---ccccceEecCCCccCCCCC----CCcccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccC
Confidence 21 1355666666655543221 1234455555555554 23332 134555555555554 23322 134
Q ss_pred CcEEECcCCcCCCCCCcccCCCCccEEEccCCcCCccCCccccC-CCceeeec
Q 006515 321 LQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLSMKAL 372 (642)
Q Consensus 321 L~~L~L~~N~l~g~~p~~~~~~~L~~L~Ls~N~l~g~ip~~~~~-~~l~~~~~ 372 (642)
|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|.++.. ..+..+.+
T Consensus 404 L~~LdLS~N~Ls-sIP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 404 LKELMVSGNRLT-SLPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred CCEEEccCCcCC-CCCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 555555555554 24421 233444555555544 44444443 44444433
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=6.5e-21 Score=198.64 Aligned_cols=272 Identities=22% Similarity=0.243 Sum_probs=184.6
Q ss_pred EEEEeCCCCC-CCCchhhcCCCCCCEEEccCCCCCCC----CchhhcCCCCCcEEEcccCCCCC------CCCccccCCC
Q 006515 83 HLKIYALDIM-GELPSELFMLRKLMDLNLGQNVLNGS----IPAEIGQLSNMQYLSLGINNFTG------RVPTELGNLT 151 (642)
Q Consensus 83 ~L~l~~~~l~-g~ip~~l~~l~~L~~L~Ls~n~l~g~----~p~~l~~l~~L~~L~Ls~n~l~g------~ip~~l~~l~ 151 (642)
+|+|..+.++ ......+..+++|++|+++++.++.. ++..+...++|++|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666665 34455566677788888888887542 55566777888888888887762 2345567788
Q ss_pred CCcEEEeecccCCCCCchhhcCCCC---CCEEEeccCCCCC----CCchhhcCC-CCCcEEEecCCcCCCC----Cchhc
Q 006515 152 KLISLSFSSNNFFGPLPKELGKLTS---LQQLYIDSSGVTG----SIPQEFANL-KSLRILWASDNLFTGK----IPEFF 219 (642)
Q Consensus 152 ~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~g~----~p~~l 219 (642)
+|++|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888888887666666655555 8888888888773 233445566 7888888888888743 33455
Q ss_pred cCcccccEEEccCCCCCCC----chhhhhcCCCCCeEEcCCCCCCCCch----hhhhcCCCCCeeecccccCCCCCchhh
Q 006515 220 GTLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTL----DFLESQKSLSILSLRNCRVSGKIPDQL 291 (642)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~L~~n~l~~~ip~~~ 291 (642)
..+++|++|++++|.+++. ++..+..+++|++|++++|.+..... ..+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 6667888888888888753 33445566788888888877654422 334566778888888888775333322
Q ss_pred c-----CCcccceecccccccCC----CcchhhcCCCCCcEEECcCCcCCCC----CCcccC-C-CCccEEEccCCcC
Q 006515 292 G-----TFAKLQLLDLSFNKLTG----QIPTSLQDLSTLQYLYLGNNNLSGE----LPVNII-A-PNLIALDVSYNPL 354 (642)
Q Consensus 292 ~-----~l~~L~~L~Ls~N~l~g----~~p~~l~~l~~L~~L~L~~N~l~g~----~p~~~~-~-~~L~~L~Ls~N~l 354 (642)
. ..++|++|++++|.++. .+...+..+++|+++++++|.++.. +..... . +.+++|++.+|++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2 13688888888888762 2344556667888888888888744 222222 2 5777888877764
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=5.9e-21 Score=207.61 Aligned_cols=245 Identities=27% Similarity=0.326 Sum_probs=198.5
Q ss_pred CCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEEEe
Q 006515 103 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYI 182 (642)
Q Consensus 103 ~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 182 (642)
.+|+++|++.|+++ .+|+.++.+.+|+.|+..+|+++ .+|..+...++|+.|.+.+|.+. -+|+.+..++.|++|+|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 46788888888887 56677888888888888888885 77888888888888888888877 46667777888888888
Q ss_pred ccCCCCCCCchhhcCCCC-CcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCC
Q 006515 183 DSSGVTGSIPQEFANLKS-LRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261 (642)
Q Consensus 183 s~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~ 261 (642)
..|++....+..+..+.. |+.|+.+.|.+....--.=...+.|+.|++.+|.++...-..+.+..+|+.|+|+.|.++.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 888887433333333333 6677777777663221111245679999999999999888889999999999999999998
Q ss_pred CchhhhhcCCCCCeeecccccCCCCCchhhcCCcccceecccccccCCCcchhhcCCCCCcEEECcCCcCCC-CCCcccC
Q 006515 262 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG-ELPVNII 340 (642)
Q Consensus 262 ~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g-~~p~~~~ 340 (642)
.+...+.+++.|+.|+|++|+++ .+|..+..++.|++|...+|++. .+| .+..++.|+.+|++.|+|+. .+|....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 88899999999999999999999 89999999999999999999998 788 78999999999999999974 4454444
Q ss_pred CCCccEEEccCCc
Q 006515 341 APNLIALDVSYNP 353 (642)
Q Consensus 341 ~~~L~~L~Ls~N~ 353 (642)
.++|++|||++|.
T Consensus 475 ~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNT 487 (1081)
T ss_pred CcccceeeccCCc
Confidence 4899999999998
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=4.4e-19 Score=200.17 Aligned_cols=246 Identities=26% Similarity=0.449 Sum_probs=197.8
Q ss_pred ceeEEEEeCCCCCCCCchhhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEee
Q 006515 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (642)
Q Consensus 80 ~v~~L~l~~~~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~ 159 (642)
+.+.|++.+++++ .+|..+. ++|+.|+|++|.++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 5688999988886 4676553 57999999999999 6777664 58999999999998 6787654 479999999
Q ss_pred cccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCc
Q 006515 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (642)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~ 239 (642)
+|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 99998 6787765 58999999999998 5777654 589999999999984 565443 478999999999984 5
Q ss_pred hhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCCchhhcCCcccceecccccccCCCcchhhcCCC
Q 006515 240 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 319 (642)
Q Consensus 240 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 319 (642)
|..+ .++|+.|++++|.+...+ ..+ .++|+.|+|++|+++ .+|..+. ++|+.|+|++|+++ .+|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCccccCC-hhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--H
Confidence 5544 368999999999877643 333 368999999999998 5777664 78999999999999 6777664 3
Q ss_pred CCcEEECcCCcCCCCCCccc-----CCCCccEEEccCCcCCc
Q 006515 320 TLQYLYLGNNNLSGELPVNI-----IAPNLIALDVSYNPLSG 356 (642)
Q Consensus 320 ~L~~L~L~~N~l~g~~p~~~-----~~~~L~~L~Ls~N~l~g 356 (642)
.|+.|++++|+++ .+|..+ ..+.+..|+|.+|+++.
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 7999999999998 677543 24778999999999873
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=2.2e-18 Score=193.37 Aligned_cols=230 Identities=27% Similarity=0.311 Sum_probs=178.6
Q ss_pred CCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEEEe
Q 006515 103 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYI 182 (642)
Q Consensus 103 ~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 182 (642)
..-..|+|+.+.++ .+|..+. ++|+.|++++|+++ .+|. .+++|++|+|++|+++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 44678999999998 7888776 48999999999999 5775 3689999999999998 45643 468999999
Q ss_pred ccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCCC
Q 006515 183 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS 262 (642)
Q Consensus 183 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~ 262 (642)
++|.++ .+|.. .++|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.+...
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL 337 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccccc
Confidence 999988 45553 357889999999998 45653 4689999999999986 4542 34678889999887653
Q ss_pred chhhhhcCCCCCeeecccccCCCCCchhhcCCcccceecccccccCCCcchhhcCCCCCcEEECcCCcCCCCCCcccCCC
Q 006515 263 TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342 (642)
Q Consensus 263 ~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~ 342 (642)
+. ...+|+.|+|++|++++ +|.. .++|+.|++++|+++ .+|.. ..+|+.|+|++|++++ +|.. .+
T Consensus 338 P~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l--~s 402 (788)
T PRK15387 338 PT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL--PS 402 (788)
T ss_pred cc----cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc--cc
Confidence 21 12589999999999994 6643 367899999999998 57754 3579999999999984 6643 46
Q ss_pred CccEEEccCCcCCccCCccccCCCceeeecC
Q 006515 343 NLIALDVSYNPLSGNLPRNFAKGGLSMKALG 373 (642)
Q Consensus 343 ~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~ 373 (642)
+|+.|++++|+|+. +|... .+|..+.++
T Consensus 403 ~L~~LdLS~N~Lss-IP~l~--~~L~~L~Ls 430 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPMLP--SGLLSLSVY 430 (788)
T ss_pred CCCEEEccCCcCCC-CCcch--hhhhhhhhc
Confidence 89999999999984 77432 234444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=3.5e-19 Score=185.59 Aligned_cols=252 Identities=23% Similarity=0.264 Sum_probs=196.5
Q ss_pred ceeEEEEeCCCCCCC----CchhhcCCCCCCEEEccCCCCCC------CCchhhcCCCCCcEEEcccCCCCCCCCccccC
Q 006515 80 HITHLKIYALDIMGE----LPSELFMLRKLMDLNLGQNVLNG------SIPAEIGQLSNMQYLSLGINNFTGRVPTELGN 149 (642)
Q Consensus 80 ~v~~L~l~~~~l~g~----ip~~l~~l~~L~~L~Ls~n~l~g------~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~ 149 (642)
.++.|++.++.++.. ++..+...+.|++|+++.+.+.+ .++..+..+++|++|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 488999999988543 66778888999999999998862 24566788999999999999998767766666
Q ss_pred CCC---CcEEEeecccCCC----CCchhhcCC-CCCCEEEeccCCCCCC----CchhhcCCCCCcEEEecCCcCCCC---
Q 006515 150 LTK---LISLSFSSNNFFG----PLPKELGKL-TSLQQLYIDSSGVTGS----IPQEFANLKSLRILWASDNLFTGK--- 214 (642)
Q Consensus 150 l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~--- 214 (642)
+.+ |++|++++|++.+ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 655 9999999999873 233456677 8999999999999853 344567788999999999999853
Q ss_pred -CchhccCcccccEEEccCCCCCCC----chhhhhcCCCCCeEEcCCCCCCCCchhhhh-----cCCCCCeeecccccCC
Q 006515 215 -IPEFFGTLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTLDFLE-----SQKSLSILSLRNCRVS 284 (642)
Q Consensus 215 -~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~L~~n~l~ 284 (642)
++..+..+++|+.|++++|.+++. +...+..+++|++|++++|.+.......+. ..+.|+.|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 344556667999999999998754 345567789999999999987764333322 2379999999999987
Q ss_pred C----CCchhhcCCcccceecccccccCCC----cchhhcCC-CCCcEEECcCCcC
Q 006515 285 G----KIPDQLGTFAKLQLLDLSFNKLTGQ----IPTSLQDL-STLQYLYLGNNNL 331 (642)
Q Consensus 285 ~----~ip~~~~~l~~L~~L~Ls~N~l~g~----~p~~l~~l-~~L~~L~L~~N~l 331 (642)
. .+...+..+++|+.|++++|.+... +...+... +.|++|++.+|.+
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 3 2445666778999999999999855 44444444 7899999988864
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=5.7e-20 Score=182.75 Aligned_cols=255 Identities=24% Similarity=0.280 Sum_probs=153.3
Q ss_pred CEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeec-ccCCCCCchhhcCCCCCCEEEecc
Q 006515 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS-NNFFGPLPKELGKLTSLQQLYIDS 184 (642)
Q Consensus 106 ~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~ 184 (642)
..++|..|.|+...|.+|+.+++|+.||||+|.|+-+-|+.|.++++|..|-+.+ |+++......|++|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4455555555543444455555555555555555555555555555554444444 444433233455555555555555
Q ss_pred CCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCC-----------------------------
Q 006515 185 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL----------------------------- 235 (642)
Q Consensus 185 n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l----------------------------- 235 (642)
|++.....+.|..+++|..|.+.+|.+...--..+..+..++.+.+..|.+
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 555555555555555555555555555422222444455555555544442
Q ss_pred -------CCCchhhhhcCCCCCeE----EcCCCCCCCCchhhhhcCCCCCeeecccccCCCCCchhhcCCcccceecccc
Q 006515 236 -------EGPIPRSFRALNKLEDL----RIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSF 304 (642)
Q Consensus 236 -------~~~~p~~~~~l~~L~~L----~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~ 304 (642)
...-+..|.. .++.+ ...++.....+...|..+++|++|+|++|++++.-+.+|.....++.|.|..
T Consensus 230 rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred HHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 1111111111 11111 1111122222445688899999999999999988888999999999999999
Q ss_pred cccCCCcchhhcCCCCCcEEECcCCcCCCCCCcccC-CCCccEEEccCCcCCccCCccc
Q 006515 305 NKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPLSGNLPRNF 362 (642)
Q Consensus 305 N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~-~~~L~~L~Ls~N~l~g~ip~~~ 362 (642)
|++...--..|.++..|+.|+|.+|+++..-|..+. +.+|.+|+|-.|++.+..--.|
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH
Confidence 999855555678899999999999999977776664 6789999999999887655333
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=1.2e-19 Score=160.89 Aligned_cols=161 Identities=28% Similarity=0.509 Sum_probs=109.1
Q ss_pred CceeEEEEeCCCCCCCCchhhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEe
Q 006515 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (642)
Q Consensus 79 ~~v~~L~l~~~~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L 158 (642)
.++++|.|+.+.++ .+|+.+++|.+|++|++++|++. .+|.+++++++|+.|+++-|++. .+|..|+.++.|+.|||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 35667777776664 45666777777777777777776 66777777777777777777766 66777777777777777
Q ss_pred ecccCC-CCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCC
Q 006515 159 SSNNFF-GPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (642)
Q Consensus 159 ~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~ 237 (642)
.+|++. ..+|..|..+..|+.|+|++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|.+.+|+++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence 777665 345666666666777777777766 56666777777777777777665 56666777777777777777666
Q ss_pred Cchhhhhc
Q 006515 238 PIPRSFRA 245 (642)
Q Consensus 238 ~~p~~~~~ 245 (642)
.+|..+++
T Consensus 187 vlppel~~ 194 (264)
T KOG0617|consen 187 VLPPELAN 194 (264)
T ss_pred ecChhhhh
Confidence 34444443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=2.9e-19 Score=177.71 Aligned_cols=242 Identities=22% Similarity=0.197 Sum_probs=189.9
Q ss_pred CCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEEEecc-CCCCCCCchhhcCCCCCcEEEe
Q 006515 128 NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS-SGVTGSIPQEFANLKSLRILWA 206 (642)
Q Consensus 128 ~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L 206 (642)
.-..++|..|+|+..-|..|+.+++|+.|||++|+++..-|..|..+++|..|-+.+ |+++...-..|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 467899999999977778899999999999999999999999999999998887766 8888655578999999999999
Q ss_pred cCCcCCCCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCCC------------chhhhh------
Q 006515 207 SDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS------------TLDFLE------ 268 (642)
Q Consensus 207 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~------------~~~~l~------ 268 (642)
.-|++.-...+.+..+++|..|.+..|.+...-..+|..+..++.+++..|.+... .+..++
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 99999988889999999999999999998854444888899999998877652110 000011
Q ss_pred -------------------cCCCCCeeecccccCCCCCch-hhcCCcccceecccccccCCCcchhhcCCCCCcEEECcC
Q 006515 269 -------------------SQKSLSILSLRNCRVSGKIPD-QLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGN 328 (642)
Q Consensus 269 -------------------~~~~L~~L~L~~n~l~~~ip~-~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~ 328 (642)
.+..+..--.+.+...+.-|. .|..+++|+.|+|++|++++.-+.+|..+..+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 111121112233334445554 588999999999999999999999999999999999999
Q ss_pred CcCCCCCCccc--CCCCccEEEccCCcCCccCCccccC-CCceee
Q 006515 329 NNLSGELPVNI--IAPNLIALDVSYNPLSGNLPRNFAK-GGLSMK 370 (642)
Q Consensus 329 N~l~g~~p~~~--~~~~L~~L~Ls~N~l~g~ip~~~~~-~~l~~~ 370 (642)
|++.. +-... .+..|+.|+|.+|+++..-|..|.. ..|..+
T Consensus 308 N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 308 NKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred chHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence 99862 32222 3689999999999999888877765 555443
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.6e-19 Score=158.78 Aligned_cols=159 Identities=30% Similarity=0.485 Sum_probs=135.4
Q ss_pred hcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCC
Q 006515 99 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (642)
Q Consensus 99 l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 178 (642)
+.++.+++.|.||+|.++ .+|+.+..+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 566778888999999998 67778999999999999999998 88999999999999999999987 7899999999999
Q ss_pred EEEeccCCCCC-CCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCC
Q 006515 179 QLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL 257 (642)
Q Consensus 179 ~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~ 257 (642)
.|||++|++.. .+|..|..+..|+.|+|++|.|. .+|..++++++|+.|.+..|.+- .+|..++.+..|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999998875 57888888888999999999887 77888899999999998888876 67778888777777777766
Q ss_pred CCCCC
Q 006515 258 SAEDS 262 (642)
Q Consensus 258 ~~~~~ 262 (642)
.++..
T Consensus 184 rl~vl 188 (264)
T KOG0617|consen 184 RLTVL 188 (264)
T ss_pred eeeec
Confidence 55443
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.66 E-value=6.5e-16 Score=173.81 Aligned_cols=157 Identities=29% Similarity=0.496 Sum_probs=114.3
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCC--CCCCCCCCCCCC-CCCCCCCCCCCCeEeecCCC--CCceeEEEEeCCCCCCCCch
Q 006515 23 QTSTDSAEVDALNKLIDYWNLRS--KINLTTIDPCTR-NASWASENANPRVACDCTSN--SCHITHLKIYALDIMGELPS 97 (642)
Q Consensus 23 ~~~~~~~~~~aL~~~~~~~~~~~--~w~~~~~d~C~~-~~~w~~~~~~~gv~C~~~~~--~~~v~~L~l~~~~l~g~ip~ 97 (642)
+..+.++|++||+.+|+.+..+. +|+ .|||.. ...| .||.|..... ...|+.|+|.++.+.|.+|+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~~~W~---g~~C~p~~~~w------~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~ 436 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLRFGWN---GDPCVPQQHPW------SGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN 436 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcccCCCC---CCCCCCccccc------ccceeeccCCCCceEEEEEECCCCCccccCCH
Confidence 44567889999999999987653 675 477752 1246 7999963221 23577888888888888888
Q ss_pred hhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCC-CC
Q 006515 98 ELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKL-TS 176 (642)
Q Consensus 98 ~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~ 176 (642)
.+.++++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++++++|++|+|++|+++|.+|..+..+ .+
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~ 516 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence 88888888888888888877788777778888888888888877777777777777777777777777777776553 34
Q ss_pred CCEEEeccCCCC
Q 006515 177 LQQLYIDSSGVT 188 (642)
Q Consensus 177 L~~L~Ls~n~l~ 188 (642)
+..+++.+|...
T Consensus 517 ~~~l~~~~N~~l 528 (623)
T PLN03150 517 RASFNFTDNAGL 528 (623)
T ss_pred CceEEecCCccc
Confidence 556666665543
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.56 E-value=1.4e-14 Score=163.01 Aligned_cols=111 Identities=31% Similarity=0.498 Sum_probs=89.8
Q ss_pred CCChHHHhhhcccCC---cceeeccccCC-ceEEEEEEEEEeEecCCCCcccccceEEEEEEcCeEecccCchhhhhCCC
Q 006515 458 TLDSELYKTARISPS---SLRYYGLGLEN-GKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGS 533 (642)
Q Consensus 458 ~~~~~ly~t~r~~~~---~l~~~~~~~~~-g~y~v~lhF~e~~~~~~~~~~~~g~r~F~V~i~~~~~~~~~di~~~~~~~ 533 (642)
..|+.+|+|||.... +++ |.+++++ |.|.|||||||+... ....++|+|||||||+.+.++|||..++|+.
T Consensus 249 ~~P~~VyqTA~~~~~~~~~lt-y~~~v~~~~~Y~VrLhFaEi~~~----~~~~~~R~F~V~ing~~~~~~~di~~~~g~~ 323 (623)
T PLN03150 249 FYPESLYQSALVSTDTQPDLS-YTMDVDPNRNYSVWLHFAEIDNS----ITAEGKRVFDVLINGDTAFKDVDIVKMSGER 323 (623)
T ss_pred cChHHHhhhhccccCCCCceE-EEeecCCCCCEEEEEEEEeccCc----cCCCceEEEEEEECCEEeecccChhhhcCCc
Confidence 568899999998653 455 6778865 699999999999621 2345899999999999999999999988877
Q ss_pred CceEEEEEEEEecCCeEEEEEEecCCCCccccCCcccCceEeeEEEEecc
Q 006515 534 KRALVKTFEANVTNTIIEIHFFWAGKGTCCIPFQGTYGPLVSAIHASQVS 583 (642)
Q Consensus 534 ~~~~~~~~~v~v~~~~l~i~~~~~~~g~~~~~~~~~~~~~ln~iei~~~~ 583 (642)
.+|++++|.+.++++.++|+| +|. .+. .|+|||||||++.
T Consensus 324 ~~~~~~~~~v~~~~g~l~isl-----~p~----~~s-~pilNaiEI~~~~ 363 (623)
T PLN03150 324 YTALVLNKTVAVSGRTLTIVL-----QPK----KGT-HAIINAIEVFEII 363 (623)
T ss_pred ccceEEEeEEeecCCeEEEEE-----eeC----CCC-cceeeeeeeeecc
Confidence 899999999999888788887 232 222 4999999999854
No 26
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.44 E-value=4.1e-13 Score=140.25 Aligned_cols=114 Identities=27% Similarity=0.427 Sum_probs=82.9
Q ss_pred cccCCChHHHhhhcccCCc---cee-eccccCCc-eEEEEEEEEEeEecCCCCcccccceEEEEEEcCeEecccCchhhh
Q 006515 455 ITGTLDSELYKTARISPSS---LRY-YGLGLENG-KYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKE 529 (642)
Q Consensus 455 i~g~~~~~ly~t~r~~~~~---l~~-~~~~~~~g-~y~v~lhF~e~~~~~~~~~~~~g~r~F~V~i~~~~~~~~~di~~~ 529 (642)
.....|.++|+|||..... +.+ |.+ ++++ .|.||||||||... ....++|+|+|||||+.+.++++.. .
T Consensus 228 ~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~----~~~~~~R~F~IyiN~~~~~~~~~~~-~ 301 (347)
T PF12819_consen 228 NPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSL----SPNNNQREFDIYINGQTAYSDVSPP-Y 301 (347)
T ss_pred ccCcChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccc----cCCCCeEEEEEEECCeEccCccCcc-c
Confidence 3447899999999974321 222 888 8887 89999999999722 1345689999999999998744432 3
Q ss_pred hCCCCceEEEEEEEEecCCe-EEEEEEecCCCCccccCCcccCceEeeEEEEec
Q 006515 530 AGGSKRALVKTFEANVTNTI-IEIHFFWAGKGTCCIPFQGTYGPLVSAIHASQV 582 (642)
Q Consensus 530 ~~~~~~~~~~~~~v~v~~~~-l~i~~~~~~~g~~~~~~~~~~~~~ln~iei~~~ 582 (642)
.++...|+++||++.++++. +.|+ +++... ..++|+|||+|||++
T Consensus 302 ~~~~~~~~~~d~~~~~~~~~~~~is-----L~~t~~---S~lppiLNalEIy~v 347 (347)
T PF12819_consen 302 LGADTVPYYSDYVVNVPDSGFLNIS-----LGPTPD---STLPPILNALEIYKV 347 (347)
T ss_pred ccCcceEeecceEEEecCCCEEEEE-----EEeCCC---CCcCceeEeeeeEeC
Confidence 34467889999999998754 4444 454432 234899999999984
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.6e-13 Score=142.96 Aligned_cols=196 Identities=28% Similarity=0.406 Sum_probs=136.0
Q ss_pred CCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEE
Q 006515 101 MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 180 (642)
Q Consensus 101 ~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 180 (642)
.+..-...||+.|.+. ++|..+..+-.|+.+.|.+|.+. .+|..+.++..|.+|||+.|+++ .+|..+..|+ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3445566788888887 77877777778888888888877 77888888888888888888877 5677777665 7788
Q ss_pred EeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCC
Q 006515 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 260 (642)
Q Consensus 181 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~ 260 (642)
.+++|+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..|
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-------------- 211 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-------------- 211 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC--------------
Confidence 88887777 66777777777778888877776 56667777777777777777766 344444322
Q ss_pred CCchhhhhcCCCCCeeecccccCCCCCchhhcCCcccceecccccccCCCcchhh---cCCCCCcEEECcCCc
Q 006515 261 DSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL---QDLSTLQYLYLGNNN 330 (642)
Q Consensus 261 ~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l---~~l~~L~~L~L~~N~ 330 (642)
.|..||++.|+++ .||-.|..|+.|++|-|.+|.|. ..|..+ +...-.++|+..-++
T Consensus 212 -----------pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 212 -----------PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -----------ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 3556666666666 66777777777777777777776 344433 223334556555553
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=5.2e-12 Score=135.72 Aligned_cols=181 Identities=33% Similarity=0.518 Sum_probs=83.7
Q ss_pred cCCCCCcEEEeecccCCCCCchhhcCCC-CCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCccccc
Q 006515 148 GNLTKLISLSFSSNNFFGPLPKELGKLT-SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA 226 (642)
Q Consensus 148 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~ 226 (642)
..++.++.|++.+|+++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|...+.+++|+
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 33444555555555554 3343444442 5555555555554 33344555555555555555555 3343333455555
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCCchhhcCCcccceecccccc
Q 006515 227 DLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNK 306 (642)
Q Consensus 227 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~ 306 (642)
.|++++|++. .+|.....+..|++|.+++|... ..+..+.++.++..+.+.+|++. .++..++.+++|+.|++++|+
T Consensus 190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred heeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccc
Confidence 5555555554 33333333333444444433210 11222333344444444444443 224444455555555555555
Q ss_pred cCCCcchhhcCCCCCcEEECcCCcCCCCCC
Q 006515 307 LTGQIPTSLQDLSTLQYLYLGNNNLSGELP 336 (642)
Q Consensus 307 l~g~~p~~l~~l~~L~~L~L~~N~l~g~~p 336 (642)
++ .++. ++.+.+|+.|++++|.++...|
T Consensus 267 i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 267 IS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cc-cccc-ccccCccCEEeccCccccccch
Confidence 55 3332 4455555555555555554444
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=5.9e-12 Score=135.32 Aligned_cols=200 Identities=30% Similarity=0.426 Sum_probs=151.7
Q ss_pred EEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCC-CCcEEEeecccCCCCCchhhcCCCCCCEEEeccC
Q 006515 107 DLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLT-KLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 185 (642)
Q Consensus 107 ~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 185 (642)
.|+++.|.+. ..+..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 5777777664 23344566678888888888888 6777777774 8888888888886 56667788888888888888
Q ss_pred CCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCCCchh
Q 006515 186 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLD 265 (642)
Q Consensus 186 ~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~ 265 (642)
+++ .+|...+.+++|+.|++++|++. .+|..+.....|++|.+++|... .++..+.++.++..|.+.+|..... +.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 888 56666657888888888888888 66766666677888888888533 4556677888888888777655432 45
Q ss_pred hhhcCCCCCeeecccccCCCCCchhhcCCcccceecccccccCCCcchhh
Q 006515 266 FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL 315 (642)
Q Consensus 266 ~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l 315 (642)
.+..++++++|++++|.++ .++. ++.+.+|+.|++++|.+....|...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 250 SIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 5677788999999999988 4444 7888999999999999986666543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=2.7e-13 Score=141.26 Aligned_cols=194 Identities=26% Similarity=0.414 Sum_probs=161.7
Q ss_pred ceeEEEEeCCCCCCCCchhhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEee
Q 006515 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (642)
Q Consensus 80 ~v~~L~l~~~~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~ 159 (642)
..+..+++.|.+. ++|..+..+..|+.|.|+.|.+. .+|..++++..|.+|||+.|+++ .+|..+..|+ |+.|.++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3455666666664 78888888889999999999998 89999999999999999999998 7888888876 8999999
Q ss_pred cccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCc
Q 006515 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (642)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~ 239 (642)
+|+++ .+|..++.+..|..|+.+.|++. .+|..++.+.+|+.|.+..|++. .+|+.+..|+ |..||++.|+++ .+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ec
Confidence 99987 78889999999999999999998 68888999999999999999998 6777777554 889999999998 78
Q ss_pred hhhhhcCCCCCeEEcCCCCCCCCchhh--hhcCCCCCeeeccccc
Q 006515 240 PRSFRALNKLEDLRIGDLSAEDSTLDF--LESQKSLSILSLRNCR 282 (642)
Q Consensus 240 p~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~L~~n~ 282 (642)
|-.|.+++.|++|.|.+|.+...+... -+...-.++|+..-++
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 999999999999999988776543222 1233344566666653
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=1.7e-11 Score=121.37 Aligned_cols=88 Identities=23% Similarity=0.356 Sum_probs=36.8
Q ss_pred hhcCCCCCeeecccccCCCC----CchhhcCCcccceecccccccCCCcchhh-----cCCCCCcEEECcCCcCCCCCCc
Q 006515 267 LESQKSLSILSLRNCRVSGK----IPDQLGTFAKLQLLDLSFNKLTGQIPTSL-----QDLSTLQYLYLGNNNLSGELPV 337 (642)
Q Consensus 267 l~~~~~L~~L~L~~n~l~~~----ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l-----~~l~~L~~L~L~~N~l~g~~p~ 337 (642)
+..+++|+.|||.+|.++-. +...+..+++|+.|++++|.+...-...+ ...|+|++|.|.+|.++-.--.
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 33444444444444444322 12223334445555555554443211111 1234555555555554421110
Q ss_pred cc-----CCCCccEEEccCCcC
Q 006515 338 NI-----IAPNLIALDVSYNPL 354 (642)
Q Consensus 338 ~~-----~~~~L~~L~Ls~N~l 354 (642)
.+ ..+.|..|+|++|.+
T Consensus 289 ~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhcchhhHHhcCCcccc
Confidence 00 134555566666655
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=3e-11 Score=119.68 Aligned_cols=233 Identities=18% Similarity=0.196 Sum_probs=122.6
Q ss_pred ceeEEEEeCCCCCC----CCchhhcCCCCCCEEEccCCC---CCCCCchh-------hcCCCCCcEEEcccCCCCCCCCc
Q 006515 80 HITHLKIYALDIMG----ELPSELFMLRKLMDLNLGQNV---LNGSIPAE-------IGQLSNMQYLSLGINNFTGRVPT 145 (642)
Q Consensus 80 ~v~~L~l~~~~l~g----~ip~~l~~l~~L~~L~Ls~n~---l~g~~p~~-------l~~l~~L~~L~Ls~n~l~g~ip~ 145 (642)
.++.|+|++|.+.- .+.+.+.+.++|+..++++-. +...+|+. +-.+++|++||||+|.|.-.-+.
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 46777887777643 245566777777777777631 22234443 34556777777777777533332
Q ss_pred c----ccCCCCCcEEEeecccCCCCCchh-------------hcCCCCCCEEEeccCCCCCCC----chhhcCCCCCcEE
Q 006515 146 E----LGNLTKLISLSFSSNNFFGPLPKE-------------LGKLTSLQQLYIDSSGVTGSI----PQEFANLKSLRIL 204 (642)
Q Consensus 146 ~----l~~l~~L~~L~L~~n~l~~~~p~~-------------l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L 204 (642)
. +..+..|++|.|.+|.+...--.. ..+-++|+++..++|++.... ...|...+.|+.+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev 190 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV 190 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence 2 345677777777777653111111 122345555555555554221 1223444555555
Q ss_pred EecCCcCCCCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCCC----chhhhhcCCCCCeeeccc
Q 006515 205 WASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS----TLDFLESQKSLSILSLRN 280 (642)
Q Consensus 205 ~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~ 280 (642)
.+..|.+...--. .+...+..+++|+.|+|.+|.++.. ....+..+++|+.|++++
T Consensus 191 r~~qN~I~~eG~~--------------------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 191 RLSQNGIRPEGVT--------------------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred EEecccccCchhH--------------------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 5555544311000 1122344445555555555443322 112344455666666666
Q ss_pred ccCCCCCchhh-----cCCcccceecccccccCCC----cchhhcCCCCCcEEECcCCcCC
Q 006515 281 CRVSGKIPDQL-----GTFAKLQLLDLSFNKLTGQ----IPTSLQDLSTLQYLYLGNNNLS 332 (642)
Q Consensus 281 n~l~~~ip~~~-----~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~L~~N~l~ 332 (642)
|.+...-...+ ...++|++|.|.+|.++-. +-..+...+.|..|+|+.|.+.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 66654433322 2356777777777776632 2233455677777888888773
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.4e-11 Score=123.39 Aligned_cols=208 Identities=23% Similarity=0.222 Sum_probs=120.2
Q ss_pred cCCCCCcEEEcccCCCCCCCC--ccccCCCCCcEEEeecccCCCCCc--hhhcCCCCCCEEEeccCCCCCCCchh-hcCC
Q 006515 124 GQLSNMQYLSLGINNFTGRVP--TELGNLTKLISLSFSSNNFFGPLP--KELGKLTSLQQLYIDSSGVTGSIPQE-FANL 198 (642)
Q Consensus 124 ~~l~~L~~L~Ls~n~l~g~ip--~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l 198 (642)
.++.+|+.+.|.++... ..+ .....|++++.|||+.|-+..-.| .....|++|+.|+|+.|.+....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45566666666666554 222 234556666666666665542211 22345666666666666665332211 1245
Q ss_pred CCCcEEEecCCcCCCC-CchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCCCc-hhhhhcCCCCCee
Q 006515 199 KSLRILWASDNLFTGK-IPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDST-LDFLESQKSLSIL 276 (642)
Q Consensus 199 ~~L~~L~L~~n~l~g~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L 276 (642)
+.|+.|.|+.|.++-. +-..+..+++|+.|+|..|..-+.--.....+..|+.|+|++|++.... ....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 5666677777666521 2223345666777777776422222233444566777777776655443 3445667777777
Q ss_pred ecccccCCCC-Cchh-----hcCCcccceecccccccCCCcc--hhhcCCCCCcEEECcCCcCCC
Q 006515 277 SLRNCRVSGK-IPDQ-----LGTFAKLQLLDLSFNKLTGQIP--TSLQDLSTLQYLYLGNNNLSG 333 (642)
Q Consensus 277 ~L~~n~l~~~-ip~~-----~~~l~~L~~L~Ls~N~l~g~~p--~~l~~l~~L~~L~L~~N~l~g 333 (642)
+++.+.+... +|+. ...+++|+.|+++.|++. ..+ ..+..+++|+.|.+..|.++.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 7777777643 2332 345688999999999885 232 234556778888888888764
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.2e-11 Score=121.72 Aligned_cols=207 Identities=21% Similarity=0.170 Sum_probs=148.2
Q ss_pred cCCCCCcEEEeecccCCCCCc--hhhcCCCCCCEEEeccCCCCCCCc--hhhcCCCCCcEEEecCCcCCCCCchh-ccCc
Q 006515 148 GNLTKLISLSFSSNNFFGPLP--KELGKLTSLQQLYIDSSGVTGSIP--QEFANLKSLRILWASDNLFTGKIPEF-FGTL 222 (642)
Q Consensus 148 ~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~g~~p~~-l~~l 222 (642)
+++.+|+...|.++... ..+ .....|++++.|||+.|-+....| .....|++|+.|+|+.|++.-...+. -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 56889999999988775 223 356779999999999998885433 44578999999999999987433222 2357
Q ss_pred ccccEEEccCCCCCC-CchhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCC-chhhcCCccccee
Q 006515 223 TELADLRLQGTLLEG-PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI-PDQLGTFAKLQLL 300 (642)
Q Consensus 223 ~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~i-p~~~~~l~~L~~L 300 (642)
+.|+.|.|+.|.++. .+-..+..+++|+.|.+..|............++.|++|||++|++-..- -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 789999999999883 23445566789999999888643333344455678899999999876322 1345778889999
Q ss_pred cccccccCCC-cchh-----hcCCCCCcEEECcCCcCCCCCCc---ccCCCCccEEEccCCcCCc
Q 006515 301 DLSFNKLTGQ-IPTS-----LQDLSTLQYLYLGNNNLSGELPV---NIIAPNLIALDVSYNPLSG 356 (642)
Q Consensus 301 ~Ls~N~l~g~-~p~~-----l~~l~~L~~L~L~~N~l~g~~p~---~~~~~~L~~L~Ls~N~l~g 356 (642)
+++.+.+... .|+. ...+++|++|++..|++. ..+. ...+++|+.|....|.|+-
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 9998887743 3333 345788999999999885 2331 1135677777777887763
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=4.4e-10 Score=129.63 Aligned_cols=105 Identities=30% Similarity=0.389 Sum_probs=57.1
Q ss_pred CCCEEEccCCC--CCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEEE
Q 006515 104 KLMDLNLGQNV--LNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 181 (642)
Q Consensus 104 ~L~~L~Ls~n~--l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 181 (642)
.|+.|-+..|. +.-..+..|..++.|++|||++|.--+.+|..+++|-+|++|+|++..+. .+|..+.+|..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555555553 33222233555666666666655544456666666666666666665555 5566666666666666
Q ss_pred eccCCCCCCCchhhcCCCCCcEEEecCC
Q 006515 182 IDSSGVTGSIPQEFANLKSLRILWASDN 209 (642)
Q Consensus 182 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 209 (642)
+..+.....+|.....|++|++|.+...
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 6555544444444555566666655443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=5.3e-10 Score=104.11 Aligned_cols=107 Identities=28% Similarity=0.437 Sum_probs=25.9
Q ss_pred CCCCCCEEEccCCCCCCCCchhhc-CCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhh-cCCCCCC
Q 006515 101 MLRKLMDLNLGQNVLNGSIPAEIG-QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKEL-GKLTSLQ 178 (642)
Q Consensus 101 ~l~~L~~L~Ls~n~l~g~~p~~l~-~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~ 178 (642)
+...+++|+|.+|.|+ .+ ..++ .+.+|+.|+|++|.++ .++ .+..+++|++|++++|+++. +++.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 3344566666666655 22 2243 3556666666666665 232 25556666666666666653 32223 2455666
Q ss_pred EEEeccCCCCCCC-chhhcCCCCCcEEEecCCcCC
Q 006515 179 QLYIDSSGVTGSI-PQEFANLKSLRILWASDNLFT 212 (642)
Q Consensus 179 ~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~ 212 (642)
+|++++|++...- -..+..+++|+.|+|.+|.++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666666554311 123344455555555555443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=3.7e-10 Score=109.47 Aligned_cols=131 Identities=23% Similarity=0.250 Sum_probs=75.4
Q ss_pred CCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeec
Q 006515 199 KSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSL 278 (642)
Q Consensus 199 ~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 278 (642)
..|+.|||++|.++ .+.++..-+++++.|+++.|.+... ..+..+++|+.|||++|.+... ..+-..+-++++|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeeh
Confidence 34455555555444 3344444445555555555554421 1244555555555555433321 112234567777888
Q ss_pred ccccCCCCCchhhcCCcccceecccccccCCC-cchhhcCCCCCcEEECcCCcCCCCC
Q 006515 279 RNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQ-IPTSLQDLSTLQYLYLGNNNLSGEL 335 (642)
Q Consensus 279 ~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~-~p~~l~~l~~L~~L~L~~N~l~g~~ 335 (642)
+.|.+. --+.++.+-+|..||+++|++... --..++++|.|+.+.|.+|.+.+..
T Consensus 360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 887764 223456677788888888887632 1235788888999999999888543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=9.1e-10 Score=106.76 Aligned_cols=141 Identities=24% Similarity=0.278 Sum_probs=110.9
Q ss_pred CCCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCCchhh
Q 006515 212 TGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQL 291 (642)
Q Consensus 212 ~g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~ 291 (642)
.|..-..+..+..|+++||++|.++ .+.++..-++.++.|+++.|.+... ..+..+++|+.|||++|.++ .+..+-
T Consensus 273 ~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh 348 (490)
T KOG1259|consen 273 NGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWH 348 (490)
T ss_pred CCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhH
Confidence 4444455667788999999999988 6778888899999999999877653 34778899999999999987 555555
Q ss_pred cCCcccceecccccccCCCcchhhcCCCCCcEEECcCCcCCCC--CCcccCCCCccEEEccCCcCCccC
Q 006515 292 GTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE--LPVNIIAPNLIALDVSYNPLSGNL 358 (642)
Q Consensus 292 ~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~--~p~~~~~~~L~~L~Ls~N~l~g~i 358 (642)
..+-+++.|.|+.|.+. . -+.++.+-+|..||+++|++... +..-..+|-|+.+.|.+|++.+.+
T Consensus 349 ~KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhcCEeeeehhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 66789999999999986 2 24577888999999999998632 111123677899999999998643
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=2.5e-10 Score=123.17 Aligned_cols=243 Identities=28% Similarity=0.345 Sum_probs=121.5
Q ss_pred CCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEE
Q 006515 101 MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 180 (642)
Q Consensus 101 ~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 180 (642)
.+..++.+++..|.+. .+-..+..+++|+.|++.+|++. .+...+..+++|++|+|++|.++... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 3455555556666655 23334566667777777777766 33333566677777777777665432 24555667777
Q ss_pred EeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCc-hhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCC
Q 006515 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259 (642)
Q Consensus 181 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~ 259 (642)
++++|.++.. ..+..+++|+.+++++|.+...-+ . ...+.+|+.+++.+|.+.-.- .+..+..+..+++.+|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence 7777766632 234446666666666666663322 1 345556666666666554211 112222222234444333
Q ss_pred CCCchhhhhcCC--CCCeeecccccCCCCCchhhcCCcccceecccccccCCCcchhhcCCCCCcEEECcCCcCCCC---
Q 006515 260 EDSTLDFLESQK--SLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE--- 334 (642)
Q Consensus 260 ~~~~~~~l~~~~--~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~--- 334 (642)
..... +..+. .|+.+++++|.+. .++..+..+.++..|+++.|++...- .+...+.+..+.+..|.+...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhh
Confidence 22111 11111 2556666666555 23234445556666666666654221 123334444555555554321
Q ss_pred CCc--ccCCCCccEEEccCCcCCcc
Q 006515 335 LPV--NIIAPNLIALDVSYNPLSGN 357 (642)
Q Consensus 335 ~p~--~~~~~~L~~L~Ls~N~l~g~ 357 (642)
... ....+.++.+.+..|+....
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred hccccccccccccccccccCccccc
Confidence 111 11234455555555555443
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=3.9e-09 Score=98.32 Aligned_cols=61 Identities=26% Similarity=0.390 Sum_probs=9.6
Q ss_pred cCCCCCcEEEeecccCCCCCchhhc-CCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCC
Q 006515 148 GNLTKLISLSFSSNNFFGPLPKELG-KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFT 212 (642)
Q Consensus 148 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 212 (642)
.+..++++|+|++|.++. + +.++ .+.+|+.|+|++|.++. + +.+..+++|+.|++++|+++
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC
Confidence 344455566666665542 2 2233 34555555555555552 1 12444445555555555444
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.5e-09 Score=125.22 Aligned_cols=254 Identities=22% Similarity=0.271 Sum_probs=165.2
Q ss_pred cCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCC--CCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCC
Q 006515 100 FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN--FTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSL 177 (642)
Q Consensus 100 ~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~--l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 177 (642)
.+....+...+.+|.+. .++... ..++|+.|-+..|. +.-..+..|..++.|+.|||++|.--+.+|..+++|-+|
T Consensus 520 ~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 33456777888887765 444443 34579999999986 442333447889999999999988888999999999999
Q ss_pred CEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCC--CCCchhhhhcCCCCCeEEcC
Q 006515 178 QQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL--EGPIPRSFRALNKLEDLRIG 255 (642)
Q Consensus 178 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l--~~~~p~~~~~l~~L~~L~l~ 255 (642)
++|+|++..+. .+|..+.+|.+|.+|++..+.....+|.....+.+|++|.+..... +...-..+.++.+|+.+.+.
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999999998 8999999999999999999887767788788899999999977542 22333455666666666654
Q ss_pred CCCCCCCchhhhhcCCCCC----eeecccccCCCCCchhhcCCcccceecccccccCCCcchhhcC------CCCCcEEE
Q 006515 256 DLSAEDSTLDFLESQKSLS----ILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD------LSTLQYLY 325 (642)
Q Consensus 256 ~~~~~~~~~~~l~~~~~L~----~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~------l~~L~~L~ 325 (642)
..+. .....+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++........+... ++++..+.
T Consensus 677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred cchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 3322 1111112222222 2333332222 34556677888888888888876433222111 12222222
Q ss_pred CcCCcCCCCCCcccCCCCccEEEccCCcCCccCC
Q 006515 326 LGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLP 359 (642)
Q Consensus 326 L~~N~l~g~~p~~~~~~~L~~L~Ls~N~l~g~ip 359 (642)
..++..-...-+..+.++|+.|.+..+.....+.
T Consensus 754 ~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 754 ILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred hhccccccccchhhccCcccEEEEecccccccCC
Confidence 2232222222222356888999998887554443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=6.9e-10 Score=119.74 Aligned_cols=219 Identities=26% Similarity=0.261 Sum_probs=146.9
Q ss_pred cCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcE
Q 006515 124 GQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRI 203 (642)
Q Consensus 124 ~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 203 (642)
..+..++.+++..|.+. .+-..+..+++|+.|++.+|++... ...+..+++|++|++++|.++... .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhh
Confidence 45677888889999887 3445578899999999999998743 333778899999999999998553 3567778999
Q ss_pred EEecCCcCCCCCchhccCcccccEEEccCCCCCCCch-hhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeeccccc
Q 006515 204 LWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP-RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCR 282 (642)
Q Consensus 204 L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~ 282 (642)
|++++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.... .+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhccccc
Confidence 99999998733 345558889999999998875443 2 467778888888877655432 22223344444677776
Q ss_pred CCCCCchhhcCCc--ccceecccccccCCCcchhhcCCCCCcEEECcCCcCCCCCCcccCCCCccEEEccCCcCC
Q 006515 283 VSGKIPDQLGTFA--KLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLS 355 (642)
Q Consensus 283 l~~~ip~~~~~l~--~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~~~L~~L~Ls~N~l~ 355 (642)
++..-+ +..+. .|+.+++++|.+. .++..+..+..+..|++.+|++...-. ......+..+.+..|.+.
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLA 290 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc-ccccchHHHhccCcchhc
Confidence 653222 11222 3778888888876 444556667777777777777763221 112344445555555544
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.62 E-value=1.7e-08 Score=77.17 Aligned_cols=59 Identities=36% Similarity=0.489 Sum_probs=30.3
Q ss_pred CCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeeccc
Q 006515 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN 162 (642)
Q Consensus 104 ~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~ 162 (642)
+|++|++++|.++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555553333445555555555555555554444445555555555555554
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=2.1e-08 Score=76.68 Aligned_cols=61 Identities=39% Similarity=0.588 Sum_probs=47.5
Q ss_pred CCCCeeecccccCCCCCchhhcCCcccceecccccccCCCcchhhcCCCCCcEEECcCCcC
Q 006515 271 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331 (642)
Q Consensus 271 ~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l 331 (642)
++|++|+|++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677888888888866566778888888888888888766666778888888888888764
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=9.2e-08 Score=93.10 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=41.4
Q ss_pred CCCCcEEEcccCCCCC--CCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEEEeccCCCCC-CCchhhcCCCCCc
Q 006515 126 LSNMQYLSLGINNFTG--RVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLR 202 (642)
Q Consensus 126 l~~L~~L~Ls~n~l~g--~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~ 202 (642)
.+.++.|||.+|.++. .|-.-+.+||.|+.|+|+.|++...|...-..+.+|+.|-|.+..+.= .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4555666666665542 233334455666666666665553332211234455555555554431 1223344555566
Q ss_pred EEEecCC
Q 006515 203 ILWASDN 209 (642)
Q Consensus 203 ~L~L~~n 209 (642)
.|+++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 6666555
No 46
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.39 E-value=2.6e-06 Score=89.28 Aligned_cols=113 Identities=29% Similarity=0.443 Sum_probs=75.0
Q ss_pred CCChHHHhhhcccCCcc-eeeccccC--Cc-eEEEEEEEEEeEecCCCCccc-ccceEEEEEEcCeEecccCchhhhhCC
Q 006515 458 TLDSELYKTARISPSSL-RYYGLGLE--NG-KYRIDLHFAEITMEDSLSWKG-LGRRVFDVYIQGERVLRDLNIKKEAGG 532 (642)
Q Consensus 458 ~~~~~ly~t~r~~~~~l-~~~~~~~~--~g-~y~v~lhF~e~~~~~~~~~~~-~g~r~F~V~i~~~~~~~~~di~~~~~~ 532 (642)
......|+|+|.++..- .-|.|++. .| +|+||+||.-..+.. ..++. ...-.|+++++.... ...++.. .
T Consensus 45 ~~~~~~y~taR~F~~g~r~cY~l~~~~~~~~~yliRl~F~~gnyd~-~~fs~~~~~~~FdL~~~~n~~-~tV~~~~-~-- 119 (347)
T PF12819_consen 45 SDSSPPYQTARIFPEGSRNCYTLPVTPPGGGKYLIRLHFYYGNYDG-LNFSVSSSPPTFDLLLGFNFW-STVNLSN-S-- 119 (347)
T ss_pred CccccccceEEEcCCCCccEEEeeccCCCCceEEEEEEeccccccc-cccccccCCcceEEEECCcee-EEEEecC-C--
Confidence 34567999999987322 22778775 23 999999997654221 00010 124569999987664 2233322 1
Q ss_pred CCceEEEEEEEEec-CCeEEEEEEecCCCCccccCCcccCceEeeEEEEeccc
Q 006515 533 SKRALVKTFEANVT-NTIIEIHFFWAGKGTCCIPFQGTYGPLVSAIHASQVST 584 (642)
Q Consensus 533 ~~~~~~~~~~v~v~-~~~l~i~~~~~~~g~~~~~~~~~~~~~ln~iei~~~~~ 584 (642)
...+++|+|++.++ ++.+.|.|.-.+.| .+ |+||||||+++-.
T Consensus 120 ~~~~~~~E~ii~v~~~~~l~vclv~~~~g--------~~-pFIsaiEl~~lp~ 163 (347)
T PF12819_consen 120 PSSPVVKEFIINVTWSDTLSVCLVPTGSG--------TF-PFISAIELRPLPD 163 (347)
T ss_pred CcceEEEEEEEEEcCCCcEEEEEEeCCCC--------CC-CceeEEEEEECCc
Confidence 23679999999999 68899998644443 22 9999999999765
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.1e-07 Score=92.49 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=64.9
Q ss_pred CCCCCCEEEccCCCCCC--CCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCC-CCchhhcCCCCC
Q 006515 101 MLRKLMDLNLGQNVLNG--SIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFG-PLPKELGKLTSL 177 (642)
Q Consensus 101 ~l~~L~~L~Ls~n~l~g--~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L 177 (642)
..++++.|||.+|.++. .+-.-+.+||.|++|+|+.|++...|-..-..+.+|+.|.|.+..+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46788999999998874 344556789999999999999885443221456789999998877752 234556778889
Q ss_pred CEEEeccCCC
Q 006515 178 QQLYIDSSGV 187 (642)
Q Consensus 178 ~~L~Ls~n~l 187 (642)
++|+++.|++
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 9999888844
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.6e-08 Score=95.92 Aligned_cols=176 Identities=21% Similarity=0.197 Sum_probs=105.6
Q ss_pred CCcEEEeecccCCC-CCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCc-CCCC-CchhccCcccccEE
Q 006515 152 KLISLSFSSNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL-FTGK-IPEFFGTLTELADL 228 (642)
Q Consensus 152 ~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~g~-~p~~l~~l~~L~~L 228 (642)
.||+|||++..++. .+-..+..+.+|+.|.|.++++...+-..+++-.+|+.|+|+.+. ++.. ..-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46777777665542 122234556677777777777776666667777777777776543 2211 11234567777777
Q ss_pred EccCCCCCCCchh-hhhc-CCCCCeEEcCCCCCC--CCchhh-hhcCCCCCeeeccccc-CCCCCchhhcCCcccceecc
Q 006515 229 RLQGTLLEGPIPR-SFRA-LNKLEDLRIGDLSAE--DSTLDF-LESQKSLSILSLRNCR-VSGKIPDQLGTFAKLQLLDL 302 (642)
Q Consensus 229 ~L~~n~l~~~~p~-~~~~-l~~L~~L~l~~~~~~--~~~~~~-l~~~~~L~~L~L~~n~-l~~~ip~~~~~l~~L~~L~L 302 (642)
+|+.+.+..+.-. .+.+ -++|..|+|+++.-. ...... ...+++|..|||++|. ++...-..|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7777766644322 1122 246677777765221 112222 2457788888888764 33333345667888888888
Q ss_pred cccccCCCcchh---hcCCCCCcEEECcCC
Q 006515 303 SFNKLTGQIPTS---LQDLSTLQYLYLGNN 329 (642)
Q Consensus 303 s~N~l~g~~p~~---l~~l~~L~~L~L~~N 329 (642)
+.|.. .+|.. +...|+|.+|++.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 88764 45554 456788888888654
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.28 E-value=7e-08 Score=83.55 Aligned_cols=132 Identities=23% Similarity=0.312 Sum_probs=96.8
Q ss_pred ccEEEccCCCCCCCchhhhhcC---CCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCCchhhcCCcccceec
Q 006515 225 LADLRLQGTLLEGPIPRSFRAL---NKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLD 301 (642)
Q Consensus 225 L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~ 301 (642)
+-.++|++|.+- .+++...++ ..|...+|++|.+...+..+-..++.++.|+|++|.++ .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 344556655543 344443333 34555577777777766666677788999999999998 7888899999999999
Q ss_pred ccccccCCCcchhhcCCCCCcEEECcCCcCCCCCCcccCC-CCccEEEccCCcCCccCCc
Q 006515 302 LSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIA-PNLIALDVSYNPLSGNLPR 360 (642)
Q Consensus 302 Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~~p~~~~~-~~L~~L~Ls~N~l~g~ip~ 360 (642)
+++|.+. ..|..+..+.+|.+|+..+|.+. ++|..... +.....++.++++.+..|.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 9999998 67888888999999999999886 66655443 3344556777888877664
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=3.8e-08 Score=105.99 Aligned_cols=196 Identities=26% Similarity=0.270 Sum_probs=119.4
Q ss_pred CCCCcEEEeecccCCCCC-chhhcCCCCCCEEEeccCCCCCCCchhhcCC-CCCcEEEecCCcCC----------CCCch
Q 006515 150 LTKLISLSFSSNNFFGPL-PKELGKLTSLQQLYIDSSGVTGSIPQEFANL-KSLRILWASDNLFT----------GKIPE 217 (642)
Q Consensus 150 l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------g~~p~ 217 (642)
+++++.|.+-.-.-.+.. |-.+..+.+|++|.|.++.+.. -..+..+ ..|++|-- .|.+. |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhcccccc
Confidence 344455544433222222 5567788899999999988763 1111111 12333311 11111 11111
Q ss_pred hccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCCchh-hcCCcc
Q 006515 218 FFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQ-LGTFAK 296 (642)
Q Consensus 218 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~ip~~-~~~l~~ 296 (642)
.+ .+.+|...+.++|.+. .+..++.-++.|+.|+|+.|.+... +.+..++.|+.|||+.|.+. .+|.- ... ..
T Consensus 160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g-c~ 233 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVG-CK 233 (1096)
T ss_pred ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhh-hh
Confidence 11 1345777777888776 5566777788888888888776553 36777888888888888887 44432 222 34
Q ss_pred cceecccccccCCCcchhhcCCCCCcEEECcCCcCCCC--CCcccCCCCccEEEccCCcCCc
Q 006515 297 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE--LPVNIIAPNLIALDVSYNPLSG 356 (642)
Q Consensus 297 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~--~p~~~~~~~L~~L~Ls~N~l~g 356 (642)
|+.|.|++|.++. + ..+.++++|+.|||++|-+.+- +-..+.+..|+.|.|.+|++.+
T Consensus 234 L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 234 LQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred heeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8888888888872 2 2467888888888888887652 2112345677888888888775
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=1.1e-06 Score=84.64 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=84.1
Q ss_pred ceeEEEEeCCCCCCC----CchhhcCCCCCCEEEccCCCC---CCCCch-------hhcCCCCCcEEEcccCCCCCCCCc
Q 006515 80 HITHLKIYALDIMGE----LPSELFMLRKLMDLNLGQNVL---NGSIPA-------EIGQLSNMQYLSLGINNFTGRVPT 145 (642)
Q Consensus 80 ~v~~L~l~~~~l~g~----ip~~l~~l~~L~~L~Ls~n~l---~g~~p~-------~l~~l~~L~~L~Ls~n~l~g~ip~ 145 (642)
.++.++|++|-+..+ +...+.+-++|+..+++.-.. ...+|+ .+-+|++|+..+||.|.|....|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 466777777766433 344555666777777765321 112332 345677777777777777665554
Q ss_pred c----ccCCCCCcEEEeecccCCCCCch-----hh---------cCCCCCCEEEeccCCCCCCCc----hhhcCCCCCcE
Q 006515 146 E----LGNLTKLISLSFSSNNFFGPLPK-----EL---------GKLTSLQQLYIDSSGVTGSIP----QEFANLKSLRI 203 (642)
Q Consensus 146 ~----l~~l~~L~~L~L~~n~l~~~~p~-----~l---------~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~ 203 (642)
. ++.-+.|++|.|++|.+- .+.. .+ .+-|.|+......|++..-.. ..+..-.+|+.
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 3 345667777777777652 2221 11 223566777776666652211 11222245666
Q ss_pred EEecCCcCCCCC-----chhccCcccccEEEccCCCCC
Q 006515 204 LWASDNLFTGKI-----PEFFGTLTELADLRLQGTLLE 236 (642)
Q Consensus 204 L~L~~n~l~g~~-----p~~l~~l~~L~~L~L~~n~l~ 236 (642)
+.+..|.+.-.- -..+..+.+|+.|||+.|-|+
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 666666554210 011234455666666666554
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.9e-08 Score=96.59 Aligned_cols=193 Identities=20% Similarity=0.186 Sum_probs=113.0
Q ss_pred CCcEEEcccCCCCC-CCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEEEeccCC-CCCC-CchhhcCCCCCcEE
Q 006515 128 NMQYLSLGINNFTG-RVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSG-VTGS-IPQEFANLKSLRIL 204 (642)
Q Consensus 128 ~L~~L~Ls~n~l~g-~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L 204 (642)
.|++||||+..++- .+-.-++.+.+|+.|.|.++++...+...+.+-.+|+.|+|+.+. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46777777666652 122234556677777777777766666666666777777776543 3211 11234567777777
Q ss_pred EecCCcCCCCCchh-cc-CcccccEEEccCCCC---CCCchhhhhcCCCCCeEEcCCCCC-CCCchhhhhcCCCCCeeec
Q 006515 205 WASDNLFTGKIPEF-FG-TLTELADLRLQGTLL---EGPIPRSFRALNKLEDLRIGDLSA-EDSTLDFLESQKSLSILSL 278 (642)
Q Consensus 205 ~L~~n~l~g~~p~~-l~-~l~~L~~L~L~~n~l---~~~~p~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~L 278 (642)
+|+.|.++...-.. +. --++|+.|+|+++.- ...+..-....++|.+|||+++.. ...-...+.+++.|++|.|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77777655432111 11 124567777776432 222333345678888888888643 3333455677888999999
Q ss_pred ccccCCCCCchh---hcCCcccceecccccccCCCcchhhcCCCCCc
Q 006515 279 RNCRVSGKIPDQ---LGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQ 322 (642)
Q Consensus 279 ~~n~l~~~ip~~---~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~ 322 (642)
+.|. +.+|.. +...++|.+||+.++-=.+..--....+++|+
T Consensus 346 sRCY--~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 346 SRCY--DIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhc--CCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 8885 356653 46678999999876543322222234455554
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=2.1e-08 Score=107.99 Aligned_cols=110 Identities=21% Similarity=0.219 Sum_probs=61.0
Q ss_pred chhhcCCCCCcEEEcccCCCCCCCCccccCC-CCCcEEEeecccCC----------CCCchhhcCCCCCCEEEeccCCCC
Q 006515 120 PAEIGQLSNMQYLSLGINNFTGRVPTELGNL-TKLISLSFSSNNFF----------GPLPKELGKLTSLQQLYIDSSGVT 188 (642)
Q Consensus 120 p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l-~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~Ls~n~l~ 188 (642)
|-.|..+..|++|.|.++.+.. -..+..+ .+|++|.-. |.+. |.+-.++. .-.|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence 4456677778888888777652 1111111 234444332 2211 11111110 124566666777766
Q ss_pred CCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCC
Q 006515 189 GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (642)
Q Consensus 189 ~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~ 236 (642)
.+..++.-++.|+.|+|++|+++.. +.+..+++|++|||++|.+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc
Confidence 4556666677777777777777643 25666777777777777665
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=5.7e-07 Score=86.62 Aligned_cols=92 Identities=21% Similarity=0.344 Sum_probs=57.7
Q ss_pred hhhcCCCCCCEEEccCCCCCCC----CchhhcCCCCCcEEEcccCCCC---CCCCc-------cccCCCCCcEEEeeccc
Q 006515 97 SELFMLRKLMDLNLGQNVLNGS----IPAEIGQLSNMQYLSLGINNFT---GRVPT-------ELGNLTKLISLSFSSNN 162 (642)
Q Consensus 97 ~~l~~l~~L~~L~Ls~n~l~g~----~p~~l~~l~~L~~L~Ls~n~l~---g~ip~-------~l~~l~~L~~L~L~~n~ 162 (642)
..+..+..+..+|||+|.|... +...+.+-.+|+..+++.-... ..+|+ .+-+|++|+..+||.|-
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3455678889999999988644 3334556677888887764221 22333 23456777777777777
Q ss_pred CCCCCchh----hcCCCCCCEEEeccCCCC
Q 006515 163 FFGPLPKE----LGKLTSLQQLYIDSSGVT 188 (642)
Q Consensus 163 l~~~~p~~----l~~l~~L~~L~Ls~n~l~ 188 (642)
+....|+. +++-+.|.+|.|++|.+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 66555543 344566777777766654
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=2.7e-07 Score=79.93 Aligned_cols=103 Identities=21% Similarity=0.325 Sum_probs=51.5
Q ss_pred CEEEccCCCCCCCCchh---hcCCCCCcEEEcccCCCCCCCCcccc-CCCCCcEEEeecccCCCCCchhhcCCCCCCEEE
Q 006515 106 MDLNLGQNVLNGSIPAE---IGQLSNMQYLSLGINNFTGRVPTELG-NLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 181 (642)
Q Consensus 106 ~~L~Ls~n~l~g~~p~~---l~~l~~L~~L~Ls~n~l~g~ip~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 181 (642)
..+||++|.+- .+++. +.....|...+|++|.+. ..|..|. ..+.++.|+|++|.++ .+|.++..++.|+.|+
T Consensus 30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 34455555443 23333 233344444555555555 3444442 2335555555555554 4555555555566666
Q ss_pred eccCCCCCCCchhhcCCCCCcEEEecCCcCC
Q 006515 182 IDSSGVTGSIPQEFANLKSLRILWASDNLFT 212 (642)
Q Consensus 182 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 212 (642)
++.|.+. ..|..+..|.+|-.|+..+|.+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 6555555 33444444555555555555544
No 56
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=97.87 E-value=1.2e-05 Score=77.60 Aligned_cols=73 Identities=32% Similarity=0.551 Sum_probs=60.7
Q ss_pred CCChHHHhhhcccCCcceeecccc-CCceEEEEEEEEEeEecCCCCcccccceEEEEEEc-CeEecccCchhhhhCCCCc
Q 006515 458 TLDSELYKTARISPSSLRYYGLGL-ENGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQ-GERVLRDLNIKKEAGGSKR 535 (642)
Q Consensus 458 ~~~~~ly~t~r~~~~~l~~~~~~~-~~g~y~v~lhF~e~~~~~~~~~~~~g~r~F~V~i~-~~~~~~~~di~~~~~~~~~ 535 (642)
..+..+|+|+|+....+. |+.+. +.|+|-+-|.|||.+ +...++.+|||.+| +..+.++.||+.++|+.++
T Consensus 105 eed~ily~ter~neetFg-yd~pik~dgdyalvlkfaevy------F~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~ 177 (355)
T KOG3593|consen 105 EEDIILYQTERYNEETFG-YDVPIKEDGDYALVLKFAEVY------FKTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGK 177 (355)
T ss_pred hhhhhhhhhcccchhhhc-ccccccCCCceehhhhHHHHH------HHhhhhhheeeeeccceeEEeccchhhhcCCCcc
Confidence 445679999999866645 55554 458999999999998 67778899999999 9999999999999997776
Q ss_pred eE
Q 006515 536 AL 537 (642)
Q Consensus 536 ~~ 537 (642)
|.
T Consensus 178 Ah 179 (355)
T KOG3593|consen 178 AH 179 (355)
T ss_pred cc
Confidence 53
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=0.00011 Score=76.96 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=33.6
Q ss_pred ccCCCCCcEEEeecccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCC
Q 006515 147 LGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN 209 (642)
Q Consensus 147 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 209 (642)
+..+.+++.|++++|.++ .+|. + ..+|++|.++++.-...+|..+ .++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 334577778888877665 4452 1 2357777777644434555443 246666766666
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=6.4e-05 Score=78.79 Aligned_cols=136 Identities=18% Similarity=0.216 Sum_probs=73.6
Q ss_pred hcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCC
Q 006515 99 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (642)
Q Consensus 99 l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 178 (642)
+..+.+++.|++++|.++ .+|. + -.+|+.|.++++.--..+|..+ .++|++|++++|.....+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445677778888877766 4552 1 1357788877753323556544 25778888887733234553 466
Q ss_pred EEEeccCCCC--CCCchhhcCCCCCcEEEecCCcCC--CCCchhccCcccccEEEccCCCCCCCchhhhhcCCCCCeEEc
Q 006515 179 QLYIDSSGVT--GSIPQEFANLKSLRILWASDNLFT--GKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRI 254 (642)
Q Consensus 179 ~L~Ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~--g~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 254 (642)
.|+++.+... +.+|. +|+.|.+.+++.. ..+|..+ -++|++|++++|... .+|..+. .+|+.|.+
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 6666655432 23333 4556665432211 0111111 146788888777654 2333222 47777777
Q ss_pred CCC
Q 006515 255 GDL 257 (642)
Q Consensus 255 ~~~ 257 (642)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 654
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=3e-05 Score=54.53 Aligned_cols=36 Identities=31% Similarity=0.591 Sum_probs=17.9
Q ss_pred CCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCC
Q 006515 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFT 140 (642)
Q Consensus 104 ~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~ 140 (642)
+|++|++++|.|+ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=3.1e-05 Score=54.44 Aligned_cols=36 Identities=39% Similarity=0.552 Sum_probs=18.9
Q ss_pred CCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCC
Q 006515 128 NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFF 164 (642)
Q Consensus 128 ~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~ 164 (642)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 44545555555555555555554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=5.2e-05 Score=85.93 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=34.4
Q ss_pred CCCCcEEEeecccCCCC-CchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCC-CCchhccCcccccE
Q 006515 150 LTKLISLSFSSNNFFGP-LPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELAD 227 (642)
Q Consensus 150 l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g-~~p~~l~~l~~L~~ 227 (642)
||+|+.|.+++-.+... .-....++++|..||+|+.+++.. ..+++|++|+.|.+.+=.+.. ..-..+.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 45555555554333211 112223445555555555554422 334445555555444433331 11122334444444
Q ss_pred EEccCC
Q 006515 228 LRLQGT 233 (642)
Q Consensus 228 L~L~~n 233 (642)
||+|..
T Consensus 225 LDIS~~ 230 (699)
T KOG3665|consen 225 LDISRD 230 (699)
T ss_pred eecccc
Confidence 444443
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=6.8e-05 Score=85.02 Aligned_cols=138 Identities=24% Similarity=0.264 Sum_probs=88.3
Q ss_pred CCCCEEEccCCCC-CCCCchhhc-CCCCCcEEEcccCCCCCC-CCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCE
Q 006515 103 RKLMDLNLGQNVL-NGSIPAEIG-QLSNMQYLSLGINNFTGR-VPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 179 (642)
Q Consensus 103 ~~L~~L~Ls~n~l-~g~~p~~l~-~l~~L~~L~Ls~n~l~g~-ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 179 (642)
.+|++||+++... ...-|..++ .||.|+.|.+++-.+... .-.-..++++|..||+|+.+++.. ..+++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4678888877532 222333444 478888888887666421 122235678888888888887633 66788888888
Q ss_pred EEeccCCCCC-CCchhhcCCCCCcEEEecCCcCCCCC--ch----hccCcccccEEEccCCCCCCCchhh
Q 006515 180 LYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKI--PE----FFGTLTELADLRLQGTLLEGPIPRS 242 (642)
Q Consensus 180 L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~g~~--p~----~l~~l~~L~~L~L~~n~l~~~~p~~ 242 (642)
|.+.+=.+.. ..-..+.+|++|+.||+|........ .. --..+++|+.||.+++.+...+-+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 8877655553 22235677888888888876554321 11 1134778888888887777655443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.36 E-value=0.00036 Score=65.01 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=38.0
Q ss_pred CCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCC--CCchhhcCCCCCCEEE
Q 006515 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFG--PLPKELGKLTSLQQLY 181 (642)
Q Consensus 104 ~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~ 181 (642)
+...+||++|.+. .+ +.|..+++|.+|.|++|.|+..-|.--..+++|+.|.|.+|++.. .+ .-+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceee
Confidence 3455566666553 11 124455556666666666553333322334555555555555431 11 1133444444444
Q ss_pred eccCCCC
Q 006515 182 IDSSGVT 188 (642)
Q Consensus 182 Ls~n~l~ 188 (642)
+-+|..+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 4444443
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.20 E-value=0.00056 Score=63.74 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=75.7
Q ss_pred CCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEEEeccCCCCCCCc-hhhcCCCCCcEEE
Q 006515 127 SNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILW 205 (642)
Q Consensus 127 ~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ 205 (642)
.+...+||++|.+. .+ ..|..++.|.+|.|.+|+++..-|.--.-+++|+.|.|.+|.+...-. .-+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45778899999876 23 346778889999999999886666544557889999999988763211 2356788999999
Q ss_pred ecCCcCCCCC---chhccCcccccEEEccCC
Q 006515 206 ASDNLFTGKI---PEFFGTLTELADLRLQGT 233 (642)
Q Consensus 206 L~~n~l~g~~---p~~l~~l~~L~~L~L~~n 233 (642)
+-+|..+..- --.+..+++|+.||++.-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 9888776321 123567888999988754
No 65
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.16 E-value=0.00061 Score=47.65 Aligned_cols=36 Identities=33% Similarity=0.605 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCC-C----CCCCCCC-CCCCCCCCCCCCCCCCCCeEee
Q 006515 28 SAEVDALNKLIDYWNL-R----SKINLTT-IDPCTRNASWASENANPRVACD 73 (642)
Q Consensus 28 ~~~~~aL~~~~~~~~~-~----~~w~~~~-~d~C~~~~~w~~~~~~~gv~C~ 73 (642)
++|++||++||+.+.. + .+|+... .+||+ | .||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~----W------~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS----W------SGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC----S------TTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCee----e------ccEEeC
Confidence 5799999999999974 3 7898763 69998 8 799995
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.01 E-value=0.0004 Score=67.38 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=30.9
Q ss_pred CCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecc--cCCCCCchhhcCCCCCCEEEeccCCCC
Q 006515 125 QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN--NFFGPLPKELGKLTSLQQLYIDSSGVT 188 (642)
Q Consensus 125 ~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 188 (642)
.+..|+.|++.+..++. + ..+-.|++|++|.++.| +..+.++.....+++|++|++++|++.
T Consensus 41 ~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444555544444431 1 12334556666666666 444444444444566666666666554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.00045 Score=67.04 Aligned_cols=86 Identities=21% Similarity=0.195 Sum_probs=53.6
Q ss_pred hcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccC--CCCCCCCccccCCCCCcEEEeecccCCCCCchh---hcC
Q 006515 99 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGIN--NFTGRVPTELGNLTKLISLSFSSNNFFGPLPKE---LGK 173 (642)
Q Consensus 99 l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n--~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~ 173 (642)
...+..|+.|++.+..++. + ..+-.|++|++|.++.| ++++.++.-...+++|++|+|++|++.- +.. +..
T Consensus 39 ~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 3344555556655555541 1 12456778888888888 6666666656667888888888888752 222 344
Q ss_pred CCCCCEEEeccCCCC
Q 006515 174 LTSLQQLYIDSSGVT 188 (642)
Q Consensus 174 l~~L~~L~Ls~n~l~ 188 (642)
+.+|..|++.+|..+
T Consensus 115 l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT 129 (260)
T ss_pred hcchhhhhcccCCcc
Confidence 555666666666554
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.63 E-value=0.0052 Score=54.32 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=5.0
Q ss_pred ccCCCCCcEEEeec
Q 006515 147 LGNLTKLISLSFSS 160 (642)
Q Consensus 147 l~~l~~L~~L~L~~ 160 (642)
|.++++|+.+.+.+
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 33444444444433
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.62 E-value=0.0041 Score=54.97 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=50.4
Q ss_pred hhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCC
Q 006515 98 ELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSL 177 (642)
Q Consensus 98 ~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 177 (642)
.+.++++|+.+.+.. .+...-...|..+++|+.+.+.++ +...-...|.++++|+.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 355666777777764 444333445777777888887764 5433334566776777777754 3332223445567777
Q ss_pred CEEEeccCCCCCCCchhhcCCCCCcEEEecC
Q 006515 178 QQLYIDSSGVTGSIPQEFANLKSLRILWASD 208 (642)
Q Consensus 178 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 208 (642)
+.+++..+ +...-...|.++ +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 77777554 332223345554 666666554
No 70
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=96.09 E-value=0.0098 Score=39.99 Aligned_cols=28 Identities=14% Similarity=0.668 Sum_probs=11.8
Q ss_pred ceEEEEeehHHHHHHHHHHHHhhhhccc
Q 006515 597 GKIVGITVGCAAALVIISSVFYLWWTKD 624 (642)
Q Consensus 597 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 624 (642)
.+.+|+++..++.++++++++++||||+
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhheEEecc
Confidence 3444555554443223333333345544
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.77 E-value=0.0019 Score=71.03 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=10.3
Q ss_pred hcCCcccceecccccc
Q 006515 291 LGTFAKLQLLDLSFNK 306 (642)
Q Consensus 291 ~~~l~~L~~L~Ls~N~ 306 (642)
...+++|+.+.+.++.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 4456667777766666
No 72
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=95.51 E-value=0.014 Score=51.88 Aligned_cols=18 Identities=17% Similarity=0.600 Sum_probs=11.9
Q ss_pred ccceEEEEeehHHHHHHH
Q 006515 595 HVGKIVGITVGCAAALVI 612 (642)
Q Consensus 595 ~~~~~~g~~~g~~~~~~~ 612 (642)
.+.+|||++||..+++++
T Consensus 47 nknIVIGvVVGVGg~ill 64 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILL 64 (154)
T ss_pred CccEEEEEEecccHHHHH
Confidence 346889999995544333
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.44 E-value=0.0013 Score=67.81 Aligned_cols=285 Identities=16% Similarity=0.091 Sum_probs=138.3
Q ss_pred CCCeEeecCC-CCCceeEEEEeCCCCCCC--CchhhcCCCCCCEEEccCCC-CCCCCchhh-cCCCCCcEEEcccC-CCC
Q 006515 67 NPRVACDCTS-NSCHITHLKIYALDIMGE--LPSELFMLRKLMDLNLGQNV-LNGSIPAEI-GQLSNMQYLSLGIN-NFT 140 (642)
Q Consensus 67 ~~gv~C~~~~-~~~~v~~L~l~~~~l~g~--ip~~l~~l~~L~~L~Ls~n~-l~g~~p~~l-~~l~~L~~L~Ls~n-~l~ 140 (642)
..+|.|.... -.+++++|.+.++.-.+. +-....+++++++|++.++. ++...-..+ ..+++|++|+|..| .++
T Consensus 125 ~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 125 DGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred CCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH
Confidence 3456654321 124678888777643332 22334567888888888874 332222223 35788888888874 333
Q ss_pred CCCCccc-cCCCCCcEEEeecccC-CCC-CchhhcCCCCCCEEEeccCCCCCCCchhh----cCCCCCcEEEecCCc-CC
Q 006515 141 GRVPTEL-GNLTKLISLSFSSNNF-FGP-LPKELGKLTSLQQLYIDSSGVTGSIPQEF----ANLKSLRILWASDNL-FT 212 (642)
Q Consensus 141 g~ip~~l-~~l~~L~~L~L~~n~l-~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~L~~n~-l~ 212 (642)
...-..+ ..+++|++|+++.+.- ++. +......+..|+.+.+.+|.=.+ -+.+ +.+..+..+++.++. ++
T Consensus 205 ~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 205 DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhcccc
Confidence 2222212 3577888888887642 221 12223445556666555432111 1111 123334455544442 22
Q ss_pred CCC-chhccCcccccEEEccCCCCCCCch-hhh-hcCCCCCeEEcCCCCC-CCCchhhh-hcCCCCCeeecccccCCC--
Q 006515 213 GKI-PEFFGTLTELADLRLQGTLLEGPIP-RSF-RALNKLEDLRIGDLSA-EDSTLDFL-ESQKSLSILSLRNCRVSG-- 285 (642)
Q Consensus 213 g~~-p~~l~~l~~L~~L~L~~n~l~~~~p-~~~-~~l~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~~L~L~~n~l~~-- 285 (642)
..- -..-..+..|+.|+.+++...+..+ ..+ .+..+|+.|-+..++. +......+ .+.+.|+.+++..+...-
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 110 0111245567777776654432211 222 3456777777766642 11111112 345667777776664321
Q ss_pred CCchhhcCCcccceecccccccCCCc-----chhhcCCCCCcEEECcCCcCCCCCCccc--CCCCccEEEccCCc
Q 006515 286 KIPDQLGTFAKLQLLDLSFNKLTGQI-----PTSLQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNP 353 (642)
Q Consensus 286 ~ip~~~~~l~~L~~L~Ls~N~l~g~~-----p~~l~~l~~L~~L~L~~N~l~g~~p~~~--~~~~L~~L~Ls~N~ 353 (642)
.+-..-.+++.|+.|.|+++.+.... -..-..+..|+.+.|+++..+..--... .+++|+.+++-+++
T Consensus 363 tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 363 TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 12222234567777777766543111 1111234556666666665542211111 24555555555554
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.16 E-value=0.0042 Score=68.36 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=11.3
Q ss_pred hhcCCCCCeeeccccc
Q 006515 267 LESQKSLSILSLRNCR 282 (642)
Q Consensus 267 l~~~~~L~~L~L~~n~ 282 (642)
+..+++++.+.|..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 4566777777777776
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.03 E-value=0.0078 Score=35.24 Aligned_cols=18 Identities=39% Similarity=0.796 Sum_probs=7.8
Q ss_pred CcEEEcccCCCCCCCCccc
Q 006515 129 MQYLSLGINNFTGRVPTEL 147 (642)
Q Consensus 129 L~~L~Ls~n~l~g~ip~~l 147 (642)
|++|||++|+++ .+|.+|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 344433
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.02 E-value=0.00044 Score=75.19 Aligned_cols=36 Identities=33% Similarity=0.321 Sum_probs=20.5
Q ss_pred CcEEEcccCCCCCCCC----ccccCCCCCcEEEeecccCC
Q 006515 129 MQYLSLGINNFTGRVP----TELGNLTKLISLSFSSNNFF 164 (642)
Q Consensus 129 L~~L~Ls~n~l~g~ip----~~l~~l~~L~~L~L~~n~l~ 164 (642)
|..|.|.+|.+..... ..+..++.|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 6666777776653322 22344556666666666654
No 77
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=95.01 E-value=0.028 Score=46.78 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=14.9
Q ss_pred cccceEEEEeehHHHHHHHHH
Q 006515 594 KHVGKIVGITVGCAAALVIIS 614 (642)
Q Consensus 594 ~~~~~~~g~~~g~~~~~~~~~ 614 (642)
.+.+.|+||+||+++++.+|+
T Consensus 63 ls~gaiagi~vg~~~~v~~lv 83 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVVGGLV 83 (96)
T ss_pred cccccEEEEEeehhhHHHHHH
Confidence 356789999999876644443
No 78
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.0026 Score=62.15 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=27.3
Q ss_pred CCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCcCCCCCchhccCcccccEEEccCCCCC
Q 006515 176 SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (642)
Q Consensus 176 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~ 236 (642)
+.+.|++-++.++.. .....++.|+.|.|+-|+++..- .+..+++|++|+|..|.+.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc
Confidence 444455555555421 22334555555555555555322 2344555555555555443
No 79
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.0044 Score=60.64 Aligned_cols=79 Identities=33% Similarity=0.436 Sum_probs=47.2
Q ss_pred hhcCCCCCeeecccccCCCCCchhhcCCcccceecccccccCCCcch--hhcCCCCCcEEECcCCcCCCCCCccc-----
Q 006515 267 LESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPT--SLQDLSTLQYLYLGNNNLSGELPVNI----- 339 (642)
Q Consensus 267 l~~~~~L~~L~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~~p~--~l~~l~~L~~L~L~~N~l~g~~p~~~----- 339 (642)
...++.|+.|.|+-|.++..-| +..+++|+.|+|..|.|.. +-+ -+.++|+|+.|.|..|.-.|.-+...
T Consensus 37 c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 3455666666666666653322 4556677777777776652 221 24567777777777777776666443
Q ss_pred -CCCCccEEE
Q 006515 340 -IAPNLIALD 348 (642)
Q Consensus 340 -~~~~L~~L~ 348 (642)
.+++|+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 246666654
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.59 E-value=0.014 Score=34.12 Aligned_cols=19 Identities=58% Similarity=0.775 Sum_probs=10.1
Q ss_pred cceecccccccCCCcchhhc
Q 006515 297 LQLLDLSFNKLTGQIPTSLQ 316 (642)
Q Consensus 297 L~~L~Ls~N~l~g~~p~~l~ 316 (642)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555555555555 5554443
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.75 E-value=0.0016 Score=70.81 Aligned_cols=185 Identities=23% Similarity=0.254 Sum_probs=95.0
Q ss_pred CCCcEEEeecccCCCCCch----hhcCCCCCCEEEeccCCCCCCCchhh----cCC-CCCcEEEecCCcCCCC----Cch
Q 006515 151 TKLISLSFSSNNFFGPLPK----ELGKLTSLQQLYIDSSGVTGSIPQEF----ANL-KSLRILWASDNLFTGK----IPE 217 (642)
Q Consensus 151 ~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~g~----~p~ 217 (642)
..|..|.|.+|.+...... .+...+.|+.|++++|.+.+.--..+ ... ..|++|++..|.+++. +.+
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 4478888888888754333 34567788888888888874322222 121 4566667766666542 444
Q ss_pred hccCcccccEEEccCCCCCC----CchhhhhcCCCCCeEEcCCCCCCCCchhhhhcCCCCCeeecccccCCCCC----ch
Q 006515 218 FFGTLTELADLRLQGTLLEG----PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI----PD 289 (642)
Q Consensus 218 ~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~i----p~ 289 (642)
.+.....++.++++.|.+.. .++..+.. .+....++++|.|++|.++... -.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~--------------------~~~~~~~le~L~L~~~~~t~~~c~~l~~ 226 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALES--------------------AASPLSSLETLKLSRCGVTSSSCALLDE 226 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhh--------------------hhcccccHHHHhhhhcCcChHHHHHHHH
Confidence 55556666677777666531 11112221 1112344455555555444110 11
Q ss_pred hhcCCcc-cceecccccccCCC----cchhhcCC-CCCcEEECcCCcCCCCCCccc-----CCCCccEEEccCCcCC
Q 006515 290 QLGTFAK-LQLLDLSFNKLTGQ----IPTSLQDL-STLQYLYLGNNNLSGELPVNI-----IAPNLIALDVSYNPLS 355 (642)
Q Consensus 290 ~~~~l~~-L~~L~Ls~N~l~g~----~p~~l~~l-~~L~~L~L~~N~l~g~~p~~~-----~~~~L~~L~Ls~N~l~ 355 (642)
.+...+. +..|++..|++.+. ....+..+ ..++.++++.|.++..-.... .++.++++.+++|++.
T Consensus 227 ~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 227 VLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2222333 44455655555432 12223333 455666666666654333221 2345666666666655
No 82
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=93.54 E-value=0.012 Score=50.86 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=17.4
Q ss_pred cceEEEEeehHHHHHHHHHHHHhhhhccc
Q 006515 596 VGKIVGITVGCAAALVIISSVFYLWWTKD 624 (642)
Q Consensus 596 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 624 (642)
.++|+||++|+++++++++++++|++|||
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888887776555555544444444
No 83
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=93.52 E-value=0.023 Score=42.39 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=1.7
Q ss_pred HhhhhccccccccccccCC
Q 006515 617 FYLWWTKDSSSHIRIFTDS 635 (642)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~ 635 (642)
.|+++|.|+++..-.--++
T Consensus 30 lf~iyR~rkkdEGSY~l~e 48 (64)
T PF01034_consen 30 LFLIYRMRKKDEGSYDLDE 48 (64)
T ss_dssp -------S------SS--S
T ss_pred HHHHHHHHhcCCCCccCCC
Confidence 3344555555554433333
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.38 E-value=0.0031 Score=60.11 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=51.0
Q ss_pred hhcCCCCCCEEEccCCCCCCCCchhhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCC
Q 006515 98 ELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSL 177 (642)
Q Consensus 98 ~l~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 177 (642)
.+......+.||++.|.+. .+-..|.-++.|..|+++.|.+. ..|..++.+..++.+++.+|.++ ..|.+++.++.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3455566666676666554 23333445566666666666665 56666666666666666666554 455556666666
Q ss_pred CEEEeccCCC
Q 006515 178 QQLYIDSSGV 187 (642)
Q Consensus 178 ~~L~Ls~n~l 187 (642)
+++++..|.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 6655555543
No 85
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=92.20 E-value=0.83 Score=45.39 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=12.8
Q ss_pred CCcccceEEEEeehHHHHHHHHHHH
Q 006515 592 DKKHVGKIVGITVGCAAALVIISSV 616 (642)
Q Consensus 592 ~~~~~~~~~g~~~g~~~~~~~~~~~ 616 (642)
++.+.+.+|+.++|++++++++.++
T Consensus 208 ~~~~~W~iv~g~~~G~~~L~ll~~l 232 (278)
T PF06697_consen 208 KRSWWWKIVVGVVGGVVLLGLLSLL 232 (278)
T ss_pred CcceeEEEEEEehHHHHHHHHHHHH
Confidence 4445566555545555554555333
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.52 E-value=0.23 Score=26.97 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=3.3
Q ss_pred CcEEEcccCCC
Q 006515 129 MQYLSLGINNF 139 (642)
Q Consensus 129 L~~L~Ls~n~l 139 (642)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 87
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=89.36 E-value=0.18 Score=33.33 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=12.5
Q ss_pred EEEEeehHHHHHHHHHHH--Hhhhhccccc
Q 006515 599 IVGITVGCAAALVIISSV--FYLWWTKDSS 626 (642)
Q Consensus 599 ~~g~~~g~~~~~~~~~~~--~~~~~~~~~~ 626 (642)
.+|+++|.++++++++++ ++.+++||.+
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 345555554443333333 3334454433
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.12 E-value=0.0058 Score=58.26 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=67.2
Q ss_pred hhcCCCCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhcCCCCCCEEEeccCCCCCCCchhhcCCCCC
Q 006515 122 EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL 201 (642)
Q Consensus 122 ~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 201 (642)
.+....+-+.||++.|++. .+-..|+-++.|..|+++.|++. -+|..++.+..++.+++..|..+ ..|.+++.++.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4667788888999988876 45556777788888888888876 56777777777888887777776 677778888888
Q ss_pred cEEEecCCcCC
Q 006515 202 RILWASDNLFT 212 (642)
Q Consensus 202 ~~L~L~~n~l~ 212 (642)
+++++-.|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88777777654
No 89
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=85.92 E-value=0.6 Score=50.36 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=17.7
Q ss_pred EEEEEEEeEecCCCCcccccceEEEEEEcCeEe
Q 006515 488 IDLHFAEITMEDSLSWKGLGRRVFDVYIQGERV 520 (642)
Q Consensus 488 v~lhF~e~~~~~~~~~~~~g~r~F~V~i~~~~~ 520 (642)
|.|.|.+.. -...|--+|-|++||...
T Consensus 269 ~~l~f~~a~------~~~sGLYv~V~~~nghv~ 295 (439)
T PF02480_consen 269 VDLQFTNAP------ESASGLYVFVVYYNGHVE 295 (439)
T ss_dssp SSEEESS--------GGG-EEEEEEEEETTEEE
T ss_pred cceEecCCC------cccCceEEEEEEECCeee
Confidence 346666654 456688899999999764
No 90
>PHA03265 envelope glycoprotein D; Provisional
Probab=82.70 E-value=0.96 Score=45.73 Aligned_cols=21 Identities=10% Similarity=0.325 Sum_probs=11.1
Q ss_pred HHHHHHHhhhhcccccccccc
Q 006515 611 VIISSVFYLWWTKDSSSHIRI 631 (642)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~ 631 (642)
+++.++.+++||||+...+++
T Consensus 362 v~vg~il~~~~rr~k~~~k~~ 382 (402)
T PHA03265 362 VLVGVILYVCLRRKKELKKSA 382 (402)
T ss_pred hhhhHHHHHHhhhhhhhhhhh
Confidence 344444555666665544443
No 91
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=82.63 E-value=1.7 Score=41.05 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=12.0
Q ss_pred ccceEEEEeehHHHHHHHH
Q 006515 595 HVGKIVGITVGCAAALVII 613 (642)
Q Consensus 595 ~~~~~~g~~~g~~~~~~~~ 613 (642)
...+++||++|++++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI 54 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVI 54 (221)
T ss_pred ceeeeeeeecchhhhHHHH
Confidence 4557888888866553333
No 92
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=82.49 E-value=0.4 Score=35.93 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=0.9
Q ss_pred cceEEEEeehHHHHHHHHHHHHhhhhccc
Q 006515 596 VGKIVGITVGCAAALVIISSVFYLWWTKD 624 (642)
Q Consensus 596 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 624 (642)
.++|+|+++|++.++++++++++.++||-
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR~rkkd 40 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYRMRKKD 40 (64)
T ss_dssp -------------------------S---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45778888887777777889999889986
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.44 E-value=1.2 Score=26.93 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=6.0
Q ss_pred CCcEEEcccCCCC
Q 006515 128 NMQYLSLGINNFT 140 (642)
Q Consensus 128 ~L~~L~Ls~n~l~ 140 (642)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.44 E-value=1.2 Score=26.93 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=6.0
Q ss_pred CCcEEEcccCCCC
Q 006515 128 NMQYLSLGINNFT 140 (642)
Q Consensus 128 ~L~~L~Ls~n~l~ 140 (642)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 95
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.92 E-value=0.5 Score=44.61 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=11.9
Q ss_pred CcEEEecCCcCCCCCchhccCcccccEEEcc
Q 006515 201 LRILWASDNLFTGKIPEFFGTLTELADLRLQ 231 (642)
Q Consensus 201 L~~L~L~~n~l~g~~p~~l~~l~~L~~L~L~ 231 (642)
++.++-++..+...--+.+.+++.++.|.+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~ 133 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLA 133 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheec
Confidence 3444444444433322333333333333333
No 96
>PF15069 FAM163: FAM163 family
Probab=77.87 E-value=2.4 Score=37.42 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=16.3
Q ss_pred cceEEEEeehHHHHHHHHHHHHhh
Q 006515 596 VGKIVGITVGCAAALVIISSVFYL 619 (642)
Q Consensus 596 ~~~~~g~~~g~~~~~~~~~~~~~~ 619 (642)
+.+|.|++.+.+++++|++++|++
T Consensus 5 TvVItGgILAtVILLcIIaVLCYC 28 (143)
T PF15069_consen 5 TVVITGGILATVILLCIIAVLCYC 28 (143)
T ss_pred eEEEechHHHHHHHHHHHHHHHHH
Confidence 456777777777776666666664
No 97
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.52 E-value=1.9 Score=25.99 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=7.4
Q ss_pred CCCcEEEeecccCC
Q 006515 151 TKLISLSFSSNNFF 164 (642)
Q Consensus 151 ~~L~~L~L~~n~l~ 164 (642)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555554
No 98
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.52 E-value=1.9 Score=25.99 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=7.4
Q ss_pred CCCcEEEeecccCC
Q 006515 151 TKLISLSFSSNNFF 164 (642)
Q Consensus 151 ~~L~~L~L~~n~l~ 164 (642)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555554
No 99
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=76.69 E-value=2.7 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=15.9
Q ss_pred cccceEEEEeehHHHHHHHHHH
Q 006515 594 KHVGKIVGITVGCAAALVIISS 615 (642)
Q Consensus 594 ~~~~~~~g~~~g~~~~~~~~~~ 615 (642)
-++++|+||+|++++++..|+.
T Consensus 364 LstgaIaGIsvavvvvVgglvG 385 (397)
T PF03302_consen 364 LSTGAIAGISVAVVVVVGGLVG 385 (397)
T ss_pred ccccceeeeeehhHHHHHHHHH
Confidence 4688999999998766444433
No 100
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=73.60 E-value=0.48 Score=28.14 Aligned_cols=13 Identities=54% Similarity=0.708 Sum_probs=4.7
Q ss_pred ccceecccccccC
Q 006515 296 KLQLLDLSFNKLT 308 (642)
Q Consensus 296 ~L~~L~Ls~N~l~ 308 (642)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 101
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.91 E-value=1.1 Score=42.39 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=25.6
Q ss_pred CCCCEEEeccCCCCCCCchhhcCCCCCcEEEecCCc
Q 006515 175 TSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL 210 (642)
Q Consensus 175 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 210 (642)
..++.++-++..+..+--+.+.+++.++.|.+.++.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 456777777777776666667777777777777664
No 102
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=71.60 E-value=2.3 Score=44.54 Aligned_cols=246 Identities=19% Similarity=0.159 Sum_probs=134.7
Q ss_pred CceeEEEEeCCC-CCCCCchhh-cCCCCCCEEEccCC-CCCCCCch-hhcCCCCCcEEEcccCC-CCC------------
Q 006515 79 CHITHLKIYALD-IMGELPSEL-FMLRKLMDLNLGQN-VLNGSIPA-EIGQLSNMQYLSLGINN-FTG------------ 141 (642)
Q Consensus 79 ~~v~~L~l~~~~-l~g~ip~~l-~~l~~L~~L~Ls~n-~l~g~~p~-~l~~l~~L~~L~Ls~n~-l~g------------ 141 (642)
.++++|.+.++. ++...-.++ ..++.|++|+|..| .++...-. -...+++|++|+++.+. ++|
T Consensus 164 pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~ 243 (483)
T KOG4341|consen 164 PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE 243 (483)
T ss_pred CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh
Confidence 356666666553 222111222 34677777777774 34422222 12357777777777652 221
Q ss_pred ----------CCCc-cc----cCCCCCcEEEeecccCCCCCc--hhhcCCCCCCEEEeccCCCCCCCc-hh-hcCCCCCc
Q 006515 142 ----------RVPT-EL----GNLTKLISLSFSSNNFFGPLP--KELGKLTSLQQLYIDSSGVTGSIP-QE-FANLKSLR 202 (642)
Q Consensus 142 ----------~ip~-~l----~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~p-~~-l~~l~~L~ 202 (642)
..+. .+ +....+..+++..+....... ..-..+..||.|..+++...+..+ .. -.+..+|+
T Consensus 244 l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~ 323 (483)
T KOG4341|consen 244 LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQ 323 (483)
T ss_pred hhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceE
Confidence 0111 11 234456667766663221111 111346788999988876543322 22 34678999
Q ss_pred EEEecCCcC-CCCCchhc-cCcccccEEEccCCCCCC--CchhhhhcCCCCCeEEcCCCCCC-CCchhhh----hcCCCC
Q 006515 203 ILWASDNLF-TGKIPEFF-GTLTELADLRLQGTLLEG--PIPRSFRALNKLEDLRIGDLSAE-DSTLDFL----ESQKSL 273 (642)
Q Consensus 203 ~L~L~~n~l-~g~~p~~l-~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~l----~~~~~L 273 (642)
.|-++.++- +..--..+ .++..|+.+++..+.... .+-.--.+.+.|+.|.++.+... +.....+ ..+..|
T Consensus 324 ~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 324 VLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred EEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 999988863 22111222 357788989888876542 22222345678999988876432 2211222 345778
Q ss_pred CeeecccccCCC-CCchhhcCCcccceecccccccCCC--cchhhcCCCCCcEE
Q 006515 274 SILSLRNCRVSG-KIPDQLGTFAKLQLLDLSFNKLTGQ--IPTSLQDLSTLQYL 324 (642)
Q Consensus 274 ~~L~L~~n~l~~-~ip~~~~~l~~L~~L~Ls~N~l~g~--~p~~l~~l~~L~~L 324 (642)
..+.|+++.... ..-+.+..+++|+.+++-.++-... +-..-.++|++++.
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 889999887542 2233456778999988888764322 22223455665544
No 103
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=70.79 E-value=1.4 Score=39.86 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccceEEEEeehHHHHHHHHHHHHhhhhcc
Q 006515 595 HVGKIVGITVGCAAALVIISSVFYLWWTK 623 (642)
Q Consensus 595 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~ 623 (642)
.++.++||+||+++++.++..+++++.||
T Consensus 127 ~T~tLVGIIVGVLlaIG~igGIIivvvRK 155 (162)
T PF05808_consen 127 STVTLVGIIVGVLLAIGFIGGIIIVVVRK 155 (162)
T ss_dssp -----------------------------
T ss_pred ceeeeeeehhhHHHHHHHHhheeeEEeeh
Confidence 45678899999877755554445544544
No 104
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=69.82 E-value=3.5 Score=38.81 Aligned_cols=12 Identities=50% Similarity=0.811 Sum_probs=6.2
Q ss_pred ceEEEEeehHHH
Q 006515 597 GKIVGITVGCAA 608 (642)
Q Consensus 597 ~~~~g~~~g~~~ 608 (642)
.+|+||++|+++
T Consensus 79 ~iivgvi~~Vi~ 90 (179)
T PF13908_consen 79 GIIVGVICGVIA 90 (179)
T ss_pred eeeeehhhHHHH
Confidence 355555555443
No 105
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=68.76 E-value=1.6 Score=37.50 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred EEEEeehHHHHHHHHHHHHhhhhccccc
Q 006515 599 IVGITVGCAAALVIISSVFYLWWTKDSS 626 (642)
Q Consensus 599 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 626 (642)
+|+..++++++++.++..+++|+|.|++
T Consensus 80 pi~~sal~v~lVl~llsg~lv~rrcrrr 107 (129)
T PF12191_consen 80 PILGSALSVVLVLALLSGFLVWRRCRRR 107 (129)
T ss_dssp ----------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3333444444433333334444444444
No 106
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=67.65 E-value=3.1 Score=33.67 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHhhhhcccc
Q 006515 605 GCAAALVIISSVFYLWWTKDS 625 (642)
Q Consensus 605 g~~~~~~~~~~~~~~~~~~~~ 625 (642)
|+++++++++.++++++.|++
T Consensus 49 GG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 49 GGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred chhhhHHHHHHHHHHhhhhhh
Confidence 444544444333444444443
No 107
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.54 E-value=12 Score=37.87 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=9.5
Q ss_pred CcccceEEEEeehHHHH
Q 006515 593 KKHVGKIVGITVGCAAA 609 (642)
Q Consensus 593 ~~~~~~~~g~~~g~~~~ 609 (642)
+-.++.+|.|..+++++
T Consensus 223 ~l~~G~VVlIslAiALG 239 (281)
T PF12768_consen 223 KLSRGFVVLISLAIALG 239 (281)
T ss_pred cccceEEEEEehHHHHH
Confidence 33466676666654443
No 108
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=67.46 E-value=5.9 Score=43.74 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=16.1
Q ss_pred CcccceEEEEeehHHHHHHHHHHHHhhhhccc
Q 006515 593 KKHVGKIVGITVGCAAALVIISSVFYLWWTKD 624 (642)
Q Consensus 593 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 624 (642)
++..|+|+|++|..+++++|++++++++||+.
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~ 297 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWKLCRKN 297 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHHHhccc
Confidence 34678888876554443333333333334443
No 109
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=66.16 E-value=4.2 Score=34.28 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=17.9
Q ss_pred cceEEEEeehHHHHHHHHHHHHhhhhccc
Q 006515 596 VGKIVGITVGCAAALVIISSVFYLWWTKD 624 (642)
Q Consensus 596 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 624 (642)
...+++.|+|+++++++..+..+...||+
T Consensus 82 ~d~aLp~VIGGLcaL~LaamGA~~LLrR~ 110 (126)
T PF03229_consen 82 VDFALPLVIGGLCALTLAAMGAGALLRRC 110 (126)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44677888888776555555544444444
No 110
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=63.31 E-value=2.5 Score=43.52 Aligned_cols=30 Identities=33% Similarity=0.415 Sum_probs=16.8
Q ss_pred eEEEEeehHHHHHHH-HHHHHhhhhcccccc
Q 006515 598 KIVGITVGCAAALVI-ISSVFYLWWTKDSSS 627 (642)
Q Consensus 598 ~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~ 627 (642)
.+|-|+||+++++++ +++++|++.|||++.
T Consensus 271 ~~vPIaVG~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence 566777776544333 344455556665544
No 111
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.12 E-value=5.2 Score=24.41 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=8.2
Q ss_pred CCcEEECcCCcCCCCCC
Q 006515 320 TLQYLYLGNNNLSGELP 336 (642)
Q Consensus 320 ~L~~L~L~~N~l~g~~p 336 (642)
+|++|++++|+|+ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555555555554 444
No 112
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=61.61 E-value=8.1 Score=26.26 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=21.5
Q ss_pred ceEEEEeehHHHHHHHH-HHHHhhhhcccccc
Q 006515 597 GKIVGITVGCAAALVII-SSVFYLWWTKDSSS 627 (642)
Q Consensus 597 ~~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~ 627 (642)
.-.++|++|.++.++++ +++.++++..+||.
T Consensus 8 ~~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 8 SNTVAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred CceEEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 35788888877765444 55567788888775
No 113
>PF15102 TMEM154: TMEM154 protein family
Probab=59.77 E-value=9.2 Score=34.13 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=5.0
Q ss_pred EEEEeehHHHH
Q 006515 599 IVGITVGCAAA 609 (642)
Q Consensus 599 ~~g~~~g~~~~ 609 (642)
++-|+|..+++
T Consensus 58 iLmIlIP~VLL 68 (146)
T PF15102_consen 58 ILMILIPLVLL 68 (146)
T ss_pred EEEEeHHHHHH
Confidence 44444554444
No 114
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=58.32 E-value=14 Score=35.23 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=16.9
Q ss_pred ceEEEEee-hHHHHHHHHHHHHhhhhcccc
Q 006515 597 GKIVGITV-GCAAALVIISSVFYLWWTKDS 625 (642)
Q Consensus 597 ~~~~g~~~-g~~~~~~~~~~~~~~~~~~~~ 625 (642)
.++|++++ |++++++++++++|+++.||+
T Consensus 100 ~~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 100 PTLIALVTSGSFLLLAILLGAGYCCHQRRS 129 (202)
T ss_pred eEEEehHHhhHHHHHHHHHHHHHHhhhhcc
Confidence 46666665 444554555666666666663
No 115
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=57.36 E-value=4.5 Score=36.31 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=15.3
Q ss_pred CcccceEEEEeehHHHHHHHHHHHHh
Q 006515 593 KKHVGKIVGITVGCAAALVIISSVFY 618 (642)
Q Consensus 593 ~~~~~~~~g~~~g~~~~~~~~~~~~~ 618 (642)
+--.+++||+.++.++ ++++++++|
T Consensus 49 nIVIGvVVGVGg~ill-~il~lvf~~ 73 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILL-GILALVFIF 73 (154)
T ss_pred cEEEEEEecccHHHHH-HHHHhheeE
Confidence 3467899997665544 456555443
No 116
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=56.92 E-value=3 Score=32.81 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=17.4
Q ss_pred ccceEEEEeehHHHHHHHHHHHHhhhhccc
Q 006515 595 HVGKIVGITVGCAAALVIISSVFYLWWTKD 624 (642)
Q Consensus 595 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 624 (642)
+.++.+|+++|=+++.++++++.|++-|.|
T Consensus 32 s~g~LaGiV~~D~vlTLLIv~~vy~car~r 61 (79)
T PF07213_consen 32 SPGLLAGIVAADAVLTLLIVLVVYYCARPR 61 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 355677887776666445555555444433
No 117
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=56.87 E-value=8.8 Score=23.45 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=7.4
Q ss_pred CCCcEEEcccCCCC
Q 006515 127 SNMQYLSLGINNFT 140 (642)
Q Consensus 127 ~~L~~L~Ls~n~l~ 140 (642)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555553
No 118
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=56.05 E-value=3.8 Score=41.41 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=0.0
Q ss_pred eEEEEeehHHHHHHHHHHHHhhhhccc
Q 006515 598 KIVGITVGCAAALVIISSVFYLWWTKD 624 (642)
Q Consensus 598 ~~~g~~~g~~~~~~~~~~~~~~~~~~~ 624 (642)
+|.++||+++.+ ++.+++|+|++|||
T Consensus 149 ~IpaVVI~~iLL-IA~iIa~icyrrkR 174 (290)
T PF05454_consen 149 FIPAVVIAAILL-IAGIIACICYRRKR 174 (290)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHH-HHHHHHHHhhhhhh
Confidence 445555554443 23334444444444
No 119
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=55.61 E-value=72 Score=30.19 Aligned_cols=28 Identities=7% Similarity=0.373 Sum_probs=12.5
Q ss_pred EEEEeehHHHHHHHHHHHHhhhhccccc
Q 006515 599 IVGITVGCAAALVIISSVFYLWWTKDSS 626 (642)
Q Consensus 599 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 626 (642)
.++|++=.++++++++++++++++||+|
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~~~R~~R 186 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFFWNRKKR 186 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhheeeccce
Confidence 3333333333333444445555555544
No 120
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=51.97 E-value=8.1 Score=50.14 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=23.3
Q ss_pred ecccccCCCCCchhhcCCcccceecccccccC
Q 006515 277 SLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT 308 (642)
Q Consensus 277 ~L~~n~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 308 (642)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57778887555556777778888888877765
No 121
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.81 E-value=13 Score=22.99 Aligned_cols=13 Identities=46% Similarity=0.583 Sum_probs=6.7
Q ss_pred CCcEEECcCCcCC
Q 006515 320 TLQYLYLGNNNLS 332 (642)
Q Consensus 320 ~L~~L~L~~N~l~ 332 (642)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 122
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.29 E-value=69 Score=34.58 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=18.9
Q ss_pred cceecccccccCCCcch---hhcCCCCCcEEECcCCcCC
Q 006515 297 LQLLDLSFNKLTGQIPT---SLQDLSTLQYLYLGNNNLS 332 (642)
Q Consensus 297 L~~L~Ls~N~l~g~~p~---~l~~l~~L~~L~L~~N~l~ 332 (642)
+..+.++.|.+....-. .+..-+.+..|++++|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 55566666665532221 1233456667777776543
No 123
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=48.78 E-value=17 Score=34.17 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=13.9
Q ss_pred cceEEEEeehHHHHHHHHHH
Q 006515 596 VGKIVGITVGCAAALVIISS 615 (642)
Q Consensus 596 ~~~~~g~~~g~~~~~~~~~~ 615 (642)
+..+++++||++++++++++
T Consensus 74 ~~~~~~iivgvi~~Vi~Iv~ 93 (179)
T PF13908_consen 74 IYFITGIIVGVICGVIAIVV 93 (179)
T ss_pred ccceeeeeeehhhHHHHHHH
Confidence 44688999998776555433
No 124
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=44.39 E-value=33 Score=30.40 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=9.5
Q ss_pred ceEEEEeehHHHHH
Q 006515 597 GKIVGITVGCAAAL 610 (642)
Q Consensus 597 ~~~~g~~~g~~~~~ 610 (642)
.+|+||+.|.+.+.
T Consensus 61 tAIaGIVfgiVfim 74 (155)
T PF10873_consen 61 TAIAGIVFGIVFIM 74 (155)
T ss_pred ceeeeeehhhHHHH
Confidence 46888888865543
No 125
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=43.71 E-value=36 Score=36.66 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=30.8
Q ss_pred CCCcEEEcccCCCCCCCCccccCCCCCcEEEeecccCCCCCchhhc---CCCCCCEEEeccCCCCCCCchhh
Q 006515 127 SNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELG---KLTSLQQLYIDSSGVTGSIPQEF 195 (642)
Q Consensus 127 ~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~p~~l 195 (642)
+.+++++++.|.+....|..+..-.. -|.++.+.++...-..+. .-..+.+++|+.|.....+|..+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~ 234 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTL 234 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHH
Confidence 44666677776665555544422111 044444444321111100 01235666666666666666544
No 126
>PF15345 TMEM51: Transmembrane protein 51
Probab=42.73 E-value=31 Score=33.34 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=12.9
Q ss_pred cceEEEEeehHHHHHHHHHHHHhhhhccc
Q 006515 596 VGKIVGITVGCAAALVIISSVFYLWWTKD 624 (642)
Q Consensus 596 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 624 (642)
+..++-+.||+.++ ++++.+|+.++.||
T Consensus 57 t~SVAyVLVG~Gv~-LLLLSICL~IR~KR 84 (233)
T PF15345_consen 57 TFSVAYVLVGSGVA-LLLLSICLSIRDKR 84 (233)
T ss_pred eEEEEEehhhHHHH-HHHHHHHHHHHHHH
Confidence 33444555666444 33334444444333
No 127
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.34 E-value=5.4 Score=34.68 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=19.2
Q ss_pred ccceEEEEeehHHHHHHHHHHHHhhhhccccc
Q 006515 595 HVGKIVGITVGCAAALVIISSVFYLWWTKDSS 626 (642)
Q Consensus 595 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 626 (642)
-.++|+|+++|. +++++++..++..+|||.+
T Consensus 66 i~~Ii~gv~aGv-Ig~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 66 IIGIIFGVMAGV-IGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHS----
T ss_pred eeehhHHHHHHH-HHHHHHHHHHHHHHhccCC
Confidence 456777777665 4556777788888888854
No 128
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=41.09 E-value=11 Score=37.57 Aligned_cols=7 Identities=14% Similarity=0.791 Sum_probs=3.1
Q ss_pred hhhcccc
Q 006515 619 LWWTKDS 625 (642)
Q Consensus 619 ~~~~~~~ 625 (642)
+|.+|||
T Consensus 280 iWlyrrR 286 (295)
T TIGR01478 280 IWLYRRR 286 (295)
T ss_pred HHHHHhh
Confidence 4544443
No 129
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.42 E-value=18 Score=39.58 Aligned_cols=65 Identities=29% Similarity=0.297 Sum_probs=33.1
Q ss_pred cCCCCCeeecccccCCCC--CchhhcCCcccceeccccc--ccCCCcchhhcC--CCCCcEEECcCCcCCCCC
Q 006515 269 SQKSLSILSLRNCRVSGK--IPDQLGTFAKLQLLDLSFN--KLTGQIPTSLQD--LSTLQYLYLGNNNLSGEL 335 (642)
Q Consensus 269 ~~~~L~~L~L~~n~l~~~--ip~~~~~l~~L~~L~Ls~N--~l~g~~p~~l~~--l~~L~~L~L~~N~l~g~~ 335 (642)
+.+.+..+.|++|++... +..--...|+|..|+|++| .+.. -.++.+ ...|++|-|.+|.+....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccch
Confidence 345566666666665421 1111123467777777777 3321 112222 234667777777776543
No 130
>PF12669 P12: Virus attachment protein p12 family
Probab=39.11 E-value=27 Score=26.02 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=3.1
Q ss_pred eehHHHH
Q 006515 603 TVGCAAA 609 (642)
Q Consensus 603 ~~g~~~~ 609 (642)
+||++++
T Consensus 3 II~~Ii~ 9 (58)
T PF12669_consen 3 IIGIIIL 9 (58)
T ss_pred eHHHHHH
Confidence 4444443
No 131
>PTZ00370 STEVOR; Provisional
Probab=35.88 E-value=12 Score=37.28 Aligned_cols=7 Identities=14% Similarity=0.791 Sum_probs=3.0
Q ss_pred hhhcccc
Q 006515 619 LWWTKDS 625 (642)
Q Consensus 619 ~~~~~~~ 625 (642)
+|.+|||
T Consensus 276 iwlyrrR 282 (296)
T PTZ00370 276 IWLYRRR 282 (296)
T ss_pred HHHHHhh
Confidence 4544443
No 132
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=34.85 E-value=30 Score=34.98 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=13.6
Q ss_pred EEEeehHHHHHHHHHHHHhhhhccc
Q 006515 600 VGITVGCAAALVIISSVFYLWWTKD 624 (642)
Q Consensus 600 ~g~~~g~~~~~~~~~~~~~~~~~~~ 624 (642)
|-|+++++++++.++++.++|+|-+
T Consensus 201 v~Iv~~cvaG~aAliva~~cW~Rlq 225 (341)
T PF06809_consen 201 VLIVVCCVAGAAALIVAGYCWYRLQ 225 (341)
T ss_pred ehhHHHHHHHHHHHHHhhheEEEec
Confidence 3344444555455566666676654
No 133
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=33.49 E-value=18 Score=31.87 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=11.5
Q ss_pred EeehHHHHHHHHHHHHhhhhccc
Q 006515 602 ITVGCAAALVIISSVFYLWWTKD 624 (642)
Q Consensus 602 ~~~g~~~~~~~~~~~~~~~~~~~ 624 (642)
|.+|.+++++++++++++|-+||
T Consensus 34 ILiaIvVliiiiivli~lcssRK 56 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRK 56 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34555555444555555444444
No 134
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.50 E-value=23 Score=38.82 Aligned_cols=64 Identities=27% Similarity=0.262 Sum_probs=33.8
Q ss_pred CCcccceecccccccCCC--cchhhcCCCCCcEEECcCC--cCCCCCCc--ccCCCCccEEEccCCcCCcc
Q 006515 293 TFAKLQLLDLSFNKLTGQ--IPTSLQDLSTLQYLYLGNN--NLSGELPV--NIIAPNLIALDVSYNPLSGN 357 (642)
Q Consensus 293 ~l~~L~~L~Ls~N~l~g~--~p~~l~~l~~L~~L~L~~N--~l~g~~p~--~~~~~~L~~L~Ls~N~l~g~ 357 (642)
+.+.+..++|++|++... +..--...|+|+.|+|++| .+. ..++ .+....|++|-+.+|++..+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccccc
Confidence 345666677777766521 1111123467777777777 332 1111 12345566777777776643
No 135
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=31.45 E-value=9.9 Score=38.72 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=4.5
Q ss_pred HHHHhhhhccc
Q 006515 614 SSVFYLWWTKD 624 (642)
Q Consensus 614 ~~~~~~~~~~~ 624 (642)
.+++++.||.|
T Consensus 272 MvIIYLILRYR 282 (299)
T PF02009_consen 272 MVIIYLILRYR 282 (299)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 136
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=30.36 E-value=42 Score=35.31 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=14.1
Q ss_pred EEEEEEEEecCCeEEEEEEecCCCC
Q 006515 537 LVKTFEANVTNTIIEIHFFWAGKGT 561 (642)
Q Consensus 537 ~~~~~~v~v~~~~l~i~~~~~~~g~ 561 (642)
|-..|.+.|+.+.-.++|.|-+.|+
T Consensus 52 Yal~F~~~Vpani~~lsFTW~a~~~ 76 (563)
T KOG1024|consen 52 YALNFAVPVPANISDLSFTWQADHP 76 (563)
T ss_pred hhheeceeccccccceEEEEecCCc
Confidence 3344556666555556666665553
No 137
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=30.32 E-value=52 Score=21.10 Aligned_cols=8 Identities=13% Similarity=-0.006 Sum_probs=3.3
Q ss_pred Hhhhhccc
Q 006515 617 FYLWWTKD 624 (642)
Q Consensus 617 ~~~~~~~~ 624 (642)
.++++|||
T Consensus 25 ~~~~~~rk 32 (34)
T TIGR01167 25 GLLLRKRK 32 (34)
T ss_pred HHHheecc
Confidence 33344444
No 138
>PF15431 TMEM190: Transmembrane protein 190
Probab=29.47 E-value=37 Score=28.45 Aligned_cols=14 Identities=36% Similarity=1.120 Sum_probs=8.8
Q ss_pred HHHHHHHhhhhccc
Q 006515 611 VIISSVFYLWWTKD 624 (642)
Q Consensus 611 ~~~~~~~~~~~~~~ 624 (642)
.++..+|+|||-||
T Consensus 73 ~Li~~iclFWWAkR 86 (134)
T PF15431_consen 73 LLICSICLFWWAKR 86 (134)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555677777666
No 139
>PHA03281 envelope glycoprotein E; Provisional
Probab=28.94 E-value=74 Score=34.73 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=19.8
Q ss_pred EEEEEEEeEecCCCCcccccceEEEEEEcCeEe
Q 006515 488 IDLHFAEITMEDSLSWKGLGRRVFDVYIQGERV 520 (642)
Q Consensus 488 v~lhF~e~~~~~~~~~~~~g~r~F~V~i~~~~~ 520 (642)
|.|.|.+.. -...|--||-|++||...
T Consensus 475 vdL~F~nAp------asaSGLYVfVl~yNGHVe 501 (642)
T PHA03281 475 SALKFVDAA------ESLSGLYVFIIHFNGHVE 501 (642)
T ss_pred cceEeccCC------cccCceEEEEEEECCeee
Confidence 446676654 456688999999999764
No 140
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=27.37 E-value=23 Score=29.36 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=8.9
Q ss_pred ccceEEEEeehHHHH
Q 006515 595 HVGKIVGITVGCAAA 609 (642)
Q Consensus 595 ~~~~~~g~~~g~~~~ 609 (642)
+....||+|++++++
T Consensus 16 sW~~LVGVv~~al~~ 30 (102)
T PF15176_consen 16 SWPFLVGVVVTALVT 30 (102)
T ss_pred ccHhHHHHHHHHHHH
Confidence 344566777666554
No 141
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=26.99 E-value=36 Score=28.35 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=4.6
Q ss_pred cceEEEEeeh
Q 006515 596 VGKIVGITVG 605 (642)
Q Consensus 596 ~~~~~g~~~g 605 (642)
.++.||+++.
T Consensus 69 agi~vg~~~~ 78 (96)
T PTZ00382 69 AGISVAVVAV 78 (96)
T ss_pred EEEEeehhhH
Confidence 3445554443
No 142
>PF03494 Beta-APP: Beta-amyloid peptide (beta-APP); InterPro: IPR013803 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents the amyloid-beta peptide (A-beta), which originates as a breakdown product from the cleavage of amyloid-beta precursor protein (APP, or A4), an integral, glycosylated membrane brain protein. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 2LMQ_F 3JTI_B 2LMO_B 3MOQ_D 2LNQ_E 2LMP_G 2BEG_B 1AMC_A 3OW9_B 3U0T_F ....
Probab=25.37 E-value=20 Score=23.34 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=11.5
Q ss_pred cccceEEEEeehHHH
Q 006515 594 KHVGKIVGITVGCAA 608 (642)
Q Consensus 594 ~~~~~~~g~~~g~~~ 608 (642)
+.++.|||..+|+++
T Consensus 23 SNKGAIIGLMvGgvv 37 (39)
T PF03494_consen 23 SNKGAIIGLMVGGVV 37 (39)
T ss_dssp SSSSEEEEEEEESEE
T ss_pred CCCceEEEEEeeeEE
Confidence 457789999988754
No 143
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.27 E-value=78 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=16.6
Q ss_pred ccceEEEEeehHHHHHHHHHHH-Hhhhhcc
Q 006515 595 HVGKIVGITVGCAAALVIISSV-FYLWWTK 623 (642)
Q Consensus 595 ~~~~~~g~~~g~~~~~~~~~~~-~~~~~~~ 623 (642)
+-++|+-++||.+++++++.-. .++++++
T Consensus 11 nPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 11 NPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred CCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 3457888888876664444333 3344444
No 144
>PF15102 TMEM154: TMEM154 protein family
Probab=24.67 E-value=23 Score=31.66 Aligned_cols=13 Identities=0% Similarity=-0.118 Sum_probs=7.9
Q ss_pred ceEEEEeehHHHH
Q 006515 597 GKIVGITVGCAAA 609 (642)
Q Consensus 597 ~~~~g~~~g~~~~ 609 (642)
.++|..|++++++
T Consensus 60 mIlIP~VLLvlLL 72 (146)
T PF15102_consen 60 MILIPLVLLVLLL 72 (146)
T ss_pred EEeHHHHHHHHHH
Confidence 4556656676655
No 145
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=24.43 E-value=25 Score=38.09 Aligned_cols=18 Identities=22% Similarity=0.684 Sum_probs=0.0
Q ss_pred ceEEEEeehHHHHHHHHH
Q 006515 597 GKIVGITVGCAAALVIIS 614 (642)
Q Consensus 597 ~~~~g~~~g~~~~~~~~~ 614 (642)
.+++++++|+++++++++
T Consensus 352 ~~~l~vVlgvavlivVv~ 369 (439)
T PF02480_consen 352 AALLGVVLGVAVLIVVVG 369 (439)
T ss_dssp ------------------
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 345555555554443433
No 146
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=24.35 E-value=56 Score=25.03 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhhccccc
Q 006515 607 AAALVIISSVFYLWWTKDSS 626 (642)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~ 626 (642)
+.++++++.+|++|..||.+
T Consensus 5 lll~vvll~~clC~lsrRvk 24 (74)
T PF05083_consen 5 LLLAVVLLSACLCRLSRRVK 24 (74)
T ss_pred hhHHHHHHHHHHHHHHhhhh
Confidence 34445556667777766644
No 147
>PHA03283 envelope glycoprotein E; Provisional
Probab=23.98 E-value=1.3e+02 Score=32.85 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=20.1
Q ss_pred EEEEEEEeEecCCCCcccccceEEEEEEcCeEe
Q 006515 488 IDLHFAEITMEDSLSWKGLGRRVFDVYIQGERV 520 (642)
Q Consensus 488 v~lhF~e~~~~~~~~~~~~g~r~F~V~i~~~~~ 520 (642)
|.|.|.+.. -...|--||-|++||...
T Consensus 315 v~L~f~nap------~~~SGLYVfVv~yNgHve 341 (542)
T PHA03283 315 VDLLFKNAP------ASASGLYVFVLLYNGHPE 341 (542)
T ss_pred cceEeccCC------cccCceEEEEEEECCeee
Confidence 556776654 456688999999999764
No 148
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=23.50 E-value=65 Score=22.73 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=9.9
Q ss_pred ehHHHHHHHHHHHHhhhhcc
Q 006515 604 VGCAAALVIISSVFYLWWTK 623 (642)
Q Consensus 604 ~g~~~~~~~~~~~~~~~~~~ 623 (642)
+|+.++.+++.+..|-|.||
T Consensus 25 ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 25 IGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444434444556555554
No 149
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=23.41 E-value=49 Score=19.77 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=5.5
Q ss_pred CCCcEEEcccC
Q 006515 127 SNMQYLSLGIN 137 (642)
Q Consensus 127 ~~L~~L~Ls~n 137 (642)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 150
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.11 E-value=36 Score=30.00 Aligned_cols=6 Identities=0% Similarity=-0.174 Sum_probs=3.1
Q ss_pred hhhccc
Q 006515 619 LWWTKD 624 (642)
Q Consensus 619 ~~~~~~ 624 (642)
-.+|||
T Consensus 24 rRR~r~ 29 (130)
T PF12273_consen 24 RRRRRR 29 (130)
T ss_pred HHHhhc
Confidence 355555
No 151
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=22.08 E-value=39 Score=31.28 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=13.5
Q ss_pred cceEEEEeehHHHHHHHHHHHHhhhhccccccccc
Q 006515 596 VGKIVGITVGCAAALVIISSVFYLWWTKDSSSHIR 630 (642)
Q Consensus 596 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (642)
.++|+||| +|++++++-.+..|+.++|| .+|-
T Consensus 114 ~g~IaGIv-sav~valvGAvsSyiaYqkK--KlCF 145 (169)
T PF12301_consen 114 AGTIAGIV-SAVVVALVGAVSSYIAYQKK--KLCF 145 (169)
T ss_pred cchhhhHH-HHHHHHHHHHHHHHHHHHhh--ccce
Confidence 44555554 33333222233344444443 2665
No 152
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=21.97 E-value=95 Score=19.00 Aligned_cols=13 Identities=8% Similarity=-0.133 Sum_probs=6.0
Q ss_pred HHHHHHhhhhccc
Q 006515 612 IISSVFYLWWTKD 624 (642)
Q Consensus 612 ~~~~~~~~~~~~~ 624 (642)
.+.++.++.+|||
T Consensus 12 ~~~l~~l~~~rRr 24 (26)
T TIGR03778 12 GLGLLGLLGLRRR 24 (26)
T ss_pred HHHHHHHHHHhhc
Confidence 3344444445554
No 153
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=20.69 E-value=25 Score=36.67 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=16.7
Q ss_pred eEEEEeehHHHHHHHHHHHHhhhhccccccccccccCCccc
Q 006515 598 KIVGITVGCAAALVIISSVFYLWWTKDSSSHIRIFTDSPKQ 638 (642)
Q Consensus 598 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (642)
+|.++.|-+++++ ++.+++|++.||||-+..---++++||
T Consensus 388 i~~avl~p~~il~-~~~~~~~~~v~rrr~~~~dv~~~~~eg 427 (436)
T PTZ00208 388 IILAVLVPAIILA-IIAVAFFIMVKRRRNSSEDVDTGKAEG 427 (436)
T ss_pred HHHHHHHHHHHHH-HHHHHhheeeeeccCCchhcccccccC
Confidence 4444444444443 333334444555543333333444444
No 154
>smart00469 WIF Wnt-inhibitory factor-1 like domain. Occurs as extracellular domain in metazoan Ryk receptor tyrosine kinases. C. elegans Ryk is required for cell-cuticle recognition. WIF-1 binds to Wnt and inhibits its activity.
Probab=20.66 E-value=22 Score=31.50 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=29.7
Q ss_pred cCchhhhhCCCCceEEEEEEEEecCCeEEEEEEecCCCC
Q 006515 523 DLNIKKEAGGSKRALVKTFEANVTNTIIEIHFFWAGKGT 561 (642)
Q Consensus 523 ~~di~~~~~~~~~~~~~~~~v~v~~~~l~i~~~~~~~g~ 561 (642)
+.|++....|.-.++.+||.+.|+.+.-.++|.|-+.+.
T Consensus 18 ~aelyyI~nG~vn~ya~~F~~~Vps~i~~v~FTW~s~~~ 56 (136)
T smart00469 18 SAELYYVREGKISPYALNFMVPVPANIHDLSFTWQALGQ 56 (136)
T ss_pred CcEEEEEecCcccHHHhccCCCcCCccceEEEEEEcCCC
Confidence 345555555566678889998999888899999988764
No 155
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=20.61 E-value=88 Score=29.48 Aligned_cols=27 Identities=4% Similarity=0.048 Sum_probs=16.3
Q ss_pred ceEEEEeehHHHHHHHHHHHHhhhhcc
Q 006515 597 GKIVGITVGCAAALVIISSVFYLWWTK 623 (642)
Q Consensus 597 ~~~~g~~~g~~~~~~~~~~~~~~~~~~ 623 (642)
+-=++..||++++++.+..++||.+|.
T Consensus 157 ~FD~~SFiGGIVL~LGv~aI~ff~~KF 183 (186)
T PF05283_consen 157 TFDAASFIGGIVLTLGVLAIIFFLYKF 183 (186)
T ss_pred CCchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 345566778777765555555555554
Done!