Query 006515
Match_columns 642
No_of_seqs 557 out of 5430
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 19:19:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006515.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2140-2144//hhsearch_pdb/006515hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 318.5 23.6 320 23-362 6-363 (768)
2 4eco_A Uncharacterized protein 1.0 1 1 309.2 19.7 337 25-373 26-496 (636)
3 4ecn_A Leucine-rich repeat pro 1.0 1 1 307.9 25.6 326 23-363 263-717 (876)
4 3rgz_A Protein brassinosteroid 1.0 1 1 298.2 22.0 136 76-212 97-260 (768)
5 1ogq_A PGIP-2, polygalacturona 1.0 1 1 292.9 17.8 298 24-356 1-306 (313)
6 3v47_A TOLL-like receptor 5B a 1.0 1 1 267.5 23.0 296 78-373 29-379 (455)
7 4eco_A Uncharacterized protein 1.0 1 1 261.2 18.6 274 95-374 198-522 (636)
8 3v47_A TOLL-like receptor 5B a 1.0 1 1 257.8 19.1 271 103-373 30-355 (455)
9 2id5_A Lingo-1, leucine rich r 1.0 1 1 257.6 24.1 297 77-373 30-328 (477)
10 4ecn_A Leucine-rich repeat pro 1.0 1 1 257.4 21.6 271 95-373 440-761 (876)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=318.48 Aligned_cols=320 Identities=27% Similarity=0.382 Sum_probs=186.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCC---CC
Q ss_conf 4889988999999999952789---99999999999999887888999983750699977366999817887877---72
Q 006515 23 QTSTDSAEVDALNKLIDYWNLR---SKINLTTIDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMGE---LP 96 (642)
Q Consensus 23 ~~~~~~~~~~al~~~~~~~~~~---~~w~~~~~d~c~~~~~w~~~~~~~~v~C~~~~~~~~i~~L~l~~~~l~~~---lp 96 (642)
+++..++|++||++||+.+.++ .+|+.. .|||. | .||.|+ .++|+.|++.+..+.|. +|
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~~l~~W~~~-~~~C~----w------~gv~C~----~~~v~~L~L~~~~l~g~~~~l~ 70 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKNLLPDWSSN-KNPCT----F------DGVTCR----DDKVTSIDLSSKPLNVGFSAVS 70 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTTSSTTCCTT-SCGGG----S------TTEEEE----TTEEEEEECTTSCCCEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCC----C------CCEEEC----CCCEEEEECCCCCCCCCCCCCC
T ss_conf 5668789999999999667896214687899-98768----8------413878----9927898778998677557669
Q ss_pred H-----------------------HHCCCCCCCEEECCCCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCCCC-CCC
Q ss_conf 4-----------------------320999997998669989988844--22299888689810577988788123-699
Q 006515 97 S-----------------------ELFMLRKLMDLNLGQNVLNGSIPA--EIGQLSNMQYLSLGINNFTGRVPTEL-GNL 150 (642)
Q Consensus 97 ~-----------------------~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l 150 (642)
+ .+..+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+.+|..+ .++
T Consensus 71 ~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 150 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150 (768)
T ss_dssp HHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 65731680224678688867870332457889989898985787078967872788999898968826774797785638
Q ss_pred CCCCEEEEECCCCCCCCCHH---HCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCHHCCCCCCCCE
Q ss_conf 99868992243389999520---059999998982367899988111129988747870377478888400069553248
Q 006515 151 TKLISLSFSSNNFFGPLPKE---LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227 (642)
Q Consensus 151 ~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 227 (642)
++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+.+|. ++.+++|++
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~ 227 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH 227 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE
T ss_pred CCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCE
T ss_conf 8999898979835885871556643589889898978803465784--5478689898928827887711-126999998
Q ss_pred EECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHCCC-CCCCEECCCCCC
Q ss_conf 9806987989861543159999968848999999760554128787766244654788892112488-555452122420
Q 006515 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTF-AKLQLLDLSFNK 306 (642)
Q Consensus 228 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~n~ 306 (642)
|++++|.+++.+|..+..+++|+.|++++|.+....+.. .+++|++|++++|.+.+.+|..+... ++|+.|++++|.
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCC
T ss_conf 979488587816577744888898989888665716724--368789897917855772588888446868899896896
Q ss_pred CCCCCCHHHCCCCCCCEEECCCCCCCCCCCCC-C-CCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 47986122139999969987588599878966-6-79985399910796986689221
Q 006515 307 LTGQIPTSLQDLSTLQYLYLGNNNLSGELPVN-I-IAPNLIALDVSYNPLSGNLPRNF 362 (642)
Q Consensus 307 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~-~~~~L~~LdLs~N~l~g~ip~~~ 362 (642)
+.+.+|..+..+++|+.|++++|.+.+.+|.. + .+++|+.|++++|.+++.+|..+
T Consensus 306 l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 363 (768)
T 3rgz_A 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363 (768)
T ss_dssp EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred CCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 7784236775587766778978852573797887248888788484784376230989
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=309.21 Aligned_cols=337 Identities=19% Similarity=0.278 Sum_probs=264.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCC---CCEEEECCCCCCCEEEEEEECCCCCCCCCHH
Q ss_conf 899889999999999527899999999999999988788---8999---9837506999773669998178878777243
Q 006515 25 STDSAEVDALNKLIDYWNLRSKINLTTIDPCTRNASWAS---ENAN---PRVACDCTSNSCHITHLKIYALDIMGELPSE 98 (642)
Q Consensus 25 ~~~~~~~~al~~~~~~~~~~~~w~~~~~d~c~~~~~w~~---~~~~---~~v~C~~~~~~~~i~~L~l~~~~l~~~lp~~ 98 (642)
+....|++||.++++.++.+ .|... .++|.....|.. ...| .||.|+.. ++|+.|++.++++.|.+|++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~-~w~~~-~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~---~~V~~L~L~~~~l~g~lp~~ 100 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGK-NWSQQ-GFGTQPGANWNFNKELDMWGAQPGVSLNSN---GRVTGLSLEGFGASGRVPDA 100 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-GCCCC-C------CCCCCSSCGGGTTCCTTEEECTT---CCEEEEECTTSCCEEEECGG
T ss_pred HHHHHHHHHHHHHHHHCCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEECCC---CCEEEEEECCCCCCCCCCHH
T ss_conf 66778899999999975899-74547-767765788777998000147798487678---97889984276657728857
Q ss_pred HCCCCCCCEEECCCCCC---------------------------------------------------------------
Q ss_conf 20999997998669989---------------------------------------------------------------
Q 006515 99 LFMLRKLMDLNLGQNVL--------------------------------------------------------------- 115 (642)
Q Consensus 99 l~~l~~L~~L~Ls~n~l--------------------------------------------------------------- 115 (642)
++++++|++|+|++|.+
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred HHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 85684511898768851237743345323567338888888765777554117066677887777642755465410133
Q ss_pred ---------------CCCCCHHHCCCCCCCEEECCCCCCCCC-----------------CCCCCC--CCCCCCEEEEECC
Q ss_conf ---------------988844222998886898105779887-----------------881236--9999868992243
Q 006515 116 ---------------NGSIPAEIGQLSNMQYLSLGINNFTGR-----------------VPTELG--NLTKLISLSFSSN 161 (642)
Q Consensus 116 ---------------~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n 161 (642)
++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|
T Consensus 181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n 259 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259 (636)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC
T ss_pred CCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCC
T ss_conf 44213001013677750-78777256478789886882366423221222221001024863220044687888980488
Q ss_pred CCCCCCCHHHCCCCCCCEEEECCCC-CCC-CCCHHHCCC------CCCCEEEECCCCCCCCCCH--HCCCCCCCCEEECC
Q ss_conf 3899995200599999989823678-999-881111299------8874787037747888840--00695532489806
Q 006515 162 NFFGPLPKELGKLTSLQQLYIDSSG-VTG-SIPQEFANL------KSLRILWASDNLFTGKIPE--FFGTLTELADLRLQ 231 (642)
Q Consensus 162 ~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l------~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~l~ 231 (642)
.+.+.+|..+.++++|++|++++|. +++ .+|..+..+ ++|+.|++++|.+. .+|. .++.+++|+.|+++
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECC
T ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEECC
T ss_conf 57762838883499978897847988766533578875430465788888989799377-66765554257888989690
Q ss_pred CCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCC-CCEEECCCCCCCCCCCHHHCCCC--CCCEECCCCCCCC
Q ss_conf 98798986154315999996884899999976055412878-77662446547888921124885--5545212242047
Q 006515 232 GTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKS-LSILSLRNCRVSGKIPDQLGTFA--KLQLLDLSFNKLT 308 (642)
Q Consensus 232 ~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~ 308 (642)
+|.+.|.+| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. .+|..+..++ +|+.|++++|.+.
T Consensus 339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 339 YNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp SCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCC
T ss_conf 880705166-6478898898989899403-033756510236868985298275-4466553334576688977488578
Q ss_pred CCCCHHHC-------CCCCCCEEECCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCC-C--------CCEEE
Q ss_conf 98612213-------999996998758859987896667--998539991079698668922137-9--------84244
Q 006515 309 GQIPTSLQ-------DLSTLQYLYLGNNNLSGELPVNII--APNLIALDVSYNPLSGNLPRNFAK-G--------GLSMK 370 (642)
Q Consensus 309 ~~~p~~l~-------~l~~L~~L~L~~N~l~~~~p~~~~--~~~L~~LdLs~N~l~g~ip~~~~~-~--------~l~~~ 370 (642)
+.+|..+. .+++|+.|++++|++. .+|.... +++|+.|++++|.++ .+|..+.. . .|+.+
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEE
T ss_pred CCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEE
T ss_conf 8652442002201125898888977279668-678788715898898989799788-73978840440012214773389
Q ss_pred ECC
Q ss_conf 168
Q 006515 371 ALG 373 (642)
Q Consensus 371 ~~~ 373 (642)
.++
T Consensus 494 ~Ls 496 (636)
T 4eco_A 494 DLR 496 (636)
T ss_dssp ECC
T ss_pred ECC
T ss_conf 896
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=307.86 Aligned_cols=326 Identities=18% Similarity=0.258 Sum_probs=216.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCC----CCC--CCCCCCCCC---C---CCCCCEEEECCCCCCCEEEEEEECCC
Q ss_conf 48899889999999999527899999999----999--999988788---8---99998375069997736699981788
Q 006515 23 QTSTDSAEVDALNKLIDYWNLRSKINLTT----IDP--CTRNASWAS---E---NANPRVACDCTSNSCHITHLKIYALD 90 (642)
Q Consensus 23 ~~~~~~~~~~al~~~~~~~~~~~~w~~~~----~d~--c~~~~~w~~---~---~~~~~v~C~~~~~~~~i~~L~l~~~~ 90 (642)
.+++..+|++||.+|++.++.+ +|+... .+| |. |.. . ....||.|++ .++|+.|++.+++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-~W~~~~~~~~~~~~~C~----W~~~~~~~~w~~~~GV~C~~---~~~V~~L~Ls~~~ 334 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLN----WNFNKELDMWGDQPGVDLDN---NGRVTGLSLAGFG 334 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-GCCCCCSSCSSCCCCCS----CCCSSCGGGTTCCTTEEECT---TSCEEEEECTTTC
T ss_pred CCCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCEEECC---CCCEEEEECCCCC
T ss_conf 4546317899999999973799-98868986533677640----34666545335768428369---9979899872478
Q ss_pred CCCCCCHHHCCCCCCCEEEC-CCCCCCCC---------------------------------------------------
Q ss_conf 78777243209999979986-69989988---------------------------------------------------
Q 006515 91 IMGELPSELFMLRKLMDLNL-GQNVLNGS--------------------------------------------------- 118 (642)
Q Consensus 91 l~~~lp~~l~~l~~L~~L~L-s~n~l~~~--------------------------------------------------- 118 (642)
+.|.+|+++++|++|++|+| ++|.+.|.
T Consensus 335 L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~ 414 (876)
T 4ecn_A 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414 (876)
T ss_dssp CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred CCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99948557741555628430125633566642223445441156788877766665420375111567878776507332
Q ss_pred -------------------------CCHHHCCCCCCCEEECCCCCCCC-----------------CCCCCCC--CCCCCC
Q ss_conf -------------------------84422299888689810577988-----------------7881236--999986
Q 006515 119 -------------------------IPAEIGQLSNMQYLSLGINNFTG-----------------RVPTELG--NLTKLI 154 (642)
Q Consensus 119 -------------------------~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~ 154 (642)
+|..++++++|++|+|++|.+++ .+|..++ ++++|+
T Consensus 415 ~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~ 494 (876)
T 4ecn_A 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494 (876)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred CCCCCCCCCCHHHCEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 43222354423120405666761521188756999878979688678874653223322222244587444025599977
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCCEEEECCCC-CCC-CCCHHHCCCC-------CCCEEEECCCCCCCCCCH--HCCCCC
Q ss_conf 89922433899995200599999989823678-999-8811112998-------874787037747888840--006955
Q 006515 155 SLSFSSNNFFGPLPKELGKLTSLQQLYIDSSG-VTG-SIPQEFANLK-------SLRILWASDNLFTGKIPE--FFGTLT 223 (642)
Q Consensus 155 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~p~--~l~~l~ 223 (642)
+|+|++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..++ +|+.|++++|.+. .+|. .+..++
T Consensus 495 ~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp EEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred EEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCCHHHHHCCC
T ss_conf 8987189887527387737999899989689876566461778752330155688319982289477-618723551589
Q ss_pred CCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCC-CCEEECCCCCCCCCCCHHHCCCCC--CCEE
Q ss_conf 3248980698798986154315999996884899999976055412878-776624465478889211248855--5452
Q 006515 224 ELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKS-LSILSLRNCRVSGKIPDQLGTFAK--LQLL 300 (642)
Q Consensus 224 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~L~~n~l~~~~p~~~~~l~~--L~~L 300 (642)
+|+.|++++|.++ .+| .+..+++|+.|++++|.+. ..+..+..+++ |+.|+|++|.+. .+|..+..++. |+.|
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE
T ss_pred CCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCEE
T ss_conf 8898989799825-621-2247985007987187125-035877525114989998499787-47644522556777889
Q ss_pred CCCCCCCCCCCCHHH---C--CCCCCCEEECCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 122420479861221---3--99999699875885998789666--799853999107969866892213
Q 006515 301 DLSFNKLTGQIPTSL---Q--DLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLPRNFA 363 (642)
Q Consensus 301 ~Ls~n~l~~~~p~~l---~--~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~LdLs~N~l~g~ip~~~~ 363 (642)
++++|.+.+.+|... . .+++|+.|+|++|++. .+|... .+++|+.|++++|.++ .+|..+.
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 717 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSL 717 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSS
T ss_pred ECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHH
T ss_conf 7708847886432000000135797688983199688-659788713898899989899688-5496784
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=298.18 Aligned_cols=136 Identities=26% Similarity=0.305 Sum_probs=75.9
Q ss_pred CCCCCEEEEEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHH-CCCCCCCEEECCCCCCCCCCCCC---CC-
Q ss_conf 9977366999817887877724--32099999799866998998884422-29988868981057798878812---36-
Q 006515 76 SNSCHITHLKIYALDIMGELPS--ELFMLRKLMDLNLGQNVLNGSIPAEI-GQLSNMQYLSLGINNFTGRVPTE---LG- 148 (642)
Q Consensus 76 ~~~~~i~~L~l~~~~l~~~lp~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~---l~- 148 (642)
....+++.|+++++.+.+.+|. .+.++++|++|++++|.+.+..|..+ .++++|++|++++|.+++..|.. +.
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred CCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCC
T ss_conf 45788998989898578707896787278899989896882677479778563889998989798358858715566435
Q ss_pred ---------------------CCCCCCEEEEECCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEEEC
Q ss_conf ---------------------99998689922433899995200599999989823678999881111299887478703
Q 006515 149 ---------------------NLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWAS 207 (642)
Q Consensus 149 ---------------------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~ 207 (642)
.+++|++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..+..+++|+.|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 898898989788034657845478689898928827887711-1269999989794885878165777448888989898
Q ss_pred CCCCC
Q ss_conf 77478
Q 006515 208 DNLFT 212 (642)
Q Consensus 208 ~n~l~ 212 (642)
+|.+.
T Consensus 256 ~n~l~ 260 (768)
T 3rgz_A 256 SNQFV 260 (768)
T ss_dssp SSCCE
T ss_pred CCCCC
T ss_conf 88665
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=1.00 E-value=1 Score=292.92 Aligned_cols=298 Identities=29% Similarity=0.444 Sum_probs=242.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCC--CCCHH
Q ss_conf 889988999999999952789---9999999999999988788899998375069997736699981788787--77243
Q 006515 24 TSTDSAEVDALNKLIDYWNLR---SKINLTTIDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMG--ELPSE 98 (642)
Q Consensus 24 ~~~~~~~~~al~~~~~~~~~~---~~w~~~~~d~c~~~~~w~~~~~~~~v~C~~~~~~~~i~~L~l~~~~l~~--~lp~~ 98 (642)
+.|.++|++||.+||+.++.+ .+|+.. .|||.. .| .||.|+......+|+.|++.++.+.+ .+|..
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~~l~~W~~~-~~~C~~--~w------~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~ 71 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPT-TDCCNR--TW------LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS 71 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCGGGTTCCTT-SCTTTT--CS------TTEEECCSSSCCCEEEEEEECCCCSSCEECCGG
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCC--CC------CCEEECCCCCCCEEEEEECCCCCCCCCCCCCHH
T ss_conf 988989999999999866796202477788-997768--78------625857898776488998889974687656965
Q ss_pred HCCCCCCCEEECCC-CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCC
Q ss_conf 20999997998669-98998884422299888689810577988788123699998689922433899995200599999
Q 006515 99 LFMLRKLMDLNLGQ-NVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSL 177 (642)
Q Consensus 99 l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 177 (642)
+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred HHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 74788888632788886366589668467899979896884677489788378988989697783577278678459887
Q ss_pred CEEEECCCCCCCCCCHHHCCCC-CCCEEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf 9898236789998811112998-874787037747888840006955324898069879898615431599999688489
Q 006515 178 QQLYIDSSGVTGSIPQEFANLK-SLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGD 256 (642)
Q Consensus 178 ~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 256 (642)
++|++++|.+.+.+|..+..++ +|+.|++++|.+.+.+|..+..++ |+.|++++|.+++..+..+..+++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~-------- 222 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN-------- 222 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC--------
T ss_pred CEEECCCCCCCCCCCHHHHHHHHCCCEEECCCCEEECCCCHHHHCCC-CCEEECCCCCCCCCCCHHHHCCCC--------
T ss_conf 86889488445818778863453185998859862152776886881-368979178465837777746788--------
Q ss_pred CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC
Q ss_conf 99999760554128787766244654788892112488555452122420479861221399999699875885998789
Q 006515 257 LSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELP 336 (642)
Q Consensus 257 ~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 336 (642)
|+.|++++|.+.+.++. +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|
T Consensus 223 ----------------L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 223 ----------------TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp ----------------CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred ----------------CCEEECCCCCEEEECCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf ----------------87898977721422586-3446878989892882168487578668478989886883305179
Q ss_pred CCCCCCCCCEEECCCCC-CCC
Q ss_conf 66679985399910796-986
Q 006515 337 VNIIAPNLIALDVSYNP-LSG 356 (642)
Q Consensus 337 ~~~~~~~L~~LdLs~N~-l~g 356 (642)
....+++|+.+++++|+ +.|
T Consensus 286 ~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 286 QGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CSTTGGGSCGGGTCSSSEEES
T ss_pred CCCCCCCCCHHHHCCCCCCCC
T ss_conf 885325458677568997669
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=1.00 E-value=1 Score=267.50 Aligned_cols=296 Identities=20% Similarity=0.221 Sum_probs=212.2
Q ss_pred CCCEEEEEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 773669998178878777243209999979986699899888-4422299888689810577988788123699998689
Q 006515 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSI-PAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (642)
Q Consensus 78 ~~~i~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 156 (642)
..+++.|+++++.+.+..|..+.++++|++|++++|.+.+.+ +..|..+++|++|++++|.+.+..|..+.++++|++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEEECCCCCCCCCHHHHCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEE
T ss_conf 87567798068835747865750476555788768854426784513366557877289885376586452575348897
Q ss_pred EEECCCCCCCCCHH--HCCCCCCCEEEECCCCCCCCCCHH-HCCCCCCCEEEECCCCCCCCCCHHCCCC-----------
Q ss_conf 92243389999520--059999998982367899988111-1299887478703774788884000695-----------
Q 006515 157 SFSSNNFFGPLPKE--LGKLTSLQQLYIDSSGVTGSIPQE-FANLKSLRILWASDNLFTGKIPEFFGTL----------- 222 (642)
Q Consensus 157 ~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~p~~l~~l----------- 222 (642)
++++|.+.+..+.. +..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+.+..+..+..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCC
T ss_conf 68788877554470212681208998799996675480020077774667867778656557556310142000102455
Q ss_pred -----------------------CCCCEEECCCCCCCCCCHHHHHCC---CCCCEEECCCCCCCCCC----------HHH
Q ss_conf -----------------------532489806987989861543159---99996884899999976----------055
Q 006515 223 -----------------------TELADLRLQGTLLEGPIPRSFRAL---NKLEDLRIGDLSAEDST----------LDF 266 (642)
Q Consensus 223 -----------------------~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~L~l~~~~~~~~~----------~~~ 266 (642)
++|+.|++++|.+.+..+..+... .+|+.|+++++...... ...
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred CCCCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCC
T ss_conf 67242253110463213431346501268567886653230334212355635567503443432322102203675233
Q ss_pred HH--CCCCCCEEECCCCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCC-CCC
Q ss_conf 41--287877662446547888921124885554521224204798612213999996998758859987896667-998
Q 006515 267 LE--SQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-APN 343 (642)
Q Consensus 267 l~--~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~~~ 343 (642)
+. ..++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. +++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred CCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 34434567328984376201346545054777788889988304568667548656878989898668749667267335
Q ss_pred CCEEECCCCCCCCCCCCCCCC-CCCEEEECC
Q ss_conf 539991079698668922137-984244168
Q 006515 344 LIALDVSYNPLSGNLPRNFAK-GGLSMKALG 373 (642)
Q Consensus 344 L~~LdLs~N~l~g~ip~~~~~-~~l~~~~~~ 373 (642)
|+.|++++|.+++..|..+.. +.|+.+.++
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCHHHCCCCCCCCEEECC
T ss_conf 8789898996352596562466566489899
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=261.22 Aligned_cols=274 Identities=20% Similarity=0.312 Sum_probs=241.9
Q ss_pred CCHHHCCCCCCCEEECCCCCCCCC-----------------CCHHHC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 724320999997998669989988-----------------844222--9988868981057798878812369999868
Q 006515 95 LPSELFMLRKLMDLNLGQNVLNGS-----------------IPAEIG--QLSNMQYLSLGINNFTGRVPTELGNLTKLIS 155 (642)
Q Consensus 95 lp~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 155 (642)
+|..+.++++|++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCE
T ss_conf 78777256478789886882366423221222221001024863220044687888980488577628388834999788
Q ss_pred EEEECCC-CCC-CCCHHHCCC------CCCCEEEECCCCCCCCCCH--HHCCCCCCCEEEECCCCCCCCCCHHCCCCCCC
Q ss_conf 9922433-899-995200599------9999898236789998811--11299887478703774788884000695532
Q 006515 156 LSFSSNN-FFG-PLPKELGKL------TSLQQLYIDSSGVTGSIPQ--EFANLKSLRILWASDNLFTGKIPEFFGTLTEL 225 (642)
Q Consensus 156 L~L~~n~-l~~-~~p~~l~~l------~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 225 (642)
|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .+..+++|+.|++++|.+.|.+| .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCC
T ss_conf 97847988766533578875430465788888989799377-66765554257888989690880705166-64788988
Q ss_pred CEEECCCCCCCCCCHHHHHCCCC-CCEEECCCCCCCCCCHHHHHCC--CCCCEEECCCCCCCCCCCHHHC-------CCC
Q ss_conf 48980698798986154315999-9968848999999760554128--7877662446547888921124-------885
Q 006515 226 ADLRLQGTLLEGPIPRSFRALNK-LEDLRIGDLSAEDSTLDFLESQ--KSLSILSLRNCRVSGKIPDQLG-------TFA 295 (642)
Q Consensus 226 ~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~L~~n~l~~~~p~~~~-------~l~ 295 (642)
+.|++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+... ++|+.|++++|.+.+.+|..+. .++
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf 98989899403-033756510236868985298275-4466553334576688977488578865244200220112589
Q ss_pred CCCEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCC--CC-------CCCEEECCCCCCCCCCCCCCC--C
Q ss_conf 554521224204798612213999996998758859987896667--99-------853999107969866892213--7
Q 006515 296 KLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII--AP-------NLIALDVSYNPLSGNLPRNFA--K 364 (642)
Q Consensus 296 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~~-------~L~~LdLs~N~l~g~ip~~~~--~ 364 (642)
+|+.|++++|.+.+..+..+..+++|+.|+|++|+++ .+|.... .. +|+.|++++|.++ .+|..+. .
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCC
T ss_conf 8888977279668678788715898898989799788-7397884044001221477338989699388-1685453445
Q ss_pred -CCCEEEECCC
Q ss_conf -9842441686
Q 006515 365 -GGLSMKALGM 374 (642)
Q Consensus 365 -~~l~~~~~~~ 374 (642)
+.|+.+.++.
T Consensus 512 l~~L~~L~Ls~ 522 (636)
T 4eco_A 512 LPYLVGIDLSY 522 (636)
T ss_dssp CTTCCEEECCS
T ss_pred CCCCCEEECCC
T ss_conf 88769898989
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=1.00 E-value=1 Score=257.81 Aligned_cols=271 Identities=18% Similarity=0.225 Sum_probs=114.2
Q ss_pred CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCEEE
Q ss_conf 99979986699899888442229988868981057798878-81236999986899224338999952005999999898
Q 006515 103 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRV-PTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 181 (642)
Q Consensus 103 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 181 (642)
++|++|++++|.+.+..|..|.++++|++|++++|.+.+.+ +..|..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEEECCCCCCCCCHHHHCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEE
T ss_conf 75677980688357478657504765557887688544267845133665578772898853765864525753488976
Q ss_pred ECCCCCCCCCCHH--HCCCCCCCEEEECCCCCCCCCCHH-CCCCCCCCEEECCCCCCCCCCHHHHHCC--CCCCEEECCC
Q ss_conf 2367899988111--129988747870377478888400-0695532489806987989861543159--9999688489
Q 006515 182 IDSSGVTGSIPQE--FANLKSLRILWASDNLFTGKIPEF-FGTLTELADLRLQGTLLEGPIPRSFRAL--NKLEDLRIGD 256 (642)
Q Consensus 182 Ls~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~p~~~~~l--~~L~~L~l~~ 256 (642)
+++|.+.+..+.. +..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf 87888775544702126812089987999966754800200777746678677786565575563101420001024556
Q ss_pred CCCCCCCHHH--------HHCCCCCCEEECCCCCCCCCCCHHHCC-----------------------------------
Q ss_conf 9999976055--------412878776624465478889211248-----------------------------------
Q 006515 257 LSAEDSTLDF--------LESQKSLSILSLRNCRVSGKIPDQLGT----------------------------------- 293 (642)
Q Consensus 257 ~~~~~~~~~~--------l~~~~~L~~L~L~~n~l~~~~p~~~~~----------------------------------- 293 (642)
+.+....... +..+++|+.|++++|.+.+..+..+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CCCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCC
T ss_conf 72422531104632134313465012685678866532303342123556355675034434323221022036752333
Q ss_pred ----CCCCCEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCC-CCC
Q ss_conf ----8555452122420479861221399999699875885998789666-7998539991079698668922137-984
Q 006515 294 ----FAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGL 367 (642)
Q Consensus 294 ----l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~LdLs~N~l~g~ip~~~~~-~~l 367 (642)
.++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|..+ .+++|+.|++++|.+++..|..+.. +.|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred CCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 44345673289843762013465450547777888899883045686675486568789898986687496672673358
Q ss_pred EEEECC
Q ss_conf 244168
Q 006515 368 SMKALG 373 (642)
Q Consensus 368 ~~~~~~ 373 (642)
+.+.++
T Consensus 350 ~~L~Ls 355 (455)
T 3v47_A 350 EVLDLS 355 (455)
T ss_dssp CEEECC
T ss_pred CEEECC
T ss_conf 789898
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=257.62 Aligned_cols=297 Identities=23% Similarity=0.210 Sum_probs=250.9
Q ss_pred CCCCEEEEEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 97736699981788787772432099999799866998998884422299888689810577988788123699998689
Q 006515 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (642)
Q Consensus 77 ~~~~i~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 156 (642)
...+++.|+++++.+.+..+..+.++++|++|+|++|.+.+..|..|.++++|++|++++|.+....+..|.++++|++|
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 89998389787993645797671589878998899994377085032087368998899996874383202587777978
Q ss_pred EEECCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCC
Q ss_conf 92243389999520059999998982367899988111129988747870377478888400069553248980698798
Q 006515 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (642)
Q Consensus 157 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 236 (642)
++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
T ss_conf 89999566379657166435998989999555108400358899998979899586147457222677768869999575
Q ss_pred CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCHHHC
Q ss_conf 98615431599999688489999997605541287877662446547888921124885554521224204798612213
Q 006515 237 GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQ 316 (642)
Q Consensus 237 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 316 (642)
+..+..+..+++|+.|+++++......+.......+|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EECHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCC
T ss_conf 73864404675566135888866555683324676325797869933554977842713068628999937846821341
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCC-CCCEEEECC
Q ss_conf 999996998758859987896667-998539991079698668922137-984244168
Q 006515 317 DLSTLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPLSGNLPRNFAK-GGLSMKALG 373 (642)
Q Consensus 317 ~l~~L~~L~L~~N~l~~~~p~~~~-~~~L~~LdLs~N~l~g~ip~~~~~-~~l~~~~~~ 373 (642)
.+++|+.|+|++|++.+..|..+. +++|+.|++++|.+++..+..+.. +.|+.+.++
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred CCCCCCEEECCCCCCCEECHHHHCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECC
T ss_conf 55257977898982655898884476358989899995764398675787666789856
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=257.44 Aligned_cols=271 Identities=20% Similarity=0.315 Sum_probs=193.9
Q ss_pred CCHHHCCCCCCCEEECCCCCCCC-----------------CCCHHHC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 72432099999799866998998-----------------8844222--9988868981057798878812369999868
Q 006515 95 LPSELFMLRKLMDLNLGQNVLNG-----------------SIPAEIG--QLSNMQYLSLGINNFTGRVPTELGNLTKLIS 155 (642)
Q Consensus 95 lp~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 155 (642)
+|..+.++++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCE
T ss_conf 11887569998789796886788746532233222222445874440255999778987189887527387737999899
Q ss_pred EEEECCC-CCC-CCCHHHCCCC-------CCCEEEECCCCCCCCCCH--HHCCCCCCCEEEECCCCCCCCCCHHCCCCCC
Q ss_conf 9922433-899-9952005999-------999898236789998811--1129988747870377478888400069553
Q 006515 156 LSFSSNN-FFG-PLPKELGKLT-------SLQQLYIDSSGVTGSIPQ--EFANLKSLRILWASDNLFTGKIPEFFGTLTE 224 (642)
Q Consensus 156 L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 224 (642)
|++++|+ +++ .+|..+..++ +|++|++++|.+. .+|. .+..+++|+.|++++|.+. .+| .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCCHHHHHCCCCCCEEECCCCCCC-CCH-HHCCCCC
T ss_conf 989689876566461778752330155688319982289477-6187235515898898989799825-621-2247985
Q ss_pred CCEEECCCCCCCCCCHHHHHCCCC-CCEEECCCCCCCCCCHHHHHCC--CCCCEEECCCCCCCCCCCHH---HC--CCCC
Q ss_conf 248980698798986154315999-9968848999999760554128--78776624465478889211---24--8855
Q 006515 225 LADLRLQGTLLEGPIPRSFRALNK-LEDLRIGDLSAEDSTLDFLESQ--KSLSILSLRNCRVSGKIPDQ---LG--TFAK 296 (642)
Q Consensus 225 L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~L~~n~l~~~~p~~---~~--~l~~ 296 (642)
|+.|++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+... ++|+.|++++|.+.+.+|.. +. .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred CEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 007987187125-035877525114989998499787-476445225567778897708847886432000000135797
Q ss_pred CCEECCCCCCCCCCCCHHH-CCCCCCCEEECCCCCCCCCCCCCCCC-C--------CCCEEECCCCCCCCCCCCCCC--C
Q ss_conf 5452122420479861221-39999969987588599878966679-9--------853999107969866892213--7
Q 006515 297 LQLLDLSFNKLTGQIPTSL-QDLSTLQYLYLGNNNLSGELPVNIIA-P--------NLIALDVSYNPLSGNLPRNFA--K 364 (642)
Q Consensus 297 L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~~-~--------~L~~LdLs~N~l~g~ip~~~~--~ 364 (642)
|+.|++++|.+. .+|..+ ..+++|+.|+|++|++. .+|..... . +|+.|++++|.++ .+|..+. .
T Consensus 675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred CCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHHHHCC
T ss_conf 688983199688-659788713898899989899688-5496784555334321487158988899786-6527762442
Q ss_pred -CCCEEEECC
Q ss_conf -984244168
Q 006515 365 -GGLSMKALG 373 (642)
Q Consensus 365 -~~l~~~~~~ 373 (642)
+.|+.+.++
T Consensus 752 l~~L~~L~Ls 761 (876)
T 4ecn_A 752 LPYLSNMDVS 761 (876)
T ss_dssp CTTCCEEECC
T ss_pred CCCCCEEEEC
T ss_conf 7986989908
Done!