BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006516
(642 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21848|ALBU1_SALSA Serum albumin 1 OS=Salmo salar GN=alb1 PE=2 SV=1
Length = 608
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 93 RNFLEYCCFRTLALSTQVTGHLADKKFRRLTYDVMLAWEVPAASSQPLLNVDGDATVG-- 150
+N L+ CC +T A T D K ++ D+ L E+PAA D A VG
Sbjct: 101 KNDLKMCCEKTAAERTHC---FVDHK-AKIPRDLSLKAELPAADQCEDFKKDHKAFVGRF 156
Query: 151 MEAFSRIAPAVPIIANVVISENLFEVLTSSTGGRLQYSIFNKYITGLERAIKKMKTQSES 210
+ FS+ P +P + I++ EVLT+ G + F+ + A+ MK +E
Sbjct: 157 IFKFSKSNPMLPPHVVLAIAKGYGEVLTTCCGEAEAQTCFDTKKATFQHAV--MKRVAEL 214
Query: 211 SILSAIRSSRGEKILE 226
L + G+++++
Sbjct: 215 RSLCIVHKKYGDRVVK 230
>sp|Q03156|ALBU2_SALSA Serum albumin 2 OS=Salmo salar GN=alb2 PE=2 SV=1
Length = 608
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 93 RNFLEYCCFRTLALSTQVTGHLADKKFRRLTYDVMLAWEVPAASSQPLLNVDGDATVG-- 150
+N L+ CC +T A T D K ++ D+ L E+PAA D A VG
Sbjct: 101 KNDLKMCCEKTAAERTHC---FVDHK-AKIPRDLSLKAELPAADQCEDFKKDHKAFVGRF 156
Query: 151 MEAFSRIAPAVPIIANVVISENLFEVLTSSTGGRLQYSIFNKYITGLERAIKKMKTQSES 210
+ FS+ P +P + I++ EVLT+ G + F+ + AI K + +S
Sbjct: 157 IFKFSKSNPMLPPHVVLAIAKGYGEVLTTCCGEAEAQTCFDTKKATFQHAIAKRVAELKS 216
Query: 211 SILSAIRSSRGEKILE 226
L + G+++++
Sbjct: 217 --LCIVHKKYGDRVVK 230
>sp|Q5U4T9|MBOA7_XENLA Lysophospholipid acyltransferase 7 OS=Xenopus laevis GN=mboat7 PE=2
SV=1
Length = 474
Score = 37.0 bits (84), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 9/124 (7%)
Query: 437 FGPSSSNNSIEAGAGLVVGEIAVGEMSPLERTVKESRNSYKKVVQAQETVDGVKVDGIDT 496
FG + +G G V E +PLER + ++ ++ ET+ + G D
Sbjct: 260 FGAYPVSAKSRSGGGPTV------EYAPLERNAEGAK---VELEYDYETIKNIDCYGADF 310
Query: 497 NLAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAI 556
+ V + M V WL Y + P+KS VF +T ++ W G + F I
Sbjct: 311 CVKVKDGMRYWNMSVQWWLAQYIYKNSPVKSLVFGSAWTMLVSAYWHGIHPGYYMSFLTI 370
Query: 557 FMVL 560
+ L
Sbjct: 371 PLCL 374
>sp|Q3V0A6|CB078_MOUSE Uncharacterized protein C2orf78 homolog OS=Mus musculus GN=Gm5592
PE=2 SV=1
Length = 857
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 18/188 (9%)
Query: 104 LALSTQVTGHLADKKFRRL-TYDVMLAWEVPAASSQPLLNVDGDATVGMEAFSRIAPAVP 162
L+ S Q G + + F R+ T DV AW +P+ASS L + G+A + A +
Sbjct: 24 LSNSIQPAGTVCN--FSRVSTPDVSSAWLLPSASSTSLQPLMGNAYLNPHAGT------- 74
Query: 163 IIANVVISENLFEVLTSSTGGRLQYSIFNKYITGLERAIKK--MKTQSESSILSAIR-SS 219
+ V+ + T S G L++ G E A+++ MK + + LS++ ++
Sbjct: 75 TMLTVLTEQGQISTSTPSYPGALKWDCTGS-THGREDALQEFNMKLIDQDTTLSSLAVTN 133
Query: 220 RGEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHAL---YFEAHRVVSYEKAKIYDL-A 275
+ +KIL+ + V P L + P ++ ++L Y E +V YE + L A
Sbjct: 134 QSDKILDPNVIVPFHPTLSSSFVQITPSQMPNQGYSLAPSYQEGSQVYYYEHNNLGPLIA 193
Query: 276 EDLKQVVK 283
+ Q +K
Sbjct: 194 GEFGQCLK 201
>sp|Q8CPQ1|ATL_STAES Bifunctional autolysin OS=Staphylococcus epidermidis (strain ATCC
12228) GN=atl PE=3 SV=1
Length = 1335
Score = 33.1 bits (74), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 226 EVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPE 285
E DG T V H IS + G TDHA + R +Y A++YDL + K ++K +
Sbjct: 457 ENDGRGT---VWTHAAISNFLGG---TDHADPHQYLRSHNYSYAELYDLIYE-KYLIKTK 509
Query: 286 LTGPWGT 292
PWGT
Sbjct: 510 QVAPWGT 516
>sp|Q5HQB9|ATL_STAEQ Bifunctional autolysin OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=atl PE=3 SV=1
Length = 1335
Score = 33.1 bits (74), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 226 EVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPE 285
E DG T V H IS + G TDHA + R +Y A++YDL + K ++K +
Sbjct: 457 ENDGRGT---VWTHAAISNFLGG---TDHADPHQYLRSHNYSYAELYDLIYE-KYLIKTK 509
Query: 286 LTGPWGT 292
PWGT
Sbjct: 510 QVAPWGT 516
>sp|O33635|ATL_STAEP Bifunctional autolysin OS=Staphylococcus epidermidis GN=atl PE=1
SV=1
Length = 1335
Score = 33.1 bits (74), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 226 EVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPE 285
E DG T V H IS + G TDHA + R +Y A++YDL + K ++K +
Sbjct: 457 ENDGRGT---VWTHAAISNFLGG---TDHADPHQYLRSHNYSYAELYDLIYE-KYLIKTK 509
Query: 286 LTGPWGT 292
PWGT
Sbjct: 510 QVAPWGT 516
>sp|Q5N2Q7|SECA_SYNP6 Protein translocase subunit SecA OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secA PE=3 SV=1
Length = 948
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 9 NMLEGLVREGSFKWLLGSRSSFDDEFEEMERSPSAGRNWIQELSPLANIVVRRCSK-ILG 67
N+LE + S K L+ + F + +++ SP+A + + EL P A V+R SK +LG
Sbjct: 25 NLLEEDIEPLSDKDLIAKTAEFRQKLDKVSHSPAAEKELLAELLPEAFAVMREASKRVLG 84
Query: 68 ISSSELQ 74
+ ++Q
Sbjct: 85 LRHFDVQ 91
>sp|Q55357|SECA_SYNE7 Protein translocase subunit SecA OS=Synechococcus elongatus
(strain PCC 7942) GN=secA PE=3 SV=1
Length = 948
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 9 NMLEGLVREGSFKWLLGSRSSFDDEFEEMERSPSAGRNWIQELSPLANIVVRRCSK-ILG 67
N+LE + S K L+ + F + +++ SP+A + + EL P A V+R SK +LG
Sbjct: 25 NLLEEDIEPLSDKDLIAKTAEFRQKLDKVSHSPAAEKELLAELLPEAFAVMREASKRVLG 84
Query: 68 ISSSELQ 74
+ ++Q
Sbjct: 85 LRHFDVQ 91
>sp|Q6IC98|GRAM4_HUMAN GRAM domain-containing protein 4 OS=Homo sapiens GN=GRAMD4 PE=1
SV=1
Length = 578
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 11/155 (7%)
Query: 484 ETVDGVKVDGIDTNLAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWL 543
ET + + + N+ +K P + L +L+ W S++ FT + W
Sbjct: 191 ETEEPLSARRLTENMRRLKRGAKPVTNFVKNLSALSDWYSVYTSAI---AFTVYMNAVWH 247
Query: 544 GYALALLLIFFAIFMVLTRFLNQG-----KPVDEVKVIAPPPMNTM---EQLLAVQNAIS 595
G+A+ L L + + L + +G V EV PP + E+ V +
Sbjct: 248 GWAIPLFLFLAILRLSLNYLIARGWRIQWSIVPEVSEPVEPPKEDLTVSEKFQLVLDVAQ 307
Query: 596 QAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGL 630
+A+ L L K++ L + + P+ + K V L
Sbjct: 308 KAQNLFGKMADILEKIKNLFMWVQPEITQKLYVAL 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,923,312
Number of Sequences: 539616
Number of extensions: 8454103
Number of successful extensions: 23747
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 23745
Number of HSP's gapped (non-prelim): 11
length of query: 642
length of database: 191,569,459
effective HSP length: 124
effective length of query: 518
effective length of database: 124,657,075
effective search space: 64572364850
effective search space used: 64572364850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)