Query 006516
Match_columns 642
No_of_seqs 67 out of 69
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 00:25:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04842 DUF639: Plant protein 100.0 9E-243 2E-247 1963.9 52.4 601 38-640 11-632 (683)
2 PF06398 Pex24p: Integral pero 95.9 0.14 3.1E-06 54.4 13.5 52 504-555 21-73 (359)
3 PF08372 PRT_C: Plant phosphor 90.2 0.76 1.6E-05 45.1 6.5 57 505-564 75-131 (156)
4 PF11696 DUF3292: Protein of u 82.8 2 4.3E-05 50.3 5.5 55 505-562 105-159 (642)
5 PF02453 Reticulon: Reticulon; 76.0 0.23 5E-06 46.4 -3.8 116 516-637 2-126 (169)
6 cd01201 Neurobeachin Neurobeac 71.3 2.2 4.8E-05 39.8 1.4 18 243-260 16-33 (108)
7 PF14844 PH_BEACH: PH domain a 52.2 11 0.00023 33.5 2.2 67 241-315 13-93 (106)
8 PF02893 GRAM: GRAM domain; I 51.1 11 0.00025 30.8 2.1 41 216-262 7-47 (69)
9 KOG3850 Predicted membrane pro 50.2 27 0.00059 39.1 5.3 80 464-543 350-442 (455)
10 PF02785 Biotin_carb_C: Biotin 47.4 8.1 0.00018 35.6 0.7 25 481-505 67-91 (107)
11 PF08372 PRT_C: Plant phosphor 44.5 1.2E+02 0.0026 30.0 8.3 94 547-640 1-114 (156)
12 smart00878 Biotin_carb_C Bioti 37.3 15 0.00032 33.8 0.8 24 482-505 68-91 (107)
13 smart00568 GRAM domain in gluc 36.9 35 0.00076 27.2 2.8 39 218-263 2-40 (61)
14 PF09125 COX2-transmemb: Cytoc 36.8 42 0.00091 26.3 3.0 19 539-557 13-31 (38)
15 PF10267 Tmemb_cc2: Predicted 36.6 49 0.0011 37.1 4.8 45 463-511 301-346 (395)
16 COG2510 Predicted membrane pro 31.5 1.3E+02 0.0029 29.5 6.1 59 488-546 23-85 (140)
17 PF10805 DUF2730: Protein of u 29.5 1.6E+02 0.0034 27.1 6.0 29 537-565 3-31 (106)
18 PF03741 TerC: Integral membra 28.7 1.8E+02 0.0039 29.1 6.8 36 528-563 46-82 (183)
19 TIGR00514 accC acetyl-CoA carb 28.1 27 0.00058 38.5 1.0 26 481-506 402-427 (449)
20 PF14470 bPH_3: Bacterial PH d 27.7 83 0.0018 26.6 3.8 41 218-264 1-41 (96)
21 PF05440 MtrB: Tetrahydrometha 25.9 86 0.0019 29.1 3.7 71 153-229 1-74 (97)
22 PRK06111 acetyl-CoA carboxylas 24.5 34 0.00073 37.3 1.0 24 482-505 402-425 (450)
23 COG1803 MgsA Methylglyoxal syn 23.2 32 0.00069 33.5 0.4 75 109-196 66-142 (142)
24 PF06398 Pex24p: Integral pero 22.0 3E+02 0.0065 29.6 7.5 55 503-557 127-182 (359)
25 PRK08463 acetyl-CoA carboxylas 21.6 42 0.00091 37.6 1.0 25 482-506 403-427 (478)
26 PRK07178 pyruvate carboxylase 21.4 43 0.00092 37.5 1.0 28 479-506 399-426 (472)
No 1
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=100.00 E-value=9.4e-243 Score=1963.87 Aligned_cols=601 Identities=58% Similarity=0.936 Sum_probs=567.3
Q ss_pred ccCCcCCCCCCCCCChHHHHHHHHhHHHhCCChHHHHHHhhhccccccCCcchhhhhhhhhhhhhhhhh-hhccCCCCCC
Q 006516 38 ERSPSAGRNWIQELSPLANIVVRRCSKILGISSSELQESFNAEASEAIKHPSRYARNFLEYCCFRTLAL-STQVTGHLAD 116 (642)
Q Consensus 38 ~~~~~~~~~~~~~LS~~An~vV~rcSrilg~s~~~Lq~~Fe~~~~~s~~~~~~yARnlvEyCcfraL~~-~~~~~~~L~D 116 (642)
+++|++.++++|+|||+||+||+|||||||+|++|||++||+++|+++|||+|||||||||||||||++ .+++||||+|
T Consensus 11 ~~~~~~~~~~i~~LS~~An~vV~rcSrilg~~~~~lq~~Fe~~~~~~~~~~~~yaR~lvEyCcfraL~~~~~~~~~~L~D 90 (683)
T PF04842_consen 11 ERSPSTTRSWIPELSPIANSVVERCSRILGVSGEKLQRIFEAEAPPSVKQPSNYARNLVEYCCFRALSRDSSDVHDHLSD 90 (683)
T ss_pred CCCccccCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHhccCCccccchhHHHHHHHHHhhHHHHHhhhcccCccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999 5699999999
Q ss_pred cCccchhhHHHHhcCCCCCCCCCc------------cccCCCCccchhhhhhhccCCccccccchhhhhhHhhhcCCCCc
Q 006516 117 KKFRRLTYDVMLAWEVPAASSQPL------------LNVDGDATVGMEAFSRIAPAVPIIANVVISENLFEVLTSSTGGR 184 (642)
Q Consensus 117 ~~FrRLtFdmMLAWE~P~~~d~~~------------~~v~~~~tVG~eAF~RIAPavp~vADvit~hnlF~aLT~st~gR 184 (642)
++|||||||||||||+|+++|+++ .+||+++|||||||+|||||||+|||+||+||||||||++||||
T Consensus 91 ~~FrRLtfdmMLAWe~P~~~~~~~~~~~~~k~~~~~~~Vd~~~tVG~eAF~rIAPavp~vADvit~hnlF~aLT~stg~R 170 (683)
T PF04842_consen 91 KAFRRLTFDMMLAWEAPYAEDQESNNESSGKESEMPLQVDEEPTVGEEAFVRIAPAVPGVADVITVHNLFEALTASTGGR 170 (683)
T ss_pred hhhhHHHHHHHHHhcCCchhhhcccccccccccccceeccCCCccCHHHHHHhcccCcccccchhHHHHHHHHhcCCCCc
Confidence 999999999999999999999943 44899999999999999999999999999999999999999999
Q ss_pred eehhhHHHHHHHHHHHHHHhhhccccccccccccCCCceEEEeeCCcCcccceeeecccccCcceecccceeeeeecccc
Q 006516 185 LQYSIFNKYITGLERAIKKMKTQSESSILSAIRSSRGEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVV 264 (642)
Q Consensus 185 L~f~~ydkYL~eLdkvik~~k~~~~~~~~~~~~L~~~E~IL~idGt~~tqPVl~hig~saWPGRLTLTn~ALYFEa~gv~ 264 (642)
|||++|||||+|||||||++|+|++++.. +++|++||+|||||||++|||||||||+||||||||||||||||||+||+
T Consensus 171 L~f~~ydkYL~eLdk~ik~~k~~~~~~~~-~~~l~~~E~IL~idgt~~tqPVl~hig~saWPGRLTLTn~ALYFEa~gv~ 249 (683)
T PF04842_consen 171 LHFPIYDKYLKELDKVIKSMKSQSTPSLS-SLELAEDEKILDIDGTATTQPVLQHIGISAWPGRLTLTNHALYFEAIGVV 249 (683)
T ss_pred eeeHHHHHHHHHHHHHHHHHHhccCcccc-ccccCCCcEEEEecCCCCCCchhhccccccCCceeEeecceeeeeecccc
Confidence 99999999999999999999999875444 57999999999999999999999999999999999999999999999999
Q ss_pred ccCcceEeeccccccccccccccCCCccccccceeEeecCCCCCCeEEEccCCCCCchhHHHHHHHHHHHHHHHHhhhcC
Q 006516 265 SYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSLSEPIILEFPELKGHTRRDYWLAIIREILYAHRFINKFQ 344 (642)
Q Consensus 265 ~y~ka~r~DLs~d~~qvvKp~~tGP~Ga~LFDkAV~ykS~s~sEp~vlEFpe~~g~~RRD~WLaiI~EIl~vHkFIrky~ 344 (642)
+||||+|||||+|++|+|||++|||||+|||||||||||++++|||||||||||||+|||||||||+|||++|||||||+
T Consensus 250 sy~~a~r~DLs~d~~q~Vkp~~tGP~Ga~LFDkAV~ykS~s~sEpvvlEFpel~g~~RRD~WlAii~EVl~~HkFIrky~ 329 (683)
T PF04842_consen 250 SYDKAVRYDLSKDLKQVVKPELTGPWGARLFDKAVMYKSSSLSEPVVLEFPELKGHTRRDYWLAIIREVLHVHKFIRKYN 329 (683)
T ss_pred cCCCceEEECCCCccceecccccCCCcccccceeeEEecCCCCCceEEEccccCCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccchhhhcccCCCCccchhHhhhcccchhhhhccCCC--CCCCCc-
Q 006516 345 ITGVQRDEVLSKAVLGILRLQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLANMSNLRELERTNKS--VGGVGM- 421 (642)
Q Consensus 345 ~~~~~k~eals~AilGI~RlqA~qe~~~~~p~~p~~lL~Fsl~~~lP~GD~VLetLa~~~~l~~~~~~~~~--~~~~~~- 421 (642)
++|+|||||||||+|||+||||+|||+|++|+||++||||||||++|+||+||||||+ ++++..+..+.. +....+
T Consensus 330 v~g~~k~eals~AilGI~RlqA~qe~~~i~p~~~k~lL~Fsl~~~lP~GD~VLetLa~-~~~~~~~~~~~~~~~~~~~~~ 408 (683)
T PF04842_consen 330 VEGIQKWEALSRAILGIARLQAVQEMFHISPPHPKSLLQFSLADELPKGDLVLETLAN-SWLKRVSTRSPCDRSSSSQLR 408 (683)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCccceehhhhhhcCCCcccHHHHHHH-HhhhcccccCCcccCccchhc
Confidence 9999999999999999999999999999999999999999999999999999999997 235554433333 223334
Q ss_pred cchhHHHHHhhcCcccCCCCCC-cccccc---cceeeeeeeeccccHHHHHHHHHHhhhhhhhhcccccchhhccCccch
Q 006516 422 YSISAMAMVSNLGFVFGPSSSN-NSIEAG---AGLVVGEIAVGEMSPLERTVKESRNSYKKVVQAQETVDGVKVDGIDTN 497 (642)
Q Consensus 422 ~s~sa~~~l~~~g~~~~~~s~~-~~~~~~---~~~~v~~~~vg~~s~LE~Av~~s~~~~k~ve~aqATid~vkveGI~tN 497 (642)
.|+++...++++|+++...++. .+++.+ +.+..++++|||+++||+||+|||+++|+||+||||||||||||||+|
T Consensus 409 ~s~~~~~~v~~~g~v~~~~~~~~~~~~~~~~~g~v~~~~~~vg~~s~LE~Av~~s~~~~k~ve~AqATid~vkveGI~tN 488 (683)
T PF04842_consen 409 ESSSASQHVSDLGSVYGSSSSESFWKESSIVVGLVLSKEVVVGDTSSLERAVKQSRENSKKVEKAQATIDGVKVEGIDTN 488 (683)
T ss_pred ccchhhhhhhhhhhhhccccccccccccccccccccchheeecCchHHHHHHHHHHHhhceehHHhhhHhHHhhcCCccH
Confidence 4899999999999988554433 221111 134455999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHhhhccccCcchhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhhh-cCCCCcceEEEe
Q 006516 498 LAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAIFMVLTRFL-NQGKPVDEVKVI 576 (642)
Q Consensus 498 vav~kELl~P~~~~~~~l~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~R~~-~~g~~~~ev~V~ 576 (642)
||||||||+|++++++|||+|++||||+||++||++++|||||||++|+||++||++|++|+|+|+. ++|+.+++|+|+
T Consensus 489 vav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~ 568 (683)
T PF04842_consen 489 VAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVR 568 (683)
T ss_pred HHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHhccCcchHHHHHHHHHHHHHhhhhh
Q 006516 577 APPPMNTMEQLLAVQNAISQAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGLLLTGVDFDIC 640 (642)
Q Consensus 577 ~pP~~nT~eqilalQ~Ais~vE~~iQ~~NI~LLK~Rsills~~PqaT~~va~~Ll~~A~vl~v~ 640 (642)
+|||+||||||+|+||||+|+|++||++||+|||+|||+||++|||||+||++|+++|++|+|+
T Consensus 569 ~pP~~nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~Lavv 632 (683)
T PF04842_consen 569 DPPPKNTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVV 632 (683)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 2
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=95.86 E-value=0.14 Score=54.39 Aligned_cols=52 Identities=25% Similarity=0.449 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHhhhccccCcchhhHHHHHHHHHhHhhHHHHH-HHHHHHHHH
Q 006516 504 LLLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYA-LALLLIFFA 555 (642)
Q Consensus 504 Ll~P~~~~~~~l~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~-~p~~Ll~~a 555 (642)
-++|+..+...+.++..|++|..|..|+++.+++++.-.+..+ +|+.++.++
T Consensus 21 ~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~~ 73 (359)
T PF06398_consen 21 PIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLFG 73 (359)
T ss_pred HhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888889999999999999999999999999998888877 786665544
No 3
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=90.23 E-value=0.76 Score=45.06 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHhhhccccCcchhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 006516 505 LLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAIFMVLTRFL 564 (642)
Q Consensus 505 l~P~~~~~~~l~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~R~~ 564 (642)
+==++..+++++.+.+|.+|..|..|+++.+. -.++-|+.|+=.++++.+..+.|+-
T Consensus 75 lgd~At~gERl~allsWrdP~aT~lf~~~clv---~avvly~vP~r~l~l~~gly~~r~P 131 (156)
T PF08372_consen 75 LGDVATQGERLQALLSWRDPRATALFVVFCLV---AAVVLYFVPFRVLVLIWGLYKLRHP 131 (156)
T ss_pred HHHHHHHHHHHHHhhccCCccHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHhcCc
Confidence 33678899999999999999999888766433 3467899999888888888887763
No 4
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=82.76 E-value=2 Score=50.28 Aligned_cols=55 Identities=18% Similarity=0.486 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHhhhccccCcchhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhh
Q 006516 505 LLPAMEVGRWLLSLAYWDDPLKSSVFCLVFTFIICRGWLGYALALLLIFFAIFMVLTR 562 (642)
Q Consensus 505 l~P~~~~~~~l~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~R 562 (642)
+-.+...++.+..|.+|+||..|.+||++- ++.| ++.+++|+++.++.+..++-+
T Consensus 105 ~v~~~~~~khi~RLrSW~eprRT~~fc~vY-f~aW--~~dll~p~~~~~L~~li~~P~ 159 (642)
T PF11696_consen 105 VVGLAAFIKHIARLRSWREPRRTAAFCAVY-FIAW--LLDLLVPAFFAFLIALILSPP 159 (642)
T ss_pred HHHHHHHHHHHHHhhhhcccchHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHhcCcc
Confidence 446777889999999999999999999853 3332 567788888888777776554
No 5
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=76.03 E-value=0.23 Score=46.45 Aligned_cols=116 Identities=22% Similarity=0.226 Sum_probs=31.8
Q ss_pred hhhccccCcchhhHHHHHHHHHhHhhHH------HHHHHHHHHHHHHHHHHhhhhcC-CCCcceEEEeCCCCCCHHHHHH
Q 006516 516 LSLAYWDDPLKSSVFCLVFTFIICRGWL------GYALALLLIFFAIFMVLTRFLNQ-GKPVDEVKVIAPPPMNTMEQLL 588 (642)
Q Consensus 516 ~~l~~We~P~kt~~Fl~~~~~iI~r~wl------~Y~~p~~Ll~~a~~Ml~~R~~~~-g~~~~ev~V~~pP~~nT~eqil 588 (642)
+++..|+||.+|...++....+.+--|+ ..+.-..++.+++.+++.-..+. ++.... |.+..-+.=+
T Consensus 2 ~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 75 (169)
T PF02453_consen 2 ADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKG------PFKEPLDYDL 75 (169)
T ss_dssp ---------------------------------------------------THCCCTCCHHHHC------TTHHHHCHHH
T ss_pred ceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC------CccCCccccc
Confidence 4678999999998776665552222232 22222233333333332221111 110000 2222222212
Q ss_pred HH--HHHHHHHHHHHhhhhhhHhhHHHHHhccCcchHHHHHHHHHHHHHhh
Q 006516 589 AV--QNAISQAEQLIQDGNIFLLKLRGLLLTIFPQASDKFAVGLLLTGVDF 637 (642)
Q Consensus 589 al--Q~Ais~vE~~iQ~~NI~LLK~Rsills~~PqaT~~va~~Ll~~A~vl 637 (642)
.+ +..-.-++...-..|-++-++|.+++...|..+=++++.|.+++-+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg 126 (169)
T PF02453_consen 76 EISEERVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLG 126 (169)
T ss_dssp HHCCHHHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 22 33444466677788999999999999999999999888887766543
No 6
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=71.29 E-value=2.2 Score=39.78 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=16.4
Q ss_pred cccCcceecccceeeeee
Q 006516 243 STWPGRLTLTDHALYFEA 260 (642)
Q Consensus 243 saWPGRLTLTn~ALYFEa 260 (642)
..+||||.+|++.|||++
T Consensus 16 ~vvpG~l~ITt~~lyF~~ 33 (108)
T cd01201 16 VVVKGTLSITTTEIFFEV 33 (108)
T ss_pred EEeccEEEEecCEEEEEE
Confidence 468999999999999995
No 7
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=52.19 E-value=11 Score=33.52 Aligned_cols=67 Identities=27% Similarity=0.359 Sum_probs=37.1
Q ss_pred cccccCcceecccceeeeeec--------------cccccCcceEeeccccccccccccccCCCccccccceeEeecCCC
Q 006516 241 GISTWPGRLTLTDHALYFEAH--------------RVVSYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSL 306 (642)
Q Consensus 241 g~saWPGRLTLTn~ALYFEa~--------------gv~~y~ka~r~DLs~d~~qvvKp~~tGP~Ga~LFDkAV~ykS~s~ 306 (642)
+...+||+|.+|+..+||++. ......+-.++.++ |++.+-|+. =.|=|.|+..=-.+-
T Consensus 13 ~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~I~~v~~RR------yllr~~AlEiF~~dg 85 (106)
T PF14844_consen 13 PLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLS-DIKEVHKRR------YLLRDTALEIFFSDG 85 (106)
T ss_dssp TTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGG-GEEEEEEEE------ETTEEEEEEEEETTS
T ss_pred eeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHH-HhHHHHHHH------hcCcceEEEEEEcCC
Confidence 456799999999999999976 33334555555554 556666665 234466654432221
Q ss_pred CCCeEEEcc
Q 006516 307 SEPIILEFP 315 (642)
Q Consensus 307 sEp~vlEFp 315 (642)
....|=|+
T Consensus 86 -~s~f~~F~ 93 (106)
T PF14844_consen 86 -RSYFFNFE 93 (106)
T ss_dssp --EEEEE-S
T ss_pred -cEEEEEcC
Confidence 35555555
No 8
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=51.13 E-value=11 Score=30.77 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=22.6
Q ss_pred cccCCCceEEEeeCCcCcccceeeecccccCcceecccceeeeeecc
Q 006516 216 IRSSRGEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHR 262 (642)
Q Consensus 216 ~~L~~~E~IL~idGt~~tqPVl~hig~saWPGRLTLTn~ALYFEa~g 262 (642)
+.|..+|.++..-=-.=..+ .....|||.||++=|+|-+..
T Consensus 7 F~lp~~E~li~~~~c~l~~~------~~~~~G~LyiT~~~lcF~s~~ 47 (69)
T PF02893_consen 7 FKLPEEERLIEEYSCALFKS------KIPVQGRLYITNNYLCFYSNK 47 (69)
T ss_dssp ----TT--EEEEEEETTTEE---------EEEEEEEESSEEEEEESS
T ss_pred ccCCCCCeEEEEEEEEEECC------ccceeeEEEECCCEEEEEECC
Confidence 45788999987721111111 667889999999999998743
No 9
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=50.23 E-value=27 Score=39.14 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhhhhhhhcccccchhhccCccc-----------h--HHHHHHhhhhHHHHHHHHhhhccccCcchhhHH
Q 006516 464 PLERTVKESRNSYKKVVQAQETVDGVKVDGIDT-----------N--LAVMKELLLPAMEVGRWLLSLAYWDDPLKSSVF 530 (642)
Q Consensus 464 ~LE~Av~~s~~~~k~ve~aqATid~vkveGI~t-----------N--vav~kELl~P~~~~~~~l~~l~~We~P~kt~~F 530 (642)
.++.|++-|+..--|.|.+|-..+-+-+||.-. | +++|+-||+=++-++...-.|..=..-..+..|
T Consensus 350 dIqEalEscqtrisKlEl~qq~qqv~Q~e~~~na~a~~llgk~iNiiLalm~VlLvfVSTIa~~v~PLmkSR~rt~~t~~ 429 (455)
T KOG3850|consen 350 DIQEALESCQTRISKLELQQQQQQVVQLEGLENAVARRLLGKFINIILALMTVLLVFVSTIANCVSPLMKSRNRTASTFF 429 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHhhhhhHHHHHHH
Confidence 578899999999999999999888888888764 1 578888888888888888888777777777888
Q ss_pred HHHHHHHhHhhHH
Q 006516 531 CLVFTFIICRGWL 543 (642)
Q Consensus 531 l~~~~~iI~r~wl 543 (642)
|+++..+.|+.|=
T Consensus 430 LV~l~~~~wkhwd 442 (455)
T KOG3850|consen 430 LVFLLAFFWKHWD 442 (455)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888884
No 10
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=47.39 E-value=8.1 Score=35.57 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=21.8
Q ss_pred hcccccchhhccCccchHHHHHHhh
Q 006516 481 QAQETVDGVKVDGIDTNLAVMKELL 505 (642)
Q Consensus 481 ~aqATid~vkveGI~tNvav~kELl 505 (642)
+.+..+++..|+|+.||+..++.+|
T Consensus 67 ~l~~AL~e~~I~Gv~TNi~fl~~ll 91 (107)
T PF02785_consen 67 RLRRALAETVIEGVKTNIPFLRALL 91 (107)
T ss_dssp HHHHHHHHHEEESSSHSHHHHHHHH
T ss_pred HHHhhcceEEEECccCCHHHHHHHh
Confidence 3566788899999999999999987
No 11
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=44.50 E-value=1.2e+02 Score=30.05 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCc------c--------eE--EEeCCCCCCH----HHHHHHHHHHHHHHHHHHhhhhh
Q 006516 547 LALLLIFFAIFMVLTRFLNQGKPV------D--------EV--KVIAPPPMNT----MEQLLAVQNAISQAEQLIQDGNI 606 (642)
Q Consensus 547 ~p~~Ll~~a~~Ml~~R~~~~g~~~------~--------ev--~V~~pP~~nT----~eqilalQ~Ais~vE~~iQ~~NI 606 (642)
+|.+++.+...++|.-..+-..+. . |+ +..+-|.++. .++.=.+|+-...+-+.+.+..-
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777778887444332111 1 11 1222233333 34566888888888888889999
Q ss_pred hHhhHHHHHhccCcchHHHHHHHHHHHHHhhhhh
Q 006516 607 FLLKLRGLLLTIFPQASDKFAVGLLLTGVDFDIC 640 (642)
Q Consensus 607 ~LLK~Rsills~~PqaT~~va~~Ll~~A~vl~v~ 640 (642)
..=|+++++-=..|-+|-.+.+.++++|+++.++
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~v 114 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFV 114 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999888765
No 12
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=37.33 E-value=15 Score=33.80 Aligned_cols=24 Identities=25% Similarity=0.678 Sum_probs=20.7
Q ss_pred cccccchhhccCccchHHHHHHhh
Q 006516 482 AQETVDGVKVDGIDTNLAVMKELL 505 (642)
Q Consensus 482 aqATid~vkveGI~tNvav~kELl 505 (642)
.+...++..++||.||++.++.||
T Consensus 68 l~~aL~e~~i~Gv~TN~~~l~~ll 91 (107)
T smart00878 68 LRRALDEFRIEGVKTNIPFLRALL 91 (107)
T ss_pred HHHHHHhCEEECccCCHHHHHHHh
Confidence 556778889999999999999976
No 13
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=36.91 E-value=35 Score=27.22 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=25.5
Q ss_pred cCCCceEEEeeCCcCcccceeeecccccCcceecccceeeeeeccc
Q 006516 218 SSRGEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRV 263 (642)
Q Consensus 218 L~~~E~IL~idGt~~tqPVl~hig~saWPGRLTLTn~ALYFEa~gv 263 (642)
|.++|.++..-.-.=. +...=+|||.+|++-|||-+...
T Consensus 2 l~~~E~l~~~~~C~l~-------~~~~~~G~lyiT~~~l~F~S~~~ 40 (61)
T smart00568 2 LPEEEKLIADYSCYLS-------RDGPVQGRLYISNYRLCFRSDLP 40 (61)
T ss_pred cCCCcEEEEEEEeEEC-------CCccccEEEEEECCEEEEEccCC
Confidence 4567777765221110 23344899999999999998543
No 14
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=36.82 E-value=42 Score=26.26 Aligned_cols=19 Identities=47% Similarity=1.167 Sum_probs=16.4
Q ss_pred HhhHHHHHHHHHHHHHHHH
Q 006516 539 CRGWLGYALALLLIFFAIF 557 (642)
Q Consensus 539 ~r~wl~Y~~p~~Ll~~a~~ 557 (642)
=|+|+-|.+.++++++++.
T Consensus 13 Er~Wi~F~l~mi~vFi~li 31 (38)
T PF09125_consen 13 ERGWIAFALAMILVFIALI 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 4899999999999888765
No 15
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=36.61 E-value=49 Score=37.13 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHhhhhhhhhcccccchhhccCcc-chHHHHHHhhhhHHHH
Q 006516 463 SPLERTVKESRNSYKKVVQAQETVDGVKVDGID-TNLAVMKELLLPAMEV 511 (642)
Q Consensus 463 s~LE~Av~~s~~~~k~ve~aqATid~vkveGI~-tNvav~kELl~P~~~~ 511 (642)
-.++-+++.|...-.|.| .|+--..+.+||++ .|. +.+|..++++
T Consensus 301 Rdi~E~~Es~qtRisklE-~~~~Qq~~q~e~~~n~~~---r~~l~k~inl 346 (395)
T PF10267_consen 301 RDIWEVMESCQTRISKLE-QQQQQQVVQLEGTENSRA---RALLGKLINL 346 (395)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHhhhhhhhcccccccH---HHHHHHHHHH
Confidence 357789999999999999 66666677789988 222 2445555554
No 16
>COG2510 Predicted membrane protein [Function unknown]
Probab=31.54 E-value=1.3e+02 Score=29.53 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=47.5
Q ss_pred hhhccCccchHHHHHHhhhhHHHHHHHHhhhccccCc----chhhHHHHHHHHHhHhhHHHHH
Q 006516 488 GVKVDGIDTNLAVMKELLLPAMEVGRWLLSLAYWDDP----LKSSVFCLVFTFIICRGWLGYA 546 (642)
Q Consensus 488 ~vkveGI~tNvav~kELl~P~~~~~~~l~~l~~We~P----~kt~~Fl~~~~~iI~r~wl~Y~ 546 (642)
.+-+||+|.|.|-+-.-+-=+.-++-++....+|+-| .|+..|+.++-..---+|+-|.
T Consensus 23 KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf 85 (140)
T COG2510 23 KIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYF 85 (140)
T ss_pred HHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHH
Confidence 4557999999999888887888888899999999998 6778888777766666666664
No 17
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=29.46 E-value=1.6e+02 Score=27.07 Aligned_cols=29 Identities=21% Similarity=0.075 Sum_probs=23.4
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 006516 537 IICRGWLGYALALLLIFFAIFMVLTRFLN 565 (642)
Q Consensus 537 iI~r~wl~Y~~p~~Ll~~a~~Ml~~R~~~ 565 (642)
.+++.|-+++.+++.++.+++++|++...
T Consensus 3 ~~~~~~w~ii~a~~~~~~~~~~~~l~~~~ 31 (106)
T PF10805_consen 3 EFIKKNWGIIWAVFGIAGGIFWLWLRRTY 31 (106)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677778899999999999999887654
No 18
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=28.73 E-value=1.8e+02 Score=29.13 Aligned_cols=36 Identities=17% Similarity=0.419 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhHh-hHHHHHHHHHHHHHHHHHHHhhh
Q 006516 528 SVFCLVFTFIICR-GWLGYALALLLIFFAIFMVLTRF 563 (642)
Q Consensus 528 ~~Fl~~~~~iI~r-~wl~Y~~p~~Ll~~a~~Ml~~R~ 563 (642)
+.|+++..+++.. .|+.|++..+|++.+..|+..+.
T Consensus 46 ~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~~~~~ 82 (183)
T PF03741_consen 46 IIFIFLASWLLSIFPWILLIGGLFLLYIAIKLLHEER 82 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678888888888 99999999999999999999887
No 19
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=28.09 E-value=27 Score=38.48 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=22.7
Q ss_pred hcccccchhhccCccchHHHHHHhhh
Q 006516 481 QAQETVDGVKVDGIDTNLAVMKELLL 506 (642)
Q Consensus 481 ~aqATid~vkveGI~tNvav~kELl~ 506 (642)
.++..++.++++|++||+.+++++|.
T Consensus 402 ~~~~al~~~~i~g~~tn~~~l~~~~~ 427 (449)
T TIGR00514 402 RMKRALSEFIIDGIKTTIPFHQRILE 427 (449)
T ss_pred HHHHHHhhcEEeCccCCHHHHHHHhc
Confidence 36678889999999999999999883
No 20
>PF14470 bPH_3: Bacterial PH domain
Probab=27.69 E-value=83 Score=26.63 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=29.1
Q ss_pred cCCCceEEEeeCCcCcccceeeecccccCcceecccceeeeeecccc
Q 006516 218 SSRGEKILEVDGTVTTQPVLEHVGISTWPGRLTLTDHALYFEAHRVV 264 (642)
Q Consensus 218 L~~~E~IL~idGt~~tqPVl~hig~saWPGRLTLTn~ALYFEa~gv~ 264 (642)
|.+||.|+++--...... ...=||-+.+||+=|+|=..+..
T Consensus 1 L~~~E~I~~~~~~~~~~~------~~~~~g~l~~TnkRlif~~~~~~ 41 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYF------FTSFPGVLVLTNKRLIFYSKGMF 41 (96)
T ss_pred CcCCCEEEEEEEEEEeec------ccCceeEEEEeCCEEEEEEcccC
Confidence 568999998732211111 56678999999999999877644
No 21
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=25.88 E-value=86 Score=29.07 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=44.5
Q ss_pred hhhhhccCCccccccchhhhhhHhhhcCCCCce--eh-hhHHHHHHHHHHHHHHhhhccccccccccccCCCceEEEeeC
Q 006516 153 AFSRIAPAVPIIANVVISENLFEVLTSSTGGRL--QY-SIFNKYITGLERAIKKMKTQSESSILSAIRSSRGEKILEVDG 229 (642)
Q Consensus 153 AF~RIAPavp~vADvit~hnlF~aLT~st~gRL--~f-~~ydkYL~eLdkvik~~k~~~~~~~~~~~~L~~~E~IL~idG 229 (642)
++++|+|=++.|.|+.|+- .|...++-+ ++ |++++ +.+|||..+.+-+..++..+.---..-.|.++.+-|
T Consensus 1 ~~V~I~PE~~Lv~D~~tG~-----V~~~~~dvi~~s~~pi~eq-i~kLe~~addl~nsLdP~~~~l~S~PgREg~~~~AG 74 (97)
T PF05440_consen 1 SYVKIDPEIGLVLDPETGV-----VAEEREDVIVVSMDPINEQ-IDKLEKAADDLVNSLDPRTPPLNSFPGREGTYYIAG 74 (97)
T ss_pred CeEEEcCCcCeeeccccce-----eeeccCCeEEEechHHHHH-HHHHHHHHHHHHhccCCCCCccccCCCCccceeehh
Confidence 5789999999999998863 222222222 33 56777 999999999998865443322222223455555544
No 22
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=24.53 E-value=34 Score=37.31 Aligned_cols=24 Identities=29% Similarity=0.675 Sum_probs=20.5
Q ss_pred cccccchhhccCccchHHHHHHhh
Q 006516 482 AQETVDGVKVDGIDTNLAVMKELL 505 (642)
Q Consensus 482 aqATid~vkveGI~tNvav~kELl 505 (642)
+...++.++++|++||+++++++|
T Consensus 402 ~~~~~~~i~~~g~~~~~~~~~~~~ 425 (450)
T PRK06111 402 LHDALEELKVEGIKTNIPLLLQVL 425 (450)
T ss_pred HHHHHHhCEEeCccCCHHHHHHHh
Confidence 445577888999999999999988
No 23
>COG1803 MgsA Methylglyoxal synthase [Carbohydrate transport and metabolism]
Probab=23.15 E-value=32 Score=33.54 Aligned_cols=75 Identities=21% Similarity=0.353 Sum_probs=53.8
Q ss_pred ccCCCCCCcCccchhhHHHHhcCCCCCCCCCccccCCCCccchhhhhhhccC--CccccccchhhhhhHhhhcCCCCcee
Q 006516 109 QVTGHLADKKFRRLTYDVMLAWEVPAASSQPLLNVDGDATVGMEAFSRIAPA--VPIIANVVISENLFEVLTSSTGGRLQ 186 (642)
Q Consensus 109 ~~~~~L~D~~FrRLtFdmMLAWE~P~~~d~~~~~v~~~~tVG~eAF~RIAPa--vp~vADvit~hnlF~aLT~st~gRL~ 186 (642)
|+..-++++.. |+|.-.-.|-.. +-.++- -.|-.|||-+ ||..-++.|+.+|.+.|-...-.-..
T Consensus 66 QiGa~Iaeg~i-----d~lIFf~DPLta------qPHdpD--VkAL~Rl~~V~nIP~A~N~aTAe~li~~~~~~~~~~~~ 132 (142)
T COG1803 66 QIGALIAEGKI-----DVLIFFWDPLTA------QPHDPD--VKALLRLATVYNIPVATNRATAEFLIKSLLFNDFVEIE 132 (142)
T ss_pred HHHHHHhcCcc-----eEEEEEecCCCC------CCCCcC--HHHHHHHHHhhcccchhhHhHHHHHHhccccCCceeEe
Confidence 34444556654 455545556321 222222 2588999987 89999999999999999998888899
Q ss_pred hhhHHHHHHH
Q 006516 187 YSIFNKYITG 196 (642)
Q Consensus 187 f~~ydkYL~e 196 (642)
++-|+.|+++
T Consensus 133 i~dy~~~~~~ 142 (142)
T COG1803 133 IPDYEEYLAE 142 (142)
T ss_pred ccchhhhccC
Confidence 9999999864
No 24
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=22.03 E-value=3e+02 Score=29.59 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=38.6
Q ss_pred HhhhhHHHHHHHHhhhccccCcchh-hHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 006516 503 ELLLPAMEVGRWLLSLAYWDDPLKS-SVFCLVFTFIICRGWLGYALALLLIFFAIF 557 (642)
Q Consensus 503 ELl~P~~~~~~~l~~l~~We~P~kt-~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~ 557 (642)
-++.|+..+...++....|.++..| ++|+++++..++--.+.+++|.=.++++++
T Consensus 127 ~~~~~~d~~~~~~~~~~~f~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g 182 (359)
T PF06398_consen 127 DLSDPYDFLSSFLYPYLNFSDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSG 182 (359)
T ss_pred HHHHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3455667777778888888877665 677788888888877778887744444443
No 25
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=21.61 E-value=42 Score=37.64 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.8
Q ss_pred cccccchhhccCccchHHHHHHhhh
Q 006516 482 AQETVDGVKVDGIDTNLAVMKELLL 506 (642)
Q Consensus 482 aqATid~vkveGI~tNvav~kELl~ 506 (642)
++...+..+++|++||+.+++++|-
T Consensus 403 ~~~al~~~~i~g~~t~~~~~~~~~~ 427 (478)
T PRK08463 403 LERALKEFVIDGIRTTIPFLIAITK 427 (478)
T ss_pred HHHHHhhcEEeCccCCHHHHHHHhC
Confidence 5567888899999999999999884
No 26
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=21.40 E-value=43 Score=37.47 Aligned_cols=28 Identities=21% Similarity=0.516 Sum_probs=24.0
Q ss_pred hhhcccccchhhccCccchHHHHHHhhh
Q 006516 479 VVQAQETVDGVKVDGIDTNLAVMKELLL 506 (642)
Q Consensus 479 ve~aqATid~vkveGI~tNvav~kELl~ 506 (642)
+..+++..+.++++|++||+..++++|-
T Consensus 399 ~~~~~~al~~~~i~g~~t~~~~~~~~~~ 426 (472)
T PRK07178 399 LDRGRRALDDMRVQGVKTTIPYYQEILR 426 (472)
T ss_pred HHHHHHHHhhcEEeCccCCHHHHHHHhc
Confidence 3447788999999999999999999883
Done!