Query 006516
Match_columns 642
No_of_seqs 67 out of 69
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 18:08:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006516.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2145-2148//hhsearch_pdb/006516hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jn4_A Hypothetical protein FI 1.0 1 1 18.0 3.4 59 254-322 15-77 (87)
2 4dx8_H KREV interaction trappe 1.0 1 1 18.0 1.3 44 82-130 119-165 (203)
3 1lw3_A Myotubularin-related pr 1.0 1 1 16.8 8.3 167 212-400 75-253 (657)
4 1t77_A Lipopolysaccharide-resp 1.0 1 1 16.8 1.2 67 242-316 15-94 (414)
5 3ouz_A Biotin carboxylase; str 1.0 1 1 16.2 0.9 26 481-506 404-429 (446)
6 1t98_A KICB protein, chromosom 1.0 1 1 15.3 -0.9 27 589-618 217-243 (287)
7 1wdi_A Hypothetical protein TT 1.0 1 1 15.3 1.8 24 361-384 166-189 (345)
8 1yy3_A S-adenosylmethionine:tR 1.0 1 1 15.3 0.8 18 518-535 299-316 (346)
9 2wus_R RODZ, putative uncharac 1.0 1 1 15.2 3.4 40 54-93 53-92 (112)
10 3oa6_A MALE-specific lethal 3 1.0 1 1 14.9 2.8 31 207-237 9-39 (110)
No 1
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=1.00 E-value=1 Score=18.00 Aligned_cols=59 Identities=27% Similarity=0.501 Sum_probs=36.8
Q ss_pred CEEEEEECCCCCCCCC--EEEECC-CCCCCCCCC-CCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCH
Q ss_conf 1135443353345763--485524-333530233-44478865244403572127888775898347988852
Q 006516 254 HALYFEAHRVVSYEKA--KIYDLA-EDLKQVVKP-ELTGPWGTRLFDKAVFYKSVSLSEPIILEFPELKGHTR 322 (642)
Q Consensus 254 ~ALYFEa~gv~~y~ka--~r~DLs-~d~~qvvKp-~~tGP~Ga~LFDkAV~ykS~s~sEp~vlEFpel~g~~R 322 (642)
.-|||+.+.|.--... +-.=.+ +|++..|-. +.-+-||-.+ .+.+.|.|+||++-..+|
T Consensus 15 ~~~~~~~MKVMIR~~~~GLs~YVpKKDLEE~VVs~E~~~~WGG~v----------tLaNGw~l~lp~l~~~~~ 77 (87)
T 2jn4_A 15 ENLYFQGMKVMIRKTATGHSAYVAKKDLEELIVEMENPALWGGKV----------TLANGWQLELPAMAADTP 77 (87)
T ss_dssp -------CCEEEEECSSCEEEEETTTTEEEEEEEESSSSSCSSEE----------EETTSCEEECCCCSSSCS
T ss_pred CCEEECCCEEEEEECCCCEEEEEECCCCHHHEEEEECCCCCCCEE----------EECCCCEEEECCCCCCCC
T ss_conf 011614772899957983499976775010201311366667689----------978966897178999998
No 2
>4dx8_H KREV interaction trapped protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens}
Probab=1.00 E-value=1 Score=17.97 Aligned_cols=44 Identities=18% Similarity=0.427 Sum_probs=23.3
Q ss_pred CCCCCCCCHHHHH--HHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 1002796011124--56542336666331-5579888767421255777724
Q 006516 82 SEAIKHPSRYARN--FLEYCCFRTLALST-QVTGHLADKKFRRLTYDVMLAW 130 (642)
Q Consensus 82 ~~s~~~~~~yARn--lvEyCcfraL~~~~-~~~~~L~D~~FrRLtFdmMLAW 130 (642)
|..+|.+..|.-+ ---||||+-+.|+| ..++| |.-+|=-|.+|-
T Consensus 119 P~~vKdntk~~~~pg~PsfyclqdimrVcsE~s~h-----f~~~tsrMl~aL 165 (203)
T 4dx8_H 119 PSVVKDNTKYTYTPGCPIFYCLQDIMRVCSESSTH-----FATLTARMLIAL 165 (203)
T ss_dssp ECCC-----------CCEEEEHHHHHHHC----CC-----BCHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCCCEEEHHHHHHHHHCCCCC-----CCHHHHHHHHHH
T ss_conf 66523788898799997253367788886513555-----323578999999
No 3
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=1.00 E-value=1 Score=16.81 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=79.6
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCEEEEC-CCCCCCCEECCCCEEEEEECCCCCCCCCEEEECC-CCCCCCCCCCCCCC
Q ss_conf 222343589965999617767656066404-5445753000241135443353345763485524-33353023344478
Q 006516 212 ILSAIRSSRGEKILEVDGTVTTQPVLEHVG-ISTWPGRLTLTDHALYFEAHRVVSYEKAKIYDLA-EDLKQVVKPELTGP 289 (642)
Q Consensus 212 ~~~~~~L~~~E~IL~idGt~~tqPVl~hig-~saWPGRLTLTn~ALYFEa~gv~~y~ka~r~DLs-~d~~qvvKp~~tGP 289 (642)
....+.|-.||.|++.. +.|+..-. ...=.|.|.+|||-|+|.... -++...+|+. ..+.++.|- .|+
T Consensus 75 ~~~~~~LLPGE~v~~~~-----~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~---~~~~~~~~IPL~~I~~Iekv--~g~ 144 (657)
T 1lw3_A 75 EMEEPPLLPGENIKDMA-----KDVTYICPFTGAVRGTLTVTNYRLYFKSME---RDPPFVLDASLGVINRVEKI--GGA 144 (657)
T ss_dssp --CCCCCCTTCCEEEEE-----EEEEEEETTTEEEEEEEEEESSEEEEEESS---SSSCEEEEEEGGGEEEEEEE--CCT
T ss_pred CCCCCCCCCCEEEEEEE-----CCEEEECCCCCCEEEEEEEECCEEEEEECC---CCCCEEEEECCCCEEEEEEC--CCC
T ss_conf 68988607884589972-----787994688885668999977889997068---98626998401003899963--787
Q ss_pred CCCCCCC-CEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH-H---HHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8652444-0357212788877589834798885258899999999999-8---875420889601457999977779999
Q 006516 290 WGTRLFD-KAVFYKSVSLSEPIILEFPELKGHTRRDYWLAIIREILYA-H---RFINKFQITGVQRDEVLSKAVLGILRL 364 (642)
Q Consensus 290 ~Ga~LFD-kAV~ykS~s~sEp~vlEFpel~g~~RRD~WLaiI~EVl~v-H---kFIrky~~~~~~k~eals~AilGI~Rl 364 (642)
..+-.+ ..+.+..-+. --+.|.|+. .++.|+|..-+|.+=.--. + -|-=.|++... ..|--.|
T Consensus 145 -s~~g~~~~~l~I~CKDf-R~~~f~f~~-~~~~~~~v~~~L~~~~~P~~~~~~lfAF~y~~~~~---------~~Gw~~y 212 (657)
T 1lw3_A 145 -SSRGENSYGLETVCKDI-RNLRFAHKP-EGRTRRSIFENLMKYAFPVSNNLPLFAFEYKEVFP---------ENGWKLY 212 (657)
T ss_dssp -TCCSTTCSEEEEEETTT-EEEEEECCG-GGCCHHHHHHHHHHHHSSGGGTCCCGGGTCCCCCS---------SCGGGSC
T ss_pred -CCCCCCCCEEEEEECCC-CEEEEEECC-CCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC---------CCCCEEC
T ss_conf -66688774189990488-189999578-64268999999999857776565422422455446---------7885014
Q ss_pred HHHHHHHHCCC-CCCCCC----HHHHCCCCCCCCCCHHHHH
Q ss_conf 99999964079-896420----2311136899965146764
Q 006516 365 QAIQEISTANS-VRCESL----LMFNLCDQLPGGDLILETL 400 (642)
Q Consensus 365 qA~qe~~~~~p-~~p~~l----L~Fsl~~~lP~GD~VLetL 400 (642)
...+|.-|+-- .+.=.+ -.|.+|+..|.=-+|=..+
T Consensus 213 d~~~E~~R~g~~~~~WRis~vN~~y~~C~TYP~~lvVP~~i 253 (657)
T 1lw3_A 213 DPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANI 253 (657)
T ss_dssp CHHHHHHHHTCSCSSEEEECTTTTSCSCTTSCSCEEEETTC
T ss_pred CHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCC
T ss_conf 78899998289966579986448877157888748980768
No 4
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=1.00 E-value=1 Score=16.78 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=37.9
Q ss_pred CCCCCCCEECCCCEEEEEECCCCC-CC------------CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 544575300024113544335334-57------------63485524333530233444788652444035721278887
Q 006516 242 ISTWPGRLTLTDHALYFEAHRVVS-YE------------KAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSLSE 308 (642)
Q Consensus 242 ~saWPGRLTLTn~ALYFEa~gv~~-y~------------ka~r~DLs~d~~qvvKp~~tGP~Ga~LFDkAV~ykS~s~sE 308 (642)
....||+|.+|+..+|||...-.. +. ...++.+ .|+..+.++.- .+=|.|+.+=..+- .
T Consensus 15 ~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~I~~i~~Rry------ll~~~alEif~~~g-~ 86 (414)
T 1t77_A 15 SVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLF-TEIRSIFSRRY------LLQNTALEIFMANR-V 86 (414)
T ss_dssp SCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEG-GGEEEEEEEEE------TTEEEEEEEEETTS-C
T ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCCCCCCHHCCCCCCCEEECC-HHEEEEEEEEC------CCCCEEEEEEECCC-C
T ss_conf 0516369999688899985787633123550021025675317601-35032442300------37663699997489-4
Q ss_pred CEEEECCC
Q ss_conf 75898347
Q 006516 309 PIILEFPE 316 (642)
Q Consensus 309 p~vlEFpe 316 (642)
...|.|++
T Consensus 87 s~~l~F~~ 94 (414)
T 1t77_A 87 AVMFNFPD 94 (414)
T ss_dssp EEEEECSS
T ss_pred EEEEECCC
T ss_conf 79998088
No 5
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=1.00 E-value=1 Score=16.24 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=21.6
Q ss_pred HCCCCCCHHHCCCCCCHHHHHHHHHH
Q ss_conf 10222001010585203999998665
Q 006516 481 QAQETVDGVKVDGIDTNLAVMKELLL 506 (642)
Q Consensus 481 ~aqATid~vkveGI~tNvav~kELl~ 506 (642)
+++...+..+++|+.||++.++.+|-
T Consensus 404 ~~~~al~~~~i~g~~~~~~~~~~~~~ 429 (446)
T 3ouz_A 404 KMKVALDELLISGIKTTKDFHLSMME 429 (446)
T ss_dssp HHHHHHHHCEEESSCCTHHHHHHHHT
T ss_pred HHHHHHHHCEEECCCCCHHHHHHHHC
T ss_conf 99999861889682279999999867
No 6
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=1.00 E-value=1 Score=15.34 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999988744211675688887304
Q 006516 589 AVQNAISQAEQLIQDGNIFLLKLRGLLLTI 618 (642)
Q Consensus 589 alQ~Ais~vE~~iQ~~NI~LLKlRsills~ 618 (642)
.||+-+--.-+.+|+ -||.|..+....
T Consensus 217 ELqDtL~aagd~lqa---~Ll~IQ~~~~~~ 243 (287)
T 1t98_A 217 ELQDTLEAAGDKLQA---NLLRIQDATMTH 243 (287)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHCCC
T ss_conf 999999971789999---999999996587
No 7
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=1.00 E-value=1 Score=15.31 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 999999999964079896420231
Q 006516 361 ILRLQAIQEISTANSVRCESLLMF 384 (642)
Q Consensus 361 I~RlqA~qe~~~~~p~~p~~lL~F 384 (642)
--|||.+=--..=+-.-|+.=|-|
T Consensus 166 ~erYQTVyAk~~GsvAAPTAGLHF 189 (345)
T 1wdi_A 166 MERYQTVYARRPGSVAAPTAGLHF 189 (345)
T ss_dssp ---------------CCCCGGGGC
T ss_pred HHHHHHHHCCCCCHHHCCCCCCCC
T ss_conf 677100406998841157787778
No 8
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=15.27 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=9.7
Q ss_pred HCCCCCCCHHHHHHHHHH
Q ss_conf 103468621367778989
Q 006516 518 LAYWDDPLKSSVFCLVFT 535 (642)
Q Consensus 518 l~~We~P~kt~~Fl~~~~ 535 (642)
++.+--|..|+.+|..+.
T Consensus 299 iTNFHlP~STLlMLVsAf 316 (346)
T 1yy3_A 299 ITNFHLPKSSLIMLVSAL 316 (346)
T ss_dssp EEECCCTTSSHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHH
T ss_conf 106627823999999996
No 9
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=15.15 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 7899999968872899588899962101100279601112
Q 006516 54 LANIVVRRCSKILGISSSELQESFNAEASEAIKHPSRYAR 93 (642)
Q Consensus 54 ~An~vV~rcSrilg~s~~~Lq~~Fe~~~~~s~~~~~~yAR 93 (642)
.....+.+.++.+|+++++|...|+...++...++...+|
T Consensus 53 ~~~~~l~~iA~~Lgv~~~~L~~~~~~~~~~~~~~~~~~~~ 92 (112)
T 2wus_R 53 YIKSYIKRYSEFLELSPDEMLKLYEEGKEEVAEEVEEKKP 92 (112)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 7999999999996969999999887613665666544354
No 10
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=1.00 E-value=1 Score=14.91 Aligned_cols=31 Identities=26% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCE
Q ss_conf 0444322234358996599961776765606
Q 006516 207 QSESSILSAIRSSRGEKILEVDGTVTTQPVL 237 (642)
Q Consensus 207 ~~~~~~~~~~~L~~~E~IL~idGt~~tqPVl 237 (642)
++.++...-.++..||++||.....+.-|||
T Consensus 9 ~M~~~~~~k~~F~~gEkVLc~h~d~~kg~ll 39 (110)
T 3oa6_A 9 HMSASEGMKFKFHSGEKVLCFEPDPTKARVL 39 (110)
T ss_dssp ---------CCSCTTCEEEEECSCTTSCCCE
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 1278877776668999999985488888515
Done!