Query 006516
Match_columns 642
No_of_seqs 67 out of 69
Neff 3.8
Searched_HMMs 13730
Date Tue Mar 26 18:12:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006516.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2145-2148//hhsearch_scop/006516hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t77a2 b.55.1.6 (A:2076-2185) 37.4 5.5 0.0004 16.7 1.1 68 241-316 14-94 (110)
2 d2hthb1 b.55.1.12 (B:3-131) Va 24.3 16 0.0012 13.4 3.0 64 218-292 9-76 (129)
3 d1ulza1 b.84.2.1 (A:329-451) B 22.3 13 0.00098 14.0 1.0 25 482-506 74-98 (123)
4 d2j9ga1 b.84.2.1 (A:331-446) B 18.9 16 0.0012 13.5 0.8 26 481-506 71-96 (116)
5 d1w96a1 b.84.2.1 (A:451-566) A 9.1 36 0.0026 11.1 0.2 25 482-506 73-98 (116)
6 d1wdia_ e.53.1.1 (A:) Queuosin 7.4 46 0.0033 10.3 2.2 24 362-385 166-189 (344)
7 d1vkya_ e.53.1.1 (A:) Queuosin 5.7 60 0.0044 9.5 0.7 32 363-402 155-186 (332)
8 d1xmeb2 f.17.2.1 (B:3-36) Bact 4.1 91 0.0066 8.2 3.0 21 537-557 11-31 (34)
9 d1oeya_ d.15.2.2 (A:) Neutroph 3.9 96 0.007 8.1 0.8 74 165-251 5-78 (82)
10 d1zsqa1 b.55.1.8 (A:74-198) My 3.9 97 0.0071 8.0 3.3 34 218-260 5-43 (125)
No 1
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.38 E-value=5.5 Score=16.71 Aligned_cols=68 Identities=16% Similarity=0.260 Sum_probs=42.4
Q ss_pred CCCCCCCCEECCCCEEEEEECCCC-------------CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 454457530002411354433533-------------4576348552433353023344478865244403572127888
Q 006516 241 GISTWPGRLTLTDHALYFEAHRVV-------------SYEKAKIYDLAEDLKQVVKPELTGPWGTRLFDKAVFYKSVSLS 307 (642)
Q Consensus 241 g~saWPGRLTLTn~ALYFEa~gv~-------------~y~ka~r~DLs~d~~qvvKp~~tGP~Ga~LFDkAV~ykS~s~s 307 (642)
....+||+|.+|+..|||+.-.-. ...+-.++.++ |++.+.++. -.|=|.|+..=..+ .
T Consensus 14 p~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~-~i~~v~~Rr------~ll~~~alEif~~~-~ 85 (110)
T d1t77a2 14 PSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFT-EIRSIFSRR------YLLQNTALEIFMAN-R 85 (110)
T ss_dssp SSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGG-GEEEEEEEE------ETTEEEEEEEEETT-S
T ss_pred ECCEEEEEEEEECCEEEEEECCCCCCHHCCCCCCCCCCCCCCEEEEHH-HHHHHHHHH------HCCCCEEEEEEECC-C
T ss_conf 542587999998268999955788421024432234444412177699-978888465------22776499999739-9
Q ss_pred CCEEEECCC
Q ss_conf 775898347
Q 006516 308 EPIILEFPE 316 (642)
Q Consensus 308 Ep~vlEFpe 316 (642)
...+|.|++
T Consensus 86 ~s~~~~F~~ 94 (110)
T d1t77a2 86 VAVMFNFPD 94 (110)
T ss_dssp CEEEEECSS
T ss_pred CEEEEEECC
T ss_conf 699999599
No 2
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.31 E-value=16 Score=13.43 Aligned_cols=64 Identities=23% Similarity=0.184 Sum_probs=34.0
Q ss_pred CCCCCEEEEEECCCCCCCCEEEECCCCC---CCCEECCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCC-CCCC
Q ss_conf 5899659996177676560664045445---7530002411354433533457634855243335302334447-8865
Q 006516 218 SSRGEKILEVDGTVTTQPVLEHVGISTW---PGRLTLTDHALYFEAHRVVSYEKAKIYDLAEDLKQVVKPELTG-PWGT 292 (642)
Q Consensus 218 L~~~E~IL~idGt~~tqPVl~hig~saW---PGRLTLTn~ALYFEa~gv~~y~ka~r~DLs~d~~qvvKp~~tG-P~Ga 292 (642)
|..||.||.....+.- ..|..-. -|+|.||+|-|.|-.. .+...-++-++..+...+..- .+|+
T Consensus 9 l~~~E~~l~~~~~V~l-----ydG~~k~~~~~G~l~LTthRli~~~~------~~~~~s~~lpl~~i~~~e~~~~~fg~ 76 (129)
T d2hthb1 9 LEINETLVIQQRGVRI-----YDGEEKIKFDAGTLLLSTHRLIWRDQ------KNHECCMAILLSQIVFIEEQAAGIGK 76 (129)
T ss_dssp CCTTCCEEEEEEEEEE-----EETTCSSCCCCEEEEEESSEEEEEET------TCCSCCEEEEGGGEEEEEEECCTTSS
T ss_pred CCCCCEEEEEECCEEE-----ECCCCCCCCCCEEEEEEECEEEEECC------CCCCEEEEEEHHHCEEEEEECCCCCC
T ss_conf 7899679998088785-----63877521133289998245999459------99766899774880233688553268
No 3
>d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]}
Probab=22.34 E-value=13 Score=14.02 Aligned_cols=25 Identities=8% Similarity=0.417 Sum_probs=20.5
Q ss_pred CCCCCCHHHCCCCCCHHHHHHHHHH
Q ss_conf 0222001010585203999998665
Q 006516 482 AQETVDGVKVDGIDTNLAVMKELLL 506 (642)
Q Consensus 482 aqATid~vkveGI~tNvav~kELl~ 506 (642)
.+...++..++||.||+..++.+|.
T Consensus 74 l~~aL~e~~I~Gv~TNi~fl~~il~ 98 (123)
T d1ulza1 74 MRAALETYEITGVKTTIPLLINIMK 98 (123)
T ss_dssp HHHHHHTCEECSSCCSHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHC
T ss_conf 9999987305776736999999967
No 4
>d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]}
Probab=18.94 E-value=16 Score=13.48 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=21.1
Q ss_pred HCCCCCCHHHCCCCCCHHHHHHHHHH
Q ss_conf 10222001010585203999998665
Q 006516 481 QAQETVDGVKVDGIDTNLAVMKELLL 506 (642)
Q Consensus 481 ~aqATid~vkveGI~tNvav~kELl~ 506 (642)
+.+...+...++||+||++.++.+|.
T Consensus 71 ~l~~aL~e~~I~Gv~TN~~~l~~il~ 96 (116)
T d2j9ga1 71 RMKNALQELIIDGIKTNVDLQIRIMN 96 (116)
T ss_dssp HHHHHHHHCEEESSCCSHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHC
T ss_conf 99999874322476716999999968
No 5
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.08 E-value=36 Score=11.08 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=19.7
Q ss_pred CCCCCCHHHCCC-CCCHHHHHHHHHH
Q ss_conf 022200101058-5203999998665
Q 006516 482 AQETVDGVKVDG-IDTNLAVMKELLL 506 (642)
Q Consensus 482 aqATid~vkveG-I~tNvav~kELl~ 506 (642)
.+...++..++| |.||++.++.+|.
T Consensus 73 l~~aL~e~~I~G~v~TN~~fL~~iL~ 98 (116)
T d1w96a1 73 MVVALKELSIRGDFRTTVEYLIKLLE 98 (116)
T ss_dssp HHHHHHHHTTCC----CCHHHHHHHT
T ss_pred HHHHHHHCEEECCCCCCHHHHHHHHC
T ss_conf 99998753673452461999999968
No 6
>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus thermophilus [TaxId: 274]}
Probab=7.37 E-value=46 Score=10.31 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 999999999640798964202311
Q 006516 362 LRLQAIQEISTANSVRCESLLMFN 385 (642)
Q Consensus 362 ~RlqA~qe~~~~~p~~p~~lL~Fs 385 (642)
-|||.+-.-..=+-.-|+.=|-|+
T Consensus 166 ~rYQTVyA~~~GSVAAPTAGLHFt 189 (344)
T d1wdia_ 166 ERYQTVYARRPGSVAAPTAGLHFT 189 (344)
T ss_dssp --------------CCCCGGGGCC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 656656416898751664557789
No 7
>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermotoga maritima [TaxId: 2336]}
Probab=5.68 E-value=60 Score=9.51 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=15.9
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCHHHHHHC
Q ss_conf 9999999964079896420231113689996514676410
Q 006516 363 RLQAIQEISTANSVRCESLLMFNLCDQLPGGDLILETLAN 402 (642)
Q Consensus 363 RlqA~qe~~~~~p~~p~~lL~Fsl~~~lP~GD~VLetLa~ 402 (642)
|||.+=.----+-.-|+.=|-|+ +-+|+.|..
T Consensus 155 rYQTVyA~~~GSVAAPTAGLHFt--------~~ll~~L~~ 186 (332)
T d1vkya_ 155 RYQTVYAKEEGSVAAPTAGLHFT--------PELIEKLKK 186 (332)
T ss_dssp ----------------CGGGGCC--------HHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCC--------HHHHHHHHH
T ss_conf 99988741278603776667678--------999999998
No 8
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=4.06 E-value=91 Score=8.24 Aligned_cols=21 Identities=38% Similarity=0.986 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 957658999999999999999
Q 006516 537 IICRGWLGYALALLLIFFAIF 557 (642)
Q Consensus 537 iI~r~wl~Y~~p~~Ll~~a~~ 557 (642)
.--+||+.+.+++.+++.|..
T Consensus 11 ayekgwlafslamlfvfiali 31 (34)
T d1xmeb2 11 AYEKGWLAFSLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 998608999999999999999
No 9
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.89 E-value=96 Score=8.08 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCC
Q ss_conf 10000123467540279995003418988999999999863104443222343589965999617767656066404544
Q 006516 165 ANVVISENLFEVLTSSTGGRLQYSIFNKYITGLERAIKKMKTQSESSILSAIRSSRGEKILEVDGTVTTQPVLEHVGIST 244 (642)
Q Consensus 165 ADvvt~hnlF~aLT~st~gRL~f~~ydkYL~eLdkvik~~k~~~~~~~~~~~~L~~~E~IL~idGt~~tqPVl~hig~sa 244 (642)
--+++||+.|-+--...-| ++|+.- ++++-++++-+++.-+.|=-.-+.+|.+. + +.-.-|-+=+++.+
T Consensus 5 ~~~vkVh~~fTVal~v~~G-~~y~~L------~~lvs~KL~l~~~~~~LSY~~~~~~e~v~-l-see~me~aWs~v~~-- 73 (82)
T d1oeya_ 5 AYTLKVHYKYTVVMKTQPG-LPYSQV------RDMVSKKLELRLEHTKLSYRPRDSNELVP-L-SEDSMKDAWGQVKN-- 73 (82)
T ss_dssp CEEEEEESSSEEEEEECTT-CCHHHH------HHHHHHHTTCCGGGCCEEECCTTCSSCEE-C-CTTTHHHHHTTCBT--
T ss_pred CEEEEEEEEEEEEEECCCC-CCHHHH------HHHHHHHHCCCHHHEEEEECCCCCCCEEC-C-CHHHHHHHHHHCCC--
T ss_conf 7899999999999980699-987999------99999884798336499851477884542-5-56789999985239--
Q ss_pred CCCCEEC
Q ss_conf 5753000
Q 006516 245 WPGRLTL 251 (642)
Q Consensus 245 WPGRLTL 251 (642)
|+|||
T Consensus 74 --~~LtL 78 (82)
T d1oeya_ 74 --YCLTL 78 (82)
T ss_dssp --TEEEE
T ss_pred --CEEEE
T ss_conf --84899
No 10
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.86 E-value=97 Score=8.05 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=0.0
Q ss_pred CCCCCEEEEEECCCCCCCCEEEE-----CCCCCCCCEECCCCEEEEEE
Q ss_conf 58996599961776765606640-----45445753000241135443
Q 006516 218 SSRGEKILEVDGTVTTQPVLEHV-----GISTWPGRLTLTDHALYFEA 260 (642)
Q Consensus 218 L~~~E~IL~idGt~~tqPVl~hi-----g~saWPGRLTLTn~ALYFEa 260 (642)
|-.||.|.+. .+.+ ..-.=.|.|.||||-|+|..
T Consensus 5 llpGE~i~~~---------~~~V~~~~p~~~~~~G~L~lTnyrliF~~ 43 (125)
T d1zsqa1 5 LLPGENIKDM---------AKDVTYICPFTGAVRGTLTVTNYRLYFKS 43 (125)
T ss_dssp CCTTCCEEEE---------EEEEEEEETTTEEEEEEEEEESSEEEEEE
T ss_pred CCCCCEEEEE---------ECCEEEECCCCCCCCEEEEEEEEEEEEEC
T ss_conf 5898678876---------45679976678860039999842899975
Done!