BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006517
(642 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 30 GSGIPEVKAYLNGI--DAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANL 87
GSG+P++K+ L+G S L LF K G I + G VG EGP VH IA+
Sbjct: 79 GSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQ 138
Query: 88 LGQGGSKKYHLTWRWLR 104
+ G K T R LR
Sbjct: 139 FYRLGVFKELCTDRALR 155
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Query: 320 SKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL-SDLDT 378
+ F + L++ + + L ++ G+ +P+G+F+P L GA +GRL G L+ + +
Sbjct: 313 TDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIV 372
Query: 379 XXXXXXXXXXXXXXTMRMTVSXXXXXXXXXXXXXXXXXXXXXXXXSKTVADSFNQGVYDQ 438
+ +S + V ++FN+ +Y+
Sbjct: 373 PGSYAVVGAAAFTAGVTRALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYET 432
Query: 439 IVKLKGLPYL 448
+V +K LPY+
Sbjct: 433 LVLMKHLPYM 442
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
Length = 466
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 30 GSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLG 89
GSGIP+++ +L G ++ L +K+ G + AG + G EGP + G I + G
Sbjct: 102 GSGIPQIEGHLEG--KLPLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTG 159
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 275 DRCPTVGRSGNYKNFQCPAGHYNDLASLF----LNTNDDAIRNLFSSGTSKEFHLSTLLV 330
DR P + + +K F G + SLF + D+A+ F+S + H STL++
Sbjct: 276 DRLPPL--ATKWKGFLL--GSIIGILSLFPLPLTDGGDNAVLWAFNS----QSHFSTLIL 327
Query: 331 FFVAIYCLGIITYGIAVPSGLFIPVI 356
F + L +I YG G+F P++
Sbjct: 328 VFCGRFLLTLICYGSGAIGGIFAPML 353
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 30 GSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLL 88
GSGIPE++ L + + L VK G + + AG V+G+EGP V G + ++
Sbjct: 106 GSGIPEIEGALE--ELRPVRWWRVLPVKFIGGMGTLGAGMVLGREGPTVQIGGNLGRMV 162
>pdb|2J9L|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2JA3|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
Length = 185
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 572 LHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
L I + SP+TV + + +FR+L LR C+V GR ++GI+T+ D +
Sbjct: 110 LRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQ-CLVTHN-GR--LLGIITKKDVL 160
>pdb|2O16|A Chain A, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
pdb|2O16|B Chain B, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
Length = 160
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 566 MEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 625
M + + + + P+T++ T +L A L L +RH VP ++GI+++ D
Sbjct: 1 MSLMIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRH---VPIVDANKKLLGIVSQRDL 57
Query: 626 M 626
+
Sbjct: 58 L 58
>pdb|2RIF|A Chain A, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Complexed With Amp
pdb|2RIF|B Chain B, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Complexed With Amp
pdb|2RIF|C Chain C, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Complexed With Amp
pdb|2RIF|D Chain D, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Complexed With Amp
pdb|2RIH|A Chain A, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
pdb|2RIH|B Chain B, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Length = 141
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 574 PITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGL 633
PI N SP TV++T + AA R+ +RH+ VV K +VG+L+ D E + L
Sbjct: 75 PIAN-SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKN---GELVGVLSIRDLCFERAILL 130
>pdb|4A7K|A Chain A, Bifunctional Aldos-2-Ulose Dehydratase
pdb|4A7Y|A Chain A, Active Site Metal Depleted Aldos-2-Ulose Dehydratase
pdb|4A7Z|A Chain A, Complex Of Bifunctional Aldos-2-ulose Dehydratase With The
Reaction Intermediate Ascopyrone M
Length = 900
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 44 DAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSK 94
D+ ++LA V+++ + GV+AGF E ACIAN G+GG +
Sbjct: 608 DSAAVLA----HVQLWTAGIGVSAGFHNHVEASFCEIHACIANGTGRGGMR 654
>pdb|2D4Z|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The
Chloride Channel Clc-0
pdb|2D4Z|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The
Chloride Channel Clc-0
Length = 250
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEP 499
N+ D++ + + + G+++H LR T+ FP +D P
Sbjct: 12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,780,406
Number of Sequences: 62578
Number of extensions: 583743
Number of successful extensions: 1063
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 52
length of query: 642
length of database: 14,973,337
effective HSP length: 105
effective length of query: 537
effective length of database: 8,402,647
effective search space: 4512221439
effective search space used: 4512221439
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)