Query 006517
Match_columns 642
No_of_seqs 370 out of 2697
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 00:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474 Cl- channel CLC-7 and 100.0 2E-116 5E-121 910.7 37.3 621 2-641 137-758 (762)
2 KOG0475 Cl- channel CLC-3 and 100.0 8.8E-85 1.9E-89 678.3 30.0 547 2-628 129-693 (696)
3 PRK01862 putative voltage-gate 100.0 1.4E-76 3.1E-81 664.2 50.5 498 4-631 70-572 (574)
4 KOG0476 Cl- channel CLC-2 and 100.0 8.7E-78 1.9E-82 633.7 18.8 480 2-522 139-648 (931)
5 cd03684 ClC_3_like ClC-3-like 100.0 2.1E-69 4.5E-74 584.1 36.8 383 2-448 27-445 (445)
6 cd03685 ClC_6_like ClC-6-like 100.0 6.1E-68 1.3E-72 575.2 36.1 381 3-450 78-461 (466)
7 cd03683 ClC_1_like ClC-1-like 100.0 1.4E-65 3E-70 552.0 34.0 367 3-450 45-426 (426)
8 cd01036 ClC_euk Chloride chann 100.0 7.6E-65 1.6E-69 545.2 32.7 363 2-437 36-416 (416)
9 PRK01610 putative voltage-gate 100.0 4.3E-59 9.3E-64 499.3 38.5 360 5-443 52-417 (418)
10 PF00654 Voltage_CLC: Voltage 100.0 1E-59 2.2E-64 497.1 29.7 347 12-430 1-355 (355)
11 cd01031 EriC ClC chloride chan 100.0 1.6E-58 3.5E-63 496.3 36.9 361 4-441 38-402 (402)
12 cd01034 EriC_like ClC chloride 100.0 1.7E-58 3.7E-63 493.3 35.4 359 3-437 27-390 (390)
13 COG0038 EriC Chloride channel 100.0 8E-58 1.7E-62 491.8 38.7 367 4-448 64-436 (443)
14 PRK05277 chloride channel prot 100.0 1E-57 2.2E-62 494.7 38.8 364 6-443 47-417 (438)
15 cd01033 ClC_like Putative ClC 100.0 9.4E-57 2E-61 478.3 35.8 345 4-431 40-386 (388)
16 cd00400 Voltage_gated_ClC CLC 100.0 6E-52 1.3E-56 443.7 35.5 344 3-425 37-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 1.4E-49 2.9E-54 422.7 35.8 341 8-437 36-378 (378)
18 PRK03655 putative ion channel 100.0 2.5E-47 5.5E-52 406.0 34.9 336 4-428 57-397 (414)
19 COG3448 CBS-domain-containing 99.7 2.2E-16 4.7E-21 152.4 15.6 137 456-636 242-378 (382)
20 COG2524 Predicted transcriptio 99.7 7.7E-17 1.7E-21 153.0 11.5 123 455-629 168-290 (294)
21 PRK11543 gutQ D-arabinose 5-ph 99.6 1.3E-15 2.9E-20 159.5 13.4 147 432-628 164-318 (321)
22 PRK10892 D-arabinose 5-phospha 99.6 1.7E-15 3.8E-20 158.9 14.0 147 432-628 169-323 (326)
23 PRK01862 putative voltage-gate 99.6 1.9E-14 4.2E-19 162.1 16.2 185 201-431 24-219 (574)
24 COG3620 Predicted transcriptio 99.6 1.7E-14 3.7E-19 127.1 11.0 122 457-630 63-184 (187)
25 cd00400 Voltage_gated_ClC CLC 99.5 6.8E-14 1.5E-18 150.0 15.2 176 209-431 1-186 (383)
26 COG4109 Predicted transcriptio 99.5 2.5E-14 5.3E-19 141.6 7.8 148 415-631 158-307 (432)
27 PRK07807 inosine 5-monophospha 99.5 6.5E-14 1.4E-18 151.7 11.8 145 433-632 58-207 (479)
28 cd04641 CBS_pair_28 The CBS do 99.5 2.1E-13 4.6E-18 121.0 12.8 119 467-627 1-119 (120)
29 cd01034 EriC_like ClC chloride 99.5 2.6E-13 5.7E-18 145.5 14.6 135 11-166 247-381 (390)
30 cd01031 EriC ClC chloride chan 99.5 2.1E-13 4.6E-18 147.0 13.8 177 208-431 1-187 (402)
31 cd01033 ClC_like Putative ClC 99.5 1.4E-13 3E-18 147.1 12.2 143 10-167 243-385 (388)
32 cd04619 CBS_pair_6 The CBS dom 99.5 2.9E-13 6.2E-18 119.1 12.1 112 468-627 2-113 (114)
33 PRK05277 chloride channel prot 99.5 6.7E-13 1.4E-17 144.5 17.0 183 203-431 2-197 (438)
34 cd04603 CBS_pair_KefB_assoc Th 99.5 4E-13 8.7E-18 117.6 12.0 109 468-627 2-110 (111)
35 cd04618 CBS_pair_5 The CBS dom 99.5 6E-13 1.3E-17 113.8 11.3 95 468-627 2-97 (98)
36 TIGR03520 GldE gliding motilit 99.4 6E-13 1.3E-17 142.9 13.3 128 456-636 188-317 (408)
37 cd04617 CBS_pair_4 The CBS dom 99.4 1.1E-12 2.3E-17 116.2 12.5 114 468-627 2-117 (118)
38 PRK15094 magnesium/cobalt effl 99.4 8.1E-13 1.8E-17 135.3 12.7 130 456-636 64-195 (292)
39 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.3E-12 2.8E-17 115.0 12.0 113 468-627 2-114 (115)
40 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.4E-12 3.1E-17 116.2 12.0 122 467-627 2-123 (124)
41 cd04605 CBS_pair_MET2_assoc Th 99.4 2.4E-12 5.1E-17 112.2 12.4 108 467-627 2-109 (110)
42 PRK07107 inosine 5-monophospha 99.4 8.6E-13 1.9E-17 143.9 11.2 145 434-628 66-218 (502)
43 cd04639 CBS_pair_26 The CBS do 99.4 2.5E-12 5.4E-17 112.2 11.8 109 468-627 2-110 (111)
44 cd04608 CBS_pair_PALP_assoc Th 99.4 1.1E-12 2.3E-17 117.5 9.2 113 467-628 2-123 (124)
45 cd04607 CBS_pair_NTP_transfera 99.4 3.2E-12 6.9E-17 112.1 12.0 110 468-627 3-112 (113)
46 cd04596 CBS_pair_DRTGG_assoc T 99.4 2E-12 4.3E-17 112.5 10.6 105 468-627 3-107 (108)
47 cd04624 CBS_pair_11 The CBS do 99.4 3.7E-12 8E-17 111.3 12.1 110 468-627 2-111 (112)
48 cd04614 CBS_pair_1 The CBS dom 99.4 3.7E-12 7.9E-17 108.5 11.4 94 468-627 2-95 (96)
49 TIGR01137 cysta_beta cystathio 99.4 2.2E-12 4.8E-17 141.8 12.6 149 429-629 304-453 (454)
50 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 4.9E-12 1.1E-16 109.8 12.2 107 467-627 2-108 (109)
51 cd04623 CBS_pair_10 The CBS do 99.4 4.8E-12 1E-16 110.6 11.9 111 468-627 2-112 (113)
52 cd04801 CBS_pair_M50_like This 99.4 4.7E-12 1E-16 111.2 11.8 109 468-627 2-113 (114)
53 cd04615 CBS_pair_2 The CBS dom 99.4 4.5E-12 9.7E-17 111.0 11.5 111 468-627 2-112 (113)
54 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 5E-12 1.1E-16 109.3 11.6 104 468-627 2-105 (106)
55 cd04630 CBS_pair_17 The CBS do 99.4 5.7E-12 1.2E-16 110.7 12.1 112 468-627 2-113 (114)
56 cd04803 CBS_pair_15 The CBS do 99.4 5.1E-12 1.1E-16 112.3 11.8 120 468-627 2-121 (122)
57 cd04629 CBS_pair_16 The CBS do 99.4 4.2E-12 9E-17 111.3 10.5 112 468-627 2-113 (114)
58 TIGR00400 mgtE Mg2+ transporte 99.4 1.7E-12 3.6E-17 141.5 9.7 126 456-636 128-258 (449)
59 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 6.3E-12 1.4E-16 110.0 11.6 112 468-627 2-113 (114)
60 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 2.9E-12 6.3E-17 138.8 11.3 122 455-632 84-205 (475)
61 cd04620 CBS_pair_7 The CBS dom 99.4 8E-12 1.7E-16 109.8 12.0 110 468-627 2-114 (115)
62 cd04586 CBS_pair_BON_assoc Thi 99.3 4.7E-12 1E-16 115.0 10.6 133 467-627 2-134 (135)
63 cd04636 CBS_pair_23 The CBS do 99.3 7.8E-12 1.7E-16 113.0 11.6 130 468-627 2-131 (132)
64 cd04642 CBS_pair_29 The CBS do 99.3 1E-11 2.3E-16 111.2 12.2 124 468-627 2-125 (126)
65 cd04626 CBS_pair_13 The CBS do 99.3 8.4E-12 1.8E-16 108.9 11.3 109 468-627 2-110 (111)
66 cd04588 CBS_pair_CAP-ED_DUF294 99.3 1.3E-11 2.8E-16 107.5 12.5 109 467-627 1-109 (110)
67 cd04627 CBS_pair_14 The CBS do 99.3 1.2E-11 2.7E-16 110.1 12.3 120 468-626 2-121 (123)
68 cd04635 CBS_pair_22 The CBS do 99.3 7.8E-12 1.7E-16 111.1 10.9 120 468-627 2-121 (122)
69 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 9.3E-12 2E-16 109.0 11.2 111 468-627 3-113 (114)
70 cd04595 CBS_pair_DHH_polyA_Pol 99.3 1.4E-11 3E-16 107.3 12.1 108 467-627 2-109 (110)
71 cd04631 CBS_pair_18 The CBS do 99.3 1.2E-11 2.6E-16 110.4 11.8 124 467-627 1-124 (125)
72 cd04643 CBS_pair_30 The CBS do 99.3 9.9E-12 2.2E-16 109.3 11.1 114 468-627 2-115 (116)
73 PTZ00314 inosine-5'-monophosph 99.3 6.9E-12 1.5E-16 137.1 11.9 118 460-628 97-216 (495)
74 cd04621 CBS_pair_8 The CBS dom 99.3 1.4E-11 2.9E-16 112.1 11.7 133 468-627 2-134 (135)
75 cd04602 CBS_pair_IMPDH_2 This 99.3 1.4E-11 3E-16 108.3 11.3 109 468-627 3-113 (114)
76 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 2.1E-11 4.5E-16 106.2 12.2 109 468-627 2-110 (111)
77 cd04800 CBS_pair_CAP-ED_DUF294 99.3 1.9E-11 4.2E-16 106.5 12.0 109 468-627 2-110 (111)
78 cd04632 CBS_pair_19 The CBS do 99.3 1.8E-11 3.9E-16 109.9 12.0 126 468-627 2-127 (128)
79 cd04591 CBS_pair_EriC_assoc_eu 99.3 2.3E-11 5E-16 105.3 12.2 100 467-627 2-104 (105)
80 cd04601 CBS_pair_IMPDH This cd 99.3 1.1E-11 2.4E-16 107.7 10.2 107 467-627 2-109 (110)
81 PRK14869 putative manganese-de 99.3 4.1E-12 8.9E-17 142.6 9.3 164 459-630 68-304 (546)
82 cd04622 CBS_pair_9 The CBS dom 99.3 2.9E-11 6.3E-16 105.7 12.6 110 468-627 2-112 (113)
83 cd04587 CBS_pair_CAP-ED_DUF294 99.3 2.4E-11 5.1E-16 106.3 12.0 111 468-627 2-112 (113)
84 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 2.8E-11 6E-16 105.4 12.0 110 467-627 1-110 (111)
85 cd04589 CBS_pair_CAP-ED_DUF294 99.3 2.9E-11 6.2E-16 105.5 12.1 109 468-627 2-110 (111)
86 TIGR01302 IMP_dehydrog inosine 99.3 1.6E-11 3.6E-16 133.5 12.7 121 458-629 79-200 (450)
87 PRK01610 putative voltage-gate 99.3 6.4E-11 1.4E-15 127.7 17.1 185 200-431 3-200 (418)
88 PLN02274 inosine-5'-monophosph 99.3 1.6E-11 3.5E-16 134.3 12.6 117 464-631 105-223 (505)
89 cd04585 CBS_pair_ACT_assoc2 Th 99.3 3E-11 6.4E-16 107.0 12.0 120 468-627 2-121 (122)
90 cd04625 CBS_pair_12 The CBS do 99.3 3.2E-11 6.8E-16 105.4 11.9 110 468-627 2-111 (112)
91 cd04599 CBS_pair_GGDEF_assoc2 99.3 2.2E-11 4.7E-16 105.0 10.7 103 468-627 2-104 (105)
92 cd04640 CBS_pair_27 The CBS do 99.3 1.9E-11 4.2E-16 109.5 10.6 117 468-627 2-125 (126)
93 cd04590 CBS_pair_CorC_HlyC_ass 99.3 3.6E-11 7.8E-16 104.8 12.0 109 468-627 2-110 (111)
94 TIGR00393 kpsF KpsF/GutQ famil 99.3 1.3E-11 2.9E-16 125.9 10.6 114 458-621 154-268 (268)
95 cd03682 ClC_sycA_like ClC sycA 99.3 6.3E-11 1.4E-15 126.5 16.2 98 333-431 79-180 (378)
96 cd04802 CBS_pair_3 The CBS dom 99.3 4.4E-11 9.5E-16 104.5 12.4 110 468-627 2-111 (112)
97 cd04637 CBS_pair_24 The CBS do 99.3 2.8E-11 6.1E-16 107.5 11.3 120 468-627 2-121 (122)
98 PRK05567 inosine 5'-monophosph 99.3 2.2E-11 4.7E-16 134.0 12.4 117 459-629 87-204 (486)
99 cd04610 CBS_pair_ParBc_assoc T 99.3 3.1E-11 6.8E-16 104.4 10.9 105 467-627 2-106 (107)
100 COG0517 FOG: CBS domain [Gener 99.3 6E-11 1.3E-15 104.3 12.8 114 462-626 2-117 (117)
101 cd04609 CBS_pair_PALP_assoc2 T 99.3 4.9E-11 1.1E-15 103.6 11.2 109 468-628 2-110 (110)
102 cd04606 CBS_pair_Mg_transporte 99.2 2.5E-11 5.3E-16 105.7 9.1 102 472-628 2-108 (109)
103 cd04594 CBS_pair_EriC_assoc_ar 99.2 6.3E-11 1.4E-15 102.3 11.4 100 470-627 4-103 (104)
104 cd02205 CBS_pair The CBS domai 99.2 9E-11 1.9E-15 101.7 12.0 111 468-627 2-112 (113)
105 COG2905 Predicted signal-trans 99.2 1.9E-11 4.2E-16 128.9 9.0 125 456-630 146-270 (610)
106 PRK11573 hypothetical protein; 99.2 6.5E-11 1.4E-15 127.2 13.2 132 456-636 184-317 (413)
107 cd04633 CBS_pair_20 The CBS do 99.2 7.4E-11 1.6E-15 104.6 10.8 119 468-627 2-120 (121)
108 cd03685 ClC_6_like ClC-6-like 99.2 1.3E-10 2.9E-15 127.0 14.8 186 199-429 30-241 (466)
109 cd04584 CBS_pair_ACT_assoc Thi 99.2 1.2E-10 2.6E-15 103.1 11.1 119 468-627 2-120 (121)
110 cd04638 CBS_pair_25 The CBS do 99.2 2E-10 4.4E-15 99.3 10.9 104 468-627 2-105 (106)
111 cd04598 CBS_pair_GGDEF_assoc T 99.2 2.4E-10 5.2E-15 101.0 10.8 113 468-627 2-118 (119)
112 cd04634 CBS_pair_21 The CBS do 99.2 3E-10 6.4E-15 104.3 11.7 142 467-627 1-142 (143)
113 COG1253 TlyC Hemolysins and re 99.1 5E-10 1.1E-14 121.5 13.7 132 455-637 202-335 (429)
114 COG2239 MgtE Mg/Co/Ni transpor 99.1 1.8E-10 3.9E-15 122.9 8.2 125 458-637 131-260 (451)
115 COG4536 CorB Putative Mg2+ and 99.1 4.5E-10 9.8E-15 113.1 9.6 131 455-634 196-328 (423)
116 cd01036 ClC_euk Chloride chann 99.0 1.4E-09 3E-14 117.6 12.7 100 332-431 88-202 (416)
117 cd04592 CBS_pair_EriC_assoc_eu 99.0 1.4E-09 3E-14 98.5 10.6 116 468-609 2-117 (133)
118 PRK03655 putative ion channel 99.0 9.6E-09 2.1E-13 110.3 18.7 179 200-431 11-203 (414)
119 cd03683 ClC_1_like ClC-1-like 99.0 1.8E-09 4E-14 116.9 13.0 184 202-430 2-202 (426)
120 cd03684 ClC_3_like ClC-3-like 99.0 4.9E-09 1.1E-13 114.2 14.3 176 209-431 1-183 (445)
121 COG0038 EriC Chloride channel 99.0 1.8E-08 3.8E-13 109.5 17.6 98 333-431 114-215 (443)
122 PF00571 CBS: CBS domain CBS d 98.8 6.1E-09 1.3E-13 79.2 5.4 55 573-630 2-56 (57)
123 PF00571 CBS: CBS domain CBS d 98.8 9.6E-09 2.1E-13 78.1 6.3 56 461-521 1-56 (57)
124 KOG2550 IMP dehydrogenase/GMP 98.8 1.7E-08 3.6E-13 102.5 8.2 119 468-640 117-235 (503)
125 COG4535 CorC Putative Mg2+ and 98.7 2.2E-08 4.7E-13 94.7 7.1 129 456-635 64-194 (293)
126 KOG1764 5'-AMP-activated prote 98.6 2.5E-07 5.4E-12 98.0 11.5 126 468-634 238-363 (381)
127 PF00654 Voltage_CLC: Voltage 98.6 5.3E-07 1.1E-11 95.7 12.8 144 7-166 203-354 (355)
128 TIGR01186 proV glycine betaine 98.5 6.8E-07 1.5E-11 94.5 12.3 114 465-633 248-361 (363)
129 PRK10070 glycine betaine trans 98.5 9.8E-07 2.1E-11 94.4 11.8 119 459-632 274-395 (400)
130 COG3448 CBS-domain-containing 98.2 3.7E-07 8E-12 89.2 1.9 148 413-627 152-299 (382)
131 TIGR00400 mgtE Mg2+ transporte 98.2 4.3E-07 9.3E-12 99.3 1.8 112 459-630 195-306 (449)
132 cd04597 CBS_pair_DRTGG_assoc2 98.2 2.5E-06 5.4E-11 74.8 5.8 54 459-517 58-111 (113)
133 PRK14869 putative manganese-de 98.2 8.4E-07 1.8E-11 99.9 3.3 161 440-628 221-391 (546)
134 COG2524 Predicted transcriptio 98.0 9.2E-06 2E-10 78.3 5.6 60 457-521 232-291 (294)
135 cd04603 CBS_pair_KefB_assoc Th 97.9 1.4E-05 3E-10 69.6 5.6 55 459-518 56-110 (111)
136 cd04597 CBS_pair_DRTGG_assoc2 97.9 1.4E-05 3.1E-10 69.9 5.1 55 570-627 58-112 (113)
137 COG3620 Predicted transcriptio 97.9 1E-05 2.2E-10 72.3 3.7 61 569-633 64-124 (187)
138 cd04619 CBS_pair_6 The CBS dom 97.8 2.9E-05 6.3E-10 67.8 5.5 56 458-518 58-113 (114)
139 cd04600 CBS_pair_HPP_assoc Thi 97.6 7.7E-05 1.7E-09 65.9 5.2 57 457-518 67-123 (124)
140 PRK05567 inosine 5'-monophosph 97.6 0.00017 3.8E-09 79.7 8.2 57 459-520 147-204 (486)
141 cd04607 CBS_pair_NTP_transfera 97.6 0.00012 2.6E-09 63.6 5.6 54 459-517 58-111 (113)
142 cd04620 CBS_pair_7 The CBS dom 97.6 0.00012 2.6E-09 63.8 5.5 56 458-518 57-114 (115)
143 cd04625 CBS_pair_12 The CBS do 97.6 0.00014 3E-09 63.0 5.8 55 458-518 57-111 (112)
144 cd04627 CBS_pair_14 The CBS do 97.5 0.00015 3.2E-09 64.2 5.9 52 461-517 70-121 (123)
145 cd04606 CBS_pair_Mg_transporte 97.5 0.00014 3E-09 62.8 5.5 57 458-519 52-108 (109)
146 cd04585 CBS_pair_ACT_assoc2 Th 97.5 0.00016 3.4E-09 63.5 5.9 57 457-518 65-121 (122)
147 cd04596 CBS_pair_DRTGG_assoc T 97.5 0.00015 3.3E-09 62.4 5.5 56 458-518 52-107 (108)
148 cd04617 CBS_pair_4 The CBS dom 97.5 0.00014 3E-09 63.9 5.2 60 457-518 56-117 (118)
149 cd04615 CBS_pair_2 The CBS dom 97.5 0.00017 3.8E-09 62.5 5.8 56 457-517 56-111 (113)
150 cd04630 CBS_pair_17 The CBS do 97.5 0.00015 3.3E-09 63.1 5.3 55 458-518 59-113 (114)
151 cd04618 CBS_pair_5 The CBS dom 97.5 0.00017 3.7E-09 61.3 5.2 46 580-628 3-49 (98)
152 cd04641 CBS_pair_28 The CBS do 97.5 0.00021 4.6E-09 62.9 5.9 49 579-630 2-50 (120)
153 cd04610 CBS_pair_ParBc_assoc T 97.4 0.00023 4.9E-09 61.0 5.6 55 459-518 52-106 (107)
154 cd04635 CBS_pair_22 The CBS do 97.4 0.00018 3.9E-09 63.4 5.0 57 457-518 65-121 (122)
155 cd04621 CBS_pair_8 The CBS dom 97.4 0.00026 5.7E-09 64.0 6.2 56 457-518 79-134 (135)
156 cd04604 CBS_pair_KpsF_GutQ_ass 97.4 0.00023 5E-09 61.7 5.6 55 459-518 59-113 (114)
157 cd04587 CBS_pair_CAP-ED_DUF294 97.4 0.00017 3.7E-09 62.5 4.8 54 459-517 58-111 (113)
158 cd04639 CBS_pair_26 The CBS do 97.4 0.00021 4.5E-09 61.7 5.2 55 459-518 56-110 (111)
159 cd04803 CBS_pair_15 The CBS do 97.4 0.00026 5.6E-09 62.3 5.8 57 457-518 65-121 (122)
160 COG4109 Predicted transcriptio 97.4 0.00026 5.5E-09 71.5 6.2 62 456-522 246-307 (432)
161 cd04602 CBS_pair_IMPDH_2 This 97.4 0.00027 5.9E-09 61.5 5.8 55 459-518 57-113 (114)
162 smart00116 CBS Domain in cysta 97.4 0.00027 5.8E-09 50.4 4.8 46 580-628 2-47 (49)
163 cd04611 CBS_pair_PAS_GGDEF_DUF 97.4 0.00027 5.8E-09 61.0 5.6 57 457-518 54-110 (111)
164 PRK10892 D-arabinose 5-phospha 97.4 0.00023 5E-09 74.8 6.2 56 457-518 267-322 (326)
165 cd04614 CBS_pair_1 The CBS dom 97.4 0.00031 6.8E-09 59.3 5.8 46 579-627 2-47 (96)
166 cd04592 CBS_pair_EriC_assoc_eu 97.4 0.00033 7.1E-09 63.3 6.1 50 579-631 2-51 (133)
167 cd04583 CBS_pair_ABC_OpuCA_ass 97.4 0.0003 6.6E-09 60.4 5.7 54 459-517 54-107 (109)
168 TIGR01303 IMP_DH_rel_1 IMP deh 97.4 0.0008 1.7E-08 73.6 10.2 59 459-522 146-204 (475)
169 cd04802 CBS_pair_3 The CBS dom 97.4 0.00031 6.8E-09 60.7 5.7 55 457-517 56-110 (112)
170 smart00116 CBS Domain in cysta 97.4 0.00052 1.1E-08 48.8 6.0 47 469-520 2-48 (49)
171 cd04613 CBS_pair_SpoIVFB_EriC_ 97.4 0.0003 6.4E-09 60.9 5.5 56 458-518 57-113 (114)
172 cd04582 CBS_pair_ABC_OpuCA_ass 97.4 0.00036 7.8E-09 59.7 5.9 54 460-518 52-105 (106)
173 cd04595 CBS_pair_DHH_polyA_Pol 97.4 0.00036 7.7E-09 60.2 5.8 55 457-517 54-108 (110)
174 cd04586 CBS_pair_BON_assoc Thi 97.4 0.00025 5.4E-09 63.9 4.9 55 458-518 80-134 (135)
175 cd04622 CBS_pair_9 The CBS dom 97.3 0.00027 5.8E-09 61.2 4.9 55 459-518 58-112 (113)
176 PRK07107 inosine 5-monophospha 97.3 0.00031 6.6E-09 77.4 6.4 59 457-520 159-219 (502)
177 KOG1764 5'-AMP-activated prote 97.3 0.00098 2.1E-08 70.9 10.0 131 468-637 163-293 (381)
178 cd04631 CBS_pair_18 The CBS do 97.3 0.00033 7.2E-09 61.9 5.5 56 458-518 69-124 (125)
179 cd04623 CBS_pair_10 The CBS do 97.3 0.00042 9.2E-09 59.8 6.0 55 458-518 58-112 (113)
180 cd04601 CBS_pair_IMPDH This cd 97.3 0.00036 7.9E-09 60.0 5.4 56 458-518 53-109 (110)
181 cd04589 CBS_pair_CAP-ED_DUF294 97.3 0.00041 9E-09 59.9 5.7 55 458-518 56-110 (111)
182 cd04629 CBS_pair_16 The CBS do 97.3 0.00034 7.4E-09 60.7 5.2 55 458-518 59-113 (114)
183 cd04593 CBS_pair_EriC_assoc_ba 97.3 0.00039 8.4E-09 60.6 5.5 57 459-518 58-114 (115)
184 PRK11543 gutQ D-arabinose 5-ph 97.3 0.00037 8E-09 73.1 6.2 55 459-518 263-317 (321)
185 cd04633 CBS_pair_20 The CBS do 97.3 0.00037 8.1E-09 61.2 5.3 56 457-518 65-120 (121)
186 cd04608 CBS_pair_PALP_assoc Th 97.3 0.00062 1.4E-08 60.5 6.8 51 579-632 3-53 (124)
187 cd04643 CBS_pair_30 The CBS do 97.3 0.00033 7.1E-09 61.0 4.9 54 458-518 62-115 (116)
188 PRK07807 inosine 5-monophospha 97.3 0.00042 9E-09 75.9 6.6 59 459-522 148-206 (479)
189 cd04588 CBS_pair_CAP-ED_DUF294 97.3 0.00043 9.3E-09 59.7 5.4 54 459-517 55-108 (110)
190 cd04612 CBS_pair_SpoIVFB_EriC_ 97.3 0.00049 1.1E-08 59.3 5.8 55 459-518 56-110 (111)
191 cd04800 CBS_pair_CAP-ED_DUF294 97.3 0.00046 1E-08 59.5 5.7 55 458-518 56-110 (111)
192 cd04636 CBS_pair_23 The CBS do 97.3 0.00048 1E-08 61.8 5.8 56 457-518 76-131 (132)
193 cd04801 CBS_pair_M50_like This 97.3 0.00031 6.7E-09 61.1 4.4 55 458-517 56-112 (114)
194 cd04605 CBS_pair_MET2_assoc Th 97.3 0.00054 1.2E-08 59.0 5.8 54 460-518 56-109 (110)
195 cd04594 CBS_pair_EriC_assoc_ar 97.3 0.00043 9.2E-09 59.2 5.1 53 460-518 51-103 (104)
196 cd04599 CBS_pair_GGDEF_assoc2 97.2 0.00054 1.2E-08 58.4 5.6 53 459-517 51-103 (105)
197 PLN02274 inosine-5'-monophosph 97.2 0.00054 1.2E-08 75.6 6.8 60 458-522 162-223 (505)
198 cd04626 CBS_pair_13 The CBS do 97.2 0.00054 1.2E-08 59.2 5.5 53 459-517 57-109 (111)
199 COG0517 FOG: CBS domain [Gener 97.2 0.00059 1.3E-08 59.4 5.8 52 460-516 63-116 (117)
200 cd04642 CBS_pair_29 The CBS do 97.2 0.00062 1.3E-08 60.5 5.9 52 462-518 74-125 (126)
201 cd04624 CBS_pair_11 The CBS do 97.2 0.00065 1.4E-08 58.7 5.5 54 459-517 57-110 (112)
202 cd04637 CBS_pair_24 The CBS do 97.2 0.00064 1.4E-08 59.8 5.4 55 459-518 67-121 (122)
203 cd04591 CBS_pair_EriC_assoc_eu 97.2 0.00067 1.5E-08 58.3 5.3 49 464-518 56-104 (105)
204 cd04584 CBS_pair_ACT_assoc Thi 97.1 0.00075 1.6E-08 59.2 5.6 56 457-518 65-120 (121)
205 cd04632 CBS_pair_19 The CBS do 97.0 0.00089 1.9E-08 59.5 5.2 58 458-518 70-127 (128)
206 TIGR01137 cysta_beta cystathio 96.9 0.0011 2.5E-08 72.9 6.0 60 569-631 334-393 (454)
207 cd04598 CBS_pair_GGDEF_assoc T 96.9 0.0018 3.8E-08 56.6 5.9 56 457-517 59-117 (119)
208 TIGR00393 kpsF KpsF/GutQ famil 96.9 0.0013 2.7E-08 67.1 5.5 58 569-629 154-212 (268)
209 cd02205 CBS_pair The CBS domai 96.9 0.0026 5.7E-08 54.2 6.4 52 579-633 2-53 (113)
210 cd04590 CBS_pair_CorC_HlyC_ass 96.9 0.0021 4.6E-08 55.4 5.8 50 579-631 2-52 (111)
211 PTZ00314 inosine-5'-monophosph 96.9 0.0013 2.8E-08 72.6 5.3 59 458-521 158-218 (495)
212 KOG0474 Cl- channel CLC-7 and 96.8 0.0024 5.3E-08 69.2 7.0 97 333-429 190-301 (762)
213 cd04640 CBS_pair_27 The CBS do 96.8 0.0023 5E-08 56.8 5.8 46 579-627 2-47 (126)
214 cd04609 CBS_pair_PALP_assoc2 T 96.8 0.0022 4.9E-08 54.9 5.3 53 459-518 57-109 (110)
215 cd04638 CBS_pair_25 The CBS do 96.8 0.0025 5.4E-08 54.5 5.5 53 460-518 53-105 (106)
216 cd04634 CBS_pair_21 The CBS do 96.7 0.0027 5.9E-08 57.8 5.8 54 458-517 88-141 (143)
217 COG2905 Predicted signal-trans 96.7 0.0017 3.8E-08 69.7 4.9 63 571-636 150-212 (610)
218 TIGR01302 IMP_dehydrog inosine 96.7 0.0027 5.9E-08 69.5 6.4 56 569-627 79-137 (450)
219 COG2239 MgtE Mg/Co/Ni transpor 96.6 0.0021 4.6E-08 69.3 4.9 61 457-522 194-254 (451)
220 PRK15094 magnesium/cobalt effl 96.6 0.0029 6.4E-08 65.1 5.4 57 460-522 134-190 (292)
221 TIGR03520 GldE gliding motilit 96.5 0.0035 7.5E-08 67.8 5.6 58 570-629 191-250 (408)
222 TIGR03415 ABC_choXWV_ATP choli 96.5 0.0064 1.4E-07 64.9 7.4 49 577-630 332-380 (382)
223 COG4175 ProV ABC-type proline/ 96.4 0.0045 9.7E-08 62.4 5.2 112 456-631 271-384 (386)
224 TIGR01186 proV glycine betaine 96.0 0.012 2.6E-07 62.4 6.3 57 460-522 303-359 (363)
225 PRK10070 glycine betaine trans 95.0 0.05 1.1E-06 58.5 6.6 57 460-522 338-394 (400)
226 KOG2550 IMP dehydrogenase/GMP 94.9 0.03 6.4E-07 58.1 4.3 57 458-519 170-226 (503)
227 KOG0476 Cl- channel CLC-2 and 94.7 0.3 6.5E-06 54.7 11.5 67 568-635 586-652 (931)
228 PRK11573 hypothetical protein; 93.9 0.11 2.3E-06 56.4 6.2 58 570-629 187-246 (413)
229 KOG0475 Cl- channel CLC-3 and 92.7 0.19 4.2E-06 55.1 5.7 126 17-144 356-495 (696)
230 COG1253 TlyC Hemolysins and re 92.5 0.47 1E-05 51.8 8.7 50 468-522 280-329 (429)
231 KOG2118 Predicted membrane pro 91.4 0.29 6.2E-06 54.1 5.5 132 455-636 200-334 (498)
232 COG4535 CorC Putative Mg2+ and 88.8 0.074 1.6E-06 51.3 -1.6 59 572-632 69-129 (293)
233 TIGR03415 ABC_choXWV_ATP choli 88.7 0.85 1.8E-05 48.8 6.2 54 460-521 327-380 (382)
234 COG4175 ProV ABC-type proline/ 82.8 2.2 4.8E-05 43.6 5.3 53 464-522 332-384 (386)
235 TIGR02865 spore_II_E stage II 80.1 1.3E+02 0.0029 35.5 19.5 83 358-441 197-289 (764)
236 COG4536 CorB Putative Mg2+ and 79.0 4 8.7E-05 42.5 5.7 48 468-520 276-323 (423)
237 COG1125 OpuBA ABC-type proline 76.9 3.6 7.8E-05 40.9 4.5 40 586-628 269-308 (309)
238 COG1125 OpuBA ABC-type proline 75.7 3.9 8.4E-05 40.7 4.4 58 456-518 246-307 (309)
239 PRK11388 DNA-binding transcrip 55.7 18 0.00039 41.7 5.5 147 432-621 13-162 (638)
240 PF10518 TAT_signal: TAT (twin 52.5 12 0.00025 23.2 1.8 23 111-133 3-25 (26)
241 PF01102 Glycophorin_A: Glycop 50.7 25 0.00054 30.9 4.2 23 196-219 60-82 (122)
242 COG2216 KdpB High-affinity K+ 45.5 18 0.0004 39.5 3.1 50 586-639 412-461 (681)
243 PRK01844 hypothetical protein; 33.4 1E+02 0.0023 24.2 4.7 21 200-220 4-24 (72)
244 TIGR03546 conserved hypothetic 32.8 2.1E+02 0.0045 26.4 7.5 33 109-142 12-44 (154)
245 PRK10490 sensor protein KdpD; 29.1 4.6E+02 0.0099 31.7 11.8 38 179-219 461-498 (895)
246 COG5336 Uncharacterized protei 29.0 1.9E+02 0.0041 24.8 5.9 17 199-215 74-90 (116)
247 smart00594 UAS UAS domain. 27.6 43 0.00094 29.3 2.1 67 454-520 48-121 (122)
248 COG3763 Uncharacterized protei 27.2 1.6E+02 0.0035 23.0 4.8 21 200-220 4-24 (71)
249 PRK09765 PTS system 2-O-a-mann 21.5 1.3E+03 0.028 26.7 13.4 23 118-141 527-550 (631)
250 PRK10535 macrolide transporter 20.5 1.7E+02 0.0036 34.0 5.6 58 205-262 576-634 (648)
No 1
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-116 Score=910.67 Aligned_cols=621 Identities=60% Similarity=1.005 Sum_probs=574.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHH
Q 006517 2 GFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTG 81 (642)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~ig 81 (642)
+|+.|+.+.+.++++++.++.+++|.|+||||||||+|+||++.|+.+++||++.|+++++.++++|+.+|||||+||.|
T Consensus 137 ~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsG 216 (762)
T KOG0474|consen 137 SLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSG 216 (762)
T ss_pred HHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 006517 82 ACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVV 161 (642)
Q Consensus 82 a~ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va 161 (642)
+++|+.++|+.|..+++.|+|+|+|+|++|||++++||+|||+||+|+||+||++|++||.+++|+..++||.||++.++
T Consensus 217 a~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~ 296 (762)
T KOG0474|consen 217 SVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIV 296 (762)
T ss_pred HHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchh
Q 006517 162 AVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFK 241 (642)
Q Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~ 241 (642)
+++++.++.++.+++|+.|+.+.++.|++......|+.+|+++++++|+++|++|++|+.++.+...++.+ ..+.+..|
T Consensus 297 ~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~k 375 (762)
T KOG0474|consen 297 AFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGK 375 (762)
T ss_pred HHhHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHH
Confidence 99999888999999999999999999999866678999999999999999999999999997777666655 55677889
Q ss_pred HHHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCc
Q 006517 242 VLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSK 321 (642)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~ 321 (642)
++++++++++++++.|..|++.+|.|||.+.....||+ |+|++|+||++++++++++|++++++|+..+ +
T Consensus 376 vlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~---------f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~-~ 445 (762)
T KOG0474|consen 376 VLEALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPT---------FFCPDGEYNDLATLFFNTNDDAVRNLFHSPT-N 445 (762)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCcc---------ccCCCCchhHHHHHHcCCcHHHHHHHhcCCC-C
Confidence 99999999999999999999999999997644334553 8999999999999999999999999999866 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcccCCChhHHHHHHhhhhhcccccchhhHh
Q 006517 322 EFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLC 401 (642)
Q Consensus 322 ~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~pls~~ 401 (642)
+|....|++|++..++++++|+|..+|.|+|.|++.+||+.||++|.++..+..++||.||++||||+++|++|+++|.+
T Consensus 446 ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~~id~G~yAllGAAa~LGG~mRMTvSL~ 525 (762)
T KOG0474|consen 446 EFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYTNIDPGLYALLGAAAFLGGVMRMTVSLC 525 (762)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhhccCchHHHHHhHHHHhCCeEEEEeeee
Confidence 89999999999999999999999999999999999999999999999998878899999999999999999999999999
Q ss_pred hHHHhhcCCcccHHHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCccccccccccccccccccccCCeEEecCcccHHHH
Q 006517 402 VILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNI 481 (642)
Q Consensus 402 vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~~~~iy~~~l~~~g~~~~~~~~~~~l~~~~V~diM~~~~~~v~~~~tv~~~ 481 (642)
||++|+| +-.+++|+|++-++|.++.+.|++++||.+++.+|+|++++++++.+++++++|+|++++++++..+.+..+
T Consensus 526 VIl~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~I 604 (762)
T KOG0474|consen 526 VILLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVI 604 (762)
T ss_pred hHHHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHH
Confidence 9999999 557888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccc-cccCCcccccccchhhhcccCCCCCccccccc
Q 006517 482 MHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQ-KTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLD 560 (642)
Q Consensus 482 ~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (642)
.+++++++|++|||||+....+.+++.|+|-|+++..+++++++.++ +...+......++.+|+.+ +.++++|+.
T Consensus 605 v~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~----r~~~i~dv~ 680 (762)
T KOG0474|consen 605 VDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAK----REPSIEDVH 680 (762)
T ss_pred HHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhh----cCCchhhhh
Confidence 99999999999999998643344799999999999999998887643 2222222234555666654 456889999
Q ss_pred cchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhhccCcccccc
Q 006517 561 IKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHIVNR 640 (642)
Q Consensus 561 ~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~~~~~~~~~~ 640 (642)
+++++++.++|++++|+++|++|++++++.++..+|++.++||+.||++ .++++|++||+|+.++...+..++..+.
T Consensus 681 lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~---~~~~~gilTR~D~~~~~~l~~~~~v~~~ 757 (762)
T KOG0474|consen 681 LTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK---TNRVVGILTRKDLARYRILGLEPHVDEL 757 (762)
T ss_pred cchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC---CCceeEEEehhhhhhHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999998 7789999999999998888888777654
Q ss_pred C
Q 006517 641 H 641 (642)
Q Consensus 641 ~ 641 (642)
|
T Consensus 758 ~ 758 (762)
T KOG0474|consen 758 K 758 (762)
T ss_pred c
Confidence 3
No 2
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-85 Score=678.27 Aligned_cols=547 Identities=32% Similarity=0.525 Sum_probs=448.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHH
Q 006517 2 GFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTG 81 (642)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~ig 81 (642)
+|++|+.+++.+++++..+++.++|+|.||||||+|.++.|..+++++..++++.|.++..++++||+|+|||||+||++
T Consensus 129 ~~l~y~~~al~fa~la~~lv~~~AP~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA 208 (696)
T KOG0475|consen 129 SYLIYVLWALLFAFLAVSLVKVVAPYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIA 208 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheehhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeee
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 006517 82 ACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVV 161 (642)
Q Consensus 82 a~ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va 161 (642)
.++|+.+++. +.|+-+|+..+|+++++++|||+|++|||||||++|++|++..+|+.+.+|++|+++.+|
T Consensus 209 ~c~g~~~s~~----------f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsA 278 (696)
T KOG0475|consen 209 TCIGNIFSKI----------FPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSA 278 (696)
T ss_pred echhhhHhhh----------hhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHH
Confidence 9999999872 223334788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchh
Q 006517 162 AVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFK 241 (642)
Q Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~ 241 (642)
..+++.+ +.|+++...+|.+++ +.+|+..|+++|+++|++||+.|.+|.|++.++.++++.. ....++
T Consensus 279 v~~L~~i---------~pf~~~~~vLf~V~Y-~~~W~~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~--~lg~~p 346 (696)
T KOG0475|consen 279 VTALRSI---------NPFGNSRLVLFYVDY-DRPWSLFELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS--KLGKFP 346 (696)
T ss_pred HHHHeee---------cccCCCceEEEEEec-cCCcccccchHHHHHHHhhhHHHHHHHHHHHHHHhccchh--hccCCc
Confidence 9988875 688888888888874 6889999999999999999999999999999999888765 245678
Q ss_pred HHHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCc
Q 006517 242 VLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSK 321 (642)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~ 321 (642)
+++++.++++|+++.|+.|+++.....-...-.+.|+ ...-.. +. .+..
T Consensus 347 v~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~--------------~~~s~~------------l~-----~~~~ 395 (696)
T KOG0475|consen 347 VLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCS--------------PSSSTS------------LP-----ETTV 395 (696)
T ss_pred chhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcC--------------Cccccc------------Cc-----ccch
Confidence 9999999999999999999983110000000001111 000000 00 0000
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcc-----------cCCChhHHHHHHhhhhh
Q 006517 322 EFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL-----------SDLDTGLFALLGAASFL 390 (642)
Q Consensus 322 ~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~-----------~~~~~~~~alvG~aa~~ 390 (642)
.-....|+..+++|+++|++|+|+++|+|+|+|+|++||+.||++|.+.... ..+.|+.||++||||.+
T Consensus 396 ~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~L 475 (696)
T KOG0475|consen 396 YSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATL 475 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHh
Confidence 0123456677789999999999999999999999999999999999776542 24679999999999999
Q ss_pred cccccchhhHhhHHHhhcCCcccHHHHHHHHHHHHHHHhhc-CchHHHHHHHhcCCCccccccccccccccccccccC--
Q 006517 391 GGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSG-- 467 (642)
Q Consensus 391 ag~~~~pls~~vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~-~~~iy~~~l~~~g~~~~~~~~~~~l~~~~V~diM~~-- 467 (642)
+|++|+|+|.+||+||+||++++++|+|+|+.+|.++++.+ ..++||...+.+|+|+++++++.. +.-..++|.+
T Consensus 476 sGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~p~~ 553 (696)
T KOG0475|consen 476 SGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFLDSKSEFS--STLAIPVMEPCR 553 (696)
T ss_pred cCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCcccccccc--cchhhhhhchhc
Confidence 99999999999999999999999999999999999999988 778999999999999997665433 3334555544
Q ss_pred -C--eEEecCc-ccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchh
Q 006517 468 -P--LITFSGV-EKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAH 543 (642)
Q Consensus 468 -~--~~~v~~~-~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~ 543 (642)
+ ..+++++ ++++|+..+|+++.+++|||+-++ ++++++|++.++|+...+.+....++.....+ .
T Consensus 554 ~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~---~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~-------~- 622 (696)
T KOG0475|consen 554 SESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE---DSQRLVGFVLRRNLFLAILNARKIQSFIVTTS-------I- 622 (696)
T ss_pred CchhheeccccceeHHHHHHHHhhcccCCceEEEcc---ccceeEEEEchHHHHHHHhhhccccccceecc-------c-
Confidence 3 5555555 899999999999999999998654 56999999999999877764322211110000 0
Q ss_pred hhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehh
Q 006517 544 DFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRH 623 (642)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~ 623 (642)
.+.++.. ......+...+++++|+.+|+++.+++|.+.++++|++.++++..|.. +|++.|+||++
T Consensus 623 ~f~~~~~----------~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~----~G~l~Giitkk 688 (696)
T KOG0475|consen 623 YFNDPSP----------SAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK----NGILLGIITKK 688 (696)
T ss_pred ccCCCCc----------cccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc----CCeeEeeeehH
Confidence 1111110 011223446789999999999999999999999999999999998887 79999999999
Q ss_pred hcchh
Q 006517 624 DFMPE 628 (642)
Q Consensus 624 Dll~~ 628 (642)
|+++.
T Consensus 689 d~l~~ 693 (696)
T KOG0475|consen 689 DCLRH 693 (696)
T ss_pred HHHHh
Confidence 99964
No 3
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.4e-76 Score=664.20 Aligned_cols=498 Identities=19% Similarity=0.275 Sum_probs=413.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccCCCHHH-HHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHH
Q 006517 4 VANTSINLGLAILAAILCAYIAPAAAGSGIPE-VKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGA 82 (642)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~-v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga 82 (642)
++.++.|+.++++++++..+..+.++++|+++ ++++.++ .+.+++|+.+.|++++++++++|+|+|||||++|+|+
T Consensus 70 ~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga 146 (574)
T PRK01862 70 YVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYMEAVALG---DGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAA 146 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHHHHHcC---CCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHH
Confidence 33467778888888888777777777555555 6666665 5678899999999999999999999999999999999
Q ss_pred HHHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 006517 83 CIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVA 162 (642)
Q Consensus 83 ~ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va~ 162 (642)
++|++++| +++. +++++|.+++||+|||+||+||||++|++|++|++.++|+.+.++++++++++++
T Consensus 147 ~~~~~~~~-----------~~~~--~~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~ 213 (574)
T PRK01862 147 LAASLVGR-----------FAHF--DPPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVAN 213 (574)
T ss_pred HHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHH
Confidence 99999997 3332 5678899999999999999999999999999999999999899999999988888
Q ss_pred HHHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhH
Q 006517 163 VVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKV 242 (642)
Q Consensus 163 ~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~ 242 (642)
++.+.+ ++.++ .|+++ ..+.+++.++++++++|++||++|.+|+++.++.++++++++. ++.
T Consensus 214 ~v~~~~-----------~g~~~--~~~~~-~~~~~~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~~~~----~~~ 275 (574)
T PRK01862 214 IVMREF-----------AGYQP--PYEMP-VFPAVTGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKRLPV----PLP 275 (574)
T ss_pred HHHHHH-----------cCCCc--eeeCC-CcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----chh
Confidence 777653 45444 55665 2456788999999999999999999999999999887765432 233
Q ss_pred HHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcc
Q 006517 243 LLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKE 322 (642)
Q Consensus 243 ~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~ 322 (642)
+...+++++++++.++.|++ .|. +| +.+++.+.+ +
T Consensus 276 ~~~~~~gl~~g~l~~~~p~~-----------------~g~------------G~------------~~i~~~~~~----~ 310 (574)
T PRK01862 276 VRLALGGLLVGVISVWVPEV-----------------WGN------------GY------------SVVNTILHA----P 310 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------hcC------------CH------------HHHHHHHcC----C
Confidence 44566777888888888876 221 12 234444432 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhccc---CCChhHHHHHHhhhhhcccccchhh
Q 006517 323 FHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALS---DLDTGLFALLGAASFLGGTMRMTVS 399 (642)
Q Consensus 323 ~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~---~~~~~~~alvG~aa~~ag~~~~pls 399 (642)
+.+..++.++++|+++|++|+|+|+|||.|+|++++||++|+++|.+++... ..+|..|+++||+|++++++|+|+|
T Consensus 311 ~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaa~~aa~~~aPlt 390 (574)
T PRK01862 311 WTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGHTSAPFAYAMVGMGAFLAGATQAPLM 390 (574)
T ss_pred chHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHH
Confidence 4455667778899999999999999999999999999999999999887532 2357789999999999999999999
Q ss_pred HhhHHHhhcCCcccHHHHHHHHHHHHHHHhhc-CchHHHHHHHhcCCCccccccccccccccccccccCCeEEecCcccH
Q 006517 400 LCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKV 478 (642)
Q Consensus 400 ~~vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~-~~~iy~~~l~~~g~~~~~~~~~~~l~~~~V~diM~~~~~~v~~~~tv 478 (642)
++++++|+|+++++++|+|+++++|+++++.+ .+++|+.++++++.+ .+.+.+++++|+|+|++++.++++++++
T Consensus 391 ~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~----~~~~~L~~~~V~dim~~~~~~v~~~~tl 466 (574)
T PRK01862 391 AILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDE----AERERLRTTQMRELIQPAQTVVPPTASV 466 (574)
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcccc----chhhHHhhCcHHHHhcCCCceeCCCCCH
Confidence 99999999999999999999999999999988 899999999988642 3456789999999999999999999999
Q ss_pred HHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcccCCCCCccccc
Q 006517 479 GNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLED 558 (642)
Q Consensus 479 ~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (642)
+|+.+.+++++++.+||+|++ ++++|+++++|+.+.+.+++.
T Consensus 467 ~ea~~~l~~~~~~~~~VvD~~-----g~lvGiVt~~dL~~~l~~~~~--------------------------------- 508 (574)
T PRK01862 467 ADMTRVFLEYPVKYLYVVDDD-----GRFRGAVALKDITSDLLDKRD--------------------------------- 508 (574)
T ss_pred HHHHHHHHhCCCceEEEEcCC-----CeEEEEEEHHHHHHHhhcccc---------------------------------
Confidence 999999999999999999987 899999999999865432110
Q ss_pred cccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhh
Q 006517 559 LDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 631 (642)
Q Consensus 559 ~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~ 631 (642)
+...+++++|++++.++++|++++|++++|.+++.+++||+|+ +++++++|+||++|+++.+.+
T Consensus 509 --------~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~-~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 509 --------TTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVES-EASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred --------cccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC-CCCCeEEEEEEHHHHHHHHHh
Confidence 0012356788888899999999999999999999999999996 222589999999999987654
No 4
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-78 Score=633.70 Aligned_cols=480 Identities=29% Similarity=0.534 Sum_probs=387.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHH
Q 006517 2 GFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTG 81 (642)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~ig 81 (642)
.|+.|+.|++++.++++..+++++|+|-||||||||.+++|+..++|++.|++++|.++..+++|||+++|+|||+|||+
T Consensus 139 ~yl~Wv~y~v~Li~fSA~f~h~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHia 218 (931)
T KOG0476|consen 139 AYLSWVGYPVGLVLFSAGFCHYIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIA 218 (931)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 006517 82 ACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVV 161 (642)
Q Consensus 82 a~ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va 161 (642)
+.+++.+++..+ +..-..|.|+....+++++|+|.|+|+.|.||+|||||++|++++||.+++|||.||+++++
T Consensus 219 sivA~~l~k~~a------~~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcs 292 (931)
T KOG0476|consen 219 SIVAALLSKVTA------CQFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCS 292 (931)
T ss_pred HHHHHHHHHHHH------hhccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhH
Confidence 999999987221 12334567888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCcccccCCCceeEEeecCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhccC
Q 006517 162 AVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSA-KNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYS---IINERG 237 (642)
Q Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~---~~~~~~ 237 (642)
|+++|.+..|....... -...|+.++. +.+|++.|++.|+++|++||++|++|+++.+++.-+.+ ..++..
T Consensus 293 A~vFR~lavf~v~~~~t-----ItA~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f 367 (931)
T KOG0476|consen 293 AFVFRLLAVFFVEAEVT-----ITALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLF 367 (931)
T ss_pred HHHHHHHHHHcccchhh-----hHHHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHH
Confidence 99999987664311000 1123444432 34789999999999999999999999998876433222 112222
Q ss_pred CchhHHHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCC--CCCcccccCCCCcchhhhhhhccC------chH
Q 006517 238 PIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGR--SGNYKNFQCPAGHYNDLASLFLNT------NDD 309 (642)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~--~g~~~~~~~~~~~y~~~~~l~~~~------~~~ 309 (642)
..++++.+++++++++.+.|..- + |+ .|.+.. -..+.+++.|- .+.
T Consensus 368 ~k~~llyp~~~a~v~ssltfP~G-l------------------G~f~aG~l~f-------~etl~~fF~Nctw~~~~~~~ 421 (931)
T KOG0476|consen 368 QKSRLLYPAFIALVFSSLTFPPG-L------------------GQFLAGRLSF-------RETLVDFFDNCTWWVQTNDS 421 (931)
T ss_pred hhCccHHHHHHHHHHhheecCCc-c------------------cccccccccH-------HhHHHHHhhcCeeeecCCCc
Confidence 34577888888988888776421 1 11 000000 00000000000 000
Q ss_pred HH--HhhhccCCC---cchhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcc-----------
Q 006517 310 AI--RNLFSSGTS---KEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL----------- 373 (642)
Q Consensus 310 ~i--~~~~~~~~~---~~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~----------- 373 (642)
.. ......+.. ....+..|.++.+.||+++.++....+|.|+|+|.+++||++||++|+.+...
T Consensus 422 ~~~~~~~~~hW~~p~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~ 501 (931)
T KOG0476|consen 422 ELCPAHILTHWYHPEGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGIT 501 (931)
T ss_pred CCCChhhhhhhcCCCCceeeHHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCcc
Confidence 00 011111111 22235678899999999999999999999999999999999999999776531
Q ss_pred cCCChhHHHHHHhhhhhcccccchhhHhhHHHhhcCCcccHHHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCccccccc
Q 006517 374 SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAE 453 (642)
Q Consensus 374 ~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~~~~iy~~~l~~~g~~~~~~~~~ 453 (642)
..+.||.||++|+|||.++++ .++|.+||++|+|||...++|+|+|+++|+.++..+++|+||..++.|++||+++...
T Consensus 502 ~~I~PG~YAVVGAAAfsGaVT-HTvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpp 580 (931)
T KOG0476|consen 502 PPIHPGGYAVVGAAAFSGAVT-HTVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPP 580 (931)
T ss_pred Cccccchhhhhhhhhhcccee-eeeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCC
Confidence 246799999999999976666 4999999999999999999999999999999999999999999999999999998754
Q ss_pred c--ccccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhc
Q 006517 454 P--YMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 522 (642)
Q Consensus 454 ~--~l~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~ 522 (642)
. ....++|+|+|.+++..+..++|.+|+.+.++.+..+.||+||+. ++..|+|.|.|++|..++++
T Consensus 581 s~~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~---esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 581 SRSSVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESK---ESMILLGSVARRYLTALLQR 648 (931)
T ss_pred cccceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCc---ccceeeehhHHHHHHHHHHh
Confidence 3 356789999999999999999999999999998889999999985 67999999999999988875
No 5
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=2.1e-69 Score=584.06 Aligned_cols=383 Identities=38% Similarity=0.681 Sum_probs=327.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHH
Q 006517 2 GFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTG 81 (642)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~ig 81 (642)
.|+.|+++++++++++++++++++|+++||||||||++++|.+.++++++|+++.|++++++++++|+|+|||||++|+|
T Consensus 27 ~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iG 106 (445)
T cd03684 27 NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFIIRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIA 106 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHH
Confidence 47789999999999999999999999999999999999999878899999999999999999999999999999999999
Q ss_pred HHHHHHhhccCccccchhhhhhhcc-CChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHH
Q 006517 82 ACIANLLGQGGSKKYHLTWRWLRYF-KNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAV 160 (642)
Q Consensus 82 a~ig~~~~~~~~~~~~l~~~~~~~~-~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~v 160 (642)
+++|++++| |++.+ .++++||++++||+|||+||+||||+||++|++||+.++|+.+.+|++++++++
T Consensus 107 a~ia~~l~~-----------~~~~~~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~ 175 (445)
T cd03684 107 TCVGNIISR-----------LFPKYRRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALV 175 (445)
T ss_pred HHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHH
Confidence 999999987 33222 377899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCch
Q 006517 161 VAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIF 240 (642)
Q Consensus 161 a~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~ 240 (642)
++++.+.+ ..++.++...|+++. ..+++..|+++++++|++||++|.+|+++++++++++++.+. +.+
T Consensus 176 a~~v~~~~---------~~~~~~~~~~f~~~~-~~~~~~~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~ 243 (445)
T cd03684 176 AAFTLKSL---------NPFGTGRLVLFEVEY-DRDWHYFELIPFILLGIFGGLYGAFFIKANIKWARFRKKSLL--KRY 243 (445)
T ss_pred HHHHHHHh---------cccCCCCceEEeccC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chh
Confidence 99888764 234444445666542 356788999999999999999999999999999998876641 234
Q ss_pred hHHHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhcc---
Q 006517 241 KVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSS--- 317 (642)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~--- 317 (642)
+++.+.++++++++++++.|+.. +. | + +.++.++..
T Consensus 244 ~~~~~~l~~l~~~~l~~~~p~~~-----------------~~-g-----------~------------~~i~~l~~~~~~ 282 (445)
T cd03684 244 PVLEVLLVALITALISFPNPYTR-----------------LD-M-----------T------------ELLELLFNECEP 282 (445)
T ss_pred HHHHHHHHHHHHHHHHhChHHHc-----------------cc-h-----------h------------hHHHHHHhcCCC
Confidence 67788889999999999888862 11 0 0 111111110
Q ss_pred -------------CCCcc-hhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcc----------
Q 006517 318 -------------GTSKE-FHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL---------- 373 (642)
Q Consensus 318 -------------~~~~~-~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~---------- 373 (642)
..... ..+..+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~ 362 (445)
T cd03684 283 GDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFF 362 (445)
T ss_pred cccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHHhhCCccccc
Confidence 00011 234556777889999999999999999999999999999999999998642
Q ss_pred -------cCCChhHHHHHHhhhhhcccccchhhHhhHHHhhcCCcccHHHHHHHHHHHHHHHhhc-CchHHHHHHHhcCC
Q 006517 374 -------SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVKLKGL 445 (642)
Q Consensus 374 -------~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~-~~~iy~~~l~~~g~ 445 (642)
...+|+.||++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+ ++++||+++++||+
T Consensus 363 ~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~ 442 (445)
T cd03684 363 ACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGY 442 (445)
T ss_pred ccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCC
Confidence 1367899999999999999999999999999999999999999999999999999999 68999999999999
Q ss_pred Ccc
Q 006517 446 PYL 448 (642)
Q Consensus 446 ~~~ 448 (642)
|++
T Consensus 443 p~l 445 (445)
T cd03684 443 PFL 445 (445)
T ss_pred CCC
Confidence 985
No 6
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=6.1e-68 Score=575.15 Aligned_cols=381 Identities=59% Similarity=1.016 Sum_probs=329.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHH
Q 006517 3 FVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGA 82 (642)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga 82 (642)
|+.|+.+++++++++++++.+++|+++||||||+++++||.+.++.+++|+++.|++++++++++|+|+|||||++|+||
T Consensus 78 ~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa 157 (466)
T cd03685 78 FLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGA 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHH
Confidence 56788999999999999999999999999999999999998878889999999999999999999999999999999999
Q ss_pred HHHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 006517 83 CIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVA 162 (642)
Q Consensus 83 ~ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va~ 162 (642)
++|++++|..++.++++++++|.++++++||++++||+|||+||+||||++|++|++||+.++|+.+..|+.++++.+++
T Consensus 158 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias 237 (466)
T cd03685 158 CIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVT 237 (466)
T ss_pred HHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHH
Confidence 99999998666566666667787778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhH
Q 006517 163 VVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKV 242 (642)
Q Consensus 163 ~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~ 242 (642)
++.+.+...........|+.+....|.+.....++++.++++++++|++||++|.+|+++++++++++++.++.++++|+
T Consensus 238 ~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~ 317 (466)
T cd03685 238 FTLNFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRINHKGKLLKV 317 (466)
T ss_pred HHHHHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 88887654432222234443333345443334567889999999999999999999999999999988776543455677
Q ss_pred HHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcc
Q 006517 243 LLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKE 322 (642)
Q Consensus 243 ~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~ 322 (642)
+.+++++++++++.+
T Consensus 318 l~~~lv~~~~~~~~~----------------------------------------------------------------- 332 (466)
T cd03685 318 LEALLVSLVTSVVAF----------------------------------------------------------------- 332 (466)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 777777776654311
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcc---cCCChhHHHHHHhhhhhcccccchhh
Q 006517 323 FHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVS 399 (642)
Q Consensus 323 ~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~---~~~~~~~~alvG~aa~~ag~~~~pls 399 (642)
...+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.. ...+|+.|+++||+|+++|++|+|+|
T Consensus 333 --~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~aliGmaa~lag~~raPlt 410 (466)
T cd03685 333 --PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLYALLGAAAFLGGVMRMTVS 410 (466)
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccccCCCchHHHHHHHHHHHhHHhhhhHH
Confidence 1224556678999999999999999999999999999999999998753 35689999999999999999999999
Q ss_pred HhhHHHhhcCCcccHHHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCcccc
Q 006517 400 LCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEA 450 (642)
Q Consensus 400 ~~vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~~~~iy~~~l~~~g~~~~~~ 450 (642)
+++|++|+||++++++|+|+++++|+.+++.+++++||.++++||+|++++
T Consensus 411 ~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~ 461 (466)
T cd03685 411 LTVILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHN 461 (466)
T ss_pred HHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccC
Confidence 999999999999999999999999999999888899999999999999875
No 7
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=1.4e-65 Score=551.97 Aligned_cols=367 Identities=32% Similarity=0.599 Sum_probs=309.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHH
Q 006517 3 FVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGA 82 (642)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga 82 (642)
|+.|+++|+.+++++++++++++|+++|||||||+++++|.+.++++++|+++.|++++++++++|+|+|||||++|+|+
T Consensus 45 ~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa 124 (426)
T cd03683 45 YLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKTILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISS 124 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHH
Confidence 57889999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred HHHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 006517 83 CIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVA 162 (642)
Q Consensus 83 ~ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va~ 162 (642)
++|+.++| .++.+ . ..++++.+||++++||+|||+||+||||++|++|++||+.++|+.+.+|+++++|++++
T Consensus 125 ~i~~~~~~----~~~~~--~-~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~ 197 (426)
T cd03683 125 IVAALLSK----LTTFF--S-GIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGA 197 (426)
T ss_pred HHHHHHHh----hcccc--c-ccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHH
Confidence 99999997 22210 0 01346788999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhCCcccccCCCce-eEEeec-CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cC
Q 006517 163 VVLRGFIEFCRSGRCGLFGQGGL-IMFDVN-SAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINE---RG 237 (642)
Q Consensus 163 ~v~~~~~~~~~~~~~~~~~~~~~-~~f~~~-~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~---~~ 237 (642)
++.+.+..+.. +..+. ..|... ....+++..++++++++|++||++|.+|++++.++.+++++.+. ..
T Consensus 198 ~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T cd03683 198 FTFRLLAVFFS-------DQETITALFKTTFFVDFPFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFL 270 (426)
T ss_pred HHHHHHHhhcC-------CCccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 88776543211 11110 012211 12346788999999999999999999999999999888765432 12
Q ss_pred CchhHHHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhcc
Q 006517 238 PIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSS 317 (642)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~ 317 (642)
+..+.+.+++++++++++.+ |
T Consensus 271 ~~~~~l~~~~~g~~~~~l~~--p--------------------------------------------------------- 291 (426)
T cd03683 271 KRSPLLYPAIVALLTAVLTF--P--------------------------------------------------------- 291 (426)
T ss_pred ccchHHHHHHHHHHHHHHHH--H---------------------------------------------------------
Confidence 34567777777777655321 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhccc----------CCChhHHHHHHhh
Q 006517 318 GTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALS----------DLDTGLFALLGAA 387 (642)
Q Consensus 318 ~~~~~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~----------~~~~~~~alvG~a 387 (642)
+..++++++.|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.+. ..+|+.|+++||+
T Consensus 292 -------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGma 364 (426)
T cd03683 292 -------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAA 364 (426)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHH
Confidence 23456677899999999999999999999999999999999999887532 2578999999999
Q ss_pred hhhcccccchhhHhhHHHhhcCCcccHHHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCcccc
Q 006517 388 SFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEA 450 (642)
Q Consensus 388 a~~ag~~~~pls~~vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~~~~iy~~~l~~~g~~~~~~ 450 (642)
|++++++|+|.++ ++++|+||++++++|+|+++++|+++++.+++|+||.+++.||+|++|+
T Consensus 365 a~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 365 AFSGAVTHTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHHHHhHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 9999999997766 6999999999999999999999999999888899999999999999874
No 8
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=7.6e-65 Score=545.16 Aligned_cols=363 Identities=39% Similarity=0.670 Sum_probs=308.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHH
Q 006517 2 GFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTG 81 (642)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~ig 81 (642)
.|+.|+.+++++++++++++++++|+++||||||+|+++||.+.++++++|+++.|++++++++++|+|+|||||++|+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iG 115 (416)
T cd01036 36 GYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHLPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLG 115 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHH
Confidence 36678999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 006517 82 ACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVV 161 (642)
Q Consensus 82 a~ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va 161 (642)
+++|+++++..+..++...++++.++++++||++++||+|||+||+||||++|++|++||+.++|+.+.+|+++++++++
T Consensus 116 a~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a 195 (416)
T cd01036 116 AMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVS 195 (416)
T ss_pred HHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHH
Confidence 99999999843322222223445556888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCcccccCC----Ccee--EEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 006517 162 AVVLRGFIEFCRSGRCGLFGQ----GGLI--MFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINE 235 (642)
Q Consensus 162 ~~v~~~~~~~~~~~~~~~~~~----~~~~--~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~ 235 (642)
+++.+.+..+.. .+.. ++.+ .++++ ...+++..++++++++|++||++|.+|+++++++.+++++.++
T Consensus 196 ~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~ 269 (416)
T cd01036 196 AFVIQIYNSFNS-----GFELLDRSSAMFLSLTVFE-LHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLF 269 (416)
T ss_pred HHHHHHhccccC-----CccccccccccceeccccC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888877543211 1110 0001 12222 2356788999999999999999999999999999998876532
Q ss_pred -cCCchhHHHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhh
Q 006517 236 -RGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNL 314 (642)
Q Consensus 236 -~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~ 314 (642)
+.++++++++.+++++++++.+
T Consensus 270 ~~~~~~~~~~~~~~~~i~~~~~~--------------------------------------------------------- 292 (416)
T cd01036 270 RKTARYRVLEPVLFTLIYSTIHY--------------------------------------------------------- 292 (416)
T ss_pred ccccchhHHHHHHHHHHHHHHHH---------------------------------------------------------
Confidence 1345677888888888766432
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhccc-----------CCChhHHHH
Q 006517 315 FSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALS-----------DLDTGLFAL 383 (642)
Q Consensus 315 ~~~~~~~~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~-----------~~~~~~~al 383 (642)
+..++++++.|+++|++|+++|+|||+|+|++++||++|+++|.+++... ..+|+.||+
T Consensus 293 ----------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al 362 (416)
T cd01036 293 ----------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADPGVYAL 362 (416)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccChHHHHH
Confidence 12345677899999999999999999999999999999999999987532 368999999
Q ss_pred HHhhhhhcccccchhhHhhHHHhhcCCcccHHHHHHHHHHHHHHHhhcCchHHH
Q 006517 384 LGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYD 437 (642)
Q Consensus 384 vG~aa~~ag~~~~pls~~vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~~~~iy~ 437 (642)
+||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+++|+||
T Consensus 363 vGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~~siY~ 416 (416)
T cd01036 363 IGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFCESLYH 416 (416)
T ss_pred HHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999999999999999999999999999999999999998889986
No 9
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=4.3e-59 Score=499.26 Aligned_cols=360 Identities=21% Similarity=0.304 Sum_probs=298.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC--ccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHH
Q 006517 5 ANTSINLGLAILAAILCAYIAPA--AAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGA 82 (642)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~p~--a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga 82 (642)
++++.|++++++++++.+++.|. .+++|++|+++.++. ++++++|+.+.|++++++++++|+|+|||||++|+|+
T Consensus 52 ~~~l~p~~ggll~g~~~~~~~~~~~~~~~g~~~vi~av~~---~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa 128 (418)
T PRK01610 52 RRLLTPALGGLAAGLLLWGWQKFTQQRPHAPTDYMEALQT---DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAA 128 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccccCCCcHHHHHHHHc---CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHH
Confidence 45677888899999988888764 789999999887765 4679999999999999999999999999999999999
Q ss_pred HHHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 006517 83 CIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVA 162 (642)
Q Consensus 83 ~ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va~ 162 (642)
++|++++| +++ ++++||.+++||+|||+||+||||++|++|++|++.++++.+.+.++++++++++
T Consensus 129 ~~g~~~~~-----------~~~---~~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~ 194 (418)
T PRK01610 129 LAASCFAQ-----------RFT---PRQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVAL 194 (418)
T ss_pred HHHHHHHH-----------HhC---ChHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999997 333 4678999999999999999999999999999999998888877778888777777
Q ss_pred HHHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhH
Q 006517 163 VVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKV 242 (642)
Q Consensus 163 ~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~ 242 (642)
++.+. +++.++ ..|+++ ....+++.++++++++|++||++|.+|+++.++.++++++++.+ +.
T Consensus 195 ~v~~~-----------~~g~~~-~~~~i~-~~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~~~~----~~ 257 (418)
T PRK01610 195 LTTNL-----------LNGSDA-LLYNVQ-LSVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFVSLKLA----PP 257 (418)
T ss_pred HHHHH-----------HcCCCC-CeeecC-CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----hh
Confidence 66654 233221 246665 24567889999999999999999999999999998887765432 33
Q ss_pred HHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcc
Q 006517 243 LLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKE 322 (642)
Q Consensus 243 ~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~ 322 (642)
+.+.+++++++++.++.|++ .|. +| +.++..+.. +
T Consensus 258 ~~~~lggli~g~l~~~~p~~-----------------~G~------------G~------------~~i~~~~~~----~ 292 (418)
T PRK01610 258 WQLALGGLIVGLLSLFTPAV-----------------WGN------------GY------------SVVQSFLTA----P 292 (418)
T ss_pred HHHHHHHHHHHHHHHHhhHH-----------------hCC------------cH------------HHHHHHHcC----C
Confidence 45677788888888888876 221 12 223333321 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhccc---CCChhHHHHHHhhhhhcccccchhh
Q 006517 323 FHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALS---DLDTGLFALLGAASFLGGTMRMTVS 399 (642)
Q Consensus 323 ~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~---~~~~~~~alvG~aa~~ag~~~~pls 399 (642)
..+..++.+++.|+++|++|+|+|.|||.|+|++++||++|.++|++++... ...+..|+++||+|++++++|+|+|
T Consensus 293 ~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPlt 372 (418)
T PRK01610 293 PLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPDGEEITLLLGLTGMATLLAATTHAPIM 372 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHH
Confidence 3444566677899999999999999999999999999999999999997531 2336889999999999999999999
Q ss_pred HhhHHHhhcCCcccHHHHHHHHHHHHHHHhhc-CchHHHHHHHhc
Q 006517 400 LCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVKLK 443 (642)
Q Consensus 400 ~~vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~-~~~iy~~~l~~~ 443 (642)
++++++|+||++++++|+|+++++|+++++.+ ++++|+.++.++
T Consensus 373 aivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 373 STLMICEMTGEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence 99999999999999999999999999999988 899999998764
No 10
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=1e-59 Score=497.08 Aligned_cols=347 Identities=35% Similarity=0.585 Sum_probs=279.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHHHHHHHhhcc
Q 006517 12 GLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQG 91 (642)
Q Consensus 12 ~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga~ig~~~~~~ 91 (642)
+++++++++++++.|+++||||||+++.+++.+ +++++|+.+.|++++++++++|+|+|||||++|+|+++|++++|
T Consensus 1 ~~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~--~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~- 77 (355)
T PF00654_consen 1 IGGLLSGLLWKKFAPEAAGSGIPEVKAALRGKS--GRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGR- 77 (355)
T ss_dssp -HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHH-
T ss_pred CEEEEeeHHHHHHCCccCCCCHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHH-
Confidence 467889999999999999999999999998843 45999999999999999999999999999999999999999997
Q ss_pred CccccchhhhhhhccCChhh-hhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006517 92 GSKKYHLTWRWLRYFKNDRD-RRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIE 170 (642)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~~-~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va~~v~~~~~~ 170 (642)
++|+ ++++ +|.+++||+|||+||+||||++|++|++|++.++++.+.++++++++++++++.+.+.
T Consensus 78 ---~~~~---------~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~- 144 (355)
T PF00654_consen 78 ---RFRL---------SRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLF- 144 (355)
T ss_dssp ---HTT-----------CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHH-
T ss_pred ---hhcc---------cchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHc-
Confidence 3332 3344 7789999999999999999999999999999999999999999999999999888653
Q ss_pred HhhCCcccccCCCceeEEe-ecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHH
Q 006517 171 FCRSGRCGLFGQGGLIMFD-VNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVS 249 (642)
Q Consensus 171 ~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (642)
++++ .|+ ++. ..++++.++++++++|++||++|.+|+++.+++++++++++ +.+.++.+.+.+++
T Consensus 145 ----------~~~~--~f~~~~~-~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~i~g 210 (355)
T PF00654_consen 145 ----------GNHP--IFGSVPQ-LFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-RLKIPPILRPVIGG 210 (355)
T ss_dssp ----------TSS---SS---TT------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred ----------CcCc--ccccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHH
Confidence 3333 244 442 24788999999999999999999999999999999988875 33344566889999
Q ss_pred HHhhhhhccccc--cccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcchhHHH
Q 006517 250 LLTSCCSYGLPW--LSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLST 327 (642)
Q Consensus 250 l~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 327 (642)
++++++.++.|+ + .| ++++.++.++++. ...+.+..
T Consensus 211 l~~g~l~~~~p~~~~-----------------~g------------------------~G~~~i~~ll~~~-~~~~~~~~ 248 (355)
T PF00654_consen 211 LVIGLLAFFFPEGSV-----------------LG------------------------SGYELIQSLLSGS-PPWFSLGS 248 (355)
T ss_dssp HHHHHHHHSSGG-SG-----------------SS------------------------SSTTHHHHHCTT-----S-HHH
T ss_pred HHHHHHHHHHhhhcc-----------------cC------------------------CcHHHHHHHHcCC-cchhhHHH
Confidence 999999999887 4 12 1223355555432 12466778
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhccc----CCChhHHHHHHhhhhhcccccchhhHhhH
Q 006517 328 LLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALS----DLDTGLFALLGAASFLGGTMRMTVSLCVI 403 (642)
Q Consensus 328 ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~----~~~~~~~alvG~aa~~ag~~~~pls~~vi 403 (642)
++.+++.|+++|++|+++|+|||.|+|++++||++|++++.+++... ..+|+.|+++||+|++++++|+|+|++++
T Consensus 249 l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt~~vl 328 (355)
T PF00654_consen 249 LLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLTAIVL 328 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88999999999999999999999999999999999999999998641 23799999999999999999999999999
Q ss_pred HHhhcCCcccHHHHHHHHHHHHHHHhh
Q 006517 404 LLELTNNLLMLPLVMLVLLISKTVADS 430 (642)
Q Consensus 404 ~~Eltg~~~~l~p~~~~~~~a~~~~~~ 430 (642)
++|+|||+++++|+|+++++|+.++++
T Consensus 329 ~~Eltg~~~~~~p~lia~~~a~~v~~~ 355 (355)
T PF00654_consen 329 VLELTGDFQLLLPLLIAVAVAYLVARW 355 (355)
T ss_dssp HHHHH--GGGHHHHHHHHHHHHHHHH-
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999874
No 11
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=1.6e-58 Score=496.34 Aligned_cols=361 Identities=30% Similarity=0.513 Sum_probs=306.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHHH
Q 006517 4 VANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGAC 83 (642)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga~ 83 (642)
.+|++++..++++++++++++.|+++|+|+||+++.+++.. +.+++|+++.|++++++++++|+|+|||||++|+|++
T Consensus 38 ~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~--~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ 115 (402)
T cd01031 38 LVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLL--PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAA 115 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCC--CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHH
Confidence 34566777888999999999999999999999999999843 3567899999999999999999999999999999999
Q ss_pred HHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 006517 84 IANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAV 163 (642)
Q Consensus 84 ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va~~ 163 (642)
+|++++| ++|. ++.++|.+++||+|||++++||||++|++|++|++.++|+.+.+++.+++++++.+
T Consensus 116 ig~~~~~-----------~~~~--~~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~ 182 (402)
T cd01031 116 IGQGVSK-----------WFKT--SPEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADF 182 (402)
T ss_pred HHHHHHH-----------HhcC--CHHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 9999997 3332 56789999999999999999999999999999999998888888999998888887
Q ss_pred HHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHH
Q 006517 164 VLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVL 243 (642)
Q Consensus 164 v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~ 243 (642)
+.+. .+++++ .|.++ ....+++.|+++++++|++||++|.+|+++.++.++++++.++. ++.+
T Consensus 183 v~~~-----------~~~~~~--~~~~~-~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~---~~~~ 245 (402)
T cd01031 183 VSRL-----------FFGLGP--VLSIP-PLPALPLKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLKKL---PREL 245 (402)
T ss_pred HHHH-----------HcCCCc--eEecC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---ChhH
Confidence 7764 345554 45554 23568899999999999999999999999999999888765322 2344
Q ss_pred HHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcch
Q 006517 244 LVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEF 323 (642)
Q Consensus 244 ~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~~ 323 (642)
.+.+++++++++.++.|+. .|. +++.++..+. +++
T Consensus 246 ~~~l~gl~~~~~~~~~p~~-----------------~g~------------------------G~~~i~~~~~----~~~ 280 (402)
T cd01031 246 RVLLPGLLIGPLGLLLPEA-----------------LGG------------------------GHGLILSLAG----GNF 280 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------hCC------------------------HHHHHHHHHc----CCc
Confidence 4566777888888878876 221 1233444433 235
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcc---cCCChhHHHHHHhhhhhcccccchhhH
Q 006517 324 HLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVSL 400 (642)
Q Consensus 324 ~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~---~~~~~~~~alvG~aa~~ag~~~~pls~ 400 (642)
++..++.+++.|+++|++|+++|+|||.|+|++++||++|+++|++++.. ...+|+.|+++||+|++++++|+|+|+
T Consensus 281 ~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~~G~aa~~a~~~~aPlta 360 (402)
T cd01031 281 SISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPIPISAPATFAIAGMAAFFAAVVRAPITA 360 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 56677778889999999999999999999999999999999999998753 246899999999999999999999999
Q ss_pred hhHHHhhcCCcccHHHHHHHHHHHHHHHhhc-CchHHHHHHH
Q 006517 401 CVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVK 441 (642)
Q Consensus 401 ~vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~-~~~iy~~~l~ 441 (642)
+++++|+||++++++|+|+++++|+++++.+ ++++||.+++
T Consensus 361 ~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~ 402 (402)
T cd01031 361 IILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE 402 (402)
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence 9999999999999999999999999999998 8999999864
No 12
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.7e-58 Score=493.32 Aligned_cols=359 Identities=28% Similarity=0.406 Sum_probs=288.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCC---CCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHH
Q 006517 3 FVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGI---DAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVH 79 (642)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~---~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~ 79 (642)
|+++++.|+.++ ++.++..+++|+++||||||+++++++. +.++++++|+++.|++++++++++|+|+|||||++|
T Consensus 27 ~~~~~~~p~~~~-~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~~~~~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~ 105 (390)
T cd01034 27 WLPLLLTPAGFA-LIAWLTRRFFPGAAGSGIPQVIAALELPSAAARRRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQ 105 (390)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhCCCCCCCCHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcCCCcCCcccHHH
Confidence 334456676655 4566667799999999999999988753 245689999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHH
Q 006517 80 TGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTA 159 (642)
Q Consensus 80 iga~ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~ 159 (642)
+|+++|++++| ++++ +++++||++++||+|||+||+||||++|++|++||+.++|+.+..++.++++.
T Consensus 106 iga~i~~~~~~----~~~~--------~~~~~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~ 173 (390)
T cd01034 106 IGAAVMLAIGR----RLPK--------WGGLSERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVI 173 (390)
T ss_pred HHHHHHHHHHH----Hccc--------CchHHHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 99999999997 3332 13688999999999999999999999999999999999988888888888877
Q ss_pred HHHHHHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCC
Q 006517 160 VVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINE-RGP 238 (642)
Q Consensus 160 va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~-~~~ 238 (642)
+++++.+. ++++.+ .|.++. ...+++.++++++++|++||++|.+|++...++++++++... +.+
T Consensus 174 ~a~~~~~~-----------~~g~~~--~f~~~~-~~~~~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~ 239 (390)
T cd01034 174 AAGLVSLA-----------VLGNYP--YFGVAA-VALPLGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRRFRR 239 (390)
T ss_pred HHHHHHHH-----------HcCCCC--ccCCCC-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 77776654 344444 344442 233667889999999999999999999999999888776532 223
Q ss_pred chhHHHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccC
Q 006517 239 IFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSG 318 (642)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~ 318 (642)
.++++.+.+++++++++.++.|... .| ++++.++..+.++
T Consensus 240 ~~~~~~~~~~gl~~~~~~~~~~~~~----------------~G------------------------~G~~~i~~~~~~~ 279 (390)
T cd01034 240 RRPVLFAALCGLALALIGLVSGGLT----------------FG------------------------TGYLQARAALEGG 279 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCcc----------------cc------------------------CcHHHHHHHHhCC
Confidence 3455666777777777776654210 11 1122344443322
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcccCCChhHHHHHHhhhhhcccccchh
Q 006517 319 TSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTV 398 (642)
Q Consensus 319 ~~~~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~pl 398 (642)
. .. .+.+++.|+++|.+|+++|+|||.|.|++++||++|++++.+++ ..+|..|+++||+|++++++|+|+
T Consensus 280 ~--~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~---~~~~~~~a~~G~aA~laa~~~aPl 350 (390)
T cd01034 280 G--GL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLG---SVSQGALVLLGMAAFLAGVTQAPL 350 (390)
T ss_pred C--cc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHcccH
Confidence 1 11 12346799999999999999999999999999999999999986 358999999999999999999999
Q ss_pred hHhhHHHhhcCCcccHHHHHHHHHHHHHHHhhc-CchHHH
Q 006517 399 SLCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYD 437 (642)
Q Consensus 399 s~~vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~-~~~iy~ 437 (642)
|++++++|+||++++++|+|+++++|+++++.+ .+++||
T Consensus 351 t~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 351 TAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999999999988 788885
No 13
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-58 Score=491.81 Aligned_cols=367 Identities=32% Similarity=0.503 Sum_probs=302.0
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHH
Q 006517 4 VANTSINLGLAILAA-ILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGA 82 (642)
Q Consensus 4 ~~~~~~~~~~~~~~~-~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga 82 (642)
++.+..+..++++++ ++..++.|+++|||+||+++.+++. ++.+++|..++|++++.+++++|+|+|||||++|+|+
T Consensus 64 ~~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga 141 (443)
T COG0038 64 WLLPLVPALGGLLVGALLVYKFAPEARGSGIPQAIEALHGR--KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGA 141 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccCCChhHHHHHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHH
Confidence 344556667777777 7889999999999999999988873 5778999999999999999999999999999999999
Q ss_pred HHHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhh-hhhhhHHHHHHHHHHH
Q 006517 83 CIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASW-WRSALLWRTFFTTAVV 161 (642)
Q Consensus 83 ~ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~-~~~~~~~~~~~~~~va 161 (642)
++|+.++| ++|. ++.+||.+++||+|||+||+|||||+|++|++|++... ++.+.+++++++++++
T Consensus 142 ~~g~~~~~-----------~l~~--~~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va 208 (443)
T COG0038 142 AIGSLLGR-----------LLKL--SREDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVA 208 (443)
T ss_pred HHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 99999997 3332 57899999999999999999999999999999999987 8877777777777666
Q ss_pred HHHHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchh
Q 006517 162 AVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFK 241 (642)
Q Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~ 241 (642)
..+.+. .++.+ +.+.++. ...+++++++.++++|+++|++|.+|.++....++++++.+ ..+
T Consensus 209 ~~v~~~-----------~~~~~--~~~~~~~-~~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~~~~~~~~~----~~~ 270 (443)
T COG0038 209 LLVAGL-----------FGGPH--FLLPIVT-TPHMSLWDLLLYLVLGIIAGLFGVLLSRLLALSRRFFRRLP----LPP 270 (443)
T ss_pred HHHHHH-----------cCCCC--ceeeccc-cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----chH
Confidence 665553 22322 2444443 45678899999999999999999999999877755555433 335
Q ss_pred HHHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCc
Q 006517 242 VLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSK 321 (642)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~ 321 (642)
.+.+.+++++++++.++.|+.. |. +|+. ++.... .
T Consensus 271 ~~~~~~~g~l~g~~~l~~P~~l-----------------g~------------G~~~------------~~~~~~----~ 305 (443)
T COG0038 271 LLRPALGGLLVGALGLLFPEVL-----------------GN------------GYGL------------IQLALA----G 305 (443)
T ss_pred HHHHHHHHHHHHHHHHhchhhh-----------------CC------------CccH------------HHHHHc----c
Confidence 6677788888888899999872 21 1111 122221 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhccc---CCChhHHHHHHhhhhhcccccchh
Q 006517 322 EFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALS---DLDTGLFALLGAASFLGGTMRMTV 398 (642)
Q Consensus 322 ~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~---~~~~~~~alvG~aa~~ag~~~~pl 398 (642)
++.+..++.+++.|+++|++|+|+|+|||+|+|++++||++|.++|.+++... ...+..|+++||+|++++++|+|+
T Consensus 306 ~~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~~~~~~~~~al~Gm~a~la~~~~aPl 385 (443)
T COG0038 306 EGGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPPSILEPGLFALLGMAAFLAATTRAPL 385 (443)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHHHHhcccH
Confidence 23333256778899999999999999999999999999999999999987642 234679999999999999999999
Q ss_pred hHhhHHHhhcCCcccHHHHHHHHHHHHHHHhhc-CchHHHHHHHhcCCCcc
Q 006517 399 SLCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVKLKGLPYL 448 (642)
Q Consensus 399 s~~vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~-~~~iy~~~l~~~g~~~~ 448 (642)
|++++++||||+++.++|+|++++++|.+++.. ++++|+..+++++.+..
T Consensus 386 ta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (443)
T COG0038 386 TAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAPIL 436 (443)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcCchhh
Confidence 999999999999999999999999999999988 89999999999987743
No 14
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=1e-57 Score=494.71 Aligned_cols=364 Identities=28% Similarity=0.492 Sum_probs=299.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCc-cchHHHHHHHHHHHHhhCCcCCCchhHHHHHHHH
Q 006517 6 NTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILA-PSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACI 84 (642)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~-~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga~i 84 (642)
++.++.+++.++.+++++++|+++|||+||+++++++.+ .++ +++++.|++++++++++|+|+|||||++|+|+++
T Consensus 47 ~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~l~~~~---~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~i 123 (438)
T PRK05277 47 AFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGALEGLR---PVRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNI 123 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCC---ccchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHH
Confidence 345566777788899999999999999999999998743 234 5789999999999999999999999999999999
Q ss_pred HHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhh--hhhhhHHHHHHHHHHHH
Q 006517 85 ANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASW--WRSALLWRTFFTTAVVA 162 (642)
Q Consensus 85 g~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~--~~~~~~~~~~~~~~va~ 162 (642)
|+++++ ++++ +++.++|++++||+|||+|++||||++|++|++|++.++ |+.+.+++.+++++++.
T Consensus 124 g~~~~~----~~~~--------~~~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~ 191 (438)
T PRK05277 124 GRMVLD----IFRL--------RSDEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMAT 191 (438)
T ss_pred HHHHHH----Hccc--------CCHHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 999987 2321 156789999999999999999999999999999999874 45666788888887777
Q ss_pred HHHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhH
Q 006517 163 VVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKV 242 (642)
Q Consensus 163 ~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~ 242 (642)
.+.+.+ +++++ .|+++. ...+++.++++++++|++||++|.+|+++..++++++++++...+++.+
T Consensus 192 ~v~~~~-----------~g~~~--~~~~~~-~~~~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~ 257 (438)
T PRK05277 192 IVFRLF-----------NGEQA--VIEVGK-FSAPPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWV 257 (438)
T ss_pred HHHHHh-----------cCCCc--eEeccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 776643 34433 455542 2345678999999999999999999999999999988776543333344
Q ss_pred HHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcc
Q 006517 243 LLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKE 322 (642)
Q Consensus 243 ~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~ 322 (642)
+.+.+++++++++.++.|+. .|. +| +.+++.+.+ +
T Consensus 258 ~~~~i~gl~~g~l~~~~p~~-----------------~g~------------G~------------~~i~~~~~~----~ 292 (438)
T PRK05277 258 LMGGAVGGLCGLLGLLAPAA-----------------VGG------------GF------------NLIPIALAG----N 292 (438)
T ss_pred HHHHHHHHHHHHHHHHhhhh-----------------cCC------------hH------------HHHHHHHcC----C
Confidence 56677778888888777765 221 12 234444332 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcc---cCCChhHHHHHHhhhhhcccccchhh
Q 006517 323 FHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVS 399 (642)
Q Consensus 323 ~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~---~~~~~~~~alvG~aa~~ag~~~~pls 399 (642)
+++..++.+++.|+++|++|+|+|+|||.|.|++++||++|+++|.+++.. ...+|..|+++||+|++++++|+|+|
T Consensus 293 ~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~a~~G~aA~la~~~~aPlt 372 (438)
T PRK05277 293 FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQYHIEPGTFAIAGMGALFAATVRAPLT 372 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHHHHHHHhHHH
Confidence 455667778889999999999999999999999999999999999987653 24678999999999999999999999
Q ss_pred HhhHHHhhcCCcccHHHHHHHHHHHHHHHhhc-CchHHHHHHHhc
Q 006517 400 LCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVKLK 443 (642)
Q Consensus 400 ~~vi~~Eltg~~~~l~p~~~~~~~a~~~~~~~-~~~iy~~~l~~~ 443 (642)
++++++|+||++++++|+++++++|+.+++.+ ++++||.++++.
T Consensus 373 ~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 373 GIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT 417 (438)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999999999999 799999999875
No 15
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=9.4e-57 Score=478.25 Aligned_cols=345 Identities=23% Similarity=0.306 Sum_probs=284.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHHH
Q 006517 4 VANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGAC 83 (642)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga~ 83 (642)
+++++.+++++++++++.+++. .+|+|+||+++++++ ++++++++.+.|.+++++++++|+|+|||||++|+|++
T Consensus 40 ~~~~~~~~~ggl~~~l~~~~~~--~~g~gi~~v~~~~~~---~~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~ 114 (388)
T cd01033 40 IRRALSLTVGGLIAGLGWYLLR--RKGKKLVSIKQAVRG---KKRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGAL 114 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--ccCCCcccHHHHhcC---CCCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHH
Confidence 3455667788888777754433 469999999999987 35688999999999999999999999999999999999
Q ss_pred HHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 006517 84 IANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAV 163 (642)
Q Consensus 84 ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va~~ 163 (642)
+|++++| ++|+ ++++||++++||+|||+||+||||++|++|++|++.++++.+.+++++++++++.+
T Consensus 115 i~~~~~~----~~~~---------~~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~ 181 (388)
T cd01033 115 LAQRFSD----WLGL---------TVADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAA 181 (388)
T ss_pred HHHHHHH----HhCC---------CHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9999997 3332 67899999999999999999999999999999999999998888888888888887
Q ss_pred HHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHH
Q 006517 164 VLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVL 243 (642)
Q Consensus 164 v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~ 243 (642)
+.+. ++++++ .|+++. .++++.++++++++|++||++|.+|+++.+++++++++.+ +..+
T Consensus 182 v~~~-----------~~g~~~--~f~~~~--~~~~~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~~~-----~~~~ 241 (388)
T cd01033 182 VASL-----------LKGDHP--IYDIPP--MQLSTPLLIWALLAGPVLGVVAAGFRRLSQAARAKRPKGK-----RILW 241 (388)
T ss_pred HHHH-----------hCCCCc--eeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----chHH
Confidence 7765 345554 455552 3345788999999999999999999999999888764321 1223
Q ss_pred HHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcch
Q 006517 244 LVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEF 323 (642)
Q Consensus 244 ~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~~ 323 (642)
.+.+++++++++.++.|++ .| ++++.++.++.. +.
T Consensus 242 ~~~l~gl~~g~~~~~~p~~-----------------~G------------------------~G~~~i~~~~~~----~~ 276 (388)
T cd01033 242 QMPLAFLVIGLLSIFFPQI-----------------LG------------------------NGRALAQLAFST----TL 276 (388)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------hC------------------------CcHHHHHHHHcC----Cc
Confidence 4556777778777777876 22 112334444432 23
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcc-cCCChhHHHHHHhhhhhcccccchhhHhh
Q 006517 324 HLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL-SDLDTGLFALLGAASFLGGTMRMTVSLCV 402 (642)
Q Consensus 324 ~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~-~~~~~~~~alvG~aa~~ag~~~~pls~~v 402 (642)
+...++.+++.|+++|++|+|+|.|||.|.|++++||++|+++|++++.. ++.++..|+++||+|++++++|+|+|+++
T Consensus 277 ~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~a~~GmaA~laa~~~aPlt~iv 356 (388)
T cd01033 277 TLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPPLSIAAFALIGAAAFLAATQKAPLTALI 356 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45566777889999999999999999999999999999999999998753 35678899999999999999999999999
Q ss_pred HHHhhcC-CcccHHHHHHHHHHHHHHHhhc
Q 006517 403 ILLELTN-NLLMLPLVMLVLLISKTVADSF 431 (642)
Q Consensus 403 i~~Eltg-~~~~l~p~~~~~~~a~~~~~~~ 431 (642)
+++|+|| +++.++|+|+++++|+.+++.+
T Consensus 357 l~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 357 LVLEFTRQNPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999999999999999865
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=6e-52 Score=443.68 Aligned_cols=344 Identities=32% Similarity=0.477 Sum_probs=287.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHH
Q 006517 3 FVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGA 82 (642)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga 82 (642)
+++|.+.+++++++++++.++..| +.|+|+||+++.+++. ++.+++|+.+.|++++++++++|+|+|||||++|+|+
T Consensus 37 ~~~~~~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~~~~~~--~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa 113 (383)
T cd00400 37 PLYILLVPVIGGLLVGLLVRLLGP-ARGHGIPEVIEAIALG--GGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGA 113 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc-ccCCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Confidence 456778888888888888877666 8999999998888752 3467899999999999999999999999999999999
Q ss_pred HHHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 006517 83 CIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVA 162 (642)
Q Consensus 83 ~ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va~ 162 (642)
++|+++++ ++ +. ++.++|.+++||+|||++++||||++|++|++|++.++++.+.+++.+++++++.
T Consensus 114 ~~g~~~~~----~~-------~~--~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~ 180 (383)
T cd00400 114 AIGSWLGR----RL-------RL--SRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAA 180 (383)
T ss_pred HHHHHHHH----Hh-------CC--CHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999987 23 22 5678999999999999999999999999999999999887788888888888888
Q ss_pred HHHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhH
Q 006517 163 VVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKV 242 (642)
Q Consensus 163 ~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~ 242 (642)
.+.+.+ ++..+ .|+++. ..++++.++++++++|++||++|.+|+++.+++++++++.+ +++.
T Consensus 181 ~v~~~~-----------~~~~~--~~~~~~-~~~~~~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~~~----~~~~ 242 (383)
T cd00400 181 LVSRLL-----------FGAEP--AFGVPL-YDPLSLLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRRLP----IPPW 242 (383)
T ss_pred HHHHHH-----------cCCCC--eeeCCC-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CcHH
Confidence 777653 33333 455552 46788999999999999999999999999999998877642 2345
Q ss_pred HHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcc
Q 006517 243 LLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKE 322 (642)
Q Consensus 243 ~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~ 322 (642)
+.+.+++++++++.++.|+.. |. +|+ .++..+. .+
T Consensus 243 ~~~~i~gll~~~~~~~~p~~~-----------------g~------------G~~------------~~~~~~~----~~ 277 (383)
T cd00400 243 LRPALGGLLLGLLGLFLPQVL-----------------GS------------GYG------------AILLALA----GE 277 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------cC------------cHH------------HHHHHHc----CC
Confidence 667777888888888888762 21 111 1222222 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcc---cCCChhHHHHHHhhhhhcccccchhh
Q 006517 323 FHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVS 399 (642)
Q Consensus 323 ~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~---~~~~~~~~alvG~aa~~ag~~~~pls 399 (642)
+++..++.+++.|+++|++|+++|+|||.|+|++++||++|+++|++++.. ...++..|+++||+|++++++|+|+|
T Consensus 278 ~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~~~~~~~~~~~~G~aa~la~~~~aPlt 357 (383)
T cd00400 278 LSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPGLVASPGAYALVGMAALLAAVLRAPLT 357 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHHhCchHH
Confidence 455566778889999999999999999999999999999999999999752 34689999999999999999999999
Q ss_pred HhhHHHhhcCCcccHHHHHHHHHHHH
Q 006517 400 LCVILLELTNNLLMLPLVMLVLLISK 425 (642)
Q Consensus 400 ~~vi~~Eltg~~~~l~p~~~~~~~a~ 425 (642)
++++++|+||+++.++|+++++++||
T Consensus 358 ~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 358 AILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 99999999999999999999999875
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.4e-49 Score=422.71 Aligned_cols=341 Identities=22% Similarity=0.326 Sum_probs=265.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHHHHHHH
Q 006517 8 SINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANL 87 (642)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga~ig~~ 87 (642)
.++++ +++.+++.+++.|. .|+|+||+++.+++. ++.+++|..+.|++++.+++++|+|+|||||++|+|+++|++
T Consensus 36 ~~p~~-g~~i~~l~~~~~~~-~~~g~~~v~~~~~~~--~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~ 111 (378)
T cd03682 36 FLPLA-GLLIGYLYQKFGKN-SEKGNNLIIEEIHGP--EEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADA 111 (378)
T ss_pred HHHHH-HHHHHHHHHHhCcc-cCCChHHHHHHHHcc--CCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHH
Confidence 33444 45556888877666 568999998877752 456889999999999999999999999999999999999999
Q ss_pred hhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHh-hhhhhhhHHHHHHHHHHHHHHHH
Q 006517 88 LGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAA-SWWRSALLWRTFFTTAVVAVVLR 166 (642)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~-~~~~~~~~~~~~~~~~va~~v~~ 166 (642)
+++ ++|+ +++++|.+++||+|||++|+||||++|++|++|++. ++++.+.+++.++++.++..+.+
T Consensus 112 ~~~----~~~~---------~~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~ 178 (378)
T cd03682 112 FGR----VFKL---------PEEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSH 178 (378)
T ss_pred HHH----HhCC---------CHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 997 3332 456889999999999999999999999999999996 56666666777777766666554
Q ss_pred HHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHH
Q 006517 167 GFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVA 246 (642)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (642)
.+ +.++ ..|.++. .+++++.++++++++|++||++|.+|+++.++.++++++..+ .+++.+.
T Consensus 179 ~~------------~~~~-~~~~~~~-~~~~~~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~~~----~~~~~~~ 240 (378)
T cd03682 179 AL------------GLEH-THYHIVF-IPTLDPLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKRIK----NPYLRPF 240 (378)
T ss_pred Hh------------CCCC-CccccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CcHHHHH
Confidence 32 1111 1244432 356788999999999999999999999999999988875432 2334556
Q ss_pred HHHHHhhhhhccccccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHh-hhccCCCcchhH
Q 006517 247 AVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRN-LFSSGTSKEFHL 325 (642)
Q Consensus 247 ~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~-~~~~~~~~~~~~ 325 (642)
+.+++++++.++.|.-. ..|. +|+ .++. ++.+ +.+.
T Consensus 241 iggl~~g~~~~~~~~~~---------------~~G~------------g~~------------~i~~~~~~~----~~~~ 277 (378)
T cd03682 241 VGGLLIILLVYLLGSRR---------------YLGL------------GTP------------LIEDSFFGG----TVYP 277 (378)
T ss_pred HHHHHHHHHHHHhcCCc---------------cccC------------CHH------------HHHHHHhcC----CchH
Confidence 66777777665543210 0111 122 2322 2221 2221
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcccCCChhHHHHHHhhhhhcccccchhhHhhHHH
Q 006517 326 STLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILL 405 (642)
Q Consensus 326 ~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~ 405 (642)
..++.|+++|++|+|+|+|||.|+|++++||++|++++++++ .++..|+++||+|++++++|+|+|++++++
T Consensus 278 ----~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~----~~~~~~~~~Gmaa~laa~~raPlt~ivl~~ 349 (378)
T cd03682 278 ----YDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG----LPVSLLAALGFVAVFAGATNTPLACIIMGI 349 (378)
T ss_pred ----HHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 234689999999999999999999999999999999999984 578899999999999999999999999999
Q ss_pred hhcCCcccHHHHHHHHHHHHHHHhhcCchHHH
Q 006517 406 ELTNNLLMLPLVMLVLLISKTVADSFNQGVYD 437 (642)
Q Consensus 406 Eltg~~~~l~p~~~~~~~a~~~~~~~~~~iy~ 437 (642)
|+|| ++.++|+|+++++|+.+++ ++++|+
T Consensus 350 Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~ 378 (378)
T cd03682 350 ELFG-AENAPYFFIACLVAYLFSG--HTGIYG 378 (378)
T ss_pred HHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence 9999 5788899999999999997 678874
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=2.5e-47 Score=405.95 Aligned_cols=336 Identities=15% Similarity=0.216 Sum_probs=251.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHHH
Q 006517 4 VANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGAC 83 (642)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga~ 83 (642)
+|.+..+.+++++++++.+ +.|...|+ .|+++....+ .++.+..+.|++++++++++|+|+|||||+||+|++
T Consensus 57 ~~~~~~~~~gGllvgll~~-~~~~~~G~-~~~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~ 129 (414)
T PRK03655 57 LWIIGMLTLTGIAVGLVIR-FSPGHAGP-DPATEPLIGA-----PVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIA 129 (414)
T ss_pred hHHHHHHHHHHHHHHHHHH-HcCCCCCC-hHHHHHHhcC-----CCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 3445667788899899875 55776677 5777666432 466789999999999999999999999999999999
Q ss_pred HHHHhhccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 006517 84 IANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAV 163 (642)
Q Consensus 84 ig~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va~~ 163 (642)
++++++| +++ ++.++|+++.||+|||+||+||||++|++|++||+.+++..+. |...++++++++
T Consensus 130 igs~~~r-----------~~~---~~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~-~~~~~~~v~aa~ 194 (414)
T PRK03655 130 LAVAIGA-----------RLL---PRVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEVPL-WDRLFAPLMAAA 194 (414)
T ss_pred HHHHHHH-----------Hhc---cCCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHH
Confidence 9999997 221 2346777899999999999999999999999999988776422 223333333333
Q ss_pred HHHHHHHHhhCCcccccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHH
Q 006517 164 VLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVL 243 (642)
Q Consensus 164 v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~ 243 (642)
+...+.. ..+ ++.+.++++. ....+..++++++++|++||++|.+|++...+.++++++++. + .+
T Consensus 195 ~a~~v~~-------~~~--~~~~~~~~~~-~~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~~~--p---~~ 259 (414)
T PRK03655 195 AGALTTG-------LFF--HPHFSLPIAH-YGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMHRLKN--P---VL 259 (414)
T ss_pred HHHHHHH-------HhC--CCCcceecCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c---hH
Confidence 3222211 112 2323344442 344677899999999999999999999999888887765432 2 23
Q ss_pred HHHHHHHHhhhhhccc-cccccccCCCCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcc
Q 006517 244 LVAAVSLLTSCCSYGL-PWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKE 322 (642)
Q Consensus 244 ~~~~~~l~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~ 322 (642)
...++|+++++++++. |++ .| .+|+ .++++... .+
T Consensus 260 ~~~lgGl~vg~l~l~~~~~~-----------------~g------------~Gy~------------~i~~~~~~---~~ 295 (414)
T PRK03655 260 VLGIGGFILGILGVIGGPLT-----------------LF------------KGLD------------EMQQMAAN---QA 295 (414)
T ss_pred HHHHHHHHHHHHHHHhCCcc-----------------cc------------CCHH------------HHHHHHhc---CC
Confidence 3456667777776653 322 11 1233 34433321 24
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcccCCChhHHHHHHhhhhhccccc----chh
Q 006517 323 FHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMR----MTV 398 (642)
Q Consensus 323 ~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~----~pl 398 (642)
+++..++++.+.|+++|++|+++|+|||+|+|+|++||++|..++.+++ ..++...+++||+|++++++| +|+
T Consensus 296 ~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l~p---~~~~~~~v~~~m~a~la~vtr~p~~sp~ 372 (414)
T PRK03655 296 FSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAHVP---AVPAAITVSCAILGIVLVVTRDGWLSLF 372 (414)
T ss_pred ccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHhcc---CCChHHHHHHHHHHHHHHHhccchhhHH
Confidence 5666777788999999999999999999999999999999999999985 467888999999999999999 699
Q ss_pred hHhhHHHhhcCCcccHHHHHHHHHHHHHHH
Q 006517 399 SLCVILLELTNNLLMLPLVMLVLLISKTVA 428 (642)
Q Consensus 399 s~~vi~~Eltg~~~~l~p~~~~~~~a~~~~ 428 (642)
|++++++||| +.|+|++++++.++.
T Consensus 373 ta~viv~em~-----~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 373 MAAVVVPDTT-----LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHHHHhcch-----HHHHHHHHHHHHHHH
Confidence 9999999999 777787777776654
No 19
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.71 E-value=2.2e-16 Score=152.36 Aligned_cols=137 Identities=23% Similarity=0.303 Sum_probs=114.1
Q ss_pred cccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcc
Q 006517 456 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 535 (642)
Q Consensus 456 l~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~ 535 (642)
...++..|||+++++++++++++.++.+.|++++.+.+||+|++ .+++|+|+.+|+.+.....-+
T Consensus 242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-----~rl~GiVt~~dl~~~a~~~p~---------- 306 (382)
T COG3448 242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-----RRLVGIVTQRDLLKHARPSPF---------- 306 (382)
T ss_pred hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccc-----cceeeeeeHHHHhhccCcchH----------
Confidence 45678899999999999999999999999999999999999998 899999999999752211000
Q ss_pred cccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCC
Q 006517 536 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 615 (642)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~ 615 (642)
.. -.++ ....++.+|++...++.+|++..|.+.+|.+.+.+++||+|+ +|+
T Consensus 307 --qr---lr~~---------------------~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~---~g~ 357 (382)
T COG3448 307 --QR---LRFL---------------------RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA---AGK 357 (382)
T ss_pred --HH---hhcc---------------------CCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC---CCc
Confidence 00 0000 123467899999999999999999999999999999999998 899
Q ss_pred eEEEEehhhcchhHhhccCcc
Q 006517 616 IVGILTRHDFMPEHVLGLYPH 636 (642)
Q Consensus 616 lvGIITr~Dll~~~~~~~~~~ 636 (642)
++||||..|++....++...+
T Consensus 358 lvGIvsQtDliaal~r~~~~~ 378 (382)
T COG3448 358 LVGIVSQTDLIAALYRNWSQH 378 (382)
T ss_pred EEEEeeHHHHHHHHHHHHHHh
Confidence 999999999998887765443
No 20
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.70 E-value=7.7e-17 Score=153.05 Aligned_cols=123 Identities=18% Similarity=0.237 Sum_probs=112.3
Q ss_pred ccccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCc
Q 006517 455 YMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGS 534 (642)
Q Consensus 455 ~l~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~ 534 (642)
...+.+|+++|++++.++++++|++|+..+|.++++++.||+|+ ++++|++|.+|+.+++.+...
T Consensus 168 siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~------dk~vGiit~~dI~~aia~g~~--------- 232 (294)
T COG2524 168 SIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD------DKIVGIITLSDIAKAIANGNL--------- 232 (294)
T ss_pred ecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC------CceEEEEEHHHHHHHHHcCCc---------
Confidence 35678999999999999999999999999999999999999998 699999999999988876321
Q ss_pred ccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCC
Q 006517 535 DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRP 614 (642)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g 614 (642)
...++++|.++++++++|+.+.||+++|.++++.++.|+|. +|
T Consensus 233 ----------------------------------~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds---~g 275 (294)
T COG2524 233 ----------------------------------DAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS---NG 275 (294)
T ss_pred ----------------------------------cccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc---CC
Confidence 24578899999999999999999999999999999999998 89
Q ss_pred CeEEEEehhhcchhH
Q 006517 615 PIVGILTRHDFMPEH 629 (642)
Q Consensus 615 ~lvGIITr~Dll~~~ 629 (642)
+.+|+|||.|+++..
T Consensus 276 kpvGiITrTDIL~~i 290 (294)
T COG2524 276 KPVGIITRTDILTRI 290 (294)
T ss_pred cEEEEEehHHHHHHh
Confidence 999999999999754
No 21
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.64 E-value=1.3e-15 Score=159.54 Aligned_cols=147 Identities=13% Similarity=0.120 Sum_probs=125.5
Q ss_pred CchHHHHHHHhcCCCc---cccccccccc---cccccccccCC--eEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCC
Q 006517 432 NQGVYDQIVKLKGLPY---LEAHAEPYMK---NLVASDVVSGP--LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTP 503 (642)
Q Consensus 432 ~~~iy~~~l~~~g~~~---~~~~~~~~l~---~~~V~diM~~~--~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~ 503 (642)
..++|...+.++|... ...++...+. ..+|+|+|+++ +.++++++++.++.+.|.+++...+||+|++
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~---- 239 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ---- 239 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC----
Confidence 4688999998888766 5566677788 89999999998 9999999999999999988888999999987
Q ss_pred CCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCcee
Q 006517 504 APELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTV 583 (642)
Q Consensus 504 ~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v 583 (642)
++++|+|+.+|+.+.+.+... ...+++++|++++.++
T Consensus 240 -g~~iG~vt~~dl~~~~~~~~~------------------------------------------~~~~v~~im~~~~~~v 276 (321)
T PRK11543 240 -QQVQGVFTDGDLRRWLVGGGA------------------------------------------LTTPVNEAMTRGGTTL 276 (321)
T ss_pred -CcEEEEecHHHHHHHHhCCCC------------------------------------------cCCcHHHhcCCCCEEE
Confidence 899999999999875532110 0123567888889999
Q ss_pred cCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchh
Q 006517 584 VETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 628 (642)
Q Consensus 584 ~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~ 628 (642)
.+++++.++++.|.+++.+++||+|+ +++++|+||++|+++.
T Consensus 277 ~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 277 QAQSRAIDAKEILMKRKITAAPVVDE---NGKLTGAINLQDFYQA 318 (321)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEHHHHHhc
Confidence 99999999999999999999999997 6899999999999863
No 22
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.64 E-value=1.7e-15 Score=158.93 Aligned_cols=147 Identities=12% Similarity=0.137 Sum_probs=123.5
Q ss_pred CchHHHHHHHhcCCCc---ccccccccc---ccccccccccC--CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCC
Q 006517 432 NQGVYDQIVKLKGLPY---LEAHAEPYM---KNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTP 503 (642)
Q Consensus 432 ~~~iy~~~l~~~g~~~---~~~~~~~~l---~~~~V~diM~~--~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~ 503 (642)
..++|...+.++|... ...++...+ ..++|+|+|++ ++.++++++++.++.+.|.+++++.+||+|++
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~---- 244 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN---- 244 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC----
Confidence 5688999999998876 555666667 88999999997 89999999999999999988888777888876
Q ss_pred CCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCcee
Q 006517 504 APELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTV 583 (642)
Q Consensus 504 ~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v 583 (642)
++++|+|+.+|+.+....... ....+++++|++++.++
T Consensus 245 -g~lvGivt~~Dl~~~~~~~~~-----------------------------------------~~~~~v~~im~~~~~~v 282 (326)
T PRK10892 245 -MKIEGIFTDGDLRRVFDMGID-----------------------------------------LRQASIADVMTPGGIRV 282 (326)
T ss_pred -CcEEEEEecHHHHHHHhcCCC-----------------------------------------cccCCHHHhcCCCCEEE
Confidence 899999999999875432100 00134677898999999
Q ss_pred cCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchh
Q 006517 584 VETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 628 (642)
Q Consensus 584 ~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~ 628 (642)
++++++.+++++|.+++.+++||+| +++++|+||++|+++.
T Consensus 283 ~~~~~l~~a~~~m~~~~~~~lpVv~----~~~lvGiit~~dil~~ 323 (326)
T PRK10892 283 RPGILAVDALNLMQSRHITSVLVAD----GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CCCCCHHHHHHHHHHCCCcEEEEee----CCEEEEEEEhHHhHhc
Confidence 9999999999999999999999998 5789999999999864
No 23
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.58 E-value=1.9e-14 Score=162.12 Aligned_cols=185 Identities=14% Similarity=0.102 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhccCCchhHHHHHHHHHHhhhhhccccccccccCCCCCC
Q 006517 201 DLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSI--------INERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYL 272 (642)
Q Consensus 201 ~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~ 272 (642)
.+...+++|+++|+++.+|.++.++..+++.. ....++++.++.+++++++++++.+......
T Consensus 24 ~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~--------- 94 (574)
T PRK01862 24 MLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGA--------- 94 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 44567899999999999999999988877532 1112223345556666677666544322110
Q ss_pred cCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006517 273 EADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLF 352 (642)
Q Consensus 273 ~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f 352 (642)
.++ +..+.++....+. ...++.. ...|++.+.+|+|+|.|.|..
T Consensus 95 -------~~~-----------------------g~~~~~~~~~~~~--~~~~~~~----~~~k~~~~~l~i~~G~s~G~E 138 (574)
T PRK01862 95 -------RKG-----------------------GKTDYMEAVALGD--GVVPVRQ----SLWRSASSLLTIGSGGSIGRE 138 (574)
T ss_pred -------ccC-----------------------CcHHHHHHHHcCC--CCCChHH----HHHHHHHHHHHHHcCCCcCCc
Confidence 000 0112233322211 1233322 235999999999999999999
Q ss_pred hhHHHHHHHHhhHHHHhhhcccCCChhHHHHHHhhhhhcccccchhhHhhHHHhhc-CCcc--cHHHHHHHHHHHHHHHh
Q 006517 353 IPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELT-NNLL--MLPLVMLVLLISKTVAD 429 (642)
Q Consensus 353 ~P~l~iGA~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~Elt-g~~~--~l~p~~~~~~~a~~~~~ 429 (642)
.|+..+||++|..++++++.. ..+......+|+||.+|++.++|++++++.+|.. +++. .+.|.++++++|+.+++
T Consensus 139 gP~v~~ga~~~~~~~~~~~~~-~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~ 217 (574)
T PRK01862 139 GPMVQLAALAASLVGRFAHFD-PPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMR 217 (574)
T ss_pred chHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998521 2234567889999999999999999999999975 6664 58889999999999998
Q ss_pred hc
Q 006517 430 SF 431 (642)
Q Consensus 430 ~~ 431 (642)
.+
T Consensus 218 ~~ 219 (574)
T PRK01862 218 EF 219 (574)
T ss_pred HH
Confidence 76
No 24
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.57 E-value=1.7e-14 Score=127.11 Aligned_cols=122 Identities=19% Similarity=0.314 Sum_probs=103.6
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCccc
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDI 536 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~ 536 (642)
..++++++|+.+++.+++++++.++.++|++++++++||+++ ++++|-||.+++.+++.++. .
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------~k~VGsItE~~iv~~~le~~-e---------- 125 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE------DKVVGSITENDIVRALLEGM-E---------- 125 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC------CeeeeeecHHHHHHHHhccc-c----------
Confidence 468999999999999999999999999999999999999998 79999999999998776531 0
Q ss_pred ccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCe
Q 006517 537 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 616 (642)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~l 616 (642)
.++ ...++++|..+..+|++|++++.+.+++..++ .+.|++ +|++
T Consensus 126 ------------------~i~-----------~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e----~G~~ 170 (187)
T COG3620 126 ------------------SIR-----------SLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVE----NGKV 170 (187)
T ss_pred ------------------chh-----------hhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe----CCce
Confidence 000 13467889888899999999999999998764 477775 7999
Q ss_pred EEEEehhhcchhHh
Q 006517 617 VGILTRHDFMPEHV 630 (642)
Q Consensus 617 vGIITr~Dll~~~~ 630 (642)
+||||+.|+++...
T Consensus 171 vGIITk~DI~k~~~ 184 (187)
T COG3620 171 VGIITKADIMKLLA 184 (187)
T ss_pred EEEEeHHHHHHHHh
Confidence 99999999997543
No 25
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.54 E-value=6.8e-14 Score=150.04 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-------ccCCchhHHHHHHHHHHhhhhhccccccccccCCCCCCcCCCCCCCC
Q 006517 209 GVIGGIFGSFYNYLVDKVLRTYSIIN-------ERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVG 281 (642)
Q Consensus 209 gi~~gl~g~~f~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g 281 (642)
|+++|+++.+|.++..+.++++.+.. ..++++..+.+++.+++++++....|.. .|
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~-----------------~g 63 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPA-----------------RG 63 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcc-----------------cC
Confidence 68999999999999999998876542 1223445566677777777665544321 11
Q ss_pred CCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHH
Q 006517 282 RSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGAS 361 (642)
Q Consensus 282 ~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~ 361 (642)
. +++++ ....... ....+ .-..+.|++.+.+|+++|.|+|.+.|++.+||+
T Consensus 64 ~------------G~~~v------------~~~~~~~-~~~~~----~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~ 114 (383)
T cd00400 64 H------------GIPEV------------IEAIALG-GGRLP----LRVALVKFLASALTLGSGGSVGREGPIVQIGAA 114 (383)
T ss_pred C------------ChHHH------------HHHHHhC-CCCCC----HHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Confidence 1 12221 1111111 11112 223458999999999999999999999999999
Q ss_pred HhhHHHHhhhcccCCChhHHHHHHhhhhhcccccchhhHhhHHHhhcCCcc---cHHHHHHHHHHHHHHHhhc
Q 006517 362 YGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLL---MLPLVMLVLLISKTVADSF 431 (642)
Q Consensus 362 ~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~Eltg~~~---~l~p~~~~~~~a~~~~~~~ 431 (642)
+|..+++.++. ...+...++.+||+|.++++.|+|++++++.+|++++.. .+.|.++++++++.+++.+
T Consensus 115 ~g~~~~~~~~~-~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~ 186 (383)
T cd00400 115 IGSWLGRRLRL-SRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLL 186 (383)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998853 123566899999999999999999999999999997654 6899999999999999876
No 26
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.51 E-value=2.5e-14 Score=141.64 Aligned_cols=148 Identities=21% Similarity=0.290 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCccccccccccccccccccccC--CeEEecCcccHHHHHHHHhhCCCCc
Q 006517 415 PLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNG 492 (642)
Q Consensus 415 ~p~~~~~~~a~~~~~~~~~~iy~~~l~~~g~~~~~~~~~~~l~~~~V~diM~~--~~~~v~~~~tv~~~~~~l~~~~~~~ 492 (642)
+|++-++-=.+.++..+++-+|+.+.+. +-++|.|+|+| +..++.+++++++..++-.+++|+.
T Consensus 158 lPvlstsYDTFTVAtmIN~Al~n~lIKk--------------dI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sR 223 (432)
T COG4109 158 LPVLSTSYDTFTVATMINKALSNQLIKK--------------DIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSR 223 (432)
T ss_pred CceEEecccceeHHHHHHHHHHHhhhhh--------------heeeHHHhccccccceeccccccHHHHHHHHHHcCCCc
Confidence 4555554445555655567777766653 23689999995 7889999999999999999999999
Q ss_pred eeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcccCCCCCccccccccchhhhhccccc
Q 006517 493 FPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDL 572 (642)
Q Consensus 493 ~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 572 (642)
|||+|+. .+++|+|+.+|+.... ...++
T Consensus 224 fPVvn~~-----~kvvGvVt~rDv~~~~-----------------------------------------------~~t~i 251 (432)
T COG4109 224 FPVVNRS-----MKVVGVVTMRDVLDKK-----------------------------------------------PSTTI 251 (432)
T ss_pred cceeccc-----ceEEEEEEehhhhcCC-----------------------------------------------CCccH
Confidence 9999987 9999999999986310 12456
Q ss_pred ccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhh
Q 006517 573 HPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 631 (642)
Q Consensus 573 ~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~ 631 (642)
..+|+++|+++.+.+++..+.+.|--.+++-+||+|+ +.+++|+|||+|+++.+..
T Consensus 252 eKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~---n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 252 EKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS---NNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred HHHhccCCeeecccchHHHHHHHHHhccceeeeEEcC---CceEEEEEEHHHHHHHHHH
Confidence 7799999999999999999999999999999999998 8999999999999987664
No 27
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.51 E-value=6.5e-14 Score=151.72 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=117.2
Q ss_pred chHHHHHHHhcCCCcc-----ccccccccccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeE
Q 006517 433 QGVYDQIVKLKGLPYL-----EAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPEL 507 (642)
Q Consensus 433 ~~iy~~~l~~~g~~~~-----~~~~~~~l~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~l 507 (642)
..++..+.++.|+-+. .....+.++.++++++|.+++.+++++++++++.+.|.+++++.+||+|++ +++
T Consensus 58 ~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-----gkl 132 (479)
T PRK07807 58 RRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-----GRP 132 (479)
T ss_pred HHHHHHHHHCCCceEeeCCCCHHHHHHHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-----CeE
Confidence 3455555544433222 222334578899999999999999999999999999999999999999987 899
Q ss_pred EEEEeHHHHHHHHhccccccccccCCcccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCC
Q 006517 508 CGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETM 587 (642)
Q Consensus 508 vGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~ 587 (642)
+|+|+.+|+... + ...+++++|++++.++++++
T Consensus 133 vGIVT~rDL~~~--~---------------------------------------------~~~~V~diMt~~~itV~~d~ 165 (479)
T PRK07807 133 VGVVTEADCAGV--D---------------------------------------------RFTQVRDVMSTDLVTLPAGT 165 (479)
T ss_pred EEEEeHHHHhcC--c---------------------------------------------cCCCHHHhccCCceEECCCC
Confidence 999999998421 0 01235678889999999999
Q ss_pred CHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhhc
Q 006517 588 SLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLG 632 (642)
Q Consensus 588 ~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~~ 632 (642)
+++|++++|.+++.+++||+|+ +++++|+||++||++.....
T Consensus 166 sL~eAl~lM~~~~i~~LPVVD~---~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 166 DPREAFDLLEAARVKLAPVVDA---DGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred cHHHHHHHHHhcCCCEEEEEcC---CCeEEEEEEHHHHHHHhhCC
Confidence 9999999999999999999997 78999999999999865543
No 28
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=2.1e-13 Score=121.05 Aligned_cols=119 Identities=15% Similarity=0.179 Sum_probs=93.3
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+...+.+++..... .
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-----~~~~Giv~~~dl~~~~~~~~~~~~~-------------~--- 59 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDEN-----GKVVDVYSRFDVINLAKEGAYNNLD-------------L--- 59 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-----CeEEEEEeHHHHHHHHhcCcccccc-------------C---
Confidence 357889999999999999999999999999986 8999999999999765432210000 0
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
.+. ......+.|..++.++++++++.+++++|.+.+.+.+||+|+ +|+++|+||++|++
T Consensus 60 --------~~~----------~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~~~~Givt~~di~ 118 (120)
T cd04641 60 --------TVG----------EALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE---NKRVEGIISLSDIL 118 (120)
T ss_pred --------CHH----------HHHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC---CCCEEEEEEHHHhh
Confidence 000 001123345566789999999999999999999999999997 68999999999998
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 119 ~ 119 (120)
T cd04641 119 Q 119 (120)
T ss_pred c
Confidence 5
No 29
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.49 E-value=2.6e-13 Score=145.47 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHHHHHHHhhc
Q 006517 11 LGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQ 90 (642)
Q Consensus 11 ~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga~ig~~~~~ 90 (642)
.+.+++.+.+..++.|+..|+|.++++..+++. ..+++..++.|++.+.+++++|.+.|+|+|++++|+++|+.+++
T Consensus 247 ~~~gl~~~~~~~~~~~~~~G~G~~~i~~~~~~~---~~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~ 323 (390)
T cd01034 247 ALCGLALALIGLVSGGLTFGTGYLQARAALEGG---GGLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAA 323 (390)
T ss_pred HHHHHHHHHHHHhCCCccccCcHHHHHHHHhCC---CcccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHH
Confidence 334444444444445678899999999888762 24567788999999999999999999999999999999999986
Q ss_pred cCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 006517 91 GGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLR 166 (642)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va~~v~~ 166 (642)
+++ ..+.+.++.+|+||++|+++|+|+++++|++|++.. ...+.+.++++++|..+.+
T Consensus 324 -----------~~~----~~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~---~~~l~p~lia~~~A~~v~~ 381 (390)
T cd01034 324 -----------LLG----SVSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGD---QQMLLPLLAAALLASGVSR 381 (390)
T ss_pred -----------Hhc----CCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHH
Confidence 222 246789999999999999999999999999999963 2344555566555555444
No 30
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.49 E-value=2.1e-13 Score=146.96 Aligned_cols=177 Identities=16% Similarity=0.221 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc---CCchh---HHHHHHHHHHhhhhh-ccccccccccCCCCCCcCCCCCCC
Q 006517 208 LGVIGGIFGSFYNYLVDKVLRTYSIINER---GPIFK---VLLVAAVSLLTSCCS-YGLPWLSHCIPCPSYLEADRCPTV 280 (642)
Q Consensus 208 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~ 280 (642)
+|+++|+++.+|.++.++.++++...... .+.+. .+.+.+++++.+.+. ++.|+. .
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~-----------------~ 63 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLVKKFAPEA-----------------K 63 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----------------C
Confidence 47899999999999999998887543321 11111 223344445544433 224433 1
Q ss_pred CCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHH
Q 006517 281 GRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGA 360 (642)
Q Consensus 281 g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA 360 (642)
|. ++++ ++..+++.. .... .-.++.|++.+.+|+|+|.|+|.+.|++.+||
T Consensus 64 g~------------G~~~------------v~~~l~~~~-~~~~----~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga 114 (402)
T cd01031 64 GS------------GIPQ------------VEGVLAGLL-PPNW----WRVLPVKFVGGVLALGSGLSLGREGPSVQIGA 114 (402)
T ss_pred CC------------CHHH------------HHHHHcCCC-Cccc----HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHH
Confidence 11 1222 333333221 1111 22456899999999999999999999999999
Q ss_pred HHhhHHHHhhhcccCCChhHHHHHHhhhhhcccccchhhHhhHHHh-hcCCcc--cHHHHHHHHHHHHHHHhhc
Q 006517 361 SYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLE-LTNNLL--MLPLVMLVLLISKTVADSF 431 (642)
Q Consensus 361 ~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~E-ltg~~~--~l~p~~~~~~~a~~~~~~~ 431 (642)
++|..+++.++.. ..+...+..+||+|.++++.|+|++++++.+| ++++++ .+.|+++++++|+.+++.+
T Consensus 115 ~ig~~~~~~~~~~-~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 187 (402)
T cd01031 115 AIGQGVSKWFKTS-PEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF 187 (402)
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988632 23467799999999999999999999999999 778765 6999999999999999865
No 31
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.49 E-value=1.4e-13 Score=147.13 Aligned_cols=143 Identities=22% Similarity=0.230 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHhcCccCCCHHHHHHHHhCCCCCCCCccchHHHHHHHHHHHHhhCCcCCCchhHHHHHHHHHHHhh
Q 006517 10 NLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLG 89 (642)
Q Consensus 10 ~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga~ig~~~~ 89 (642)
+.+++++.+.+ .++.|+..|+|.+.+...+++......+ +..++.|++++.+++++|++.|.|+|++++|+++|+.++
T Consensus 243 ~~l~gl~~g~~-~~~~p~~~G~G~~~i~~~~~~~~~~~~l-l~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g 320 (388)
T cd01033 243 MPLAFLVIGLL-SIFFPQILGNGRALAQLAFSTTLTLSLL-LILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLG 320 (388)
T ss_pred HHHHHHHHHHH-HHHHHHHhCCcHHHHHHHHcCCchHHHH-HHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHH
Confidence 34445555554 4578999999999988888763222222 567899999999999999999999999999999999999
Q ss_pred ccCccccchhhhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 006517 90 QGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRG 167 (642)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~va~~v~~~ 167 (642)
+ .+ +.+.++.+.+.++.||+||.+|+++||||++++|++|++.. +...+.+.+++++++..+.+.
T Consensus 321 ~----~~-------~~~~p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~--~~~~l~Pl~ia~~~a~~vs~~ 385 (388)
T cd01033 321 I----VW-------NALLPPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQ--NPLFLIPLMLAVAGAVAVSRF 385 (388)
T ss_pred H----HH-------HHhCCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 7 22 21112345678999999999999999999999999998652 245566777777777777664
No 32
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=2.9e-13 Score=119.10 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=94.1
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
.+.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+.+.+.....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----g~~~G~vt~~dl~~~~~~~~~---------------------- 54 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-----GKLAGVLTKTDVVRQMGRCGG---------------------- 54 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-----CCEEEEEehHHHHHHHhhcCC----------------------
Confidence 36788999999999999999999999999987 899999999999865432100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
.....+++++|++++.+++++++++++++.|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 55 ------------------~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 55 ------------------PGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE---NARPLGVLNARDALK 113 (114)
T ss_pred ------------------CcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC---CCcEEEEEEhHhhcc
Confidence 00012356678888899999999999999999999999999997 789999999999985
No 33
>PRK05277 chloride channel protein; Provisional
Probab=99.48 E-value=6.7e-13 Score=144.54 Aligned_cols=183 Identities=16% Similarity=0.194 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCCchhHHHHHHHHHHhhhhh-----ccccccccccCCCCCCcC
Q 006517 203 LAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINE---RGPIFKVLLVAAVSLLTSCCS-----YGLPWLSHCIPCPSYLEA 274 (642)
Q Consensus 203 ~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~-----~~~p~~~~~~~~~~~~~~ 274 (642)
.+.+++|+++|+++.+|.++.+++++++..... ..++..+...++++.+.+++. .+.|..
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~------------ 69 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEA------------ 69 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCccc------------
Confidence 467899999999999999999999888754321 111222222222222222222 122322
Q ss_pred CCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCcccchh
Q 006517 275 DRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIP 354 (642)
Q Consensus 275 ~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P 354 (642)
.| + ++++ ++..+++.. .... .-.+..|++.+.+|+|+|.|+|.+.|
T Consensus 70 -----~G-s-----------Gi~~------------i~~~l~~~~--~~~~---~~~~~~k~~~~~l~~gsG~s~G~EgP 115 (438)
T PRK05277 70 -----GG-S-----------GIPE------------IEGALEGLR--PVRW---WRVLPVKFFGGLGTLGSGMVLGREGP 115 (438)
T ss_pred -----CC-C-----------CHHH------------HHHHHcCCC--ccch---HHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 11 1 1222 333333211 1111 11235799999999999999999999
Q ss_pred HHHHHHHHhhHHHHhhhcccCCChhHHHHHHhhhhhcccccchhhHhhHHHh-hcCCc--c--cHHHHHHHHHHHHHHHh
Q 006517 355 VILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLE-LTNNL--L--MLPLVMLVLLISKTVAD 429 (642)
Q Consensus 355 ~l~iGA~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~E-ltg~~--~--~l~p~~~~~~~a~~~~~ 429 (642)
++.+||++|..+++.++.....+...+..+||+|.++++.++|++++++.+| +++++ + .+.|+++++++|+.+.+
T Consensus 116 ~v~iGa~ig~~~~~~~~~~~~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~ 195 (438)
T PRK05277 116 TVQMGGNIGRMVLDIFRLRSDEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFR 195 (438)
T ss_pred HHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998631223566799999999999999999999999999 66643 3 37889999999999998
Q ss_pred hc
Q 006517 430 SF 431 (642)
Q Consensus 430 ~~ 431 (642)
.+
T Consensus 196 ~~ 197 (438)
T PRK05277 196 LF 197 (438)
T ss_pred Hh
Confidence 76
No 34
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=4e-13 Score=117.59 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=91.8
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++..|+.+...+.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~dl~~~~~~~~----------------------- 53 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-----NKVLGQVTLSDLLEIGPNDY----------------------- 53 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----CCEEEEEEHHHHHhhccccc-----------------------
Confidence 46788999999999999998888999999987 89999999999975321100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
...+++++|..++.++++++++.+++++|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 54 --------------------~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~---~~~~~Giit~~di~~ 110 (111)
T cd04603 54 --------------------ETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK---EGKLVGTIYERELLR 110 (111)
T ss_pred --------------------cccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC---CCeEEEEEEhHHhhc
Confidence 001345677778889999999999999999999999999997 789999999999985
No 35
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=6e-13 Score=113.79 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=84.0
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++++||+|++ +++++|+++.+|+.+.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----~~~~~Givt~~Dl~~~~--------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR----KQQFVGMLTITDFILIL--------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC----CCEEEEEEEHHHHhhhe---------------------------
Confidence 47889999999999999999999999999963 17999999999986411
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCC-CCeEEEEehhhcc
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGILTRHDFM 626 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~-g~lvGIITr~Dll 626 (642)
. +.++++++++.+++++|.+++.+++||+|+ + |+++|+||++|++
T Consensus 51 -----------------------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~~~giit~~d~~ 96 (98)
T cd04618 51 -----------------------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP---STGTGLYILTSRRIL 96 (98)
T ss_pred -----------------------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC---CCCCceEEeehhhhh
Confidence 0 568999999999999999999999999997 5 8999999999997
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 97 ~ 97 (98)
T cd04618 97 K 97 (98)
T ss_pred c
Confidence 5
No 36
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.45 E-value=6e-13 Score=142.86 Aligned_cols=128 Identities=20% Similarity=0.218 Sum_probs=108.3
Q ss_pred cccccccccccC--CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCC
Q 006517 456 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 533 (642)
Q Consensus 456 l~~~~V~diM~~--~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~ 533 (642)
+++.+|+|+|++ ++.+++.+++++++.+.+.+++|+.+||++++ .++++|+++.+|+...+.++
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~----~d~ivGiv~~kDll~~~~~~---------- 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET----IDNITGVLYIKDLLPHLNKK---------- 253 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC----CCceEEEEEHHHHHhHhccC----------
Confidence 678899999998 79999999999999999999999999999864 27999999999997533210
Q ss_pred cccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCC
Q 006517 534 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 613 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~ 613 (642)
..+++++|+ ++.+|++++++.++++.|++.+.+..+|+|+ .
T Consensus 254 -----------------------------------~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~ 294 (408)
T TIGR03520 254 -----------------------------------NFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---Y 294 (408)
T ss_pred -----------------------------------CCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---C
Confidence 012345554 5789999999999999999999999999998 7
Q ss_pred CCeEEEEehhhcchhHhhccCcc
Q 006517 614 PPIVGILTRHDFMPEHVLGLYPH 636 (642)
Q Consensus 614 g~lvGIITr~Dll~~~~~~~~~~ 636 (642)
|.++|+||.+|++++...+...+
T Consensus 295 G~~~GiVT~eDileeivgei~de 317 (408)
T TIGR03520 295 GGTSGLVTLEDIIEEIVGDISDE 317 (408)
T ss_pred CCEEEEEEHHHHHHHHhCCCCCc
Confidence 89999999999999887655443
No 37
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=1.1e-12 Score=116.24 Aligned_cols=114 Identities=23% Similarity=0.208 Sum_probs=91.6
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++..|+.+........
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----~~~~Givt~~dl~~~~~~~~~~--------------------- 55 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-----GDLVGVVSRKDLLKASIGGADL--------------------- 55 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CCEEEEEEHHHHHHHHHcCCCc---------------------
Confidence 56789999999999999998888999999987 8999999999998765421100
Q ss_pred cCCCCCccccccccchhhhhccccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhc
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 625 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dl 625 (642)
....+.++|.+ ++.++++++++.+++++|.+++.+.+||+|++.+.++++|+||++|+
T Consensus 56 --------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l 115 (118)
T cd04617 56 --------------------QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNI 115 (118)
T ss_pred --------------------cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhe
Confidence 01223456653 57799999999999999999999999999971101689999999999
Q ss_pred ch
Q 006517 626 MP 627 (642)
Q Consensus 626 l~ 627 (642)
++
T Consensus 116 ~~ 117 (118)
T cd04617 116 TK 117 (118)
T ss_pred ec
Confidence 75
No 38
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.43 E-value=8.1e-13 Score=135.29 Aligned_cols=130 Identities=16% Similarity=0.267 Sum_probs=107.5
Q ss_pred cccccccccccC--CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCC
Q 006517 456 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 533 (642)
Q Consensus 456 l~~~~V~diM~~--~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~ 533 (642)
+.+.+|+|+|++ ++.+++.++++.++.+.+.+++++.+||+|++ .++++|+++.+|++..+.+..
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~----~d~iiGiv~~kDll~~~~~~~--------- 130 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----KDHIEGILMAKDLLPFMRSDA--------- 130 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC----CCcEEEEEEHHHHHhHhhccC---------
Confidence 567799999998 79999999999999999999999999999863 268999999999985432110
Q ss_pred cccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCC
Q 006517 534 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 613 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~ 613 (642)
...++.++|.+ ++++++++++.++++.|++.+.+.+||+|+ .
T Consensus 131 ----------------------------------~~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~ 172 (292)
T PRK15094 131 ----------------------------------EAFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDE---F 172 (292)
T ss_pred ----------------------------------CcCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---C
Confidence 00123456654 558999999999999999999999999998 7
Q ss_pred CCeEEEEehhhcchhHhhccCcc
Q 006517 614 PPIVGILTRHDFMPEHVLGLYPH 636 (642)
Q Consensus 614 g~lvGIITr~Dll~~~~~~~~~~ 636 (642)
|.++|+||++|+++....+...+
T Consensus 173 G~viGiVTleDIle~ivGei~de 195 (292)
T PRK15094 173 GGVSGLVTIEDILELIVGEIEDE 195 (292)
T ss_pred CCEEEEeEHHHHHHHHhCCCccc
Confidence 88999999999999888665443
No 39
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.43 E-value=1.3e-12 Score=114.96 Aligned_cols=113 Identities=21% Similarity=0.258 Sum_probs=93.3
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~dl~~~~~~~~~~--------------------- 55 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-----GGVVGIITLPDLLRALEADEAG--------------------- 55 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-----CCEEEEEEHHHHHHHHhccccc---------------------
Confidence 56788999999999999999999999999987 8999999999998765431100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
....++++|.+++.++.+++++.+++++|.+++.+.+||+|+ .++|+++|+||++|+++
T Consensus 56 --------------------~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 56 --------------------EPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLL 114 (115)
T ss_pred --------------------ccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhc
Confidence 011245567788899999999999999999999999999997 11278999999999985
No 40
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.4e-12 Score=116.24 Aligned_cols=122 Identities=20% Similarity=0.236 Sum_probs=96.9
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+.+.+........ .+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~Giv~~~~l~~~~~~~~~~~~--------------~~~~ 62 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-----RRLVGIVTQRDLLRHARPDGRRPL--------------RGRL 62 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-----CCEEEEEEHHHHHhhhcccccchh--------------hhhh
Confidence 567889999999999999999999999999986 899999999999865542110000 0000
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
+......++.++|++++.++++++++.+++++|.+.+.+.+||+|+ +|+++|+||++|++
T Consensus 63 -----------------~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g~~~Gvit~~di~ 122 (124)
T cd04600 63 -----------------RGRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE---DRRLVGIVTQTDLI 122 (124)
T ss_pred -----------------hcccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC---CCCEEEEEEhHHhh
Confidence 0001124567788889999999999999999999999999999997 78999999999998
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 123 ~ 123 (124)
T cd04600 123 A 123 (124)
T ss_pred c
Confidence 5
No 41
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=2.4e-12 Score=112.17 Aligned_cols=108 Identities=21% Similarity=0.273 Sum_probs=92.6
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+.+.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~~~~---------------------- 54 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-----GRLVGIVTSWDISKAVARDK---------------------- 54 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-----CcEEEEEeHHHHHHHHhhCc----------------------
Confidence 467889999999999999999899999999987 89999999999976543210
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
.++.++|.+++.++++++++++++++|.+.+.+.+||+++ +|+++|+||++|++
T Consensus 55 -----------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~G~v~~~di~ 108 (110)
T cd04605 55 -----------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDA---ENRVIGIITSEDIS 108 (110)
T ss_pred -----------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC---CCcEEEEEEHHHhh
Confidence 1244566678889999999999999999999999999997 78999999999997
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 109 ~ 109 (110)
T cd04605 109 K 109 (110)
T ss_pred h
Confidence 4
No 42
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.41 E-value=8.6e-13 Score=143.87 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=108.5
Q ss_pred hHHHHHHHhcCCCccccc---ccccccccccccccc---CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeE
Q 006517 434 GVYDQIVKLKGLPYLEAH---AEPYMKNLVASDVVS---GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPEL 507 (642)
Q Consensus 434 ~iy~~~l~~~g~~~~~~~---~~~~l~~~~V~diM~---~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~l 507 (642)
.+--.+.+.+|+.+.+.. +++.-.-.+|+++|. .++.++++++|+.++.+.|.+++++.+||+|++ .+++++
T Consensus 66 alAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~--~~~gkL 143 (502)
T PRK07107 66 NMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDG--TAHGKL 143 (502)
T ss_pred HHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCC--CcCCEE
Confidence 444445556666643211 111111246778876 356799999999999999999999999999962 112899
Q ss_pred EEEEeHHHHHHHHhccccccccccCCcccccccchhhhcccCCCCCccccccccchhhhhccccccccccc--CCceecC
Q 006517 508 CGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT--SPYTVVE 585 (642)
Q Consensus 508 vGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~--~~~~v~~ 585 (642)
+|+||.+|++.... +...+++++|++ +++++++
T Consensus 144 vGIVT~~DLr~~~~---------------------------------------------~~~~~V~dIMt~~~~~itv~~ 178 (502)
T PRK07107 144 LGIVTSRDYRISRM---------------------------------------------SLDTKVKDFMTPFEKLVTANE 178 (502)
T ss_pred EEEEEcHHhhcccc---------------------------------------------CCCCCHHHHhCCCCCeEEECC
Confidence 99999999863100 001346678875 6788999
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchh
Q 006517 586 TMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 628 (642)
Q Consensus 586 ~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~ 628 (642)
++++++|+++|.+++++.+||+|+ +++++|+||++|+++.
T Consensus 179 d~~l~eAl~lM~e~~i~~LPVVD~---~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 179 GTTLKEANDIIWDHKLNTLPIVDK---NGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEhHHHHhc
Confidence 999999999999999999999997 7899999999999984
No 43
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2.5e-12 Score=112.21 Aligned_cols=109 Identities=23% Similarity=0.245 Sum_probs=92.7
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|+++..|+.+.+.+...
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-----~~~~G~v~~~~l~~~~~~~~~---------------------- 54 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-----GHLVGLLTRDDLIRALAEGGP---------------------- 54 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-----CcEEEEeeHHHHHHHHHhcCC----------------------
Confidence 46788999999999999988888999999986 899999999999876543110
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
..++.++|..++.+++++++++++++.|.+.+.+.+||+|+ +++++|++|++|+.+
T Consensus 55 ---------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~G~it~~dl~~ 110 (111)
T cd04639 55 ---------------------DAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG---SGRLVGLVTLENVGE 110 (111)
T ss_pred ---------------------CCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC---CCCEEEEEEHHHhhc
Confidence 01345677778889999999999999999999999999996 689999999999975
No 44
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.40 E-value=1.1e-12 Score=117.52 Aligned_cols=113 Identities=18% Similarity=0.186 Sum_probs=93.4
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.++++++++.++.+.|++++++.+||+|++ ++++|+++.+|+.+.+.+++.
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-----~~~~Gii~~~dl~~~~~~~~~--------------------- 55 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-----GKILGMVTLGNLLSSLSSGKV--------------------- 55 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CCEEEEEEHHHHHHHHHHhcc---------------------
Confidence 467889999999999999999999999999987 899999999999875543210
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHH---------cCCcEEEEeeCCCCCCCeE
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQ---------LALRHLCVVPKTPGRPPIV 617 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~---------~~~~~lpVvd~~~~~g~lv 617 (642)
+...+++++|++++.+++++++++++.+++.. .+.+++||+|+ +|+++
T Consensus 56 --------------------~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~ 112 (124)
T cd04608 56 --------------------QPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK---QEKPI 112 (124)
T ss_pred --------------------CCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc---ccceE
Confidence 01235778899999999999999999996543 35778889987 78999
Q ss_pred EEEehhhcchh
Q 006517 618 GILTRHDFMPE 628 (642)
Q Consensus 618 GIITr~Dll~~ 628 (642)
|+||++|++++
T Consensus 113 Givt~~Dl~~~ 123 (124)
T cd04608 113 GIVTKIDLLSY 123 (124)
T ss_pred EEEehhHhhhh
Confidence 99999999864
No 45
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=3.2e-12 Score=112.07 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=92.6
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.+...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~dl~~~~~~~~~---------------------- 55 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN-----GRLLGTVTDGDIRRALLKGLS---------------------- 55 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC-----CCEEEEEEcHHHHHHHhcCCC----------------------
Confidence 35678999999999999998888899999987 899999999999865543110
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
...++.++|++++.++++++++.+++++|.+.+.+++||+|+ +++++|+||++|++.
T Consensus 56 --------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvit~~di~~ 112 (113)
T cd04607 56 --------------------LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDE---EGRVVGLATLDDLLS 112 (113)
T ss_pred --------------------cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC---CCCEEEEEEhHHhcc
Confidence 012345677777889999999999999999999999999997 789999999999985
No 46
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=2e-12 Score=112.45 Aligned_cols=105 Identities=22% Similarity=0.292 Sum_probs=91.1
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.+++++++++++.+.|.+++++.+||+|++ ++++|+++.+|+.....
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~-------------------------- 51 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-----NKVVGIVTSKDVAGKDP-------------------------- 51 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-----CeEEEEecHHHHhcccc--------------------------
Confidence 57789999999999999999888999999987 89999999999863100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
..+++++|.+.+.++++++++.+++++|.+.+.+.+||+|+ +|+++|++|++|+++
T Consensus 52 ---------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~G~it~~di~~ 107 (108)
T cd04596 52 ---------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD---NKKLLGIISRQDVLK 107 (108)
T ss_pred ---------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC---CCCEEEEEEHHHhhc
Confidence 02345677778889999999999999999999999999997 789999999999985
No 47
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=3.7e-12 Score=111.34 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=93.3
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.+++++++++++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~~l~~~~~~~~~---------------------- 54 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-----ERPIGIVTERDIVRAVAAGID---------------------- 54 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----CCEEEEeeHHHHHHHHhccCC----------------------
Confidence 56788999999999999998899999999987 899999999999875543110
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
...++.++|++++.++.+++++.+++++|.+.+...+||+|+ +|+++|++|++|+++
T Consensus 55 --------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~g~~~Gilt~~dl~~ 111 (112)
T cd04624 55 --------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK---GGELVGVISIRDLVR 111 (112)
T ss_pred --------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC---CCcEEEEEEHHHhcc
Confidence 012345677778889999999999999999999999999997 789999999999985
No 48
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=3.7e-12 Score=108.48 Aligned_cols=94 Identities=15% Similarity=0.331 Sum_probs=84.1
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----~~~~Giv~~~dl~~~---------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-----GKLSGIITERDLIAK---------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----CCEEEEEEHHHHhcC----------------------------
Confidence 57789999999999999998999999999986 899999999998631
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
..+.++++++++.+++++|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 49 ------------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~---~~~~~Giit~~di~~ 95 (96)
T cd04614 49 ------------------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIING---NDKLIGLLRDHDLLK 95 (96)
T ss_pred ------------------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC---CCcEEEEEEHHHhhc
Confidence 01568899999999999999999999999997 689999999999985
No 49
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.38 E-value=2.2e-12 Score=141.83 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=115.5
Q ss_pred hhcCchHHHHHHHhcCCCcccc-ccccccccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeE
Q 006517 429 DSFNQGVYDQIVKLKGLPYLEA-HAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPEL 507 (642)
Q Consensus 429 ~~~~~~iy~~~l~~~g~~~~~~-~~~~~l~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~l 507 (642)
+++..-.++.|+..+|+..... ...+.++.++++|+|.+++.++++++++.++.+.|.+++++.+||+|++ +++
T Consensus 304 ~y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-----~~~ 378 (454)
T TIGR01137 304 NYMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-----GKV 378 (454)
T ss_pred cccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CeE
Confidence 3444555667888777632211 1235588999999999999999999999999999999899999999986 899
Q ss_pred EEEEeHHHHHHHHhccccccccccCCcccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCC
Q 006517 508 CGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETM 587 (642)
Q Consensus 508 vGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~ 587 (642)
+|+|+.+|+.+.+.+.... ...++.++|++++.++++++
T Consensus 379 ~Givt~~dl~~~~~~~~~~-----------------------------------------~~~~v~~im~~~~~~v~~~~ 417 (454)
T TIGR01137 379 LGSVTLRELLSALFAGKAN-----------------------------------------PDDAVSKVMSKKFIQIGEGE 417 (454)
T ss_pred EEEEEHHHHHHHHhccCCC-----------------------------------------cCCCHHHhcCCCCeEECCcC
Confidence 9999999998755431100 01235667888888999999
Q ss_pred CHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhH
Q 006517 588 SLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 629 (642)
Q Consensus 588 ~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~ 629 (642)
++.+++++|.+.+ .+||++ +++++|+||++|+++.+
T Consensus 418 ~l~~a~~~~~~~~---~~vV~~---~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 418 KLSDLSKFLEKNS---SAIVTE---EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred cHHHHHHHHHHCC---eeEEEE---CCEEEEEEEHHHHHHhh
Confidence 9999999998864 355555 68899999999999753
No 50
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.38 E-value=4.9e-12 Score=109.80 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=91.6
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~dl~~~~~~------------------------ 52 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-----NKLLGIVSLESLEQAYKE------------------------ 52 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-----CcEEEEEEHHHHHHHhhc------------------------
Confidence 456788999999999999999899999999986 899999999999753311
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
..++.++|.+++.++++++++.++.+.|.+.+.+++||+|+ +|+++|++|++|++
T Consensus 53 ----------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~---~g~~~Gvit~~~l~ 107 (109)
T cd04583 53 ----------------------AKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE---DGKLVGLITRSSLV 107 (109)
T ss_pred ----------------------CCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC---CCeEEEEEehHHhh
Confidence 01244567778889999999999999999999999999997 78999999999997
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 108 ~ 108 (109)
T cd04583 108 D 108 (109)
T ss_pred c
Confidence 5
No 51
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=4.8e-12 Score=110.60 Aligned_cols=111 Identities=19% Similarity=0.230 Sum_probs=92.6
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~Giv~~~~l~~~~~~~~~~--------------------- 55 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-----GRLVGIFSERDIVRKVALRGAS--------------------- 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-----CCEEEEEehHHHHHHHhhcCCC---------------------
Confidence 46788999999999999999999999999987 8999999999998765431100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
....++.++|++++.++++++++.+++++|.+.+.+++||+| +++++|+||++|+++
T Consensus 56 -------------------~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~----~~~~~Gvit~~di~~ 112 (113)
T cd04623 56 -------------------ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD----GGKLVGIVSIGDVVK 112 (113)
T ss_pred -------------------ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe----CCEEEEEEEHHHhhc
Confidence 001235667777888999999999999999999999999998 478999999999975
No 52
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=4.7e-12 Score=111.16 Aligned_cols=109 Identities=18% Similarity=0.266 Sum_probs=88.6
Q ss_pred CeEEecCcccHHHHHHHHhhCC-CCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 468 PLITFSGVEKVGNIMHALRLTR-HNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~-~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
++.++++++++.++.+.|.+++ .+.+||+|++ ++++|+++.+|+.+...+...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~dl~~~~~~~~~--------------------- 55 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-----GRYVGIISLADLRAIPTSQWA--------------------- 55 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-----CcEEEEEEHHHHHHHHHhhcc---------------------
Confidence 5678999999999999987664 7889999987 899999999999865432100
Q ss_pred ccCCCCCccccccccchhhhhccccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhh
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHD 624 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~D 624 (642)
..+++++|++ .+.++.+++++.++++.|.+.+.+++||+|+ +++++|++|++|
T Consensus 56 ----------------------~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~---~~~~~Gvl~~~d 110 (114)
T cd04801 56 ----------------------QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED---SGQVIGLITEAD 110 (114)
T ss_pred ----------------------ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC---CCcEEEEEeccc
Confidence 0123445543 2568999999999999999999999999996 689999999999
Q ss_pred cch
Q 006517 625 FMP 627 (642)
Q Consensus 625 ll~ 627 (642)
+++
T Consensus 111 i~~ 113 (114)
T cd04801 111 LLR 113 (114)
T ss_pred eec
Confidence 985
No 53
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=4.5e-12 Score=110.98 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=92.4
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----~~~~G~v~~~dl~~~~~~~~~---------------------- 54 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDK-----KRLVGIITRYDVLSYALESEE---------------------- 54 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-----CCEEEEEEHHHHHHhhhhhhh----------------------
Confidence 35678999999999999999999999999986 899999999999864332110
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
....++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|++|++|+++
T Consensus 55 -------------------~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 -------------------LKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD---KGKVGGIVTEDDILR 112 (113)
T ss_pred -------------------hcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC---CCeEEEEEEHHHhhc
Confidence 0012345677778899999999999999999999999999997 789999999999975
No 54
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.37 E-value=5e-12 Score=109.30 Aligned_cols=104 Identities=14% Similarity=0.049 Sum_probs=88.9
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+++..|+.+...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-----g~~~Giv~~~dl~~~~~-------------------------- 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-----GQPLGFVTRREAARASG-------------------------- 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-----CCEEEEEeHHHHHHhcc--------------------------
Confidence 56788999999999999998888899999876 89999999999975311
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
.++.++|.+.+.++++++++.+++++|.+.+...+||+|+ +++++|+||++|+++
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 51 ----------------------GCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE---DGRYVGEVTQRSIAD 105 (106)
T ss_pred ----------------------cchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC---CCcEEEEEEHHHhhc
Confidence 0133456666778999999999999999999999999997 789999999999985
No 55
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=5.7e-12 Score=110.69 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=92.0
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++.+||+|++ .++++|+++.+|+.+.+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~~~G~v~~~dl~~~~~~~~~~--------------------- 56 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR----ESDAYGIVTMRDILKKVVAEGRD--------------------- 56 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC----CCcEEEEEehHHHHHHHHhCCCC---------------------
Confidence 57789999999999999998899999999862 16999999999998755431100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
....++.++|.+++.++++++++.+++++|.+.+.+.+||+| +|+++|+||++|+++
T Consensus 57 -------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd----~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 57 -------------------PDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE----NNELIGIISLTDIFL 113 (114)
T ss_pred -------------------CCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee----CCEEEEEEEHHHhhc
Confidence 001235567777888999999999999999999999999998 478999999999975
No 56
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=5.1e-12 Score=112.26 Aligned_cols=120 Identities=27% Similarity=0.365 Sum_probs=95.9
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+......... +.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~v~~~~l~~~~~~~~~~~~~--------------~~-- 60 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-----GKLVGLLTQRDLLRAALSSLSDNGE--------------ES-- 60 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-----CCEEEEEEHHHHHHHhccccccccc--------------cc--
Confidence 56789999999999999999999999999987 8999999999998765431100000 00
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
. ......++.++|++++.++++++++.++++.|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 61 --------~--------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvit~~dl~~ 121 (122)
T cd04803 61 --------L--------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD---KGTLVGIITRSDFLR 121 (122)
T ss_pred --------c--------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC---CCCEEEEEEHHHhhc
Confidence 0 001124567788888999999999999999999999999999996 689999999999985
No 57
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=4.2e-12 Score=111.31 Aligned_cols=112 Identities=22% Similarity=0.278 Sum_probs=92.4
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+.+.+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~v~~~~l~~~~~~~~~~~-------------------- 56 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-----GNLVGFLSEQDCLKQLLESSYHC-------------------- 56 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-----CeEEEEeehHHHHHHhhhhhhcc--------------------
Confidence 56788999999999999988888899999987 89999999999987554311000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
....++.++|++++.++.+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 57 -------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~~~~Gvit~~di~~ 113 (114)
T cd04629 57 -------------------DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD----DGKLVGQISRRDVLR 113 (114)
T ss_pred -------------------CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEE----CCEEEEEEEHHHHhc
Confidence 001235567777888999999999999999999999999998 478999999999985
No 58
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.36 E-value=1.7e-12 Score=141.54 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=105.7
Q ss_pred cccccccccccCCeEEecCcccHHHHHHHHhh-----CCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccc
Q 006517 456 MKNLVASDVVSGPLITFSGVEKVGNIMHALRL-----TRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKT 530 (642)
Q Consensus 456 l~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~-----~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~ 530 (642)
++..+++++|++++.++++++|++++.+.+++ ++...+||+|++ ++++|+++.+|+... +
T Consensus 128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-----~~l~GvV~l~dLl~a--~-------- 192 (449)
T TIGR00400 128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-----KHLKGVLSIRDLILA--K-------- 192 (449)
T ss_pred CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-----CeEEEEEEHHHHhcC--C--------
Confidence 45678999999999999999999999999975 334567888876 899999999998631 0
Q ss_pred cCCcccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCC
Q 006517 531 MTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKT 610 (642)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~ 610 (642)
...+++++|++++.+++++++++++.+.|++++...+||+|+
T Consensus 193 -------------------------------------~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~- 234 (449)
T TIGR00400 193 -------------------------------------PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN- 234 (449)
T ss_pred -------------------------------------CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-
Confidence 012356788888899999999999999999999999999998
Q ss_pred CCCCCeEEEEehhhcchhHhhccCcc
Q 006517 611 PGRPPIVGILTRHDFMPEHVLGLYPH 636 (642)
Q Consensus 611 ~~~g~lvGIITr~Dll~~~~~~~~~~ 636 (642)
+|+++|+||.+|+++...++..++
T Consensus 235 --~g~lvGiIt~~Dil~~l~~~~~ed 258 (449)
T TIGR00400 235 --EGRLVGIVTVDDIIDVIQSEATED 258 (449)
T ss_pred --CCeEEEEEEHHHHHHHHHhhhHHH
Confidence 789999999999998877665444
No 59
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.36 E-value=6.3e-12 Score=110.00 Aligned_cols=112 Identities=23% Similarity=0.352 Sum_probs=93.6
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++++|+.+.+.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~G~v~~~~l~~~~~~~~~~--------------------- 55 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-----GRLVGIVSLDDIREILFDPSLY--------------------- 55 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-----CCEEEEEEHHHHHHHHhccccc---------------------
Confidence 56789999999999999999999999999986 8999999999998755431100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
...++.++|++++.++++++++.++++.|.+.+.+.+||+|+ + +++++|++|++|+++
T Consensus 56 --------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~-~~~~~Gvvt~~di~~ 113 (114)
T cd04613 56 --------------------DLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD-D-PGKLLGILSRSDLLS 113 (114)
T ss_pred --------------------ccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC-C-CCEEEEEEEhHHhhc
Confidence 013456678888999999999999999999999999999983 1 378999999999975
No 60
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.36 E-value=2.9e-12 Score=138.82 Aligned_cols=122 Identities=24% Similarity=0.232 Sum_probs=105.7
Q ss_pred ccccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCc
Q 006517 455 YMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGS 534 (642)
Q Consensus 455 ~l~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~ 534 (642)
.++.+++.++|.+++++++++++++++.+.|.+++++.+||+|+ ++++|+|+.+|+... +
T Consensus 84 ~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~------gklvGIVT~rDL~~~--~------------ 143 (475)
T TIGR01303 84 TVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE------DRPVGLVTDSDLLGV--D------------ 143 (475)
T ss_pred HHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEEEHHHhhcC--C------------
Confidence 46678899999999999999999999999999999888888886 799999999998421 0
Q ss_pred ccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCC
Q 006517 535 DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRP 614 (642)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g 614 (642)
...+++++|+++++++++++++++++++|.+++.+++||+|+ ++
T Consensus 144 ---------------------------------~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~---~g 187 (475)
T TIGR01303 144 ---------------------------------RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA---DG 187 (475)
T ss_pred ---------------------------------CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC
Confidence 012366788889999999999999999999999999999997 78
Q ss_pred CeEEEEehhhcchhHhhc
Q 006517 615 PIVGILTRHDFMPEHVLG 632 (642)
Q Consensus 615 ~lvGIITr~Dll~~~~~~ 632 (642)
+++|+||++||++.....
T Consensus 188 ~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 188 TLAGILTRTGALRATIYT 205 (475)
T ss_pred eEEEEEEHHHHHHHHhCC
Confidence 999999999999855544
No 61
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=8e-12 Score=109.80 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=88.1
Q ss_pred CeEEecCcccHHHHHHHHhhCC-CCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 468 PLITFSGVEKVGNIMHALRLTR-HNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~-~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
++.++++++++.++.+.|.+++ ...+||+|+ ++++|+++.+|+.+.+.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~dl~~~~~~~~~~-------------------- 55 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK------GRLLGIFTERDIVRLTAIGKDL-------------------- 55 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC------CcEEEEEeHHHHHHHHhcCCCc--------------------
Confidence 4668899999999999998877 566777764 7999999999998755431100
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCC--CCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhh
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVET--MSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHD 624 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~--~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~D 624 (642)
...++.++|.+++.+++++ +++.+++++|.+++.+.+||+|+ +|+++|+||++|
T Consensus 56 ---------------------~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~---~~~~~Gvit~~d 111 (115)
T cd04620 56 ---------------------SDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD---QGQLIGLVTAES 111 (115)
T ss_pred ---------------------cccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC---CCCEEEEEEhHH
Confidence 0123456677777888887 78999999999999999999997 789999999999
Q ss_pred cch
Q 006517 625 FMP 627 (642)
Q Consensus 625 ll~ 627 (642)
+++
T Consensus 112 l~~ 114 (115)
T cd04620 112 IRQ 114 (115)
T ss_pred hhc
Confidence 985
No 62
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=4.7e-12 Score=114.96 Aligned_cols=133 Identities=22% Similarity=0.256 Sum_probs=96.4
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.++++++++.++.+.|.+++++.+||+|++ ++++|+++++|+.+........... .+.+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-----~~~~Gvi~~~dl~~~~~~~~~~~~~-----------~~~~~~ 65 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-----GRLVGIVSEGDLLRRAELGTERRRA-----------RWLDLL 65 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-----CCEEEEeeHHHHHHHhcccCcchhh-----------hHHHHh
Confidence 467889999999999999999999999999986 8999999999998654432100000 000000
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
.. .++.. .........+++++|.+++.++.+++++.+++++|.+.+.+++||+| +|+++|+||++|++
T Consensus 66 ~~-------~~~~~-~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd----~g~~~Gvit~~di~ 133 (135)
T cd04586 66 AG-------AEELA-AAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR----GGRLVGIVSRADLL 133 (135)
T ss_pred cc-------hHHHH-HHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec----CCEEEEEEEhHhhh
Confidence 00 00000 00000112457788888899999999999999999999999999998 57899999999998
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 134 ~ 134 (135)
T cd04586 134 R 134 (135)
T ss_pred c
Confidence 5
No 63
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=7.8e-12 Score=112.99 Aligned_cols=130 Identities=20% Similarity=0.254 Sum_probs=96.1
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++..|+.+.+.+........ ...+.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----~~~~G~i~~~~l~~~~~~~~~~~~~~----------~~~~~-- 64 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-----GRVVGIVSEGDLIRKIYKGKGLFYVT----------LLYSV-- 64 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-----CCEEEEEeHHHHHHHHhccCCccccc----------ccccc--
Confidence 56789999999999999998889999999987 89999999999987665321100000 00000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
...+ . .........++.++|++++..+.+++++.+++++|.+.+.+.+||+| +++++|++|++|+++
T Consensus 65 -------~~~~-~-~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~~~iGvit~~dl~~ 131 (132)
T cd04636 65 -------IFLD-E-SKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD----DGKLVGIISRGDIIR 131 (132)
T ss_pred -------cccc-h-HHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE----CCEEEEEEEHHHhhc
Confidence 0000 0 00000112367788888899999999999999999999999999998 478999999999985
No 64
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1e-11 Score=111.21 Aligned_cols=124 Identities=20% Similarity=0.273 Sum_probs=92.4
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+.+...+....... ......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-----~~~~Giv~~~dl~~~~~~~~~~~~~-----------~~~~~~- 64 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-----GKLIGNISASDLKGLLLSPDDLLLY-----------RTITFK- 64 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-----CcEEEEEEHHHhhhhhcCcchhhcc-----------cchhhh-
Confidence 46789999999999999999899999999986 8999999999998765432100000 000000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
+ .........+.|.+++.++++++++.+++++|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 65 ----------~------~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~~~~~Giit~~dil~ 125 (126)
T cd04642 65 ----------E------LSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE---EGKPIGVITLTDIIS 125 (126)
T ss_pred ----------h------hhhhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC---CCCEEEEEEHHHHhc
Confidence 0 000001122345667889999999999999999999999999997 789999999999974
No 65
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=8.4e-12 Score=108.92 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=91.3
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.+++++++++++.+.|.+++++.+||+|++ ++++|+++.+|+.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~dl~~~~~~~~~---------------------- 54 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-----EKLKGVVTFTDILDLDLFESF---------------------- 54 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-----CCEEEEEehHHhHHHHhhccc----------------------
Confidence 56789999999999999999999999999987 899999999999864332100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
...++.++|.+++.++.+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 55 --------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~~~~G~it~~di~~ 110 (111)
T cd04626 55 --------------------LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVD----DNKLIGVVRTKDILD 110 (111)
T ss_pred --------------------ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE----CCEEEEEEEhHHhcc
Confidence 01234556777888999999999999999999999999998 478999999999974
No 66
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.34 E-value=1.3e-11 Score=107.46 Aligned_cols=109 Identities=23% Similarity=0.311 Sum_probs=92.2
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+...+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~~l~~~~~~~~~--------------------- 53 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD------GKLVGIVTLSDIAHAIARGLE--------------------- 53 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC------CEEEEEEEHHHHHHHHhcccc---------------------
Confidence 35778999999999999999989999999987 799999999999875443110
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
..++.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||++|++
T Consensus 54 ----------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~i~~~dl~ 108 (110)
T cd04588 54 ----------------------LAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD---EGRPVGIITRTDIL 108 (110)
T ss_pred ----------------------ccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC---CCCEEEEEEhHHhh
Confidence 02345567778889999999999999999999999999997 68999999999998
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 109 ~ 109 (110)
T cd04588 109 R 109 (110)
T ss_pred c
Confidence 5
No 67
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.2e-11 Score=110.15 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=91.5
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++.+||+|++ +++++|+++.+|+.+.+.+...... ..+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----~~~~~Giv~~~dl~~~~~~~~~~~~-------------~~~~-- 62 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE----SGEVIGILSQRRLVEFLWENARSFP-------------GLDP-- 62 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC----CCcEEEEEEHHHHHHHHHHhHHhcc-------------chhh--
Confidence 56788999999999999998888999999873 1689999999999876543210000 0000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
.........++|.+++.++++++++.++++.|.+++.+++||+|+ +++++|+||++|+-
T Consensus 63 -----------------~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~vGiit~~di~ 121 (123)
T cd04627 63 -----------------LYPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN---QGNLIGNISVTDVR 121 (123)
T ss_pred -----------------hhhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC---CCcEEEEEeHHHhh
Confidence 000011223466778889999999999999999999999999997 78999999999974
No 68
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=7.8e-12 Score=111.06 Aligned_cols=120 Identities=22% Similarity=0.335 Sum_probs=93.7
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++++|+++.......... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~~~~~~~~--------------~~~-- 60 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-----GELIGIITRRDIIRAGSVRTSVED--------------QQR-- 60 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-----CcEEEEEEcHHHHhhccccccccc--------------hhh--
Confidence 56789999999999999998889999999987 899999999999754211000000 000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
.......++.++|.+++..+++++++.++++.|.+.+.+.+||+|+ +|+++|++|++|+++
T Consensus 61 ----------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g~~~Gvit~~dl~~ 121 (122)
T cd04635 61 ----------------TQTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE---KDQLVGIVDRHDVLK 121 (122)
T ss_pred ----------------hhhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC---CCcEEEEEEhHHhhc
Confidence 0000123456677788899999999999999999999999999997 789999999999985
No 69
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.33 E-value=9.3e-12 Score=109.01 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=93.1
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+++.+.+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~~i~~~~~~~~~~--------------------- 56 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-----GRLVGIFTDGDLRRALEKGLDI--------------------- 56 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-----CCEEEEechHHHHHHHhccCcc---------------------
Confidence 45678899999999999988888899999987 8999999999998766532100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
...++.++|++++.++++++++.+++++|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 57 --------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~iG~it~~di~~ 113 (114)
T cd04604 57 --------------------LTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDD---NGRPVGVLHIHDLLR 113 (114)
T ss_pred --------------------ccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CCCEEEEEEHHHhhc
Confidence 002355677778889999999999999999999999999997 789999999999985
No 70
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.4e-11 Score=107.31 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=91.9
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.+++.++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~v~~~dl~~~~~~~~---------------------- 53 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG------GRVVGIISRRDVEKALRHGL---------------------- 53 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC------CEEEEEEEHHHHHHHHhccc----------------------
Confidence 46778999999999999999888999999987 79999999999986543211
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
...++.++|++++.++++++++.+++++|.+.+.+.+||+| +|+++|+||++|++
T Consensus 54 ---------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~~~~Gvvt~~di~ 108 (110)
T cd04595 54 ---------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE----DGRLVGIVTRTDLL 108 (110)
T ss_pred ---------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe----CCEEEEEEEhHHhh
Confidence 01235567778889999999999999999999999999998 57899999999998
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 109 ~ 109 (110)
T cd04595 109 R 109 (110)
T ss_pred c
Confidence 5
No 71
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.2e-11 Score=110.36 Aligned_cols=124 Identities=21% Similarity=0.284 Sum_probs=95.6
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.++++++++.++.+.|.+.+++.+||+|++ +++++|+++.+|+.+.+.+....... ..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~----~~~~~G~v~~~dl~~~~~~~~~~~~~-----------~~---- 61 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG----TGKLVGIITATDILKYLGGGEKFNKI-----------KT---- 61 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCC----CCEEEEEEEHHHHHHHhhccchhccc-----------cc----
Confidence 356788999999999999999999999999873 27999999999998766532100000 00
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
. .. ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|++
T Consensus 62 --~-------~~------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---~~~~~Gvit~~di~ 123 (125)
T cd04631 62 --G-------NG------LEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD---DGKLVGIVTERDLL 123 (125)
T ss_pred --c-------cc------chhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC---CCcEEEEEEHHHhh
Confidence 0 00 000123466778888999999999999999999999999999996 68999999999998
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 124 ~ 124 (125)
T cd04631 124 K 124 (125)
T ss_pred c
Confidence 6
No 72
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=9.9e-12 Score=109.25 Aligned_cols=114 Identities=17% Similarity=0.261 Sum_probs=90.6
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
+++++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+.+.+.+.... . ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~Giv~~~dl~~~~~~~~~~-~-------------~~~~-- 60 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-----GKYVGTISLTDILWKLKGLENL-D-------------LERL-- 60 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-----CcEEEEEeHHHHHHHhhccCch-h-------------HHHH--
Confidence 46789999999999999999999999999986 8999999999998755421100 0 0000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
....+.++|.+++.++.+++++.++++.|.+.+ .+||+|+ +++++|+||++|+++
T Consensus 61 --------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~---~~~~~Gvit~~dil~ 115 (116)
T cd04643 61 --------------------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD---DGIFIGIITRREILK 115 (116)
T ss_pred --------------------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC---CCeEEEEEEHHHhhc
Confidence 012356678888899999999999999998865 5999997 789999999999985
No 73
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.32 E-value=6.9e-12 Score=137.15 Aligned_cols=118 Identities=13% Similarity=0.127 Sum_probs=100.2
Q ss_pred cccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccc
Q 006517 460 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRR 539 (642)
Q Consensus 460 ~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~ 539 (642)
++++.|.+++++++++++++++.++|.+++++.+||+|++ ..+++++|+|+.+|+... ..
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~--~~~gkLvGIVt~~DL~~~-~~----------------- 156 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDG--KVGGKLLGIVTSRDIDFV-KD----------------- 156 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCC--ccCCeEEEEEEHHHHhhc-cc-----------------
Confidence 4667888899999999999999999999999999999873 113799999999998621 00
Q ss_pred cchhhhcccCCCCCccccccccchhhhhccccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeE
Q 006517 540 FKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIV 617 (642)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lv 617 (642)
...+++++|++ ++++++++++++|++++|.+++.+.+||+|+ +++++
T Consensus 157 ----------------------------~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~---~g~li 205 (495)
T PTZ00314 157 ----------------------------KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND---NGELV 205 (495)
T ss_pred ----------------------------CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---CCcEE
Confidence 01346678876 7889999999999999999999999999998 78999
Q ss_pred EEEehhhcchh
Q 006517 618 GILTRHDFMPE 628 (642)
Q Consensus 618 GIITr~Dll~~ 628 (642)
|+||++|+++.
T Consensus 206 GIIT~~DIl~~ 216 (495)
T PTZ00314 206 ALVSRSDLKKN 216 (495)
T ss_pred EEEEehHhhhc
Confidence 99999999974
No 74
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=1.4e-11 Score=112.06 Aligned_cols=133 Identities=16% Similarity=0.154 Sum_probs=95.7
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+++..|+.+.+......... .... .+.+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-----~~~~Giv~~~dl~~~~~~~~~~~~~-------~~~~---~~~~ 66 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-----GKPVGVITYRDLAFAEFEDNERGLP-------KKSI---KMKR 66 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-----CCEEEEEeHHHHHHHhhcccccccc-------hhhh---hhhh
Confidence 46788999999999999999999999999987 8999999999998766432110000 0000 0000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
......... ......+++++|.+++..+.+++++.++++.|.+.+.+++||+| +++++|+||++|+++
T Consensus 67 ~~~~~~~~~--------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~----~~~~~Gvit~~di~~ 134 (135)
T cd04621 67 KAGQKRYRY--------VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD----NDNIVGVITKTDICR 134 (135)
T ss_pred hcccccccc--------cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe----CCEEEEEEEHHHHhh
Confidence 000000000 00112356778888888999999999999999999999999998 478999999999985
No 75
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.32 E-value=1.4e-11 Score=108.28 Aligned_cols=109 Identities=19% Similarity=0.276 Sum_probs=88.2
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.+++++++++++.+.|.+.+++.+||+|+. +++++++|+++.+|+......
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~--~~~~~~~G~v~~~dl~~~~~~------------------------- 55 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDG--KSGGKLLGIVTSRDIDFLTDS------------------------- 55 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCC--CcCCEEEEEEEhHHhhhhhcc-------------------------
Confidence 56788999999999999998888899999961 012899999999998632100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecC--CCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhc
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVE--TMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 625 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~--~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dl 625 (642)
..+++++|.+.+..+.. ++++.+++++|.+++.+.+||+|+ +++++|+||++|+
T Consensus 56 ---------------------~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~---~~~~~Gvit~~di 111 (114)
T cd04602 56 ---------------------ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVND---DGELVALVTRSDL 111 (114)
T ss_pred ---------------------CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC---CCeEEEEEEHHHh
Confidence 01245677767777766 999999999999999999999997 7899999999998
Q ss_pred ch
Q 006517 626 MP 627 (642)
Q Consensus 626 l~ 627 (642)
++
T Consensus 112 ~~ 113 (114)
T cd04602 112 KK 113 (114)
T ss_pred hc
Confidence 74
No 76
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.31 E-value=2.1e-11 Score=106.20 Aligned_cols=109 Identities=23% Similarity=0.344 Sum_probs=91.9
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+...++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~~l~~~~~~~~~---------------------- 53 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD------GRPLGIVTERDILRLLASGPD---------------------- 53 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC------CEEEEEEeHHHHHHHHhcCCC----------------------
Confidence 4678899999999999999888889999987 799999999999875543110
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 54 --------------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~---~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 --------------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD---DGELLGLLSQTDLLQ 110 (111)
T ss_pred --------------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC---CCcEEEEEEhHHhhc
Confidence 012345677778889999999999999999999999999997 789999999999975
No 77
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.31 E-value=1.9e-11 Score=106.53 Aligned_cols=109 Identities=19% Similarity=0.299 Sum_probs=90.6
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.+++.+++++++.+.|.+++++.+||+|+ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~------~~~~G~v~~~~l~~~~~~~~~~--------------------- 54 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD------GRLVGIVTDRDLRNRVVAEGLD--------------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC------CEEEEEEEhHHHHHHHhccCCC---------------------
Confidence 5778999999999999998888899999987 7999999999998644321100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
...++.++|++++.++++++++.++++.|.+.+.+++||+| +|+++|++|++|+++
T Consensus 55 --------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~~~~Giit~~di~~ 110 (111)
T cd04800 55 --------------------PDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVD----DGRLVGVISATDLLR 110 (111)
T ss_pred --------------------ccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE----CCEEEEEEEHHHhhc
Confidence 01234567778888999999999999999999999999998 478999999999985
No 78
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=1.8e-11 Score=109.85 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=94.2
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+........ . ....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~G~it~~dl~~~~~~~~~~~~-~-------~~~~------ 62 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-----GKLTGIVTRHDIVDFVVRDRDKAR-T-------GDRS------ 62 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-----CcEEEEEEHHHHHHHHhhhhhhcc-h-------hhhh------
Confidence 46788999999999999999999999999987 899999999999876532110000 0 0000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
.........+++++|+++++++.+++++.+++++|.+.+.+.+||+++ +++++++|+||++|+++
T Consensus 63 --------------~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~-~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 63 --------------GEKERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTP-DDDTKVVGILTKKDVLR 127 (128)
T ss_pred --------------hhhhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEecc-CCCCcEEEEEEhHhhhc
Confidence 000001123466788888899999999999999999999999999852 11588999999999985
No 79
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.31 E-value=2.3e-11 Score=105.35 Aligned_cols=100 Identities=43% Similarity=0.678 Sum_probs=87.3
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeC---CCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchh
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDE---PPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAH 543 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~---~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~ 543 (642)
++...+++++++.++.+.+.+.+++.+||+|+ + ++++|+++.+|+.+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-----~~~~G~v~~~dl~~~~~~--------------------- 55 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEES-----PRLVGYILRSQLVVALKN--------------------- 55 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCC-----CEEEEEEeHHHHHHHHHH---------------------
Confidence 35678899999999999999988899999998 5 899999999998753210
Q ss_pred hhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehh
Q 006517 544 DFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRH 623 (642)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~ 623 (642)
+|.+++.++++++++.+++++|.+++.+.+||++ +|+++|+||++
T Consensus 56 -------------------------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~----~~~~~Gvvt~~ 100 (105)
T cd04591 56 -------------------------------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD----EGRLVGIITRK 100 (105)
T ss_pred -------------------------------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE----CCeEEEEEEhh
Confidence 4566778999999999999999999999999996 68899999999
Q ss_pred hcch
Q 006517 624 DFMP 627 (642)
Q Consensus 624 Dll~ 627 (642)
|+++
T Consensus 101 dl~~ 104 (105)
T cd04591 101 DLLK 104 (105)
T ss_pred hhhc
Confidence 9985
No 80
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.31 E-value=1.1e-11 Score=107.75 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=89.0
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.+++.++++.++.+.|.+++++.+||+|++ ++++|+++.+|+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~------------------------- 51 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD-----GKLVGIVTNRDLRFETD------------------------- 51 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----CEEEEEEEhhHeeeccc-------------------------
Confidence 457788999999999999998899999999986 89999999998852100
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecC-CCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVE-TMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 625 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~-~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dl 625 (642)
...++.++|++.+..+.+ ++++.+++++|.+.+.+.+||+|+ +++++|+||++|+
T Consensus 52 ---------------------~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvi~~~di 107 (110)
T cd04601 52 ---------------------LDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD---EGKLKGLITVKDI 107 (110)
T ss_pred ---------------------CCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC---CCCEEEEEEhhhh
Confidence 012345567666666677 999999999999999999999997 7899999999999
Q ss_pred ch
Q 006517 626 MP 627 (642)
Q Consensus 626 l~ 627 (642)
++
T Consensus 108 l~ 109 (110)
T cd04601 108 EK 109 (110)
T ss_pred hc
Confidence 85
No 81
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.31 E-value=4.1e-12 Score=142.64 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=115.1
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccc----cccc----
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFT----KQKT---- 530 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~----~~~~---- 530 (642)
.+|+|+|.+++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.+.+.+.+.. ....
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-----GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 68999999999999999999999999999999999999987 8999999999999877653310 0000
Q ss_pred ---------c-CCccc---cccc-----chhhh---cccC-----CCC-------------------Cccc---------
Q 006517 531 ---------M-TGSDI---MRRF-----KAHDF---AKAG-----SGK-------------------GVKL--------- 556 (642)
Q Consensus 531 ---------~-~~~~~---~~~~-----~~~~~---~~~~-----~~~-------------------~~~~--------- 556 (642)
. .+++. ..+. ..+.+ .+.. .++ ...+
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence 0 00000 0000 00000 0000 000 0000
Q ss_pred ----------cccccchhhhhcccccccccc-cCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhc
Q 006517 557 ----------EDLDIKEEEMEMFVDLHPITN-TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 625 (642)
Q Consensus 557 ----------~~~~~~~~~~~~~~~l~~im~-~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dl 625 (642)
.|...+........+++++|+ +++.+++++++++++.++|.+.+.+++||+|+ +|+++|+||++|+
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~---~g~lvGiit~~dl 299 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE---DGKVVGVISRYHL 299 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC---CCCEEEEEEHHHh
Confidence 011111222334567899999 89999999999999999999999999999998 8999999999999
Q ss_pred chhHh
Q 006517 626 MPEHV 630 (642)
Q Consensus 626 l~~~~ 630 (642)
++...
T Consensus 300 ~~~~~ 304 (546)
T PRK14869 300 LSPVR 304 (546)
T ss_pred hcccc
Confidence 97544
No 82
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=2.9e-11 Score=105.70 Aligned_cols=110 Identities=22% Similarity=0.294 Sum_probs=90.8
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH-HHhccccccccccCCcccccccchhhhc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV-LLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++++|+.. .+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~i~~~~l~~~~~~~~~~--------------------- 54 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN------DRLVGIVTDRDIVVRAVAEGRD--------------------- 54 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------CEEEEEEEhHHHHHHHhhccCC---------------------
Confidence 5678999999999999999999999999987 79999999999863 2211000
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
....++.++|++++.++.++++++++++.|.+.+.+.+||+|+ +++++|+||++|++
T Consensus 55 --------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~it~~di~ 111 (113)
T cd04622 55 --------------------PDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD---DGRLVGIVSLGDLA 111 (113)
T ss_pred --------------------cccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC---CCcEEEEEEHHHhh
Confidence 0012356678888889999999999999999999999999986 68999999999997
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 112 ~ 112 (113)
T cd04622 112 R 112 (113)
T ss_pred c
Confidence 5
No 83
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.30 E-value=2.4e-11 Score=106.30 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=91.1
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.+++++++++++.+.|.+++.+.+||+|+ ++++|+++.+|+...+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~dl~~~~~~~~~~--------------------- 54 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG------NKLVGIFTSKDIALRVVAQGLD--------------------- 54 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC------CEEEEEEEhHHHHHHHHhcCCC---------------------
Confidence 5678899999999999998888889999986 7999999999997433221000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
....++.++|++++.++++++++.+++++|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 55 -------------------~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~---~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 55 -------------------PESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK---SGQVVGLLDVTKLTH 112 (113)
T ss_pred -------------------cCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC---CCCEEEEEEHHHhcc
Confidence 0012355677888889999999999999999999999999997 689999999999985
No 84
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.30 E-value=2.8e-11 Score=105.41 Aligned_cols=110 Identities=22% Similarity=0.307 Sum_probs=91.8
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.+++++++++++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~dl~~~~~~~~~--------------------- 53 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD------GRLVGIVTLADIRRVPAEGRE--------------------- 53 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC------CeEEEEEEHHHHHHHHhcCcc---------------------
Confidence 35778999999999999999888899999987 799999999999864432110
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
...++.+.|.+++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||++|++
T Consensus 54 ---------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~it~~di~ 109 (111)
T cd04612 54 ---------------------ATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD---SGRLVGIVSRSDLL 109 (111)
T ss_pred ---------------------cccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC---CCCEEEEEEHHHhh
Confidence 001234567778899999999999999999999999999996 68999999999997
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 110 ~ 110 (111)
T cd04612 110 R 110 (111)
T ss_pred h
Confidence 5
No 85
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.30 E-value=2.9e-11 Score=105.51 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=90.4
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++++++++++++++.+.|.+++++.+||+|+ ++++|+++.+|+.+.+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~v~~~~l~~~~~~~~~---------------------- 53 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG------DPRLGIVTRTDLLDAVLLDGL---------------------- 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC------CeEEEEEEHHHHHHHHHcCCC----------------------
Confidence 4678899999999999999888889999987 689999999999875532110
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
+...++.++|++++..+++++++.+++++|.+++.+.+||+| +++++|+||++|+++
T Consensus 54 -------------------~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~~~~G~it~~dl~~ 110 (111)
T cd04589 54 -------------------PSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE----GGEVVGVLEQTDLLS 110 (111)
T ss_pred -------------------CCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee----CCEEEEEEEhHHhhc
Confidence 001235567777888999999999999999999999999998 478999999999985
No 86
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.29 E-value=1.6e-11 Score=133.48 Aligned_cols=121 Identities=18% Similarity=0.282 Sum_probs=102.4
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccc
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIM 537 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~ 537 (642)
-.+.++.|.+++.+++++++++++.+.|.+++++.+||+|++ ...++++|+|+.+|+.....
T Consensus 79 Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~--~~~~~lvGIVt~rDL~~~~~---------------- 140 (450)
T TIGR01302 79 VKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDG--DMTGKLVGIITKRDIRFVKD---------------- 140 (450)
T ss_pred hccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCC--CCCCeEEEEEEHHHHhhhhc----------------
Confidence 346688899999999999999999999999999999999974 01159999999999963210
Q ss_pred cccchhhhcccCCCCCccccccccchhhhhcccccccccc-cCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCe
Q 006517 538 RRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITN-TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 616 (642)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~-~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~l 616 (642)
...+++++|+ ++++++++++++++++++|.+++.+.+||+|+ +|++
T Consensus 141 ------------------------------~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe---~G~l 187 (450)
T TIGR01302 141 ------------------------------KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK---NGEL 187 (450)
T ss_pred ------------------------------CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC---CCcE
Confidence 0123566787 48899999999999999999999999999998 8999
Q ss_pred EEEEehhhcchhH
Q 006517 617 VGILTRHDFMPEH 629 (642)
Q Consensus 617 vGIITr~Dll~~~ 629 (642)
+|+||++|+++..
T Consensus 188 vGiVT~~DIl~~~ 200 (450)
T TIGR01302 188 VGLITMKDIVKRR 200 (450)
T ss_pred EEEEEhHHhhhcc
Confidence 9999999999864
No 87
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.29 E-value=6.4e-11 Score=127.67 Aligned_cols=185 Identities=12% Similarity=0.129 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhccCCchhHHHHHHHHHHhhhhhccc-cccccccCCC
Q 006517 200 ADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSI---------INERGPIFKVLLVAAVSLLTSCCSYGL-PWLSHCIPCP 269 (642)
Q Consensus 200 ~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~~~~~~ 269 (642)
+.+...+++|+++|+.+.+|.+..+++++.+-. ....++|++.+.+.+++++++++.+.+ |+..
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~------ 76 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQ------ 76 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHccccc------
Confidence 456677899999999999999998887664311 122344566677777888877765433 2110
Q ss_pred CCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCc
Q 006517 270 SYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPS 349 (642)
Q Consensus 270 ~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~k~~~t~~t~g~g~~G 349 (642)
..+. | .++.++..-. + +..++.. ...|++.+.+++|+|.|.
T Consensus 77 ---------~~~~-g----------------------~~~vi~av~~-~--g~~~~~~----~~~k~~~~~l~igsG~S~ 117 (418)
T PRK01610 77 ---------QRPH-A----------------------PTDYMEALQT-D--GQFDYAA----SLVKSLASLLVVTSGSAI 117 (418)
T ss_pred ---------ccCC-C----------------------cHHHHHHHHc-C--CCCCccH----HHHHHHHHHHHHHcCCcc
Confidence 0010 0 0122222211 1 1222222 347999999999999999
Q ss_pred ccchhHHHHHHHHhhHHHHhhhcccCCChhHHHHHHhhhhhcccccchhhHhhHHHhh-cCCcc--cHHHHHHHHHHHHH
Q 006517 350 GLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLEL-TNNLL--MLPLVMLVLLISKT 426 (642)
Q Consensus 350 G~f~P~l~iGA~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~El-tg~~~--~l~p~~~~~~~a~~ 426 (642)
|...|+..+||++|..+++.++. ..+...+..+|++|.++++.|+|++++++.+|. .+++. .+.|+++++++++.
T Consensus 118 GrEGP~v~iGa~~g~~~~~~~~~--~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~ 195 (418)
T PRK01610 118 GREGAMILLAALAASCFAQRFTP--RQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALL 195 (418)
T ss_pred ccccHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999972 445678999999999999999999999999996 46554 58889999999999
Q ss_pred HHhhc
Q 006517 427 VADSF 431 (642)
Q Consensus 427 ~~~~~ 431 (642)
+++.+
T Consensus 196 v~~~~ 200 (418)
T PRK01610 196 TTNLL 200 (418)
T ss_pred HHHHH
Confidence 99876
No 88
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.29 E-value=1.6e-11 Score=134.25 Aligned_cols=117 Identities=14% Similarity=0.104 Sum_probs=97.8
Q ss_pred cccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchh
Q 006517 464 VVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAH 543 (642)
Q Consensus 464 iM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~ 543 (642)
.|.++++++++++++.++.+.|.+++++.+||+|++ ..+++++|+|+.+|+.....
T Consensus 105 gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~--~~~GklvGIVT~~DL~~v~~---------------------- 160 (505)
T PLN02274 105 GFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETG--TMGSKLLGYVTKRDWDFVND---------------------- 160 (505)
T ss_pred cccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCC--CcCCeEEEEEEHHHHhhccc----------------------
Confidence 377889999999999999999999999999999872 01279999999999963210
Q ss_pred hhcccCCCCCccccccccchhhhhcccccccccccC--CceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEe
Q 006517 544 DFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTS--PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILT 621 (642)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~--~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIIT 621 (642)
...+++++|+++ .+++++++++++++++|.+++.+.+||+|+ +++++|+||
T Consensus 161 ------------------------~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~---~g~LvGvIT 213 (505)
T PLN02274 161 ------------------------RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE---DGELVDLVT 213 (505)
T ss_pred ------------------------cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEE
Confidence 013456778766 679999999999999999999999999997 789999999
Q ss_pred hhhcchhHhh
Q 006517 622 RHDFMPEHVL 631 (642)
Q Consensus 622 r~Dll~~~~~ 631 (642)
++|+++....
T Consensus 214 r~DIlk~~~~ 223 (505)
T PLN02274 214 RTDVKRVKGY 223 (505)
T ss_pred HHHHHHHhhC
Confidence 9999985543
No 89
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.29 E-value=3e-11 Score=107.00 Aligned_cols=120 Identities=23% Similarity=0.284 Sum_probs=94.1
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++++|+.+.......... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~i~~~~l~~~~~~~~~~~~-------------~~---- 58 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR------GKLVGIVTDRDLKLASPSKATTLD-------------IW---- 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC------CeEEEEEeHHHHHHhhhccccccc-------------ch----
Confidence 5678999999999999999989999999987 799999999999875532110000 00
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
+.. ......++.++|++++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 59 ----------~~~----~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvvt~~di~~ 121 (122)
T cd04585 59 ----------ELY----YLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD---QGRLVGIITESDLFR 121 (122)
T ss_pred ----------hhh----hhhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC---CCcEEEEEEHHHhhh
Confidence 000 000123466788888999999999999999999999999999996 689999999999985
No 90
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=3.2e-11 Score=105.38 Aligned_cols=110 Identities=17% Similarity=0.229 Sum_probs=88.1
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++.+.++|.|+ ++++|+++.+|+.+.+.+... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~dl~~~~~~~~~--~------------------- 54 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER------GELVGLLTFREVLQAMAQHGA--G------------------- 54 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC------CEEEEEEEHHHHHHHHHhcCC--c-------------------
Confidence 4678899999999999998877766666554 899999999999875532100 0
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
....+++++|++.+.++++++++++++++|.+.+.+.+||+| +++++|+||++|+++
T Consensus 55 -------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~----~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 55 -------------------VLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD----GGTLLGVISFHDVAK 111 (112)
T ss_pred -------------------hhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE----CCEEEEEEEHHHhhc
Confidence 001235567777788999999999999999999999999998 578999999999985
No 91
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=2.2e-11 Score=105.01 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=87.8
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~Giv~~~~l~~~~~-------------------------- 49 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED------GKLVGIITSRDVRRAHP-------------------------- 49 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEehHHhhcccc--------------------------
Confidence 4677899999999999999888889999985 79999999999864210
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
..++.++|++++.++++++++.++++.|.+++.+.+||+| +++++|+||++|++.
T Consensus 50 ---------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~~~~G~it~~~l~~ 104 (105)
T cd04599 50 ---------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLR----ERKLVGIITKGTIAL 104 (105)
T ss_pred ---------------------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE----CCEEEEEEEHHHhcc
Confidence 0124456777888999999999999999999999999998 478999999999984
No 92
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=1.9e-11 Score=109.50 Aligned_cols=117 Identities=14% Similarity=0.139 Sum_probs=87.4
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+.+....+......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----~~~~Giv~~~dl~~~~~~~~~~~~~------------------ 58 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-----DNFIGVITAVDLLGEEPIKRIQEGG------------------ 58 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----CcEEEEEEHHHHhhChhhHHHHHcC------------------
Confidence 46788999999999999998888899999986 8999999999997521100000000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCcee------cCCCCHHHHHHHHHHcCCcEEEEeeCCCCC-CCeEEEE
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTV------VETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGIL 620 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v------~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~-g~lvGII 620 (642)
......+++++|++++..+ .+++++.++++.|.+++.+++||+|+ + |+++|+|
T Consensus 59 -----------------~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~---~~~~~~G~i 118 (126)
T cd04640 59 -----------------ISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR---EHHQIRGII 118 (126)
T ss_pred -----------------CCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC---CCCEEEEEE
Confidence 0000123556776554333 36899999999999999999999997 5 7899999
Q ss_pred ehhhcch
Q 006517 621 TRHDFMP 627 (642)
Q Consensus 621 Tr~Dll~ 627 (642)
|++|+++
T Consensus 119 t~~di~~ 125 (126)
T cd04640 119 STSDIAR 125 (126)
T ss_pred eHHHHhh
Confidence 9999985
No 93
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.28 E-value=3.6e-11 Score=104.83 Aligned_cols=109 Identities=21% Similarity=0.287 Sum_probs=89.4
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.+++++++++++.+.|.+.+++.+||+|++ +++++|+++..|+.+...+...
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~----~~~~~G~v~~~~l~~~~~~~~~---------------------- 55 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD----LDNIIGVVHVKDLLRALAEGEE---------------------- 55 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC----CceEEEEEEHHHHHHHHHcCCC----------------------
Confidence 57889999999999999999888999999873 1699999999999876543110
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
..++++++ +++.++++++++.+++++|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 56 ---------------------~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvit~~di~~ 110 (111)
T cd04590 56 ---------------------DLDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE---YGGTAGLVTLEDILE 110 (111)
T ss_pred ---------------------cCCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC---CCCEEEEeEHHHhhc
Confidence 01122334 35678899999999999999999999999997 789999999999985
No 94
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.28 E-value=1.3e-11 Score=125.93 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=98.3
Q ss_pred cccccccccCC-eEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCccc
Q 006517 458 NLVASDVVSGP-LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDI 536 (642)
Q Consensus 458 ~~~V~diM~~~-~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~ 536 (642)
.++|+|+|.++ +.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.+..
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-----g~~~Givt~~dl~~~~~~~~------------ 216 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-----NQLVGVFTDGDLRRALLGGG------------ 216 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-----CCEEEEEEcHHHHHHHhcCC------------
Confidence 47999999998 9999999999999999999899999999987 89999999999987543210
Q ss_pred ccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCe
Q 006517 537 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPI 616 (642)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~l 616 (642)
+...+++++|.+++.++++++++.+++++|.+.+.+.+||+|+ +|++
T Consensus 217 ------------------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~l 263 (268)
T TIGR00393 217 ------------------------------SLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD---HNKV 263 (268)
T ss_pred ------------------------------cccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC---CCeE
Confidence 0012356788888889999999999999999999999999997 7899
Q ss_pred EEEEe
Q 006517 617 VGILT 621 (642)
Q Consensus 617 vGIIT 621 (642)
+|+|+
T Consensus 264 ~GvI~ 268 (268)
T TIGR00393 264 LGVLH 268 (268)
T ss_pred EEEEC
Confidence 99985
No 95
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.28 E-value=6.3e-11 Score=126.51 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcccCCChhHHHHHHhhhhhcccccchhhHhhHHHhhc--CC
Q 006517 333 VAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELT--NN 410 (642)
Q Consensus 333 ~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~Elt--g~ 410 (642)
..|++.+.+|+++|.|+|.+.|+..+|+++|..+++.++.. ..+...+..+||+|.++++.|+|++++++.+|++ ++
T Consensus 79 ~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~~-~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~ 157 (378)
T cd03682 79 PLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKLP-EEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLGR 157 (378)
T ss_pred HHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhh
Confidence 46999999999999999999999999999999999988531 2234568999999999999999999999999987 44
Q ss_pred c--ccHHHHHHHHHHHHHHHhhc
Q 006517 411 L--LMLPLVMLVLLISKTVADSF 431 (642)
Q Consensus 411 ~--~~l~p~~~~~~~a~~~~~~~ 431 (642)
+ ..+.|.++++++++.+++.+
T Consensus 158 ~~~~~~~~~~i~~~~a~~v~~~~ 180 (378)
T cd03682 158 LRYSALIPCLVAAIVADWVSHAL 180 (378)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 3 46888999999999998765
No 96
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=4.4e-11 Score=104.46 Aligned_cols=110 Identities=21% Similarity=0.261 Sum_probs=90.5
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++..|+.+.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~dl~~~~~~~~~~--------------------- 54 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN------EKPVGIITERDLVKKVVSRNLK--------------------- 54 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC------CEEEEEEEHHHHHHHHhhccCC---------------------
Confidence 5678899999999999999988999999996 6999999999998755321100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
.....+.++|++++.++.+++++.+++++|.+.+.+.+||+|+ + +++|+||++|+++
T Consensus 55 -------------------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~-~~~Gvi~~~di~~ 111 (112)
T cd04802 55 -------------------PREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD---D-ELVGIVTTTDIVM 111 (112)
T ss_pred -------------------cccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC---C-EEEEEEEhhhhhc
Confidence 0012345677778889999999999999999999999999985 4 8999999999974
No 97
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=2.8e-11 Score=107.51 Aligned_cols=120 Identities=17% Similarity=0.271 Sum_probs=94.1
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.+++++++++++.+.|.+++++.+||+|+ ++++|+++.+|+.+.+.+.. .... + ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~v~~~~l~~~~~~~~-~~~~----~------~~----- 59 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED------NELVGVISDRDYLKAISPFL-GTAG----E------TE----- 59 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC------CeEEEEEEHHHHHHHHHHHh-cccc----c------hH-----
Confidence 5678999999999999999999999999996 79999999999987654210 0000 0 00
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
+ +......++.++|.++++++++++++.++++.|.+.+.+.+||+|+ +++++|++|++|+++
T Consensus 60 ---------~------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~---~~~~~Gvit~~dll~ 121 (122)
T cd04637 60 ---------K------DLATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE---NGQLIGIITWKDLLK 121 (122)
T ss_pred ---------H------HHHHHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC---CCCEEEEEEHHHhhh
Confidence 0 0000112466778888999999999999999999999999999987 789999999999985
No 98
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.27 E-value=2.2e-11 Score=133.96 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=101.7
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCccccc
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMR 538 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~ 538 (642)
..++|+|.+++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.....
T Consensus 87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-----g~lvGiVt~~DL~~~~~----------------- 144 (486)
T PRK05567 87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDEN-----GKLVGIITNRDVRFETD----------------- 144 (486)
T ss_pred hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-----CEEEEEEEHHHhhhccc-----------------
Confidence 35678999999999999999999999999999999999987 89999999999853110
Q ss_pred ccchhhhcccCCCCCccccccccchhhhhcccccccccc-cCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeE
Q 006517 539 RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITN-TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIV 617 (642)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~-~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lv 617 (642)
...+++++|+ ++++++++++++.+++++|.+.+.+.+||+|+ +++++
T Consensus 145 -----------------------------~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---~g~lv 192 (486)
T PRK05567 145 -----------------------------LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---NGRLK 192 (486)
T ss_pred -----------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCcEE
Confidence 0123556777 67889999999999999999999999999998 88999
Q ss_pred EEEehhhcchhH
Q 006517 618 GILTRHDFMPEH 629 (642)
Q Consensus 618 GIITr~Dll~~~ 629 (642)
|+||++|+++..
T Consensus 193 GiIT~~DLl~~~ 204 (486)
T PRK05567 193 GLITVKDIEKAE 204 (486)
T ss_pred EEEEhHHhhhhh
Confidence 999999999764
No 99
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=3.1e-11 Score=104.40 Aligned_cols=105 Identities=27% Similarity=0.394 Sum_probs=89.4
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.+++.+++++++.+.|.+.+++.+||+|+ ++++|+++..|+... . .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~------~~~~g~v~~~~l~~~--~-~---------------------- 50 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN------GKVVGIVSARDLLGK--D-P---------------------- 50 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEHHHhhcc--C-c----------------------
Confidence 46778999999999999998888888999986 799999999998631 0 0
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
..+++++|.+.+.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||++|++
T Consensus 51 ----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g~~~Gvi~~~di~ 105 (107)
T cd04610 51 ----------------------DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE---NNNLVGIITNTDVI 105 (107)
T ss_pred ----------------------cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC---CCeEEEEEEHHHhh
Confidence 01345677777889999999999999999999999999997 78999999999998
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 106 ~ 106 (107)
T cd04610 106 R 106 (107)
T ss_pred c
Confidence 5
No 100
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.27 E-value=6e-11 Score=104.32 Aligned_cols=114 Identities=22% Similarity=0.326 Sum_probs=97.0
Q ss_pred cccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccc
Q 006517 462 SDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFK 541 (642)
Q Consensus 462 ~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~ 541 (642)
.++|.+++.++.++.++.++...|.++++..+||+++ .+++|++|.+|+.+.+......
T Consensus 2 ~~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~------~~l~Giit~~di~~~~~~~~~~--------------- 60 (117)
T COG0517 2 KDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD------GKLVGIITERDILRALAAGGKR--------------- 60 (117)
T ss_pred cccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------CEEEEEEEHHHHHHHHhccCCc---------------
Confidence 3456688999999999999999999999999999987 5899999999999877542100
Q ss_pred hhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHH-cCCcEEEEeeCCCCCC-CeEEE
Q 006517 542 AHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQ-LALRHLCVVPKTPGRP-PIVGI 619 (642)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~-~~~~~lpVvd~~~~~g-~lvGI 619 (642)
..++.++|++++.++.+++++.++.++|.+ .+.+.+||+|+ ++ +++|+
T Consensus 61 ---------------------------~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~---~~~~lvGi 110 (117)
T COG0517 61 ---------------------------LLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD---DGGKLVGI 110 (117)
T ss_pred ---------------------------cccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC---CCCeEEEE
Confidence 003566787788999999999999999999 69999999997 64 99999
Q ss_pred Eehhhcc
Q 006517 620 LTRHDFM 626 (642)
Q Consensus 620 ITr~Dll 626 (642)
+|++|++
T Consensus 111 vt~~di~ 117 (117)
T COG0517 111 ITLSDIL 117 (117)
T ss_pred EEHHHcC
Confidence 9999974
No 101
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.25 E-value=4.9e-11 Score=103.56 Aligned_cols=109 Identities=20% Similarity=0.276 Sum_probs=88.0
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+.+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~dl~~~~~~~~~~--------------------- 54 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------GRVVGSIDESDLLDALIEGKAK--------------------- 54 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------CeeEEEEeHHHHHHHHhccccc---------------------
Confidence 4678899999999999999999999999987 7999999999998765431100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
...++.++|++++.++++++++.++.++|.+ . ..+||+|+ +++++|+||++|+++
T Consensus 55 --------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~---~~~~~Gvvt~~di~~ 109 (110)
T cd04609 55 --------------------FSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE---GGKFVGIITRADLLK 109 (110)
T ss_pred --------------------cCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec---CCeEEEEEeHHHhhc
Confidence 0123455677778899999999999999998 3 34789987 789999999999986
Q ss_pred h
Q 006517 628 E 628 (642)
Q Consensus 628 ~ 628 (642)
+
T Consensus 110 ~ 110 (110)
T cd04609 110 Y 110 (110)
T ss_pred C
Confidence 3
No 102
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=2.5e-11 Score=105.69 Aligned_cols=102 Identities=26% Similarity=0.261 Sum_probs=85.0
Q ss_pred ecCcccHHHHHHHHhhCC-----CCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 472 FSGVEKVGNIMHALRLTR-----HNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 472 v~~~~tv~~~~~~l~~~~-----~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++++++.++.+.|.+++ +..+||+|++ ++++|+++.+|+.+. . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----~~~~G~v~~~~l~~~--~-~---------------------- 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-----GRLLGVVSLRDLLLA--D-P---------------------- 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-----CCEEEEEEHHHHhcC--C-C----------------------
Confidence 578899999999998776 3679999986 899999999988631 0 0
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
..++.++|++++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||++|++
T Consensus 52 ----------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvit~~dll 106 (109)
T cd04606 52 ----------------------DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE---EGRLVGIITVDDVI 106 (109)
T ss_pred ----------------------cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC---CCcEEEEEEhHHhh
Confidence 02245567777889999999999999999999999999997 78999999999998
Q ss_pred hh
Q 006517 627 PE 628 (642)
Q Consensus 627 ~~ 628 (642)
+.
T Consensus 107 ~~ 108 (109)
T cd04606 107 DV 108 (109)
T ss_pred hh
Confidence 64
No 103
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.25 E-value=6.3e-11 Score=102.25 Aligned_cols=100 Identities=18% Similarity=0.085 Sum_probs=85.6
Q ss_pred EEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcccC
Q 006517 470 ITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAG 549 (642)
Q Consensus 470 ~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (642)
.+++++++++++.+.+.+.+++.+||+|+ ++++|+++.+|+.+...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~v~~~~l~~~~~---------------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY------NKFLGAVYLKDIENATY---------------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC------CEEEEEEEHHHHhhhcc----------------------------
Confidence 46789999999999999999999999986 79999999999864210
Q ss_pred CCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 550 SGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
.++.++|.+.+.+++++++++++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 50 --------------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~----~~~~iGvit~~dl~~ 103 (104)
T cd04594 50 --------------------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD----DGKFKGIVTLDSILD 103 (104)
T ss_pred --------------------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE----CCEEEEEEEHHHhhc
Confidence 113446667788999999999999999999999999998 578999999999875
No 104
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.24 E-value=9e-11 Score=101.68 Aligned_cols=111 Identities=28% Similarity=0.391 Sum_probs=92.3
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.+++.++++.++.+.|.+++++.+||+|++ ++++|+++++|+.+.+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~G~v~~~~l~~~~~~~~~~~-------------------- 56 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-----GRLVGIVTERDLLRALAEGGLDP-------------------- 56 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-----CCEEEEEeHHHHHHHHHhccCCc--------------------
Confidence 46788999999999999999888999999986 89999999999987654321000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
...+.++|..++.++.+++++.++++.|.+.+.+.+||+|+ +++++|++|++|+++
T Consensus 57 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~i~~~dl~~ 112 (113)
T cd02205 57 ---------------------LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD---EGRLVGIVTRSDILR 112 (113)
T ss_pred ---------------------cccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEEHHHhhc
Confidence 01134566677888999999999999999999999999997 799999999999975
No 105
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.24 E-value=1.9e-11 Score=128.87 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=109.9
Q ss_pred cccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcc
Q 006517 456 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 535 (642)
Q Consensus 456 l~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~ 535 (642)
+-..+++++|+.+++++++..++.++.+.|.+.+.+...++|++ +...|+||++|+......+
T Consensus 146 ~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-----~~~~GIvT~~dl~~~v~~~------------ 208 (610)
T COG2905 146 FILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-----GPLLGIVTRKDLRSRVIAD------------ 208 (610)
T ss_pred HHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-----CCccceeehHHHHHHHHhc------------
Confidence 33468899999999999999999999999999999988888877 8999999999998765431
Q ss_pred cccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCC
Q 006517 536 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 615 (642)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~ 615 (642)
..+...+++++|+.++++|.+.+.+.||+-+|.+++++|+||++ +|+
T Consensus 209 -----------------------------g~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e----~gq 255 (610)
T COG2905 209 -----------------------------GRSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE----DGQ 255 (610)
T ss_pred -----------------------------CCCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec----CCe
Confidence 11234568889999999999999999999999999999999998 689
Q ss_pred eEEEEehhhcchhHh
Q 006517 616 IVGILTRHDFMPEHV 630 (642)
Q Consensus 616 lvGIITr~Dll~~~~ 630 (642)
++|+||..||++...
T Consensus 256 ~~Gilt~~dIl~l~s 270 (610)
T COG2905 256 PLGILTLTDILRLFS 270 (610)
T ss_pred eeEEeeHHHHHHhhC
Confidence 999999999997555
No 106
>PRK11573 hypothetical protein; Provisional
Probab=99.23 E-value=6.5e-11 Score=127.17 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=108.0
Q ss_pred cccccccccccC--CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCC
Q 006517 456 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 533 (642)
Q Consensus 456 l~~~~V~diM~~--~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~ 533 (642)
+++.+|+|+|+| ++.+++.+++++++.+.+.+++|+.+||.+++ .+.++|+++.+|++..+.++. .
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~----~D~IiGiv~~kDll~~~~~~~---~----- 251 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS----LDDAISMLRVREAYRLMTEKK---E----- 251 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC----CCceEEEEEHHHHHHHhhccC---c-----
Confidence 678899999998 79999999999999999999999999999864 378999999999986443210 0
Q ss_pred cccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCC
Q 006517 534 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 613 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~ 613 (642)
... .++.+++ +++.+|++++++.++++.|++.+.+-..|+|+ .
T Consensus 252 ------~~~---------------------------~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---y 294 (413)
T PRK11573 252 ------FTK---------------------------ENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---Y 294 (413)
T ss_pred ------CCH---------------------------HHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---C
Confidence 000 0122233 46789999999999999999999999999998 8
Q ss_pred CCeEEEEehhhcchhHhhccCcc
Q 006517 614 PPIVGILTRHDFMPEHVLGLYPH 636 (642)
Q Consensus 614 g~lvGIITr~Dll~~~~~~~~~~ 636 (642)
|...|+||.+|++++..-+...+
T Consensus 295 G~~~GiVTleDilEeivGei~de 317 (413)
T PRK11573 295 GDIQGLVTVEDILEEIVGDFTTS 317 (413)
T ss_pred CCeEEEeeHHHHHHHHhCCCCcc
Confidence 89999999999999888665544
No 107
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=7.4e-11 Score=104.57 Aligned_cols=119 Identities=23% Similarity=0.284 Sum_probs=92.6
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+.+........ . . .
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~------~~~~G~v~~~~l~~~~~~~~~~~~-~----------~--~--- 59 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG------GKLVGIVTEKDIADALRSFRPLVR-D----------R--H--- 59 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC------CEEEEEEchHHHHHhhhhhhhccc-c----------h--h---
Confidence 5678999999999999999888999999986 799999999999875542110000 0 0 0
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
.+......++.++|++++.++++++++.+++++|.+.+.+.+||+| +++++|+||++|+++
T Consensus 60 ---------------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~~~~Gvi~~~dl~~ 120 (121)
T cd04633 60 ---------------QERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD----DGKLVGIVTRTDILR 120 (121)
T ss_pred ---------------hhhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEE----CCEEEEEEEHHHhhc
Confidence 0000012345667888889999999999999999999999999998 478999999999985
No 108
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.22 E-value=1.3e-10 Score=126.97 Aligned_cols=186 Identities=14% Similarity=0.125 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hccCCchhH----HHHHHHHHHhhhhhc-cccccccccCC
Q 006517 199 SADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSII-----NERGPIFKV----LLVAAVSLLTSCCSY-GLPWLSHCIPC 268 (642)
Q Consensus 199 ~~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~l~~~~~~~-~~p~~~~~~~~ 268 (642)
...|...+++|+++|+++.+|.++..++++++... .......++ ..+++.+++.+++.. +.|+.
T Consensus 30 ~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a------ 103 (466)
T cd03685 30 FLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTA------ 103 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCccc------
Confidence 45566779999999999999999999988775322 111111111 234444555555433 33433
Q ss_pred CCCCcCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCC-CcchhHHHHHHHHHHHHHHHHHHhcCCC
Q 006517 269 PSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGT-SKEFHLSTLLVFFVAIYCLGIITYGIAV 347 (642)
Q Consensus 269 ~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~ll~~~~~k~~~t~~t~g~g~ 347 (642)
.|. | . ..++..+++.. +...++. -++.|++.+.+++|+|.
T Consensus 104 -----------~Gs-G-----------i------------p~v~~~l~g~~~~~~l~~r----~~~~K~i~~~l~vgsG~ 144 (466)
T cd03685 104 -----------AGS-G-----------I------------PEVKGYLNGVKIPHILRLK----TLLVKIVGVILSVSGGL 144 (466)
T ss_pred -----------CCC-C-----------H------------HHHHHHHcCcCccccchHH----HHHHHHHHHHHHHhcCC
Confidence 121 1 1 11333332211 1111222 23579999999999999
Q ss_pred CcccchhHHHHHHHHhhHHHHhhh-----------cc-cCCChhHHHHHHhhhhhcccccchhhHhhHHHhhcC-Cc--c
Q 006517 348 PSGLFIPVILAGASYGRLVGNLLG-----------AL-SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTN-NL--L 412 (642)
Q Consensus 348 ~GG~f~P~l~iGA~~G~~~g~~~~-----------~~-~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~Eltg-~~--~ 412 (642)
|.|.+.|+..+||++|..+++... .. ...+...+..+||||.+|++.++|++++++.+|.++ .+ +
T Consensus 145 s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~ 224 (466)
T cd03685 145 ALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQA 224 (466)
T ss_pred CCCCCCCcchHHHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchh
Confidence 999999999999999999997431 10 123445689999999999999999999999999775 22 3
Q ss_pred cHHHHHHHHHHHHHHHh
Q 006517 413 MLPLVMLVLLISKTVAD 429 (642)
Q Consensus 413 ~l~p~~~~~~~a~~~~~ 429 (642)
...+.++++++|..+++
T Consensus 225 ~~~~~l~~s~ias~va~ 241 (466)
T cd03685 225 LTWRTFFSSMIVTFTLN 241 (466)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666666654
No 109
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.20 E-value=1.2e-10 Score=103.14 Aligned_cols=119 Identities=23% Similarity=0.315 Sum_probs=92.9
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+|+.+...... .....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~~~~-~~~~~----------------- 58 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-----GRLVGIVTDRDLRDASPSPF-TTLSE----------------- 58 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-----CcEEEEEEHHHHHHHhhhhc-ccchh-----------------
Confidence 46788999999999999999999999999987 89999999999976443210 00000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
.+. ......+++++|++.+.++++++++++++++|.+.+...+||+| +++++|++|.+|+++
T Consensus 59 ---------~~~-----~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~----~~~~~Gvv~~~di~~ 120 (121)
T cd04584 59 ---------HEL-----YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE----DGRLVGIITETDLLR 120 (121)
T ss_pred ---------hhh-----hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee----CCEEEEEEEHHHhhc
Confidence 000 00112346677888889999999999999999999999999998 478999999999985
No 110
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=2e-10 Score=99.25 Aligned_cols=104 Identities=24% Similarity=0.326 Sum_probs=87.5
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.+++.++++.++.+.+.+.+++.+||+|++ ++++|+++.+++.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~g~v~~~~l~~~~~-------------------------- 50 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-----GELVGIITRKDLLRNPE-------------------------- 50 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-----CcEEEEEEHHHHHhccc--------------------------
Confidence 46788899999999999998888999999986 89999999999863100
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
..++.++|++++.++.+++++++++++|.+.+.+.+||+| +++++|+||++|+++
T Consensus 51 ---------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd----~~~~~G~it~~d~~~ 105 (106)
T cd04638 51 ---------------------EEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD----DGKLVGIVTVADIVR 105 (106)
T ss_pred ---------------------cchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE----CCEEEEEEEHHHhhc
Confidence 0123456677888999999999999999999999999998 468999999999875
No 111
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.16 E-value=2.4e-10 Score=100.96 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=89.1
Q ss_pred CeEEecCcccHHHHHHHHhhCC-CCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 468 PLITFSGVEKVGNIMHALRLTR-HNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~-~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
++.++++++++.++.+.|.+.+ ++.+||+|+ ++++|+++.+|+.+.+.+... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~------~~~~G~v~~~~l~~~~~~~~~-~------------------- 55 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD------GRPVGLIMREALMELLSTPYG-R------------------- 55 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC------CeeEEEEEHHHHHHHHhchhh-H-------------------
Confidence 4567899999999999998776 889999987 799999999999865542100 0
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCc---EEEEeeCCCCCCCeEEEEehh
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALR---HLCVVPKTPGRPPIVGILTRH 623 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~---~lpVvd~~~~~g~lvGIITr~ 623 (642)
......++.++|++++.++.+++++.++++.|.+.+.+ ..+|+++ +|+++|+||++
T Consensus 56 ------------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~---~~~~~Gvvs~~ 114 (119)
T cd04598 56 ------------------ALYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE---EGRYLGIGTVK 114 (119)
T ss_pred ------------------HHHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee---CCeEEEEEEHH
Confidence 00011245678888899999999999999999988864 3468887 78999999999
Q ss_pred hcch
Q 006517 624 DFMP 627 (642)
Q Consensus 624 Dll~ 627 (642)
|+++
T Consensus 115 di~~ 118 (119)
T cd04598 115 DLLR 118 (119)
T ss_pred HHhc
Confidence 9985
No 112
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=3e-10 Score=104.29 Aligned_cols=142 Identities=23% Similarity=0.276 Sum_probs=96.0
Q ss_pred CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhc
Q 006517 467 GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546 (642)
Q Consensus 467 ~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (642)
+++.++++++++.++.+.|.+++++.+||+|+ ++++|+++++|+.+.+............+..........++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFI 74 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC------CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhee
Confidence 35778999999999999999999999999986 799999999999887653221000000000000000000000
Q ss_pred ccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcc
Q 006517 547 KAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll 626 (642)
..++..... ......++.++|++++.++++++++.++++.|.+.+.+.+||++ +++++|+||++|++
T Consensus 75 --------~~~~~~~~~-~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~----~~~~~Gvvt~~dl~ 141 (143)
T cd04634 75 --------NWEETKRAL-TDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE----DGRLVGIVTRGDII 141 (143)
T ss_pred --------ehHHHHHHH-HHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE----CCEEEEEEEHHHhh
Confidence 000000000 00012356678888899999999999999999999999999998 47899999999987
Q ss_pred h
Q 006517 627 P 627 (642)
Q Consensus 627 ~ 627 (642)
+
T Consensus 142 ~ 142 (143)
T cd04634 142 E 142 (143)
T ss_pred c
Confidence 4
No 113
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.12 E-value=5e-10 Score=121.48 Aligned_cols=132 Identities=20% Similarity=0.282 Sum_probs=109.5
Q ss_pred ccccccccccccC--CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccC
Q 006517 455 YMKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 532 (642)
Q Consensus 455 ~l~~~~V~diM~~--~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~ 532 (642)
.+++.+|+++|+| ++..++.+.+++++.+.+.+++|+.+||+|++ .+.++|+++.+|++....+... .
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~----~D~iiGiv~~Kdll~~~~~~~~--~---- 271 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD----LDNIIGIVHVKDLLRALLDGQS--D---- 271 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----CCcEEEEEEHHHHHHHHhcCcc--c----
Confidence 3678899999998 79999999999999999999999999999943 3899999999999976654210 0
Q ss_pred CcccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCC
Q 006517 533 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPG 612 (642)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~ 612 (642)
.+.+..+ ++|+.|++.+++.++++.|++.+.+-..|+||
T Consensus 272 -------------------------------------~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE--- 310 (429)
T COG1253 272 -------------------------------------LDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE--- 310 (429)
T ss_pred -------------------------------------cchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---
Confidence 0001111 27889999999999999999999999999998
Q ss_pred CCCeEEEEehhhcchhHhhccCccc
Q 006517 613 RPPIVGILTRHDFMPEHVLGLYPHI 637 (642)
Q Consensus 613 ~g~lvGIITr~Dll~~~~~~~~~~~ 637 (642)
.|.+.|+||.+|++++..-+...+.
T Consensus 311 yG~~~GlVTleDIiEeIvGei~de~ 335 (429)
T COG1253 311 YGGVEGLVTLEDIIEEIVGEIPDEH 335 (429)
T ss_pred CCCeEEEeEHHHHHHHHhCCCcCcc
Confidence 8999999999999998887665443
No 114
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.09 E-value=1.8e-10 Score=122.94 Aligned_cols=125 Identities=20% Similarity=0.195 Sum_probs=106.6
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhC-----CCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccC
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLT-----RHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 532 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~-----~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~ 532 (642)
.-+++.+|++++++++++.|++++++.+++. ....+.|+|++ ++++|+++.++++.. +
T Consensus 131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-----~~L~Gvvsl~~Ll~a--~---------- 193 (451)
T COG2239 131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-----GKLLGVVSLRDLLTA--E---------- 193 (451)
T ss_pred hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-----cceEEEeeHHHHhcC--C----------
Confidence 4578999999999999999999999999854 34578899997 899999999998621 0
Q ss_pred CcccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCC
Q 006517 533 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPG 612 (642)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~ 612 (642)
....++++|.+.+.++.++++.+++.++|++++.-.+||||+
T Consensus 194 -----------------------------------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~--- 235 (451)
T COG2239 194 -----------------------------------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE--- 235 (451)
T ss_pred -----------------------------------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECC---
Confidence 023467789888999999999999999999999999999998
Q ss_pred CCCeEEEEehhhcchhHhhccCccc
Q 006517 613 RPPIVGILTRHDFMPEHVLGLYPHI 637 (642)
Q Consensus 613 ~g~lvGIITr~Dll~~~~~~~~~~~ 637 (642)
+++++|+||.+|+++...++.-+++
T Consensus 236 ~~~LiG~itiDDiidvi~eEa~eDi 260 (451)
T COG2239 236 DNRLIGIITIDDIIDVIEEEATEDI 260 (451)
T ss_pred CCceeeeeeHHHHHHHHHHHHHHHH
Confidence 8999999999999987776655443
No 115
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.07 E-value=4.5e-10 Score=113.06 Aligned_cols=131 Identities=25% Similarity=0.328 Sum_probs=109.4
Q ss_pred ccccccccccccC--CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccC
Q 006517 455 YMKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 532 (642)
Q Consensus 455 ~l~~~~V~diM~~--~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~ 532 (642)
.+++++|+|+|.+ ++..++.+++.+++++.+.++.|+.+|+..++ .+..+|+++.+|+++++.++..
T Consensus 196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~----~DnIiGvlh~r~llr~l~e~~~------- 264 (423)
T COG4536 196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD----LDNIIGVLHVRDLLRLLNEKNE------- 264 (423)
T ss_pred ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC----hhHhhhhhhHHHHHHHhhccCc-------
Confidence 3789999999998 69999999999999999999999999999775 2679999999999998876431
Q ss_pred CcccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCC
Q 006517 533 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPG 612 (642)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~ 612 (642)
++-.|+.+. -.+|++|++.+++++-+..|++++-+.-.||||
T Consensus 265 -------~~k~d~~~~----------------------------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE--- 306 (423)
T COG4536 265 -------FTKEDILRA----------------------------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE--- 306 (423)
T ss_pred -------ccHhHHHHH----------------------------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---
Confidence 111111111 247899999999999999999999999999999
Q ss_pred CCCeEEEEehhhcchhHhhccC
Q 006517 613 RPPIVGILTRHDFMPEHVLGLY 634 (642)
Q Consensus 613 ~g~lvGIITr~Dll~~~~~~~~ 634 (642)
-|.+.|+||.+|++++..-+..
T Consensus 307 YG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 307 YGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred cCcEEeeeeHHHHHHHHhcccc
Confidence 8999999999999987765443
No 116
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.04 E-value=1.4e-09 Score=117.58 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcc------------cCCChhHHHHHHhhhhhcccccchhh
Q 006517 332 FVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL------------SDLDTGLFALLGAASFLGGTMRMTVS 399 (642)
Q Consensus 332 ~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~------------~~~~~~~~alvG~aa~~ag~~~~pls 399 (642)
++.|++.+.+++|+|.|.|...|+..+||++|..+++.++.. ...+...+..+|++|.++++.++|++
T Consensus 88 ~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APia 167 (416)
T cd01036 88 LIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIG 167 (416)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcce
Confidence 457999999999999999999999999999999999976421 12345678999999999999999999
Q ss_pred HhhHHHhhcC-Cc--ccHHHHHHHHHHHHHHHhhc
Q 006517 400 LCVILLELTN-NL--LMLPLVMLVLLISKTVADSF 431 (642)
Q Consensus 400 ~~vi~~Eltg-~~--~~l~p~~~~~~~a~~~~~~~ 431 (642)
++++.+|.+. ++ ..+.+.+++++++..+++.+
T Consensus 168 GvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 168 GLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred eeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999774 33 35788899999999988765
No 117
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.04 E-value=1.4e-09 Score=98.53 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=79.8
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+.+.+...+...... ..+.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-----g~l~Givt~~Dl~~~~~~~~~~~~~~-----------~~~~-- 63 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-----DFLEGILTLGDIQRFLFTNKTTRVQP-----------EDET-- 63 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-----CeEEEEEEHHHHHHHHhhcccccccc-----------chhh--
Confidence 57889999999999999998899999999987 89999999999998765422110000 0000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeC
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPK 609 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~ 609 (642)
.+.+...+.+ ......+.+.|..+++++++++++.+++++|.+++.+++||+|+
T Consensus 64 -~~~~~~~v~~-------i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 64 -KQTNTCLVSS-------VCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred -cccccccHHH-------HhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 0000000000 00000122234567889999999999999999999999999987
No 118
>PRK03655 putative ion channel protein; Provisional
Probab=99.04 E-value=9.6e-09 Score=110.33 Aligned_cols=179 Identities=10% Similarity=0.087 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------ccCCchhHHHHHHHHHHhhhhhccccccccccCCCCCC
Q 006517 200 ADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIIN-------ERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYL 272 (642)
Q Consensus 200 ~~l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~ 272 (642)
.-+...+++|+++|+.+.+|.++.++.++++.... ...++|.++.+.++|++++.+....|.-
T Consensus 11 ~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~~~---------- 80 (414)
T PRK03655 11 LLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSPGH---------- 80 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcCCC----------
Confidence 44567889999999999999999999888764211 1223455555667778777764333211
Q ss_pred cCCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006517 273 EADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLF 352 (642)
Q Consensus 273 ~~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f 352 (642)
+ | .... ++.. ... .... -....|++.+.+++++|.+-|..
T Consensus 81 --------~--G----------~~~~------------~~~~-~~~---~~~~----~~~~~~~~~~~l~l~~G~S~GrE 120 (414)
T PRK03655 81 --------A--G----------PDPA------------TEPL-IGA---PVPP----SALPGLLLALILGLAGGVSLGPE 120 (414)
T ss_pred --------C--C----------ChHH------------HHHH-hcC---CCCc----cHHHHHHHHHHHHHhcCCCCCch
Confidence 1 1 1000 1111 111 1111 12346889999999999999999
Q ss_pred hhHHHHHHHHhhHHHHhhhcccCCChhHHHHHHhhhhhcccccchhhHhhHHHhh-cCCcc------cHHHHHHHHHHHH
Q 006517 353 IPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLEL-TNNLL------MLPLVMLVLLISK 425 (642)
Q Consensus 353 ~P~l~iGA~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~El-tg~~~------~l~p~~~~~~~a~ 425 (642)
.|+..+||++|..+++.+.. ..+.....++|+||.+|++.|+|++.+++.+|. .+++. .++|+ ++++++.
T Consensus 121 GP~VqiGa~igs~~~r~~~~--~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v-~aa~~a~ 197 (414)
T PRK03655 121 HPIMTVNIALAVAIGARLLP--RVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPL-MAAAAGA 197 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHH
Confidence 99999999999999987732 234445778999999999999999999999995 56554 35554 4555577
Q ss_pred HHHhhc
Q 006517 426 TVADSF 431 (642)
Q Consensus 426 ~~~~~~ 431 (642)
.+++.+
T Consensus 198 ~v~~~~ 203 (414)
T PRK03655 198 LTTGLF 203 (414)
T ss_pred HHHHHh
Confidence 666544
No 119
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.03 E-value=1.8e-09 Score=116.88 Aligned_cols=184 Identities=14% Similarity=0.125 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---CCch----hHHHHHHHHHHhhhhh-ccccccccccCCCCCCc
Q 006517 202 LLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINER---GPIF----KVLLVAAVSLLTSCCS-YGLPWLSHCIPCPSYLE 273 (642)
Q Consensus 202 l~~~i~lgi~~gl~g~~f~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~ 273 (642)
|...+++|++.|+++.+|....++..+++..+... .++. .++.+++.+++.+.+. ++.|..
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a----------- 70 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQA----------- 70 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----------
Confidence 34567899999999999999998888776543221 1111 1233444444444443 344543
Q ss_pred CCCCCCCCCCCCcccccCCCCcchhhhhhhccCchHHHHhhhccC-CCcchhHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006517 274 ADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSG-TSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLF 352 (642)
Q Consensus 274 ~~~~~~~g~~g~~~~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f 352 (642)
.++|. .+ ++...++. .+...++.. +..|++.+.+++|+|.|-|..
T Consensus 71 -------~GsGI-----------p~------------v~~~l~g~~~~~~l~~r~----~~~k~i~~~l~i~sG~svGrE 116 (426)
T cd03683 71 -------VGSGI-----------PE------------MKTILRGVVLPEYLTFKT----LVAKVIGLTCALGSGLPLGKE 116 (426)
T ss_pred -------CCCCH-----------HH------------HHHHHcCCCccccccHHH----HHHHHHHHHHHHhcCCCCCCC
Confidence 11111 11 12222211 111222333 357999999999999999999
Q ss_pred hhHHHHHHHHhhHHHHhhhcc-----cCCChhHHHHHHhhhhhcccccchhhHhhHHHhhc-CCcc--cHHHHHHHHHHH
Q 006517 353 IPVILAGASYGRLVGNLLGAL-----SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELT-NNLL--MLPLVMLVLLIS 424 (642)
Q Consensus 353 ~P~l~iGA~~G~~~g~~~~~~-----~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~Elt-g~~~--~l~p~~~~~~~a 424 (642)
.|+..+||++|..+++..+.. ...+...+..+|+||.++++.++|++++++.+|.. .+++ .+.|.+++++++
T Consensus 117 GP~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a 196 (426)
T cd03683 117 GPFVHISSIVAALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCG 196 (426)
T ss_pred CchHHHHHHHHHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHH
Confidence 999999999999999987521 11223368999999999999999999999999965 4443 577888888888
Q ss_pred HHHHhh
Q 006517 425 KTVADS 430 (642)
Q Consensus 425 ~~~~~~ 430 (642)
..+++.
T Consensus 197 ~~v~~~ 202 (426)
T cd03683 197 AFTFRL 202 (426)
T ss_pred HHHHHH
Confidence 887654
No 120
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=98.99 E-value=4.9e-09 Score=114.16 Aligned_cols=176 Identities=14% Similarity=0.112 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHhhhhh-ccccccccccCCCCCCcCCCCCCCCCCCCcc
Q 006517 209 GVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSLLTSCCS-YGLPWLSHCIPCPSYLEADRCPTVGRSGNYK 287 (642)
Q Consensus 209 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~ 287 (642)
|++.|+++..+.....++..++..... ....++.+++.+++.+.+. ++.|.. .| +|.
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~~~~p~a-----------------~G-sGI-- 58 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYCN--YIIYVLLALLFAFIAVLLVKVVAPYA-----------------AG-SGI-- 58 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHhcCccc-----------------cC-CCH--
Confidence 678899999999888888776654321 1112334445555554443 444443 11 111
Q ss_pred cccCCCCcchhhhhhhccCchHHHHhhhccC-CCcchhHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHH
Q 006517 288 NFQCPAGHYNDLASLFLNTNDDAIRNLFSSG-TSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLV 366 (642)
Q Consensus 288 ~~~~~~~~y~~~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~ll~~~~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~ 366 (642)
..++..+++. .++..++.. ++.|++.+.+++++|.|.|...|+..+||++|..+
T Consensus 59 ---------------------p~v~~~l~g~~~~~~~~~~~----~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l 113 (445)
T cd03684 59 ---------------------PEIKTILSGFIIRGFLGKWT----LLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNII 113 (445)
T ss_pred ---------------------HHHHHHHcCccccccccHHH----HHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHH
Confidence 1122222221 112233333 34799999999999999999999999999999999
Q ss_pred HHhhhc--ccCCChhHHHHHHhhhhhcccccchhhHhhHHHhhc-CCcc--cHHHHHHHHHHHHHHHhhc
Q 006517 367 GNLLGA--LSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELT-NNLL--MLPLVMLVLLISKTVADSF 431 (642)
Q Consensus 367 g~~~~~--~~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~Elt-g~~~--~l~p~~~~~~~a~~~~~~~ 431 (642)
+++++. ....+...+..+|+||.++++.++|++++++.+|.. .+++ .+.|.++++++|..+.+.+
T Consensus 114 ~~~~~~~~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~ 183 (445)
T cd03684 114 SRLFPKYRRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSL 183 (445)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHh
Confidence 998853 123455678999999999999999999999999954 5543 5888999999999888754
No 121
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=98.97 E-value=1.8e-08 Score=109.47 Aligned_cols=98 Identities=23% Similarity=0.291 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhcccCCChhHHHHHHhhhhhcccccchhhHhhHHHhhc-CC-
Q 006517 333 VAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELT-NN- 410 (642)
Q Consensus 333 ~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~pls~~vi~~Elt-g~- 410 (642)
.+|.+.+.+++++|.+.|...|+..+|+.+|..++++++.. ..+......+|+||.+|++.++|++++++.+|+- +.
T Consensus 114 ~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~~-~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~ 192 (443)
T COG0038 114 PVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKLS-REDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRF 192 (443)
T ss_pred HHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhc
Confidence 35999999999999999999999999999999999999632 2356779999999999999999999999999965 33
Q ss_pred cc--cHHHHHHHHHHHHHHHhhc
Q 006517 411 LL--MLPLVMLVLLISKTVADSF 431 (642)
Q Consensus 411 ~~--~l~p~~~~~~~a~~~~~~~ 431 (642)
++ .+.|.++++++|+.+.+.+
T Consensus 193 ~~~~~l~p~~vaa~va~~v~~~~ 215 (443)
T COG0038 193 LEYRALVPVLVAAVVALLVAGLF 215 (443)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHc
Confidence 43 5999999999999999877
No 122
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.82 E-value=6.1e-09 Score=79.15 Aligned_cols=55 Identities=29% Similarity=0.417 Sum_probs=51.1
Q ss_pred ccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHh
Q 006517 573 HPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 630 (642)
Q Consensus 573 ~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~ 630 (642)
+++|++++.++++++++.++.+.|++++.+++||+|+ +++++|+||++|+++...
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE---DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST---TSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CCEEEEEEEHHHHHhhhh
Confidence 4688899999999999999999999999999999998 899999999999997653
No 123
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.81 E-value=9.6e-09 Score=78.07 Aligned_cols=56 Identities=30% Similarity=0.479 Sum_probs=52.8
Q ss_pred ccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHh
Q 006517 461 ASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLK 521 (642)
Q Consensus 461 V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~ 521 (642)
|+|+|++++.++++++++.++.+.|.+++++.+||+|++ ++++|+++++||++.+.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED-----GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----SBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----CEEEEEEEHHHHHhhhh
Confidence 578999999999999999999999999999999999987 99999999999998764
No 124
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.77 E-value=1.7e-08 Score=102.54 Aligned_cols=119 Identities=21% Similarity=0.344 Sum_probs=100.5
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++++++++.++.++++....++++.+||.++. .-..+|+|+||.+|+... ++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g--~~~~KLvG~vtsrdi~f~-~~------------------------- 168 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDG--KRGSKLVGIITSRDIQFL-ED------------------------- 168 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCC--cccceeEEEEehhhhhhh-hc-------------------------
Confidence 57788999999999999999999999999753 234799999999998653 11
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
+...++++|.+++++.+.+.+++++-+++++.+-..+||||+ +|+++-+|+|.||.+
T Consensus 169 --------------------~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~---~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 169 --------------------NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD---KGELVAMLSRTDLMK 225 (503)
T ss_pred --------------------ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc---CCceeeeeehhhhhh
Confidence 123457788888899999999999999999999999999998 899999999999998
Q ss_pred hHhhccCcccccc
Q 006517 628 EHVLGLYPHIVNR 640 (642)
Q Consensus 628 ~~~~~~~~~~~~~ 640 (642)
++.||...|+
T Consensus 226 ---~~~yPlask~ 235 (503)
T KOG2550|consen 226 ---NRDYPLASKD 235 (503)
T ss_pred ---hcCCCccccC
Confidence 6777766553
No 125
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.73 E-value=2.2e-08 Score=94.66 Aligned_cols=129 Identities=19% Similarity=0.308 Sum_probs=105.7
Q ss_pred cccccccccccC--CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCC
Q 006517 456 MKNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 533 (642)
Q Consensus 456 l~~~~V~diM~~--~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~ 533 (642)
..+++|+|+|.+ +.++++.+.++.+....+.++.|+.|||+.++ .+.+.|++..+||++.+....
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed----kD~v~GIL~AKDLL~~~~~~~--------- 130 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----KDHVEGILLAKDLLPFMRSDA--------- 130 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC----chhhhhhhhHHHHHHHhcCCc---------
Confidence 457899999998 68999999999999999999999999999764 388999999999998765421
Q ss_pred cccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCC
Q 006517 534 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 613 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~ 613 (642)
.. .+++++. ++.+.|++.-.+...++-|+..+.+-..|+|+ -
T Consensus 131 ----~~------------------------------F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDE---f 172 (293)
T COG4535 131 ----EP------------------------------FDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE---F 172 (293)
T ss_pred ----cc------------------------------ccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEec---c
Confidence 00 1222332 45567889999999999999999999999998 8
Q ss_pred CCeEEEEehhhcchhHhhccCc
Q 006517 614 PPIVGILTRHDFMPEHVLGLYP 635 (642)
Q Consensus 614 g~lvGIITr~Dll~~~~~~~~~ 635 (642)
|-+-|+||.+|++....-+...
T Consensus 173 GgVsGLVTIEDiLEqIVGdIED 194 (293)
T COG4535 173 GGVSGLVTIEDILEQIVGDIED 194 (293)
T ss_pred CCeeeeEEHHHHHHHHhccccc
Confidence 8899999999999876654433
No 126
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.60 E-value=2.5e-07 Score=97.96 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=98.0
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
++..+.+++++.++++.|.+.+.+.+||||++ ++.+|.+++.|+.....+..+..... ...+..
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-----g~~v~~~s~~Dv~~l~~~~~~~~~~~---------~~l~~~-- 301 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDEN-----GKKVGNYSRFDVIHLAREGTYNNLDL---------SCLSEA-- 301 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-----CceecceehhhhhhhhhcCccCccch---------hHHHHH--
Confidence 68899999999999999999999999999987 77799999999988766543322110 000000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
.+.+..-....+++.+++++.++++.+...+.+++.|||+ +|+++|+||..|++.
T Consensus 302 ----------------------~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~---~~~l~GvvSLsDil~ 356 (381)
T KOG1764|consen 302 ----------------------LSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE---DGVLVGVISLSDILS 356 (381)
T ss_pred ----------------------hhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcC---CCcEEEEeeHHHHHH
Confidence 0011111223589999999999999999999999999998 899999999999998
Q ss_pred hHhhccC
Q 006517 628 EHVLGLY 634 (642)
Q Consensus 628 ~~~~~~~ 634 (642)
+...+..
T Consensus 357 ~l~~~p~ 363 (381)
T KOG1764|consen 357 YLVLTPS 363 (381)
T ss_pred HHHhCcc
Confidence 8776543
No 127
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=98.57 E-value=5.3e-07 Score=95.73 Aligned_cols=144 Identities=22% Similarity=0.318 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--ccCCCHHHHHHHHhCCCCCCCCccc----hHHHHHHHHHHHHhhCCcCCCchhHHHH
Q 006517 7 TSINLGLAILAAILCAYIAPA--AAGSGIPEVKAYLNGIDAHSILAPS----TLFVKIFGSIFGVAAGFVVGKEGPMVHT 80 (642)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~p~--a~GsGip~v~~~l~g~~~~~~~~~~----~~~~k~~~~~~~i~~G~s~G~EGP~v~i 80 (642)
.+.+++.+++.+.+. ++.|+ ..|.|-.+++..+++.. ...++. ..+.|++.+.+++++|.+.|.-.|+.-+
T Consensus 203 ~l~~~i~gl~~g~l~-~~~p~~~~~g~G~~~i~~ll~~~~--~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~i 279 (355)
T PF00654_consen 203 ILRPVIGGLVIGLLA-FFFPEGSVLGSGYELIQSLLSGSP--PWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFI 279 (355)
T ss_dssp HHHHHHHHHHHHHHH-HSSGG-SGSSSSTTHHHHHCTT------S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHhhhcccCCcHHHHHHHHcCCc--chhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHH
Confidence 346666777766665 46788 99999999988887621 123343 3789999999999999999999999999
Q ss_pred HHHHHHHhhccCccccchhhhhhhccCC--hhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhhhhhhhhHHHHHHHH
Q 006517 81 GACIANLLGQGGSKKYHLTWRWLRYFKN--DRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTT 158 (642)
Q Consensus 81 ga~ig~~~~~~~~~~~~l~~~~~~~~~~--~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~ 158 (642)
|+.+|..++. .+.. .+.+ ..+...+..+|++|.++++.|+|+..+++.+|.+.. ...+.+.++++
T Consensus 280 Ga~~G~~~~~----~~~~------~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~---~~~~~p~lia~ 346 (355)
T PF00654_consen 280 GAALGRLFGA----LLGS------FFPGISSVDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGD---FQLLLPLLIAV 346 (355)
T ss_dssp HHHHHHHHHH----HHHH------H-GGG-T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH-----GGGHHHHHHHH
T ss_pred HHHHHHHHHH----HHHh------hCCCcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence 9999999987 2221 1111 114678999999999999999999999999999983 23345566666
Q ss_pred HHHHHHHH
Q 006517 159 AVVAVVLR 166 (642)
Q Consensus 159 ~va~~v~~ 166 (642)
.+|..+.+
T Consensus 347 ~~a~~v~~ 354 (355)
T PF00654_consen 347 AVAYLVAR 354 (355)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 66655543
No 128
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.53 E-value=6.8e-07 Score=94.46 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=91.3
Q ss_pred ccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhh
Q 006517 465 VSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHD 544 (642)
Q Consensus 465 M~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 544 (642)
|........++.+..++.+.+.+.+.+...|+|++ +++.|.++.+++.......
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~--------------------- 301 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQ-----NKLVGVVDVESIKQARKKA--------------------- 301 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeHHHHHHHhhcC---------------------
Confidence 33334455667788999999998888899999987 8999999999987544321
Q ss_pred hcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhh
Q 006517 545 FAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHD 624 (642)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~D 624 (642)
..+.+.+.+...++++++++.+++..|.+.+.. +||+|+ +|+++|+||+.+
T Consensus 302 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~~~~g~i~~~~ 352 (363)
T TIGR01186 302 -------------------------QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE---DQRLVGIVTRGS 352 (363)
T ss_pred -------------------------CchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC---CCcEEEEEEHHH
Confidence 112334555667899999999999999999998 999998 899999999999
Q ss_pred cchhHhhcc
Q 006517 625 FMPEHVLGL 633 (642)
Q Consensus 625 ll~~~~~~~ 633 (642)
+++......
T Consensus 353 ~~~~~~~~~ 361 (363)
T TIGR01186 353 LVDALYDSR 361 (363)
T ss_pred HHHHHHhhc
Confidence 998776543
No 129
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=9.8e-07 Score=94.40 Aligned_cols=119 Identities=17% Similarity=0.103 Sum_probs=93.8
Q ss_pred ccccccccCCe---EEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcc
Q 006517 459 LVASDVVSGPL---ITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSD 535 (642)
Q Consensus 459 ~~V~diM~~~~---~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~ 535 (642)
+++.++|.+.. +...++.+..++++.|.+.+.+...|+|++ ++++|+++.+++.+.....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~------------ 336 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-----NKFVGAVSIDSLKTALTQQ------------ 336 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-----CcEEEEEeHHHHHhhhhcC------------
Confidence 46677775532 223466788999999999999999999987 9999999999997543211
Q ss_pred cccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCC
Q 006517 536 IMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPP 615 (642)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~ 615 (642)
.++.+.+.+...++++++++.+++..+.+.... +||+|+ +|+
T Consensus 337 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~~ 378 (400)
T PRK10070 337 ----------------------------------QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE---DQQ 378 (400)
T ss_pred ----------------------------------CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---CCc
Confidence 112334455667899999999999999997776 999998 899
Q ss_pred eEEEEehhhcchhHhhc
Q 006517 616 IVGILTRHDFMPEHVLG 632 (642)
Q Consensus 616 lvGIITr~Dll~~~~~~ 632 (642)
++|+||+.++++....+
T Consensus 379 ~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 379 YVGIISKGMLLRALDRE 395 (400)
T ss_pred EEEEEEHHHHHHHHHhc
Confidence 99999999999877654
No 130
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.25 E-value=3.7e-07 Score=89.20 Aligned_cols=148 Identities=20% Similarity=0.189 Sum_probs=97.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCchHHHHHHHhcCCCccccccccccccccccccccCCeEEecCcccHHHHHHHHhhCCCCc
Q 006517 413 MLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNG 492 (642)
Q Consensus 413 ~l~p~~~~~~~a~~~~~~~~~~iy~~~l~~~g~~~~~~~~~~~l~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~ 492 (642)
.+.|+...+++=..++ -.|+. +.++.+|........... --..++...+-.-+-+|+-+.+++.+-
T Consensus 152 ~l~Pval~SliLv~~a-----~lynn-l~~r~YPh~~~~p~an~H------gT~Dppp~~rvgfs~~Dld~aL~~~~E-- 217 (382)
T COG3448 152 VLWPVALNSLILVGLA-----LLYNN-LTRRTYPHHWLSPPANLH------GTADPPPSQRVGFSSEDLDAALQRLGE-- 217 (382)
T ss_pred eehhhhhhhHHHHHHH-----HHHHH-HhcCCCCCccCCCccccc------CCCCCCchhccCCCHHHHHHHHHhcCc--
Confidence 4777777766655554 45555 555666652221111111 111233344445566677777666442
Q ss_pred eeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcccCCCCCccccccccchhhhhccccc
Q 006517 493 FPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDL 572 (642)
Q Consensus 493 ~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 572 (642)
.+| |+++||.+++++.+... +. ......+.
T Consensus 218 --~lD-------------IdrddLe~llr~~elqa-----------------~~------------------R~~~~Ltc 247 (382)
T COG3448 218 --TLD-------------IDRDDLERLLRETELQA-----------------LR------------------RRMGELTC 247 (382)
T ss_pred --eec-------------CCHHHHHHHHHHHHHHH-----------------HH------------------HHhccccH
Confidence 232 36788888776522110 00 01113556
Q ss_pred ccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 573 HPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 573 ~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
.++|.++++++++|++++++.+++.+++++.+||+|| +.|++||||++|+.+
T Consensus 248 adIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~---~~rl~GiVt~~dl~~ 299 (382)
T COG3448 248 ADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE---HRRLVGIVTQRDLLK 299 (382)
T ss_pred HHhcCccceecCCcCChHHHHHHHHHcCccccccccc---ccceeeeeeHHHHhh
Confidence 8899999999999999999999999999999999998 889999999999998
No 131
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.21 E-value=4.3e-07 Score=99.28 Aligned_cols=112 Identities=11% Similarity=0.221 Sum_probs=90.2
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCccccc
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMR 538 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~ 538 (642)
.+++++|++++.++++++++.++.+.|+++++..+||||++ ++++|+||.+|+.+.+.+..
T Consensus 195 ~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-----g~lvGiIt~~Dil~~l~~~~-------------- 255 (449)
T TIGR00400 195 EILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-----GRLVGIVTVDDIIDVIQSEA-------------- 255 (449)
T ss_pred CcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-----CeEEEEEEHHHHHHHHHhhh--------------
Confidence 46899999999999999999999999999999999999987 89999999999998776421
Q ss_pred ccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEE
Q 006517 539 RFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVG 618 (642)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvG 618 (642)
-+++|+...++..+++.+.++...+.+++...++|.- +.|
T Consensus 256 ---------------------------------~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~-------~~~ 295 (449)
T TIGR00400 256 ---------------------------------TEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVLL-------VSS 295 (449)
T ss_pred ---------------------------------HHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHHH-------HHH
Confidence 0234444444444577889999999999998888864 778
Q ss_pred EEehhhcchhHh
Q 006517 619 ILTRHDFMPEHV 630 (642)
Q Consensus 619 IITr~Dll~~~~ 630 (642)
++| ..+++.+.
T Consensus 296 ~~t-~~ii~~f~ 306 (449)
T TIGR00400 296 TFT-ATIISNYE 306 (449)
T ss_pred HHH-HHHHHHHH
Confidence 888 66666543
No 132
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.19 E-value=2.5e-06 Score=74.76 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=51.0
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
.+++|+|.+++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-----~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD-----GTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-----CeEEEEEEHHHhh
Confidence 78999999999999999999999999999999999999987 8999999999986
No 133
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.18 E-value=8.4e-07 Score=99.91 Aligned_cols=161 Identities=18% Similarity=0.274 Sum_probs=106.1
Q ss_pred HHhcCCCccccccc------ccccccccccccc-CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEe
Q 006517 440 VKLKGLPYLEAHAE------PYMKNLVASDVVS-GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVL 512 (642)
Q Consensus 440 l~~~g~~~~~~~~~------~~l~~~~V~diM~-~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt 512 (642)
.+.+++|.+..+.. ..-...+|+++|+ +++.++++++++.++.+.|.+++++.+||+|++ ++++|+++
T Consensus 221 a~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-----g~lvGiit 295 (546)
T PRK14869 221 AKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-----GKVVGVIS 295 (546)
T ss_pred HHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-----CCEEEEEE
Confidence 34566666544321 1234678999999 899999999999999999999999999999987 99999999
Q ss_pred HHHHHHHHhccccccccccCCcccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCcee---cCCCCH
Q 006517 513 RSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTV---VETMSL 589 (642)
Q Consensus 513 ~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v---~~~~~l 589 (642)
++|+.+...++...-. . .+..+... ..++.+. ....| +..+.++++..|+.+ +...+.
T Consensus 296 ~~dl~~~~~~~~iLVD-----~--------~e~~q~~~----~~~~~~i-~~iiD-HH~~~~~~~~~pi~~~~~~~gst~ 356 (546)
T PRK14869 296 RYHLLSPVRKKVILVD-----H--------NEKSQAVE----GIEEAEI-LEIID-HHRLGDIQTSNPIFFRNEPVGSTS 356 (546)
T ss_pred HHHhhccccCceEEEc-----C--------cccccccc----chhhceE-EEEec-CCccCCCCCCCCcEEEeeeeeeHH
Confidence 9999874432111000 0 00000000 0000000 00011 123455666666655 336677
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchh
Q 006517 590 AKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 628 (642)
Q Consensus 590 ~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~ 628 (642)
..+.++|++.+....|++. ...+.||+|-.+.+++
T Consensus 357 tiv~~~~~~~~i~~~~~ia----~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 357 TIVARMYRENGIEPSPEIA----GLLLAAILSDTLLFKS 391 (546)
T ss_pred HHHHHHHHHcCCCCCHHHH----HHHHHHHHHHhcCccC
Confidence 8899999999999888887 4569999999988864
No 134
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.99 E-value=9.2e-06 Score=78.35 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=56.1
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHh
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLK 521 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~ 521 (642)
.+.+|+|+|+++++++++++.+.|++++|.+++...+.|+|++ ++.+|+||+.|+++.+.
T Consensus 232 ~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~-----gkpvGiITrTDIL~~ia 291 (294)
T COG2524 232 LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSN-----GKPVGIITRTDILTRIA 291 (294)
T ss_pred ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccC-----CcEEEEEehHHHHHHhh
Confidence 3679999999999999999999999999999999999999987 99999999999997654
No 135
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.94 E-value=1.4e-05 Score=69.56 Aligned_cols=55 Identities=24% Similarity=0.290 Sum_probs=51.0
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+.+
T Consensus 56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-----~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-----GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----CeEEEEEEhHHhhc
Confidence 46889999899999999999999999999999999999987 89999999999864
No 136
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.91 E-value=1.4e-05 Score=69.94 Aligned_cols=55 Identities=25% Similarity=0.288 Sum_probs=50.3
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 570 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 570 ~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
..++++|.+++.++++++++.++++.|.+.+.+.+||+|+ +++++|+||.+|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD---DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC---CCeEEEEEEHHHhhc
Confidence 4577888888999999999999999999999999999997 789999999999874
No 137
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.89 E-value=1e-05 Score=72.27 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=55.7
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhhcc
Q 006517 569 FVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGL 633 (642)
Q Consensus 569 ~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~~~ 633 (642)
.+..+.+|+.+.+.+++|++++++.++|++.++.++||++ +++++|-||.+|+.+..++..
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~----~~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE----EDKVVGSITENDIVRALLEGM 124 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee----CCeeeeeecHHHHHHHHhccc
Confidence 4567889999999999999999999999999999999999 589999999999998877654
No 138
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.82 E-value=2.9e-05 Score=67.81 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=51.5
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
+.+++++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+.+
T Consensus 58 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-----ARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-----CcEEEEEEhHhhcc
Confidence 457889999999999999999999999999999999999986 89999999999863
No 139
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.62 E-value=7.7e-05 Score=65.93 Aligned_cols=57 Identities=26% Similarity=0.448 Sum_probs=51.9
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
...+++++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+++++|+.+
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDED-----RRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-----CCEEEEEEhHHhhc
Confidence 3557899999999999999999999999999999999999976 89999999999864
No 140
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.58 E-value=0.00017 Score=79.65 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=52.5
Q ss_pred cccccccc-CCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHH
Q 006517 459 LVASDVVS-GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 520 (642)
Q Consensus 459 ~~V~diM~-~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l 520 (642)
.+++|+|+ ++++++++++++.++.+.|.+++.+.+||+|++ ++++|+||++|+.+.+
T Consensus 147 ~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-----g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 147 QPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-----GRLKGLITVKDIEKAE 204 (486)
T ss_pred CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEEhHHhhhhh
Confidence 46889998 689999999999999999999999999999987 8999999999998754
No 141
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.57 E-value=0.00012 Score=63.64 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=49.9
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+.
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEE-----GRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-----CCEEEEEEhHHhc
Confidence 46889999889999999999999999999999999999976 8999999999985
No 142
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.56 E-value=0.00012 Score=63.77 Aligned_cols=56 Identities=21% Similarity=0.412 Sum_probs=50.0
Q ss_pred cccccccccCCeEEecCc--ccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGV--EKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~--~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
+.++.++|.+++.+++++ +++.++++.|.+++.+.+||+|++ ++++|+++++|+.+
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-----~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-----GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-----CCEEEEEEhHHhhc
Confidence 357889999888889887 689999999999999999999987 89999999999864
No 143
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.55 E-value=0.00014 Score=62.96 Aligned_cols=55 Identities=13% Similarity=0.168 Sum_probs=50.0
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
..+++++|.+++.++++++++.++++.|.+++...+||+|+ ++++|++|++|+.+
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG------GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------CEEEEEEEHHHhhc
Confidence 35788999988999999999999999999999999999985 79999999999864
No 144
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.55 E-value=0.00015 Score=64.20 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=47.6
Q ss_pred ccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 461 ASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 461 V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
+.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+||.+|+.
T Consensus 70 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQ-----GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCC-----CcEEEEEeHHHhh
Confidence 345788889999999999999999999999999999987 8999999999985
No 145
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.53 E-value=0.00014 Score=62.76 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=51.4
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVL 519 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~ 519 (642)
+.+++++|.+++.++++++++.++.+.|.+++...+||+|++ ++++|+|+++|+.+.
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEE-----GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-----CcEEEEEEhHHhhhh
Confidence 356889998899999999999999999999998899999976 899999999999753
No 146
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.53 E-value=0.00016 Score=63.50 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=52.1
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.+.++.++|.+++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+++|+++
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQ-----GRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-----CcEEEEEEHHHhhh
Confidence 3567889999999999999999999999999999999999986 89999999999864
No 147
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.52 E-value=0.00015 Score=62.43 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=51.0
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
+.+++++|.+++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|+.+
T Consensus 52 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-----KKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-----CCEEEEEEHHHhhc
Confidence 456889999899999999999999999999999999999976 89999999999863
No 148
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.51 E-value=0.00014 Score=63.90 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=50.6
Q ss_pred ccccccccccC--CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 457 KNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 457 ~~~~V~diM~~--~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
...+++++|.+ ++.++++++++.++++.|.+++++.+||+|++. ++++++|+||++|+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~--~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVD--EGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCC--ccceEEEEEEhhheec
Confidence 35678889985 788999999999999999999999999999740 1258999999999853
No 149
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.51 E-value=0.00017 Score=62.47 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=50.8
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
.+.++.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|++++.|+.
T Consensus 56 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----g~~~Gvvt~~dl~ 111 (113)
T cd04615 56 KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDK-----GKVGGIVTEDDIL 111 (113)
T ss_pred cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCC-----CeEEEEEEHHHhh
Confidence 3457889999899999999999999999999998899999986 8999999999985
No 150
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.50 E-value=0.00015 Score=63.10 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=50.2
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
..+++++|.+++.++++++++.++++.|.+++...+||+|+ ++++|+|+++|+.+
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN------NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------CEEEEEEEHHHhhc
Confidence 45788999989999999999999999999999999999986 79999999999864
No 151
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.48 E-value=0.00017 Score=61.26 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=41.7
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCC-CCeEEEEehhhcchh
Q 006517 580 PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGILTRHDFMPE 628 (642)
Q Consensus 580 ~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~-g~lvGIITr~Dll~~ 628 (642)
+.++++++++.++.++|.+.+.+.+||+|+ + ++++|+||++|+.+.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~~~~~~Givt~~Dl~~~ 49 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDS---RKQQFVGMLTITDFILI 49 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeC---CCCEEEEEEEHHHHhhh
Confidence 468899999999999999999999999996 4 789999999999864
No 152
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.47 E-value=0.00021 Score=62.85 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=44.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHh
Q 006517 579 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 630 (642)
Q Consensus 579 ~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~ 630 (642)
+..++++++++.++.+.|.+.+.+.+||+|+ +|+++|++|++|+++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CCeEEEEEeHHHHHHHHh
Confidence 4568899999999999999999999999997 789999999999997543
No 153
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.45 E-value=0.00023 Score=61.01 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=50.2
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+.+
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-----NNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-----CeEEEEEEHHHhhc
Confidence 46889999889999999999999999999998999999987 89999999999863
No 154
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.44 E-value=0.00018 Score=63.37 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=51.7
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
...++.++|.+++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|+.+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-----DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-----CcEEEEEEhHHhhc
Confidence 4567889999999999999999999999999999999999986 89999999999864
No 155
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.44 E-value=0.00026 Score=64.00 Aligned_cols=56 Identities=23% Similarity=0.424 Sum_probs=51.0
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.+.+++++|.+++..+++++++.++.+.|.+++++.+||+|+ ++++|+|+++|+.+
T Consensus 79 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN------DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------CEEEEEEEHHHHhh
Confidence 456899999999999999999999999999999999999987 79999999999864
No 156
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.44 E-value=0.00023 Score=61.67 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=50.4
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.++.++|.+++.++++++++.++++.|.+++...+||+|++ ++++|+++..||.+
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDN-----GRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----CCEEEEEEHHHhhc
Confidence 46899999999999999999999999999998999999976 89999999999863
No 157
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.43 E-value=0.00017 Score=62.45 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=50.0
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|++
T Consensus 58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-----~~~~Gvvs~~dl~ 111 (113)
T cd04587 58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-----GQVVGLLDVTKLT 111 (113)
T ss_pred CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-----CCEEEEEEHHHhc
Confidence 57889999899999999999999999999999999999986 8999999999986
No 158
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.00021 Score=61.74 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=50.1
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.++.++|.+++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|+.+
T Consensus 56 ~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-----GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-----CCEEEEEEHHHhhc
Confidence 36889998899999999999999999999999999999986 89999999999863
No 159
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.00026 Score=62.31 Aligned_cols=57 Identities=18% Similarity=0.355 Sum_probs=51.9
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|++ ++++|++++.|+.+
T Consensus 65 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-----GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-----CCEEEEEEHHHhhc
Confidence 4567899999999999999999999999999999999999986 89999999999863
No 160
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.42 E-value=0.00026 Score=71.49 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=57.9
Q ss_pred cccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhc
Q 006517 456 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 522 (642)
Q Consensus 456 l~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~ 522 (642)
.++.++..+|++++.++.+.+++..+.+.|--.+++-+||+|++ .+++|+|||+|+++.++.
T Consensus 246 ~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-----~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 246 KPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSN-----NTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCC-----ceEEEEEEHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999998 999999999999998875
No 161
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.41 E-value=0.00027 Score=61.54 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=48.8
Q ss_pred ccccccccCCeEEecC--cccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 459 LVASDVVSGPLITFSG--VEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~--~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.+++++|.++..++.. ++++.++++.|.+++...+||+|++ ++++|+|+++|+.+
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-----~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDD-----GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-----CeEEEEEEHHHhhc
Confidence 4578999887777766 9999999999999999999999986 89999999999863
No 162
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.41 E-value=0.00027 Score=50.37 Aligned_cols=46 Identities=35% Similarity=0.480 Sum_probs=41.1
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchh
Q 006517 580 PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 628 (642)
Q Consensus 580 ~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~ 628 (642)
+.++++++++.++.+.|.+.+.+.+||+++ +++++|+++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE---EGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC---CCeEEEEEEHHHHHHh
Confidence 356789999999999999999999999997 6889999999998753
No 163
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.41 E-value=0.00027 Score=60.96 Aligned_cols=57 Identities=25% Similarity=0.335 Sum_probs=51.2
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
...+++++|.+++.++++++++.++++.|.+.+...+||+|++ ++++|+++.+|+.+
T Consensus 54 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-----~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDD-----GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCC-----CcEEEEEEhHHhhc
Confidence 3467889999999999999999999999999888889999987 89999999999863
No 164
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.40 E-value=0.00023 Score=74.76 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=51.7
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.+.+|+|+|++++.++++++++.++.+.|.+++.+.+||+|+ ++++|+|+++|+.+
T Consensus 267 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~------~~lvGiit~~dil~ 322 (326)
T PRK10892 267 RQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG------DHLLGVLHMHDLLR 322 (326)
T ss_pred ccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC------CEEEEEEEhHHhHh
Confidence 346799999999999999999999999999999999999986 79999999999975
No 165
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.40 E-value=0.00031 Score=59.31 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=42.4
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 579 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 579 ~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
++.++.+++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~ 47 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DGKLSGIITERDLIA 47 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CCCEEEEEEHHHHhc
Confidence 5678899999999999999999999999997 789999999999886
No 166
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.39 E-value=0.00033 Score=63.28 Aligned_cols=50 Identities=24% Similarity=0.111 Sum_probs=45.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhh
Q 006517 579 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 631 (642)
Q Consensus 579 ~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~ 631 (642)
++.++++++++.++++.|.+.+...+||+|+ +|+++|+||.+|+++....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CCeEEEEEEHHHHHHHHhh
Confidence 4578999999999999999999999999997 7899999999999986654
No 167
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.39 E-value=0.0003 Score=60.36 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=49.7
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
.+++++|.+++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++++|+.
T Consensus 54 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-----g~~~Gvit~~~l~ 107 (109)
T cd04583 54 KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-----GKLVGLITRSSLV 107 (109)
T ss_pred CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCC-----CeEEEEEehHHhh
Confidence 46788999999999999999999999999899999999987 8999999999986
No 168
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.38 E-value=0.0008 Score=73.57 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=54.3
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhc
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 522 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~ 522 (642)
.+++++|+++++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++||.+....
T Consensus 146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-----g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-----GTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEHHHHHHHHhC
Confidence 46899999999999999999999999999999999999987 899999999999876543
No 169
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.38 E-value=0.00031 Score=60.73 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=49.7
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
.+.++.++|.+++..+++++++.++.+.|.+++.+.+||+|+ ++++|+|+++|+.
T Consensus 56 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~~di~ 110 (112)
T cd04802 56 REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD------DELVGIVTTTDIV 110 (112)
T ss_pred ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC------CEEEEEEEhhhhh
Confidence 345788999989999999999999999999999999999986 5899999999986
No 170
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.38 E-value=0.00052 Score=48.82 Aligned_cols=47 Identities=28% Similarity=0.425 Sum_probs=42.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHH
Q 006517 469 LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 520 (642)
Q Consensus 469 ~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l 520 (642)
+.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-----GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-----CeEEEEEEHHHHHHhh
Confidence 5678899999999999999999999999986 8999999999997643
No 171
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.37 E-value=0.0003 Score=60.91 Aligned_cols=56 Identities=27% Similarity=0.488 Sum_probs=51.3
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeC-CCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDE-PPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~-~~~~~~~~lvGiIt~~dL~~ 518 (642)
..++.++|.+++.++++++++.++.+.|.+.+.+.+||+|+ + ++++|+++.+|+..
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-----~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDP-----GKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCC-----CEEEEEEEhHHhhc
Confidence 36789999999999999999999999999999999999987 6 89999999999863
No 172
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.36 E-value=0.00036 Score=59.67 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=49.1
Q ss_pred cccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 460 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 460 ~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
+++++|.+++..+++++++.++++.|.+++...+||+|++ ++++|+++++|+.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED-----GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCC-----CcEEEEEEHHHhhc
Confidence 5788898888889999999999999999999999999986 89999999999863
No 173
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.36 E-value=0.00036 Score=60.21 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=50.1
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
...++.++|.+++.++++++++.++.+.|.+++.+.+||+| + ++++|+++++|+.
T Consensus 54 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-----~~~~Gvvt~~di~ 108 (110)
T cd04595 54 GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-D-----GRLVGIVTRTDLL 108 (110)
T ss_pred ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-C-----CEEEEEEEhHHhh
Confidence 34678899999999999999999999999999999999999 4 8999999999986
No 174
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.35 E-value=0.00025 Score=63.93 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=50.5
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
..+++++|.+++.++++++++.++.+.|.+.+.+.+||+| + ++++|+++++|+.+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-----g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-----GRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-C-----CEEEEEEEhHhhhc
Confidence 4578999999999999999999999999999999999999 5 89999999999864
No 175
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.35 E-value=0.00027 Score=61.23 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=50.2
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.++.++|.+++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|+.+
T Consensus 58 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-----GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCC-----CcEEEEEEHHHhhc
Confidence 35889999999999999999999999999999999999886 89999999999864
No 176
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.35 E-value=0.00031 Score=77.36 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=53.6
Q ss_pred ccccccccccC--CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHH
Q 006517 457 KNLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 520 (642)
Q Consensus 457 ~~~~V~diM~~--~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l 520 (642)
.+.+|+|+|++ +++++++++++.++.+.|.+++.+.+||+|++ ++++|+||++|+.+..
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-----g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-----GNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEhHHHHhcc
Confidence 35679999997 78999999999999999999999999999987 8999999999998743
No 177
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.34 E-value=0.00098 Score=70.87 Aligned_cols=131 Identities=20% Similarity=0.213 Sum_probs=95.8
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCCcccccccchhhhcc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAK 547 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (642)
+...+.+..++-++...+.+++++.+||.|.+ .+.+..++|.+-+++.+...... +....++.
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~----~~~v~~ilt~~rIl~~l~~~~~~-------------~~~~~~l~ 225 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPE----TGEVLYILTQRRILKFLWLNGRL-------------LPLPSLLS 225 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeeccc----ccceeeehhHHHHHHHHHHhhcc-------------cccHHHhh
Confidence 44888999999999999999999999999953 37999999999998877642100 00000000
Q ss_pred cCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 548 AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
.++.|+. --...+...+..++++.+|+++|.+.++..+||||+ +|+.+|.+++.|+..
T Consensus 226 ------~s~~dl~-------------ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g~~v~~~s~~Dv~~ 283 (381)
T KOG1764|consen 226 ------KSLSDLG-------------IGTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NGKKVGNYSRFDVIH 283 (381)
T ss_pred ------CCHHHhC-------------cchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CCceecceehhhhhh
Confidence 0111111 011124678899999999999999999999999998 788899999999998
Q ss_pred hHhhccCccc
Q 006517 628 EHVLGLYPHI 637 (642)
Q Consensus 628 ~~~~~~~~~~ 637 (642)
...+..+..+
T Consensus 284 l~~~~~~~~~ 293 (381)
T KOG1764|consen 284 LAREGTYNNL 293 (381)
T ss_pred hhhcCccCcc
Confidence 7776665544
No 178
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.34 E-value=0.00033 Score=61.90 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=51.0
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
..++.++|.+++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+|+++|+.+
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-----~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDD-----GKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----CcEEEEEEHHHhhc
Confidence 457889999899999999999999999999999999999986 89999999999864
No 179
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00042 Score=59.84 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=50.0
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
..+++++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 58 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~------~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG------GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC------CEEEEEEEHHHhhc
Confidence 45789999889999999999999999999999999999987 79999999999863
No 180
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.32 E-value=0.00036 Score=59.98 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=48.7
Q ss_pred cccccccccCCeEEecC-cccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSG-VEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~-~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
+.++.++|.+++..+.. ++++.++++.|.+++++.+||+|++ ++++|+|+++|+.+
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDE-----GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-----CCEEEEEEhhhhhc
Confidence 35788999877666666 9999999999999999999999986 89999999999863
No 181
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.31 E-value=0.00041 Score=59.90 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=49.9
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
..+++++|.+++..+++++++.++++.|.+++...+||+|+ ++++|+++.+|+.+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG------GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC------CEEEEEEEhHHhhc
Confidence 45688999999999999999999999999999999999986 79999999999863
No 182
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.31 E-value=0.00034 Score=60.66 Aligned_cols=55 Identities=18% Similarity=0.383 Sum_probs=49.9
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
..++.++|.+++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD------GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC------CEEEEEEEHHHHhc
Confidence 45688999989999999999999999999999889999987 79999999999864
No 183
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.31 E-value=0.00039 Score=60.58 Aligned_cols=57 Identities=21% Similarity=0.386 Sum_probs=50.1
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|++ +.++++|+|+++|+.+
T Consensus 58 ~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~---~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRG---NPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCC---CCCeEEEEEEhHHhhc
Confidence 34788999999999999999999999999999999999874 2268999999999864
No 184
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.30 E-value=0.00037 Score=73.06 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=51.4
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.+++|+|++++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+.+
T Consensus 263 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----~~lvGvIt~~di~~ 317 (321)
T PRK11543 263 TPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDEN-----GKLTGAINLQDFYQ 317 (321)
T ss_pred CcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEHHHHHh
Confidence 45889999999999999999999999999999999999987 89999999999975
No 185
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.30 E-value=0.00037 Score=61.18 Aligned_cols=56 Identities=30% Similarity=0.560 Sum_probs=50.8
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
...++.++|.+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD------GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC------CEEEEEEEHHHhhc
Confidence 456788999999999999999999999999999999999987 79999999999863
No 186
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.30 E-value=0.00062 Score=60.50 Aligned_cols=51 Identities=25% Similarity=0.415 Sum_probs=45.4
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhhc
Q 006517 579 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLG 632 (642)
Q Consensus 579 ~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~~ 632 (642)
++.++++++++.++.+.|++.+.+++||+|+ +++++|++|.+|+++...++
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~~~~Gii~~~dl~~~~~~~ 53 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SGKILGMVTLGNLLSSLSSG 53 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCCEEEEEEHHHHHHHHHHh
Confidence 5678999999999999999999999999997 78999999999999755543
No 187
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.00033 Score=60.96 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=47.9
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
+.+++++|.+++.++++++++.++++.|.+++ .+||+|++ ++++|++|++|+++
T Consensus 62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~-----~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDD-----GIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCC-----CeEEEEEEHHHhhc
Confidence 45788999999999999999999999998754 59999987 89999999999864
No 188
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.29 E-value=0.00042 Score=75.86 Aligned_cols=59 Identities=24% Similarity=0.241 Sum_probs=54.4
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhc
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 522 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~ 522 (642)
.+++|+|++++.++++++++.|+++.|.+++.+.+||+|++ ++++|+||++||.+....
T Consensus 148 ~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-----g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 148 TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDAD-----GRLVGVLTRTGALRATIY 206 (479)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-----CeEEEEEEHHHHHHHhhC
Confidence 46899999999999999999999999999999999999987 899999999999986554
No 189
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.28 E-value=0.00043 Score=59.65 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=49.5
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++++|+.
T Consensus 55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~i~~~dl~ 108 (110)
T cd04588 55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-----GRPVGIITRTDIL 108 (110)
T ss_pred cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCC-----CCEEEEEEhHHhh
Confidence 46788898899999999999999999999999999999986 8999999999986
No 190
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.28 E-value=0.00049 Score=59.29 Aligned_cols=55 Identities=27% Similarity=0.412 Sum_probs=50.3
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.++.++|.+++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++..|+.+
T Consensus 56 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDS-----GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC-----CCEEEEEEHHHhhh
Confidence 46788999999999999999999999999999999999986 89999999999864
No 191
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.28 E-value=0.00046 Score=59.55 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=50.1
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
+.++.++|.+++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD------GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEHHHhhc
Confidence 35688999999999999999999999999999999999987 79999999999864
No 192
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.00048 Score=61.78 Aligned_cols=56 Identities=14% Similarity=0.353 Sum_probs=50.5
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
...++.++|.+++..+++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 76 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD------GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC------CEEEEEEEHHHhhc
Confidence 344788999999999999999999999999999999999987 79999999999863
No 193
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.26 E-value=0.00031 Score=61.10 Aligned_cols=55 Identities=18% Similarity=0.359 Sum_probs=48.3
Q ss_pred cccccccccC--CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 458 NLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 458 ~~~V~diM~~--~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
+.++.++|.+ ++.++.+++++.++++.|.+++.+.+||+|++ ++++|+++.+|+.
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~-----~~~~Gvl~~~di~ 112 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDS-----GQVIGLITEADLL 112 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCC-----CcEEEEEecccee
Confidence 3567888875 36789999999999999999999999999986 8999999999875
No 194
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.25 E-value=0.00054 Score=59.03 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=49.2
Q ss_pred cccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 460 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 460 ~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
+++++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+++++|+.+
T Consensus 56 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAE-----NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCC-----CcEEEEEEHHHhhh
Confidence 4778898899999999999999999999988999999986 89999999999863
No 195
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.25 E-value=0.00043 Score=59.23 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=48.0
Q ss_pred cccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 460 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 460 ~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
++.++|.++..++++++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------GKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------CEEEEEEEHHHhhc
Confidence 467888888999999999999999999999999999985 89999999999863
No 196
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.24 E-value=0.00054 Score=58.38 Aligned_cols=53 Identities=15% Similarity=0.315 Sum_probs=48.9
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|++|.+|+.
T Consensus 51 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE------RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------CEEEEEEEHHHhc
Confidence 4578899999999999999999999999999999999987 7999999999985
No 197
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.23 E-value=0.00054 Score=75.56 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=55.2
Q ss_pred cccccccccCC--eEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhc
Q 006517 458 NLVASDVVSGP--LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 522 (642)
Q Consensus 458 ~~~V~diM~~~--~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~ 522 (642)
+.+|+++|+++ ++++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+.+.+..
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-----g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-----GELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEHHHHHHHhhC
Confidence 46799999976 8899999999999999999999999999987 899999999999987764
No 198
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.22 E-value=0.00054 Score=59.15 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=48.9
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
.++.++|.+++.++++++++.++.+.|.+++...+||+|+ ++++|+|++.|+.
T Consensus 57 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~~di~ 109 (111)
T cd04626 57 KKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD------NKLIGVVRTKDIL 109 (111)
T ss_pred CcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEhHHhc
Confidence 4688899999999999999999999999999999999987 7999999999985
No 199
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.22 E-value=0.00059 Score=59.36 Aligned_cols=52 Identities=17% Similarity=0.375 Sum_probs=48.8
Q ss_pred cccccccCCeEEecCcccHHHHHHHHhh-CCCCceeEeeCCCCCCCC-eEEEEEeHHHH
Q 006517 460 VASDVVSGPLITFSGVEKVGNIMHALRL-TRHNGFPVIDEPPLTPAP-ELCGLVLRSHL 516 (642)
Q Consensus 460 ~V~diM~~~~~~v~~~~tv~~~~~~l~~-~~~~~~PVVd~~~~~~~~-~lvGiIt~~dL 516 (642)
++.++|.+++.++.+++++.++.+.|.+ ++.+.+||+|++ + +++|+++++|+
T Consensus 63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~-----~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDD-----GGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC-----CCeEEEEEEHHHc
Confidence 6899999999999999999999999999 699999999986 6 99999999986
No 200
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.22 E-value=0.00062 Score=60.48 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=46.9
Q ss_pred cccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 462 SDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 462 ~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.+.|.+++.++++++++.++.+.|.+++.+.+||+|++ ++++|+||.+|+.+
T Consensus 74 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-----~~~~Giit~~dil~ 125 (126)
T cd04642 74 DGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEE-----GKPIGVITLTDIIS 125 (126)
T ss_pred cccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-----CCEEEEEEHHHHhc
Confidence 35677789999999999999999999998999999986 89999999999864
No 201
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.18 E-value=0.00065 Score=58.70 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=49.3
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
.++.++|.+++.++++++++.++.+.|.+++...+||+|++ ++++|+++++|+.
T Consensus 57 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----g~~~Gilt~~dl~ 110 (112)
T cd04624 57 TPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG-----GELVGVISIRDLV 110 (112)
T ss_pred cCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCC-----CcEEEEEEHHHhc
Confidence 46789999999999999999999999998888899999986 8999999999986
No 202
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.17 E-value=0.00064 Score=59.82 Aligned_cols=55 Identities=25% Similarity=0.276 Sum_probs=50.4
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.++.++|.+++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|+.+
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-----~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDEN-----GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-----CCEEEEEEHHHhhh
Confidence 46889999999999999999999999999999999999886 89999999999864
No 203
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.16 E-value=0.00067 Score=58.30 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=45.3
Q ss_pred cccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 464 VVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 464 iM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
+|.+++.++++++++.++.+.|.+++.+.+||+++ ++++|+++++|+.+
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------GRLVGIITRKDLLK 104 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC------CeEEEEEEhhhhhc
Confidence 78889999999999999999999999999999965 89999999999864
No 204
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.14 E-value=0.00075 Score=59.15 Aligned_cols=56 Identities=20% Similarity=0.395 Sum_probs=50.6
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
...++.++|.+++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 65 ~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED------GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC------CEEEEEEEHHHhhc
Confidence 456788999999999999999999999999999999999986 78999999999864
No 205
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.00089 Score=59.54 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=49.7
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
+.++.++|.++++++++++++.++++.|.+++...+||++++ ++++++|+|+++|+.+
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~---~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD---DDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC---CCCcEEEEEEhHhhhc
Confidence 457889999999999999999999999999988889998531 2389999999999863
No 206
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.95 E-value=0.0011 Score=72.95 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=53.8
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhh
Q 006517 569 FVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 631 (642)
Q Consensus 569 ~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~ 631 (642)
..+++++|++++.++.+++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+++...+
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AGKVLGSVTLRELLSALFA 393 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEHHHHHHHHhc
Confidence 46788999999999999999999999999999999999997 7899999999999875543
No 207
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.92 E-value=0.0018 Score=56.62 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=47.8
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCC---ceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHN---GFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~---~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
.+.++.++|.+++..+++++++.++.+.|.+++.. ..||+|++ ++++|+|+.+|+.
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~-----~~~~Gvvs~~di~ 117 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE-----GRYLGIGTVKDLL 117 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-----CeEEEEEEHHHHh
Confidence 34578999999999999999999999999887653 44688876 8999999999986
No 208
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.91 E-value=0.0013 Score=67.12 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=52.4
Q ss_pred ccccccccccC-CceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhH
Q 006517 569 FVDLHPITNTS-PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 629 (642)
Q Consensus 569 ~~~l~~im~~~-~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~ 629 (642)
...++++|+++ +.++++++++.++.+.|.+.+.+.+||+|+ +|+++|+||.+|+.+..
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CCCEEEEEEcHHHHHHH
Confidence 36788999888 899999999999999999999999999997 78999999999998754
No 209
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.86 E-value=0.0026 Score=54.20 Aligned_cols=52 Identities=27% Similarity=0.277 Sum_probs=45.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhhcc
Q 006517 579 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGL 633 (642)
Q Consensus 579 ~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~~~ 633 (642)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++++|+++....+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~G~v~~~~l~~~~~~~~ 53 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DGRLVGIVTERDLLRALAEGG 53 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC---CCCEEEEEeHHHHHHHHHhcc
Confidence 3467889999999999999999999999997 689999999999998665543
No 210
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.86 E-value=0.0021 Score=55.35 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=44.2
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCC-CCeEEEEehhhcchhHhh
Q 006517 579 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR-PPIVGILTRHDFMPEHVL 631 (642)
Q Consensus 579 ~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~-g~lvGIITr~Dll~~~~~ 631 (642)
+..++++++++.++.+.|.+.+...+||+|+ + ++++|++|.+|+.+...+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~---~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG---DLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC---CCceEEEEEEHHHHHHHHHc
Confidence 4568899999999999999999999999997 6 899999999999976543
No 211
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.85 E-value=0.0013 Score=72.62 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=54.0
Q ss_pred cccccccccC--CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHh
Q 006517 458 NLVASDVVSG--PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLK 521 (642)
Q Consensus 458 ~~~V~diM~~--~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~ 521 (642)
+.+++|+|++ +++++++++++.|+.+.|.+++.+.+||+|++ ++++|+||++|+.+...
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-----g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-----GELVALVSRSDLKKNRG 218 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-----CcEEEEEEehHhhhccc
Confidence 4679999998 89999999999999999999999999999987 89999999999987643
No 212
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0024 Score=69.17 Aligned_cols=97 Identities=19% Similarity=0.104 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCCCCcccchhHHHHHHHHhhHHHHhhhc-----------c-cCCChhHHHHHHhhhhhcccccchhhH
Q 006517 333 VAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGA-----------L-SDLDTGLFALLGAASFLGGTMRMTVSL 400 (642)
Q Consensus 333 ~~k~~~t~~t~g~g~~GG~f~P~l~iGA~~G~~~g~~~~~-----------~-~~~~~~~~alvG~aa~~ag~~~~pls~ 400 (642)
+.|.+-...+.+.|...|-..|++-.||+++..+|+-=.. + .+-+-.-+..+|+||..||+.|+|+..
T Consensus 190 ~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGG 269 (762)
T KOG0474|consen 190 IVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGG 269 (762)
T ss_pred HHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccc
Confidence 4799999999999999999999999999999999875332 1 244667799999999999999999999
Q ss_pred hhHHHhhcCCc---ccHHHHHHHHHHHHHHHh
Q 006517 401 CVILLELTNNL---LMLPLVMLVLLISKTVAD 429 (642)
Q Consensus 401 ~vi~~Eltg~~---~~l~p~~~~~~~a~~~~~ 429 (642)
+++.+|---++ .++-=+.+++.++.++-+
T Consensus 270 vLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 270 VLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred eEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 99999955443 244444455555544444
No 213
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.81 E-value=0.0023 Score=56.77 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=41.9
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcch
Q 006517 579 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627 (642)
Q Consensus 579 ~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~ 627 (642)
++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CCcEEEEEEHHHHhh
Confidence 4568899999999999999999999999997 789999999999885
No 214
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.77 E-value=0.0022 Score=54.90 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=45.6
Q ss_pred ccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 459 ~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
.++.++|.+++.++++++++.++.+.|.+ .. ..||+|++ ++++|+++++|+.+
T Consensus 57 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~-----~~~~Gvvt~~di~~ 109 (110)
T cd04609 57 LPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEG-----GKFVGIITRADLLK 109 (110)
T ss_pred cCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecC-----CeEEEEEeHHHhhc
Confidence 56888998889999999999999999988 33 47899876 89999999999863
No 215
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.77 E-value=0.0025 Score=54.48 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=47.6
Q ss_pred cccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 460 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 460 ~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
++.++|.+++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHhhc
Confidence 467788888999999999999999999999999999985 79999999999863
No 216
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.74 E-value=0.0027 Score=57.84 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=49.6
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~ 517 (642)
..++.++|.+++.++++++++.++.+.|.+++...+||+|+ ++++|+++.+|+.
T Consensus 88 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~~Gvvt~~dl~ 141 (143)
T cd04634 88 KMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED------GRLVGIVTRGDII 141 (143)
T ss_pred cCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHhh
Confidence 45788999999999999999999999999999999999987 7999999999986
No 217
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.72 E-value=0.0017 Score=69.75 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=55.9
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhhccCcc
Q 006517 571 DLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPH 636 (642)
Q Consensus 571 ~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~~~~~~ 636 (642)
.+.+.++.++++|++++|+.+|...|.+.|.+.+.|+|+ +++..||||++|+.+....+..+.
T Consensus 150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~~~~GIvT~~dl~~~v~~~g~~~ 212 (610)
T COG2905 150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SGPLLGIVTRKDLRSRVIADGRSK 212 (610)
T ss_pred HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CCCccceeehHHHHHHHHhcCCCc
Confidence 466788899999999999999999999999999999987 889999999999999877755443
No 218
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.69 E-value=0.0027 Score=69.48 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=50.2
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCC---CCeEEEEehhhcch
Q 006517 569 FVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR---PPIVGILTRHDFMP 627 (642)
Q Consensus 569 ~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~---g~lvGIITr~Dll~ 627 (642)
..++++.|.+++.++++++++.++.++|.+++.+.+||+|+ + ++++|+||.+|+..
T Consensus 79 Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~---~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 79 VKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVED---GDMTGKLVGIITKRDIRF 137 (450)
T ss_pred hccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC---CCCCCeEEEEEEHHHHhh
Confidence 34567788889999999999999999999999999999997 4 68999999999974
No 219
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0021 Score=69.32 Aligned_cols=61 Identities=11% Similarity=0.265 Sum_probs=57.0
Q ss_pred ccccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhc
Q 006517 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 522 (642)
Q Consensus 457 ~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~ 522 (642)
.+.+++|+|.+++++++++++.+++.+.+++++.-..||||++ ++++|+||.+|+...+++
T Consensus 194 ~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-----~~LiG~itiDDiidvi~e 254 (451)
T COG2239 194 PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDED-----NRLIGIITIDDIIDVIEE 254 (451)
T ss_pred cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCC-----CceeeeeeHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999998 999999999999988875
No 220
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.58 E-value=0.0029 Score=65.06 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=50.9
Q ss_pred cccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhc
Q 006517 460 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 522 (642)
Q Consensus 460 ~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~ 522 (642)
+++++|.+. .++++++++.++++.|++++.+..||+|+. |.++|+||.+|+++.+..
T Consensus 134 ~l~~l~r~~-~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~-----G~viGiVTleDIle~ivG 190 (292)
T PRK15094 134 SMDKVLRQA-VVVPESKRVDRMLKEFRSQRYHMAIVIDEF-----GGVSGLVTIEDILELIVG 190 (292)
T ss_pred CHHHHcCCC-cCcCCCCcHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEeEHHHHHHHHhC
Confidence 467888764 489999999999999999999999999987 889999999999987764
No 221
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.51 E-value=0.0035 Score=67.76 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=49.9
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhH
Q 006517 570 VDLHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 629 (642)
Q Consensus 570 ~~l~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~ 629 (642)
..++++|.+ ++++++.+++++|+.+.+.+++..++||.++ +.++++|+|+.+|++...
T Consensus 191 ~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~--~~d~ivGiv~~kDll~~~ 250 (408)
T TIGR03520 191 TDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE--TIDNITGVLYIKDLLPHL 250 (408)
T ss_pred CEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC--CCCceEEEEEHHHHHhHh
Confidence 456778875 6789999999999999999999999999985 236799999999999643
No 222
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.50 E-value=0.0064 Score=64.88 Aligned_cols=49 Identities=10% Similarity=0.166 Sum_probs=41.6
Q ss_pred ccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHh
Q 006517 577 NTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 630 (642)
Q Consensus 577 ~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~ 630 (642)
.++..++++|+++.+++....+.+.. ++|+| +|+++|+|++.++++.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~----~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE----NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCCCC-eEEee----CCeEEEEEeHHHHHHHHh
Confidence 44567889999999999999887765 78888 589999999999997664
No 223
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.42 E-value=0.0045 Score=62.44 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=79.1
Q ss_pred cccccccccccCC--eEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhccccccccccCC
Q 006517 456 MKNLVASDVVSGP--LITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG 533 (642)
Q Consensus 456 l~~~~V~diM~~~--~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~~~ 533 (642)
.+-++++++|.+. ...-.+...-..+.+.+.+...+.+.+++.+ ++.+|+++.++..+.
T Consensus 271 ~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-----~~~~g~v~~~~~~~~-------------- 331 (386)
T COG4175 271 SRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG-----NKFVGVVSIDSLVKA-------------- 331 (386)
T ss_pred hheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhcc-----CceeeEEeccchhcc--------------
Confidence 4556888888852 1112223344456677777666666677755 779999987766431
Q ss_pred cccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCC
Q 006517 534 SDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 613 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~ 613 (642)
.+.+.+.++.+|+++.+.+....+.... ++|+|+ +
T Consensus 332 -----------------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde---~ 366 (386)
T COG4175 332 -----------------------------------------ALIDDVLTVDADTPLSEILARIRQAPCP-VAVVDE---D 366 (386)
T ss_pred -----------------------------------------cccccccccCccchHHHHHHHHhcCCCc-eeEEcC---C
Confidence 1234556788999999999998887764 789998 8
Q ss_pred CCeEEEEehhhcchhHhh
Q 006517 614 PPIVGILTRHDFMPEHVL 631 (642)
Q Consensus 614 g~lvGIITr~Dll~~~~~ 631 (642)
++++|+|++.+++.....
T Consensus 367 ~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 367 GRYVGIISRGELLEALAR 384 (386)
T ss_pred CcEEEEecHHHHHHHHhc
Confidence 999999999999976543
No 224
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.00 E-value=0.012 Score=62.39 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=51.5
Q ss_pred cccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhc
Q 006517 460 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 522 (642)
Q Consensus 460 ~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~ 522 (642)
.+.+.|.+++.++++++++++++..+.++++. +||+|++ ++++|+|++.++.+.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDED-----QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCC-----CcEEEEEEHHHHHHHHHh
Confidence 46777888888999999999999999999988 9999987 999999999999988764
No 225
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.96 E-value=0.05 Score=58.54 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=50.3
Q ss_pred cccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhc
Q 006517 460 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 522 (642)
Q Consensus 460 ~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~ 522 (642)
.+++.+.++..++++++++++++..+.++... +||||++ ++++|+|++.++++.+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 338 GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDED-----QQYVGIISKGMLLRALDR 394 (400)
T ss_pred chhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCC-----CcEEEEEEHHHHHHHHHh
Confidence 46677777888999999999999999887665 9999987 999999999999998865
No 226
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.03 Score=58.06 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=52.5
Q ss_pred cccccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHH
Q 006517 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVL 519 (642)
Q Consensus 458 ~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~ 519 (642)
+..+.|+|+++.++.+...++.++.+++++++...+||||++ ++++-++++.||.+.
T Consensus 170 ~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-----gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 170 SLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDK-----GELVAMLSRTDLMKN 226 (503)
T ss_pred cchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccC-----Cceeeeeehhhhhhh
Confidence 467899999988999999999999999999999999999998 999999999999764
No 227
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.66 E-value=0.3 Score=54.69 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=55.4
Q ss_pred cccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhhccCc
Q 006517 568 MFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYP 635 (642)
Q Consensus 568 ~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~~~~~ 635 (642)
..+.++++|.++..++..+++..|..+.+....++.+|+||+ .++..++|.|.|+.+.....++.-+
T Consensus 586 h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esmiLlGSV~R~~L~~ll~~~ig~ 652 (931)
T KOG0476|consen 586 HTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESMILLGSVARRYLTALLQRHIGP 652 (931)
T ss_pred eEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC-cccceeeehhHHHHHHHHHHhhcCc
Confidence 346789999999999999999999999998887999999987 3356799999999998766654433
No 228
>PRK11573 hypothetical protein; Provisional
Probab=93.87 E-value=0.11 Score=56.36 Aligned_cols=58 Identities=5% Similarity=-0.040 Sum_probs=48.1
Q ss_pred cccccccc--cCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhH
Q 006517 570 VDLHPITN--TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 629 (642)
Q Consensus 570 ~~l~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~ 629 (642)
..++++|. .+...++.+++++++.+++.+.+..++||.++ +.++++|+|..+|+++..
T Consensus 187 ~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~--~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 187 VTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRD--SLDDAISMLRVREAYRLM 246 (413)
T ss_pred CChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcC--CCCceEEEEEHHHHHHHh
Confidence 34566775 35678999999999999999999999999975 236799999999998643
No 229
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=92.69 E-value=0.19 Score=55.13 Aligned_cols=126 Identities=19% Similarity=0.148 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCccCCCHHHHHHHHhCCCCCCC-------------CccchHHHHHHHHHHHHhhCCcCCCchhHHHHHHH
Q 006517 17 AAILCAYIAPAAAGSGIPEVKAYLNGIDAHSI-------------LAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGAC 83 (642)
Q Consensus 17 ~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~-------------~~~~~~~~k~~~~~~~i~~G~s~G~EGP~v~iga~ 83 (642)
...+..++.|+.+=.+..-+....+.-....- +-...++.|++.++.+-|++.+.|---|+..+||+
T Consensus 356 iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~ 435 (696)
T KOG0475|consen 356 VTAIISLFNPETRFNMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAI 435 (696)
T ss_pred HHHHHHhcCHHHHhhHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHH
Confidence 34444567888887765556555543111111 11345689999999999999999999999999999
Q ss_pred HHHHhhccCccccchh-hhhhhccCChhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHHhh
Q 006517 84 IANLLGQGGSKKYHLT-WRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAAS 144 (642)
Q Consensus 84 ig~~~~~~~~~~~~l~-~~~~~~~~~~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~~~ 144 (642)
.|..+|-...+.++-+ |..+. .+-.-.......|+||-++.+-|-|+.-|+-.+|.+..
T Consensus 436 aGr~vG~~~e~l~~~~~~~~fg--~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~ 495 (696)
T KOG0475|consen 436 AGRAVGIIVEQLAQNPDFNLFG--LSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGA 495 (696)
T ss_pred HHHHHHHHHHHHhcCCCccccc--hhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCc
Confidence 9998874211111100 00000 01122355678999999999999999999999999875
No 230
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=92.53 E-value=0.47 Score=51.82 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=45.8
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhc
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 522 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~ 522 (642)
++..+++++++.++++.|++++.+-.-|+|+. |...|+||.+|+.+.+--
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy-----G~~~GlVTleDIiEeIvG 329 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEY-----GGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC-----CCeEEEeEHHHHHHHHhC
Confidence 78899999999999999999988888899998 999999999999987764
No 231
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=91.43 E-value=0.29 Score=54.08 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=85.6
Q ss_pred ccccccccccccC--CeEEecCcccHH-HHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhcccccccccc
Q 006517 455 YMKNLVASDVVSG--PLITFSGVEKVG-NIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTM 531 (642)
Q Consensus 455 ~l~~~~V~diM~~--~~~~v~~~~tv~-~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~~~~~~~~~~ 531 (642)
.+....++|+|++ ++..++.+..+. +......+++|+.+||.+++ ...+..|.+.. .+...+....
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~---~~~~i~~~L~~-~~~~~~~~~~------- 268 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQE---PKNKIGGLLVM-NLLRLLQVEV------- 268 (498)
T ss_pred HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCc---ccchhhHHHHh-hhhhhhcccc-------
Confidence 4667889999998 566666666655 55556678899999999875 22333332222 2222221100
Q ss_pred CCcccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEeeCCC
Q 006517 532 TGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTP 611 (642)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~ 611 (642)
.....++.+.+......+++++++.+..+.|++.+.+.+.|.+
T Consensus 269 ----------------------------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--- 311 (498)
T KOG2118|consen 269 ----------------------------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN--- 311 (498)
T ss_pred ----------------------------------ccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec---
Confidence 0112334555666677888999999999999987776555554
Q ss_pred CCCCeEEEEehhhcchhHhhccCcc
Q 006517 612 GRPPIVGILTRHDFMPEHVLGLYPH 636 (642)
Q Consensus 612 ~~g~lvGIITr~Dll~~~~~~~~~~ 636 (642)
...-+++++..|+ +...++...+
T Consensus 312 -~~~~~~~~~l~~~-~~~~~ev~de 334 (498)
T KOG2118|consen 312 -GHVDIFVLTLEDL-EEVVKEVEDE 334 (498)
T ss_pred -CCcceeeEeccch-hhhcceeccc
Confidence 4568899999998 6665444443
No 232
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=88.78 E-value=0.074 Score=51.28 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=48.3
Q ss_pred ccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhhc
Q 006517 572 LHPITNT--SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLG 632 (642)
Q Consensus 572 l~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~~ 632 (642)
++++|-+ .-++++.+.++++.+..+.+....+.||+.+ +++.+.||+-.||+++.+...
T Consensus 69 vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e--dkD~v~GIL~AKDLL~~~~~~ 129 (293)
T COG4535 69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKDHVEGILLAKDLLPFMRSD 129 (293)
T ss_pred HhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccC--CchhhhhhhhHHHHHHHhcCC
Confidence 4555542 3468899999999999999999999999976 256799999999999876544
No 233
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=88.74 E-value=0.85 Score=48.80 Aligned_cols=54 Identities=7% Similarity=0.125 Sum_probs=44.3
Q ss_pred cccccccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHh
Q 006517 460 VASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLK 521 (642)
Q Consensus 460 ~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~ 521 (642)
++.+ +.++..++++++++.+++....++++ -+||+|+ ++++|+|++.+++..+.
T Consensus 327 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~------~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 327 EVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN------GRIVGVIGDDNIYHALL 380 (382)
T ss_pred chhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC------CeEEEEEeHHHHHHHHh
Confidence 3455 55678899999999999998888665 4778875 89999999999998775
No 234
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=82.82 E-value=2.2 Score=43.62 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=45.1
Q ss_pred cccCCeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHHhc
Q 006517 464 VVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKG 522 (642)
Q Consensus 464 iM~~~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l~~ 522 (642)
.+.+++.+++.++++.+......+.+ .-+||+|++ ++++|++++.+++.++..
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~-----~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQAP-CPVAVVDED-----GRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccccccCccchHHHHHHHHhcCC-CceeEEcCC-----CcEEEEecHHHHHHHHhc
Confidence 56667889999999999999887765 358899998 999999999999988754
No 235
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=80.15 E-value=1.3e+02 Score=35.50 Aligned_cols=83 Identities=19% Similarity=0.347 Sum_probs=44.9
Q ss_pred HHHHHhhHHHHhhhcccCCChhHHHHHHhhhhhcccccch----------hhHhhHHHhhcCCcccHHHHHHHHHHHHHH
Q 006517 358 AGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMT----------VSLCVILLELTNNLLMLPLVMLVLLISKTV 427 (642)
Q Consensus 358 iGA~~G~~~g~~~~~~~~~~~~~~alvG~aa~~ag~~~~p----------ls~~vi~~Eltg~~~~l~p~~~~~~~a~~~ 427 (642)
+||+.|...|.++.......+....+.|.++++||..|-. ++.+++.+=..++.++.. .+.-+++|..+
T Consensus 197 ~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~~~-~~~e~~ia~~l 275 (764)
T TIGR02865 197 AGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAFSL-ALYEALIATLL 275 (764)
T ss_pred HhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHH
Confidence 5778888888777543344555566667777777776621 333344443434433222 22344444444
Q ss_pred HhhcCchHHHHHHH
Q 006517 428 ADSFNQGVYDQIVK 441 (642)
Q Consensus 428 ~~~~~~~iy~~~l~ 441 (642)
--.+++.+|+...+
T Consensus 276 Fll~P~~~~~~~~~ 289 (764)
T TIGR02865 276 FLLIPNKIYKKLER 289 (764)
T ss_pred HHHhhHHHHHHHHh
Confidence 33336677776543
No 236
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=79.03 E-value=4 Score=42.54 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=42.6
Q ss_pred CeEEecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHHHH
Q 006517 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 520 (642)
Q Consensus 468 ~~~~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~~l 520 (642)
++..+++.+++.+-++.|++++.+--.|||+. |.+.|+||.+|+++-+
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY-----G~i~GLVTLEDIlEEI 323 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY-----GDIQGLVTLEDILEEI 323 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEecc-----CcEEeeeeHHHHHHHH
Confidence 57789999999999999998887777899998 9999999999998654
No 237
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=76.86 E-value=3.6 Score=40.90 Aligned_cols=40 Identities=25% Similarity=0.179 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchh
Q 006517 586 TMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPE 628 (642)
Q Consensus 586 ~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~ 628 (642)
.....+++..+...+...+||+|+ +|+++|.||+.|++..
T Consensus 269 ~~~~~~~ls~~~~~~~~~~~Vvd~---~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 269 GFVDRDALSDFLARGRSVLPVVDE---DGRPLGTVTRADLLDE 308 (309)
T ss_pred chhhHHHHHHHHhcCCceeEEECC---CCcEeeEEEHHHHhhh
Confidence 444556888888899999999998 8999999999999853
No 238
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=75.74 E-value=3.9 Score=40.68 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=39.7
Q ss_pred cccccccccccCCeE----EecCcccHHHHHHHHhhCCCCceeEeeCCCCCCCCeEEEEEeHHHHHH
Q 006517 456 MKNLVASDVVSGPLI----TFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518 (642)
Q Consensus 456 l~~~~V~diM~~~~~----~v~~~~tv~~~~~~l~~~~~~~~PVVd~~~~~~~~~lvGiIt~~dL~~ 518 (642)
+...++.|.|.+... .+.....-++++..+...+...+||+|++ ++++|.+++.++..
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~-----g~~~G~vt~~~l~~ 307 (309)
T COG1125 246 LSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDED-----GRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCC-----CcEeeEEEHHHHhh
Confidence 445566666655221 22233344556666667778899999998 99999999999864
No 239
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=55.71 E-value=18 Score=41.71 Aligned_cols=147 Identities=7% Similarity=0.029 Sum_probs=79.9
Q ss_pred CchHHHHHHHhcCC--CccccccccccccccccccccCCeEEecCccc-HHHHHHHHhhCCCCceeEeeCCCCCCCCeEE
Q 006517 432 NQGVYDQIVKLKGL--PYLEAHAEPYMKNLVASDVVSGPLITFSGVEK-VGNIMHALRLTRHNGFPVIDEPPLTPAPELC 508 (642)
Q Consensus 432 ~~~iy~~~l~~~g~--~~~~~~~~~~l~~~~V~diM~~~~~~v~~~~t-v~~~~~~l~~~~~~~~PVVd~~~~~~~~~lv 508 (642)
.+.|.+.|.+.+.. |.... ....+......+.+.++-..+....+ +.++.+.+...+ ..+.+.|++ |.++
T Consensus 13 ~~~I~~SW~Rc~~~~~p~~~~-~~~~l~~~~~~~~~~~~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~-----G~vL 85 (638)
T PRK11388 13 SPLIATSWERCNKLMKRETWN-VPHQAQGVTFASIYRRKKALLTLGQAALEDAWEYMADRE-CALLILDET-----GCIL 85 (638)
T ss_pred ChHHHHHHHHHHhcCCCcccC-CCCcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCC-----ceEE
Confidence 35677777777643 22111 11233334455555554444444445 566666776666 678889987 9999
Q ss_pred EEEeHHHHHHHHhccccccccccCCcccccccchhhhcccCCCCCccccccccchhhhhcccccccccccCCceecCCCC
Q 006517 509 GLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMS 588 (642)
Q Consensus 509 GiIt~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~im~~~~~~v~~~~~ 588 (642)
......++.+.+.+..+.....-.+ +..-++ .. .. .+....|+.|...+.
T Consensus 86 ~~~g~~~~~~~~~~~~~~~G~~w~E------------------------~~~GTn-ai----g~-al~~~~pv~v~g~EH 135 (638)
T PRK11388 86 SRNGDPQTLQQLSALGFNDGTYCAE------------------------GIIGTN-AL----SL-AAISGQPVKTMGDQH 135 (638)
T ss_pred EEeCCHHHHHHHHHcCCccCCccch------------------------hccCcC-HH----HH-HHhcCCceEEecHHH
Confidence 9988888876554422211100000 000000 00 00 011245566655554
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEe
Q 006517 589 LAKAAVLFRQLALRHLCVVPKTPGRPPIVGILT 621 (642)
Q Consensus 589 l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIIT 621 (642)
..+ .+........||.|. +|+++|+|+
T Consensus 136 ~~~---~~~~~~c~aaPI~d~---~G~liGvl~ 162 (638)
T PRK11388 136 FKQ---ALHNWAFCATPVFDS---KGRLTGTIA 162 (638)
T ss_pred HHH---hccCceEEeeEEEcC---CCCEEEEEE
Confidence 443 344556678999997 799999996
No 240
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=52.49 E-value=12 Score=23.24 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=19.4
Q ss_pred hhhHHHHHhhhhhhhhhhcCCcc
Q 006517 111 DRRDLITCGAAAGVAGAFRAPVG 133 (642)
Q Consensus 111 ~~r~l~~~G~aaGiaa~F~aPi~ 133 (642)
.||+++-.+++++.++++..+.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 58999999999999998887754
No 241
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.73 E-value=25 Score=30.92 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=16.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 006517 196 SYSSADLLAVIFLGVIGGIFGSFY 219 (642)
Q Consensus 196 ~~~~~~l~~~i~lgi~~gl~g~~f 219 (642)
.|+-.. +..|++|+++|++|.++
T Consensus 60 ~fs~~~-i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 60 RFSEPA-IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp SSS-TC-HHHHHHHHHHHHHHHHH
T ss_pred Cccccc-eeehhHHHHHHHHHHHH
Confidence 343333 36788999999998775
No 242
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=45.54 E-value=18 Score=39.46 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeeCCCCCCCeEEEEehhhcchhHhhccCccccc
Q 006517 586 TMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHIVN 639 (642)
Q Consensus 586 ~~~l~ea~~~~~~~~~~~lpVvd~~~~~g~lvGIITr~Dll~~~~~~~~~~~~~ 639 (642)
...++.+.+...+.|-.-++|++ +++++|+|..+|+++.-.+|.+.++++
T Consensus 412 p~~l~~~~~~vs~~GGTPL~V~~----~~~~~GVI~LkDivK~Gi~ERf~elR~ 461 (681)
T COG2216 412 PEDLDAAVDEVSRLGGTPLVVVE----NGRILGVIYLKDIVKPGIKERFAELRK 461 (681)
T ss_pred CHHHHHHHHHHHhcCCCceEEEE----CCEEEEEEEehhhcchhHHHHHHHHHh
Confidence 34678888999999988899998 689999999999999888877777664
No 243
>PRK01844 hypothetical protein; Provisional
Probab=33.44 E-value=1e+02 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006517 200 ADLLAVIFLGVIGGIFGSFYN 220 (642)
Q Consensus 200 ~~l~~~i~lgi~~gl~g~~f~ 220 (642)
+.++..++++++.|+++.+|.
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444556677888888888874
No 244
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=32.79 E-value=2.1e+02 Score=26.42 Aligned_cols=33 Identities=9% Similarity=-0.024 Sum_probs=21.0
Q ss_pred hhhhhHHHHHhhhhhhhhhhcCCcchhhHHHHHH
Q 006517 109 DRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEA 142 (642)
Q Consensus 109 ~~~~r~l~~~G~aaGiaa~F~aPi~G~lFa~E~~ 142 (642)
.++...-++.|.|+|+-..|- |+-|.-+.+=..
T Consensus 12 ~~~tP~~iA~g~a~Gvf~g~~-P~~glh~~~~~~ 44 (154)
T TIGR03546 12 SNTSPAQLALAVALGMILGLT-PFLNLHNIALLF 44 (154)
T ss_pred CCCCHHHHHHHHHHHHHHHhc-cchhHHHHHHHH
Confidence 345566778888888888774 555555444433
No 245
>PRK10490 sensor protein KdpD; Provisional
Probab=29.06 E-value=4.6e+02 Score=31.72 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=21.5
Q ss_pred ccCCCceeEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 006517 179 LFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFY 219 (642)
Q Consensus 179 ~~~~~~~~~f~~~~~~~~~~~~~l~~~i~lgi~~gl~g~~f 219 (642)
+|-..|...|.+.. + -.+..+..++++|++.|.+..-.
T Consensus 461 fFF~~P~~Tf~v~~--~-~~~~t~~v~l~va~v~~~l~~r~ 498 (895)
T PRK10490 461 LFFVAPRGTLAVSD--V-QYLLTFAVMLTVGLVIGNLTAGV 498 (895)
T ss_pred heeCCCceEEEEcC--c-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666652 1 23455666666777766555444
No 246
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.00 E-value=1.9e+02 Score=24.83 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 006517 199 SADLLAVIFLGVIGGIF 215 (642)
Q Consensus 199 ~~~l~~~i~lgi~~gl~ 215 (642)
+|-++.++++|..+|++
T Consensus 74 PwglIv~lllGf~AG~l 90 (116)
T COG5336 74 PWGLIVFLLLGFGAGVL 90 (116)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 46677777777766654
No 247
>smart00594 UAS UAS domain.
Probab=27.57 E-value=43 Score=29.28 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=43.6
Q ss_pred cccccccccccccCCeEEecCcccHHHHHHHHhhCCCCcee---EeeCCCCC----CCCeEEEEEeHHHHHHHH
Q 006517 454 PYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFP---VIDEPPLT----PAPELCGLVLRSHLLVLL 520 (642)
Q Consensus 454 ~~l~~~~V~diM~~~~~~v~~~~tv~~~~~~l~~~~~~~~P---VVd~~~~~----~~~~lvGiIt~~dL~~~l 520 (642)
..+.+-.|.+.++++++....+.+-.+..++....+.+++| ++|.+... -.+++-|.++.+++...|
T Consensus 48 ~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 48 DVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 34667788888888888877666656667777777777777 56654100 023566777777776543
No 248
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.20 E-value=1.6e+02 Score=23.03 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006517 200 ADLLAVIFLGVIGGIFGSFYN 220 (642)
Q Consensus 200 ~~l~~~i~lgi~~gl~g~~f~ 220 (642)
+-.++.++++++.|+++.+|.
T Consensus 4 ~lail~ivl~ll~G~~~G~fi 24 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344467788888888888774
No 249
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=21.52 E-value=1.3e+03 Score=26.67 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=11.5
Q ss_pred HhhhhhhhhhhcCCcchhh-HHHHH
Q 006517 118 CGAAAGVAGAFRAPVGGVL-FALEE 141 (642)
Q Consensus 118 ~G~aaGiaa~F~aPi~G~l-Fa~E~ 141 (642)
.|.+|.+.+.|+- ==|++ |++..
T Consensus 527 ~~~~a~i~g~~gI-TEpaIPfgv~~ 550 (631)
T PRK09765 527 TGKSTWLLGLAGI-TEGAIPMAIED 550 (631)
T ss_pred HHHHHHHHHHHhc-CcccHHHHHhc
Confidence 4556666665541 12444 55544
No 250
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=20.47 E-value=1.7e+02 Score=33.97 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccCCchhHHHHHHHHHHhhhhhcccccc
Q 006517 205 VIFLGVIGGIFGSFYNYLVDKVLRTY-SIINERGPIFKVLLVAAVSLLTSCCSYGLPWL 262 (642)
Q Consensus 205 ~i~lgi~~gl~g~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~ 262 (642)
.+++++++|++|.+.-....++.... ..+....+++-++.++.+++++|++.=++|..
T Consensus 576 s~~l~~~GGiiGi~lg~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~vGl~~GlyPA~ 634 (648)
T PRK10535 576 AVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLSAFLCSTVTGILFGWLPAR 634 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 57899999999998887655544332 22222234556677777888888876666754
Done!