Query 006517
Match_columns 642
No_of_seqs 250 out of 2697
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 18:24:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006517.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2145-2148//hhsearch_pdb/006517hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3org_A CMCLC; transporter, tra 1.0 1 1 679.7 36.8 561 2-633 51-627 (632)
2 1ots_A Voltage-gated CLC-type 1.0 1 1 506.3 35.5 368 3-443 79-452 (465)
3 4ene_A CLC-EC1, H(+)/CL(-) exc 1.0 1 1 502.2 36.5 363 7-443 68-437 (446)
4 3nd0_A SLL0855 protein; CLC fa 1.0 1 1 501.2 34.3 360 7-443 79-444 (466)
5 3org_A CMCLC; transporter, tra 1.0 1 1 148.5 16.0 193 197-431 6-211 (632)
6 4esy_A CBS domain containing m 1.0 1 1 148.5 6.0 151 455-633 14-164 (170)
7 2d4z_A Chloride channel protei 1.0 1 1 144.0 15.0 169 455-630 9-245 (250)
8 3pc3_A CG1753, isoform A; CBS, 1.0 1 1 143.5 12.3 161 427-635 352-515 (527)
9 3lhh_A CBS domain protein; str 1.0 1 1 131.9 13.5 130 455-636 38-169 (172)
10 3kxr_A Magnesium transporter, 1.0 1 1 131.5 12.0 128 456-638 51-181 (205)
No 1
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=1.00 E-value=1 Score=679.74 Aligned_cols=561 Identities=24% Similarity=0.392 Sum_probs=423.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 5167989999999999999997705766789999999881978--78877500678989988999850786788325999
Q 006517 2 GFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGID--AHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVH 79 (642)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~p~~~GsGip~v~~~l~~~~--~~~~~~~~~~~~k~~~~~~~i~~G~s~G~Egp~v~ 79 (642)
.|+.|+.+++.+++++++++++++|+++||||||+++++++.. .++++++|+++.|++++++++++|+|+|||||++|
T Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vq 130 (632)
T 3org_A 51 GYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVH 130 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGGGCBCSHHHHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 89999999999999999999961876678998999999927421245535299999999999999953877666542999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999887402585220002424201479344568998734322232103873115688999865321246899999999
Q 006517 80 TGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTA 159 (642)
Q Consensus 80 ~g~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~ 159 (642)
+|+++|+.++|. ..|+. .+.++.+||.+++||+|||+||+|||||||++|++|++.++|+.+++|++++++.
T Consensus 131 iGa~ig~~~~~~--~~f~~------~~~~~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~ 202 (632)
T 3org_A 131 IACIIAHQFYRL--GVFKE------LCTDRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSAL 202 (632)
T ss_dssp HHHHHHHHHTTS--HHHHH------HHHSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHCC------CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987420--12113------3589999999999898887899838840869999999888876877878999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999998898850786444478721688614788887857899999999999999999999999999997531102870
Q 006517 160 VVAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPI 239 (642)
Q Consensus 160 ia~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~lGi~~g~~g~~F~~~~~~~~~~~~~~~~~~~~ 239 (642)
+++++++.+..... ...+|+. .|++ ...+++.++ +++++|++||++|.+|++++++..+++ .+++...
T Consensus 203 ~a~~v~~~~~~~~~--~~~~~~~----~~~~---~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~~~~~~~~--~~~~~~~ 270 (632)
T 3org_A 203 SGAIVYELLYTTPL--VEAFEGT----NFDA---SDVSRTQTL-LYAILGALMGVLGALFIRCVRSIYELR--MRHYPGT 270 (632)
T ss_dssp HHHHHTTC---------------------------CCCCSCTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSSTTC
T ss_pred HHHHHHHHHCCCCC--CCCCCCC----CCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCH
T ss_conf 99999999626765--2011466----5554---577768999-999999999999999999999999999--9864343
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 25788899999854310254333355689988767878887888974345579986102455310684478885430699
Q 006517 240 FKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGT 319 (642)
Q Consensus 240 ~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~ 319 (642)
++++.+.+++++++.+. +|.. .|.. .+++. +++++++..
T Consensus 271 ~~~~~~~~~~~~~~~l~--~p~~-----------------~g~~----------~~~~~------------i~~l~~~~~ 309 (632)
T 3org_A 271 NRYFLVGVVALFASALQ--YPFR-----------------LFAL----------DPRAT------------INDLFKAVP 309 (632)
T ss_dssp CTHHHHHHHHHHHHHHT--TTC---------------------------------CHHH------------HHHHHSCC-
T ss_pred HHHHHHHHHHHHHHHHH--HHHH-----------------HCCC----------CHHHH------------HHHHHCCCC
T ss_conf 48999999999999999--8787-----------------5487----------67999------------999972786
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHCCCC
Q ss_conf ---862038899999999999998772587884320269899777766989853003-6-98726999997664210203
Q 006517 320 ---SKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL-S-DLDTGLFALLGAASFLGGTM 394 (642)
Q Consensus 320 ---~~~~~~~~l~~~~v~K~~~t~~t~g~G~~GG~~~P~l~iGa~~G~~~~~~~~~~-~-~~~~~~~a~iG~aa~~a~~~ 394 (642)
.....+..++++++.|+++|++|+|+|+|||+|+|++++||++|+++|.+++.. + ..+|+.||++||+|+++|++
T Consensus 310 ~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g~~~~~~~p~~~~p~~~a~vGmaa~~~~v~ 389 (632)
T 3org_A 310 LYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPGSYAVVGAAAFTAGVT 389 (632)
T ss_dssp ---------CCSSHHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 32345303899999999999999999828986010078899999999999999999677656528999999999999999
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEE
Q ss_conf 313667558976528851078999999999999963082178999996199854445344235442011356--883796
Q 006517 395 RMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVS--GPLITF 472 (642)
Q Consensus 395 ~~pls~~~i~~E~tg~~~~l~p~~ia~~~s~~vs~~l~~~iy~~~l~~~g~~~~~~~~~~~l~~l~V~dim~--~~~~~v 472 (642)
|+|++++ +++||||++++++|+|+++++|+.+++.+++++|+.++..+++|++++..++..++++|+|+|+ +++.++
T Consensus 390 ~ap~t~v-i~~E~tg~~~~~lpl~ia~~~a~~v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~~V~diM~p~~~v~~v 468 (632)
T 3org_A 390 RALSCAV-IIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHL 468 (632)
T ss_dssp CCTTHHH-HHHHHTCCCSCSHHHHHHHHHHHHHHHHHCCCHHHHHHHHTTCCEEEEECTTCCTTSBHHHHCBCTTTSCCB
T ss_pred HHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEE
T ss_conf 8799999-999992985679999999999999999847878789998648985223344420257699996057985585
Q ss_pred CCCCCHHHHHHHHH-HCCCCCEEEEECCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 17554889999972-07999123730899999992799886799999983263344666677310000001000013899
Q 006517 473 SGVEKVGNIMHALR-LTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSG 551 (642)
Q Consensus 473 ~~~~ti~e~~~~l~-~~~~~~~PVvd~~~~~~~~~lvGiIs~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (642)
+++++++|+.+.|. +++++.+||+|++ ++++|+|+++|+.+.+.+............+........++.+....
T Consensus 469 ~~~~t~~e~~~~~~~~~~~~~~PVvd~~-----~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (632)
T 3org_A 469 FPDSEPQHIKGILEKFPNRLVFPVIDAN-----GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEG 543 (632)
T ss_dssp CSSSCHHHHHHHHHHSTTCCEECBBCTT-----CBBCCEESHHHHTTTTTTC----------------------------
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEECC-----CEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHCCC
T ss_conf 6999499999999735896569999059-----96999988999999999875514254554451103689999754045
Q ss_pred CCCCCC---CCCCCH---HHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEHHHC
Q ss_conf 986544---555664---43301425534434697033179999999999998299589992089999986899830003
Q 006517 552 KGVKLE---DLDIKE---EEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 625 (642)
Q Consensus 552 ~~~~~~---~~~~~~---~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~lm~~~~~~~lpVvd~~~~~g~liGiIT~~Di 625 (642)
...... .....+ ...+...+++++|+++|+++++|++++|+.++|.+++.+++||+| +|+++|+||++|+
T Consensus 544 ~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve----~G~lvGIVT~~Dl 619 (632)
T 3org_A 544 LVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE----RGKLVGIVEREDV 619 (632)
T ss_dssp ---------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE----TTEEEEEEEGGGT
T ss_pred CCCCCCCCCHHHHCCCCEEEECCCCCCCHHHCCCCCEECCCCCHHHHHHHHHHCCCCEEEEEE----CCEEEEEEEHHHH
T ss_conf 788884310123125603761364324201057872446888599999999856887799988----9989999754467
Q ss_pred CHHHHHCC
Q ss_conf 05576330
Q 006517 626 MPEHVLGL 633 (642)
Q Consensus 626 l~~~~~~~ 633 (642)
++.+.++.
T Consensus 620 l~~~~~~~ 627 (632)
T 3org_A 620 AYGYSNSL 627 (632)
T ss_dssp EECCCC--
T ss_pred HHHHHHHH
T ss_conf 98873447
No 2
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=1.00 E-value=1 Score=506.29 Aligned_cols=368 Identities=27% Similarity=0.433 Sum_probs=312.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 16798999999999999999770576678999999988197878877500678989988999850786788325999999
Q 006517 3 FVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGA 82 (642)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~p~~~GsGip~v~~~l~~~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~Egp~v~~g~ 82 (642)
|++|+.+++.++++++++++++.|+++||||||+++++++. ++..++|+.+.|++++++++++|+|+|||||++|+|+
T Consensus 79 ~~~~~~~~~~~~ll~~~l~~~~~p~a~GsGip~v~~~l~~~--~~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa 156 (465)
T 1ots_A 79 LTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGG 156 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 99999999999999999999858644699967999998289--9887289999999999999951877677552999999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_conf 99887402585220002424201479344568998734322232103873115688999865321246--8999999999
Q 006517 83 CIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSAL--LWRTFFTTAV 160 (642)
Q Consensus 83 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~--~~~~~~~~~i 160 (642)
+++++++| ++|. ++++++|++++||+|||++|+||||+||++|++|++.++++.+. ++++++++.+
T Consensus 157 ~ig~~l~~-----------~~~l-~~~~~~r~li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~ 224 (465)
T 1ots_A 157 NIGRMVLD-----------IFRL-KGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIM 224 (465)
T ss_dssp HHHHHHHH-----------HTTC-CSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHH-----------HHCC-CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999999-----------8436-98899999999999999999978845999999999898604688999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999988988507864444787216886147888878578999999999999999999999999999975311028702
Q 006517 161 VAVVLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIF 240 (642)
Q Consensus 161 a~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~lGi~~g~~g~~F~~~~~~~~~~~~~~~~~~~~~ 240 (642)
+..+.+.+ +|.++ .|+++. ...+++.++++++++|++||++|.+|++++.+.+++++++.+.+.++
T Consensus 225 a~~v~~~~-----------~G~~~--~f~~~~-~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~ 290 (465)
T 1ots_A 225 STIMYRIF-----------NHEVA--LIDVGK-LSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITK 290 (465)
T ss_dssp HHHHHHHH-----------SCSCC--SSCCCC-CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHH-----------CCCCC--EEECCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99999998-----------59986--461477-77788999999999999999999999999999999997634687165
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 57888999998543102543333556899887678788878889743455799861024553106844788854306998
Q 006517 241 KVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTS 320 (642)
Q Consensus 241 ~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~ 320 (642)
+++.+.++++++++++++.|+. .|. +|+ .++.++++
T Consensus 291 ~~~~~~i~gl~~g~l~~~~P~~-----------------lG~------------G~~------------~i~~~~~~--- 326 (465)
T 1ots_A 291 WVLMGGAIGGLCGLLGFVAPAT-----------------SGG------------GFN------------LIPIATAG--- 326 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGG-----------------SSC------------STT------------HHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------CCC------------HHH------------HHHHHHCC---
T ss_conf 7999999999999999986725-----------------289------------299------------99999848---
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 62038899999999999998772587884320269899777766989853003---698726999997664210203313
Q 006517 321 KEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMT 397 (642)
Q Consensus 321 ~~~~~~~l~~~~v~K~~~t~~t~g~G~~GG~~~P~l~iGa~~G~~~~~~~~~~---~~~~~~~~a~iG~aa~~a~~~~~p 397 (642)
++.+..++.+++.|+++|++|+|+|+|||+|+|++++||++|+++|.+++.. ...+++.|+++||+|+++|++|+|
T Consensus 327 -~~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~alvGmaa~~a~v~raP 405 (465)
T 1ots_A 327 -NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAP 405 (465)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCH
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf -8349999999999999999998489871220788999999999999999997776545679999999999999998789
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHC
Q ss_conf 6675589765288510789999999999999630-821789999961
Q 006517 398 VSLCVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVKLK 443 (642)
Q Consensus 398 ls~~~i~~E~tg~~~~l~p~~ia~~~s~~vs~~l-~~~iy~~~l~~~ 443 (642)
+|++++++||||++++++|+|+++++|+.+++.+ ++++|+.+++++
T Consensus 406 lt~ivlv~Eltg~~~~llpl~ia~~iA~~v~~~~~~~~iY~~~l~~~ 452 (465)
T 1ots_A 406 LTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILART 452 (465)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999993987799999999999999999967998599999998
No 3
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=1.00 E-value=1 Score=502.20 Aligned_cols=363 Identities=27% Similarity=0.430 Sum_probs=302.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999999999997705766789999999881978788775006789899889998507867883259999999988
Q 006517 7 TSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIAN 86 (642)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~p~~~GsGip~v~~~l~~~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~Egp~v~~g~~i~~ 86 (642)
+.++..++++++++++++.|+++||||||+++++++. ++..++|+.+.|++++++++++|+|+|||||++|+|+++++
T Consensus 68 ~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~~l~~~--~~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~ 145 (446)
T 4ene_A 68 FLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGR 145 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSSCSHHHHHHHHHTC--SCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999999999999967645789978999998088--76542999999999999999548766775309899999999
Q ss_pred HHHCCCCCCCCHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf 740258522000242420147934456-89987343222321038731156889998653212--468999999999999
Q 006517 87 LLGQGGSKKYHLTWRWLRYFKNDRDRR-DLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRS--ALLWRTFFTTAVVAV 163 (642)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~~~~~r-~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~--~~~~~~~~~~~ia~~ 163 (642)
+++| ++|. +++++| .+++||+|||++|+||||++|++|++|++.++++. +.++++++++.++..
T Consensus 146 ~~~~-----------~~~~--~~~~~r~~ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~ 212 (446)
T 4ene_A 146 MVLD-----------IFRL--KGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTI 212 (446)
T ss_dssp HHHH-----------HTTC--CSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHH-----------HCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 9998-----------8199--97999999999899999999818962578998999874166567799999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99988988507864444787216886147888878578999999999999999999999999999975311028702578
Q 006517 164 VLRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVL 243 (642)
Q Consensus 164 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~lGi~~g~~g~~F~~~~~~~~~~~~~~~~~~~~~~~~ 243 (642)
+++.+ +|+++ .|+++. ...+++.++++++++|++||++|.+|++.+.+.+++++++....++++++
T Consensus 213 v~~~~-----------~g~~~--~~~~~~-~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~ 278 (446)
T 4ene_A 213 MYRIF-----------NHEVA--LIDVGK-LSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVL 278 (446)
T ss_dssp HHHHT-----------TTTCC--SCCCCC-CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHH-----------CCCCC--EEECCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99997-----------48886--032577-77667899999999999999999999999999999998613341269999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCH
Q ss_conf 88999998543102543333556899887678788878889743455799861024553106844788854306998620
Q 006517 244 LVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEF 323 (642)
Q Consensus 244 ~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~ 323 (642)
.+.++++++++++++.|+. .| ++|+. +++.+++ ++
T Consensus 279 ~~~l~g~~~g~l~~~~p~~-----------------~G------------~G~~~------------i~~~~~~----~~ 313 (446)
T 4ene_A 279 MGGAIGGLCGLLGFVAPAT-----------------SG------------GGFNL------------IPIATAG----NF 313 (446)
T ss_dssp HHHHHHHHHHHHHHHCGGG-----------------SS------------CCSTH------------HHHHHTT----CS
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------CC------------CCHHH------------HHHHHCC----CC
T ss_conf 9999999999999983765-----------------28------------93999------------9998748----84
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 38899999999999998772587884320269899777766989853003---698726999997664210203313667
Q 006517 324 HLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL---SDLDTGLFALLGAASFLGGTMRMTVSL 400 (642)
Q Consensus 324 ~~~~l~~~~v~K~~~t~~t~g~G~~GG~~~P~l~iGa~~G~~~~~~~~~~---~~~~~~~~a~iG~aa~~a~~~~~pls~ 400 (642)
.+..++.+++.|+++|++|+|+|+|||.|+|++++||++|+++|.+.+.. ...+++.|+++||+|+++|++|+|+|+
T Consensus 314 ~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~~~~aPlt~ 393 (446)
T 4ene_A 314 SMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTG 393 (446)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 19999999999999999998169986325888999999999999999996776556789999999999999997408999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHC
Q ss_conf 5589765288510789999999999999630-821789999961
Q 006517 401 CVILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVKLK 443 (642)
Q Consensus 401 ~~i~~E~tg~~~~l~p~~ia~~~s~~vs~~l-~~~iy~~~l~~~ 443 (642)
+++++||||++++++|+|+++++|+.+++.+ ++++|+.++++.
T Consensus 394 ~vl~~Eltg~~~~~lpl~ia~~ia~~v~~~~~~~~iY~~~l~r~ 437 (446)
T 4ene_A 394 IILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILART 437 (446)
T ss_dssp HHHHHHHHCCGGGHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999997886689999999999999999848998699999999
No 4
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=1.00 E-value=1 Score=501.16 Aligned_cols=360 Identities=25% Similarity=0.427 Sum_probs=303.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999999999997705766789999999881978788775006789899889998507867883259999999988
Q 006517 7 TSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIAN 86 (642)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~p~~~GsGip~v~~~l~~~~~~~~~~~~~~~~k~~~~~~~i~~G~s~G~Egp~v~~g~~i~~ 86 (642)
+..+..++++++++++++.|+++||||||+++++++. ++..++|+.+.|++++++++++|+|+|||||++|+|+++++
T Consensus 79 ~~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~~l~g~--~~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~ 156 (466)
T 3nd0_A 79 ALISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGK--LPLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQ 156 (466)
T ss_dssp HHHHHHHHHHHHHHHTTTCGGGSBCSHHHHHHHTTSS--SCCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999999999999977776789989999998188--88752899999999999999558777776569999999999
Q ss_pred HHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q ss_conf 7402585220002424201479344568998734322232103873115688999865321--24689999999999999
Q 006517 87 LLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWR--SALLWRTFFTTAVVAVV 164 (642)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~--~~~~~~~~~~~~ia~~~ 164 (642)
+++| ++|. +++++|.+++||+|||++|+||||++|++|++|++.++++ ...++++++++.++..+
T Consensus 157 ~l~~-----------~~~~--~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v 223 (466)
T 3nd0_A 157 MTGG-----------WFKA--TQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATII 223 (466)
T ss_dssp HHHH-----------HTTC--CHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHH-----------HCCC--CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9998-----------8099--86689999999999999999488268789998753143508999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99889885078644447872168861478888785789999999999999999999999999999753110287025788
Q 006517 165 LRGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLL 244 (642)
Q Consensus 165 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~lGi~~g~~g~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (642)
++.+ +|+++ .|+++. ...+++.++++++++|++||++|.+|++.+.+.+++++++.+ +.++..
T Consensus 224 ~~~~-----------~g~~~--~f~~~~-~~~~~~~~l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~~---~~~~~~ 286 (466)
T 3nd0_A 224 LRMI-----------RGQSA--IISLTE-FKRVPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLPP---LATKWK 286 (466)
T ss_dssp HHHH-----------TCSSC--SSCCTT-CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH---HHHHHH
T ss_pred HHHH-----------CCCCC--CEECCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHH
T ss_conf 9997-----------58887--130577-787899999999999999999999999999999999987054---647999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHH
Q ss_conf 89999985431025433335568998876787888788897434557998610245531068447888543069986203
Q 006517 245 VAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFH 324 (642)
Q Consensus 245 ~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 324 (642)
+.++++++++++++.|+. .| ++|+ .+++++++ ++.
T Consensus 287 ~~l~g~~~g~l~~~~p~~-----------------~G------------~G~~------------~i~~~~~~----~~~ 321 (466)
T 3nd0_A 287 GFLLGSIIGILSLFPLPL-----------------TD------------GGDN------------AVLWAFNS----QSH 321 (466)
T ss_dssp HHHHHHHHHHHTTSSSSC-----------------SS------------SSHH------------HHHHHTTS----CCC
T ss_pred HHHHHHHHHHHHHHHHHH-----------------CC------------CCHH------------HHHHHHCC----CCC
T ss_conf 999999999999997877-----------------39------------9399------------99999848----951
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-C--CCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 8899999999999998772587884320269899777766989853003-6--987269999976642102033136675
Q 006517 325 LSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLLGAL-S--DLDTGLFALLGAASFLGGTMRMTVSLC 401 (642)
Q Consensus 325 ~~~l~~~~v~K~~~t~~t~g~G~~GG~~~P~l~iGa~~G~~~~~~~~~~-~--~~~~~~~a~iG~aa~~a~~~~~pls~~ 401 (642)
+..++.+++.|+++|++|+|+|+|||.|+|++++||++|++++.+.+.. + ..+++.|+++||+|++++++|+|+|++
T Consensus 322 ~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~v~~aPlt~i 401 (466)
T 3nd0_A 322 FSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAATVRAPLTAI 401 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTTCSSTHHHHHHTTSHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999982799875405789999999999999999867765567899999999999999984499999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHC
Q ss_conf 589765288510789999999999999630-821789999961
Q 006517 402 VILLELTNNLLMLPLVMLVLLISKTVADSF-NQGVYDQIVKLK 443 (642)
Q Consensus 402 ~i~~E~tg~~~~l~p~~ia~~~s~~vs~~l-~~~iy~~~l~~~ 443 (642)
++++||||++++++|+|+++++|+.+++.+ ++++|+.++++.
T Consensus 402 vlv~Eltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r~ 444 (466)
T 3nd0_A 402 LLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLERT 444 (466)
T ss_dssp HHHHHTTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999997876789999999999999999818998499999998
No 5
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=1.00 E-value=1 Score=148.53 Aligned_cols=193 Identities=17% Similarity=0.070 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCH-HHHHHHHHHHHHHHHH-CCCCCCCCCCCCCC
Q ss_conf 7857899999999999999999999999999997531102----8702-5788899999854310-25433335568998
Q 006517 197 YSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINER----GPIF-KVLLVAAVSLLTSCCS-YGLPWLSHCIPCPS 270 (642)
Q Consensus 197 ~~~~~l~~~~~lGi~~g~~g~~F~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~i~-~~~p~~~~~~~~~~ 270 (642)
+....+...+++|++.|+++.+|...+.+..+++..+... .++. .++.+.+.+++++.+. ++.|+..
T Consensus 6 ~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~------- 78 (632)
T 3org_A 6 YLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAE------- 78 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------
T ss_conf 8999999999999999999999999999999999999997425478999999999999999999996187667-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 87678788878889743455799861024553106844788854306998620388999999999999987725878843
Q 006517 271 YLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSG 350 (642)
Q Consensus 271 ~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~v~K~~~t~~t~g~G~~GG 350 (642)
| +|. +++...+ ++....++ ...+ .-.++.|++.+.+++++|.+.|
T Consensus 79 ----------G-sGI-----------p~v~~~l-~g~~~~~~--------~~~~----~~~~~~K~~~~~l~igsG~s~G 123 (632)
T 3org_A 79 ----------G-SGL-----------PQMKSIL-SGFYDKMR--------SALE----LRVLFAKALGLICAIGGGLPVG 123 (632)
T ss_dssp ----------B-CSH-----------HHHHHHT-TTTHHHHG--------GGGS----HHHHHHHHHHHHHHHHTTCSCB
T ss_pred ----------C-CCH-----------HHHHHHH-HCCCCCCC--------CCCC----HHHHHHHHHHHHHHHHCCCCCC
T ss_conf ----------8-998-----------9999999-27421245--------5352----9999999999999995387766
Q ss_pred CCHHHHHHHHHHHHHHHH--HHHCC--CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CCC--CHHHHHHHHHH
Q ss_conf 202698997777669898--53003--698726999997664210203313667558976528-851--07899999999
Q 006517 351 LFIPVILAGASYGRLVGN--LLGAL--SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTN-NLL--MLPLVMLVLLI 423 (642)
Q Consensus 351 ~~~P~l~iGa~~G~~~~~--~~~~~--~~~~~~~~a~iG~aa~~a~~~~~pls~~~i~~E~tg-~~~--~l~p~~ia~~~ 423 (642)
++.|+.++||++|..++. +++.. ...+...+..+|+||.+|++.++|+++++|.+|... .++ .+.|.++++++
T Consensus 124 rEGP~vqiGa~ig~~~~~~~~f~~~~~~~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~ 203 (632)
T 3org_A 124 WEGPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALS 203 (632)
T ss_dssp SHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65429999999999874201211335899999999998988878998388408699999998888768778789999999
Q ss_pred HHHHHHHC
Q ss_conf 99999630
Q 006517 424 SKTVADSF 431 (642)
Q Consensus 424 s~~vs~~l 431 (642)
+..+++.+
T Consensus 204 a~~v~~~~ 211 (632)
T 3org_A 204 GAIVYELL 211 (632)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHHH
T ss_conf 99999996
No 6
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=1.00 E-value=1 Score=148.45 Aligned_cols=151 Identities=16% Similarity=0.197 Sum_probs=114.5
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 23544201135688379617554889999972079991237308999999927998867999999832633446666773
Q 006517 455 YMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGS 534 (642)
Q Consensus 455 ~l~~l~V~dim~~~~~~v~~~~ti~e~~~~l~~~~~~~~PVvd~~~~~~~~~lvGiIs~~dL~~~l~~~~~~~~~~~~~~ 534 (642)
.+.+++|+|+|++++.++++++++.++.+.|.+++++++||+|++ ++++|++|.+|+.+..........
T Consensus 14 ~l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----g~lvGiit~~Dll~~~~~~~~~~~------ 82 (170)
T 4esy_A 14 AIRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-----GHLVGIITESDFLRGSIPFWIYEA------ 82 (170)
T ss_dssp HHHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-----SCEEEEEEGGGGGGGTCCTTHHHH------
T ss_pred HHCCCCHHHHCCCCCCEECCCCCHHHHHHHHHHCCCEEEEEECCC-----CCEEEEEEHHHHHHHHHHCCCCCH------
T ss_conf 875979799567998378891939999999998598199998499-----338888879999987751244311------
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 10000001000013899986544555664433014255344346970331799999999999982995899920899999
Q 006517 535 DIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRP 614 (642)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~lm~~~~~~~lpVvd~~~~~g 614 (642)
.+.... ....... ..........+++++|+++++++++++++.++.++|.+++.+++||+| +|
T Consensus 83 --------~~~~~~----~~~~~~~-~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd----~g 145 (170)
T 4esy_A 83 --------SEILSR----AIPAPEV-EHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ----DG 145 (170)
T ss_dssp --------HHHHTT----TSCHHHH-HHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE----TT
T ss_pred --------HHHHHH----CCCHHHH-HHHHCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE----CC
T ss_conf --------344420----2314667-765313345651251256864678400499999999983995899999----99
Q ss_pred CEEEEEEHHHCCHHHHHCC
Q ss_conf 8689983000305576330
Q 006517 615 PIVGILTRHDFMPEHVLGL 633 (642)
Q Consensus 615 ~liGiIT~~Dil~~~~~~~ 633 (642)
+++|+||++|+++.+.++.
T Consensus 146 ~lvGivt~~Dil~~l~~~~ 164 (170)
T 4esy_A 146 VPVGIVTRRDLLKLLLLEE 164 (170)
T ss_dssp EEEEEEEHHHHTTTSCCC-
T ss_pred EEEEEEEHHHHHHHHHHCC
T ss_conf 9999998999999997353
No 7
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=1.00 E-value=1 Score=144.01 Aligned_cols=169 Identities=21% Similarity=0.321 Sum_probs=116.0
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCC-
Q ss_conf 2354420113568837961755488999997207999123730899999992799886799999983263344666677-
Q 006517 455 YMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTG- 533 (642)
Q Consensus 455 ~l~~l~V~dim~~~~~~v~~~~ti~e~~~~l~~~~~~~~PVvd~~~~~~~~~lvGiIs~~dL~~~l~~~~~~~~~~~~~- 533 (642)
...+++|+|+|+++++++.+++++.++.+.|.+++++++||||++ ++++++|+|+++||.+++........+....
T Consensus 9 ~~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~---~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~ 85 (250)
T 2d4z_A 9 NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP---DTNTLLGSIDRTEVEGLLQRRISAYRRQPAAA 85 (250)
T ss_dssp CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCT---TTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCC
T ss_pred CCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECC---CCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 668989088567898588998989999999984498878899669---88769999899999999987441112233433
Q ss_pred --------CCC---------CCCCCHHHHC-----------------C------------------------CCCCCCCC
Q ss_conf --------310---------0000010000-----------------1------------------------38999865
Q 006517 534 --------SDI---------MRRFKAHDFA-----------------K------------------------AGSGKGVK 555 (642)
Q Consensus 534 --------~~~---------~~~~~~~~~~-----------------~------------------------~~~~~~~~ 555 (642)
... ...+...+.. + ....+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (250)
T 2d4z_A 86 AEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVAS 165 (250)
T ss_dssp CCBCCC--------------------------------------------------------------------------
T ss_pred HCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 10123465544456445577540332023222343335765567755577655566654332222222233333234675
Q ss_pred CCCCCCCH--------HHHHCCCCCCC-CCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEHHHCC
Q ss_conf 44555664--------43301425534-4346970331799999999999982995899920899999868998300030
Q 006517 556 LEDLDIKE--------EEMEMFVDLHP-ITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626 (642)
Q Consensus 556 ~~~~~~~~--------~~~~~~~~v~~-im~~~~~~v~~~~~l~~a~~lm~~~~~~~lpVvd~~~~~g~liGiIT~~Dil 626 (642)
..+..++. +..+..+++++ +|+++|+++.+++++++++++|.+.+++++||++ +|+++||||++|++
T Consensus 166 ~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~----~GrLVGIVTrkDl~ 241 (250)
T 2d4z_A 166 RFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS----MGKLVGVVALAEIQ 241 (250)
T ss_dssp -CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TTEEEEEEEHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCEEEEEEE----CCEEEEEEEHHHHH
T ss_conf 21244583356667787517664146641108981878999599999999983990899988----99799999999999
Q ss_pred HHHH
Q ss_conf 5576
Q 006517 627 PEHV 630 (642)
Q Consensus 627 ~~~~ 630 (642)
++..
T Consensus 242 kai~ 245 (250)
T 2d4z_A 242 AAIE 245 (250)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 8
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=1.00 E-value=1 Score=143.55 Aligned_cols=161 Identities=14% Similarity=0.138 Sum_probs=127.7
Q ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC-CCHHHHHHHHHHCCCCCEEEEE-CCCCCCC
Q ss_conf 9963082178999996199854445344235442011356883796175-5488999997207999123730-8999999
Q 006517 427 VADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGV-EKVGNIMHALRLTRHNGFPVID-EPPLTPA 504 (642)
Q Consensus 427 vs~~l~~~iy~~~l~~~g~~~~~~~~~~~l~~l~V~dim~~~~~~v~~~-~ti~e~~~~l~~~~~~~~PVvd-~~~~~~~ 504 (642)
..+++...+++.++..+++.......+..+.+.+|+|+|++++.+++++ +++.++++.|.+++++.+||+| ++
T Consensus 352 g~ryls~~~~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~----- 426 (527)
T 3pc3_A 352 IRNYMTKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD----- 426 (527)
T ss_dssp GGGGTTTTTSHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT-----
T ss_pred CHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCC-----
T ss_conf 166676540588887558865544345654688699937689869808978199999999985998677997899-----
Q ss_pred CEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEC
Q ss_conf 92799886799999983263344666677310000001000013899986544555664433014255344346970331
Q 006517 505 PELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVV 584 (642)
Q Consensus 505 ~~lvGiIs~~dL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~ 584 (642)
++++|+|+.+|+.+.+.... .....+++++|++++++++
T Consensus 427 g~lvGiVt~~Dll~~l~~~~-----------------------------------------~~~~~~V~~im~~~~~~v~ 465 (527)
T 3pc3_A 427 GSVLGVVGQETLITQIVSMN-----------------------------------------RQQSDPAIKALNKRVIRLN 465 (527)
T ss_dssp CCEEEEEEHHHHHHHHHHHC-----------------------------------------CCTTSBGGGGEETTCCEEE
T ss_pred CEEEEEEEHHHHHHHHHHCC-----------------------------------------CCCCCCHHHHHCCCCEEEC
T ss_conf 97999988999999997056-----------------------------------------7688808999518981889
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECC-CCCCCEEEEEEHHHCCHHHHHCCCC
Q ss_conf 79999999999998299589992089-9999868998300030557633086
Q 006517 585 ETMSLAKAAVLFRQLALRHLCVVPKT-PGRPPIVGILTRHDFMPEHVLGLYP 635 (642)
Q Consensus 585 ~~~~l~~a~~lm~~~~~~~lpVvd~~-~~~g~liGiIT~~Dil~~~~~~~~~ 635 (642)
+++++.++.++|.+++. +||+|++ .++++++|+||++|+++.+.++...
T Consensus 466 ~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~~~ 515 (527)
T 3pc3_A 466 ESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGKQK 515 (527)
T ss_dssp TTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCCCC
T ss_pred CCCCHHHHHHHHHHCCE--EEEEECCCCCCCEEEEEEEHHHHHHHHHHCCCC
T ss_conf 98919999999825888--999917866688289998789999999844523
No 9
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=1.00 E-value=1 Score=131.88 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=112.6
Q ss_pred CCCCCCCCCCCC--CCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCC
Q ss_conf 235442011356--883796175548899999720799912373089999999279988679999998326334466667
Q 006517 455 YMKNLVASDVVS--GPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 532 (642)
Q Consensus 455 ~l~~l~V~dim~--~~~~~v~~~~ti~e~~~~l~~~~~~~~PVvd~~~~~~~~~lvGiIs~~dL~~~l~~~~~~~~~~~~ 532 (642)
.+...+|+|+|+ +++.++++++++.++.+.|.+++++.+||+|++ .++++|+++.+|+.+......
T Consensus 38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~----~~~lvGivt~~dl~~~~~~~~-------- 105 (172)
T 3lhh_A 38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNN----VDDMVGIISAKQLLSESIAGE-------- 105 (172)
T ss_dssp -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSS----TTSEEEEEEHHHHHHHHHTTC--------
T ss_pred CCCCCCHHHHCCCHHHEEEECCCCCHHHHHHHHHHCCCCEEEEEECC----CCEEEEEEEHHHHHHHHHHCC--------
T ss_conf 40887998938568895897189989999999996799879999589----980999999999998876247--------
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 73100000010000138999865445556644330142553443469703317999999999999829958999208999
Q 006517 533 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPG 612 (642)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~lm~~~~~~~lpVvd~~~~ 612 (642)
..+++++| +++.++++++++.++.++|.+++.+.+||+|+
T Consensus 106 ------------------------------------~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--- 145 (172)
T 3lhh_A 106 ------------------------------------RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE--- 145 (172)
T ss_dssp ------------------------------------CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT---
T ss_pred ------------------------------------CCCHHHHH-CCCEEECCCCCHHHHHHHHHHCCCEEEEEEEC---
T ss_conf ------------------------------------65599985-48937589798999999998729849999908---
Q ss_pred CCCEEEEEEHHHCCHHHHHCCCCC
Q ss_conf 998689983000305576330865
Q 006517 613 RPPIVGILTRHDFMPEHVLGLYPH 636 (642)
Q Consensus 613 ~g~liGiIT~~Dil~~~~~~~~~~ 636 (642)
+|+++|+||++|+++....+...+
T Consensus 146 ~g~lvGiit~~Dil~~l~~~~~de 169 (172)
T 3lhh_A 146 YGDLKGLVTLQDMMDALTGEFFQE 169 (172)
T ss_dssp TSCEEEEEEHHHHHHHHHTTCC--
T ss_pred CCCEEEEEEHHHHHHHHHCCCCCC
T ss_conf 999899964899999983977566
No 10
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=1.00 E-value=1 Score=131.45 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=110.7
Q ss_pred CCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHC---CCCCEEEEECCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCC
Q ss_conf 354420113568837961755488999997207---99912373089999999279988679999998326334466667
Q 006517 456 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLT---RHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 532 (642)
Q Consensus 456 l~~l~V~dim~~~~~~v~~~~ti~e~~~~l~~~---~~~~~PVvd~~~~~~~~~lvGiIs~~dL~~~l~~~~~~~~~~~~ 532 (642)
....+|+++|++++.++++++++.++++.|++. +.+.+||+|++ ++++|+++.+|+... .
T Consensus 51 ~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-----~~lvGivt~~dll~~---~--------- 113 (205)
T 3kxr_A 51 YSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-----DKYLGTVRRYDIFKH---E--------- 113 (205)
T ss_dssp SCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-----CBEEEEEEHHHHTTS---C---------
T ss_pred CCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCC-----CEEEEEEEHHHHHHC---C---------
T ss_conf 99102786311763898998939999999985185670189998699-----949999889999707---9---------
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 73100000010000138999865445556644330142553443469703317999999999999829958999208999
Q 006517 533 GSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPG 612 (642)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~lm~~~~~~~lpVvd~~~~ 612 (642)
...+++++|+++++++++++++.++.++|.+++.+.+||+|+
T Consensus 114 -----------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~--- 155 (205)
T 3kxr_A 114 -----------------------------------PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDD--- 155 (205)
T ss_dssp -----------------------------------TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECT---
T ss_pred -----------------------------------CCCHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECC---
T ss_conf -----------------------------------731089981689858879998999999999659988889868---
Q ss_pred CCCEEEEEEHHHCCHHHHHCCCCCCC
Q ss_conf 99868998300030557633086521
Q 006517 613 RPPIVGILTRHDFMPEHVLGLYPHIV 638 (642)
Q Consensus 613 ~g~liGiIT~~Dil~~~~~~~~~~~~ 638 (642)
+|+++|+||+.|+++...++..+++.
T Consensus 156 ~g~lvGiIT~~Dil~~i~~e~~ed~~ 181 (205)
T 3kxr_A 156 AGELIGRVTLRAATALVREHYEAQLM 181 (205)
T ss_dssp TSBEEEEEEHHHHHHHHHHHHC----
T ss_pred CCEEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 99699998899999999998789999
Done!