RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 006517
(642 letters)
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 463 bits (1194), Expect = e-156
Identities = 140/643 (21%), Positives = 247/643 (38%), Gaps = 83/643 (12%)
Query: 1 MGFVANTSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGI--DAHSILAPSTLFVKI 58
G++ + L +L+ CA ++ A GSG+P++K+ L+G S L LF K
Sbjct: 50 AGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKA 109
Query: 59 FGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITC 118
G I + G VG EGP VH IA+ + G + + R +
Sbjct: 110 LGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLG--------VFKELCTDRALRLQTLAA 161
Query: 119 GAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCG 178
A G+A +F AP+GGVL+++E AS++ W+ + A+V
Sbjct: 162 ACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELL---------- 211
Query: 179 LFGQGGLIMFDV-NSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERG 237
+ + F+ N + S L LG + G+ G+ + V + +
Sbjct: 212 -YTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELR--MRHYP 268
Query: 238 PIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYN 297
+ LV V+L S Y P N
Sbjct: 269 GTNRYFLVGVVALFASALQYPFRLF--------------------------ALDPRATIN 302
Query: 298 DLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVIL 357
DL D F + L++ + + L ++ G+ +P+G+F+P L
Sbjct: 303 DLFKAVPLYQTD------------HFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFL 350
Query: 358 AGASYGRLVGNLLGAL--SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLP 415
GA +GRL G L+ + + + G +A++GAA+F G R +S VI+ E+T + L
Sbjct: 351 IGAGFGRLYGELMRVVFGNAIVPGSYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLV 409
Query: 416 LVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSG--PLITFS 473
V++ +L++ V ++FN+ +Y+ +V +K LPY+ + A +++
Sbjct: 410 PVLISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLF 469
Query: 474 GVEKVGNIMHAL-RLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMT 532
+ +I L + FPVID L G + R ++ L+ + +
Sbjct: 470 PDSEPQHIKGILEKFPNRLVFPVIDAN-----GYLLGAISRKEIVDRLQHVLEDVPEPIA 524
Query: 533 GSDIMRRFKAHDFAKAGSGKGVKLEDLD------IKEEEMEMFVDLHPITNTSPYTVVET 586
G + A D ++ G + + +E L + SP V
Sbjct: 525 GHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSY 584
Query: 587 MSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEH 629
+ + LF L + V + G+ +VGI+ R D +
Sbjct: 585 SLVRQLHFLFVMLMPSMIYVTER--GK--LVGIVEREDVAYGY 623
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 190 bits (484), Expect = 6e-54
Identities = 97/448 (21%), Positives = 160/448 (35%), Gaps = 75/448 (16%)
Query: 11 LGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFV 70
LA+ L AP A GSGIPE++ L + L VK FG + + G V
Sbjct: 87 AVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMV 144
Query: 71 VGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAFRA 130
+G+EGP V G I ++ R K D R L+ GAAAG+A AF A
Sbjct: 145 LGREGPTVQIGGNIGRMVL-----------DIFR-LKGDEARHTLLATGAAAGLAAAFNA 192
Query: 131 PVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMFDV 190
P+ G+LF +EE +R L+ + V++ + + LI
Sbjct: 193 PLAGILFIIEEMRPQFRYTLIS---IKAVFIGVIMSTIM------YRIFNHEVALIDVGK 243
Query: 191 NSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAVSL 250
S L + LG+I GIFG +N V + ++ VL+ A+
Sbjct: 244 LSD---APLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGG 300
Query: 251 LTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDA 310
L + P +
Sbjct: 301 LCGLLGFVAPAT-----------------------------------------SGGGFNL 319
Query: 311 IRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNLL 370
I + F + L+ FVA ++ + P G+F P++ G G G +
Sbjct: 320 IPIATAG----NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVA 375
Query: 371 GAL---SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTV 427
L L+ G FA+ G + L ++R ++ +++LE+T+N ++ +++ L + +
Sbjct: 376 VELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLL 435
Query: 428 ADSFNQG-VYDQIVKLKGLPYLEAHAEP 454
A +Y I+
Sbjct: 436 AQFTGGKPLYSAILARTLAKQEAEQLAR 463
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 182 bits (465), Expect = 3e-51
Identities = 91/427 (21%), Positives = 165/427 (38%), Gaps = 78/427 (18%)
Query: 9 INLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAG 68
I+ G+ L+ L AP +GSGIP+++ +L G ++ L +K+ G + AG
Sbjct: 81 ISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEG--KLPLVWQRVLPIKLVGGFLSLGAG 138
Query: 69 FVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAF 128
+ G EGP + G I + G W + ++R LI GA AG+A AF
Sbjct: 139 MLAGFEGPTIQMGGSIGQMTG-----------GWFK--ATQENQRILIAVGAGAGLATAF 185
Query: 129 RAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMF 188
AP+ GV EE +RS L + + + V+ I + GQ +I
Sbjct: 186 NAPLAGVALIGEEMHPRFRSQTL---AYHSLLFGCVMATII------LRMIRGQSAIISL 236
Query: 189 DVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAV 248
L I LG++ G+ G +N + KVL + + +K L+
Sbjct: 237 TEFKR---VPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLPPLATKWKGFLLG-- 291
Query: 249 SLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTND 308
+ S L + D
Sbjct: 292 -SIIGILSLFPLPL-----------------------------------------TDGGD 309
Query: 309 DAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGN 368
+A+ F+S + H STL++ F + L +I YG G+F P++ + +
Sbjct: 310 NAVLWAFNS----QSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMAR 365
Query: 369 LLGAL---SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISK 425
L + + A+ G + + T+R ++ ++ +E+T+N ++ +++ L++
Sbjct: 366 HFHLLFPSQIPEPAVMAIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVAS 425
Query: 426 TVADSFN 432
VA++
Sbjct: 426 VVAEALG 432
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 114 bits (286), Expect = 2e-29
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 30/180 (16%)
Query: 453 EPYMKNLVASDVVS----GPLITFSGVE--KVGNIMHALRLTRHNGFPVIDEPPLTPAPE 506
E + +A DV+ PL+T + V ++ + T ++GFPV+ +
Sbjct: 5 EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE---SQR 61
Query: 507 LCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEM 566
L G VLR L++ ++ + + ++ S I E
Sbjct: 62 LVGFVLRRDLIISIENARKKQDGVVSTSIIYFT-----------------EHSPPLPPYT 104
Query: 567 EMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+ L I + SP+TV + + +FR+L LR V GR ++GI+T+ D +
Sbjct: 105 PPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN--GR--LLGIITKKDVL 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 9e-11
Identities = 107/570 (18%), Positives = 162/570 (28%), Gaps = 187/570 (32%)
Query: 46 HSILAPSTLFV------KIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLT 99
H +L P+ F + F I + P A L+G
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP-----TTPAELVG---------- 62
Query: 100 WRWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEE-----------AASWWRS 148
++L Y ++ G F + L E AA
Sbjct: 63 -KFLGY----------VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK---- 107
Query: 149 ALLWRTFFTTAVVAVVLRGFIE--------FCRSGRCGLFGQGGLIMFDVNSAKNSYSSA 200
LL T +++ +I F + LF + +A
Sbjct: 108 -LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF----------RAVGE--GNA 154
Query: 201 DLLAVIFLGVIGGIFGSFYNYLVDKVLR----TYSIINERGPIFKVLLVAAVSLLTSC-- 254
L+A IF GG G+ +Y + LR TY + L+ + L+
Sbjct: 155 QLVA-IF----GG-QGNTDDYFEE--LRDLYQTYH------VLVGDLIKFSAETLSELIR 200
Query: 255 --------CSYGLP---WLSHCIPCPS--YLEADRCPTVGRSGNYKNFQCP------AGH 295
+ GL WL + P YL P CP H
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYL--LSIP----------ISCPLIGVIQLAH 248
Query: 296 YNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPV 355
Y A L L +R+ T H G++T AV
Sbjct: 249 YVVTAKL-LGFTPGELRSYLKGATG---HSQ------------GLVT---AV-------A 282
Query: 356 ILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNL-LML 414
I S+ ++ A+ T LF +G ++ ++ L NN +
Sbjct: 283 IAETDSWESFFVSVRKAI----TVLF-FIGVRC-YEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 415 PLVMLVLLISKTVADSFNQGVYDQIVKL-KGLPYLEAHAEPYMKNLVASD--VVSGP--- 468
P ML +++ + V D + K LP E + N + VVSGP
Sbjct: 337 P--MLS------ISNLTQEQVQDYVNKTNSHLP-AGKQVEISLVN--GAKNLVVSGPPQS 385
Query: 469 LITF-SGVEKV--------GNIMHALR-LTRHNGFPVIDEP---P-LTPAPELCGLVLRS 514
L + K I + R L N F + P L PA +L L
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 515 HLLVLLKGK--KFTKQKTMTGSDIMRRFKA 542
+ V K + T GSD +R
Sbjct: 446 N-NVSFNAKDIQIPVYDTFDGSD-LRVLSG 473
Score = 54.7 bits (131), Expect = 1e-07
Identities = 73/479 (15%), Positives = 128/479 (26%), Gaps = 164/479 (34%)
Query: 1 MGFVAN----TSINLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILA------ 50
+G+V++ + + +L L + E YL G D H++ A
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEF-----------E-NCYLEGNDIHALAAKLLQEN 112
Query: 51 PSTL-----FVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLL---------------GQ 90
+TL +K + + A + + A L GQ
Sbjct: 113 DTTLVKTKELIKNY-----ITARIMAKRPFDKKSNSA----LFRAVGEGNAQLVAIFGGQ 163
Query: 91 GGSKKYHLTWRWLR-----YFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASW 145
G + Y + LR Y L+ G L L
Sbjct: 164 GNTDDY---FEELRDLYQTY-------HVLV---------GDLIKFSAETLSELIRTTLD 204
Query: 146 WRSA-------LLW---------RTFFTTAVVAVVLRG------FIEFCRSGRCGLFGQG 183
L W + + + ++ L G ++ +
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK--------LL 256
Query: 184 GLIMFDVNSAKNSYS--SADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERG---- 237
G ++ S + S L+ + + + SF+ V K + I R
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAE-TDSWESFFV-SVRKAITVLFFIGVRCYEAY 314
Query: 238 PIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCP--------------------SYLEADRC 277
P + S+L +P P S+L A +
Sbjct: 315 PNTSL----PPSILEDSLENN-----EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 278 PTVGRSGNYKNFQCPAGHYNDLASLFLN-------TNDDAIRNLFSSG----------TS 320
+ KN +G L L L + D R FS +
Sbjct: 366 VEISLVNGAKNLVV-SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 321 KEFHLSTLLVFFVAIYCLGIITYGIAV-PSGLFIPV--ILAGASYGRLVGNLLGALSDL 376
FH S LLV + ++ ++ + IPV G+ L G++ + D
Sbjct: 425 SPFH-SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Score = 45.0 bits (106), Expect = 8e-05
Identities = 75/413 (18%), Positives = 128/413 (30%), Gaps = 143/413 (34%)
Query: 292 PAGHYNDLASL--------FLNTND--DAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGII 341
G ++ + +L +L ND L + L+ ++ +
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 342 TYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFALLGAASFLG-GTMRMTVSL 400
+ S LF A+ + + L A+ G G G
Sbjct: 136 PFDKKSNSALF------------------RAVGEGNAQLVAIFG-----GQGNTDDYFE- 171
Query: 401 CVILLEL-----TNNLLMLPLV-----MLVLLISKTVADS--FNQGVYDQIVK-LKGLPY 447
EL T ++L+ L+ L LI T+ F QG+ I++ L+ P
Sbjct: 172 -----ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLEN-PS 223
Query: 448 LEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPA--- 504
+ Y+ S +S PLI GV ++ + + +L G TP
Sbjct: 224 -NTPDKDYL----LSIPISCPLI---GVIQLAHYVVTAKLL---G--------FTPGELR 264
Query: 505 PELCGLVLRSHLLVL-------LKGKKFTKQ--KTMT-----GSDIMRRFKAH------- 543
L G S LV + F K +T G R ++A+
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV---RCYEAYPNTSLPP 321
Query: 544 ----DFAKAGSGK-----GVKLEDLDIKEEEMEMFVDLHPITNTS--PYTVVETMSL--- 589
D + G + ++ +E+++ +V+ TN+ VE +SL
Sbjct: 322 SILEDSLENNEGVPSPMLSIS----NLTQEQVQDYVNK---TNSHLPAGKQVE-ISLVNG 373
Query: 590 AKAAV-------LFR-QLALRHLCVVP-----KTP--GRPPIVGILTRHDFMP 627
AK V L+ L LR + P R + F+P
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS----NRFLP 422
Score = 32.7 bits (74), Expect = 0.50
Identities = 56/344 (16%), Positives = 98/344 (28%), Gaps = 144/344 (41%)
Query: 339 GIITYGIAVPSGLFIPVILAGASYGRLVGNLLGALSDLDTGLFA---------LLGAASF 389
G + + + VP+ F AS +L L + G A L+ F
Sbjct: 14 GSLEHVLLVPTASFFI-----AS--QLQEQFNKILPEPTEGFAADDEPTTPAELV--GKF 64
Query: 390 LGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADSFNQGVYDQIVKLKGLPYLE 449
LG +S V S G +DQ++ L L E
Sbjct: 65 LG------------------------------YVSSLVEPS-KVGQFDQVLNL-CLTEFE 92
Query: 450 AHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCG 509
Y++ +D+ HAL ++ L E
Sbjct: 93 NC---YLEG---NDI------------------HALAAK----LLQENDTTLVKTKE--- 121
Query: 510 LVLRSHLL-VLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGS--------GKGVK---LE 557
++++++ ++ + F K+ + S + F+A G+ G+G E
Sbjct: 122 -LIKNYITARIMAKRPFDKK---SNSAL---FRA---VGEGNAQLVAIFGGQGNTDDYFE 171
Query: 558 DL------------DIKEEEMEMFVDL--HPITNTSPYT-VVETMS-------------L 589
+L D+ + E +L + +T + + L
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 590 AKAAVLF-----RQLALRHLCVVPK----TPG--RPPIVGILTR 622
+ QLA H V K TPG R + G
Sbjct: 232 LSIPISCPLIGVIQLA--HYVVTAKLLGFTPGELRSYLKGATGH 273
Score = 30.0 bits (67), Expect = 3.0
Identities = 42/288 (14%), Positives = 75/288 (26%), Gaps = 120/288 (41%)
Query: 34 PEVKAYLNGIDAHSILAPSTLFVKIFG-SIFGVAAGFVVGKEGP---MVHTGACIANLLG 89
+ N D H F +G SI + P +H G G
Sbjct: 1640 KAAQDVWNRADNH--------FKDTYGFSILDIV------INNPVNLTIHFG-------G 1678
Query: 90 QGGSKKYH----LTW--------RWLRYFKN-DRDRRDLITCGAAAGVAGAFRAPVGGV- 135
+ G + + + + + FK + FR+ G +
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT-----------FRSEKGLLS 1727
Query: 136 --------LFALEEAASWWR----------------------SAL------LWRTFFTTA 159
L +E+AA + +AL + +
Sbjct: 1728 ATQFTQPALTLMEKAA--FEDLKSKGLIPADATFAGHSLGEYAALASLADVM---SIESL 1782
Query: 160 VVAVVLRG-FIEFCRSGRCGLFGQGGLIMFDVN--SAKNSYSSADLLAVIFLGVIGGIFG 216
V V RG ++ G+ M +N S+S L V+ +G G
Sbjct: 1783 VEVVFYRGMTMQVAVPR--DELGRSNYGMIAINPGRVAASFSQEALQYVV--ERVGKRTG 1838
Query: 217 SFY---NYLVDKVLRTYSIINERGPIFKVLLVA----AVSLLTSCCSY 257
NY N + + A A+ +T+ ++
Sbjct: 1839 WLVEIVNY------------NVEN---QQYVAAGDLRALDTVTNVLNF 1871
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 58.9 bits (142), Expect = 2e-10
Identities = 24/179 (13%), Positives = 62/179 (34%), Gaps = 39/179 (21%)
Query: 446 PYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAP 505
P + ++ ++ + T + + ++ + T +P+++ T +
Sbjct: 1 PRILG-RNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES---TESQ 56
Query: 506 ELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEE 565
L G+V + +++ +A ++A ++
Sbjct: 57 ILVGIV--------------------QRAQLVQALQAEPPSRAPG-----------HQQC 85
Query: 566 MEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHD 624
++ + T T+ +L +A LF+ L L+ L V + GR VG ++ +
Sbjct: 86 LQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR--GR--AVGCVSWVE 140
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 55.0 bits (133), Expect = 3e-09
Identities = 22/174 (12%), Positives = 46/174 (26%), Gaps = 41/174 (23%)
Query: 456 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSH 515
MK ++S + I+ + + +L G++
Sbjct: 13 MKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR-----DNKLVGMI---- 63
Query: 516 LLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLE---DLDIKEEEMEMFVDL 572
+++ H F + ++ + E+ M
Sbjct: 64 ----------------PVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEI-M---- 102
Query: 573 HPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
P V L +A L ++ + VV + G IVG L + +
Sbjct: 103 -----LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEK-GE--IVGDLNSLEIL 148
Score = 35.3 bits (82), Expect = 0.022
Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 575 ITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLY 634
+ + P V E + + + + V + + VG++ + +
Sbjct: 21 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-NKL--VGMIPVMHLLKVSGFHFF 77
Query: 635 PHIVNRHK 642
I
Sbjct: 78 GFIPKEEL 85
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain,
CBS domains, ION CH regulatory subunit, transport
protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Length = 250
Score = 53.6 bits (127), Expect = 4e-08
Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 21/201 (10%)
Query: 441 KLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIM--------------HALR 486
KLK P+++ + + V G L + +
Sbjct: 43 KLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGRNGETGASFT 102
Query: 487 LTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFA 546
+ F ID+ ++ ++ S I ++ +
Sbjct: 103 GEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQ 162
Query: 547 KAGS-GKGVKLEDL-DIKEEEMEMFVDLHPIT-NTSPYTVVETMSLAKAAVLFRQLALRH 603
A + + LE++ ++ E + V+ + SP+ +VE SL K LF L L
Sbjct: 163 VASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDR 222
Query: 604 LCVVPKTPGRPPIVGILTRHD 624
V G+ +VG++ +
Sbjct: 223 AYVTSM--GK--LVGVVALAE 239
Score = 41.2 bits (95), Expect = 5e-04
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 446 PYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAP 505
P L + N+ D++ + + + G+++H LR T+ FP +D P
Sbjct: 1 PELS-WSSANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP---DTN 56
Query: 506 ELCGLVLRSHLLVLLK 521
L G + R+ + LL+
Sbjct: 57 TLLGSIDRTEVEGLLQ 72
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 52.0 bits (125), Expect = 6e-08
Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 34/165 (20%)
Query: 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTK 527
L V + + L + G PVID+ L G+V
Sbjct: 15 NLHVVKPSTSVDDALELLVEKKVTGLPVIDD-----NWTLVGVV---------------- 53
Query: 528 QKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEME-MFVDLHPIT-----NTSPY 581
+ D++ ++ + ++ E++ + + SP
Sbjct: 54 ----SDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPL 109
Query: 582 TVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
V ++ +L AA L + R L VV G+ ++GILTR + +
Sbjct: 110 VVRDSTNLEDAARLLLETKFRRLPVVDAD-GK--LIGILTRGNVV 151
Score = 37.4 bits (87), Expect = 0.005
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 576 TNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMP 627
+ + V + S+ A L + + L V+ VG+++ +D +
Sbjct: 12 PRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-WTL--VGVVSDYDLLA 60
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 47.0 bits (112), Expect = 2e-06
Identities = 26/182 (14%), Positives = 47/182 (25%), Gaps = 58/182 (31%)
Query: 447 YLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPE 506
+L E ++ A ++ + L + PV+ + +
Sbjct: 12 FLLGQEETFLTP--AKNL-----AVLIDTHNADHATLLLSQMTYTRVPVVTD-----EKQ 59
Query: 507 LCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEM 566
G + DIM HD ++ + D DI
Sbjct: 60 FVGTI--------------------GLRDIMAYQMEHDLSQE------IMADTDIVH--- 90
Query: 567 EMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRH--LCVVPKTPGRPPIVGILTRHD 624
+T T V ++ + + L VV G GI+TR
Sbjct: 91 --------MTKTDVAVVSPDFTITEVL----HKLVDESFLPVVDAE-GI--FQGIITRKS 135
Query: 625 FM 626
+
Sbjct: 136 IL 137
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 45.9 bits (109), Expect = 5e-06
Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 63/185 (34%)
Query: 447 YLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRL---TRHNGFPVIDEPPLTP 503
+++ +P++ + A V V+ + HAL + T ++ PV+D
Sbjct: 8 FMQMTVKPFL--IPADKVAH--------VQPGNYLDHALLVLTKTGYSAIPVLDT----- 52
Query: 504 APELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKE 563
+ +L GL+ + + +M + + +LE + ++E
Sbjct: 53 SYKLHGLI--------------------SMTMMMDAILGLE-----RIEFERLETMKVEE 87
Query: 564 EEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRH--LCVVPKTPGRPPIVGILT 621
+ N + + SL KA L + H +CV G GI T
Sbjct: 88 -----------VMNRNIPRLRLDDSLMKAV----GLIVNHPFVCVENDD-GY--FAGIFT 129
Query: 622 RHDFM 626
R + +
Sbjct: 130 RREVL 134
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 44.8 bits (107), Expect = 7e-06
Identities = 22/169 (13%), Positives = 45/169 (26%), Gaps = 57/169 (33%)
Query: 461 ASDVVSGPLITFSG---VEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517
DV+ + T +E V V+ E G+V
Sbjct: 3 VEDVMVTDVDTIDITASLEDVLRNYVE---NAKGSSVVVKE------GVRVGIV------ 47
Query: 518 VLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITN 577
T D++ +G L ++ + E +
Sbjct: 48 --------------TTWDVLEAIA----------EGDDLAEVKVWE-----------VME 72
Query: 578 TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
T+ ++ +AA + + L V I+G+++ D +
Sbjct: 73 RDLVTISPRATIKEAAEKMVKNVVWRLLVEED--DE--IIGVISATDIL 117
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 47.1 bits (112), Expect = 8e-06
Identities = 21/171 (12%), Positives = 49/171 (28%), Gaps = 34/171 (19%)
Query: 456 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSH 515
M V + ++T + + + ++ PV++ ++ G++
Sbjct: 1 MFVRVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNA----GNNKVVGII---- 52
Query: 516 LLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPI 575
T DI+ K + I E E I
Sbjct: 53 ----------------TSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVRE-------I 89
Query: 576 TNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+ T+ E + +A F + +V + ++ ++T D +
Sbjct: 90 MEENVITLKENADIDEAIETFLTKNVGGAPIVNDE-NQ--LISLITERDVI 137
Score = 44.0 bits (104), Expect = 8e-05
Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 41/180 (22%)
Query: 448 LEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPEL 507
+ A + +N V D ++ +I + E++ ++ + PV+ E L
Sbjct: 137 IRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSE------GRL 190
Query: 508 CGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAH-DFAKAGSGKGVKLEDLDIKEEEM 566
G++ T +D ++ + F +G ++ ++ ++E
Sbjct: 191 VGII--------------------TSTDFIKLLGSDWAFNHMQTGNVREITNVRMEE--- 227
Query: 567 EMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
I T E L K A + + L VV + R I GI+T D +
Sbjct: 228 --------IMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDEN-LR--IKGIITEKDVL 276
Score = 29.0 bits (65), Expect = 5.3
Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 435 VYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFP 494
+ +++ + N+ +++ +IT +K+ I + P
Sbjct: 199 FIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALP 258
Query: 495 VIDEPPLTPAPELCGLVLRSHLLVLL 520
V+DE + G++ +L
Sbjct: 259 VVDE-----NLRIKGIITEKDVLKYF 279
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 44.5 bits (106), Expect = 1e-05
Identities = 25/168 (14%), Positives = 48/168 (28%), Gaps = 56/168 (33%)
Query: 462 SDVVSGPLITFSG---VEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518
++ L+ V++ +M VI++ + G
Sbjct: 10 KVYMTKKLLGVKPSTSVQEASRLMME---FDVGSLVVIND-----DGNVVGFF------- 54
Query: 519 LLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT 578
T SDI+RR G + +E + M
Sbjct: 55 -------------TKSDIIRRVIVP-----GLPYDIPVERI--------M--------TR 80
Query: 579 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+ T L + + ++H+ + + G+ IVGI T D +
Sbjct: 81 NLITANVNTPLGEVLRKMAEHRIKHILIEEE--GK--IVGIFTLSDLL 124
Score = 36.4 bits (85), Expect = 0.007
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 565 EMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHD 624
M+M + V + S+ +A+ L + + L V+ G VG T+ D
Sbjct: 2 VMDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-GNV--VGFFTKSD 58
Query: 625 FM 626
+
Sbjct: 59 II 60
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 44.1 bits (105), Expect = 2e-05
Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 49/166 (29%)
Query: 461 ASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 520
A D+++ + E + +R P+ + L G++
Sbjct: 10 ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD-----DDRLHGML--------- 55
Query: 521 KGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSP 580
T DI+ + A G+ E + S
Sbjct: 56 -----------TDRDIVIKGLAA---------GLDPNTATAGE-----------LARDSI 84
Query: 581 YTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
Y V S+ + + + +R + V+ + R VGI+T D
Sbjct: 85 YYVDANASIQEMLNVMEEHQVRRVPVISE--HRL--VGIVTEADIA 126
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 46.3 bits (110), Expect = 2e-05
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 41/178 (23%)
Query: 449 EAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELC 508
H Y + + ++ S +++G+ + V +E ++
Sbjct: 10 HHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE-------KIE 62
Query: 509 GLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEM 568
GL+ T D++ +++ G + I +
Sbjct: 63 GLL--------------------TTRDLLSTVESYCKDSCSQGDLYHISTTPIID----- 97
Query: 569 FVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+P TV T A + L VV + VGI+T +F+
Sbjct: 98 ------YMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-DK--PVGIVTEREFL 146
Score = 44.0 bits (104), Expect = 7e-05
Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 45/180 (25%)
Query: 448 LEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPEL 507
+ + +S + T ++ + + PVID+ ++
Sbjct: 145 FLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-----DNKV 199
Query: 508 CGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRF-KAHDFAKAGSGKGVKLEDLDIKEEEM 566
G+V T + +++ KA D G ++D+
Sbjct: 200 VGIV--------------------TVVNAIKQLAKAVDKLDPDYFYGKVVKDV------- 232
Query: 567 EMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
M + T+ E S+ +AA + L ++ K I GI+T D +
Sbjct: 233 -MVTN--------LVTIDELASVNRAAAEMIVKRIGSLLILNKD-NT--IRGIITERDLL 280
Score = 30.1 bits (68), Expect = 2.3
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 439 IVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDE 498
+K + Y V DV+ L+T + V + + R ++++
Sbjct: 208 AIKQLAKAV-DKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK 266
Query: 499 PPLTPAPELCGLVLRSHLL 517
+ G++ LL
Sbjct: 267 -----DNTIRGIITERDLL 280
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 44.3 bits (105), Expect = 3e-05
Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 48/166 (28%)
Query: 461 ASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLL 520
+++ T + V + + + G V D+ GL+
Sbjct: 11 VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-----NGNDVGLL--------- 56
Query: 521 KGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSP 580
+ I++RF + K +++ I+ +
Sbjct: 57 -----------SERSIIKRFIP---------RNKKPDEVPIRL-----------VMRKPI 85
Query: 581 YTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
V + A + L VV GR +VGI+T D
Sbjct: 86 PKVKSDYDVKDVAAYLSENGLERCAVVDDP-GR--VVGIVTLTDLS 128
Score = 36.6 bits (85), Expect = 0.011
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 564 EEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRH 623
MF+ + I N++ TV ++ A + + L L V G VG+L+
Sbjct: 3 RGGHMFMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GND--VGLLSER 59
Query: 624 DFM 626
+
Sbjct: 60 SII 62
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 43.8 bits (104), Expect = 3e-05
Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 48/173 (27%)
Query: 457 KNLVASDVVSGPLITFS---GVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLR 513
+ D+++ T + ++M P++D +L G+V
Sbjct: 3 LMIKVEDMMTRHPHTLLRTHTLNDAKHLM---EALDIRHVPIVDA-----NKKLLGIV-- 52
Query: 514 SHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLH 573
+ D+ + + + + E
Sbjct: 53 ------------------SQRDL--LAAQESSLQRSAQGDSLAFETPLFE---------- 82
Query: 574 PITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+ +T +V L ++A+ ++ + L VV K +VGI+T DF+
Sbjct: 83 -VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DV--LVGIITDSDFV 130
Score = 36.1 bits (84), Expect = 0.013
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 578 TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHI 637
P+T++ T +L A L L +RH+ +V + +GI+++ D + L
Sbjct: 13 RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKL--LGIVSQRDLLAAQESSLQRSA 69
Query: 638 VNRHK 642
Sbjct: 70 QGDSL 74
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 43.5 bits (103), Expect = 3e-05
Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 49/150 (32%)
Query: 480 NIMHALRL---TRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDI 536
+ HAL + + ++ PV+D +L GL+ + + I
Sbjct: 35 GLEHALLVLVKSGYSAIPVLDP-----MYKLHGLI--------------------STAMI 69
Query: 537 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLF 596
+ + + +LE++ +++ + + S AKA +
Sbjct: 70 LDGILGLERIEF-----ERLEEMKVEQ-----------VMKQDIPVLKLEDSFAKALEMT 113
Query: 597 RQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+C V + G GILTR +
Sbjct: 114 ID--HPFICAVNED-GY--FEGILTRRAIL 138
Score = 35.1 bits (81), Expect = 0.024
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 562 KEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILT 621
K+E ++FV I++ V L A ++ + + V+ + + G+++
Sbjct: 9 KDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-YK--LHGLIS 65
Query: 622 RHDFM 626
+
Sbjct: 66 TAMIL 70
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 42.6 bits (101), Expect = 5e-05
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 578 TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
SP TV++T + AA R+ +RH+ VV K G VG+L+ D
Sbjct: 78 NSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKN-GEL--VGVLSIRDLC 123
Score = 34.2 bits (79), Expect = 0.042
Identities = 7/52 (13%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 575 ITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+ P ++ ET ++ + A + + + + + P V +++ D +
Sbjct: 10 LLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRP-VAVVSERDIL 60
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 42.6 bits (101), Expect = 5e-05
Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 54/176 (30%)
Query: 456 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSH 515
+KN+ DV++ +IT E V + + + PVID+ ++ G+V
Sbjct: 5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD-----ENKVIGIV---- 55
Query: 516 LLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPI 575
T +DI + + D+ M
Sbjct: 56 ----------------TTTDIGYN-----LIRDKYTLETTIGDV------M--------- 79
Query: 576 TNTSPYTVVETMSLAKAAVLFRQLAL-----RHLCVVPKTPGRPPIVGILTRHDFM 626
T+ E S+ +A L VV K + +VGI++ D +
Sbjct: 80 -TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKN-NK--LVGIISDGDII 131
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 41.7 bits (98), Expect = 1e-04
Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 53/152 (34%)
Query: 480 NIMHALRL---TRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDI 536
N+ HAL + T + PV+D + L GL+ + I
Sbjct: 34 NLEHALLVLTKTGYTAIPVLDP-----SYRLHGLI--------------------GTNMI 68
Query: 537 MRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLF 596
M + + KL+ + ++E + T + + K
Sbjct: 69 MNSIFGLERIEFE-----KLDQITVEE-----------VMLTDIPRLHINDPIMKGF--- 109
Query: 597 RQLALRH--LCVVPKTPGRPPIVGILTRHDFM 626
+ + + +CV GI TR +
Sbjct: 110 -GMVINNGFVCVENDE-QV--FEGIFTRRVVL 137
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 41.2 bits (97), Expect = 2e-04
Identities = 21/174 (12%), Positives = 42/174 (24%), Gaps = 51/174 (29%)
Query: 456 MKNLVASDVVSGPLITFSG---VEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVL 512
+K L D S P + V M L V+D L G++
Sbjct: 14 LKKLQVKDFQSIP-VVIHENVSVYDAICTM---FLEDVGTLFVVDR-----DAVLVGVL- 63
Query: 513 RSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDL 572
+ D++R V + + + +
Sbjct: 64 -------------------SRKDLLRASIGQ-----QELTSVPVHIIMTRMPNI------ 93
Query: 573 HPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+ A + + L V+ T ++G +T+ +
Sbjct: 94 --------TVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMT 139
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 39.5 bits (93), Expect = 6e-04
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 51/171 (29%)
Query: 456 MKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSH 515
M+ + + + +I+ + K+ +I + V+D + G++
Sbjct: 1 MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN------KPVGII---- 50
Query: 516 LLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPI 575
T DI++ + L+ K EE
Sbjct: 51 ----------------TERDIVKAIGKG-------------KSLETKAEE---------F 72
Query: 576 TNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
S T+ E + A L RQ +RHL VV G + GI++ D
Sbjct: 73 MTASLITIREDSPITGALALMRQFNIRHLPVVDDK-GN--LKGIISIRDIT 120
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 38.3 bits (90), Expect = 0.002
Identities = 27/159 (16%), Positives = 46/159 (28%), Gaps = 42/159 (26%)
Query: 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTK 527
+ + V +++ L R + P+IDE L +
Sbjct: 20 NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-----NGYLINVY---------------- 58
Query: 528 QKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETM 587
D++ K + L + E M D + YT +
Sbjct: 59 ----EAYDVLGLIKGGIY---------NDLSLSVGEALMRRSDDFEGV-----YTCTKND 100
Query: 588 SLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
L+ R+ + VV GR VG+LT D +
Sbjct: 101 KLSTIMDNIRKARVHRFFVVDDV-GRL--VGVLTLSDIL 136
Score = 31.0 bits (71), Expect = 0.52
Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 571 DLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 630
DL+ IT + + T + + Q + + ++ + G ++ + +D +
Sbjct: 12 DLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GY--LINVYEAYDVLGLIK 68
Query: 631 LGLY 634
G+Y
Sbjct: 69 GGIY 72
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 39.5 bits (92), Expect = 0.003
Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 39/184 (21%)
Query: 449 EAHAEPY---MKNLVASDVV--SGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTP 503
E+++ Y MK+ D++ S L+ F +V AL P+ D +
Sbjct: 22 ESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWD----SK 77
Query: 504 APELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKE 563
G++ T +D + K ++ +++E
Sbjct: 78 KQSFVGML--------------------TITDFINIL-------HRYYKSALVQIYELEE 110
Query: 564 EEMEMFVDLHPITNTSP-YTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTR 622
++E + +++ + P + SL A + + L V+ G + ILT
Sbjct: 111 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN--TLYILTH 168
Query: 623 HDFM 626
+
Sbjct: 169 KRIL 172
Score = 36.9 bits (85), Expect = 0.018
Identities = 21/192 (10%), Positives = 43/192 (22%), Gaps = 44/192 (22%)
Query: 437 DQIVKLKGLPYLEAHAEPYMKNLVAS--DVVSGPLITFSGVEKVGNIMHALRLTRHNGFP 494
+I+K L E +M + + V + R + P
Sbjct: 169 KRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALP 228
Query: 495 VIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGV 554
V+DE + + + ++ L K + + R
Sbjct: 229 VVDE-----KGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHR--------------- 268
Query: 555 KLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRP 614
+L + + L VV +
Sbjct: 269 -------------------SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEH-DVV 308
Query: 615 PIVGILTRHDFM 626
GI++ D +
Sbjct: 309 --KGIVSLSDIL 318
Score = 35.3 bits (81), Expect = 0.048
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 571 DLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 630
+L T + V T + A +F Q + L VV + GR +V I ++ D +
Sbjct: 194 ELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-GR--VVDIYSKFDVINLAA 250
Query: 631 LGLYPHI 637
Y ++
Sbjct: 251 EKTYNNL 257
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 37.6 bits (88), Expect = 0.003
Identities = 16/159 (10%), Positives = 37/159 (23%), Gaps = 42/159 (26%)
Query: 468 PLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLVLLKGKKFTK 527
+ V + R + PV+DE + +
Sbjct: 30 NIAMVRTTTPVYVALGIFVQHRVSALPVVDE-----KGRVVDIY---------------- 68
Query: 528 QKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETM 587
+ D++ + +LD+ + +
Sbjct: 69 ----SKFDVINLAAEKTY-----------NNLDVSVTK---ALQHRSHYFEGVLKCYLHE 110
Query: 588 SLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+L + + L VV + GI++ D +
Sbjct: 111 TLETIINRLVEAEVHRLVVVDEN-DVV--KGIVSLSDIL 146
Score = 29.9 bits (68), Expect = 1.1
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 571 DLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHV 630
+L T + V T + A +F Q + L VV + GR +V I ++ D +
Sbjct: 22 ELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-GR--VVDIYSKFDVINLAA 78
Query: 631 LGLYPHI 637
Y ++
Sbjct: 79 EKTYNNL 85
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 36.6 bits (85), Expect = 0.005
Identities = 18/170 (10%), Positives = 40/170 (23%), Gaps = 51/170 (30%)
Query: 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHL 516
++ S + F+ + L + PV+D G+V
Sbjct: 3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGE------RYLGMV----- 51
Query: 517 LVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPIT 576
S ++ K K KL + ++
Sbjct: 52 ---------------HLSRLLEGRKGWPTVK------EKLGEELLET------------- 77
Query: 577 NTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+ L + + + + GR G+++R +
Sbjct: 78 ---VRSYRPGEQLFDNLISVAAAKCSVVPLADED-GR--YEGVVSRKRIL 121
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 36.9 bits (86), Expect = 0.006
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 15/83 (18%)
Query: 544 DFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRH 603
D KA +G+G + + + + + RH
Sbjct: 78 DLVKAVAGQGAASLQQSVSV-----------AMTKNVVRCQHNSTTDQLMEIMTGGRFRH 126
Query: 604 LCVVPKTPGRPPIVGILTRHDFM 626
+ V GR + GI++ D +
Sbjct: 127 VPVEEN--GR--LAGIISIGDVV 145
Score = 34.2 bits (79), Expect = 0.061
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 560 DIKEEEMEMFV-DLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVG 618
++ + M FV DL TV +S+ +AA + + V G +G
Sbjct: 16 NLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-GVV--LG 72
Query: 619 ILTRHDFM 626
I T D +
Sbjct: 73 IFTERDLV 80
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 36.9 bits (86), Expect = 0.007
Identities = 23/168 (13%), Positives = 49/168 (29%), Gaps = 50/168 (29%)
Query: 459 LVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLLV 518
L A + T + + V + + + V+D ++ G+V
Sbjct: 13 LKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD------DIAGIV------- 59
Query: 519 LLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNT 578
T D R+ + ++E I
Sbjct: 60 -------------TERDYARKVVLQ---------ERSSKATRVEE-----------IMTA 86
Query: 579 SPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
V + S + L + +RHL V+ G+ ++G+++ D +
Sbjct: 87 KVRYVEPSQSTDECMALMTEHRMRHLPVLDG--GK--LIGLISIGDLV 130
>1ksq_A Latent transforming growth factor beta binding protein 1;
structure, LTBP-1, TGF-beta, TB domain, latency
associated propeptide, LAP; NMR {Homo sapiens} SCOP:
g.23.1.1
Length = 75
Score = 34.5 bits (79), Expect = 0.010
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 230 YSIINERGPIFKVLLVAAVSLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNF 289
Y +N+ VL V+ CC+ G W +C E CP +G + +
Sbjct: 13 YYNLNDASLCDNVLAPN-VTKQECCCTSGAGWGDNC-------EIFPCPVLG-TAEFTEM 63
Query: 290 QCPAG 294
CP G
Sbjct: 64 -CPKG 67
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 35.3 bits (82), Expect = 0.016
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 544 DFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRH 603
DF++ ++D +KE I V + L ++ +RH
Sbjct: 59 DFSRKSYLLDKPVKDTQVKE-----------IMTRQVAYVDLNNTNEDCMALITEMRVRH 107
Query: 604 LCVVPKTPGRPPIVGILTRHDFM 626
L V+ G+ ++G+L+ D +
Sbjct: 108 LPVLDD--GK--VIGLLSIGDLV 126
Score = 28.3 bits (64), Expect = 3.9
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 571 DLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
L + + S+ A + L V+ + +VGILT DF
Sbjct: 10 HLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVM--KDEK--LVGILTERDFS 61
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 35.9 bits (83), Expect = 0.020
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 561 IKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGIL 620
I M V V E+ ++ + RQ V + G G++
Sbjct: 6 IHHHHHHMKV--KKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GH--FRGVV 60
Query: 621 TRHD 624
+ D
Sbjct: 61 NKED 64
Score = 34.7 bits (80), Expect = 0.051
Identities = 27/176 (15%), Positives = 50/176 (28%), Gaps = 58/176 (32%)
Query: 451 HAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGL 510
H +MK V+ V +H +R + N V D G+
Sbjct: 8 HHHHHMK---VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR-----EGHFRGV 59
Query: 511 VLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFV 570
V D++ L+ ++
Sbjct: 60 V--------------------NKEDLL-----------------DLDLDSSVFNKV---- 78
Query: 571 DLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+ + V E ++ A +LF + +L VV + R + G ++ HDF+
Sbjct: 79 ------SLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEE-MR--LKGAVSLHDFL 125
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 36.5 bits (84), Expect = 0.025
Identities = 28/240 (11%), Positives = 74/240 (30%), Gaps = 47/240 (19%)
Query: 403 ILLELTNNLLMLPLV-----MLVLLISKTVADSFNQGVYDQIVKLKGLPYLEAHAEPYMK 457
+LL+ N+++ PL L++ T + Q + K + + L+ ++
Sbjct: 57 VLLQ--NSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIE 114
Query: 458 NLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHLL 517
+ D + + + + +R P+ID+ T + ++
Sbjct: 115 RALGVDQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVL------ 166
Query: 518 VLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPITN 577
T I++ + + DL+ IT
Sbjct: 167 --------------TQYRILKFVALNCRETHFLKIPIG---------------DLNIITQ 197
Query: 578 TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHI 637
+ + T + + Q + + ++ + G ++ + +D + G+Y +
Sbjct: 198 DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GY--LINVYEAYDVLGLIKGGIYNDL 254
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 32.1 bits (74), Expect = 0.14
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 578 TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
P T +S+ +AA + + + HL +V + G+ +VGI+T D
Sbjct: 9 KPPITAHSNISIMEAAKILIKHNINHLPIVDEH-GK--LVGIITSWDIA 54
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 33.4 bits (75), Expect = 0.19
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 440 VKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEP 499
V A V + L+ S + V ++ + TR++ +PVIDE
Sbjct: 167 VITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE- 225
Query: 500 PLTPAPELCGLVLRSHLL 517
++ G + R HL+
Sbjct: 226 ----NNKVVGSIARFHLI 239
Score = 31.0 bits (69), Expect = 0.85
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 554 VKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGR 613
+K+EDL++ + + +SL A + R L+ + V
Sbjct: 7 LKVEDLEMDK----------------IAPLAPEVSLKMAWNIMRDKNLKSIPVADG---N 47
Query: 614 PPIVGILTRHDFMPEHVLGLYPHIVNRH 641
++G+L+ + ++ +I+ +
Sbjct: 48 NHLLGMLSTSNITATYMDIWDSNILAKS 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.28
Identities = 71/567 (12%), Positives = 142/567 (25%), Gaps = 208/567 (36%)
Query: 188 FDVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYS------IINERGPIFK 241
F+ + Y D+L+V F F + D S II + +
Sbjct: 9 FETGEHQYQYK--DILSV-FEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 242 VLLVAAVSLLTSCCSYG---------------LPWLSHCIPCPSYLEADRCPTVGRSGNY 286
L L + S +L + + S
Sbjct: 64 TLR-----LFWTLLSKQEEMVQKFVEEVLRINYKFL---------MSPIKTEQRQPSMMT 109
Query: 287 KNF-QCPAGHYND---LASLFLNTND--DAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGI 340
+ + + YND A ++ +R L L +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ----------ALLELRP------AKNV 153
Query: 341 ITYGIAVPSGLFIPVILAGASYGRLVGNLL---GALSDLDTGLFAL-LGAASFLGGTMRM 396
+ G+ G +G ++ + ++ +D +F L L + + M
Sbjct: 154 LIDGVL---G-------SGKTW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 397 TVSLCVIL-------------LELTNNLLMLPLVMLV--------LLI-----SKTVADS 430
L + ++L + + L L+ LL+ + ++
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 431 FN-----------QGVYDQIVKLKGLPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVG 479
FN + V D L + + L +V S K
Sbjct: 262 FNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMTLTPDEVKS----LLL---KYL 311
Query: 480 NIMHALRLTRHNGFPVIDEPP--LTPAPELCGLV---LRSHLLVL-----LKGKKFTKQ- 528
+ D P LT P ++ +R L + K T
Sbjct: 312 DC------------RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 529 ----KTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDI------------KEEEMEMFVDL 572
+ ++ + F + V I + ++ + V+
Sbjct: 360 ESSLNVLEPAEYRKMFD--RLS-------VFPPSAHIPTILLSLIWFDVIKSDVMVVVN- 409
Query: 573 HPITNTSPYTVVETMSLAKAAVLFRQ-------LALRHLCVVPKTPGRPPI-VGILTR-- 622
L K +++ +Q + +L + K + I+
Sbjct: 410 ---------------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 623 -------HDFMPEHVLG-LYPHIVNRH 641
D +P ++ Y HI H
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIG-HH 480
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 32.5 bits (74), Expect = 0.42
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 575 ITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+ V E +L KAA L + R + VV G+ VGILT D +
Sbjct: 65 LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-GK--PVGILTVGDII 113
Score = 30.9 bits (70), Expect = 1.0
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 580 PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHD 624
P T+ + A LF++ +R VV K G+ +VGI++
Sbjct: 11 PVTITLPATRNYALELFKKYKVRSFPVVNKE-GK--LVGIISVKR 52
Score = 28.6 bits (64), Expect = 6.3
Identities = 24/177 (13%), Positives = 52/177 (29%), Gaps = 19/177 (10%)
Query: 450 AHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCG 509
K + + + + AL L+ PV+D L G
Sbjct: 117 FAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS-----EGNLVG 171
Query: 510 LVLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMF 569
+V + LL + + K + S ++L + + E
Sbjct: 172 IVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAE------ 225
Query: 570 VDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
I M++ + A+ + ++ L V+ G ++G++ D +
Sbjct: 226 -----IMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGE-GD--LIGLIRDFDLL 274
>1apj_A Fibrillin; microfibril, TB module, marfan syndrome, connective
tissue, novel fold, extracellular matrix; NMR {Homo
sapiens} SCOP: g.23.1.1
Length = 74
Score = 29.4 bits (66), Expect = 0.68
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 16/45 (35%)
Query: 254 CCS-YGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQ--CPAGH 295
CC+ G W C CP+ + F+ CP G
Sbjct: 33 CCALKGEGWGDPCELCPTEPDEA-------------FRQICPYGS 64
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 31.4 bits (71), Expect = 0.83
Identities = 28/211 (13%), Positives = 60/211 (28%), Gaps = 28/211 (13%)
Query: 420 VLLIS----KTVADSFNQGVYDQIVKLKGLP---------------YLEAHAEPYMKNLV 460
VLL+S ++D+F+Q + ++G L +
Sbjct: 47 VLLLSTDPAHNLSDAFSQKFGKEARLVEGFDNLYAMEIDPNGSMQDLLAGQTGDGDAGMG 106
Query: 461 ASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVI--DEPPLTPAPELCGL--VLRSHL 516
V+ G+++ + L+ + I D P VL L
Sbjct: 107 GVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKAL 166
Query: 517 LVLLK-GKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPI 575
+ + ++ + KL+ L + E+ +
Sbjct: 167 AKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVME----KLDSLRVTISEVNAQFKDERL 222
Query: 576 TNTSPYTVVETMSLAKAAVLFRQLALRHLCV 606
T + E +SL + + ++LA +
Sbjct: 223 TTFVCVCIPEFLSLYETERMIQELANYGIDT 253
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G*
Length = 334
Score = 30.2 bits (68), Expect = 2.0
Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 30/174 (17%)
Query: 455 YMKNLVASDV--VSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVL 512
++++ + DV S LI F V + L L P+ D + A + GL+
Sbjct: 18 FIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWD----SEANKFAGLLT 73
Query: 513 RSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDL 572
+ + ++ + S D + L +++ + + +
Sbjct: 74 MADFVNVI-------KYYYQSSSFPEAIAEIDKFRL-------LGLREVERKIGAIPPE- 118
Query: 573 HPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVV--PKTPGRPPIVGILTRHD 624
V SL A + + R + ++ G IV +LT++
Sbjct: 119 -------TIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYR 165
Score = 27.9 bits (62), Expect = 9.6
Identities = 29/243 (11%), Positives = 73/243 (30%), Gaps = 50/243 (20%)
Query: 403 ILLELTNNLLMLPLV-----MLVLLISKTVADSFN--QGVYDQIVKLKGLPYLEAH-AEP 454
+L NN++ PL L+ T+AD N + Y + + ++
Sbjct: 49 LLTL--NNIVSAPLWDSEANKFAGLL--TMADFVNVIKYYYQSSSFPEAIAEIDKFRLLG 104
Query: 455 YMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRS 514
+ + I + + + A+ +R P+ID T + + +
Sbjct: 105 LREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSV---- 160
Query: 515 HLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHP 574
+T I++ F + + K + + + + + + +
Sbjct: 161 ----------------LTQYRILK-FISMNC------KETAMLRVPLNQMTIGTWSN--- 194
Query: 575 ITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLGLY 634
T + + + + + +V G ++ + D M G Y
Sbjct: 195 -----LATASMETKVYDVIKMLAEKNISAVPIVNSE-GT--LLNVYESVDVMHLIQDGDY 246
Query: 635 PHI 637
++
Sbjct: 247 SNL 249
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A
{Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A*
3lun_A*
Length = 262
Score = 30.0 bits (66), Expect = 2.2
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 273 EADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLFSSG 318
P G +Y + C G D+ +++ DD +F+ G
Sbjct: 200 PNQADPNFGAP-SYPHVSCSNGPNGDMFMNYMDYVDDKCMVMFTQG 244
>3fio_A A cystathionine beta-synthase domain protein fused to A
Zn-ribbon-like domain; PF1953,APC40009,cystathionine
beta-synthase domain protein; 1.81A {Pyrococcus
furiosus} PDB: 3ghd_A
Length = 70
Score = 27.2 bits (61), Expect = 3.3
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 580 PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
V ++ + A + + V+ +G++T D +
Sbjct: 2 AIVVQPKDTVDRVAKILSRNKAGSAVVM--EGDEI--LGVVTERDIL 44
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 29.5 bits (67), Expect = 3.7
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 12/80 (15%)
Query: 119 GAAAGVAGAFR-APVGGVLFALEE-----AASWWRSALLWRTFFTTAVVAVVLRGFIEFC 172
AG + + + G V+ LE S RSA + + T V + F
Sbjct: 17 AGIAGASTGYWLSAHGRVV-VLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAASRAFF 75
Query: 173 RS-----GRCGLFGQGGLIM 187
+ L ++
Sbjct: 76 DNPPAGFCEHPLLSPRPEMV 95
>3rwx_A Hypothetical bacterial outer membrane protein; transmembrane
beta-barrel, structural genomics, joint center
structural genomics, JCSG; HET: MLY MSE; 2.40A
{Bacteroides fragilis}
Length = 261
Score = 29.0 bits (63), Expect = 3.9
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 5/116 (4%)
Query: 292 PAGHYNDLASLFLNTNDDAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGL 351
+ + + N+D N+ S EF L+ + V G + +
Sbjct: 30 TDYVMGEXSVATIVPNEDGTINVTYDSGSGEFXLNNIXVTSXTFEGSGQVELSMNDXPAG 89
Query: 352 FIPVILAGASYGR----LVGNLLGALSDLD-TGLFALLGAASFLGGTMRMTVSLCV 402
L G+ + L N+ + L + L + + GT +L V
Sbjct: 90 AXDFTLTGSIDEQQXLTLXVNVPSVMGGLTIEFIQGTLPISYHVSGTYNXEANLSV 145
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 29.4 bits (66), Expect = 4.2
Identities = 36/215 (16%), Positives = 64/215 (29%), Gaps = 40/215 (18%)
Query: 420 VLLIS----KTVADSFNQGVYDQIVKLKGLPYLEA--------------HAEPYMKNLVA 461
VLLIS ++D+F K+ G L A A+ N
Sbjct: 50 VLLISTDPAHNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPL 109
Query: 462 SDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVI--DEPPLTPAPELCGLVLRSHLLVL 519
S ++ T G+++ L+ + F + D P H L
Sbjct: 110 SGMMQDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPT------------GHTLRF 157
Query: 520 LKGKKFTKQKTMTGSDIMRRF-KAHDFAKAGSGKGVKLEDLDIKEEEM-EMFVDLHPITN 577
L ++ + RF + + G +DL K E M +++
Sbjct: 158 LNFPTVLEKALGKLGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFK 217
Query: 578 TSPYTVV------ETMSLAKAAVLFRQLALRHLCV 606
T E +SL + + ++L +
Sbjct: 218 NPDLTTFVCVCISEFLSLYETERMIQELTSYEIDT 252
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 29.1 bits (66), Expect = 4.2
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 8/103 (7%)
Query: 325 LSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGNL-LGALSDLDTGLFAL 383
S + + +G+ L +P L G L GA+ L
Sbjct: 268 QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP----FL 323
Query: 384 LGAASFLGGTMRMTVSLCVILLE---LTNNLLMLPLVMLVLLI 423
G A L G ++ S + L L L+M ++ +
Sbjct: 324 AGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGL 366
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding,
transcription, transcription regulator, transcription
regulation; 3.20A {Klebsiella pneumoniae}
Length = 315
Score = 29.0 bits (65), Expect = 4.6
Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 8/126 (6%)
Query: 103 LRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRT--FFTTAV 160
+ R +I G +G + AA + L +
Sbjct: 125 VENLPQRSQSRQVICVPIIGGPSGKLESRYHVNTLTYGAAARLKAESHLADFPALLDNPL 184
Query: 161 VAVVL------RGFIEFCRSGRCGLFGQGGLIMFDVNSAKNSYSSADLLAVIFLGVIGGI 214
+ + + + S L G G + D + Y S + + V G I
Sbjct: 185 IRNGIMQSQHFKTISSYWDSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDI 244
Query: 215 FGSFYN 220
FY+
Sbjct: 245 CSRFYD 250
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 29.2 bits (66), Expect = 4.8
Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 445 LPYLEAHAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPA 504
+ H + +A + P + VG + ++ R + PV+D+
Sbjct: 371 KEPVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD---- 426
Query: 505 PELCGLVLRSHLLVLLKGKKFTKQKTMTGSDIMRR 539
+ G+V + L+ + + + +
Sbjct: 427 GSVLGVVGQETLITQIVSMNRQQSDPA--IKALNK 459
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 28.4 bits (62), Expect = 7.9
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 253 SCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAG 294
+G P + C+ C +L C R + +
Sbjct: 496 HGHCWG-PGPTQCVNCSHFLRGQECVEECRVWKGLPREYVSD 536
Score = 28.4 bits (62), Expect = 7.9
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 13/49 (26%)
Query: 253 SCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLAS 301
+C +G C C Y ++ C +CP+G DL+
Sbjct: 554 TC--FG-SEADQCAACAHYKDSSSCVA----------RCPSGVKPDLSY 589
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 28.3 bits (62), Expect = 8.4
Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 32/155 (20%)
Query: 256 SYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTNDDAIRNLF 315
SY + P P+ + + +Y N+ HYN T I
Sbjct: 8 SYIFCLVFAGAPGPTSVPLVKAHR-SSVSDYVNYDIIVRHYN-------YTGKLNIS--- 56
Query: 316 SSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRL-------VGN 368
KE + V F+ I C I+ V+L + +GN
Sbjct: 57 ---ADKENSIKLTSVVFILICCFIILENIF---------VLLTIWKTKKFHRPMYYFIGN 104
Query: 369 LLGALSDLDTGLFALLGAASFLGGTMRMTVSLCVI 403
L ALSDL G+ T ++T + +
Sbjct: 105 L--ALSDLLAGVAYTANLLLSGATTYKLTPAQWFL 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.141 0.433
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,138,014
Number of extensions: 653540
Number of successful extensions: 1731
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1617
Number of HSP's successfully gapped: 100
Length of query: 642
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 542
Effective length of database: 3,909,693
Effective search space: 2119053606
Effective search space used: 2119053606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.9 bits)