RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 006517
(642 letters)
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 164 bits (415), Expect = 5e-45
Identities = 99/435 (22%), Positives = 164/435 (37%), Gaps = 75/435 (17%)
Query: 9 INLGLAILAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAG 68
+ LA+ L AP A GSGIPE++ L + L VK FG + + G
Sbjct: 69 CSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQ--RPVRWWRVLPVKFFGGLGTLGGG 126
Query: 69 FVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDRRDLITCGAAAGVAGAF 128
V+G+EGP V G I ++ + K D R L+ GAAAG+A AF
Sbjct: 127 MVLGREGPTVQIGGNIGRMVLD------------IFRLKGDEARHTLLATGAAAGLAAAF 174
Query: 129 RAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRSGRCGLFGQGGLIMF 188
AP+ G+LF +EE +R L+ V+ + + L G L
Sbjct: 175 NAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMST---IMYRIFNHEVALIDVGKLSDA 231
Query: 189 DVNSAKNSYSSADLLAVIFLGVIGGIFGSFYNYLVDKVLRTYSIINERGPIFKVLLVAAV 248
+N+ L + LG+I GIFG +N V + ++ VL+ A+
Sbjct: 232 PLNT---------LWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAI 282
Query: 249 SLLTSCCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTND 308
L + P S G +N +
Sbjct: 283 GGLCGLLGFVAPATSG-----------------------------GGFNLIPIATAG--- 310
Query: 309 DAIRNLFSSGTSKEFHLSTLLVFFVAIYCLGIITYGIAVPSGLFIPVILAGASYGRLVGN 368
F + L+ FVA ++ + P G+F P++ G G G
Sbjct: 311 -------------NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGM 357
Query: 369 LLGAL---SDLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISK 425
+ L L+ G FA+ G + L ++R ++ +++LE+T+N ++ +++ L +
Sbjct: 358 VAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGAT 417
Query: 426 TVADSFN-QGVYDQI 439
+A + +Y I
Sbjct: 418 LLAQFTGGKPLYSAI 432
>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 49.9 bits (118), Expect = 1e-07
Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 40/189 (21%)
Query: 459 LVASDV------VSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVL 512
+A DV + V ++ + T ++GFPV+ + L G VL
Sbjct: 3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVS---RESQRLVGFVL 59
Query: 513 RSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDL 572
R L++ ++ + + ++ S I E + L
Sbjct: 60 RRDLIISIENARKKQDGVVSTSIIYFT-----------------EHSPPLPPYTPPTLKL 102
Query: 573 HPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM------ 626
I + SP+TV + + +FR+L LR V GR ++GI+T+ D +
Sbjct: 103 RNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN--GR--LLGIITKKDVLKHIAQM 158
Query: 627 ----PEHVL 631
P+ +L
Sbjct: 159 ANQDPDSIL 167
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein,
CBS tandem {Marbled electric ray (Torpedo marmorata)
[TaxId: 7788]}
Length = 160
Score = 45.4 bits (106), Expect = 3e-06
Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 25/176 (14%)
Query: 451 HAEPYMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGL 510
A Y N+ D++ + + + G+++H LR T+ FP +D P
Sbjct: 5 SANKY--NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDR 62
Query: 511 VLRSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFV 570
LL + + + E+ +
Sbjct: 63 TEVEGLLQRRISAYRRQPFEEMLTLEEIYRWE-------------------QREKNVVVN 103
Query: 571 DLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+ SP+ +VE SL K LF L L V G+ +VG++ +
Sbjct: 104 FETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM--GK--LVGVVALAEIQ 155
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 156
Score = 41.9 bits (97), Expect = 4e-05
Identities = 24/170 (14%), Positives = 51/170 (30%), Gaps = 19/170 (11%)
Query: 457 KNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRSHL 516
K + + + + AL L+ PV+D L G+V + L
Sbjct: 2 KGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEG-----NLVGIVDETDL 56
Query: 517 LVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPIT 576
L + + K + S ++L + + E I
Sbjct: 57 LRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAE-----------IM 105
Query: 577 NTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
M++ + A+ + ++ L V+ G +G++ D +
Sbjct: 106 TRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGE-GDL--IGLIRDFDLL 152
>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 159
Score = 41.0 bits (95), Expect = 9e-05
Identities = 22/174 (12%), Positives = 45/174 (25%), Gaps = 34/174 (19%)
Query: 455 YMKNLVASDV--VSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVL 512
+MK+ D+ S L+ F +V AL P+ D G++
Sbjct: 9 FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK----KQSFVGMLT 64
Query: 513 RSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDL 572
+ + +L + + + + +
Sbjct: 65 ITDFINILHRYYKSALVQIYELEEHKIETWREVY-------------------------- 98
Query: 573 HPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+ + SL A + + L V+ G + ILT +
Sbjct: 99 LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN--TLYILTHKRIL 150
>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 179
Score = 38.8 bits (89), Expect = 7e-04
Identities = 23/176 (13%), Positives = 49/176 (27%), Gaps = 30/176 (17%)
Query: 455 YMKNLVASDV--VSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVL 512
++++ + DV S LI F V + L L P+ D L +
Sbjct: 16 FIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS---EANKFAGLLTM 72
Query: 513 RSHLLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDL 572
+ V+ + + R + + + +
Sbjct: 73 ADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVE---------------RKIGAIPPET 117
Query: 573 HPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPK--TPGRPPIVGILTRHDFM 626
+ SL A + + R + ++ G IV +LT++ +
Sbjct: 118 IYVH--------PMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL 165
Score = 26.9 bits (58), Expect = 6.7
Identities = 8/69 (11%), Positives = 23/69 (33%)
Query: 455 YMKNLVASDVVSGPLITFSGVEKVGNIMHALRLTRHNGFPVIDEPPLTPAPELCGLVLRS 514
+ + I + + + A+ +R P+ID T + + ++ +
Sbjct: 103 LREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQY 162
Query: 515 HLLVLLKGK 523
+L +
Sbjct: 163 RILKFISMN 171
>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase
subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 37.5 bits (86), Expect = 0.001
Identities = 13/116 (11%), Positives = 31/116 (26%), Gaps = 8/116 (6%)
Query: 516 LLVLLKGKKFTKQKTMTGSDIMRRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMFVDLHPI 575
L + ++ + ++ + D + K D+ + +
Sbjct: 35 LGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQ-----HRSH 89
Query: 576 TNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVL 631
+L + + L VV + GI++ D + VL
Sbjct: 90 YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEH-DVV--KGIVSLSDILQALVL 142
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate
dehydrogenase CBS domains {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 120
Score = 36.7 bits (84), Expect = 0.002
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 559 LDIKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVG 618
+KEEE + F++ ++L +A + ++ L +V + +V
Sbjct: 52 DFLKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-DE--LVA 108
Query: 619 ILTRHDFM 626
I+ R D
Sbjct: 109 IIARTDLK 116
>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 36.7 bits (84), Expect = 0.002
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 566 MEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 625
+ + YT + L+ R+ + VV GR VG+LT D
Sbjct: 77 VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV-GRL--VGVLTLSDI 133
Query: 626 MPEHVLG 632
+ +LG
Sbjct: 134 LKYILLG 140
>d1ksqa_ g.23.1.1 (A:) Transforming growth factor-beta binding
protein-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 34.1 bits (78), Expect = 0.004
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 254 CCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGH 295
CC+ G W +C P CP +G + + CP G
Sbjct: 36 CCTSGAGWGDNCEIFP-------CPVLG-TAEFTEM-CPKGK 68
>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga
maritima [TaxId: 2336]}
Length = 145
Score = 34.6 bits (78), Expect = 0.012
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 578 TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
P V L +A L ++ + VV + G IVG L + +
Sbjct: 91 LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEK-GE--IVGDLNSLEIL 136
>d1uzka3 g.23.1.1 (A:1529-1604) Fibrillin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 32.3 bits (73), Expect = 0.024
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 11/42 (26%)
Query: 254 CCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGH 295
CCS G W + C CP+ + YK CP G
Sbjct: 35 CCSLGKAWGTPCEMCPAV----------NTSEYKIL-CPGGE 65
>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 153
Score = 33.8 bits (76), Expect = 0.028
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 573 HPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLG 632
P +T T L + + L VV + + GIL+ D + +++
Sbjct: 79 RPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDEN-LKL--EGILSLADIL-NYIIY 134
>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398
{Nitrosomonas europaea [TaxId: 915]}
Length = 127
Score = 31.3 bits (70), Expect = 0.15
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 566 MEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 625
+ I V + L ++ +RHL V+ G+ ++G+L+ D
Sbjct: 66 PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD--GK--VIGLLSIGDL 121
Query: 626 M 626
+
Sbjct: 122 V 122
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 123
Score = 30.6 bits (68), Expect = 0.19
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 566 MEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 625
+ S Y V S+ + + + +R + V+ + R +VGI+T D
Sbjct: 63 DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HR--LVGIVTEADI 118
Query: 626 M 626
Sbjct: 119 A 119
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE
{Enterococcus faecalis [TaxId: 1351]}
Length = 127
Score = 30.5 bits (68), Expect = 0.26
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 566 MEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 625
+ + I N +V A R + V ++GI+T D
Sbjct: 61 NDDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD-DH--LLGIVTVDDI 117
Query: 626 M 626
+
Sbjct: 118 I 118
>d1m6ba4 g.3.9.1 (A:480-580) Receptor protein-tyrosine kinase Erbb-3
Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 29.4 bits (65), Expect = 0.41
Identities = 6/39 (15%), Positives = 9/39 (23%), Gaps = 10/39 (25%)
Query: 260 PWLSHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYND 298
C C + + C + CP G
Sbjct: 70 SGSDTCAQCAHFRDGPHCVS----------SCPHGVLGA 98
>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem
{Thermotoga maritima [TaxId: 2336]}
Length = 121
Score = 29.9 bits (66), Expect = 0.42
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 566 MEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 625
+++ + + + V E ++ A +LF + +L VV + R + G ++ HDF
Sbjct: 56 LDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEE-MR--LKGAVSLHDF 112
Query: 626 M 626
+
Sbjct: 113 L 113
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 120
Score = 29.8 bits (66), Expect = 0.42
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 566 MEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDF 625
V + + T+ ++ +AA + + L V I+G+++ D
Sbjct: 60 DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED--DE--IIGVISATDI 115
Query: 626 M 626
+
Sbjct: 116 L 116
>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate
dehydrogenase CBS domains {Streptococcus pyogenes
[TaxId: 1314]}
Length = 126
Score = 29.5 bits (65), Expect = 0.51
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 10/109 (9%)
Query: 525 FTKQKTMTGSDIMRRFKAHDF------AKAGSGKGVK-LEDLDIKEEEMEMFVDLHPITN 577
F S+ + + + K V + + D++ +T+
Sbjct: 8 FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTS 67
Query: 578 TSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
T L A + + + L +V + GR + G++T D
Sbjct: 68 EHLVTAAVGTDLETAERILHEHRIEKLPLVDNS-GR--LSGLITIKDIE 113
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 29.4 bits (65), Expect = 0.60
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 565 EMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHD 624
+ + + I + T L + + ++H+ + + G+ IVGI T D
Sbjct: 65 GLPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEE--GK--IVGIFTLSD 120
Query: 625 FM 626
+
Sbjct: 121 LL 122
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 29.5 bits (65), Expect = 0.64
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 561 IKEEEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGIL 620
+ + + L + +T +V L ++A+ ++ + L VV K +VGI+
Sbjct: 66 AQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DV--LVGII 121
Query: 621 TRHDFM 626
T DF+
Sbjct: 122 TDSDFV 127
>d1apja_ g.23.1.1 (A:) Fibrillin {Human (Homo sapiens) [TaxId:
9606]}
Length = 74
Score = 27.5 bits (61), Expect = 0.99
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 15/44 (34%)
Query: 254 CCSYGLPWLSHCIPCPSYLEADRCPTVGRSGNYKNFQ--CPAGH 295
C G W C CP+ + F+ CP G
Sbjct: 34 CALKGEGWGDPCELCPTEPDEA-------------FRQICPYGS 64
>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 202
Score = 29.1 bits (65), Expect = 1.1
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 457 KNLVASDVVSGPLITFSGVEKVG---NIMHALRLTRHNGFPVI 496
K VA PL+ + E+ +M A +L
Sbjct: 116 KKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRF 158
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 28.7 bits (63), Expect = 1.3
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 4/99 (4%)
Query: 529 KTMTGSDIMRRFKAHDFAK-AGSGKGVKLEDLDIKEEEMEMFVDLHPITNTSPYTVVETM 587
K M + + D G + I + V + + V
Sbjct: 27 KIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDY 86
Query: 588 SLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFM 626
+ A + L VV GR +VGI+T D
Sbjct: 87 DVKDVAAYLSENGLERCAVVDDP-GR--VVGIVTLTDLS 122
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 27.6 bits (60), Expect = 2.2
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 580 PYTVVETMSLAKAAVLFRQLALRHLCVVPKTPGRPPIVGILTRHDFMPEHVLG 632
V E +L KAA L + R + VV G+ VGILT D +
Sbjct: 70 VPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-GK--PVGILTVGDII-RRYFA 118
>d1nqla4 g.3.9.1 (A:481-614) EGF receptor Cys-rich domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 27.2 bits (59), Expect = 3.4
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 10/46 (21%)
Query: 263 SHCIPCPSYLEADRCPTVGRSGNYKNFQCPAGHYNDLASLFLNTND 308
+CI C Y++ C CPAG + +L D
Sbjct: 73 DNCIQCAHYIDGPHCVK----------TCPAGVMGENNTLVWKYAD 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.433
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,402,924
Number of extensions: 114794
Number of successful extensions: 345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 34
Length of query: 642
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 551
Effective length of database: 1,158,166
Effective search space: 638149466
Effective search space used: 638149466
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.0 bits)