Query 006518
Match_columns 642
No_of_seqs 606 out of 3126
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 00:26:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 2E-135 5E-140 1098.4 24.8 458 134-621 1-466 (506)
2 PF03141 Methyltransf_29: Puta 99.9 5.3E-26 1.1E-30 247.8 7.1 169 432-622 34-219 (506)
3 COG2226 UbiE Methylase involve 99.8 4.1E-18 8.9E-23 173.6 11.9 106 253-360 51-161 (238)
4 PF01209 Ubie_methyltran: ubiE 99.7 2.2E-17 4.8E-22 168.4 10.6 105 253-358 47-156 (233)
5 PLN02336 phosphoethanolamine N 99.7 2.8E-16 6E-21 175.2 14.1 101 254-358 38-145 (475)
6 PLN02233 ubiquinone biosynthes 99.7 8.3E-16 1.8E-20 159.2 15.0 107 253-360 73-187 (261)
7 PF08241 Methyltransf_11: Meth 99.7 2.6E-16 5.6E-21 134.6 9.2 93 258-353 1-95 (95)
8 PRK10258 biotin biosynthesis p 99.7 7.1E-16 1.5E-20 157.7 12.9 134 219-360 12-145 (251)
9 KOG1540 Ubiquinone biosynthesi 99.5 6.8E-14 1.5E-18 141.8 12.5 131 227-358 66-217 (296)
10 COG4106 Tam Trans-aconitate me 99.5 4.5E-14 9.8E-19 140.1 10.8 203 253-495 30-233 (257)
11 PRK14103 trans-aconitate 2-met 99.5 7.4E-14 1.6E-18 143.6 12.1 100 253-357 29-128 (255)
12 PF13489 Methyltransf_23: Meth 99.5 1.5E-13 3.2E-18 129.2 13.1 98 253-359 22-119 (161)
13 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.2E-14 6.9E-19 143.9 8.5 106 253-362 59-168 (243)
14 PLN02396 hexaprenyldihydroxybe 99.5 1.5E-13 3.3E-18 146.5 14.1 103 253-359 131-239 (322)
15 TIGR02072 BioC biotin biosynth 99.5 1.7E-13 3.6E-18 137.1 13.4 106 253-360 34-140 (240)
16 PLN02244 tocopherol O-methyltr 99.5 1.7E-13 3.7E-18 147.1 13.6 103 253-358 118-226 (340)
17 PRK05785 hypothetical protein; 99.5 1.7E-13 3.6E-18 139.2 11.5 89 254-348 52-140 (226)
18 TIGR02752 MenG_heptapren 2-hep 99.5 4.1E-13 8.8E-18 135.4 13.8 105 253-358 45-154 (231)
19 PRK11088 rrmA 23S rRNA methylt 99.5 7E-13 1.5E-17 137.9 14.2 104 253-364 85-190 (272)
20 PTZ00098 phosphoethanolamine N 99.5 5E-13 1.1E-17 138.7 12.7 104 253-358 52-159 (263)
21 PF05219 DREV: DREV methyltran 99.5 7.7E-14 1.7E-18 142.7 6.4 200 208-430 52-255 (265)
22 PRK01683 trans-aconitate 2-met 99.4 6.7E-13 1.4E-17 136.2 13.0 102 253-357 31-132 (258)
23 PF13847 Methyltransf_31: Meth 99.4 5.5E-13 1.2E-17 126.3 10.8 103 253-357 3-112 (152)
24 PRK11036 putative S-adenosyl-L 99.4 6.5E-13 1.4E-17 136.7 12.0 103 253-359 44-153 (255)
25 TIGR00740 methyltransferase, p 99.4 2.1E-12 4.5E-17 131.5 13.8 103 253-358 53-164 (239)
26 PF12847 Methyltransf_18: Meth 99.4 8.2E-13 1.8E-17 117.6 9.5 101 254-356 2-112 (112)
27 PRK08317 hypothetical protein; 99.4 2.4E-12 5.3E-17 128.4 13.7 103 254-357 20-126 (241)
28 PLN02490 MPBQ/MSBQ methyltrans 99.4 2.2E-12 4.9E-17 138.3 13.4 103 253-357 113-217 (340)
29 PRK11207 tellurite resistance 99.4 4.1E-12 9E-17 126.2 13.0 96 254-354 31-133 (197)
30 PF13649 Methyltransf_25: Meth 99.4 7E-13 1.5E-17 117.1 6.7 93 257-349 1-101 (101)
31 PLN02336 phosphoethanolamine N 99.4 4.5E-12 9.7E-17 141.5 13.8 103 253-358 266-372 (475)
32 TIGR00477 tehB tellurite resis 99.4 7.3E-12 1.6E-16 124.3 13.8 98 254-355 31-133 (195)
33 PRK15068 tRNA mo(5)U34 methylt 99.4 4.6E-12 1E-16 135.3 12.8 101 253-357 122-228 (322)
34 PRK11873 arsM arsenite S-adeno 99.4 4.4E-12 9.5E-17 131.4 11.8 105 253-358 77-186 (272)
35 PRK15451 tRNA cmo(5)U34 methyl 99.3 1.1E-11 2.3E-16 127.4 13.6 103 253-358 56-167 (247)
36 KOG4300 Predicted methyltransf 99.3 7.2E-12 1.6E-16 123.8 10.1 102 255-359 78-186 (252)
37 TIGR00452 methyltransferase, p 99.3 1.5E-11 3.3E-16 130.7 12.6 101 253-357 121-227 (314)
38 PF08242 Methyltransf_12: Meth 99.3 8.5E-13 1.8E-17 115.7 2.5 92 258-351 1-99 (99)
39 TIGR03587 Pse_Me-ase pseudamin 99.3 4.1E-11 9E-16 120.0 12.9 101 253-357 43-144 (204)
40 PRK12335 tellurite resistance 99.3 4.6E-11 1E-15 125.3 13.6 97 254-355 121-223 (287)
41 PRK00107 gidB 16S rRNA methylt 99.3 5.2E-11 1.1E-15 117.9 13.2 117 254-390 46-167 (187)
42 smart00828 PKS_MT Methyltransf 99.3 2.4E-11 5.2E-16 121.9 10.8 100 255-357 1-106 (224)
43 PRK06922 hypothetical protein; 99.3 1.8E-11 3.8E-16 139.5 10.8 104 253-357 418-539 (677)
44 smart00138 MeTrc Methyltransfe 99.2 3.4E-11 7.4E-16 125.2 11.7 103 253-355 99-242 (264)
45 KOG1270 Methyltransferases [Co 99.2 1.1E-11 2.3E-16 126.7 7.1 100 254-360 90-200 (282)
46 PF02353 CMAS: Mycolic acid cy 99.2 4.3E-11 9.3E-16 125.1 11.1 101 253-358 62-169 (273)
47 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 1.1E-10 2.3E-15 115.9 13.4 104 253-357 39-145 (223)
48 PRK00216 ubiE ubiquinone/menaq 99.2 1.5E-10 3.2E-15 116.2 13.9 104 254-358 52-161 (239)
49 PRK11705 cyclopropane fatty ac 99.2 7.4E-11 1.6E-15 128.9 12.5 101 253-358 167-270 (383)
50 PRK00121 trmB tRNA (guanine-N( 99.2 3.8E-11 8.3E-16 119.8 8.9 103 253-357 40-158 (202)
51 PF07021 MetW: Methionine bios 99.2 5.8E-11 1.3E-15 117.1 9.8 100 253-358 13-112 (193)
52 PRK06202 hypothetical protein; 99.2 1.9E-10 4.1E-15 116.6 12.0 104 253-359 60-170 (232)
53 PF05401 NodS: Nodulation prot 99.2 3E-10 6.4E-15 112.5 12.2 100 253-356 43-147 (201)
54 TIGR03840 TMPT_Se_Te thiopurin 99.1 3.5E-10 7.6E-15 114.2 13.0 100 254-356 35-153 (213)
55 PF03848 TehB: Tellurite resis 99.1 3E-10 6.5E-15 112.8 12.1 99 254-356 31-134 (192)
56 PRK11188 rrmJ 23S rRNA methylt 99.1 2.3E-10 4.9E-15 115.1 11.5 99 253-358 51-168 (209)
57 TIGR02469 CbiT precorrin-6Y C5 99.1 9.8E-10 2.1E-14 98.9 13.5 98 254-356 20-123 (124)
58 COG2230 Cfa Cyclopropane fatty 99.1 4.2E-10 9.2E-15 117.4 12.3 116 232-360 59-181 (283)
59 TIGR00138 gidB 16S rRNA methyl 99.1 5.8E-10 1.3E-14 109.8 12.5 96 254-356 43-143 (181)
60 KOG1541 Predicted protein carb 99.1 4.1E-10 8.9E-15 112.5 11.0 103 253-359 50-164 (270)
61 PF05175 MTS: Methyltransferas 99.1 2.1E-09 4.6E-14 104.3 14.3 100 254-356 32-141 (170)
62 KOG3010 Methyltransferase [Gen 99.1 2.1E-10 4.5E-15 116.0 7.4 96 254-354 34-136 (261)
63 TIGR00537 hemK_rel_arch HemK-r 99.1 2.6E-09 5.5E-14 104.2 14.8 100 254-358 20-143 (179)
64 TIGR00091 tRNA (guanine-N(7)-) 99.1 5.1E-10 1.1E-14 110.9 9.6 102 254-357 17-134 (194)
65 PRK13944 protein-L-isoaspartat 99.0 1.9E-09 4.1E-14 107.9 12.9 95 254-355 73-173 (205)
66 PRK05134 bifunctional 3-demeth 99.0 1.6E-09 3.5E-14 109.5 12.2 102 253-358 48-154 (233)
67 TIGR02021 BchM-ChlM magnesium 99.0 1.2E-09 2.5E-14 109.8 10.5 96 253-354 55-157 (219)
68 PRK09489 rsmC 16S ribosomal RN 99.0 2.7E-09 5.8E-14 115.1 13.8 98 255-356 198-304 (342)
69 TIGR02081 metW methionine bios 99.0 1.7E-09 3.6E-14 106.9 10.7 96 254-357 14-111 (194)
70 TIGR01983 UbiG ubiquinone bios 99.0 2.1E-09 4.5E-14 107.7 11.4 102 253-358 45-152 (224)
71 PRK13942 protein-L-isoaspartat 99.0 2.4E-09 5.2E-14 107.7 11.9 95 254-355 77-176 (212)
72 TIGR00080 pimt protein-L-isoas 99.0 2.8E-09 6.1E-14 107.2 11.9 96 253-355 77-177 (215)
73 PF08003 Methyltransf_9: Prote 99.0 2.8E-09 6E-14 111.8 11.7 102 253-358 115-222 (315)
74 TIGR00406 prmA ribosomal prote 99.0 3.4E-09 7.4E-14 111.5 12.6 99 254-358 160-262 (288)
75 PRK13255 thiopurine S-methyltr 99.0 4.3E-09 9.2E-14 106.7 12.8 98 254-354 38-154 (218)
76 PLN03075 nicotianamine synthas 99.0 4.4E-09 9.5E-14 110.8 12.5 102 253-355 123-233 (296)
77 COG4976 Predicted methyltransf 99.0 2.7E-10 5.7E-15 114.4 3.1 101 253-357 125-227 (287)
78 PRK08287 cobalt-precorrin-6Y C 99.0 8.3E-09 1.8E-13 101.3 13.3 98 253-357 31-133 (187)
79 TIGR02716 C20_methyl_CrtF C-20 99.0 5.6E-09 1.2E-13 110.3 12.7 102 253-358 149-257 (306)
80 PLN02232 ubiquinone biosynthes 99.0 1.9E-09 4.2E-14 103.7 8.4 77 282-359 1-85 (160)
81 PRK15001 SAM-dependent 23S rib 98.9 5.2E-09 1.1E-13 114.0 12.6 98 255-355 230-340 (378)
82 PRK14121 tRNA (guanine-N(7)-)- 98.9 4.9E-09 1.1E-13 114.2 12.0 101 254-356 123-236 (390)
83 TIGR03438 probable methyltrans 98.9 7E-09 1.5E-13 109.8 12.8 106 254-360 64-182 (301)
84 PF13659 Methyltransf_26: Meth 98.9 2.6E-09 5.6E-14 95.9 8.0 100 255-356 2-116 (117)
85 PRK00517 prmA ribosomal protei 98.9 5.7E-09 1.2E-13 107.5 10.9 94 253-358 119-216 (250)
86 cd02440 AdoMet_MTases S-adenos 98.9 8.4E-09 1.8E-13 87.1 10.0 96 256-354 1-103 (107)
87 PRK04266 fibrillarin; Provisio 98.9 8.4E-09 1.8E-13 105.1 11.4 99 253-356 72-177 (226)
88 PRK14967 putative methyltransf 98.9 2.2E-08 4.7E-13 101.3 13.7 101 254-357 37-161 (223)
89 PLN02585 magnesium protoporphy 98.9 1.7E-08 3.7E-13 107.6 13.5 94 254-355 145-249 (315)
90 PRK00377 cbiT cobalt-precorrin 98.9 1.9E-08 4.2E-13 99.8 12.6 100 253-356 40-146 (198)
91 COG2813 RsmC 16S RNA G1207 met 98.9 2.6E-08 5.7E-13 104.5 14.1 130 216-356 127-267 (300)
92 PRK07580 Mg-protoporphyrin IX 98.9 1.9E-08 4.2E-13 101.0 12.3 93 253-351 63-162 (230)
93 PTZ00146 fibrillarin; Provisio 98.9 3.6E-08 7.7E-13 103.7 14.3 100 253-356 132-238 (293)
94 KOG3987 Uncharacterized conser 98.8 3.8E-10 8.3E-15 111.6 -0.7 200 212-434 76-279 (288)
95 TIGR03534 RF_mod_PrmC protein- 98.8 4.3E-08 9.3E-13 99.6 14.2 100 254-355 88-217 (251)
96 KOG2361 Predicted methyltransf 98.8 1.2E-08 2.7E-13 103.3 9.8 134 227-366 51-194 (264)
97 TIGR00438 rrmJ cell division p 98.8 2.5E-08 5.4E-13 98.1 11.4 99 253-357 32-148 (188)
98 PRK14968 putative methyltransf 98.8 4.8E-08 1E-12 94.7 13.1 101 253-357 23-150 (188)
99 TIGR01177 conserved hypothetic 98.8 4.1E-08 8.9E-13 105.2 13.6 102 254-358 183-297 (329)
100 COG2264 PrmA Ribosomal protein 98.8 1.6E-08 3.5E-13 106.5 10.0 98 253-358 162-266 (300)
101 KOG2940 Predicted methyltransf 98.8 8.6E-09 1.9E-13 103.6 6.4 110 254-366 73-185 (325)
102 PRK07402 precorrin-6B methylas 98.8 6.7E-08 1.5E-12 95.6 12.1 99 253-357 40-144 (196)
103 PRK00312 pcm protein-L-isoaspa 98.7 9.7E-08 2.1E-12 95.6 13.0 94 253-356 78-176 (212)
104 TIGR03533 L3_gln_methyl protei 98.7 1.5E-07 3.3E-12 99.0 13.8 101 254-356 122-252 (284)
105 PF06325 PrmA: Ribosomal prote 98.7 3.5E-08 7.5E-13 104.3 8.8 98 253-358 161-262 (295)
106 PRK10901 16S rRNA methyltransf 98.7 7.2E-08 1.6E-12 106.9 11.6 105 253-358 244-375 (427)
107 PRK13256 thiopurine S-methyltr 98.7 2E-07 4.2E-12 95.1 12.9 100 254-356 44-164 (226)
108 TIGR00563 rsmB ribosomal RNA s 98.7 1.4E-07 3E-12 104.6 12.8 106 253-359 238-372 (426)
109 PRK13943 protein-L-isoaspartat 98.7 1.7E-07 3.7E-12 100.3 12.6 96 254-356 81-181 (322)
110 PRK00811 spermidine synthase; 98.7 2.8E-07 6.1E-12 96.9 13.8 102 253-356 76-192 (283)
111 KOG1271 Methyltransferases [Ge 98.7 1.2E-07 2.7E-12 92.6 9.8 104 254-358 68-184 (227)
112 PRK14901 16S rRNA methyltransf 98.6 2E-07 4.3E-12 103.6 12.7 107 253-359 252-388 (434)
113 PRK09328 N5-glutamine S-adenos 98.6 1.9E-07 4.2E-12 96.4 11.7 101 253-355 108-238 (275)
114 smart00650 rADc Ribosomal RNA 98.6 1.7E-07 3.7E-12 90.7 10.1 95 254-355 14-113 (169)
115 PRK14966 unknown domain/N5-glu 98.6 4.5E-07 9.7E-12 99.8 14.1 101 255-356 253-382 (423)
116 PRK14904 16S rRNA methyltransf 98.6 2E-07 4.2E-12 104.0 11.5 107 253-360 250-382 (445)
117 PF06080 DUF938: Protein of un 98.6 2.9E-07 6.3E-12 92.1 11.1 142 256-399 28-204 (204)
118 PF03291 Pox_MCEL: mRNA cappin 98.6 1.4E-07 3.1E-12 101.3 9.1 103 253-357 62-188 (331)
119 PHA03411 putative methyltransf 98.6 3E-07 6.4E-12 96.1 11.2 99 254-354 65-182 (279)
120 TIGR00536 hemK_fam HemK family 98.6 2.9E-07 6.3E-12 96.7 11.3 100 255-356 116-245 (284)
121 PRK11805 N5-glutamine S-adenos 98.6 2.4E-07 5.1E-12 98.6 10.7 100 255-356 135-264 (307)
122 PRK14903 16S rRNA methyltransf 98.6 2.9E-07 6.3E-12 102.3 11.1 107 253-359 237-370 (431)
123 PF01135 PCMT: Protein-L-isoas 98.6 1.6E-07 3.4E-12 94.8 8.1 111 231-356 58-173 (209)
124 PRK04457 spermidine synthase; 98.6 5.1E-07 1.1E-11 94.0 12.0 104 253-357 66-179 (262)
125 PF05148 Methyltransf_8: Hypot 98.5 4E-07 8.6E-12 91.2 10.5 112 254-391 73-184 (219)
126 TIGR00446 nop2p NOL1/NOP2/sun 98.5 6.2E-07 1.3E-11 93.4 12.1 107 253-359 71-203 (264)
127 COG4123 Predicted O-methyltran 98.5 3.8E-07 8.3E-12 93.9 10.3 103 254-357 45-172 (248)
128 PRK01581 speE spermidine synth 98.5 6.3E-07 1.4E-11 96.9 11.8 102 253-356 150-269 (374)
129 PF00891 Methyltransf_2: O-met 98.5 4.9E-07 1.1E-11 92.2 9.3 101 253-359 100-203 (241)
130 COG2242 CobL Precorrin-6B meth 98.4 1.6E-06 3.5E-11 85.5 11.4 99 252-357 33-137 (187)
131 TIGR00417 speE spermidine synt 98.4 1.3E-06 2.8E-11 91.2 11.5 102 253-356 72-187 (270)
132 PRK14902 16S rRNA methyltransf 98.4 1.6E-06 3.5E-11 96.6 12.7 105 253-358 250-382 (444)
133 PRK03612 spermidine synthase; 98.4 2.4E-06 5.2E-11 97.2 13.2 103 253-357 297-417 (521)
134 PHA03412 putative methyltransf 98.4 1.7E-06 3.7E-11 88.6 10.4 96 254-350 50-158 (241)
135 COG2518 Pcm Protein-L-isoaspar 98.4 2.9E-06 6.3E-11 85.3 11.8 108 231-356 58-170 (209)
136 TIGR03704 PrmC_rel_meth putati 98.4 2E-06 4.3E-11 89.1 10.8 101 255-356 88-217 (251)
137 PRK01544 bifunctional N5-gluta 98.4 1.6E-06 3.5E-11 98.3 11.0 100 254-355 139-269 (506)
138 PLN02366 spermidine synthase 98.4 3.5E-06 7.6E-11 89.8 12.6 102 253-356 91-207 (308)
139 KOG3045 Predicted RNA methylas 98.4 2E-06 4.3E-11 88.3 10.1 110 254-391 181-290 (325)
140 PF05724 TPMT: Thiopurine S-me 98.4 1.7E-06 3.7E-11 87.9 9.7 98 254-354 38-154 (218)
141 PLN02781 Probable caffeoyl-CoA 98.3 3.4E-06 7.4E-11 86.4 11.7 100 253-356 68-179 (234)
142 KOG1975 mRNA cap methyltransfe 98.3 1.3E-06 2.8E-11 92.0 8.6 103 253-358 117-240 (389)
143 PF02390 Methyltransf_4: Putat 98.3 1.7E-06 3.6E-11 86.4 9.0 100 255-356 19-134 (195)
144 COG0220 Predicted S-adenosylme 98.3 1.9E-06 4.1E-11 88.0 8.9 100 255-356 50-165 (227)
145 PF05891 Methyltransf_PK: AdoM 98.3 2.3E-06 5E-11 86.3 9.1 137 253-391 55-200 (218)
146 COG0500 SmtA SAM-dependent met 98.3 8.4E-06 1.8E-10 70.8 11.0 101 257-360 52-160 (257)
147 PF01739 CheR: CheR methyltran 98.3 6.4E-06 1.4E-10 82.4 11.0 103 253-355 31-175 (196)
148 COG2519 GCD14 tRNA(1-methylade 98.3 8.2E-06 1.8E-10 83.9 11.9 99 254-359 95-199 (256)
149 PRK13168 rumA 23S rRNA m(5)U19 98.2 7.8E-06 1.7E-10 91.2 12.5 96 253-356 297-401 (443)
150 PRK11783 rlmL 23S rRNA m(2)G24 98.2 3.8E-06 8.3E-11 98.8 9.1 101 254-356 539-657 (702)
151 COG3963 Phospholipid N-methylt 98.2 1.4E-05 2.9E-10 77.6 10.9 106 253-358 48-159 (194)
152 COG2890 HemK Methylase of poly 98.2 8.3E-06 1.8E-10 85.9 10.1 98 256-356 113-239 (280)
153 KOG2899 Predicted methyltransf 98.1 1.2E-05 2.5E-10 82.1 9.5 101 253-354 58-208 (288)
154 PRK15128 23S rRNA m(5)C1962 me 98.1 8.9E-06 1.9E-10 89.6 9.5 101 254-356 221-340 (396)
155 PRK03522 rumB 23S rRNA methylu 98.1 1.8E-05 3.8E-10 84.5 11.4 98 254-358 174-277 (315)
156 PRK00274 ksgA 16S ribosomal RN 98.1 9.7E-06 2.1E-10 84.8 8.8 70 254-326 43-114 (272)
157 TIGR00478 tly hemolysin TlyA f 98.1 1.9E-05 4.1E-10 80.9 10.6 91 253-355 75-171 (228)
158 PRK10611 chemotaxis methyltran 98.1 3.1E-05 6.7E-10 81.8 11.8 101 255-355 117-262 (287)
159 PF10294 Methyltransf_16: Puta 98.1 2.6E-05 5.7E-10 76.2 10.4 102 253-357 45-158 (173)
160 PF08241 Methyltransf_11: Meth 98.0 1.1E-06 2.4E-11 74.8 -0.1 90 520-620 1-95 (95)
161 PRK14896 ksgA 16S ribosomal RN 98.0 3.7E-05 8.1E-10 79.8 11.0 71 254-330 30-103 (258)
162 TIGR00479 rumA 23S rRNA (uraci 98.0 3.3E-05 7.2E-10 85.7 11.1 96 254-356 293-397 (431)
163 PRK10909 rsmD 16S rRNA m(2)G96 98.0 9.5E-05 2.1E-09 74.2 13.2 99 254-356 54-160 (199)
164 TIGR00755 ksgA dimethyladenosi 97.9 8.3E-05 1.8E-09 76.8 11.8 69 253-326 29-103 (253)
165 PLN02672 methionine S-methyltr 97.9 5.3E-05 1.1E-09 92.1 11.7 101 254-356 119-279 (1082)
166 PLN02476 O-methyltransferase 97.9 5.3E-05 1.1E-09 79.7 10.1 100 253-356 118-229 (278)
167 PF01596 Methyltransf_3: O-met 97.9 3.9E-05 8.5E-10 77.3 8.7 101 253-357 45-157 (205)
168 PRK01544 bifunctional N5-gluta 97.9 4.5E-05 9.8E-10 86.6 9.2 103 252-356 346-463 (506)
169 COG1352 CheR Methylase of chem 97.9 0.00012 2.6E-09 76.7 11.6 103 253-355 96-241 (268)
170 PRK04148 hypothetical protein; 97.8 9.1E-05 2E-09 69.9 9.4 91 254-355 17-109 (134)
171 COG4122 Predicted O-methyltran 97.8 8.7E-05 1.9E-09 75.5 9.7 100 253-356 59-167 (219)
172 COG1041 Predicted DNA modifica 97.8 9.6E-05 2.1E-09 79.4 10.5 115 231-356 183-311 (347)
173 PF08704 GCD14: tRNA methyltra 97.8 9.1E-05 2E-09 76.7 9.8 99 254-358 41-149 (247)
174 TIGR02085 meth_trns_rumB 23S r 97.8 0.00013 2.9E-09 79.8 11.0 96 254-356 234-335 (374)
175 PLN02823 spermine synthase 97.8 0.00019 4.2E-09 77.5 11.9 101 253-355 103-220 (336)
176 KOG1269 SAM-dependent methyltr 97.8 4.2E-05 9.1E-10 83.3 6.8 101 254-357 111-217 (364)
177 PF05185 PRMT5: PRMT5 arginine 97.8 9.9E-05 2.1E-09 82.6 9.8 97 254-352 187-294 (448)
178 PF12147 Methyltransf_20: Puta 97.7 0.00032 7E-09 73.7 12.7 106 253-359 135-253 (311)
179 KOG1661 Protein-L-isoaspartate 97.7 0.00012 2.6E-09 73.4 9.1 96 253-355 82-193 (237)
180 PRK11727 23S rRNA mA1618 methy 97.7 0.00027 5.8E-09 75.9 12.4 97 229-326 90-198 (321)
181 COG2521 Predicted archaeal met 97.7 0.00013 2.8E-09 74.3 8.9 131 253-390 134-275 (287)
182 PF07942 N2227: N2227-like pro 97.7 0.00039 8.4E-09 72.9 12.4 136 253-392 56-242 (270)
183 KOG2904 Predicted methyltransf 97.7 0.0004 8.7E-09 72.2 11.8 120 231-357 131-287 (328)
184 COG2263 Predicted RNA methylas 97.7 0.00023 5E-09 70.5 9.4 69 253-326 45-117 (198)
185 KOG1499 Protein arginine N-met 97.6 0.00012 2.7E-09 78.3 8.0 97 253-352 60-164 (346)
186 PTZ00338 dimethyladenosine tra 97.6 0.00019 4.1E-09 76.2 9.2 72 254-331 37-114 (294)
187 KOG3191 Predicted N6-DNA-methy 97.6 0.00042 9E-09 68.3 10.6 107 253-360 43-173 (209)
188 KOG1331 Predicted methyltransf 97.6 4.8E-05 1E-09 79.4 3.4 99 254-358 46-146 (293)
189 PF01170 UPF0020: Putative RNA 97.6 0.00036 7.9E-09 68.7 9.5 100 254-354 29-150 (179)
190 TIGR00095 RNA methyltransferas 97.6 0.0014 3E-08 65.1 13.5 99 254-356 50-160 (189)
191 PRK11933 yebU rRNA (cytosine-C 97.5 0.00065 1.4E-08 76.5 12.3 108 253-360 113-247 (470)
192 PLN02589 caffeoyl-CoA O-methyl 97.5 0.00025 5.4E-09 73.5 8.1 100 253-356 79-191 (247)
193 PF01728 FtsJ: FtsJ-like methy 97.4 0.00023 5E-09 69.4 6.2 98 253-357 23-141 (181)
194 PRK00536 speE spermidine synth 97.4 0.0016 3.5E-08 68.1 12.2 94 253-358 72-174 (262)
195 PF13489 Methyltransf_23: Meth 97.4 4.7E-05 1E-09 71.3 0.5 94 516-624 23-117 (161)
196 PF09243 Rsm22: Mitochondrial 97.4 0.0021 4.5E-08 67.6 12.8 104 252-359 32-143 (274)
197 PF11968 DUF3321: Putative met 97.4 0.0013 2.9E-08 66.5 10.7 127 255-401 53-194 (219)
198 PF02527 GidB: rRNA small subu 97.4 0.0016 3.5E-08 64.6 11.1 93 256-355 51-148 (184)
199 PRK04338 N(2),N(2)-dimethylgua 97.3 0.0012 2.5E-08 72.7 10.9 96 255-356 59-159 (382)
200 PRK10258 biotin biosynthesis p 97.2 0.00063 1.4E-08 69.7 6.9 97 516-624 43-142 (251)
201 KOG1500 Protein arginine N-met 97.2 0.0012 2.5E-08 70.4 8.6 97 253-353 177-280 (517)
202 PF02475 Met_10: Met-10+ like- 97.2 0.0012 2.6E-08 66.5 8.1 93 253-352 101-199 (200)
203 smart00828 PKS_MT Methyltransf 97.2 0.00034 7.3E-09 70.3 4.2 96 517-623 1-105 (224)
204 PLN02244 tocopherol O-methyltr 97.2 0.00026 5.6E-09 76.5 3.3 95 516-621 119-222 (340)
205 KOG3178 Hydroxyindole-O-methyl 97.1 0.002 4.4E-08 69.3 9.7 101 253-359 177-279 (342)
206 PF01564 Spermine_synth: Sperm 97.1 0.0029 6.3E-08 65.5 10.5 102 253-356 76-192 (246)
207 PLN02233 ubiquinone biosynthes 97.1 0.0004 8.7E-09 72.3 4.0 97 517-621 75-181 (261)
208 TIGR03439 methyl_EasF probable 97.1 0.0046 9.9E-08 66.5 11.8 104 254-357 77-199 (319)
209 COG0421 SpeE Spermidine syntha 97.1 0.0043 9.2E-08 65.6 11.2 102 253-356 76-191 (282)
210 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.1 0.0022 4.7E-08 66.9 8.8 104 253-358 56-202 (256)
211 PRK05031 tRNA (uracil-5-)-meth 97.1 0.0029 6.2E-08 69.1 10.2 94 255-357 208-322 (362)
212 PRK15068 tRNA mo(5)U34 methylt 97.0 0.00042 9.1E-09 74.4 3.6 95 517-622 124-226 (322)
213 KOG2352 Predicted spermine/spe 97.0 0.0041 8.8E-08 69.5 11.1 99 256-356 51-162 (482)
214 COG0030 KsgA Dimethyladenosine 97.0 0.0026 5.7E-08 66.3 9.1 73 254-330 31-107 (259)
215 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.0022 4.7E-08 67.9 8.5 105 253-357 46-185 (311)
216 TIGR02143 trmA_only tRNA (urac 96.9 0.0047 1E-07 67.2 10.6 94 255-357 199-313 (353)
217 PRK11207 tellurite resistance 96.9 0.00039 8.5E-09 69.2 2.0 92 517-619 32-131 (197)
218 TIGR00477 tehB tellurite resis 96.9 0.00041 8.9E-09 69.0 2.0 91 517-618 32-129 (195)
219 PF03602 Cons_hypoth95: Conser 96.9 0.0026 5.7E-08 63.0 7.7 101 253-356 42-154 (183)
220 PRK11036 putative S-adenosyl-L 96.9 0.00036 7.8E-09 72.0 1.5 93 517-621 46-148 (255)
221 KOG3201 Uncharacterized conser 96.9 0.00043 9.4E-09 67.0 1.6 136 254-401 30-176 (201)
222 PRK11760 putative 23S rRNA C24 96.8 0.014 3.1E-07 63.1 12.8 95 253-357 211-307 (357)
223 COG2520 Predicted methyltransf 96.8 0.015 3.3E-07 62.9 12.7 100 254-360 189-294 (341)
224 KOG0820 Ribosomal RNA adenine 96.8 0.0054 1.2E-07 64.0 8.8 69 253-326 58-132 (315)
225 PRK08317 hypothetical protein; 96.8 0.0012 2.6E-08 65.8 3.8 98 517-623 21-125 (241)
226 PRK12335 tellurite resistance 96.7 0.0006 1.3E-08 71.8 1.6 92 518-620 123-221 (287)
227 PRK11088 rrmA 23S rRNA methylt 96.7 0.0025 5.4E-08 66.5 6.1 91 517-621 87-180 (272)
228 COG1092 Predicted SAM-dependen 96.7 0.0076 1.7E-07 66.5 10.0 103 254-358 218-339 (393)
229 PRK14103 trans-aconitate 2-met 96.7 0.0014 3.1E-08 67.5 4.2 94 517-621 31-125 (255)
230 TIGR02072 BioC biotin biosynth 96.6 0.0013 2.8E-08 65.7 3.1 98 517-624 36-137 (240)
231 PRK11705 cyclopropane fatty ac 96.6 0.0013 2.8E-08 72.4 3.2 97 517-623 169-268 (383)
232 PF02353 CMAS: Mycolic acid cy 96.6 0.00049 1.1E-08 72.3 -0.1 101 517-625 64-169 (273)
233 PTZ00098 phosphoethanolamine N 96.6 0.0013 2.8E-08 68.5 3.0 98 517-623 54-157 (263)
234 TIGR00452 methyltransferase, p 96.6 0.002 4.3E-08 69.2 4.1 97 517-621 123-224 (314)
235 TIGR02987 met_A_Alw26 type II 96.5 0.02 4.4E-07 65.4 12.3 73 254-326 32-121 (524)
236 PRK00050 16S rRNA m(4)C1402 me 96.5 0.0053 1.1E-07 65.4 6.9 73 254-326 20-99 (296)
237 PF12847 Methyltransf_18: Meth 96.5 0.00048 1E-08 61.0 -0.8 98 518-622 4-111 (112)
238 TIGR02752 MenG_heptapren 2-hep 96.5 0.0019 4.2E-08 65.1 3.3 97 517-621 47-150 (231)
239 PF08123 DOT1: Histone methyla 96.5 0.0074 1.6E-07 61.0 7.3 99 253-354 42-157 (205)
240 KOG3420 Predicted RNA methylas 96.5 0.0071 1.5E-07 57.8 6.6 72 253-326 48-123 (185)
241 KOG1709 Guanidinoacetate methy 96.5 0.02 4.4E-07 58.0 10.2 112 231-354 88-205 (271)
242 PF00398 RrnaAD: Ribosomal RNA 96.5 0.02 4.4E-07 59.6 10.7 103 230-347 15-123 (262)
243 PF10672 Methyltrans_SAM: S-ad 96.4 0.0066 1.4E-07 64.3 7.0 103 254-358 124-241 (286)
244 COG0357 GidB Predicted S-adeno 96.4 0.019 4.1E-07 58.5 9.7 94 254-353 68-166 (215)
245 TIGR00406 prmA ribosomal prote 96.4 0.002 4.4E-08 68.0 2.6 95 517-624 161-261 (288)
246 TIGR00308 TRM1 tRNA(guanine-26 96.3 0.011 2.3E-07 65.0 8.3 97 255-356 46-148 (374)
247 PF08242 Methyltransf_12: Meth 96.3 0.0028 6E-08 55.3 2.8 90 520-618 1-99 (99)
248 PLN02396 hexaprenyldihydroxybe 96.3 0.0032 6.9E-08 67.8 3.8 97 517-624 133-237 (322)
249 COG1189 Predicted rRNA methyla 96.3 0.033 7.2E-07 57.3 10.7 129 253-388 79-220 (245)
250 COG2226 UbiE Methylase involve 96.3 0.0032 6.9E-08 65.0 3.4 100 517-625 53-159 (238)
251 COG0742 N6-adenine-specific me 96.2 0.056 1.2E-06 53.9 11.8 102 253-357 43-156 (187)
252 KOG1663 O-methyltransferase [S 96.2 0.05 1.1E-06 55.7 11.4 99 253-355 73-183 (237)
253 PRK01683 trans-aconitate 2-met 96.1 0.0064 1.4E-07 62.5 4.7 94 516-621 32-129 (258)
254 PTZ00146 fibrillarin; Provisio 96.1 0.0053 1.2E-07 65.1 4.1 105 507-621 126-236 (293)
255 COG0144 Sun tRNA and rRNA cyto 96.1 0.036 7.8E-07 60.5 10.7 107 253-359 156-292 (355)
256 TIGR01934 MenG_MenH_UbiE ubiqu 96.1 0.0056 1.2E-07 60.7 4.0 98 517-623 41-144 (223)
257 COG0293 FtsJ 23S rRNA methylas 96.1 0.03 6.5E-07 56.6 9.1 99 253-357 45-161 (205)
258 COG4627 Uncharacterized protei 96.0 0.0019 4.1E-08 62.2 0.4 58 303-360 33-91 (185)
259 PRK11783 rlmL 23S rRNA m(2)G24 96.0 0.042 9.2E-07 65.1 11.4 105 254-358 191-350 (702)
260 COG2265 TrmA SAM-dependent met 96.0 0.041 9E-07 61.6 10.6 98 253-357 293-398 (432)
261 PF01269 Fibrillarin: Fibrilla 96.0 0.053 1.2E-06 55.4 10.4 100 252-356 72-179 (229)
262 PF13578 Methyltransf_24: Meth 96.0 0.0024 5.2E-08 56.7 0.6 96 258-355 1-105 (106)
263 PRK05785 hypothetical protein; 95.9 0.0071 1.5E-07 61.7 3.8 88 517-616 53-141 (226)
264 TIGR01983 UbiG ubiquinone bios 95.8 0.0051 1.1E-07 61.6 2.4 126 472-623 17-150 (224)
265 PRK00517 prmA ribosomal protei 95.8 0.0057 1.2E-07 63.2 2.8 91 517-625 121-216 (250)
266 PRK00121 trmB tRNA (guanine-N( 95.8 0.0051 1.1E-07 61.6 2.1 103 516-622 41-156 (202)
267 PF01209 Ubie_methyltran: ubiE 95.8 0.0048 1E-07 63.4 2.0 95 518-620 50-151 (233)
268 TIGR00138 gidB 16S rRNA methyl 95.7 0.0075 1.6E-07 59.5 3.1 90 517-621 44-141 (181)
269 PF03059 NAS: Nicotianamine sy 95.7 0.077 1.7E-06 56.0 10.7 102 253-355 120-230 (276)
270 PRK00107 gidB 16S rRNA methylt 95.7 0.0098 2.1E-07 59.2 3.8 91 517-621 47-144 (187)
271 smart00138 MeTrc Methyltransfe 95.6 0.014 3E-07 61.0 4.9 136 469-625 68-245 (264)
272 PF05401 NodS: Nodulation prot 95.3 0.0051 1.1E-07 61.6 0.4 100 513-621 41-145 (201)
273 COG3897 Predicted methyltransf 95.3 0.05 1.1E-06 54.6 7.3 101 253-360 79-184 (218)
274 TIGR00537 hemK_rel_arch HemK-r 95.3 0.0094 2E-07 58.1 2.2 97 517-621 21-139 (179)
275 PRK05134 bifunctional 3-demeth 95.3 0.0093 2E-07 60.3 2.3 95 518-623 51-152 (233)
276 PF13679 Methyltransf_32: Meth 95.3 0.042 9.2E-07 51.8 6.5 97 253-359 25-135 (141)
277 TIGR00740 methyltransferase, p 95.3 0.0092 2E-07 60.9 2.0 97 517-622 55-161 (239)
278 PRK08287 cobalt-precorrin-6Y C 95.2 0.018 3.9E-07 56.5 3.9 94 517-623 33-132 (187)
279 PF05958 tRNA_U5-meth_tr: tRNA 95.1 0.061 1.3E-06 58.6 7.9 53 255-310 198-255 (352)
280 PRK15451 tRNA cmo(5)U34 methyl 95.1 0.0099 2.1E-07 61.2 1.7 98 517-622 58-164 (247)
281 PLN02490 MPBQ/MSBQ methyltrans 95.1 0.016 3.4E-07 63.0 3.3 96 517-621 115-214 (340)
282 PRK11873 arsM arsenite S-adeno 95.1 0.023 5E-07 59.0 4.3 96 517-621 79-182 (272)
283 TIGR02469 CbiT precorrin-6Y C5 95.1 0.023 5E-07 50.8 3.7 95 517-623 21-123 (124)
284 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.0 0.033 7.2E-07 58.9 5.3 105 253-357 85-221 (283)
285 TIGR00438 rrmJ cell division p 95.0 0.015 3.3E-07 57.1 2.5 97 517-621 34-145 (188)
286 PF04816 DUF633: Family of unk 94.9 0.26 5.7E-06 49.8 11.2 116 257-391 1-123 (205)
287 COG0116 Predicted N6-adenine-s 94.9 0.24 5.3E-06 54.4 11.6 127 226-356 168-345 (381)
288 KOG2798 Putative trehalase [Ca 94.8 0.14 3.1E-06 54.7 9.3 135 253-391 150-336 (369)
289 PRK13944 protein-L-isoaspartat 94.7 0.019 4E-07 57.6 2.4 89 517-620 74-171 (205)
290 TIGR01444 fkbM_fam methyltrans 94.7 0.045 9.7E-07 50.8 4.9 41 256-297 1-41 (143)
291 PF09445 Methyltransf_15: RNA 94.7 0.04 8.6E-07 53.8 4.5 67 255-324 1-76 (163)
292 TIGR00080 pimt protein-L-isoas 94.6 0.023 4.9E-07 57.2 2.9 89 517-621 79-176 (215)
293 PF04672 Methyltransf_19: S-ad 94.6 0.16 3.5E-06 53.3 9.1 106 253-359 68-194 (267)
294 KOG2915 tRNA(1-methyladenosine 94.6 0.28 6E-06 51.6 10.5 108 236-357 96-212 (314)
295 PLN02668 indole-3-acetate carb 94.6 0.14 3.1E-06 56.5 8.9 46 313-359 158-241 (386)
296 PRK15001 SAM-dependent 23S rib 94.4 0.45 9.7E-06 52.5 12.5 91 256-357 47-144 (378)
297 PRK00216 ubiE ubiquinone/menaq 94.4 0.043 9.4E-07 54.9 4.3 96 517-621 53-157 (239)
298 cd02440 AdoMet_MTases S-adenos 94.3 0.022 4.7E-07 47.5 1.5 95 518-621 1-103 (107)
299 COG4798 Predicted methyltransf 94.2 0.19 4.1E-06 50.5 8.1 106 253-360 48-171 (238)
300 COG4262 Predicted spermidine s 94.2 0.22 4.7E-06 54.3 9.2 104 253-358 289-410 (508)
301 PRK14968 putative methyltransf 94.2 0.032 7E-07 53.9 2.8 98 517-621 25-147 (188)
302 TIGR02716 C20_methyl_CrtF C-20 94.1 0.038 8.3E-07 58.6 3.4 100 514-621 148-253 (306)
303 TIGR02081 metW methionine bios 94.0 0.042 9.1E-07 54.3 3.0 87 518-614 16-104 (194)
304 KOG1122 tRNA and rRNA cytosine 93.9 0.31 6.7E-06 53.9 9.7 110 249-359 237-375 (460)
305 PRK06922 hypothetical protein; 93.9 0.028 6.2E-07 65.4 1.9 102 517-621 420-536 (677)
306 PF13847 Methyltransf_31: Meth 93.7 0.03 6.6E-07 52.9 1.5 98 517-624 5-112 (152)
307 PRK11188 rrmJ 23S rRNA methylt 93.7 0.095 2.1E-06 52.9 5.1 93 517-621 53-164 (209)
308 PF00891 Methyltransf_2: O-met 93.7 0.02 4.3E-07 58.4 0.2 98 512-620 97-197 (241)
309 PF03848 TehB: Tellurite resis 93.5 0.022 4.7E-07 57.1 0.1 92 518-620 33-131 (192)
310 PF07021 MetW: Methionine bios 93.5 0.044 9.6E-07 54.8 2.2 99 517-627 15-114 (193)
311 PRK00377 cbiT cobalt-precorrin 93.5 0.04 8.8E-07 54.7 2.0 127 467-622 8-145 (198)
312 PRK07580 Mg-protoporphyrin IX 93.3 0.043 9.4E-07 55.0 1.9 100 516-624 64-168 (230)
313 COG2230 Cfa Cyclopropane fatty 93.2 0.069 1.5E-06 56.5 3.3 99 518-627 75-181 (283)
314 PRK06202 hypothetical protein; 93.2 0.056 1.2E-06 54.9 2.6 100 516-620 61-165 (232)
315 TIGR02021 BchM-ChlM magnesium 93.2 0.041 8.8E-07 55.3 1.5 100 516-624 56-160 (219)
316 PRK04266 fibrillarin; Provisio 93.1 0.07 1.5E-06 54.7 3.1 93 518-621 75-175 (226)
317 PRK09489 rsmC 16S ribosomal RN 92.9 0.073 1.6E-06 57.8 3.1 98 518-620 199-301 (342)
318 COG4076 Predicted RNA methylas 92.8 0.29 6.4E-06 48.9 6.8 94 255-353 34-133 (252)
319 PRK14902 16S rRNA methyltransf 92.8 0.095 2.1E-06 58.7 3.8 105 517-623 252-380 (444)
320 KOG1540 Ubiquinone biosynthesi 92.7 0.12 2.7E-06 53.8 4.2 94 517-619 102-211 (296)
321 TIGR00091 tRNA (guanine-N(7)-) 92.6 0.079 1.7E-06 52.5 2.6 101 517-621 18-131 (194)
322 COG5459 Predicted rRNA methyla 92.5 0.52 1.1E-05 51.2 8.7 107 253-359 113-229 (484)
323 PRK13942 protein-L-isoaspartat 92.5 0.096 2.1E-06 52.8 3.1 88 517-620 78-174 (212)
324 KOG2187 tRNA uracil-5-methyltr 92.1 0.18 3.9E-06 57.0 4.8 53 255-310 385-442 (534)
325 PF13649 Methyltransf_25: Meth 92.0 0.0086 1.9E-07 52.6 -4.6 94 519-616 1-101 (101)
326 KOG3115 Methyltransferase-like 91.8 0.27 5.8E-06 49.8 5.2 40 255-295 62-101 (249)
327 COG1064 AdhP Zn-dependent alco 91.8 0.65 1.4E-05 50.5 8.5 95 253-357 166-261 (339)
328 PF06325 PrmA: Ribosomal prote 91.7 0.051 1.1E-06 57.9 0.0 97 517-625 163-262 (295)
329 TIGR00563 rsmB ribosomal RNA s 91.7 0.18 3.9E-06 56.3 4.3 101 517-621 240-367 (426)
330 PF06962 rRNA_methylase: Putat 91.6 0.87 1.9E-05 43.5 8.1 96 280-382 1-112 (140)
331 PRK11805 N5-glutamine S-adenos 91.5 0.15 3.1E-06 54.7 3.3 100 517-621 135-262 (307)
332 PRK14967 putative methyltransf 91.5 0.11 2.4E-06 52.5 2.2 99 517-621 38-158 (223)
333 PF05175 MTS: Methyltransferas 91.5 0.12 2.7E-06 50.1 2.4 116 516-637 32-157 (170)
334 PF04989 CmcI: Cephalosporin h 91.4 0.38 8.3E-06 48.8 5.9 103 253-357 32-149 (206)
335 TIGR03587 Pse_Me-ase pseudamin 91.1 0.27 5.8E-06 49.5 4.6 94 516-620 44-140 (204)
336 PRK00312 pcm protein-L-isoaspa 90.9 0.18 4E-06 50.4 3.1 86 517-622 80-175 (212)
337 COG4976 Predicted methyltransf 90.5 0.075 1.6E-06 54.5 -0.1 104 513-627 123-230 (287)
338 PRK09328 N5-glutamine S-adenos 90.2 0.24 5.2E-06 51.2 3.4 100 517-621 110-237 (275)
339 COG2227 UbiG 2-polyprenyl-3-me 90.1 0.21 4.6E-06 51.6 2.7 99 518-627 62-166 (243)
340 TIGR03533 L3_gln_methyl protei 90.0 0.23 5E-06 52.5 3.0 100 517-621 123-250 (284)
341 TIGR03534 RF_mod_PrmC protein- 89.9 0.2 4.3E-06 50.9 2.4 100 517-621 89-216 (251)
342 cd04789 HTH_Cfa Helix-Turn-Hel 89.7 0.016 3.5E-07 52.0 -5.1 59 94-162 32-90 (102)
343 TIGR00446 nop2p NOL1/NOP2/sun 89.7 0.33 7.1E-06 50.7 3.8 106 518-629 74-203 (264)
344 PRK10901 16S rRNA methyltransf 89.5 0.39 8.4E-06 53.7 4.5 102 518-622 247-372 (427)
345 PRK14903 16S rRNA methyltransf 89.3 0.27 5.9E-06 55.1 3.1 104 518-624 240-368 (431)
346 PRK14121 tRNA (guanine-N(7)-)- 89.3 0.24 5.1E-06 54.9 2.6 99 517-621 124-234 (390)
347 PF05219 DREV: DREV methyltran 89.3 0.36 7.8E-06 50.5 3.7 91 515-621 94-187 (265)
348 cd08283 FDH_like_1 Glutathione 89.3 2.1 4.5E-05 46.7 9.9 102 253-356 184-307 (386)
349 PRK14901 16S rRNA methyltransf 89.2 0.29 6.2E-06 54.8 3.2 101 518-621 255-383 (434)
350 TIGR03438 probable methyltrans 89.2 0.19 4.1E-06 53.5 1.7 98 517-621 65-176 (301)
351 PRK13699 putative methylase; P 89.2 0.97 2.1E-05 46.4 6.8 81 304-401 5-101 (227)
352 PF07091 FmrO: Ribosomal RNA m 89.1 1.9 4.2E-05 45.0 8.8 128 253-387 105-239 (251)
353 PRK14904 16S rRNA methyltransf 89.1 0.28 6.1E-06 55.1 3.0 103 517-628 252-380 (445)
354 KOG2793 Putative N2,N2-dimethy 88.7 3.1 6.8E-05 43.4 10.1 103 254-359 87-203 (248)
355 cd08254 hydroxyacyl_CoA_DH 6-h 88.5 2.5 5.4E-05 44.2 9.5 94 253-356 165-264 (338)
356 PF05971 Methyltransf_10: Prot 88.4 1.6 3.5E-05 46.7 7.9 96 229-328 81-188 (299)
357 COG2264 PrmA Ribosomal protein 88.0 0.31 6.6E-06 52.1 2.3 95 515-625 162-266 (300)
358 PF03492 Methyltransf_7: SAM d 88.0 1.3 2.7E-05 48.2 7.1 78 253-331 16-120 (334)
359 PRK09880 L-idonate 5-dehydroge 87.8 2.5 5.4E-05 45.2 9.1 95 254-356 170-267 (343)
360 PRK04457 spermidine synthase; 87.5 0.38 8.2E-06 50.3 2.6 101 516-621 67-176 (262)
361 TIGR01177 conserved hypothetic 87.5 0.3 6.6E-06 52.5 1.9 98 518-621 185-293 (329)
362 PF08003 Methyltransf_9: Prote 87.2 0.61 1.3E-05 49.9 3.9 96 516-620 116-217 (315)
363 PRK07402 precorrin-6B methylas 87.1 0.55 1.2E-05 46.4 3.4 96 517-625 42-145 (196)
364 KOG0822 Protein kinase inhibit 87.0 1.9 4.2E-05 49.2 7.7 100 254-354 368-477 (649)
365 KOG3010 Methyltransferase [Gen 86.8 0.37 8E-06 49.9 2.0 89 515-616 33-130 (261)
366 PF01728 FtsJ: FtsJ-like methy 86.8 0.27 5.8E-06 47.9 0.9 109 513-623 21-140 (181)
367 TIGR00536 hemK_fam HemK family 86.2 0.53 1.2E-05 49.6 2.8 100 517-621 116-243 (284)
368 TIGR00006 S-adenosyl-methyltra 85.5 3.3 7.2E-05 44.5 8.4 85 232-325 7-100 (305)
369 PF13659 Methyltransf_26: Meth 85.5 0.13 2.9E-06 45.7 -1.8 97 518-620 3-113 (117)
370 cd04790 HTH_Cfa-like_unk Helix 85.4 0.15 3.3E-06 50.1 -1.6 60 94-163 33-94 (172)
371 PF06859 Bin3: Bicoid-interact 85.3 0.44 9.4E-06 43.7 1.4 37 317-354 1-43 (110)
372 TIGR03840 TMPT_Se_Te thiopurin 85.3 0.65 1.4E-05 47.1 2.9 32 517-548 36-67 (213)
373 cd04775 HTH_Cfa-like Helix-Tur 85.1 0.051 1.1E-06 48.8 -4.7 59 93-161 31-89 (102)
374 KOG2920 Predicted methyltransf 84.9 0.69 1.5E-05 48.9 2.9 100 253-355 116-234 (282)
375 KOG4589 Cell division protein 84.6 7.2 0.00016 39.4 9.6 101 253-360 69-189 (232)
376 COG1889 NOP1 Fibrillarin-like 84.3 9.9 0.00021 38.8 10.5 98 252-356 75-181 (231)
377 KOG1562 Spermidine synthase [A 84.0 2.5 5.5E-05 45.1 6.6 102 253-356 121-237 (337)
378 cd00315 Cyt_C5_DNA_methylase C 83.7 3 6.5E-05 43.9 7.1 67 256-325 2-70 (275)
379 PF00107 ADH_zinc_N: Zinc-bind 83.7 2 4.3E-05 38.9 5.1 86 263-358 1-92 (130)
380 PF05148 Methyltransf_8: Hypot 83.5 0.85 1.9E-05 46.5 2.7 125 471-622 31-158 (219)
381 COG0500 SmtA SAM-dependent met 83.1 2 4.4E-05 36.8 4.7 94 519-624 52-157 (257)
382 KOG3045 Predicted RNA methylas 83.1 1.4 3.1E-05 46.2 4.2 85 517-624 182-266 (325)
383 PRK09424 pntA NAD(P) transhydr 82.6 7.5 0.00016 44.7 10.2 101 253-356 164-286 (509)
384 TIGR03704 PrmC_rel_meth putati 82.6 1.1 2.5E-05 46.4 3.4 103 517-622 88-216 (251)
385 TIGR00417 speE spermidine synt 82.2 1.2 2.6E-05 46.6 3.4 101 516-621 73-185 (270)
386 PF02390 Methyltransf_4: Putat 81.8 0.58 1.2E-05 46.9 0.8 98 518-620 20-131 (195)
387 PF10354 DUF2431: Domain of un 81.7 11 0.00023 37.0 9.5 119 259-388 2-148 (166)
388 COG0286 HsdM Type I restrictio 81.6 11 0.00024 43.1 11.1 105 254-358 187-329 (489)
389 COG2384 Predicted SAM-dependen 81.6 21 0.00045 36.8 11.8 117 255-390 18-141 (226)
390 cd08245 CAD Cinnamyl alcohol d 81.5 8 0.00017 40.5 9.4 95 253-356 162-257 (330)
391 PRK11524 putative methyltransf 81.1 1.4 3E-05 46.5 3.5 52 303-354 11-79 (284)
392 KOG2730 Methylase [General fun 80.9 1.7 3.7E-05 44.7 3.7 90 254-349 95-196 (263)
393 PF03269 DUF268: Caenorhabditi 80.8 1.1 2.4E-05 43.8 2.4 45 315-359 61-115 (177)
394 PF02005 TRM: N2,N2-dimethylgu 80.5 8.9 0.00019 42.5 9.5 99 254-357 50-156 (377)
395 KOG2198 tRNA cytosine-5-methyl 80.4 6.4 0.00014 43.3 8.2 109 252-360 154-301 (375)
396 PHA01634 hypothetical protein 80.4 3.4 7.5E-05 39.1 5.3 68 253-323 28-98 (156)
397 TIGR02822 adh_fam_2 zinc-bindi 80.3 10 0.00022 40.5 9.8 90 253-356 165-255 (329)
398 KOG0024 Sorbitol dehydrogenase 80.0 10 0.00022 41.3 9.3 100 253-359 169-277 (354)
399 COG3510 CmcI Cephalosporin hyd 79.9 5.5 0.00012 40.3 6.8 107 253-360 69-185 (237)
400 cd05188 MDR Medium chain reduc 79.9 10 0.00023 37.8 9.2 93 253-357 134-234 (271)
401 PLN02232 ubiquinone biosynthes 79.4 1.2 2.6E-05 42.8 2.1 49 570-624 35-83 (160)
402 PF01861 DUF43: Protein of unk 79.1 32 0.0007 35.9 12.4 123 253-388 44-174 (243)
403 PRK13255 thiopurine S-methyltr 79.0 1.1 2.5E-05 45.5 1.9 91 518-617 40-150 (218)
404 cd08232 idonate-5-DH L-idonate 79.0 9.9 0.00022 40.1 9.1 93 253-355 165-262 (339)
405 cd04782 HTH_BltR Helix-Turn-He 78.8 0.32 6.9E-06 43.2 -1.9 33 95-130 33-65 (97)
406 PRK13943 protein-L-isoaspartat 78.8 1.6 3.4E-05 47.2 3.0 19 517-535 82-100 (322)
407 PRK10742 putative methyltransf 78.8 8.5 0.00018 40.3 8.2 83 235-326 76-173 (250)
408 PRK01581 speE spermidine synth 78.6 1.5 3.3E-05 48.2 2.8 103 515-621 150-267 (374)
409 PRK13749 transcriptional regul 78.5 1.1 2.3E-05 41.8 1.4 33 95-130 36-68 (121)
410 COG0789 SoxR Predicted transcr 78.4 1.1 2.4E-05 40.9 1.4 32 96-130 34-65 (124)
411 PLN02781 Probable caffeoyl-CoA 77.8 0.72 1.6E-05 47.4 0.0 34 578-620 143-176 (234)
412 cd04787 HTH_HMRTR_unk Helix-Tu 76.9 1.2 2.6E-05 41.8 1.2 35 93-130 31-65 (133)
413 cd08234 threonine_DH_like L-th 76.8 15 0.00032 38.6 9.6 94 253-356 159-258 (334)
414 TIGR00478 tly hemolysin TlyA f 76.5 1.7 3.7E-05 44.8 2.3 20 516-535 76-95 (228)
415 TIGR02054 MerD mercuric resist 76.3 1.5 3.3E-05 40.7 1.7 33 94-129 35-67 (120)
416 PRK00811 spermidine synthase; 75.9 2.6 5.6E-05 44.6 3.5 101 516-621 77-190 (283)
417 TIGR00561 pntA NAD(P) transhyd 75.5 8 0.00017 44.5 7.5 95 253-352 163-281 (511)
418 cd04768 HTH_BmrR-like Helix-Tu 75.2 1.5 3.2E-05 38.9 1.3 33 95-130 33-65 (96)
419 KOG1501 Arginine N-methyltrans 74.6 4.9 0.00011 45.1 5.3 65 228-296 43-107 (636)
420 cd01111 HTH_MerD Helix-Turn-He 74.5 1.9 4.1E-05 39.1 1.8 34 93-129 31-64 (107)
421 cd08230 glucose_DH Glucose deh 74.5 13 0.00028 39.9 8.5 93 253-356 172-270 (355)
422 cd04784 HTH_CadR-PbrR Helix-Tu 74.0 1.6 3.5E-05 40.5 1.3 32 95-129 33-64 (127)
423 cd08237 ribitol-5-phosphate_DH 73.6 15 0.00032 39.4 8.7 94 253-356 163-257 (341)
424 KOG1099 SAM-dependent methyltr 73.6 6.2 0.00013 40.9 5.4 97 254-356 42-164 (294)
425 TIGR02044 CueR Cu(I)-responsiv 73.3 2.1 4.6E-05 39.8 1.9 28 93-120 31-58 (127)
426 PF10294 Methyltransf_16: Puta 73.2 1.4 3E-05 43.1 0.6 98 515-623 45-157 (173)
427 TIGR03451 mycoS_dep_FDH mycoth 73.1 18 0.0004 38.8 9.4 95 253-356 176-277 (358)
428 cd01282 HTH_MerR-like_sg3 Heli 72.3 1.8 4E-05 39.4 1.2 34 93-129 30-63 (112)
429 PRK10227 DNA-binding transcrip 72.2 2.1 4.7E-05 40.4 1.7 28 93-120 31-58 (135)
430 cd01105 HTH_GlnR-like Helix-Tu 71.5 2 4.3E-05 37.4 1.2 32 96-130 35-66 (88)
431 TIGR02047 CadR-PbrR Cd(II)/Pb( 71.5 1.9 4.1E-05 40.2 1.2 32 95-129 33-64 (127)
432 PF01555 N6_N4_Mtase: DNA meth 71.4 11 0.00023 37.0 6.6 41 253-296 191-231 (231)
433 cd01110 HTH_SoxR Helix-Turn-He 71.1 2.1 4.5E-05 40.7 1.3 28 93-120 31-58 (139)
434 KOG1596 Fibrillarin and relate 71.1 23 0.00049 37.2 8.8 100 253-358 156-264 (317)
435 cd01108 HTH_CueR Helix-Turn-He 71.0 2.5 5.4E-05 39.3 1.8 27 94-120 32-58 (127)
436 TIGR02825 B4_12hDH leukotriene 70.9 35 0.00077 35.8 10.8 93 253-355 138-237 (325)
437 cd01107 HTH_BmrR Helix-Turn-He 70.8 1.1 2.3E-05 40.6 -0.6 33 95-130 34-66 (108)
438 cd08239 THR_DH_like L-threonin 70.7 17 0.00037 38.4 8.3 94 254-356 164-263 (339)
439 KOG2539 Mitochondrial/chloropl 70.5 16 0.00035 41.4 8.2 106 253-359 200-319 (491)
440 cd04788 HTH_NolA-AlbR Helix-Tu 70.2 2.7 5.8E-05 37.2 1.8 34 94-130 32-65 (96)
441 TIGR03366 HpnZ_proposed putati 69.9 18 0.00038 37.5 8.1 95 253-356 120-219 (280)
442 cd08281 liver_ADH_like1 Zinc-d 69.5 17 0.00037 39.3 8.2 93 254-356 192-291 (371)
443 cd04785 HTH_CadR-PbrR-like Hel 69.5 2.8 6.2E-05 38.9 1.8 34 93-129 31-64 (126)
444 PRK13752 putative transcriptio 69.3 2.3 5E-05 40.7 1.2 34 94-130 39-72 (144)
445 COG3129 Predicted SAM-dependen 69.1 11 0.00023 39.3 6.0 97 227-326 54-162 (292)
446 PLN02585 magnesium protoporphy 69.1 3.7 8E-05 44.3 2.8 100 517-626 146-254 (315)
447 cd08255 2-desacetyl-2-hydroxye 68.8 26 0.00056 35.7 9.0 93 253-356 97-191 (277)
448 cd08261 Zn_ADH7 Alcohol dehydr 68.6 29 0.00062 36.6 9.5 94 253-356 159-259 (337)
449 cd04763 HTH_MlrA-like Helix-Tu 68.2 2.3 5E-05 34.9 0.8 33 93-128 31-63 (68)
450 COG4301 Uncharacterized conser 67.9 67 0.0015 34.0 11.4 105 254-359 79-197 (321)
451 PF07757 AdoMet_MTase: Predict 67.1 4.9 0.00011 36.9 2.7 31 253-286 58-88 (112)
452 TIGR02043 ZntR Zn(II)-responsi 67.1 2.8 6.1E-05 39.3 1.3 33 94-129 33-65 (131)
453 TIGR01202 bchC 2-desacetyl-2-h 67.0 25 0.00053 37.1 8.6 86 254-356 145-232 (308)
454 cd04786 HTH_MerR-like_sg7 Heli 66.7 2.8 6.2E-05 39.4 1.2 33 95-130 33-65 (131)
455 PRK09514 zntR zinc-responsive 66.3 3.6 7.7E-05 39.1 1.8 34 93-129 32-65 (140)
456 PRK01747 mnmC bifunctional tRN 65.9 17 0.00037 42.9 7.8 99 254-354 58-205 (662)
457 cd04770 HTH_HMRTR Helix-Turn-H 65.8 3.6 7.8E-05 37.8 1.7 32 95-129 33-64 (123)
458 cd04773 HTH_TioE_rpt2 Second H 65.8 3.1 6.6E-05 37.7 1.2 27 94-120 32-58 (108)
459 COG1867 TRM1 N2,N2-dimethylgua 65.7 20 0.00044 39.6 7.6 99 254-358 53-157 (380)
460 PLN03154 putative allyl alcoho 65.2 36 0.00078 36.6 9.5 94 253-356 158-259 (348)
461 cd01109 HTH_YyaN Helix-Turn-He 65.0 3.7 8.1E-05 37.2 1.6 34 93-129 31-64 (113)
462 PRK11524 putative methyltransf 64.6 19 0.00041 38.0 7.0 42 253-297 208-249 (284)
463 cd04772 HTH_TioE_rpt1 First He 64.4 4.2 9.1E-05 36.3 1.8 25 94-118 32-56 (99)
464 TIGR01950 SoxR redox-sensitive 64.3 3.4 7.3E-05 39.5 1.2 27 94-120 32-58 (142)
465 PF01795 Methyltransf_5: MraW 64.0 25 0.00054 38.0 7.9 57 232-297 7-63 (310)
466 TIGR03201 dearomat_had 6-hydro 63.9 31 0.00067 36.9 8.7 95 253-356 166-273 (349)
467 PF13411 MerR_1: MerR HTH fami 63.9 3 6.6E-05 33.9 0.7 28 93-120 30-57 (69)
468 TIGR02051 MerR Hg(II)-responsi 63.8 3.5 7.6E-05 38.2 1.2 33 94-129 31-63 (124)
469 PLN02366 spermidine synthase 63.8 6.1 0.00013 42.5 3.2 101 516-620 92-204 (308)
470 PRK14966 unknown domain/N5-glu 63.2 4.7 0.0001 45.2 2.3 100 518-620 254-379 (423)
471 cd04764 HTH_MlrA-like_sg1 Heli 62.5 4 8.6E-05 33.3 1.2 33 93-128 30-62 (67)
472 cd04781 HTH_MerR-like_sg6 Heli 62.4 3.9 8.4E-05 37.6 1.2 26 95-120 32-57 (120)
473 COG0275 Predicted S-adenosylme 62.1 35 0.00075 36.8 8.3 61 230-298 8-68 (314)
474 PLN03075 nicotianamine synthas 61.2 11 0.00024 40.5 4.5 101 515-621 123-232 (296)
475 cd05278 FDH_like Formaldehyde 61.2 42 0.0009 35.3 9.0 94 253-355 167-267 (347)
476 PLN02740 Alcohol dehydrogenase 60.8 35 0.00075 37.2 8.5 95 253-356 198-301 (381)
477 PLN02586 probable cinnamyl alc 60.8 26 0.00055 38.0 7.4 94 254-356 184-279 (360)
478 PRK13699 putative methylase; P 60.3 27 0.00057 35.9 7.0 42 253-297 163-204 (227)
479 COG1063 Tdh Threonine dehydrog 60.2 37 0.0008 36.9 8.5 95 255-357 170-271 (350)
480 cd01104 HTH_MlrA-CarA Helix-Tu 60.2 4.7 0.0001 32.7 1.2 27 94-120 32-58 (68)
481 KOG1271 Methyltransferases [Ge 59.7 8.8 0.00019 38.6 3.2 101 518-622 70-181 (227)
482 cd08294 leukotriene_B4_DH_like 59.6 64 0.0014 33.6 10.0 92 253-355 143-241 (329)
483 cd00401 AdoHcyase S-adenosyl-L 59.6 28 0.00061 39.1 7.6 88 253-357 201-291 (413)
484 PRK10309 galactitol-1-phosphat 59.5 42 0.00092 35.7 8.8 94 253-356 160-261 (347)
485 cd04783 HTH_MerR1 Helix-Turn-H 59.3 5.8 0.00013 36.7 1.9 27 94-120 32-58 (126)
486 KOG2651 rRNA adenine N-6-methy 59.0 25 0.00054 39.1 6.7 41 253-295 153-193 (476)
487 PF03514 GRAS: GRAS domain fam 58.8 81 0.0018 34.9 10.9 100 255-354 112-243 (374)
488 cd08242 MDR_like Medium chain 58.2 61 0.0013 33.7 9.6 89 253-354 155-244 (319)
489 PLN02827 Alcohol dehydrogenase 58.0 31 0.00067 37.6 7.5 94 253-355 193-295 (378)
490 COG0220 Predicted S-adenosylme 58.0 8 0.00017 39.9 2.8 100 517-621 50-163 (227)
491 cd04777 HTH_MerR-like_sg1 Heli 57.9 5.1 0.00011 36.0 1.2 33 95-130 31-63 (107)
492 PF04445 SAM_MT: Putative SAM- 57.9 23 0.0005 36.8 6.1 69 255-326 77-160 (234)
493 COG0287 TyrA Prephenate dehydr 57.8 44 0.00095 35.5 8.4 90 255-352 4-95 (279)
494 cd04780 HTH_MerR-like_sg5 Heli 57.3 4.6 0.0001 35.8 0.8 35 93-130 31-66 (95)
495 cd04774 HTH_YfmP Helix-Turn-He 57.1 5.5 0.00012 35.4 1.2 28 93-120 30-58 (96)
496 COG1565 Uncharacterized conser 56.7 20 0.00043 39.5 5.6 44 254-297 78-128 (370)
497 cd01279 HTH_HspR-like Helix-Tu 56.6 1.8 3.9E-05 38.5 -1.9 35 93-130 31-66 (98)
498 cd05285 sorbitol_DH Sorbitol d 56.6 62 0.0013 34.3 9.4 94 253-356 162-266 (343)
499 cd04766 HTH_HspR Helix-Turn-He 55.8 2.1 4.6E-05 37.4 -1.6 35 93-130 31-66 (91)
500 cd08236 sugar_DH NAD(P)-depend 55.4 72 0.0016 33.6 9.6 95 253-356 159-259 (343)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=2.5e-135 Score=1098.45 Aligned_cols=458 Identities=44% Similarity=0.878 Sum_probs=430.4
Q ss_pred CccccCCchhhhhh--ccccccccccCCCC-cCccccccCCCCCCCCCCCCCCCcccccccCccchhhhhhcccccccch
Q 006518 134 NYVPCFNESRNLAL--GYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 210 (642)
Q Consensus 134 ~y~pC~d~~~~~~~--~~~r~~~~er~C~~-~~r~rCL~~~p~gy~~P~~WP~srd~~W~~nvp~t~~~~ls~~k~~q~W 210 (642)
|||||+|+++++++ .++|++|+|||||+ +++.+||+|+|+||+.|++||+|||++||+|+||++ |+.+|..|||
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~---L~~~K~~qnW 77 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTK---LAEEKADQNW 77 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchH---Hhhhcccccc
Confidence 79999999999999 89999999999999 669999999999999999999999999999999999 6789999999
Q ss_pred hcccccccccccccccc-cchhhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHH
Q 006518 211 MMLEEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 289 (642)
Q Consensus 211 ~~~dk~~~~F~~~~~~y-d~~~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ 289 (642)
++.+++.+.|++++++| +++.+|++++.++++... .....+++||||||+|+|+++|+++++.++++++.|.++.
T Consensus 78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~----~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK----WGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccc----cCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 99999999999999999 689999999999998621 1136789999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCchhhhhhHHh
Q 006518 290 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 369 (642)
Q Consensus 290 ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~ 369 (642)
++|+|.|||+++.+..+...+|||++++||+|||+.|++.|.++.+.+|.|++|+|||||+|+++.+..+. ..+++.
T Consensus 154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~---r~~~~~ 230 (506)
T PF03141_consen 154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQ---RTDEDL 230 (506)
T ss_pred hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccc---cchHHH
Confidence 99999999999999888899999999999999999999999998889999999999999999999998762 234567
Q ss_pred HhhhhhhhhhhhccceEEeeecCceEEEEecCcccccccCCCCCCCCCCCCCCCCCCCccccCCceeccCCCC-cccCCc
Q 006518 370 QKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNR-RWIPIE 448 (642)
Q Consensus 370 ~~~w~~l~~l~~~lcW~ll~~~~~~~IwqK~~~~~C~~~R~~~~~p~lC~~~~d~~~~wY~~l~~Ci~~~~~~-~~~~~~ 448 (642)
.+.|+.|+.+++++||++++++.+++|||||.+++||.+|+....|++|+..+|++++||++|++||+++++. .+++++
T Consensus 231 ~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~ 310 (506)
T PF03141_consen 231 EEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGG 310 (506)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCccccccccc
Confidence 7899999999999999999999999999999999999999998889999999999999999999999999865 467889
Q ss_pred ccCCCCcccccCCCcccc---ccCCccchhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCcceEEEecCcC
Q 006518 449 ERRNWPSRANLNKNELAV---YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAH 525 (642)
Q Consensus 449 ~~~~wP~rl~~~p~~~~~---~~~~~~~f~~d~~~w~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~rnv~Dm~~~ 525 (642)
.+++||+||+++|+|+.. .|.++|+|.+|+++||++|++||++++..+ ++++||||||||||
T Consensus 311 ~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i---------------~~~~iRNVMDMnAg 375 (506)
T PF03141_consen 311 WLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAI---------------KWGRIRNVMDMNAG 375 (506)
T ss_pred CCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccc---------------cccceeeeeeeccc
Confidence 999999999999999874 899999999999999999999999886444 46789999999999
Q ss_pred chhhhhhhhccCCCcEEEEeecCCCCCchhhhhccccccccccccccCCCCCCcccccccccccccccCCCCCCCchhhh
Q 006518 526 FGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIF 605 (642)
Q Consensus 526 ~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~i~~RGl~g~~~~~ce~~~typrtydl~h~~~~~~~~~~~~~~c~~~~~~ 605 (642)
||||||||++ +|||||||||+.++|||++||||||||+||||||+|||||||||||||++|||.++ +||+|++||
T Consensus 376 ~GGFAAAL~~--~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~---~rC~~~~il 450 (506)
T PF03141_consen 376 YGGFAAALID--DPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYK---DRCEMEDIL 450 (506)
T ss_pred ccHHHHHhcc--CCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhc---ccccHHHHH
Confidence 9999999987 89999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhhccccCCCceeeec
Q 006518 606 TEIDRILRPEVSKSNS 621 (642)
Q Consensus 606 ~e~dRilrP~g~~~~~ 621 (642)
+||||||||||+++.-
T Consensus 451 lEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 451 LEMDRILRPGGWVIIR 466 (506)
T ss_pred HHhHhhcCCCceEEEe
Confidence 9999999999999864
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.92 E-value=5.3e-26 Score=247.83 Aligned_cols=169 Identities=20% Similarity=0.261 Sum_probs=138.0
Q ss_pred CCceeccCCCCcccCCcccCCCCcccc------cCCCccc---------cccCCccchhhhhhhHHHHHHHHHHhhcccc
Q 006518 432 LQPCIGGTRNRRWIPIEERRNWPSRAN------LNKNELA---------VYGVHPEEFAEDTENWKTAVGNFWSLLSPLI 496 (642)
Q Consensus 432 l~~Ci~~~~~~~~~~~~~~~~wP~rl~------~~p~~~~---------~~~~~~~~f~~d~~~w~~~v~~y~~~~~~~~ 496 (642)
...|+.++|.++.+|+ +||+..+ ++-+.|. ......-.|.....++++++.+|...|..++
T Consensus 34 ~~~CLVp~P~gYk~P~----~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~ 109 (506)
T PF03141_consen 34 RLRCLVPPPKGYKTPI----PWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMI 109 (506)
T ss_pred CCccccCCCccCCCCC----CCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHh
Confidence 3789999999998887 9999764 2222232 2334557799999999999999999898887
Q ss_pred cCCCCCCCCCCCCCCCCCcceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhccccccccccc-cccCC
Q 006518 497 FSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDW-CEAFP 574 (642)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl~g~~~~~-ce~~~ 574 (642)
... ...+.||++||+|||+|+|||+|++ +.|-+|.++|.+.+ ++.++++|||+..++.-- -.+||
T Consensus 110 ~~~-----------~~~g~iR~~LDvGcG~aSF~a~l~~--r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLP 176 (506)
T PF03141_consen 110 PLI-----------KWGGGIRTALDVGCGVASFGAYLLE--RNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLP 176 (506)
T ss_pred hcc-----------ccCCceEEEEeccceeehhHHHHhh--CCceEEEcccccCCchhhhhhhhcCcchhhhhhcccccc
Confidence 320 1347899999999999999999998 89999999999987 999999999986665544 46777
Q ss_pred CCCCcccccccccccccccCCCCCCCchhhhhhhccccCCCceeeecc
Q 006518 575 TYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSP 622 (642)
Q Consensus 575 typrtydl~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~ 622 (642)
++.|+||||||++.+..|.. .= ..+|+|+|||||||||+++|-
T Consensus 177 fp~~~fDmvHcsrc~i~W~~---~~--g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 177 FPSNAFDMVHCSRCLIPWHP---ND--GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred CCccchhhhhcccccccchh---cc--cceeehhhhhhccCceEEecC
Confidence 77799999999888888873 11 379999999999999999984
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.75 E-value=4.1e-18 Score=173.65 Aligned_cols=106 Identities=24% Similarity=0.249 Sum_probs=95.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC-----ceEEeecccCCCCCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~-----~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
++.+|||||||||.++..+++... ..+|+++|+|+.|++.|+++..+ +.++.+|++.|||+|++||+|.+++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg- 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG- 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh-
Confidence 458999999999999999998853 78899999999999999987543 67899999999999999999999998
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
++..++.+++|+|++|||||||++++.+.....
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 888899999999999999999999998876544
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.71 E-value=2.2e-17 Score=168.43 Aligned_cols=105 Identities=24% Similarity=0.315 Sum_probs=81.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCceEEeecccCCCCCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----g-l~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
++.+|||+|||||.++..++++......|+++|+|+.|++.|+++ + .++.+.++|++++||++++||+|+|+++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg- 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG- 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh-
Confidence 457999999999999999998744567899999999999999865 2 2678999999999999999999999998
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
++..++..++|+|++|+|||||++++.+...
T Consensus 126 lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 7777889999999999999999999988754
No 5
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.68 E-value=2.8e-16 Score=175.17 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=82.2
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeeccc--CCCCCCCCccEEEeccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK--QLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---l~~~~~~~da~--~Lpfpd~SFDlV~~s~~ll 328 (642)
..+|||||||+|.++..|++.+ ..++++|+++.|++.+++.. .++.+.+.++. .+++++++||+|+|..+ +
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~-l 113 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL-L 113 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhh-H
Confidence 4689999999999999999874 36899999999998876542 24567777774 57888899999999988 4
Q ss_pred ccccc--HHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 329 DWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 329 ~~~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
++.++ ...++.++.|+|||||++++.+...
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 44444 3579999999999999999987643
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.66 E-value=8.3e-16 Score=159.18 Aligned_cols=107 Identities=20% Similarity=0.151 Sum_probs=91.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--------CCceEEeecccCCCCCCCCccEEEec
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg--------l~~~~~~~da~~Lpfpd~SFDlV~~s 324 (642)
+..+|||+|||+|.++..++++......|+++|+|++|++.|+++. .++.+.+++++.+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4579999999999999999876323357999999999999997652 24678889999999999999999999
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
.+ +|+.+++..+++|+.|+|||||++++.+.....
T Consensus 153 ~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 153 YG-LRNVVDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred cc-cccCCCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 88 777788999999999999999999999876543
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.66 E-value=2.6e-16 Score=134.59 Aligned_cols=93 Identities=30% Similarity=0.463 Sum_probs=79.4
Q ss_pred EEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC--ceEEeecccCCCCCCCCccEEEeccccccccccHH
Q 006518 258 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP--AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG 335 (642)
Q Consensus 258 LDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~--~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d~~ 335 (642)
||+|||+|.++..++++ ...+++++|+++++++.++++... ..+...+++.+|+++++||+|++..+ ++|.++..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSV-LHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESH-GGGSSHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccc-eeeccCHH
Confidence 89999999999999998 346799999999999999987543 34888999999999999999999998 66668888
Q ss_pred HHHHHHHhcccCCcEEEE
Q 006518 336 ILLLEVDRVLKPGGYFVW 353 (642)
Q Consensus 336 ~~L~Ei~RvLKPGG~Lvi 353 (642)
++++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.65 E-value=7.1e-16 Score=157.73 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=110.4
Q ss_pred ccccccccccchhhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC
Q 006518 219 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298 (642)
Q Consensus 219 ~F~~~~~~yd~~~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg 298 (642)
.|+..+..|+..+..++.+.+.+..... .....+|||+|||+|.++..+++.+ ..++++|+|+.|++.|+++.
T Consensus 12 ~F~~aa~~Y~~~~~~q~~~a~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 12 AFGRAAAHYEQHAELQRQSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHhcC----ccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC
Confidence 6777777887666666666655432221 1245789999999999999998765 46999999999999999886
Q ss_pred CCceEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 299 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 299 l~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
....+.++|++.+|+++++||+|+++.+ ++|.+++..++.++.|+|||||.++++.+....
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 6566788899999999999999999987 889999999999999999999999999987654
No 9
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.52 E-value=6.8e-14 Score=141.83 Aligned_cols=131 Identities=20% Similarity=0.197 Sum_probs=102.7
Q ss_pred ccchhhhHHHHHHHHhhccc--------ccccccCCCeEEEECCCCchHHHHHhhcCCc-----eeEEEEecCCHHHHHH
Q 006518 227 FDGVEDYSHQIAEMIGLRNE--------SNFILAGVRTILDIGCGYGSFGAHLFSKELL-----TMCIANYEASGSQVQL 293 (642)
Q Consensus 227 yd~~~~y~~~i~e~L~~~~g--------~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~-----~~sV~giD~S~~ml~~ 293 (642)
|+..+.+++.+.+.+..+.. ..+.+....++||++||||..+..+.+.-.. ...|+..|++++|+..
T Consensus 66 F~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~v 145 (296)
T KOG1540|consen 66 FESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAV 145 (296)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHH
Confidence 34445555666665554433 1233456789999999999999999876322 2789999999999988
Q ss_pred HHHcC----C----CceEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 294 TLERG----L----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 294 A~erg----l----~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+++|. + ...++.+|+++|||++++||+.++++. +....+++++|+|++|||||||+|.+-++..
T Consensus 146 gkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafG-IRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 146 GKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFG-IRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecc-eecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 77653 3 256888999999999999999999998 7777899999999999999999999877643
No 10
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.52 E-value=4.5e-14 Score=140.13 Aligned_cols=203 Identities=18% Similarity=0.264 Sum_probs=147.8
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~ 332 (642)
..++|.|+|||+|..|..|+++ ++...|+|+|.|++|++.|+++..++.|..+|...+. +++.+|+++++.+ ++|.+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAv-lqWlp 106 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAV-LQWLP 106 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhh-hhhcc
Confidence 5689999999999999999988 4678899999999999999999999999999988775 4568999999987 99999
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCCCCchhhhhhHHhHhhhhhhhhhhhccceEEeeecCceEEEEecC-cccccccCCC
Q 006518 333 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTS-KASCYSSRKP 411 (642)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~w~~l~~l~~~lcW~ll~~~~~~~IwqK~~-~~~C~~~R~~ 411 (642)
+...+|..+...|.|||.+.+..|..... .....|.+.+++.-|......... .+++. ...-|-..-
T Consensus 107 dH~~ll~rL~~~L~Pgg~LAVQmPdN~de---------psH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~lL- 174 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLAVQMPDNLDE---------PSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAAYYELL- 174 (257)
T ss_pred ccHHHHHHHHHhhCCCceEEEECCCccCc---------hhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHHh-
Confidence 99999999999999999999998864331 233456666776677655444332 23332 122332211
Q ss_pred CCCCCCCCCCCCCCCCccccCCceeccCCCCcccCCcccCCCCcccccCCCccccccCCccchhhhhhhHHHHHHHHHHh
Q 006518 412 GSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSL 491 (642)
Q Consensus 412 ~~~p~lC~~~~d~~~~wY~~l~~Ci~~~~~~~~~~~~~~~~wP~rl~~~p~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~ 491 (642)
.|.-| ..+.+++.||++|..-- +-..|+.+..+.+|=.+| |.+.|+.-...|..+
T Consensus 175 --a~~~~-rvDiW~T~Y~h~l~~a~---aIvdWvkgTgLrP~L~~L-------------------~e~~~~~FL~~Y~~~ 229 (257)
T COG4106 175 --APLAC-RVDIWHTTYYHQLPGAD---AIVDWVKGTGLRPYLDRL-------------------DEEERQRFLDRYLAL 229 (257)
T ss_pred --Ccccc-eeeeeeeeccccCCCcc---chhhheeccccceecccc-------------------CHHHHHHHHHHHHHH
Confidence 13344 47789999999765321 112455555555444443 567788888899887
Q ss_pred hccc
Q 006518 492 LSPL 495 (642)
Q Consensus 492 ~~~~ 495 (642)
|..-
T Consensus 230 l~~a 233 (257)
T COG4106 230 LAEA 233 (257)
T ss_pred HHHh
Confidence 7643
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=7.4e-14 Score=143.57 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=86.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~ 332 (642)
.+.+|||||||+|.++..++++. ....++++|+|+.|++.|++++ +.+..+|++.++ ++++||+|+|+.+ +||.+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~ 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNAA-LQWVP 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEehh-hhhCC
Confidence 44799999999999999998874 3467999999999999998875 456677887775 5679999999988 78888
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 333 KDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
++..+++++.++|||||++++..+.
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999999999999998764
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.51 E-value=1.5e-13 Score=129.18 Aligned_cols=98 Identities=30% Similarity=0.577 Sum_probs=82.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~ 332 (642)
...+|||||||+|.++..+++.+. +++++|+++.+++. ........+....+.++++||+|+|+.+ ++|.+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~-l~~~~ 92 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDV-LEHLP 92 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESS-GGGSS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHH-Hhhcc
Confidence 457999999999999999988864 69999999999988 3333444444556678889999999988 77778
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 333 KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
++..+|.++.++|||||+++++++...
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 899999999999999999999999753
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.51 E-value=3.2e-14 Score=143.90 Aligned_cols=106 Identities=19% Similarity=0.326 Sum_probs=93.9
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
.+.+|||||||.|.++..||+.| .+|+|+|.++.+++.|+.+ ++.+.+....++++....++||+|+|..+ +
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV-l 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV-L 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhH-H
Confidence 45899999999999999999998 5699999999999988744 56777888888888887789999999999 7
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCchh
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQA 362 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~ 362 (642)
+|.++++.+++.+.+++||||.+++++++.....
T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 135 EHVPDPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred HccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 7789999999999999999999999999876543
No 14
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.51 E-value=1.5e-13 Score=146.50 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=89.9
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg------l~~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
.+.+|||||||+|.++..|++.+ ..|+++|.++.|++.|+++. ..+.+.+++++.+++++++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 45799999999999999998875 46999999999999997652 1466788888999988889999999998
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
++|..++..+++++.++|||||.+++++++..
T Consensus 208 -LeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 208 -IEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred -HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 67778899999999999999999999998754
No 15
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.50 E-value=1.7e-13 Score=137.14 Aligned_cols=106 Identities=23% Similarity=0.333 Sum_probs=91.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CceEEeecccCCCCCCCCccEEEecccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl-~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
...+|||+|||+|.++..+++.+ ....++++|+++.+++.++++.. ++.+...|.+.+++++++||+|++..+ ++|.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~~~ 111 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLA-LQWC 111 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhh-hhhc
Confidence 34789999999999999999875 34568999999999998887643 456778899999999999999999988 7888
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 332 QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
.++..++.++.++|||||.++++++....
T Consensus 112 ~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 112 DDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 88899999999999999999999876543
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=99.50 E-value=1.7e-13 Score=147.14 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=88.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
.+.+|||||||+|.++..|+++. ..+|+++|+++.|++.|+++ ++ ++.+.++|+..+|+++++||+|++..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 45799999999999999999863 35799999999999887653 43 467888999999999999999999988
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+++.++...+++++.|+|||||+|++.++..
T Consensus 196 -~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 196 -GEHMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred -hhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 5556788899999999999999999988643
No 17
>PRK05785 hypothetical protein; Provisional
Probab=99.48 E-value=1.7e-13 Score=139.25 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=79.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d 333 (642)
..+|||||||||.++..+++.. ..+|+|+|+|++|++.|+++. .+.+++++.+|+++++||+|+++.+ +++.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~-l~~~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFA-LHASDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecCh-hhccCC
Confidence 4799999999999999998873 357999999999999998763 3567899999999999999999998 677889
Q ss_pred HHHHHHHHHhcccCC
Q 006518 334 DGILLLEVDRVLKPG 348 (642)
Q Consensus 334 ~~~~L~Ei~RvLKPG 348 (642)
++++++|++|+|||.
T Consensus 126 ~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999999999994
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.48 E-value=4.1e-13 Score=135.36 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=89.1
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
+..+|||+|||+|.++..+++......+++++|+++.|++.|+++ +. ++.+..+|+..+++++++||+|++..+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~- 123 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG- 123 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc-
Confidence 347999999999999999987633446799999999999888754 22 456778888889998899999999987
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+++.++...+++++.++|||||++++.+...
T Consensus 124 l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 124 LRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred cccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 7777888899999999999999999987654
No 19
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.46 E-value=7e-13 Score=137.87 Aligned_cols=104 Identities=25% Similarity=0.318 Sum_probs=86.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCc--eeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELL--TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~--~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
...+|||+|||+|.++..+++.... ...++|+|+|+.|++.|+++..++.+.++++..+|+++++||+|++..+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 3468999999999999999875321 2368999999999999998877788888999999999999999998754
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCCCCchhhh
Q 006518 331 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 364 (642)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~l 364 (642)
...+.|+.|+|||||+|++..+.......+
T Consensus 161 ----~~~~~e~~rvLkpgG~li~~~p~~~~l~el 190 (272)
T PRK11088 161 ----PCKAEELARVVKPGGIVITVTPGPRHLFEL 190 (272)
T ss_pred ----CCCHHHHHhhccCCCEEEEEeCCCcchHHH
Confidence 124689999999999999999987765444
No 20
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.45 E-value=5e-13 Score=138.66 Aligned_cols=104 Identities=18% Similarity=0.207 Sum_probs=87.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CceEEeecccCCCCCCCCccEEEecccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl---~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~ 329 (642)
+..+|||||||+|..+..+++.. ...++++|+++.|++.|+++.. .+.+...|+...|+++++||+|++..+++|
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILH 129 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHh
Confidence 34799999999999999998652 3579999999999999987642 466778888889999999999999887566
Q ss_pred cc-ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 330 WD-QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 330 ~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+. .+...+++++.++|||||+|+++++..
T Consensus 130 ~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 130 LSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 54 266789999999999999999998754
No 21
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.45 E-value=7.7e-14 Score=142.74 Aligned_cols=200 Identities=17% Similarity=0.221 Sum_probs=133.3
Q ss_pred cchhcccccccccccccccccchhhhHHHHHHHHhhcccccc-cccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecC
Q 006518 208 KRMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNF-ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA 286 (642)
Q Consensus 208 q~W~~~dk~~~~F~~~~~~yd~~~~y~~~i~e~L~~~~g~~l-~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~ 286 (642)
-+|++...+...+-+.++||-...+ ++.+++..... .+ ......++||||+|.|..+..|+.. ..+|++.|.
T Consensus 52 L~~f~S~T~iNG~LgRG~MFvfS~~---Q~~~LL~~~~~-~~~~~~~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~ 124 (265)
T PF05219_consen 52 LSWFMSKTDINGILGRGSMFVFSEE---QFRKLLRISGF-SWNPDWKDKSLLDLGAGDGEVTERLAPL---FKEVYATEA 124 (265)
T ss_pred HHHHHhHHhHhhhhcCCcEEEecHH---HHHHHhhhhcc-CCCCcccCCceEEecCCCcHHHHHHHhh---cceEEeecC
Confidence 4566666666688888889865544 33444432211 11 1134578999999999999999876 345899999
Q ss_pred CHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCchhhhhh
Q 006518 287 SGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN 366 (642)
Q Consensus 287 S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~ 366 (642)
|..|....+++|..+ .+..++.-.+.+||+|.|.++ +...++|..+|++|++.|+|+|+++++...+.. +.
T Consensus 125 S~~Mr~rL~~kg~~v----l~~~~w~~~~~~fDvIscLNv-LDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~----py 195 (265)
T PF05219_consen 125 SPPMRWRLSKKGFTV----LDIDDWQQTDFKFDVISCLNV-LDRCDRPLTLLRDIRRALKPNGRLILAVVLPFR----PY 195 (265)
T ss_pred CHHHHHHHHhCCCeE----EehhhhhccCCceEEEeehhh-hhccCCHHHHHHHHHHHhCCCCEEEEEEEeccc----cc
Confidence 999999999999643 344445545668999999998 777889999999999999999999999876644 22
Q ss_pred HHhHh-hhhhhhhhhh--ccceEEeeecCceEEEEecCcccccccCCCCCCCCCCCCCCCCCCCccc
Q 006518 367 KENQK-RWNFVRDFVE--NLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYR 430 (642)
Q Consensus 367 ~e~~~-~w~~l~~l~~--~lcW~ll~~~~~~~IwqK~~~~~C~~~R~~~~~p~lC~~~~d~~~~wY~ 430 (642)
.|... .|.+..+..+ ...|+..+...- +.....-++.....+.||+|+ +|...+||+
T Consensus 196 VE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-----~v~~p~GF~v~~~tr~PYLcE--GD~~~~~Y~ 255 (265)
T PF05219_consen 196 VEFGGGKSNRPSELLPVKGATFEEQVSSLV-----NVFEPAGFEVERWTRLPYLCE--GDLYQSYYV 255 (265)
T ss_pred EEcCCCCCCCchhhcCCCCCcHHHHHHHHH-----HHHHhcCCEEEEEeccCcccc--CcccCceEE
Confidence 33222 3333333332 122322222111 111122333344566799999 889999998
No 22
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.45 E-value=6.7e-13 Score=136.25 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=88.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~ 332 (642)
+..+|||||||+|.++..+++.. ...+++++|+|+.|++.|+++..++.+..+|+..+. ++++||+|+++.+ +||.+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANAS-LQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccC-hhhCC
Confidence 45799999999999999998873 446799999999999999988666778888887665 4568999999988 78888
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 333 KDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
+...+++++.++|||||.+++..+.
T Consensus 108 d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 108 DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 8889999999999999999998654
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.44 E-value=5.5e-13 Score=126.30 Aligned_cols=103 Identities=24% Similarity=0.357 Sum_probs=87.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--CCCCCccEEEecc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--fpd~SFDlV~~s~ 325 (642)
+..+|||+|||+|.++..|++.......++++|.+++|++.|+++ +. ++.+.+.|+.+++ ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 457999999999999999995423456799999999999998763 55 4788999998887 66 7899999998
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
+ +++..++..+++++.++||+||.+++.++.
T Consensus 82 ~-l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 V-LHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp T-GGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred c-hhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 8 677788889999999999999999999886
No 24
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=6.5e-13 Score=136.65 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=87.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC-CCCCCccEEEecc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lp-fpd~SFDlV~~s~ 325 (642)
...+|||+|||+|.++..+++.+ .+|+++|+|+.|++.|+++ ++ ++.+.++++..++ +++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45799999999999999999886 4699999999999988765 33 4567777887764 6678999999998
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
+ +++..++..++.++.++|||||++++..+...
T Consensus 121 v-l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 121 V-LEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred H-HHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 8 77778888999999999999999999877643
No 25
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.41 E-value=2.1e-12 Score=131.50 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcC-CceeEEEEecCCHHHHHHHHHc------CCCceEEeecccCCCCCCCCccEEEecc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLPYPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g-~~~~sV~giD~S~~ml~~A~er------gl~~~~~~~da~~Lpfpd~SFDlV~~s~ 325 (642)
+..+|||||||+|.++..++++. ....+++++|+|+.|++.|+++ ..++.+..+|+..++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 34789999999999999998763 2357799999999999998765 23467888898888876 489999998
Q ss_pred cccccccc--HHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 326 CGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 326 ~ll~~~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+ +|+.++ ...++++++|+|||||.++++++..
T Consensus 131 ~-l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 T-LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred c-hhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 8 555533 3579999999999999999998754
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.41 E-value=8.2e-13 Score=117.59 Aligned_cols=101 Identities=21% Similarity=0.261 Sum_probs=78.6
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecc-cCCCCCCCCccEEEecc-
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFAS-KQLPYPSLSFDMLHCAR- 325 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg------l~~~~~~~da-~~Lpfpd~SFDlV~~s~- 325 (642)
..+|||||||+|.++..++++. ...+++++|+++++++.|+++. .++.+.+.|+ ...... +.||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 4789999999999999999931 2456999999999999887663 4677888888 334444 4699999998
Q ss_pred cccccc--ccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 326 CGVDWD--QKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 326 ~ll~~~--~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
++.++. ++...+++++.+.|+|||++++.++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 422232 3456799999999999999999763
No 27
>PRK08317 hypothetical protein; Provisional
Probab=99.41 E-value=2.4e-12 Score=128.38 Aligned_cols=103 Identities=27% Similarity=0.373 Sum_probs=88.7
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~ 329 (642)
..+|||+|||+|.++..+++......+++++|.++.+++.++++ +..+.+...++..+++++++||+|++..+ ++
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-~~ 98 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV-LQ 98 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech-hh
Confidence 47999999999999999988743446799999999999998876 33566777888888998899999999988 66
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 330 WDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
+..++..+++++.++|||||++++.++.
T Consensus 99 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 99 HLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 6678889999999999999999998864
No 28
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.40 E-value=2.2e-12 Score=138.32 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=87.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccCCCCCCCCccEEEeccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg--l~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
...+|||||||+|.++..+++.. ....++++|.+++|++.|+++. .++.+..+|++.+++++++||+|+++.+ +++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~-L~~ 190 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGS-IEY 190 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcCh-hhh
Confidence 34799999999999999888752 3357999999999999988763 2456788899999999999999999987 566
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 331 DQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
.+++..+|+++.|+|||||.+++.++.
T Consensus 191 ~~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 191 WPDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 678889999999999999999987654
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.38 E-value=4.1e-12 Score=126.19 Aligned_cols=96 Identities=18% Similarity=0.282 Sum_probs=77.1
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
..+|||+|||+|.++..|++++ .+|+++|+|+.|++.++++ ++. +.+.+.|...++++ ++||+|+|+.+ +
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVV-L 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecc-h
Confidence 4789999999999999999986 3699999999999887643 433 56667787777775 57999999988 4
Q ss_pred cccc--cHHHHHHHHHhcccCCcEEEEE
Q 006518 329 DWDQ--KDGILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 329 ~~~~--d~~~~L~Ei~RvLKPGG~Lvis 354 (642)
|+.+ +...++.++.++|||||++++.
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 5543 3467999999999999996554
No 30
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.38 E-value=7e-13 Score=117.11 Aligned_cols=93 Identities=25% Similarity=0.426 Sum_probs=74.5
Q ss_pred EEEECCCCchHHHHHhhcC--CceeEEEEecCCHHHHHHHHHcC----CCceEEeecccCCCCCCCCccEEEeccccccc
Q 006518 257 ILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 257 VLDIGCGtG~~a~~La~~g--~~~~sV~giD~S~~ml~~A~erg----l~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
|||+|||+|..+..+++.. .....++++|++++|++.++++. .++.+.++|+.++++.+++||+|+|....+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999873 12368999999999999998764 78899999999999989999999996553454
Q ss_pred cccH--HHHHHHHHhcccCCc
Q 006518 331 DQKD--GILLLEVDRVLKPGG 349 (642)
Q Consensus 331 ~~d~--~~~L~Ei~RvLKPGG 349 (642)
..+. ..+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 4433 579999999999998
No 31
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.36 E-value=4.5e-12 Score=141.52 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=88.4
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCceEEeecccCCCCCCCCccEEEeccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg----l~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
+..+|||||||+|..+..+++.. ...++++|+|+.|++.|+++. ..+.+..+|...+++++++||+|+|..+ +
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~-l 342 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT-I 342 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCc-c
Confidence 45799999999999999998763 357999999999999987652 2466788898889998889999999988 5
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+|.+++..++.+++|+|||||.++++++..
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 666788899999999999999999998754
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.36 E-value=7.3e-12 Score=124.26 Aligned_cols=98 Identities=15% Similarity=0.285 Sum_probs=77.1
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEecccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~ 329 (642)
+.+|||+|||+|.++..+++++ ..|+++|+|+.|++.+++ .++++.+...+....+++ ++||+|+++.++++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 4689999999999999999886 369999999999987653 356666666676666665 57999999988433
Q ss_pred cc-ccHHHHHHHHHhcccCCcEEEEEe
Q 006518 330 WD-QKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 330 ~~-~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
.. ++...++++++|+|||||++++.+
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 32 234679999999999999966654
No 33
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.36 E-value=4.6e-12 Score=135.26 Aligned_cols=101 Identities=21% Similarity=0.252 Sum_probs=83.8
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH--Hc----CCCceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~--er----gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
.+++|||||||+|.++..+++.+. ..|+|+|+|+.|+..++ ++ ..++.+..++++.+|+ +++||+|+|..+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 347999999999999999998863 35999999999886432 22 2356788889999998 779999999988
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
++|..++..+|++++++|||||.+++.+..
T Consensus 199 -l~H~~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 199 -LYHRRSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred -hhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 556678889999999999999999998643
No 34
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.35 E-value=4.4e-12 Score=131.43 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=87.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
.+.+|||||||+|..+..+++.......|+++|.++.|++.|+++ +. ++.+..++++.+++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v- 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV- 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc-
Confidence 457999999999998877766532345799999999999998864 33 456777899999999899999999877
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+++.++...+++++.|+|||||+|++++...
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 6777788889999999999999999987643
No 35
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.34 E-value=1.1e-11 Score=127.37 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=82.7
Q ss_pred CCCeEEEECCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~-g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFDlV~~s~ 325 (642)
...+|||||||+|..+..+++. ......++++|+|+.|++.|+++ +. ++.+.++++..+|++ .||+|+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 4578999999999999888763 12456899999999999999765 22 467788888888775 499999998
Q ss_pred ccccccccH--HHHHHHHHhcccCCcEEEEEeCCC
Q 006518 326 CGVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 326 ~ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+ +|+.++. ..++++++++|||||.|++++...
T Consensus 134 ~-l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 134 T-LQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred H-HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 8 5555433 469999999999999999998543
No 36
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=7.2e-12 Score=123.79 Aligned_cols=102 Identities=20% Similarity=0.298 Sum_probs=85.4
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCCce-EEeecccCCC-CCCCCccEEEecccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAM-IGSFASKQLP-YPSLSFDMLHCARCG 327 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er-----gl~~~-~~~~da~~Lp-fpd~SFDlV~~s~~l 327 (642)
..|||||||||..-.++--. +..+|+.+|+++.|-++|.++ ..++. |++++.+++| .+++|+|.|+|..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv- 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV- 154 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-
Confidence 46899999999987776433 356799999999998876543 34454 7889999999 89999999999999
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
+.-..++.+.|.|+.|+|||||++++.+++..
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 55568899999999999999999999988754
No 37
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.30 E-value=1.5e-11 Score=130.75 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=81.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH--Hc----CCCceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~--er----gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
++++|||||||+|.++..++..+. ..|+|+|+|+.|+..+. ++ ...+.+...+++.+|... +||+|+|..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~-~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY-AFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC-CcCEEEEcch
Confidence 458999999999999999988763 36899999999986532 11 124556677888888654 8999999998
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
++|..++..+|++++|+|||||.|++.+..
T Consensus 198 -L~H~~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 198 -LYHRKSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred -hhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 555678889999999999999999998653
No 38
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.30 E-value=8.5e-13 Score=115.73 Aligned_cols=92 Identities=29% Similarity=0.399 Sum_probs=58.8
Q ss_pred EEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCceEEeecccCCC-C-CCCCccEEEeccccccc
Q 006518 258 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLP-Y-PSLSFDMLHCARCGVDW 330 (642)
Q Consensus 258 LDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----g-l~~~~~~~da~~Lp-f-pd~SFDlV~~s~~ll~~ 330 (642)
||||||+|.++..+++.. ...+++++|+|+.|++.|+++ . .............. . ..++||+|++..+ +||
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v-l~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV-LHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T-TS-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh-Hhh
Confidence 799999999999999885 678899999999999766554 2 12223333322222 1 2259999999998 666
Q ss_pred cccHHHHHHHHHhcccCCcEE
Q 006518 331 DQKDGILLLEVDRVLKPGGYF 351 (642)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~L 351 (642)
.++...+++.+.++|||||.|
T Consensus 79 l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhHHHHHHHHHHHcCCCCCC
Confidence 688899999999999999986
No 39
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.27 E-value=4.1e-11 Score=120.02 Aligned_cols=101 Identities=16% Similarity=0.047 Sum_probs=81.8
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~ 332 (642)
+..+|||||||+|.++..|++.. ...+++|+|+|++|++.|+++...+.+.++++.. |+++++||+|++..+++|+.+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCH
Confidence 34789999999999999998762 2357999999999999998875566677778777 889999999999998656543
Q ss_pred c-HHHHHHHHHhcccCCcEEEEEeCC
Q 006518 333 K-DGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 333 d-~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
+ ...+++++.|++ ++++++.+..
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEee
Confidence 2 357999999998 5688887753
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.26 E-value=4.6e-11 Score=125.35 Aligned_cols=97 Identities=15% Similarity=0.258 Sum_probs=78.3
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEecccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~ 329 (642)
+.+|||+|||+|.++.+|++.+ ..|+++|.|+.+++.+++ .++++.+...|....++ +++||+|++..+ ++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v-l~ 195 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVV-LM 195 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcch-hh
Confidence 3589999999999999999886 469999999999987654 36666777777766655 578999999987 45
Q ss_pred ccc--cHHHHHHHHHhcccCCcEEEEEe
Q 006518 330 WDQ--KDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 330 ~~~--d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
+.+ +...+++++.++|||||++++..
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 443 34579999999999999977654
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.26 E-value=5.2e-11 Score=117.89 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=90.8
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
+.+|||||||+|.++..++... ....|+++|.++.|++.|+++ ++ ++.+..+++..++. +++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 5799999999999999998653 356899999999999877643 44 36778888888877 679999998742
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCchhhhhhHHhHhhhhhhhhhhhccceEEeee
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~w~~l~~l~~~lcW~ll~~ 390 (642)
.+...++.++.++|||||++++...... -..+...++..+|.+..+
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~-------------~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDP-------------EEEIAELPKALGGKVEEV 167 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCCh-------------HHHHHHHHHhcCceEeee
Confidence 4567899999999999999999865321 123556677778876543
No 42
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.26 E-value=2.4e-11 Score=121.95 Aligned_cols=100 Identities=28% Similarity=0.440 Sum_probs=82.3
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
++|||||||+|.++..+++.. ...+++++|+|+++++.++++ |+ .+.+...|....|+++ +||+|++..+ +
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~-~fD~I~~~~~-l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD-TYDLVFGFEV-I 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCC-CCCEeehHHH-H
Confidence 369999999999999998874 335799999999999888764 33 3466777776667654 8999999988 5
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
++..+...+++++.++|||||++++.++.
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 56677889999999999999999998874
No 43
>PRK06922 hypothetical protein; Provisional
Probab=99.26 E-value=1.8e-11 Score=139.49 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=85.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCC--CCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lp--fpd~SFDlV~~s~~ 326 (642)
++.+|||||||+|.++..+++.. ....++|+|.|+.|++.|+++ +.+..+.++|+..+| +++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 35799999999999999888763 557899999999999988765 345566778888888 88899999999987
Q ss_pred ccccc------------ccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 327 GVDWD------------QKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 327 ll~~~------------~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
++++. .+...+|+++.|+|||||++++.+..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 44332 23467999999999999999998764
No 44
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.25 E-value=3.4e-11 Score=125.19 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=80.3
Q ss_pred CCCeEEEECCCCch----HHHHHhhcCC----ceeEEEEecCCHHHHHHHHHcC--------C-----------------
Q 006518 253 GVRTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLERG--------L----------------- 299 (642)
Q Consensus 253 ~~~~VLDIGCGtG~----~a~~La~~g~----~~~sV~giD~S~~ml~~A~erg--------l----------------- 299 (642)
...+|+|+|||+|. ++..+++... ....|+|+|+|+.|++.|++.- +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34699999999995 4555655432 2468999999999999998631 1
Q ss_pred -------CceEEeecccCCCCCCCCccEEEeccccccccc-cHHHHHHHHHhcccCCcEEEEEe
Q 006518 300 -------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 300 -------~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~-d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
.+.|.+.|....++++++||+|+|.++++++.+ +..+++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 356778888888888889999999998555532 23479999999999999999964
No 45
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.24 E-value=1.1e-11 Score=126.65 Aligned_cols=100 Identities=22% Similarity=0.280 Sum_probs=81.2
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-------C----ceEEeecccCCCCCCCCccEEE
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-------P----AMIGSFASKQLPYPSLSFDMLH 322 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl-------~----~~~~~~da~~Lpfpd~SFDlV~ 322 (642)
+++|||+|||+|.++..|++.| ..|+|+|.++.|++.|+++.- + ..+.+.+++.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceee
Confidence 4789999999999999999987 459999999999999987621 1 113333333332 3599999
Q ss_pred eccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
|+.+ ++|..++..++..+.+.|||||.+++++.....
T Consensus 164 csev-leHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 164 CSEV-LEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred eHHH-HHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 9999 777889999999999999999999999986543
No 46
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.23 E-value=4.3e-11 Score=125.09 Aligned_cols=101 Identities=24% Similarity=0.356 Sum_probs=75.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
++.+|||||||.|.++.+++++. ..+|+++.+|+++.+.++++ |+. +.+...|..+++. +||.|++..+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~ 136 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEM 136 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESE
T ss_pred CCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEec
Confidence 45899999999999999999982 35699999999999887644 553 5566667666544 8999999999
Q ss_pred ccccc-ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 327 GVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 327 ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+.|.. .+...+++++.++|||||.+++.....
T Consensus 137 ~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp GGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred hhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 66654 455789999999999999999877654
No 47
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.22 E-value=1.1e-10 Score=115.91 Aligned_cols=104 Identities=23% Similarity=0.271 Sum_probs=88.1
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEecccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~ 329 (642)
+..+|||+|||+|.++..+++.......++++|+++.+++.++++. .++.+...++..+++++++||+|+++.+ ++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~-~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFG-LR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeee-eC
Confidence 3579999999999999999887633357999999999999888764 2466777888888888889999999887 66
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 330 WDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
+..++..+++++.++|+|||++++.+..
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 6778889999999999999999987754
No 48
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.21 E-value=1.5e-10 Score=116.16 Aligned_cols=104 Identities=25% Similarity=0.242 Sum_probs=87.8
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecccCCCCCCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg------l~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
..+|||+|||+|.++..+++.+....+++++|.++.+++.++++. .++.+...++..+++++++||+|+++.+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~- 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG- 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc-
Confidence 478999999999999999887533468999999999999887752 2456777888888888889999999987
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+++..++..++.++.++|+|||.+++.+...
T Consensus 131 l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 131 LRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 6667788899999999999999999887543
No 49
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.21 E-value=7.4e-11 Score=128.87 Aligned_cols=101 Identities=25% Similarity=0.313 Sum_probs=79.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccCCCCCCCCccEEEeccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg--l~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
++.+|||||||+|.++..++++. ..+|+++|+|++|++.|+++. +.+.+...+...+ +++||.|++..++.|.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhC
Confidence 34799999999999999998763 347999999999999998763 4455565665544 4689999999874443
Q ss_pred c-ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 331 D-QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 331 ~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
. .+...+++++.++|||||++++.+...
T Consensus 242 g~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 242 GPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 2 334679999999999999999987653
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.20 E-value=3.8e-11 Score=119.83 Aligned_cols=103 Identities=23% Similarity=0.299 Sum_probs=82.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecc-cCCC--CCCCCccEEEec
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFAS-KQLP--YPSLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da-~~Lp--fpd~SFDlV~~s 324 (642)
...+|||+|||+|.++..+++.. ....++++|.++.+++.|+++ +. ++.+.+.++ +.++ +++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 34789999999999999998763 446799999999999988753 33 467788888 7777 778899999998
Q ss_pred ccccccccc--------HHHHHHHHHhcccCCcEEEEEeCC
Q 006518 325 RCGVDWDQK--------DGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 325 ~~ll~~~~d--------~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
.. ..|... ...+++++.++|||||+|+++...
T Consensus 119 ~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 119 FP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 65 444321 356899999999999999998764
No 51
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.20 E-value=5.8e-11 Score=117.13 Aligned_cols=100 Identities=23% Similarity=0.301 Sum_probs=83.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~ 332 (642)
++.+|||+|||.|.+..+|.+. ......|+|++++.+..+.++|+++.-..++..--.|++++||.|+++.+ ++...
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt-LQ~~~ 89 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT-LQAVR 89 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH-HHhHh
Confidence 4589999999999999999875 24668999999999999999999977665554322499999999999998 77778
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 333 KDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+++.+|.|+.|+ |...+++.|+-
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecCh
Confidence 899999999777 55788887754
No 52
>PRK06202 hypothetical protein; Provisional
Probab=99.16 E-value=1.9e-10 Score=116.62 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=80.7
Q ss_pred CCCeEEEECCCCchHHHHHhhc---CCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccCCCCCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~---g~~~~sV~giD~S~~ml~~A~erg--l~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
+..+|||||||+|.++..|++. .....+++++|+++.|++.|+++. .+..+...++..+++++++||+|+|+.+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~- 138 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF- 138 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe-
Confidence 4579999999999999888753 112357999999999999998763 2345666677778888889999999998
Q ss_pred ccccccH--HHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 328 VDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 328 l~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
+||.+++ ..+++++.|++| |.+++.+....
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 5666554 469999999998 66777666543
No 53
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.15 E-value=3e-10 Score=112.52 Aligned_cols=100 Identities=19% Similarity=0.224 Sum_probs=76.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEecccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~ 329 (642)
..+++||+|||.|.++..|+.+. -.++++|.++..++.|++|- ..+.+.+++.... .|+++||+|+++.+++.
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 45789999999999999999983 57999999999999999873 3566777776553 57789999999999666
Q ss_pred ccc--cHHHHHHHHHhcccCCcEEEEEeC
Q 006518 330 WDQ--KDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 330 ~~~--d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+.+ +...++..+...|+|||.+++...
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 653 235689999999999999999876
No 54
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.15 E-value=3.5e-10 Score=114.20 Aligned_cols=100 Identities=16% Similarity=0.004 Sum_probs=78.3
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CceEEeecccCCCCC-C
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-S 315 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~-ergl----------------~~~~~~~da~~Lpfp-d 315 (642)
..+|||+|||.|..+..|+++|. .|+|+|+|+.+++.+. +.++ .+.+.++|...++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 36999999999999999999985 4999999999998753 3332 456678888777643 3
Q ss_pred CCccEEEeccccccccccH-HHHHHHHHhcccCCcEEEEEeC
Q 006518 316 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 316 ~SFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+.||.|+-..+++|..++. ..++..+.++|||||++++...
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 5799999987755554333 4589999999999998666644
No 55
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.15 E-value=3e-10 Score=112.81 Aligned_cols=99 Identities=19% Similarity=0.289 Sum_probs=76.6
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHH----HHHcCCCceEEeecccCCCCCCCCccEEEecccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~----A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~ 329 (642)
+.++||+|||.|..+.+|+++|+. |+++|.|+..++. |.++++++...+.|.....++ +.||+|++..++.+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 479999999999999999999854 8999999988864 445688888888898888876 57999999877444
Q ss_pred cccc-HHHHHHHHHhcccCCcEEEEEeC
Q 006518 330 WDQK-DGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 330 ~~~d-~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
..++ ...++..|...++|||++++...
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 3333 25689999999999999998654
No 56
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.15 E-value=2.3e-10 Score=115.07 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=76.1
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEEec
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~SFDlV~~s 324 (642)
++.+|||||||+|.++..++++......|+++|+++ |. ....+.+.++|+...+ +.+++||+|+|+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 347899999999999999998754446799999987 21 1234667788887753 677899999998
Q ss_pred cccccccccH-----------HHHHHHHHhcccCCcEEEEEeCCC
Q 006518 325 RCGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 325 ~~ll~~~~d~-----------~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
.+ .++..++ ..+|.++.++|||||.|++..+..
T Consensus 125 ~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 125 MA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 65 4443221 358999999999999999987654
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.12 E-value=9.8e-10 Score=98.85 Aligned_cols=98 Identities=19% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-CCCCCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~-Lpfpd~SFDlV~~s~~l 327 (642)
..+|||+|||+|.++..++++. ...+++++|.++.+++.++++ +. ++.+...++.. ++...++||.|++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~- 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS- 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-
Confidence 3689999999999999999874 236799999999999887643 33 35566566544 3344468999999765
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.. ....+++++.++|||||+|++...
T Consensus 98 ~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 GG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 22 235799999999999999999753
No 58
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.12 E-value=4.2e-10 Score=117.40 Aligned_cols=116 Identities=22% Similarity=0.266 Sum_probs=87.6
Q ss_pred hhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCC--ceEEe
Q 006518 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP--AMIGS 305 (642)
Q Consensus 232 ~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e----rgl~--~~~~~ 305 (642)
...+.+.+.+.+.+| ++|||||||.|.++.+++++. .++|+|+++|++|.+.+++ +|+. +.+..
T Consensus 59 ~k~~~~~~kl~L~~G--------~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l 128 (283)
T COG2230 59 AKLDLILEKLGLKPG--------MTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL 128 (283)
T ss_pred HHHHHHHHhcCCCCC--------CEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEe
Confidence 344555555555544 999999999999999999983 4679999999999987765 3655 44443
Q ss_pred ecccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 306 FASKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 306 ~da~~Lpfpd~SFDlV~~s~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
.| .+...+.||-|++..++.|.. .+...+++.++++|+|||.+++.+.....
T Consensus 129 ~d---~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 129 QD---YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred cc---ccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 34 333344599999999955554 33578999999999999999998876543
No 59
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.12 E-value=5.8e-10 Score=109.78 Aligned_cols=96 Identities=24% Similarity=0.298 Sum_probs=75.8
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CceEEeecccCCCCCCCCccEEEeccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e----rgl-~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
+.+|||||||+|.++..++..+ ....|+++|.++.|++.+++ .++ ++.+..++++.++. +++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-cCCccEEEehh--h
Confidence 4799999999999999988654 34679999999999877653 344 46778888887753 56899999864 2
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.+...++..+.++|||||.+++...
T Consensus 119 ---~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3456688999999999999998753
No 60
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.11 E-value=4.1e-10 Score=112.47 Aligned_cols=103 Identities=25% Similarity=0.259 Sum_probs=83.9
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecc-cCCCCCCCCccEEEecccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da-~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
...-|||||||+|..+..|.+.| ...+|+|+|+.|++.|.++-+...+...|+ +-+||..++||.|++..+ ++|.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA-vQWL 125 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA-VQWL 125 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee-eeee
Confidence 56789999999999999998887 348899999999999998766655554453 789999999999999876 7774
Q ss_pred c-------cHH----HHHHHHHhcccCCcEEEEEeCCCC
Q 006518 332 Q-------KDG----ILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 332 ~-------d~~----~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
- ++. .++..++.+|++|+..++.....+
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 2 222 367789999999999999876543
No 61
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.08 E-value=2.1e-09 Score=104.35 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=74.6
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
..+|||+|||+|..+..+++++ ....++++|.++.+++.+++. ++. +.+...|... +.++++||+|+|+-- +
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP-~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPP-F 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE----S
T ss_pred CCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccc-h
Confidence 3789999999999999999885 445699999999999888653 455 5566555432 344689999999966 3
Q ss_pred ccccc-----HHHHHHHHHhcccCCcEEEEEeC
Q 006518 329 DWDQK-----DGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 329 ~~~~d-----~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+...+ ...++.+..+.|||||.+++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 33322 35689999999999999977554
No 62
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.07 E-value=2.1e-10 Score=116.05 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC------CceEEeecccCCCCCCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL------PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl------~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
.+.++|+|||+|..+..+++.. -+|+++|+|++|+++|++.-. +......+...|--.++|.|+|+|..|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa- 109 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA- 109 (261)
T ss_pred cceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh-
Confidence 4589999999997777777762 469999999999999987532 122222222333334899999999999
Q ss_pred ccccccHHHHHHHHHhcccCCc-EEEEE
Q 006518 328 VDWDQKDGILLLEVDRVLKPGG-YFVWT 354 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG-~Lvis 354 (642)
+||.+ .+++++++.|+||+.| .+++=
T Consensus 110 ~HWFd-le~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 110 VHWFD-LERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred HHhhc-hHHHHHHHHHHcCCCCCEEEEE
Confidence 99974 5679999999999866 65553
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.07 E-value=2.6e-09 Score=104.18 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=77.1
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~ 329 (642)
..+|||+|||+|.++..+++.+. +++++|.++.+++.++++ +..+.+...|....+ .++||+|+++...++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 36899999999999999998863 799999999999888764 455666666765543 458999999976333
Q ss_pred cccc--------------------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 330 WDQK--------------------DGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 330 ~~~d--------------------~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
..+. ...++.++.++|||||.+++..+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 2211 2457999999999999999987644
No 64
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.06 E-value=5.1e-10 Score=110.89 Aligned_cols=102 Identities=23% Similarity=0.287 Sum_probs=80.9
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC---CCCCCccEEEecc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP---YPSLSFDMLHCAR 325 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lp---fpd~SFDlV~~s~ 325 (642)
..+|||||||+|.++..++++. ....++++|.++.+++.|+++ ++ ++.+..+|+..++ +++++||.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3689999999999999999874 456899999999999887643 33 5677888887654 5667999999886
Q ss_pred ccccccccH--------HHHHHHHHhcccCCcEEEEEeCC
Q 006518 326 CGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 326 ~ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
. .+|.... ..++.++.|+|||||.|++....
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 5 4553221 46899999999999999998654
No 65
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.05 E-value=1.9e-09 Score=107.86 Aligned_cols=95 Identities=18% Similarity=0.067 Sum_probs=72.8
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
..+|||||||+|..+..+++.......|+++|.++++++.|+++ +. .+.+..+|.........+||+|++..+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 151 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA- 151 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccC-
Confidence 47999999999999999887532234799999999999888753 33 256777787665445678999999976
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEe
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
.++. ..++.++|||||++++..
T Consensus 152 ~~~~------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 ASTI------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cchh------hHHHHHhcCcCcEEEEEE
Confidence 3322 247889999999998864
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.04 E-value=1.6e-09 Score=109.48 Aligned_cols=102 Identities=18% Similarity=0.343 Sum_probs=83.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCC-CCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lp-fpd~SFDlV~~s~~l 327 (642)
+..+|||||||+|.++..+++.+ ..++++|+++.+++.++++ +....+...+....+ ..+++||+|++..+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~- 123 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM- 123 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH-
Confidence 35789999999999999998875 4599999999999888764 445556666666654 34578999999987
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+++.+++..++.++.++|+|||.++++.+..
T Consensus 124 l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 124 LEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 6666788889999999999999999988753
No 67
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.03 E-value=1.2e-09 Score=109.83 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C--CceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg----l--~~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
+..+|||+|||+|.++..+++.+ ..++|+|++++|++.|+++. . ++.+.+.++..++ ++||+|++..+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 45799999999999999999874 46999999999999887652 2 4667777777765 68999999988
Q ss_pred ccccc-ccHHHHHHHHHhcccCCcEEEEE
Q 006518 327 GVDWD-QKDGILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 327 ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis 354 (642)
++++. ++...++.++.+++++++++.+.
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 55553 23467899999999987776654
No 68
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.02 E-value=2.7e-09 Score=115.08 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=76.3
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEeccccccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
.+|||+|||+|.++..+++++ ...+++++|+++.+++.|++ .++...+...|... ..++.||+|+|+.. +|.
T Consensus 198 g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPP-FH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPP-FHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCC-ccC
Confidence 579999999999999999874 34679999999999988764 34555565555433 23578999999987 554
Q ss_pred c-----ccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 331 D-----QKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 331 ~-----~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
. ...+.++.++.+.|||||.|++...
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 2235799999999999999998764
No 69
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.01 E-value=1.7e-09 Score=106.91 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=75.3
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC-C-CCCCCCccEEEecccccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-L-PYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~-L-pfpd~SFDlV~~s~~ll~~~ 331 (642)
..+|||||||+|.++..+++.. ...++++|+++++++.++++++ .+..+++.. + ++++++||+|+|+.+ +++.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~-l~~~ 88 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQT-LQAT 88 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhH-hHcC
Confidence 3689999999999999997653 2357899999999999987765 445566654 4 477889999999988 6777
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 332 QKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
+++..+++++.|+++ ..+++.+.
T Consensus 89 ~d~~~~l~e~~r~~~---~~ii~~p~ 111 (194)
T TIGR02081 89 RNPEEILDEMLRVGR---HAIVSFPN 111 (194)
T ss_pred cCHHHHHHHHHHhCC---eEEEEcCC
Confidence 888899999988765 44555543
No 70
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.01 E-value=2.1e-09 Score=107.70 Aligned_cols=102 Identities=20% Similarity=0.329 Sum_probs=84.1
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCC-CCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP-SLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfp-d~SFDlV~~s~~ 326 (642)
...+|||+|||+|.++..+++.+ ..++++|.++.+++.++++ +. ++.+...++..++.. .++||+|++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 35789999999999999998875 3489999999999888764 34 466777777766654 378999999987
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+++..++..++.++.++|+|||.++++++..
T Consensus 122 -l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 122 -LEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -HHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 6777888899999999999999999987654
No 71
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=2.4e-09 Score=107.74 Aligned_cols=95 Identities=15% Similarity=0.039 Sum_probs=74.1
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
..+|||||||+|.++..+++......+|+++|.++++++.|+++ +. ++.+..+|+.....+.+.||+|++... .
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~-~ 155 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA-G 155 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCC-c
Confidence 47999999999999999987632345799999999999988764 33 467788887766666789999999865 3
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEe
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
+. ....+.+.|||||++++..
T Consensus 156 ~~------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 156 PD------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cc------chHHHHHhhCCCcEEEEEE
Confidence 22 2346677899999999853
No 72
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.00 E-value=2.8e-09 Score=107.15 Aligned_cols=96 Identities=20% Similarity=0.112 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
+..+|||||||+|.++..|++.......|+++|.++++++.|+++ ++ ++.+..+|..........||+|++...
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA- 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC-
Confidence 347999999999999999988743345699999999999988754 43 466777777665444568999998765
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEe
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
.. .+...+.+.|||||++++..
T Consensus 156 ~~------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 GP------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cc------cccHHHHHhcCcCcEEEEEE
Confidence 22 23456788999999999864
No 73
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.99 E-value=2.8e-09 Score=111.81 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=79.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHH--HHHc--CCCc--eEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL--TLER--GLPA--MIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~--A~er--gl~~--~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
.+++|||||||.|.++..|+.+|. ..|+|+|++.-..-. +.++ |... ...-..++.+|. .++||+|+|..+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 458999999999999999999874 469999998765422 1122 2222 233357888988 789999999999
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
++| ..+|-..|.+++..|+|||.+++.+...
T Consensus 192 LYH-rr~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 192 LYH-RRSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred hhc-cCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 666 5788889999999999999999877643
No 74
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.99 E-value=3.4e-09 Score=111.49 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=73.8
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~ 329 (642)
..+|||+|||+|.++..+++.+. .+++++|+++.+++.|+++ ++...+........+..+++||+|+++.. .
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~-~- 235 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL-A- 235 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC-H-
Confidence 47999999999999999887753 4799999999999988764 33322221111123445678999999854 2
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
.....++.++.++|||||+++++....
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 223568999999999999999998753
No 75
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.98 E-value=4.3e-09 Score=106.69 Aligned_cols=98 Identities=15% Similarity=-0.001 Sum_probs=75.6
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH-HHcCC----------------CceEEeecccCCCCC-C
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT-LERGL----------------PAMIGSFASKQLPYP-S 315 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A-~ergl----------------~~~~~~~da~~Lpfp-d 315 (642)
..+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+ +++++ .+.+.++|...++.. .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 36999999999999999999975 499999999999876 34443 245567777777533 2
Q ss_pred CCccEEEeccccccccccH-HHHHHHHHhcccCCcEEEEE
Q 006518 316 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 316 ~SFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis 354 (642)
..||+|+-..++++..++. ..++..+.++|||||++++.
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 5899999887755544333 46999999999999975543
No 76
>PLN03075 nicotianamine synthase; Provisional
Probab=98.97 E-value=4.4e-09 Score=110.83 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=80.3
Q ss_pred CCCeEEEECCCCchHHHHHh-hcCCceeEEEEecCCHHHHHHHHHc-----CC--CceEEeecccCCCCCCCCccEEEec
Q 006518 253 GVRTILDIGCGYGSFGAHLF-SKELLTMCIANYEASGSQVQLTLER-----GL--PAMIGSFASKQLPYPSLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La-~~g~~~~sV~giD~S~~ml~~A~er-----gl--~~~~~~~da~~Lpfpd~SFDlV~~s 324 (642)
.+++|+|||||.|.++..++ ....+...++++|.++++++.|++. ++ .+.|..+|+...+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 56899999999886654443 3334567899999999999988754 22 3678888877764345689999999
Q ss_pred ccccccc-ccHHHHHHHHHhcccCCcEEEEEe
Q 006518 325 RCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 325 ~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
++++|. ++..+++..+.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 767774 677889999999999999999986
No 77
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.97 E-value=2.7e-10 Score=114.39 Aligned_cols=101 Identities=23% Similarity=0.335 Sum_probs=83.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC-CC-CCCCCccEEEeccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-LP-YPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~-Lp-fpd~SFDlV~~s~~ll~~ 330 (642)
..+++||+|||||.++..|... ...++|+|+|++|++.|.++|+--...++++.. ++ ..++.||+|++..+ +.+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l~Y 200 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-LPY 200 (287)
T ss_pred ccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH-HHh
Confidence 3689999999999999999766 345899999999999999999755555555542 33 45678999999999 556
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 331 DQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
.-+.+.++.-+...|+|||.|.||.-.
T Consensus 201 lG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 201 LGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred hcchhhHHHHHHHhcCCCceEEEEecc
Confidence 667788999999999999999999753
No 78
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.96 E-value=8.3e-09 Score=101.27 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
...+|||||||+|.++..+++++ ...+++++|.++.+++.|+++ ++ .+.+...++. .+++ ++||+|++...
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~- 106 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS- 106 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-
Confidence 34789999999999999998874 446899999999999888653 33 3455555543 3343 57999999865
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
.. ....++.++.++|+|||++++....
T Consensus 107 ~~---~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 107 GG---NLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred cc---CHHHHHHHHHHhcCCCeEEEEEEec
Confidence 22 3456899999999999999997653
No 79
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.95 E-value=5.6e-09 Score=110.34 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=79.9
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
+..+|||||||+|.++..++++. +..+++++|. +.+++.++++ ++ .+.+..+|+...++++ +|+|+++.+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhh
Confidence 45799999999999999999885 4567899997 6788877543 44 3556777876666654 799999988
Q ss_pred cccccccH-HHHHHHHHhcccCCcEEEEEeCCC
Q 006518 327 GVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 327 ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+++|.++. ..+|++++++|||||++++.+...
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 56565433 569999999999999999998644
No 80
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.95 E-value=1.9e-09 Score=103.74 Aligned_cols=77 Identities=18% Similarity=0.103 Sum_probs=67.0
Q ss_pred EEecCCHHHHHHHHHcC--------CCceEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCcEEEE
Q 006518 282 ANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 353 (642)
Q Consensus 282 ~giD~S~~ml~~A~erg--------l~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvi 353 (642)
+|+|+|++|++.|+++. .++.+.++|++++|+++++||+|++.++ +++.++...+|+|++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG-LRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecch-hhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 47999999999996542 1467899999999999999999999988 67778889999999999999999999
Q ss_pred EeCCCC
Q 006518 354 TSPLTN 359 (642)
Q Consensus 354 s~p~~~ 359 (642)
.+....
T Consensus 80 ~d~~~~ 85 (160)
T PLN02232 80 LDFNKS 85 (160)
T ss_pred EECCCC
Confidence 987643
No 81
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.95 E-value=5.2e-09 Score=114.03 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=74.2
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC----CceEEeecccCCCCCCCCccEEEeccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl----~~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
.+|||+|||+|.++..+++++ +..+|+++|.|+.+++.|+++ +. .+.+...|... .+++++||+|+|+-.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 589999999999999999875 457899999999999988764 22 23444444322 234568999999876
Q ss_pred cccccc----c-HHHHHHHHHhcccCCcEEEEEe
Q 006518 327 GVDWDQ----K-DGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 327 ll~~~~----d-~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
+|... + ..+++.++.++|||||.|++..
T Consensus 308 -fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 -FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 44321 1 2468999999999999999985
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.94 E-value=4.9e-09 Score=114.20 Aligned_cols=101 Identities=25% Similarity=0.347 Sum_probs=81.6
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCC--CCCCCCccEEEeccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL--PYPSLSFDMLHCARC 326 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~L--pfpd~SFDlV~~s~~ 326 (642)
...+||||||+|.++..++.+. +...++|+|+++.+++.|.++ ++ ++.+..+|+..+ .+++++||.|++.+.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4689999999999999999885 557899999999998776543 44 566778887654 578899999998865
Q ss_pred cccccccH------HHHHHHHHhcccCCcEEEEEeC
Q 006518 327 GVDWDQKD------GILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 327 ll~~~~d~------~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
..|.... ..++.++.|+|+|||.+.+.+-
T Consensus 202 -dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 -VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred -CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5664332 4699999999999999999754
No 83
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.94 E-value=7e-09 Score=109.82 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=75.9
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------CCCceEEeecccC-CCCCCCC---cc-EEE
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQ-LPYPSLS---FD-MLH 322 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er------gl~~~~~~~da~~-Lpfpd~S---FD-lV~ 322 (642)
+.+|||+|||+|..+..|++......+++++|+|++|++.++++ ++++...++|+.+ ++++... .+ +++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 46899999999999999998743246799999999999888764 2445567788765 4444432 23 344
Q ss_pred ecccccccccc--HHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 323 CARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 323 ~s~~ll~~~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
+..+ +++.+. ...+|++++++|+|||.|+|.......
T Consensus 144 ~gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 144 PGST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred eccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 3344 444433 346999999999999999997665443
No 84
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.93 E-value=2.6e-09 Score=95.90 Aligned_cols=100 Identities=25% Similarity=0.400 Sum_probs=78.5
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC--CCCCCccEEEeccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCARC 326 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lp--fpd~SFDlV~~s~~ 326 (642)
.+|||+|||+|.++..+++.+ ..+++++|+++..++.++++ +. ++.+.+.|..... +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 589999999999999999886 57799999999999988764 22 4678888887775 78899999999866
Q ss_pred cccccc-------cHHHHHHHHHhcccCCcEEEEEeC
Q 006518 327 GVDWDQ-------KDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 327 ll~~~~-------d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
...... ....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 332211 124689999999999999998764
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.92 E-value=5.7e-09 Score=107.50 Aligned_cols=94 Identities=23% Similarity=0.333 Sum_probs=69.8
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
+..+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++...+ .++..+.+||+|+++.. .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~-~ 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANIL-A 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCc-H
Confidence 457999999999999998887763 3599999999999988765 221111 12222237999999743 1
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
.....++.++.++|||||++++++...
T Consensus 190 ---~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 190 ---NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred ---HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 223568899999999999999998753
No 86
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.91 E-value=8.4e-09 Score=87.11 Aligned_cols=96 Identities=26% Similarity=0.346 Sum_probs=75.5
Q ss_pred eEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---C--CCceEEeecccCCCC-CCCCccEEEecccccc
Q 006518 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G--LPAMIGSFASKQLPY-PSLSFDMLHCARCGVD 329 (642)
Q Consensus 256 ~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er---g--l~~~~~~~da~~Lpf-pd~SFDlV~~s~~ll~ 329 (642)
+|||+|||+|.++..+++. ...+++++|.++.+++.+++. + ....+...+...... ..++||+|++..+ ++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc-ee
Confidence 4899999999999999883 356799999999999887721 1 234556666665553 5578999999988 55
Q ss_pred c-cccHHHHHHHHHhcccCCcEEEEE
Q 006518 330 W-DQKDGILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 330 ~-~~d~~~~L~Ei~RvLKPGG~Lvis 354 (642)
+ ......++..+.+.|||||.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 556678999999999999999986
No 87
>PRK04266 fibrillarin; Provisional
Probab=98.90 E-value=8.4e-09 Score=105.12 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=70.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCceEEeecccCC----CCCCCCccEEEecc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQL----PYPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er---gl~~~~~~~da~~L----pfpd~SFDlV~~s~ 325 (642)
++.+|||+|||+|.++..+++... ...|+++|.++.|++.+.++ ..++.+..+|+... +++ ++||+|++..
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 347999999999999999988732 35799999999988754332 13455666676531 233 4699998653
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
. .. .....++.++.|+|||||+++++.+
T Consensus 150 ~-~p--~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 150 A-QP--NQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred C-Ch--hHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 2 11 1123578999999999999999644
No 88
>PRK14967 putative methyltransferase; Provisional
Probab=98.89 E-value=2.2e-08 Score=101.28 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~ 329 (642)
..+|||+|||+|.++..+++.+. .+++++|.++.+++.++++ +.++.+...|... .+++++||+|+++.....
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 47999999999999999988652 4799999999999877653 4556666666654 356678999999853221
Q ss_pred ccc--------------------cHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 330 WDQ--------------------KDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 330 ~~~--------------------d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
... ....++.++.++|||||.+++....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 111 0245788899999999999986543
No 89
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.88 E-value=1.7e-08 Score=107.63 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=67.7
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCceEEeecccCCCCCCCCccEEEe
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQLPYPSLSFDMLHC 323 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg----------l~~~~~~~da~~Lpfpd~SFDlV~~ 323 (642)
+.+|||||||+|.++..+++++ ..|+++|+|+.|++.|+++. ..+.+...|.+.+ +++||+|+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 4799999999999999999886 46999999999999987762 1344555555433 578999999
Q ss_pred ccccccccccH-HHHHHHHHhcccCCcEEEEEe
Q 006518 324 ARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 324 s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
..+++|+.++. ..+++.+.+ +.+||. +++.
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~ 249 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRL-IISF 249 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe
Confidence 99866654332 235666664 455555 4444
No 90
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.87 E-value=1.9e-08 Score=99.81 Aligned_cols=100 Identities=20% Similarity=0.180 Sum_probs=75.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC-CCCCCCccEEEecc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-PYPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~L-pfpd~SFDlV~~s~ 325 (642)
+..+|||+|||+|.++..++.......+++++|.++.+++.++++ ++ ++.+...++... +..++.||+|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 447999999999999998876522345799999999999987654 42 455666676543 33346899999864
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
. ..+...++.++.++|||||++++...
T Consensus 120 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 120 G----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred C----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 2 24567899999999999999998654
No 91
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.6e-08 Score=104.51 Aligned_cols=130 Identities=20% Similarity=0.308 Sum_probs=93.0
Q ss_pred cccccccccccc--cchhhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHH
Q 006518 216 EQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 293 (642)
Q Consensus 216 ~~~~F~~~~~~y--d~~~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~ 293 (642)
..+.|......| +..+.-.+.+.+.++...+ .+|||+|||.|.++..+++.. +...++-+|.+...++.
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~--------~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ 197 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLLLETLPPDLG--------GKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVES 197 (300)
T ss_pred CceEEEeCCCCCcCCCcChHHHHHHHhCCccCC--------CcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHH
Confidence 344566666666 3444445666676664443 489999999999999999986 46789999999999998
Q ss_pred HHHc----CCCceEEeecccCCCCCCCCccEEEecccccccccc-HH----HHHHHHHhcccCCcEEEEEeC
Q 006518 294 TLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK-DG----ILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 294 A~er----gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d-~~----~~L~Ei~RvLKPGG~Lvis~p 356 (642)
|++. ++....+..+....+.++ +||+|+|+-- +|-..+ .. +++.+..+.|++||.|.|..-
T Consensus 198 ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPP-fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 198 ARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPP-FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHHhHHHcCCCccEEEEecccccccc-cccEEEeCCC-ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 8754 444422223334445555 8999999977 443222 22 689999999999999999866
No 92
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.86 E-value=1.9e-08 Score=100.96 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=69.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
+..+|||||||+|.++..|++.+ ..++++|.++.|++.|+++ +. .+.+..++ ++..+++||+|++..+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 34799999999999999999876 3499999999999998765 22 34555555 4555688999999988
Q ss_pred cccccc-cHHHHHHHHHhcccCCcEE
Q 006518 327 GVDWDQ-KDGILLLEVDRVLKPGGYF 351 (642)
Q Consensus 327 ll~~~~-d~~~~L~Ei~RvLKPGG~L 351 (642)
++|+.+ +...+++++.+++++++.+
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 555432 2356888888877654443
No 93
>PTZ00146 fibrillarin; Provisional
Probab=98.85 E-value=3.6e-08 Score=103.74 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHH----HHHHHHHcCCCceEEeecccC---CCCCCCCccEEEecc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----QVQLTLERGLPAMIGSFASKQ---LPYPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~----ml~~A~ergl~~~~~~~da~~---Lpfpd~SFDlV~~s~ 325 (642)
+..+|||+|||+|.++..+++..-....|+++|+++. +++.++++ .++.+...|+.. ......+||+|++..
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 4579999999999999999987433457999999986 44555544 345556666543 222345899999986
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
. . .++...++.++.++|||||+|++...
T Consensus 211 a-~--pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 211 A-Q--PDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred C-C--cchHHHHHHHHHHhccCCCEEEEEEe
Confidence 4 2 22334577799999999999999543
No 94
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.84 E-value=3.8e-10 Score=111.57 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=129.8
Q ss_pred cccccccccccccccccchhhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHH
Q 006518 212 MLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV 291 (642)
Q Consensus 212 ~~dk~~~~F~~~~~~yd~~~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml 291 (642)
+...+...|-+.++||-...+ ++++++..... .|. ..+.++||+|+|.|..+..++.. ..+|.+.+.|..|.
T Consensus 76 ms~TdING~lgrGsMFifSe~---QF~klL~i~~p-~w~-~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr 147 (288)
T KOG3987|consen 76 MSQTDINGFLGRGSMFIFSEE---QFRKLLVIGGP-AWG-QEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMR 147 (288)
T ss_pred hhhhccccccccCceEEecHH---HHHHHHhcCCC-ccC-CCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHH
Confidence 344455588888888865544 56666665432 232 23479999999999999999875 24488899999999
Q ss_pred HHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccC-CcEEEEEeCCCCchhhhhhHH--
Q 006518 292 QLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKP-GGYFVWTSPLTNPQAFLRNKE-- 368 (642)
Q Consensus 292 ~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKP-GG~Lvis~p~~~~~~~lr~~e-- 368 (642)
...++++-++. .+.+..-.+-+||+|.|.+. +.-..++.++|..++.+|+| .|.++++-..+.. +..|
T Consensus 148 ~rL~kk~ynVl----~~~ew~~t~~k~dli~clNl-LDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~----hYVE~N 218 (288)
T KOG3987|consen 148 DRLKKKNYNVL----TEIEWLQTDVKLDLILCLNL-LDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYM----HYVETN 218 (288)
T ss_pred HHHhhcCCcee----eehhhhhcCceeehHHHHHH-HHhhcChHHHHHHHHHHhccCCCcEEEEEEeccc----ceeecC
Confidence 99998875543 22333334457999999987 66678889999999999999 8999988665543 1222
Q ss_pred hHhhhhhhhhhhhccceEEeeecCce-EEEEecCcccccccCCCCCCCCCCCCCCCCCCCccccCCc
Q 006518 369 NQKRWNFVRDFVENLCWELVSQQDET-VVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQP 434 (642)
Q Consensus 369 ~~~~w~~l~~l~~~lcW~ll~~~~~~-~IwqK~~~~~C~~~R~~~~~p~lC~~~~d~~~~wY~~l~~ 434 (642)
-...|.+.+.+++..+-....+...+ -+.++ .-|..-...+.|++|+ +|++..+|+-.+.
T Consensus 219 ~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~----~g~~veawTrlPYLCE--GDm~ns~Y~L~Da 279 (288)
T KOG3987|consen 219 TSGLPLRPDNLLENNGRSFEEEVARFMELLRN----CGYRVEAWTRLPYLCE--GDMHNSFYWLIDA 279 (288)
T ss_pred CCCCcCCchHHHHhcCccHHHHHHHHHHHHHh----cCchhhhhhcCCeecc--cccccceEEecce
Confidence 11345555555543332111111000 01111 1222234566799999 8999999994443
No 95
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.84 E-value=4.3e-08 Score=99.63 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=74.9
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
..+|||+|||+|.++..+++.. ....++++|.++.+++.|+++ ++. +.+..++... ++++++||+|+++....
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 3689999999999999999863 345799999999999888653 443 5677777655 56678999999964311
Q ss_pred c------cccc-------------------HHHHHHHHHhcccCCcEEEEEe
Q 006518 329 D------WDQK-------------------DGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 329 ~------~~~d-------------------~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
. +..+ ...++.++.++|+|||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1 0000 1257889999999999999965
No 96
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=1.2e-08 Score=103.34 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=95.5
Q ss_pred ccchhhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCC-ceeEEEEecCCHHHHHHHHHcCC------
Q 006518 227 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKEL-LTMCIANYEASGSQVQLTLERGL------ 299 (642)
Q Consensus 227 yd~~~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~-~~~sV~giD~S~~ml~~A~ergl------ 299 (642)
|....-..+.+.+++..... ...+||+||||.|.....+++... ....+.+.|.|+.+++..+++..
T Consensus 51 fkdR~wL~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~ 124 (264)
T KOG2361|consen 51 FKDRNWLLREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRV 124 (264)
T ss_pred cchhHHHHHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhh
Confidence 33334445556666554333 334899999999999999987631 23789999999999998876531
Q ss_pred CceEEeecccC--CCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCcEEEEEeCCCCchhhhhh
Q 006518 300 PAMIGSFASKQ--LPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN 366 (642)
Q Consensus 300 ~~~~~~~da~~--Lpfpd~SFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~ 366 (642)
.+.+..++... -|.+.+++|.|++.+++....++. ..++.+++++|||||.+++.|.+......+|.
T Consensus 125 ~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF 194 (264)
T KOG2361|consen 125 EAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF 194 (264)
T ss_pred cccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence 22233333333 356778999999999866655444 56999999999999999999998877655543
No 97
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.83 E-value=2.5e-08 Score=98.07 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEEec
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~SFDlV~~s 324 (642)
++.+|||+|||+|.++..++++......++++|+++.+ ....+.+..+|+.+.+ +++++||+|++.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 35799999999999999998775344579999999864 1123456666765543 456789999986
Q ss_pred cccc---cccc-------cHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 325 RCGV---DWDQ-------KDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 325 ~~ll---~~~~-------d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
.+.. +|.. ....++.++.++|+|||++++..+.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 4311 1111 1256899999999999999997653
No 98
>PRK14968 putative methyltransferase; Provisional
Probab=98.82 E-value=4.8e-08 Score=94.66 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=74.8
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---ceEEeecccCCCCCCCCccEEEecc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLPYPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~---~~~~~~da~~Lpfpd~SFDlV~~s~ 325 (642)
+..+|||+|||+|.++..+++++ .+++++|.++.+++.++++ +.. +.+...|... ++.+++||+|+++.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNP 98 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECC
Confidence 34789999999999999999873 5699999999999888653 332 5566666543 45556899999875
Q ss_pred cccccc--------------------ccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 326 CGVDWD--------------------QKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 326 ~ll~~~--------------------~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
...... .....+++++.++|||||.+++..+.
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 522210 11245799999999999999887653
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.82 E-value=4.1e-08 Score=105.16 Aligned_cols=102 Identities=21% Similarity=0.154 Sum_probs=79.4
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEecccc-
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG- 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~SFDlV~~s~~l- 327 (642)
+.+|||+|||+|.++..++..+ ..++|+|+++.|++.|+++ ++. +.+..+|+.++|+++++||+|+++.-.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 4789999999999988877654 4689999999999877643 443 467788999999988899999996321
Q ss_pred ----ccc--c-ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 328 ----VDW--D-QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 328 ----l~~--~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
... . .....++.++.++|||||++++..+..
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 110 1 113579999999999999999987753
No 100
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.6e-08 Score=106.45 Aligned_cols=98 Identities=23% Similarity=0.357 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCc--eEEeecccCCCCCC-CCccEEEecc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPA--MIGSFASKQLPYPS-LSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~--~~~~~da~~Lpfpd-~SFDlV~~s~ 325 (642)
++++|||+|||+|.++...++.|. ..+.|+|+++-.++.|+++ +++. .....+ .+..+. +.||+|+++-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~--~~~~~~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFL--LLEVPENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhccccc--chhhcccCcccEEEehh
Confidence 468999999999999999999874 4699999999999888764 4442 111111 222333 5899999995
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
.+ +-...+..++.+.|||||++++|....
T Consensus 238 LA----~vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 238 LA----EVLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred hH----HHHHHHHHHHHHHcCCCceEEEEeehH
Confidence 31 113578899999999999999998753
No 101
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.78 E-value=8.6e-09 Score=103.55 Aligned_cols=110 Identities=18% Similarity=0.236 Sum_probs=96.6
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCceEEeecccCCCCCCCCccEEEeccccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er---gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
...++|||||.|.....|...+ +..++-+|.|..|++.++.. ++.....+.|.+.|+|.+++||+|+++.. +||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-lHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-LHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh-hhh
Confidence 4679999999999999999887 45688899999999988754 45566778899999999999999999988 999
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCCCCchhhhhh
Q 006518 331 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN 366 (642)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~ 366 (642)
..+....+.+++..|||+|.|+-+..+...++++|-
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~ 185 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRC 185 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHH
Confidence 999999999999999999999999888877766654
No 102
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.76 E-value=6.7e-08 Score=95.64 Aligned_cols=99 Identities=20% Similarity=0.138 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-CCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~-Lpfpd~SFDlV~~s~~ 326 (642)
...+|||+|||+|.++..+++.. ....++++|.++.+++.++++ ++ ++.+...++.. ++.....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 34799999999999999998653 346799999999999888753 33 35566666543 222223467765432
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
..+...++.++.++|+|||++++..+.
T Consensus 118 ----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 ----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred ----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234567999999999999999998764
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.75 E-value=9.7e-08 Score=95.56 Aligned_cols=94 Identities=19% Similarity=0.078 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
+..+|||||||+|.++..+++.. ..++++|.++++++.|+++ ++ ++.+...+......+.++||+|++..+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~- 153 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA- 153 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC-
Confidence 34799999999999999888764 3689999999999888764 33 356666665433223478999999865
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.+. +..++.+.|+|||.+++...
T Consensus 154 ~~~------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APE------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chh------hhHHHHHhcCCCcEEEEEEc
Confidence 322 34567899999999999765
No 104
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.72 E-value=1.5e-07 Score=98.99 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=74.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
..+|||+|||+|.++..++++. ....++++|+|+.+++.|+++ ++ .+.+..+|+.. ++++++||+|+++--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 4689999999999999999864 346799999999999888754 44 35667777533 3455689999997221
Q ss_pred c------------cccc--------c----HHHHHHHHHhcccCCcEEEEEeC
Q 006518 328 V------------DWDQ--------K----DGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 328 l------------~~~~--------d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+ ++.+ + ...++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 0000 0 13578899999999999998654
No 105
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.71 E-value=3.5e-08 Score=104.33 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
++.+|||||||+|.++...++.|. ..|+++|+++..++.|+++ ++...+.... ......+.||+|+++-. .
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~-~ 235 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANIL-A 235 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES--H
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCC-H
Confidence 457999999999999999999874 4689999999999887754 5555443322 22334589999999844 1
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+-...++..+.++|+|||++++|....
T Consensus 236 ---~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 236 ---DVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp ---HHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred ---HHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 123468888999999999999998853
No 106
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=7.2e-08 Score=106.90 Aligned_cols=105 Identities=18% Similarity=0.301 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCC--CCCCCccEEEecc-
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCAR- 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lp--fpd~SFDlV~~s~- 325 (642)
++.+|||+|||+|..+..++++.. ...|+++|.++.+++.++++ |+.+.+..+|+..++ +++++||.|++..
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 447999999999999999998752 25799999999999887654 556677778887654 3467899999532
Q ss_pred ---cc-c------ccccc----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 326 ---CG-V------DWDQK----------DGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 326 ---~l-l------~~~~d----------~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
.. + .|... ...+|.++.++|||||++++++...
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 10 1 11111 1358999999999999999998644
No 107
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.68 E-value=2e-07 Score=95.13 Aligned_cols=100 Identities=15% Similarity=-0.017 Sum_probs=81.4
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH-----------------cCCCceEEeecccCCCCC--
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-----------------RGLPAMIGSFASKQLPYP-- 314 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e-----------------rgl~~~~~~~da~~Lpfp-- 314 (642)
..+||+.|||.|.-+..|+++|.. |+|+|+|+..++.+.+ ++..+.+.++|..+++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 479999999999999999999864 9999999999988654 234667888898888642
Q ss_pred -CCCccEEEeccccccccccH-HHHHHHHHhcccCCcEEEEEeC
Q 006518 315 -SLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 315 -d~SFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.+.||+|+-..+++++.++. .++.+.+.++|+|||.+++...
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 25799999877766665444 4699999999999999887765
No 108
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.68 E-value=1.4e-07 Score=104.61 Aligned_cols=106 Identities=16% Similarity=0.167 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceE--EeecccCCCC--CCCCccEEEe-
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--GSFASKQLPY--PSLSFDMLHC- 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~--~~~da~~Lpf--pd~SFDlV~~- 323 (642)
++.+|||+|||+|..+..+++... ...++++|.++.+++.++++ |+.+.+ ..++....++ ++++||.|++
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 347999999999999999988632 46799999999999877644 555333 4455544443 5678999995
Q ss_pred ---cc-cccccccc----------------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 324 ---AR-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 324 ---s~-~ll~~~~d----------------~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
+. ..++..++ ...+|.++.++|||||++++++....
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 22 22332222 24689999999999999999987654
No 109
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.67 E-value=1.7e-07 Score=100.34 Aligned_cols=96 Identities=17% Similarity=0.067 Sum_probs=71.7
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
..+|||||||+|.++..+++.......|+++|.++++++.|+++ +. ++.+..+|....+...++||+|++... .
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g-~ 159 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG-V 159 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc-h
Confidence 47999999999999999987642224589999999999888753 44 356677777666555568999998754 2
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
. .....+.+.|+|||.+++...
T Consensus 160 ~------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 160 D------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred H------HhHHHHHHhcCCCCEEEEEeC
Confidence 2 123456789999999988653
No 110
>PRK00811 spermidine synthase; Provisional
Probab=98.66 E-value=2.8e-07 Score=96.94 Aligned_cols=102 Identities=18% Similarity=0.104 Sum_probs=76.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCceEEeecccC-CCCCCCCccEE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQ-LPYPSLSFDML 321 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg----------l~~~~~~~da~~-Lpfpd~SFDlV 321 (642)
.+++||+||||+|..+..++++. ...+|+.+|+++.+++.|++.- .++.+...|+.. +...+++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45799999999999999998762 3457999999999999998641 234566667544 23356789999
Q ss_pred EeccccccccccH----HHHHHHHHhcccCCcEEEEEeC
Q 006518 322 HCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 322 ~~s~~ll~~~~d~----~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
++... -++.+.. ..+++++.+.|+|||.+++...
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 98743 3332221 4578999999999999998644
No 111
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.65 E-value=1.2e-07 Score=92.59 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=80.6
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCC--ceEEeecccCCCCCCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~----ergl~--~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
..+|||+|||.|.+...|++.+++ ..++|+|.|+.+++.|+ +++.+ +.|.++|+..-.+..+.||+|+--..+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 349999999999999999999865 34899999999998764 34554 778899988877888899999864331
Q ss_pred --cccccc-----HHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 328 --VDWDQK-----DGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 328 --l~~~~d-----~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+...++ +..++..+.++|+|||+|+|..-+-
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 112211 1247889999999999999987653
No 112
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.64 E-value=2e-07 Score=103.64 Aligned_cols=107 Identities=22% Similarity=0.161 Sum_probs=80.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC----CCCCCccEEEe
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP----YPSLSFDMLHC 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lp----fpd~SFDlV~~ 323 (642)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ |+ ++.+...|+..++ +..++||.|++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 447999999999999999988632345799999999999877653 54 4567778887776 45678999996
Q ss_pred c----c-cccccccc----------------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 324 A----R-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 324 s----~-~ll~~~~d----------------~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
. . ..++..++ ...+|.++.++|||||++++++-...
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 3 1 11222222 24689999999999999999876543
No 113
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.64 E-value=1.9e-07 Score=96.45 Aligned_cols=101 Identities=17% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----CCceEEeecccCCCCCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg-----l~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
+..+|||+|||+|.++..++... ....++++|+++.+++.|+++. .++.+...|... ++++++||+|+++...
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPY 185 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCc
Confidence 34689999999999999998874 3467999999999999887652 245566666532 3345789999996431
Q ss_pred ccc------c-------------------ccHHHHHHHHHhcccCCcEEEEEe
Q 006518 328 VDW------D-------------------QKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 328 l~~------~-------------------~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
+.. . .....++.++.++|||||++++..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 110 0 112357888889999999999954
No 114
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.62 E-value=1.7e-07 Score=90.69 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=73.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEeccccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
..+|||||||+|.++..+++++ ..++++|.++.+++.++++. .++.+...|+..+++++.+||.|+++.- ++.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~~ 89 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLP-YNI 89 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCC-ccc
Confidence 3689999999999999999884 46999999999999988763 2467888899999988878999999855 443
Q ss_pred cccHHHHHHHHHh--cccCCcEEEEEe
Q 006518 331 DQKDGILLLEVDR--VLKPGGYFVWTS 355 (642)
Q Consensus 331 ~~d~~~~L~Ei~R--vLKPGG~Lvis~ 355 (642)
. ...+..+.. .+.++|.+++..
T Consensus 90 ~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 90 S---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred H---HHHHHHHHhcCCCcceEEEEEEH
Confidence 2 233333333 245888888863
No 115
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.61 E-value=4.5e-07 Score=99.77 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=73.1
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCC-CCCccEEEecccccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYP-SLSFDMLHCARCGVD 329 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lpfp-d~SFDlV~~s~~ll~ 329 (642)
.+|||+|||+|.++..++... ...+++++|.|+.+++.|+++ +.++.+..+|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 589999999999999988653 346799999999999988754 45677777776544332 457999999754211
Q ss_pred cc--------------------cc----HHHHHHHHHhcccCCcEEEEEeC
Q 006518 330 WD--------------------QK----DGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 330 ~~--------------------~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.. ++ ...++.++.+.|+|||.+++...
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 10 01 12466777889999999887543
No 116
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.61 E-value=2e-07 Score=104.01 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=77.9
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEe----
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHC---- 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~SFDlV~~---- 323 (642)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ |+. +.+...|+..++ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 447999999999999988887532235799999999999877643 553 567777877765 5568999995
Q ss_pred cccc-cc------cccc----------HHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 324 ARCG-VD------WDQK----------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 324 s~~l-l~------~~~d----------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
+... +. |... ...+|.++.++|||||++++++.....
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2211 11 1111 235899999999999999999876543
No 117
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.60 E-value=2.9e-07 Score=92.15 Aligned_cols=142 Identities=21% Similarity=0.329 Sum_probs=93.3
Q ss_pred eEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHH----HHHcCCCce--EEeecccCC--CC------CCCCccEE
Q 006518 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAM--IGSFASKQL--PY------PSLSFDML 321 (642)
Q Consensus 256 ~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~----A~ergl~~~--~~~~da~~L--pf------pd~SFDlV 321 (642)
+|||||||||..+.+++++ .+.....+.|..+..+.. +.+.+++.. -...|+..- |. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999987 355778888988777532 333343211 122343333 33 24589999
Q ss_pred EeccccccccccH--HHHHHHHHhcccCCcEEEEEeCCCCc-----------hhhhhhHH---hHhhhhhhhhhhhccce
Q 006518 322 HCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNP-----------QAFLRNKE---NQKRWNFVRDFVENLCW 385 (642)
Q Consensus 322 ~~s~~ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~~~-----------~~~lr~~e---~~~~w~~l~~l~~~lcW 385 (642)
+|.++ +|..+-. +.+++...++|+|||.|++..|.... ..+++.+. .....+.+..++.+.++
T Consensus 107 ~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 99998 7766443 56999999999999999999885422 12222221 12233667778888777
Q ss_pred EEeeec-----CceEEEEe
Q 006518 386 ELVSQQ-----DETVVWKK 399 (642)
Q Consensus 386 ~ll~~~-----~~~~IwqK 399 (642)
++.... ....||+|
T Consensus 186 ~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCcccccCCCCeEEEEeC
Confidence 765442 23466664
No 118
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.58 E-value=1.4e-07 Score=101.28 Aligned_cols=103 Identities=25% Similarity=0.287 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------------CCceEEeecccCC----CC
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQL----PY 313 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---------------l~~~~~~~da~~L----pf 313 (642)
+..+|||+|||.|.-..-....+ +..++|+|++...|+.|++|- ..+.+..+|.... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 45799999999888766666654 567999999999999988764 2334555554322 13
Q ss_pred C--CCCccEEEeccccccccccHH---HHHHHHHhcccCCcEEEEEeCC
Q 006518 314 P--SLSFDMLHCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 314 p--d~SFDlV~~s~~ll~~~~d~~---~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
+ ...||+|-|-+++++.....+ .+|..+...|||||+|+.+.|.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 3 359999999998554444443 4899999999999999999884
No 119
>PHA03411 putative methyltransferase; Provisional
Probab=98.58 E-value=3e-07 Score=96.06 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=76.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d 333 (642)
..+|||+|||+|.++..++.+. ...+|+++|+++.|++.++++...+.+...|+..+.. +++||+|+++-.+.+....
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 3689999999999999887753 2357999999999999998875567788888877653 4689999998774442111
Q ss_pred -------------------HHHHHHHHHhcccCCcEEEEE
Q 006518 334 -------------------DGILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 334 -------------------~~~~L~Ei~RvLKPGG~Lvis 354 (642)
...++....++|+|+|.+.+.
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 134667788999999987765
No 120
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.58 E-value=2.9e-07 Score=96.65 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=74.1
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc-
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG- 327 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~SFDlV~~s~~l- 327 (642)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++. +.+..+|... ++++++||+|+++--.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 589999999999999999864 346799999999999888764 443 5677777543 4455589999996211
Q ss_pred -----------ccccc------------cHHHHHHHHHhcccCCcEEEEEeC
Q 006518 328 -----------VDWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 328 -----------l~~~~------------d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
..+.+ ....++.++.+.|+|||++++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11111 124578899999999999988655
No 121
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.58 E-value=2.4e-07 Score=98.65 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=73.6
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++ .+.+..+|+.. ++++++||+|+++--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 689999999999999998764 346799999999999988754 44 35677777533 23456899999973211
Q ss_pred ------------cccc--------c----HHHHHHHHHhcccCCcEEEEEeC
Q 006518 329 ------------DWDQ--------K----DGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 329 ------------~~~~--------d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
++.+ + ...++.++.++|+|||++++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 0 13578999999999999998643
No 122
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=2.9e-07 Score=102.31 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=79.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCC-CCCCCccEEEec--
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCA-- 324 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~-~~~~~~da~~Lp-fpd~SFDlV~~s-- 324 (642)
++.+|||+|||+|..+.++++.......|+++|.++.+++.++++ |+. +.+...|+..++ +.+++||.|++.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 447899999999999999987632346799999999999887644 553 467777887776 556789999963
Q ss_pred --cc-cccccc----------------cHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 325 --RC-GVDWDQ----------------KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 325 --~~-ll~~~~----------------d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
.. .+...+ ...++|.++.+.|||||++++++-...
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 11 111111 123578999999999999999987654
No 123
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.56 E-value=1.6e-07 Score=94.83 Aligned_cols=111 Identities=18% Similarity=0.122 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEe
Q 006518 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (642)
Q Consensus 231 ~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~ 305 (642)
......+.+.+...++ .+|||||||+|.+++.|+........|+++|..+..++.|+++ +. ++.+..
T Consensus 58 P~~~a~~l~~L~l~pg--------~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDLKPG--------DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC-TT---------EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhcCCC--------CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 4445566666665544 8999999999999999998743445789999999999888765 44 566777
Q ss_pred ecccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 306 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 306 ~da~~Lpfpd~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+|...---....||.|++..+ ..- -+ ..+.+.||+||++++-.-
T Consensus 130 gdg~~g~~~~apfD~I~v~~a-~~~--ip----~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAA-VPE--IP----EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSB-BSS--------HHHHHTEEEEEEEEEEES
T ss_pred cchhhccccCCCcCEEEEeec-cch--HH----HHHHHhcCCCcEEEEEEc
Confidence 776543334468999999876 321 12 346777999999998544
No 124
>PRK04457 spermidine synthase; Provisional
Probab=98.56 E-value=5.1e-07 Score=94.00 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=75.8
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecccCC-CCCCCCccEEEecc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQL-PYPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg------l~~~~~~~da~~L-pfpd~SFDlV~~s~ 325 (642)
.+++|||||||+|.++..+++.. ...+++++|+++++++.|++.. .++.+..+|+... .-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35789999999999999998764 4578999999999999998752 2345666675432 22235899999863
Q ss_pred cc-ccccc--cHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 326 CG-VDWDQ--KDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 326 ~l-l~~~~--d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
.- ..... ....+++++.++|+|||.+++....
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 10 11111 1257999999999999999996553
No 125
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.55 E-value=4e-07 Score=91.21 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=69.7
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d 333 (642)
...|-|+|||.+.++..+.. + ..|.-.|.-.. +..+...|+..+|+++++.|++++..++ +..+
T Consensus 73 ~~viaD~GCGdA~la~~~~~-~---~~V~SfDLva~----------n~~Vtacdia~vPL~~~svDv~VfcLSL--MGTn 136 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN-K---HKVHSFDLVAP----------NPRVTACDIANVPLEDESVDVAVFCLSL--MGTN 136 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S-------EEEEESS-S----------STTEEES-TTS-S--TT-EEEEEEES-----SS-
T ss_pred CEEEEECCCchHHHHHhccc-C---ceEEEeeccCC----------CCCEEEecCccCcCCCCceeEEEEEhhh--hCCC
Confidence 36899999999999977643 2 33556676431 2235667999999999999999988663 3467
Q ss_pred HHHHHHHHHhcccCCcEEEEEeCCCCchhhhhhHHhHhhhhhhhhhhhccceEEeeec
Q 006518 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (642)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~w~~l~~l~~~lcW~ll~~~ 391 (642)
...++.|..|+|||||.|.|++..... ..-+......+++++++..+.
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf----------~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRF----------ENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-----------S-HHHHHHHHHCTTEEEEEEE
T ss_pred cHHHHHHHHheeccCcEEEEEEecccC----------cCHHHHHHHHHHCCCeEEecc
Confidence 788999999999999999999874321 112233445678888887764
No 126
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.54 E-value=6.2e-07 Score=93.35 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=77.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecc--
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCAR-- 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~SFDlV~~s~-- 325 (642)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ ++ ++.+...|+..++...++||.|++.-
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 447899999999999999987632234799999999999877644 44 45667777777665566799999631
Q ss_pred --c-ccc--------ccc--------cHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 326 --C-GVD--------WDQ--------KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 326 --~-ll~--------~~~--------d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
. .+. +.+ ....+|.++.++|||||++++++-...
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 1 011 110 123489999999999999999976543
No 127
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.54 E-value=3.8e-07 Score=93.89 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=78.6
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC--CCCCCccEEEecc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCAR 325 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lp--fpd~SFDlV~~s~ 325 (642)
..+|||+|||+|..+..++++. ....|+++|..+.+.+.|++. ++ .+.+.+.|+..+. ..-.+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 5899999999999999999884 337899999999999999764 12 4556777877764 3444799999985
Q ss_pred cccccc-----------------ccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 326 CGVDWD-----------------QKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 326 ~ll~~~-----------------~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
-.+.-. -+.+.+++-..++|||||++.+.-+.
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 422211 12345788889999999999998663
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=98.52 E-value=6.3e-07 Score=96.91 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=75.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------------CCCceEEeecccC-CCCCCCCcc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQ-LPYPSLSFD 319 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er------------gl~~~~~~~da~~-Lpfpd~SFD 319 (642)
.+++||+||||+|..+..+++.. ...+|+.+|+++++++.|++. ..++.+...|+.. +.-.++.||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 46899999999999999888763 456899999999999999861 2345566666654 344456899
Q ss_pred EEEeccccccccc---c--HHHHHHHHHhcccCCcEEEEEeC
Q 006518 320 MLHCARCGVDWDQ---K--DGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 320 lV~~s~~ll~~~~---d--~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+|++... -.... . ...+++.+++.|+|||.+++...
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9998842 11111 0 14589999999999999988754
No 129
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.48 E-value=4.9e-07 Score=92.18 Aligned_cols=101 Identities=21% Similarity=0.283 Sum_probs=80.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~ 332 (642)
+..+|+|||+|.|.++..++++. +..+++..|. +..++.+++ .-.+.+..+|.. -++|. +|+++...++++|.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d 173 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSD 173 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-H
T ss_pred CccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcch
Confidence 45789999999999999999885 5678889998 778888877 556778888876 66776 999999999777764
Q ss_pred cH-HHHHHHHHhcccCC--cEEEEEeCCCC
Q 006518 333 KD-GILLLEVDRVLKPG--GYFVWTSPLTN 359 (642)
Q Consensus 333 d~-~~~L~Ei~RvLKPG--G~Lvis~p~~~ 359 (642)
+. ..+|+++++.|+|| |+++|.+....
T Consensus 174 ~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 174 EDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp HHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 44 46999999999999 99999987643
No 130
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.44 E-value=1.6e-06 Score=85.51 Aligned_cols=99 Identities=19% Similarity=0.127 Sum_probs=75.9
Q ss_pred cCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCC-CCCCCCccEEEecc
Q 006518 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-PYPSLSFDMLHCAR 325 (642)
Q Consensus 252 ~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~L-pfpd~SFDlV~~s~ 325 (642)
.+..+++|||||+|+.+..++.. .+..+++++|-++++++..+++ |. ++.++.+++... +-.+ +||.|+...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGG 110 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGG 110 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECC
Confidence 35589999999999999999943 4668899999999998766533 43 445566665333 3222 799999987
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
. .+.+.+|..+...|||||++++....
T Consensus 111 g-----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 111 G-----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred C-----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 6 44678999999999999999997664
No 131
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.44 E-value=1.3e-06 Score=91.19 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~SFDlV~ 322 (642)
.+++||+||||+|.++..+++.. ...+++.+|+++.+++.+++.- ..+.+...|+.. +...+++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 45799999999999999988764 3467999999999999887641 123344444322 222246899999
Q ss_pred ecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 006518 323 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 323 ~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+... ....+. ...+++.+.+.|+|||.+++...
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 8754 222222 24688999999999999998744
No 132
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.43 E-value=1.6e-06 Score=96.61 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=76.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--CCCCCccEEEecc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--fpd~SFDlV~~s~ 325 (642)
++.+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+ ++.+..+|+..++ ++ ++||+|++..
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~ 328 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDA 328 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcC
Confidence 347899999999999999988632346799999999999877653 44 3567777876653 33 6899999742
Q ss_pred c-----cccccc------c----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 326 C-----GVDWDQ------K----------DGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 326 ~-----ll~~~~------d----------~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
- .+...+ . ...+|.++.++|||||.+++++...
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1 011111 0 1347999999999999999887543
No 133
>PRK03612 spermidine synthase; Provisional
Probab=98.39 E-value=2.4e-06 Score=97.19 Aligned_cols=103 Identities=14% Similarity=0.031 Sum_probs=77.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------------CCceEEeecccCC-CCCCCCcc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------------LPAMIGSFASKQL-PYPSLSFD 319 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg------------l~~~~~~~da~~L-pfpd~SFD 319 (642)
++++|||||||+|..+..++++. ...+++.+|+++++++.+++.. .++.+...|+... ...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45799999999999999998763 3368999999999999998731 2355666676552 33356899
Q ss_pred EEEeccccccccccH-----HHHHHHHHhcccCCcEEEEEeCC
Q 006518 320 MLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 320 lV~~s~~ll~~~~d~-----~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
+|++... ....+.. ..+++++.+.|||||.+++....
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 9999854 3332221 35889999999999999997643
No 134
>PHA03412 putative methyltransferase; Provisional
Probab=98.38 E-value=1.7e-06 Score=88.61 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=71.6
Q ss_pred CCeEEEECCCCchHHHHHhhcCC--ceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKEL--LTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~--~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
..+|||+|||+|.++..++++.. ....|+++|+++.+++.|++....+.+...|+...++ +++||+|+++--.....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 46999999999999998886421 2357999999999999999776667788888876665 46899999985422111
Q ss_pred -c---------c-HHHHHHHHHhcccCCcE
Q 006518 332 -Q---------K-DGILLLEVDRVLKPGGY 350 (642)
Q Consensus 332 -~---------d-~~~~L~Ei~RvLKPGG~ 350 (642)
. . ...++....++++||+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 0 1 23478888887777775
No 135
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.9e-06 Score=85.27 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEe
Q 006518 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (642)
Q Consensus 231 ~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~ 305 (642)
......+.+.+...++ .+|||||||+|..++.|++.. .+|+.+|..++..+.|+++ |. ++.+.+
T Consensus 58 P~~vA~m~~~L~~~~g--------~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~ 126 (209)
T COG2518 58 PHMVARMLQLLELKPG--------DRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRH 126 (209)
T ss_pred cHHHHHHHHHhCCCCC--------CeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE
Confidence 3344456666665544 899999999999999999874 3789999999999888764 44 566677
Q ss_pred ecccCCCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 306 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 306 ~da~~Lpfpd~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+|...=--+...||.|+...+ ..-. |. .+.+.|||||++++-.-
T Consensus 127 gDG~~G~~~~aPyD~I~Vtaa-a~~v--P~----~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 127 GDGSKGWPEEAPYDRIIVTAA-APEV--PE----ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcccCCCCCCCcCEEEEeec-cCCC--CH----HHHHhcccCCEEEEEEc
Confidence 775332223368999999876 3322 23 34567999999998544
No 136
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.37 E-value=2e-06 Score=89.06 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=70.8
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccC-CCC-CCCCccEEEeccccccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQ-LPY-PSLSFDMLHCARCGVDW 330 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg--l~~~~~~~da~~-Lpf-pd~SFDlV~~s~~ll~~ 330 (642)
.+|||+|||+|.++..+++.. ....++++|.++.+++.|+++- ....+...|... ++- ..++||+|+++--.+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 589999999999999998763 3357899999999999887641 123566666543 221 13579999998532210
Q ss_pred ------c---------------cc----HHHHHHHHHhcccCCcEEEEEeC
Q 006518 331 ------D---------------QK----DGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 331 ------~---------------~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
. .+ ...++..+.++|||||++++...
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 01 12567778899999999998754
No 137
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.37 E-value=1.6e-06 Score=98.25 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=71.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
..+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++ .+.+...|... ++++++||+|+|+--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 4689999999999999988752 346799999999999988765 43 34556666432 2445689999996421
Q ss_pred ccc---------------------ccc----HHHHHHHHHhcccCCcEEEEEe
Q 006518 328 VDW---------------------DQK----DGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 328 l~~---------------------~~d----~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
+.. ..+ ...++.++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 110 011 1236778889999999999853
No 138
>PLN02366 spermidine synthase
Probab=98.36 E-value=3.5e-06 Score=89.85 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccCC--CCCCCCccEE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL--PYPSLSFDML 321 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---------l~~~~~~~da~~L--pfpd~SFDlV 321 (642)
.+++||+||||.|..+..+++.. ...+|+.+|+++.+++.|++.. .++.+..+|+... ..+++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 46899999999999999998772 4567999999999999988742 2455666665332 1235689999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 006518 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 322 ~~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
++... .++.+. ...+++.+.+.|+|||.++....
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 98643 333222 13589999999999999987543
No 139
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.36 E-value=2e-06 Score=88.25 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=77.9
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d 333 (642)
...|-|+|||.+.++..- + ..|...|..+ ++-.+...|+.++|.+|+|.|++++..+ -+..+
T Consensus 181 ~~vIaD~GCGEakiA~~~--~----~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV~CLS--LMgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASSE--R----HKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAVFCLS--LMGTN 242 (325)
T ss_pred ceEEEecccchhhhhhcc--c----cceeeeeeec----------CCCceeeccccCCcCccCcccEEEeeHh--hhccc
Confidence 467999999999987622 1 2355566543 2334667799999999999999998655 34577
Q ss_pred HHHHHHHHHhcccCCcEEEEEeCCCCchhhhhhHHhHhhhhhhhhhhhccceEEeeec
Q 006518 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (642)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~w~~l~~l~~~lcW~ll~~~ 391 (642)
...++.|++|+|||||.++|++.-... ..-..+..-.+.+++......
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf----------~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRF----------SDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhc----------ccHHHHHHHHHHcCCeeeehh
Confidence 888999999999999999999874322 111123344567888766553
No 140
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.36 E-value=1.7e-06 Score=87.89 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=72.8
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CceEEeecccCCCCCC-
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYPS- 315 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~-ergl----------------~~~~~~~da~~Lpfpd- 315 (642)
..+||..|||.|.-...|+++| ..|+|+|+|+..++.+. +++. .+.+.++|.-.++-..
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 4689999999999999999997 45999999999999874 3332 2345677777766443
Q ss_pred CCccEEEeccccccccccH-HHHHHHHHhcccCCcEEEEE
Q 006518 316 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 316 ~SFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis 354 (642)
++||+|+=..++.-..++. .+..+.+.++|||||.+++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 4799999776644444444 56999999999999994443
No 141
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.34 E-value=3.4e-06 Score=86.43 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC-C-----CCCCCccE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFDM 320 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~L-p-----fpd~SFDl 320 (642)
++++|||||||+|..+..++..-.....++++|.++++++.|++. |+ .+.+..+++... + .++++||+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 358999999999998888876532346899999999999888754 44 345666666442 2 12468999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
|+...- .+....++.++.++|||||.+++...
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 987632 23345689999999999999887653
No 142
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.34 E-value=1.3e-06 Score=91.97 Aligned_cols=103 Identities=22% Similarity=0.359 Sum_probs=79.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----------CCceEEeecc------cCCCCCC
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------LPAMIGSFAS------KQLPYPS 315 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg-----------l~~~~~~~da------~~Lpfpd 315 (642)
++..+||+|||.|.-+...-+.++ ..++++|+++..++.|++|. .++.|..+|. ..+++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 457899999999988877766664 45899999999999888662 2456666653 2345677
Q ss_pred CCccEEEecccccccc-ccH---HHHHHHHHhcccCCcEEEEEeCCC
Q 006518 316 LSFDMLHCARCGVDWD-QKD---GILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 316 ~SFDlV~~s~~ll~~~-~d~---~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
.+||+|-|-++ +|+. ... ..+|+.+.+.|||||+|+-+.|..
T Consensus 195 p~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 67999999998 5543 333 358999999999999999988853
No 143
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.34 E-value=1.7e-06 Score=86.43 Aligned_cols=100 Identities=29% Similarity=0.426 Sum_probs=73.5
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CceEEeecccC-CC--CCCCCccEEEeccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQ-LP--YPSLSFDMLHCARC 326 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e----rgl-~~~~~~~da~~-Lp--fpd~SFDlV~~s~~ 326 (642)
..+||||||.|.+...+|... +...+.|+|.....+..+.+ +++ ++.+..+|+.. ++ ++++++|.|+..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 379999999999999999886 56889999999888866543 355 56677778766 32 56789999998876
Q ss_pred cccccccH--------HHHHHHHHhcccCCcEEEEEeC
Q 006518 327 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 327 ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
-.|...- ..+|.++.++|+|||.+.+.+-
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 5554221 3599999999999999999754
No 144
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.31 E-value=1.9e-06 Score=88.02 Aligned_cols=100 Identities=24% Similarity=0.272 Sum_probs=81.3
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCC-CceEEeecccCCC---CCCCCccEEEeccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGL-PAMIGSFASKQLP---YPSLSFDMLHCARC 326 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A----~ergl-~~~~~~~da~~Lp---fpd~SFDlV~~s~~ 326 (642)
..+||||||.|.+...+|++. +...+.|+|+....+..| .+.++ ++.+.+.|+..+- +++++.|-|+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 479999999999999999986 556899999987776544 46688 8888888876653 45569999999987
Q ss_pred cccccccH--------HHHHHHHHhcccCCcEEEEEeC
Q 006518 327 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 327 ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
-.|.... ..++.++.++|||||.|.+.+-
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 6775332 3589999999999999999754
No 145
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.31 E-value=2.3e-06 Score=86.33 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=85.1
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-----CceEEeecccCCCCCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-----PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl-----~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
...++||.|+|.|..|..++-..+ -.|..+|+.+..++.|++.-. ...+.+...+++..+.++||+|++--|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 457999999999999998876543 468889999999999985422 2345566677776556799999999997
Q ss_pred ccccccH-HHHHHHHHhcccCCcEEEEEeCCCCchhhhhhHHhHh---hhhhhhhhhhccceEEeeec
Q 006518 328 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQK---RWNFVRDFVENLCWELVSQQ 391 (642)
Q Consensus 328 l~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~---~w~~l~~l~~~lcW~ll~~~ 391 (642)
.|..++. ..+|+.+...|+|+|.+++-+.........-+.++.+ .-+.+..+-++.+.+++.+.
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 7776443 5799999999999999999765443211111122111 12344455556666665443
No 146
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.28 E-value=8.4e-06 Score=70.84 Aligned_cols=101 Identities=27% Similarity=0.332 Sum_probs=72.6
Q ss_pred EEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--C---ceEEeecccC--CCCCC-CCccEEEeccccc
Q 006518 257 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P---AMIGSFASKQ--LPYPS-LSFDMLHCARCGV 328 (642)
Q Consensus 257 VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl--~---~~~~~~da~~--Lpfpd-~SFDlV~~s~~ll 328 (642)
++|+|||+|... .+.........++++|.++.++..+..... . +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999965 333322111357789999999987554431 1 3455566555 78887 489999 666646
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
++.. ....+.++.++|+|+|.+++.......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 6555 678999999999999999999876543
No 147
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.25 E-value=6.4e-06 Score=82.41 Aligned_cols=103 Identities=22% Similarity=0.309 Sum_probs=65.2
Q ss_pred CCCeEEEECCCCch----HHHHHhh--c--CCceeEEEEecCCHHHHHHHHHc--------CC-----------------
Q 006518 253 GVRTILDIGCGYGS----FGAHLFS--K--ELLTMCIANYEASGSQVQLTLER--------GL----------------- 299 (642)
Q Consensus 253 ~~~~VLDIGCGtG~----~a~~La~--~--g~~~~sV~giD~S~~ml~~A~er--------gl----------------- 299 (642)
..-+|+..||++|- ++..|.+ . .....+|.|+|+|+.+++.|++- ++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45689999999995 3444444 1 12257899999999999998741 11
Q ss_pred --------CceEEeecccCCCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCcEEEEEe
Q 006518 300 --------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 300 --------~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
.+.|...+....+.+.+.||+|+|-++++++.+.. .+++..+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 23455556555334456899999999977775444 469999999999999999963
No 148
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=8.2e-06 Score=83.92 Aligned_cols=99 Identities=22% Similarity=0.201 Sum_probs=80.6
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
+.+|||.|.|+|.++.+|+..-.....|+.+|..++..+.|+++ ++ .+.+...|+.+.-+++ .||+|+.-
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD--- 170 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFLD--- 170 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEEc---
Confidence 48999999999999999996544557899999999999999865 32 2556667776666665 89999754
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
.++|-.++..+..+|||||.+++-.|..+
T Consensus 171 ---mp~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 171 ---LPDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ---CCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 26788899999999999999999888653
No 149
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.24 E-value=7.8e-06 Score=91.22 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC----CCCCCCCccEEEe
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHC 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~----Lpfpd~SFDlV~~ 323 (642)
+..+|||+|||+|.++..+++.+ .+++++|.|+.|++.|+++ ++ ++.+..+|+.. +++.+++||+|++
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 34789999999999999999875 4699999999999988754 43 46777777653 3455678999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.-- . .. ....+..+.+ ++|++.++++..
T Consensus 374 dPP-r--~g-~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 374 DPP-R--AG-AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CcC-C--cC-hHHHHHHHHh-cCCCeEEEEEeC
Confidence 744 1 11 2245555555 699999999864
No 150
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.19 E-value=3.8e-06 Score=98.77 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=74.5
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccCC-CCCCCCccEEEecc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-PYPSLSFDMLHCAR 325 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl---~~~~~~~da~~L-pfpd~SFDlV~~s~ 325 (642)
+++|||+|||+|.++..++..|. .+|+++|.|+.+++.|+++ ++ .+.+..+|+.+. .-..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47999999999999999998763 3699999999999988764 44 356777776442 11146899999964
Q ss_pred ccccc----------cccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 326 CGVDW----------DQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 326 ~ll~~----------~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
-.+.- ..+...++..+.++|+|||.++++.-
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 32211 12234578888999999999988754
No 151
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.18 E-value=1.4e-05 Score=77.58 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=88.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC-----CCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-----YPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lp-----fpd~SFDlV~~s~~l 327 (642)
++.-|||+|.|||-+|..++++++...+++.+|.+++.+....++...+.+..+|+..+. +.++.||.|+|.--+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 446899999999999999999999999999999999999998888777778778877765 678889999998665
Q ss_pred ccccccH-HHHHHHHHhcccCCcEEEEEeCCC
Q 006518 328 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 328 l~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+.+.... -+.|+++...|++||.++--..++
T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 5543333 358999999999999999877654
No 152
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=8.3e-06 Score=85.85 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=68.5
Q ss_pred eEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccccc
Q 006518 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 256 ~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
+|||+|||+|..+..++... ....|+++|+|+.+++.|+++ ++ +..++..+ ..-+.. ++||+|+|+--.+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d-lf~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSD-LFEPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeee-cccccC-CceeEEEeCCCCCCC
Confidence 79999999999999999885 447899999999999988654 43 22223221 111233 389999998432221
Q ss_pred c-----c-----c--------------HHHHHHHHHhcccCCcEEEEEeC
Q 006518 331 D-----Q-----K--------------DGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 331 ~-----~-----d--------------~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
. + + ...++.++.+.|+|||.+++..-
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1 0 1 12468889999999999998654
No 153
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=1.2e-05 Score=82.12 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---------C----c------------------
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---------P----A------------------ 301 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl---------~----~------------------ 301 (642)
.+..+|||||..|.++..+++.. ....+.|+|+++..|+.|++..- . +
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F-~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDF-GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhh-ccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45789999999999999999873 34569999999999999986420 0 0
Q ss_pred ---------e-----EEeecccCCCCCCCCccEEEeccc----cccccccH-HHHHHHHHhcccCCcEEEEE
Q 006518 302 ---------M-----IGSFASKQLPYPSLSFDMLHCARC----GVDWDQKD-GILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 302 ---------~-----~~~~da~~Lpfpd~SFDlV~~s~~----ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis 354 (642)
. ++.-..+-+.+....||+|.|... -+.|.++. ..+++.+.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0 000001112234557999999754 23344443 46999999999999999984
No 154
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.12 E-value=8.9e-06 Score=89.60 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=71.8
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccCCC--C--CCCCccEEE
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLP--Y--PSLSFDMLH 322 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl---~~~~~~~da~~Lp--f--pd~SFDlV~ 322 (642)
+.+|||+|||+|.++..++..+ ..+|+++|.++.+++.|+++ ++ .+.+..+|+...- + ..++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4789999999999998876654 34799999999999888754 44 3567777765531 1 346899999
Q ss_pred ecccccccc--------ccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 323 CARCGVDWD--------QKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 323 ~s~~ll~~~--------~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+.--.+.-. .+...++....++|+|||.++...-
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 985422111 1122345567899999999998654
No 155
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.11 E-value=1.8e-05 Score=84.50 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=70.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCC-CCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpf-pd~SFDlV~~s~~l 327 (642)
+.+|||+|||+|.++..+++.+ ..|+++|.++.+++.|++. ++ ++.+..+|+..+.. ..+.||+|++.--
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP- 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP- 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC-
Confidence 4789999999999999999875 4699999999999887643 44 46788888876543 3457999998743
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
.. .....+.++..-++|++.++++.-..
T Consensus 250 --r~-G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 250 --RR-GIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred --CC-CccHHHHHHHHHcCCCeEEEEECCcc
Confidence 11 11123333344478888888776543
No 156
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.09 E-value=9.7e-06 Score=84.80 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=58.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccCCCCCCCCccEEEeccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg--l~~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
..+|||||||+|.++..+++++. .++++|.++.|++.++++. .++.+..+|+..+++++-.+|.|+++.-
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 47899999999999999999853 6999999999999988753 3567888899888876533688988854
No 157
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.09 E-value=1.9e-05 Score=80.87 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=63.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCce-EEeecccCCC-----CCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM-IGSFASKQLP-----YPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~-~~~~da~~Lp-----fpd~SFDlV~~s~~ 326 (642)
...+|||+|||||.|+..++++| ...|+++|.++.|+....+....+. +...++..+. ..-..||+++++.+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 45789999999999999999986 3569999999988876544444332 2333333222 12235777776644
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEe
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
..|..+.+.|+| |.+++-.
T Consensus 153 ---------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 153 ---------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------hHHHHHHHHhCc-CeEEEEc
Confidence 247789999999 8777654
No 158
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.06 E-value=3.1e-05 Score=81.84 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=72.2
Q ss_pred CeEEEECCCCch----HHHHHhhcC---CceeEEEEecCCHHHHHHHHHc--------CC--------------------
Q 006518 255 RTILDIGCGYGS----FGAHLFSKE---LLTMCIANYEASGSQVQLTLER--------GL-------------------- 299 (642)
Q Consensus 255 ~~VLDIGCGtG~----~a~~La~~g---~~~~sV~giD~S~~ml~~A~er--------gl-------------------- 299 (642)
-+|+..||.||- ++..+.+.. .....|+|+|+++.+++.|++- ++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 689999999995 344444421 1146799999999999988742 11
Q ss_pred --------CceEEeecccCCCCC-CCCccEEEecccccccccc-HHHHHHHHHhcccCCcEEEEEe
Q 006518 300 --------PAMIGSFASKQLPYP-SLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 300 --------~~~~~~~da~~Lpfp-d~SFDlV~~s~~ll~~~~d-~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
.+.|...+....+++ .+.||+|+|.++++++.+. ..+++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 123455555554443 5689999999997776533 3579999999999999998853
No 159
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.05 E-value=2.6e-05 Score=76.23 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=63.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---C-----CCceEEeecccC-C--C-CCCCCccE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G-----LPAMIGSFASKQ-L--P-YPSLSFDM 320 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er---g-----l~~~~~~~da~~-L--p-fpd~SFDl 320 (642)
.+.+|||+|||+|..+..++... ...+|+..|.++ .++..+.. + ..+.+...+=.. . . ....+||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 56899999999999999998872 346788999988 66655432 1 122333222111 1 1 23468999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
|+++.+++ .....+.++.-+.++|+|+|.++++...
T Consensus 123 IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 99999944 4556678999999999999998887653
No 160
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.01 E-value=1.1e-06 Score=74.78 Aligned_cols=90 Identities=22% Similarity=0.223 Sum_probs=58.4
Q ss_pred EecCcCchhhhhhhhcc-CCCcEEEEeecCCCC-Cchhhhhcccccc---ccccccccCCCCCCcccccccccccccccC
Q 006518 520 LDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLSLESG 594 (642)
Q Consensus 520 ~Dm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~-~~l~~i~~RGl~g---~~~~~ce~~~typrtydl~h~~~~~~~~~~ 594 (642)
||++||.|-+++.|.+. .. +|+-++.. ..+..+-++.--. ..+.=-+.+|.-+.+||+|++.++|..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~-----~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA-----SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC-----EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--
T ss_pred CEecCcCCHHHHHHHhccCC-----EEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--
Confidence 79999999999999985 33 33333333 3343333332211 2222234555556999999999888865
Q ss_pred CCCCCCchhhhhhhccccCCCceeee
Q 006518 595 HRHRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 595 ~~~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
-+...++-|+-|+|||||+++.
T Consensus 74 ----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 ----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----cCHHHHHHHHHHHcCcCeEEeC
Confidence 3567999999999999999873
No 161
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.00 E-value=3.7e-05 Score=79.76 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=58.5
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEeccccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
..+|||||||+|.++..+++++ ..++++|.++.+++.++++. .++.+..+|+..+++++ ||.|+++.. ++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~--~d~Vv~NlP-y~i 103 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPE--FNKVVSNLP-YQI 103 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchh--ceEEEEcCC-ccc
Confidence 4789999999999999999884 36999999999999987653 24677888988887764 899999866 443
No 162
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.99 E-value=3.3e-05 Score=85.74 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=70.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCC----CCCCCCccEEEec
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL----PYPSLSFDMLHCA 324 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~L----pfpd~SFDlV~~s 324 (642)
..+|||+|||+|.++..+++.. ..|+++|.++.+++.|+++ ++ ++.+..+|+... ++.+++||+|++.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 4789999999999999999864 4689999999999988754 33 466777776542 3445689999976
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
-... .-...++..+.+ ++|++.++++..
T Consensus 370 PPr~---G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 370 PPRK---GCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred cCCC---CCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 4411 112456666554 899998888743
No 163
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.99 E-value=9.5e-05 Score=74.19 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=69.4
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-CCCCCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~-Lpfpd~SFDlV~~s~~l 327 (642)
..+|||+|||+|.++..++.++ ..+|+++|.++.+++.+++. ++ ++.+...|+.. ++...++||+|++.--
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP- 130 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP- 130 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC-
Confidence 3689999999999998766665 35799999999999877653 33 45666667644 2223457999999865
Q ss_pred ccccccHHHHHHHHHh--cccCCcEEEEEeC
Q 006518 328 VDWDQKDGILLLEVDR--VLKPGGYFVWTSP 356 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~R--vLKPGG~Lvis~p 356 (642)
+.. .-...++..+.. +|+|+|.++++..
T Consensus 131 y~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 FRK-GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCC-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 221 122345555554 4899999998765
No 164
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.92 E-value=8.3e-05 Score=76.81 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=55.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCcc---EEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFD---MLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~SFD---lV~~s~~ 326 (642)
+..+|||||||+|.++..|++++. .++++|.++.+++.++++. .++.+..+|+..++++ +|| +|+++..
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence 347999999999999999999863 4999999999999887652 3566788888888876 467 7777754
No 165
>PLN02672 methionine S-methyltransferase
Probab=97.91 E-value=5.3e-05 Score=92.09 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=71.2
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-----------------CceEEeecccCCC
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-----------------PAMIGSFASKQLP 312 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-----------------~~~~~~~da~~Lp 312 (642)
+.+|||+|||+|..+..+++.. ....++++|+|+.+++.|+++ ++ ++.+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-
Confidence 3689999999999999999874 335799999999999888643 11 356676675443
Q ss_pred CCC--CCccEEEecccccc-------------cc--------------------ccH----HHHHHHHHhcccCCcEEEE
Q 006518 313 YPS--LSFDMLHCARCGVD-------------WD--------------------QKD----GILLLEVDRVLKPGGYFVW 353 (642)
Q Consensus 313 fpd--~SFDlV~~s~~ll~-------------~~--------------------~d~----~~~L~Ei~RvLKPGG~Lvi 353 (642)
+.+ ..||+|+++--.+. +. ++. .+++.+..++|||||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 36999999743111 00 111 3577888899999999988
Q ss_pred EeC
Q 006518 354 TSP 356 (642)
Q Consensus 354 s~p 356 (642)
..-
T Consensus 277 EiG 279 (1082)
T PLN02672 277 NMG 279 (1082)
T ss_pred EEC
Confidence 543
No 166
>PLN02476 O-methyltransferase
Probab=97.91 E-value=5.3e-05 Score=79.71 Aligned_cols=100 Identities=12% Similarity=0.144 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CC-C----CCCCccE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y----PSLSFDM 320 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~-Lp-f----pd~SFDl 320 (642)
++++|||||+++|..+..++..-.....++.+|.+++..+.|++. |+ .+.+..+++.. |+ + .+++||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 458999999999999999987422245699999999999888643 55 35566666533 22 1 2358999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
|+.-.- ..+...++..+.++|+|||.+++...
T Consensus 198 VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 198 AFVDAD----KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 987632 23345789999999999999998654
No 167
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.90 E-value=3.9e-05 Score=77.30 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=74.4
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CC-----CCCCCccE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-----YPSLSFDM 320 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~-Lp-----fpd~SFDl 320 (642)
++++|||||+++|..+..+++.-.....|+.+|.+++..+.|++. |+ .+.+..+++.. ++ .+.++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 458999999999999999997633457899999999999888642 44 45566666543 22 12358999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
|+.-.. ..+...++..+.++|+|||.+++....
T Consensus 125 VFiDa~----K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 125 VFIDAD----KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEEST----GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEEccc----ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 997643 344567888999999999999997553
No 168
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.86 E-value=4.5e-05 Score=86.64 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=78.3
Q ss_pred cCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCC-CceEEeecccCCC--CCCCCccEEEec
Q 006518 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL-PAMIGSFASKQLP--YPSLSFDMLHCA 324 (642)
Q Consensus 252 ~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~----ergl-~~~~~~~da~~Lp--fpd~SFDlV~~s 324 (642)
.....+||||||.|.++..+|... +...+.|+|.+...+..+. +.++ ++.+...++..+. ++++++|.|+..
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 345789999999999999999885 5578999999988775543 3455 3445555554332 788999999999
Q ss_pred cccccccccH--------HHHHHHHHhcccCCcEEEEEeC
Q 006518 325 RCGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 325 ~~ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+. -.|...- ..++.++.++|||||.+.+.+-
T Consensus 425 FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 425 FP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 87 6664321 3589999999999999999754
No 169
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.85 E-value=0.00012 Score=76.69 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCch----HHHHHhhcCC----ceeEEEEecCCHHHHHHHHH---------cCCC---------------
Q 006518 253 GVRTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLE---------RGLP--------------- 300 (642)
Q Consensus 253 ~~~~VLDIGCGtG~----~a~~La~~g~----~~~sV~giD~S~~ml~~A~e---------rgl~--------------- 300 (642)
+.-+|+-.||+||- ++..|.+... ...+|.|.|++...++.|++ ++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 35689999999994 5555555542 26889999999999998863 2221
Q ss_pred ----------ceEEeecccCCCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCcEEEEEe
Q 006518 301 ----------AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 301 ----------~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
+.|...+...-++..+.||+|+|-++++.+.... .+++..++..|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1233333333332445799999999977765443 469999999999999999963
No 170
>PRK04148 hypothetical protein; Provisional
Probab=97.84 E-value=9.1e-05 Score=69.86 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=62.7
Q ss_pred CCeEEEECCCCch-HHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCC-CCCccEEEecccccccc
Q 006518 254 VRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWD 331 (642)
Q Consensus 254 ~~~VLDIGCGtG~-~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfp-d~SFDlV~~s~~ll~~~ 331 (642)
..+|||||||+|. ++..|++.|. .|+++|.++..++.+++++..+. ..|...-++. -+.+|+|.+.+. .
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v--~dDlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAF--VDDLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEE--ECcCCCCCHHHHhcCCEEEEeCC----C
Confidence 4789999999996 8889988764 59999999999999998876444 4454444332 346999998865 2
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEe
Q 006518 332 QKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
++....+.++.+-+ |.-++|..
T Consensus 88 ~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 88 RDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEc
Confidence 22334455555443 44555543
No 171
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.83 E-value=8.7e-05 Score=75.48 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=74.1
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCce--EEe-ecccC-CC-CCCCCccEEEe
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IGS-FASKQ-LP-YPSLSFDMLHC 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~--~~~-~da~~-Lp-fpd~SFDlV~~ 323 (642)
++++|||||.+.|..+..|+..-.....++.+|.++++.+.|++. |+..+ ... +++.+ +. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 468999999999999999987633256899999999999999764 44332 333 23322 22 45689999986
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
-.. ..+-..++..+.++|||||.+++...
T Consensus 139 Dad----K~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 139 DAD----KADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred eCC----hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 532 33446799999999999999998654
No 172
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.82 E-value=9.6e-05 Score=79.40 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=82.7
Q ss_pred hhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEe
Q 006518 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGS 305 (642)
Q Consensus 231 ~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~-~~~~~ 305 (642)
..+.+.+.++..... +..|||==||||++.....-. ...++|.|++..|++-|+.+ ++. ..+..
T Consensus 183 P~lAR~mVNLa~v~~--------G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 183 PRLARAMVNLARVKR--------GELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred HHHHHHHHHHhcccc--------CCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence 344445555544443 379999999999998776544 46699999999999888654 222 22333
Q ss_pred -ecccCCCCCCCCccEEEeccc-----ccccc---ccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 306 -FASKQLPYPSLSFDMLHCARC-----GVDWD---QKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 306 -~da~~Lpfpd~SFDlV~~s~~-----ll~~~---~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.|+..+|+++++||.|.+--- ...-. .-...+|..+.++||+||++++..+
T Consensus 252 ~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 252 VLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 499999999999999998521 01111 1125689999999999999999988
No 173
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.81 E-value=9.1e-05 Score=76.72 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=74.3
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCC---CCCccEEEec
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYP---SLSFDMLHCA 324 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfp---d~SFDlV~~s 324 (642)
+.+|||-|.|+|+++..|+..-.+...|...|.+++..+.|++. |+ .+.+...|+..-.|+ ++.||.|+.-
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLD 120 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLD 120 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEe
Confidence 38999999999999999997644567899999999999988754 44 456777777544442 3579999754
Q ss_pred cccccccccHHHHHHHHHhcc-cCCcEEEEEeCCC
Q 006518 325 RCGVDWDQKDGILLLEVDRVL-KPGGYFVWTSPLT 358 (642)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvL-KPGG~Lvis~p~~ 358 (642)
.++|-.++..+.++| ||||++++-.|..
T Consensus 121 ------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 121 ------LPDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp ------SSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred ------CCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 256667999999999 9999999998864
No 174
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.78 E-value=0.00013 Score=79.80 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=69.2
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCC-CCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpf-pd~SFDlV~~s~~l 327 (642)
..+|||+|||+|.++..++.++ ..++++|.++.+++.|+++ ++ ++.+..+|+..... ..++||+|++.--.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3689999999999999999765 4699999999999887754 34 46677778755321 22469999987541
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
..-...++..+. .++|++.++++.-
T Consensus 311 ---~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 ---RGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---CCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 111234555554 4799999888864
No 175
>PLN02823 spermine synthase
Probab=97.77 E-value=0.00019 Score=77.51 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~SFDlV~ 322 (642)
.+++||.||+|.|..+..+++.. ...+++.+|+++.+++.|++.. ..+.+...|+.. +...+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45799999999999999888753 3467999999999999998642 234455555543 233457899999
Q ss_pred ecccccccccc------HHHHHH-HHHhcccCCcEEEEEe
Q 006518 323 CARCGVDWDQK------DGILLL-EVDRVLKPGGYFVWTS 355 (642)
Q Consensus 323 ~s~~ll~~~~d------~~~~L~-Ei~RvLKPGG~Lvis~ 355 (642)
+-.. -..... ...+++ .+.+.|+|||.+++..
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 8732 211101 135777 8999999999998764
No 176
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.77 E-value=4.2e-05 Score=83.28 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=82.4
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
...++|+|||.|....+++... ...++++|.++..+..+... ++ ...+...+....||++++||.+.+..+
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~- 187 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV- 187 (364)
T ss_pred cccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee-
Confidence 3579999999999999998663 45688999998888666543 22 223466788889999999999999998
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
..+.++...+++|++|+++|||+++..+..
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 666789999999999999999999986654
No 177
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.76 E-value=9.9e-05 Score=82.63 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=66.6
Q ss_pred CCeEEEECCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHH----HHcCC--CceEEeecccCCCCCCCCccEEEec
Q 006518 254 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLT----LERGL--PAMIGSFASKQLPYPSLSFDMLHCA 324 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g---~~~~sV~giD~S~~ml~~A----~ergl--~~~~~~~da~~Lpfpd~SFDlV~~s 324 (642)
...|||||||+|.+....++.+ .....|+++|-++.++... ++.+. .++++..+++.+..+. .+|+|++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 4689999999999976665542 1357899999998766544 33343 6778899999998876 89999997
Q ss_pred cccccccc--cHHHHHHHHHhcccCCcEEE
Q 006518 325 RCGVDWDQ--KDGILLLEVDRVLKPGGYFV 352 (642)
Q Consensus 325 ~~ll~~~~--d~~~~L~Ei~RvLKPGG~Lv 352 (642)
... .+.. -....|....|.|||||.++
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 432 2222 22457888999999999877
No 178
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.75 E-value=0.00032 Score=73.71 Aligned_cols=106 Identities=21% Similarity=0.192 Sum_probs=78.1
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHH----HHHcCCCc--eEEeecccCC---CCCCCCccEEE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQL----TLERGLPA--MIGSFASKQL---PYPSLSFDMLH 322 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~-~~sV~giD~S~~ml~~----A~ergl~~--~~~~~da~~L---pfpd~SFDlV~ 322 (642)
.+-+||||.||.|......++.... ..+|.-.|.++..++. ++++|+.. +|.++|+-+. .--+-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4579999999999988877765332 4688999999998864 45677743 6777775442 11123579999
Q ss_pred eccccccccccH---HHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 323 CARCGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 323 ~s~~ll~~~~d~---~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
.+.. +...+|- ...|.-+.+.+.|||+++.+.-+.+
T Consensus 215 VsGL-~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 215 VSGL-YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred Eecc-hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 9987 6666653 3579999999999999999875443
No 179
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00012 Score=73.41 Aligned_cols=96 Identities=19% Similarity=0.166 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcC---C------------CceEEeecccCCCCCCC
Q 006518 253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG---L------------PAMIGSFASKQLPYPSL 316 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~-g~~~~sV~giD~S~~ml~~A~erg---l------------~~~~~~~da~~Lpfpd~ 316 (642)
++.+.||+|.|+|.++..++.. +.+.....|+|..++.++.++++- + ...++++|....--+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 3478999999999999888743 333333489999999998886541 1 23466777777766778
Q ss_pred CccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 006518 317 SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 317 SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
.||.||+... .....+++...|+|||.+++-.
T Consensus 162 ~YDaIhvGAa-------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 162 PYDAIHVGAA-------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CcceEEEccC-------ccccHHHHHHhhccCCeEEEee
Confidence 9999999844 2335567778899999998843
No 180
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.75 E-value=0.00027 Score=75.90 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=63.6
Q ss_pred chhhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCC--c
Q 006518 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP--A 301 (642)
Q Consensus 229 ~~~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er-----gl~--~ 301 (642)
....|+..+.+++..............+|||||||+|.....|+.+. ...+++++|+++.+++.|++. ++. +
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 35678888888875432111222245789999999998888887653 246799999999999988753 232 2
Q ss_pred eEE-eecccCCC----CCCCCccEEEeccc
Q 006518 302 MIG-SFASKQLP----YPSLSFDMLHCARC 326 (642)
Q Consensus 302 ~~~-~~da~~Lp----fpd~SFDlV~~s~~ 326 (642)
.+. +.+...+. .+++.||+|+|+--
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPP 198 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCC
Confidence 222 12222221 24668999999976
No 181
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.72 E-value=0.00013 Score=74.27 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=89.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C---CCceEEeecccCC--CCCCCCccEEEe
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G---LPAMIGSFASKQL--PYPSLSFDMLHC 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----g---l~~~~~~~da~~L--pfpd~SFDlV~~ 323 (642)
.+.+|||...|-|.++...+++|. ..|..++-++..++.|.-+ + ..+.+..+|+.+. .|+|++||+|+-
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 568999999999999999999984 3577788888888887643 2 2345666776554 489999999986
Q ss_pred cccccccccc--HHHHHHHHHhcccCCcEEEEEeCCCCchhhhhhHHhHhhhhhhhhhhhccceEEeee
Q 006518 324 ARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (642)
Q Consensus 324 s~~ll~~~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~w~~l~~l~~~lcW~ll~~ 390 (642)
---.+..... -+.+.+|++|+|||||.++--+-.+.... ........+.+.+.+.+|+.+..
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry-----rG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY-----RGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc-----ccCChhHHHHHHHHhcCceeeee
Confidence 4322222211 25699999999999999986654443311 11223345556667777775433
No 182
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.70 E-value=0.00039 Score=72.89 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=93.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHH---HHHHc----C-------------------------CC
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ---LTLER----G-------------------------LP 300 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~---~A~er----g-------------------------l~ 300 (642)
...+||=-|||.|.++..++.+|+ .+.+.|.|--|+- +.... + +|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 456899999999999999999975 4889999999862 22211 0 00
Q ss_pred -------------ceEEeecccCCCCCC---CCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCchhhh
Q 006518 301 -------------AMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 364 (642)
Q Consensus 301 -------------~~~~~~da~~Lpfpd---~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~l 364 (642)
.....+|...+..++ ++||+|++.+- +.-..+.-..|..|.++|||||+++=..|........
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF-IDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF-IDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEE-eechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 011222222222233 68999998864 6666677789999999999999888777765442211
Q ss_pred --hhH-HhHhhhhhhhhhhhccceEEeeecC
Q 006518 365 --RNK-ENQKRWNFVRDFVENLCWELVSQQD 392 (642)
Q Consensus 365 --r~~-e~~~~w~~l~~l~~~lcW~ll~~~~ 392 (642)
.+. ...-.|+++..+.++.+|+.+.++.
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 010 1234689999999999999986543
No 183
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=0.0004 Score=72.24 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEe-
Q 006518 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGS- 305 (642)
Q Consensus 231 ~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~- 305 (642)
+.+.+.+.+.+..... .....+||+|||+|..+..++.. .....++++|.|+.++..|.++ ++..++.+
T Consensus 131 EE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 4455555555443222 13357999999999999999765 4467899999999999887654 23222221
Q ss_pred -ecc-----cCCCCCCCCccEEEeccccccccccH--------------------------HHHHHHHHhcccCCcEEEE
Q 006518 306 -FAS-----KQLPYPSLSFDMLHCARCGVDWDQKD--------------------------GILLLEVDRVLKPGGYFVW 353 (642)
Q Consensus 306 -~da-----~~Lpfpd~SFDlV~~s~~ll~~~~d~--------------------------~~~L~Ei~RvLKPGG~Lvi 353 (642)
.++ ...+...+.+|+++|+--.+. .+|. ..++.-..|.|+|||.+.+
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~-~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIR-KDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ecccccccccccccccCceeEEecCCCccc-ccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 111 223356789999999854221 1111 1245567899999999999
Q ss_pred EeCC
Q 006518 354 TSPL 357 (642)
Q Consensus 354 s~p~ 357 (642)
....
T Consensus 284 e~~~ 287 (328)
T KOG2904|consen 284 ELVE 287 (328)
T ss_pred Eecc
Confidence 8764
No 184
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00023 Score=70.55 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=55.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
.+++|+|+|||||.++...+-.| ...|+++|+++++++.++++ +..+.+.+.|+.+.. ..||.|+++--
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPP 117 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPP 117 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCC
Confidence 45789999999999999888776 35699999999999988765 236778877876654 46889998743
No 185
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.65 E-value=0.00012 Score=78.29 Aligned_cols=97 Identities=22% Similarity=0.277 Sum_probs=69.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCC--ceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~----ergl~--~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
+.++|||||||||.++..-++.| ...|.++|.|.- .+.|. .+++. +.+..+.++++.+|-++.|+|++...
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~i-a~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSI-ADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHH-HHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 45899999999999999999988 457899998853 35554 44543 34556666666666778999999754
Q ss_pred ccccc--ccHHHHHHHHHhcccCCcEEE
Q 006518 327 GVDWD--QKDGILLLEVDRVLKPGGYFV 352 (642)
Q Consensus 327 ll~~~--~d~~~~L~Ei~RvLKPGG~Lv 352 (642)
.+... .-...+|-.=.+.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 22221 223456777789999999876
No 186
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.64 E-value=0.00019 Score=76.25 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=57.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCceEEeecccCCCCCCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----g--l~~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
..+|||||||+|.++..+++.+ ..++++|+++.+++.++++ + .++.+...|+...+++ .||.|+++.-
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlP- 110 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVP- 110 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCC-
Confidence 4789999999999999999875 3589999999999988764 2 2466788887766654 6899998865
Q ss_pred cccc
Q 006518 328 VDWD 331 (642)
Q Consensus 328 l~~~ 331 (642)
+++.
T Consensus 111 Y~Is 114 (294)
T PTZ00338 111 YQIS 114 (294)
T ss_pred cccC
Confidence 5543
No 187
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00042 Score=68.29 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHH----HHHcCCCceEEeecccCCCCCCCCccEEEeccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~----A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
.+..+||||||+|..+..|++.-....-..++|+++.+++. |+.++..+..++.|...- ...++.|+++.+--..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 35789999999999999999875455667889999998865 444555555555553222 2237888888764311
Q ss_pred c--------------cc--ccH----HHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 329 D--------------WD--QKD----GILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 329 ~--------------~~--~d~----~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
. |. .+. .+++..+..+|.|.|.|++.....+.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 1 11 111 34677888899999999998775543
No 188
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.57 E-value=4.8e-05 Score=79.36 Aligned_cols=99 Identities=21% Similarity=0.203 Sum_probs=77.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d 333 (642)
...+||+|||.|-.+..- +...+.+.|.+...+..+++.|.. ....+|+..+|+.+.+||.+++..+.+|+...
T Consensus 46 gsv~~d~gCGngky~~~~-----p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN-----PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCC-----CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 478999999999764321 334588999999888888776653 45567999999999999999999884444322
Q ss_pred H--HHHHHHHHhcccCCcEEEEEeCCC
Q 006518 334 D--GILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 334 ~--~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
. ..+++|+.|+|||||...+.....
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 2 469999999999999988876643
No 189
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.57 E-value=0.00036 Score=68.69 Aligned_cols=100 Identities=23% Similarity=0.193 Sum_probs=66.6
Q ss_pred CCeEEEECCCCchHHHHHhhcCCcee--------EEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCcc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTM--------CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFD 319 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~--------sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFD 319 (642)
...|||--||+|++....+..+.... .+.|.|+++.+++.|+++ ++ .+.+.+.|+..+++.++++|
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 47899999999999877654432222 488999999999888654 33 35677889999998888999
Q ss_pred EEEeccccccc-ccc---H----HHHHHHHHhcccCCcEEEEE
Q 006518 320 MLHCARCGVDW-DQK---D----GILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 320 lV~~s~~ll~~-~~d---~----~~~L~Ei~RvLKPGG~Lvis 354 (642)
.|+++-- +-. ... . ..++.++.|+|++...+++.
T Consensus 109 ~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 109 AIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999843 111 111 1 24789999999994444443
No 190
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.55 E-value=0.0014 Score=65.14 Aligned_cols=99 Identities=15% Similarity=0.004 Sum_probs=66.9
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CC-C-C-CCCccEEEe
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y-P-SLSFDMLHC 323 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~-Lp-f-p-d~SFDlV~~ 323 (642)
..+|||++||+|.++..++.+|. ..++++|.++.+++.+++. +. .+.+...|+.. +. + . ...||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 47899999999999999999974 3689999999999877643 33 34566677633 22 2 1 224788887
Q ss_pred ccccccccccHHHHHHHH--HhcccCCcEEEEEeC
Q 006518 324 ARCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSP 356 (642)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei--~RvLKPGG~Lvis~p 356 (642)
--- +.. .....++..+ ..+|+++|.+++...
T Consensus 128 DPP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPP-FFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 643 221 2233444444 347899998887644
No 191
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.54 E-value=0.00065 Score=76.52 Aligned_cols=108 Identities=23% Similarity=0.360 Sum_probs=75.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCC-CCCCCccEEE----
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLH---- 322 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~-~~~~~~da~~Lp-fpd~SFDlV~---- 322 (642)
++.+|||++||+|.=+.++++.--....+++.|+++.-++.++++ |+. +.+...|...++ ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 458999999999999999988632345799999999888766543 654 345556666553 3345799999
Q ss_pred ecccc-c--------ccccc--------HHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 323 CARCG-V--------DWDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 323 ~s~~l-l--------~~~~d--------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
|+... + .|.+. ..++|....++|||||+++.++-....
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 65321 1 11111 134788899999999999998875543
No 192
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.53 E-value=0.00025 Score=73.51 Aligned_cols=100 Identities=13% Similarity=0.036 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CCC------CCCCcc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPY------PSLSFD 319 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~-Lpf------pd~SFD 319 (642)
++++|||||+++|..+..++..-.....++.+|.+++..+.|++. |+ .+.+..+++.. |+- ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 358999999999999999987533356799999999998888643 43 34555555433 221 136899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 320 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 320 lV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+|+.-.- .......+..+.+.|+|||.+++...
T Consensus 159 ~iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 159 FIFVDAD----KDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred EEEecCC----HHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 9987632 23335678888999999999887643
No 193
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.44 E-value=0.00023 Score=69.40 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=58.8
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeeccc------CC----CCCCCCccEEE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK------QL----PYPSLSFDMLH 322 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~------~L----pfpd~SFDlV~ 322 (642)
...+|||+||++|.|+..+++++.....++++|..+.. ....+....+|.. .+ +-..+.||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhhhhccccccCcceec
Confidence 45899999999999999999997567889999998640 0011111112211 11 11226899999
Q ss_pred ecccccccc----ccH-------HHHHHHHHhcccCCcEEEEEeCC
Q 006518 323 CARCGVDWD----QKD-------GILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 323 ~s~~ll~~~----~d~-------~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
|-.+ .... .+. ...+.-+...|||||.+++-...
T Consensus 97 ~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 97 SDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp E--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 9752 2211 111 12455556779999999987764
No 194
>PRK00536 speE spermidine synthase; Provisional
Probab=97.40 E-value=0.0016 Score=68.09 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=70.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccCCCCCCCCccEEEe
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPYPSLSFDMLHC 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---------l~~~~~~~da~~Lpfpd~SFDlV~~ 323 (642)
.+++||=||.|.|..++.+++.. .+|+-+|+++.+++.+++-- .++.+.. .. ..-..++||+|+.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCCEEEE
Confidence 57999999999999999999884 28999999999999998731 1222222 11 1112368999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
-.. ....+.+.++|.|+|||.++...-.+
T Consensus 146 Ds~------~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 146 LQE------PDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred cCC------CChHHHHHHHHhcCCCcEEEECCCCc
Confidence 743 23568899999999999999975433
No 195
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.38 E-value=4.7e-05 Score=71.34 Aligned_cols=94 Identities=21% Similarity=0.241 Sum_probs=63.2
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-CchhhhhccccccccccccccCCCCCCcccccccccccccccC
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 594 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl~g~~~~~ce~~~typrtydl~h~~~~~~~~~~ 594 (642)
-.+|||+|||.|.|+..|.+. +. .|+-++.. ..+.. +-....-++=.+. +.-+.+||+|.+..+|....
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~--~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKR--GF---EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHT--TS---EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGSS-
T ss_pred CCEEEEEcCCCCHHHHHHHHh--CC---EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhcc-
Confidence 459999999999999999763 33 44544443 22222 1111111111111 11248999999999998764
Q ss_pred CCCCCCchhhhhhhccccCCCceeeeccCc
Q 006518 595 HRHRCSTLDIFTEIDRILRPEVSKSNSPIS 624 (642)
Q Consensus 595 ~~~~c~~~~~~~e~dRilrP~g~~~~~~~~ 624 (642)
+...+|-+|=|+|+|||+++.+-..
T Consensus 93 -----d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 -----DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp -----HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred -----cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4779999999999999999887554
No 196
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.37 E-value=0.0021 Score=67.58 Aligned_cols=104 Identities=17% Similarity=0.103 Sum_probs=66.9
Q ss_pred cCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCce---EE-eecccCCCCCCCCccEEEec
Q 006518 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAM---IG-SFASKQLPYPSLSFDMLHCA 324 (642)
Q Consensus 252 ~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er---gl~~~---~~-~~da~~Lpfpd~SFDlV~~s 324 (642)
..+++|||+|||+|..+..+.+.--...+++.+|.|+.|++.++.- ..... .. ..-....++.. .|+|+++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~DLvi~s 109 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPP--DDLVIAS 109 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCC--CcEEEEe
Confidence 3568999999999987666655421356789999999999877642 11111 00 00111233333 4999999
Q ss_pred cccccccccH-HHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 325 RCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 325 ~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
+++.+..+.. ..+++.+.+.+.+ +++|.+++..
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 9977765421 2466666666655 9999999764
No 197
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.37 E-value=0.0013 Score=66.53 Aligned_cols=127 Identities=15% Similarity=0.195 Sum_probs=84.5
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCC---CCCCccEEEecccccccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY---PSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpf---pd~SFDlV~~s~~ll~~~ 331 (642)
-++|||||=.......- .+ ...|+.+|.++. ...+.+.|....|. ++++||+|.|+.+ +.++
T Consensus 53 lrlLEVGals~~N~~s~--~~--~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV-LNfV 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SG--WFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSLV-LNFV 117 (219)
T ss_pred ceEEeecccCCCCcccc--cC--ceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEEE-EeeC
Confidence 68999999865543332 22 345899999862 12244456666665 3679999999988 8888
Q ss_pred ccHH---HHHHHHHhcccCCcE-----EEEEeCCCCchhhhhhHHhHhhhhhhhhhhhccceEEeeecC----ceEEEEe
Q 006518 332 QKDG---ILLLEVDRVLKPGGY-----FVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD----ETVVWKK 399 (642)
Q Consensus 332 ~d~~---~~L~Ei~RvLKPGG~-----Lvis~p~~~~~~~lr~~e~~~~w~~l~~l~~~lcW~ll~~~~----~~~IwqK 399 (642)
+++. ..++.+++.|+|+|. |++..|.+-... ...-.-+.+..+.+.+++..+..+. ....|++
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~N-----SRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTN-----SRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRK 192 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhc-----ccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEee
Confidence 8874 599999999999999 888887552210 0111224556677888888776543 2345665
Q ss_pred cC
Q 006518 400 TS 401 (642)
Q Consensus 400 ~~ 401 (642)
..
T Consensus 193 ~~ 194 (219)
T PF11968_consen 193 SG 194 (219)
T ss_pred cC
Confidence 43
No 198
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.35 E-value=0.0016 Score=64.64 Aligned_cols=93 Identities=27% Similarity=0.314 Sum_probs=70.4
Q ss_pred eEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCC-ceEEeecccCCCCCCCCccEEEeccccccc
Q 006518 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 256 ~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A----~ergl~-~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
+++|||+|.|.-+..|+=.. +..+++.+|....-+.+. .+-++. +.+....++. +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 79999999999888887543 456799999998776554 344665 7777777777 556678999999865
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEe
Q 006518 331 DQKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
.....++.-+.+.|++||.+++--
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 456678899999999999988853
No 199
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.34 E-value=0.0012 Score=72.74 Aligned_cols=96 Identities=18% Similarity=0.163 Sum_probs=71.0
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEecccccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~SFDlV~~s~~ll~ 329 (642)
.+|||++||+|.++..++... ....|+++|.++.+++.++++ ++. ..+...|+..+....+.||+|+..- .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP--~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP--F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC--C-
Confidence 589999999999999998653 234699999999999888653 443 3466667655422145799999863 1
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 330 WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
..+..++....+.+++||+++++.-
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 2345678887788999999999943
No 200
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.23 E-value=0.00063 Score=69.74 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=62.9
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcccc-ccc-cccccccCCCCCCcccccccccccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGV-LHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-~g~-~~~~ce~~~typrtydl~h~~~~~~~~ 592 (642)
..+|+|+|||.|.++..|.+... .|+-+|-. .-+...-+++- +.. ..|. |.++..+.+||+|-++..+. |
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~-----~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~-~ 115 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGS-----QVTALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQ-W 115 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhh-h
Confidence 46799999999999998875322 34444432 33433334321 111 1232 44555558999998765553 2
Q ss_pred cCCCCCCCchhhhhhhccccCCCceeeeccCc
Q 006518 593 SGHRHRCSTLDIFTEIDRILRPEVSKSNSPIS 624 (642)
Q Consensus 593 ~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~ 624 (642)
. -+...+|-||-|+|+|||.++.|-+.
T Consensus 116 ~-----~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 116 C-----GNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred c-----CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 2 24678999999999999999987544
No 201
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.21 E-value=0.0012 Score=70.41 Aligned_cols=97 Identities=19% Similarity=0.168 Sum_probs=68.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
..+.|||||||.|.++...++.| ..+|.+++.|+ |.+.|++. ++ .+.++.+-+++..+|+ ..|+|++.-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEPM 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEPM 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCch-hccEEEeccc
Confidence 45789999999999999888887 45789999874 88888653 22 2334556677777775 7999999755
Q ss_pred ccccccc-HHHHHHHHHhcccCCcEEEE
Q 006518 327 GVDWDQK-DGILLLEVDRVLKPGGYFVW 353 (642)
Q Consensus 327 ll~~~~d-~~~~L~Ei~RvLKPGG~Lvi 353 (642)
.+-.... .-...-..+|.|||.|.++=
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 3333211 11233346699999998873
No 202
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.19 E-value=0.0012 Score=66.46 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=62.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
++.+|||+-||.|.|+..+++.+ ....|.++|.++..++.+++. ++. +....+|+..+.. .+.||.|++..-
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred cceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 35899999999999999999842 235699999999998776543 443 4456788777765 679999998743
Q ss_pred cccccccHHHHHHHHHhcccCCcEEE
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFV 352 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lv 352 (642)
.....+|....+++|+||.+-
T Consensus 179 -----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 -----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEE
T ss_pred -----HHHHHHHHHHHHHhcCCcEEE
Confidence 222358888999999999874
No 203
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.18 E-value=0.00034 Score=70.27 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=61.7
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhh----cccccc---cc-ccccccCCCCCCccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVG---VL-HDWCEAFPTYPRTYDLVHAEG 587 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl~g---~~-~~~ce~~~typrtydl~h~~~ 587 (642)
+.|||++||.|+++..+.+..... +|+-++-. +.+..+- +.|+-+ ++ .|..+ . .+|.+||+|++.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHH
Confidence 369999999999999887631112 33333332 3333222 345522 22 22222 1 2467899999988
Q ss_pred ccccccCCCCCCCchhhhhhhccccCCCceeeeccC
Q 006518 588 LLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPI 623 (642)
Q Consensus 588 ~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~ 623 (642)
+|.... +...++-++.|+|+|||+++.+-+
T Consensus 76 ~l~~~~------~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 76 VIHHIK------DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHhCC------CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 887654 357899999999999999997543
No 204
>PLN02244 tocopherol O-methyltransferase
Probab=97.16 E-value=0.00026 Score=76.47 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=60.2
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhh----hhcccccc----ccccccccCCCCCCcccccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGFVG----VLHDWCEAFPTYPRTYDLVHAE 586 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~----i~~RGl~g----~~~~~ce~~~typrtydl~h~~ 586 (642)
-..|||++||.|+++..|.+. ... +|+=++-. ..+.. +-++|+.. +-.|.. .++.-+.+||+|.+.
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~-~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARK-YGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-NQPFEDGQFDLVWSM 193 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHh-cCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-cCCCCCCCccEEEEC
Confidence 457999999999999999762 122 33333322 32321 23345422 112332 233334899999987
Q ss_pred cccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
..+.++. +...+|-||-|+|||||.++.+
T Consensus 194 ~~~~h~~------d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 194 ESGEHMP------DKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred CchhccC------CHHHHHHHHHHHcCCCcEEEEE
Confidence 6665543 3457899999999999999875
No 205
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.14 E-value=0.002 Score=69.25 Aligned_cols=101 Identities=23% Similarity=0.194 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-CCceEEeecccCCCCCCCCccEEEecccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg-l~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
.....+|+|.|.|..+..+... ++ .|.+++.....+-.++..- ..+..+-+|+-+- .|. -|+|++-.++.||.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp--~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YP--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CC--CCceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 3578999999999999999984 34 3677888777765554433 3344444454333 343 46999999988887
Q ss_pred ccH-HHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 332 QKD-GILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 332 ~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
++. .++|+++...|+|||.+++.+.+..
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 554 6899999999999999999987544
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.12 E-value=0.0029 Score=65.49 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccCC-CCCCC-CccEE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-PYPSL-SFDML 321 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---------l~~~~~~~da~~L-pfpd~-SFDlV 321 (642)
.+++||=||-|.|..+..+++.. ...+++.+|+++..++.|++-. .++.+...|+... .-..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 56899999999999999998774 4567999999999999987631 2455666665432 22233 89999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 006518 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 322 ~~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+.-.. -...+. -..+++.+.+.|+|||.+++...
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 98643 222111 14699999999999999999764
No 207
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.10 E-value=0.0004 Score=72.26 Aligned_cols=97 Identities=21% Similarity=0.159 Sum_probs=63.5
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhccc-------c--ccccccccccCCCCCCcccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-------F--VGVLHDWCEAFPTYPRTYDLVHAE 586 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RG-------l--~g~~~~~ce~~~typrtydl~h~~ 586 (642)
..|+|++||+|.++..|.+.-.+-+ +|+-+|-. +-|..+-+|. . +-..+.=.+.+|.=+.+||+|.+.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4799999999999988875211111 45555544 4454444331 1 222222345565434799999987
Q ss_pred cccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
..+.... +...+|-||-|+|||||.++.+
T Consensus 153 ~~l~~~~------d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 153 YGLRNVV------DRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred cccccCC------CHHHHHHHHHHHcCcCcEEEEE
Confidence 7765442 4678999999999999998665
No 208
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.08 E-value=0.0046 Score=66.52 Aligned_cols=104 Identities=13% Similarity=-0.019 Sum_probs=70.2
Q ss_pred CCeEEEECCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHHHHcCC----C-ceE--EeecccC----CCC--CCCC
Q 006518 254 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLERGL----P-AMI--GSFASKQ----LPY--PSLS 317 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g---~~~~sV~giD~S~~ml~~A~ergl----~-~~~--~~~da~~----Lpf--pd~S 317 (642)
..+++|+|||.|.=+..|++.- .....++++|+|.++++.+.++-. + +.+ .+++..+ ++- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 4589999999999877766531 123679999999999988765422 2 332 3444322 221 1234
Q ss_pred ccEEEeccccccccccHH--HHHHHHHh-cccCCcEEEEEeCC
Q 006518 318 FDMLHCARCGVDWDQKDG--ILLLEVDR-VLKPGGYFVWTSPL 357 (642)
Q Consensus 318 FDlV~~s~~ll~~~~d~~--~~L~Ei~R-vLKPGG~Lvis~p~ 357 (642)
..+++.....+...+..+ .+|+++++ .|+|||.|+|..-.
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 678887765565544443 58999999 99999999997543
No 209
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0043 Score=65.65 Aligned_cols=102 Identities=17% Similarity=0.076 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---------CceEEeecccCC-CCCCCCccEEE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---------PAMIGSFASKQL-PYPSLSFDMLH 322 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl---------~~~~~~~da~~L-pfpd~SFDlV~ 322 (642)
.+++||-||-|.|..+..+++.. ...+++.+|+++..++.+++... .+.+...|.... .-..++||+|+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 34799999999999999999885 46789999999999999987521 223444444332 22233899999
Q ss_pred ecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 006518 323 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 323 ~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+-.. -.-.+. ...+++.++|.|+++|.++...-
T Consensus 155 ~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 155 VDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 8744 221111 15699999999999999999743
No 210
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.06 E-value=0.0022 Score=66.92 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH--------------------cCCC------------
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--------------------RGLP------------ 300 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e--------------------rgl~------------ 300 (642)
++.++||||||+-.+-..-+.. ...+|+..|.++.-++..++ .|-.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4579999999996664333333 34568899998877653321 1100
Q ss_pred -c-eEEeecccCCC-CCC-----CCccEEEeccccccccccHH---HHHHHHHhcccCCcEEEEEeCCC
Q 006518 301 -A-MIGSFASKQLP-YPS-----LSFDMLHCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 301 -~-~~~~~da~~Lp-fpd-----~SFDlV~~s~~ll~~~~d~~---~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
+ .++..|+...+ +.. +.||+|++.+|+.....+.+ .+++.+.++|||||.|++.....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 1 13445655543 332 35999999999666666664 58999999999999999987654
No 211
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.05 E-value=0.0029 Score=69.12 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=64.0
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCC-C-CC-------------
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-YP------------- 314 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~L-p-fp------------- 314 (642)
.+|||++||+|.++..+++.. ..|+++|.++.+++.|+++ ++ ++.+...|+... + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 469999999999999888763 3699999999999888764 44 466777776542 1 10
Q ss_pred -CCCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 315 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 315 -d~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
...||+|+.---. ..-.+.++..+.+ |++.++++...
T Consensus 285 ~~~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 285 KSYNFSTIFVDPPR---AGLDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred cCCCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEEEeCH
Confidence 2258999876431 1112345555443 78888887653
No 212
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.05 E-value=0.00042 Score=74.43 Aligned_cols=95 Identities=25% Similarity=0.248 Sum_probs=60.3
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cch---hhhhc-ccc---ccccccccccCCCCCCcccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHL---PMILD-RGF---VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l---~~i~~-RGl---~g~~~~~ce~~~typrtydl~h~~~~ 588 (642)
+.|+|+|||.|.|+.+|++.. +-.| +=++.. ..+ ..+-. .+. |-+.+.=-|.++. +.+||+|++.++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g-~~~V---~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAG-AKLV---VGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcC-CCEE---EEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 689999999999999998742 2223 333322 111 01100 010 1111111144555 789999999888
Q ss_pred cccccCCCCCCCchhhhhhhccccCCCceeeecc
Q 006518 589 LSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSP 622 (642)
Q Consensus 589 ~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~ 622 (642)
+-+ .-+...+|-++-|.|+|||.++.+.
T Consensus 199 l~H------~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 199 LYH------RRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred hhc------cCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 753 3456789999999999999999863
No 213
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0041 Score=69.47 Aligned_cols=99 Identities=26% Similarity=0.381 Sum_probs=80.7
Q ss_pred eEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC----CceEEeecccCCCCCCCCccEEEecccccccc
Q 006518 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 256 ~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl----~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
++|-+|||.-.+...+.+.|+. +|+.+|.|+..++....++. ...+...++..+.|++++||+|+--..+-+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999999999988755 58889999999988877763 23467889999999999999999987744443
Q ss_pred ccH---------HHHHHHHHhcccCCcEEEEEeC
Q 006518 332 QKD---------GILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 332 ~d~---------~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.+. ...+.++.|+|+|||+++....
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 332 2357899999999999887665
No 214
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0026 Score=66.30 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=60.4
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCC-CccEEEecccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSL-SFDMLHCARCGVD 329 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~-SFDlV~~s~~ll~ 329 (642)
..+|||||+|.|.+|..|++++ ..|+++|+++.+++..+++. .+..++.+|+...++++. .++.|+++.- ++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlP-Y~ 106 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLP-YN 106 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcCC-Cc
Confidence 4799999999999999999996 34899999999999888774 356778889988888864 5899999855 44
Q ss_pred c
Q 006518 330 W 330 (642)
Q Consensus 330 ~ 330 (642)
.
T Consensus 107 I 107 (259)
T COG0030 107 I 107 (259)
T ss_pred c
Confidence 3
No 215
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.01 E-value=0.0022 Score=67.95 Aligned_cols=105 Identities=20% Similarity=0.152 Sum_probs=66.6
Q ss_pred CCCeEEEECCCCchHHHHHhhc------CCceeEEEEecCCHHHHHHHHHc----CCC---ceEEeecccCCCCC--CCC
Q 006518 253 GVRTILDIGCGYGSFGAHLFSK------ELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLPYP--SLS 317 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~------g~~~~sV~giD~S~~ml~~A~er----gl~---~~~~~~da~~Lpfp--d~S 317 (642)
...+|||-.||+|.|...+.+. ......+.|+|.++.++..|+.+ +.. ..+...|....+.. .+.
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK 125 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 3468999999999998888763 12356799999999998877632 322 22455554433332 478
Q ss_pred ccEEEeccccccc--c-----------------ccH-HHHHHHHHhcccCCcEEEEEeCC
Q 006518 318 FDMLHCARCGVDW--D-----------------QKD-GILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 318 FDlV~~s~~ll~~--~-----------------~d~-~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
||+|+++--+-.. . ... -.++..+.+.|++||++++..|.
T Consensus 126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 9999997431111 0 011 24788899999999999888773
No 216
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.94 E-value=0.0047 Score=67.22 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=62.9
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--------C---C----
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--------Y---P---- 314 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--------f---p---- 314 (642)
.+|||++||+|.++..|++.. ..|+++|.++.+++.|+++ ++ ++.+..+|+.++- + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999888763 3799999999999988764 44 4567777765421 1 0
Q ss_pred -CCCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 315 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 315 -d~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
...||+|+..--.- .-...++..+. +|++.++++...
T Consensus 276 ~~~~~d~v~lDPPR~---G~~~~~l~~l~---~~~~ivYvsC~p 313 (353)
T TIGR02143 276 KSYNCSTIFVDPPRA---GLDPDTCKLVQ---AYERILYISCNP 313 (353)
T ss_pred ccCCCCEEEECCCCC---CCcHHHHHHHH---cCCcEEEEEcCH
Confidence 11379888753311 11133444443 478888888653
No 217
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.93 E-value=0.00039 Score=69.19 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=60.1
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchh----hhhccccc---cccccccccCCCCCCcccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGFV---GVLHDWCEAFPTYPRTYDLVHAEGL 588 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~----~i~~RGl~---g~~~~~ce~~~typrtydl~h~~~~ 588 (642)
-+|||++||.|.++..|.+... +|+-+|.. .-+. .+-++|+- ....|..+ + .++.+||+|-+...
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~-----~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~ 104 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF-----DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVV 104 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC-----EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecc
Confidence 4799999999999999987432 44444443 2222 12334442 23344433 2 23678999999877
Q ss_pred cccccCCCCCCCchhhhhhhccccCCCceee
Q 006518 589 LSLESGHRHRCSTLDIFTEIDRILRPEVSKS 619 (642)
Q Consensus 589 ~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~ 619 (642)
|-.. +.-....++-+|-|.|+|||+++
T Consensus 105 ~~~~----~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 105 LMFL----EAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred hhhC----CHHHHHHHHHHHHHHcCCCcEEE
Confidence 6432 23456789999999999999953
No 218
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.92 E-value=0.00041 Score=68.96 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=58.9
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhh----hhccccc--cccccccccCCCCCCccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGFV--GVLHDWCEAFPTYPRTYDLVHAEGLL 589 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~----i~~RGl~--g~~~~~ce~~~typrtydl~h~~~~~ 589 (642)
..|||+|||+|.++..|.+.+ ..|+-+|.. ..+.. +-+.|+- ....|.. .++ ++.+||+|.+..+|
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g-----~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~I~~~~~~ 104 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG-----YDVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAA-LNEDYDFIFSTVVF 104 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC-----CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hcc-ccCCCCEEEEeccc
Confidence 479999999999999998643 245555553 33332 2233441 1122321 222 35689999988877
Q ss_pred ccccCCCCCCCchhhhhhhccccCCCcee
Q 006518 590 SLESGHRHRCSTLDIFTEIDRILRPEVSK 618 (642)
Q Consensus 590 ~~~~~~~~~c~~~~~~~e~dRilrP~g~~ 618 (642)
.... .-.+..++-++.|.|+|||++
T Consensus 105 ~~~~----~~~~~~~l~~~~~~LkpgG~l 129 (195)
T TIGR00477 105 MFLQ----AGRVPEIIANMQAHTRPGGYN 129 (195)
T ss_pred ccCC----HHHHHHHHHHHHHHhCCCcEE
Confidence 5442 235678999999999999984
No 219
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.92 E-value=0.0026 Score=63.02 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=66.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeeccc-CCC---CCCCCccEEE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASK-QLP---YPSLSFDMLH 322 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~--~~~~~~da~-~Lp---fpd~SFDlV~ 322 (642)
.+.+|||+-||+|.++...+.+|. .+++.+|.+...++..+++ +.. ..+...|+. .++ .....||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 358999999999999999999984 4688999999988776654 332 344555532 222 2467899999
Q ss_pred eccccccccccHHHHHHHHH--hcccCCcEEEEEeC
Q 006518 323 CARCGVDWDQKDGILLLEVD--RVLKPGGYFVWTSP 356 (642)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~--RvLKPGG~Lvis~p 356 (642)
+--- +........++..+. .+|+++|.+++...
T Consensus 120 lDPP-Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 120 LDPP-YAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp E--S-TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ECCC-cccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 8755 332211255777776 79999999999754
No 220
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.91 E-value=0.00036 Score=71.99 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=62.5
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----ccccc---ccc-cccccCC-CCCCcccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VLH-DWCEAFP-TYPRTYDLVHAE 586 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl~g---~~~-~~ce~~~-typrtydl~h~~ 586 (642)
..|||+|||.|.++..|.+.. -+|+-++.. ..+..+-+ .|+.. +.+ |..+ ++ ..+.+||+|.+.
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g-----~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~-l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELG-----HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD-IAQHLETPVDLILFH 119 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcC-----CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH-HhhhcCCCCCEEEeh
Confidence 489999999999999998743 355555553 44443322 34422 111 2222 22 335899999998
Q ss_pred cccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
.+|.... +...++-|+-|+|+|||.++..
T Consensus 120 ~vl~~~~------~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 120 AVLEWVA------DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hHHHhhC------CHHHHHHHHHHHcCCCeEEEEE
Confidence 8887553 3357899999999999999753
No 221
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.00043 Score=66.97 Aligned_cols=136 Identities=16% Similarity=0.284 Sum_probs=85.2
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-CCC--ceEEeecc-------cCCCCCCCCccEEEe
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLP--AMIGSFAS-------KQLPYPSLSFDMLHC 323 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er-gl~--~~~~~~da-------~~Lpfpd~SFDlV~~ 323 (642)
+++||++|.|.-.++..|.....+..+|...|-++..++..++- ..+ ..+....+ .+......+||.|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 37899999996655555555556778899999999888655432 111 11110101 112234458999999
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCchhhhhhHHhHhhhhhhhhhhhccceEEeeec-CceEEEEecC
Q 006518 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ-DETVVWKKTS 401 (642)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~w~~l~~l~~~lcW~ll~~~-~~~~IwqK~~ 401 (642)
+.| +-+.+..+.++..|.+.|+|.|..++..|-... ..+.+..+.+..++....+. .+..|||+..
T Consensus 110 ADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~-----------sL~kF~de~~~~gf~v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 110 ADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ-----------SLQKFLDEVGTVGFTVCLEENYDEAIWQRHG 176 (201)
T ss_pred ccc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccc-----------hHHHHHHHHHhceeEEEecccHhHHHHHHHH
Confidence 999 545555577999999999999998888774321 12222334444555554443 3556777654
No 222
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.83 E-value=0.014 Score=63.07 Aligned_cols=95 Identities=14% Similarity=0.128 Sum_probs=66.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~ 332 (642)
++.++|||||++|.++..|+++|. .|+++|..+ |-.... ....+.....+..+..-+.+.+|.++|-.+ .
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cCHhhh-CCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 568999999999999999999974 699999654 333322 233455555554443322668999999855 5
Q ss_pred cHHHHHHHHHhcccCC--cEEEEEeCC
Q 006518 333 KDGILLLEVDRVLKPG--GYFVWTSPL 357 (642)
Q Consensus 333 d~~~~L~Ei~RvLKPG--G~Lvis~p~ 357 (642)
.|.+.+.-|.+.|..| ..+|+.--.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnLKl 307 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNLKL 307 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEEEc
Confidence 5777778888888776 466665543
No 223
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.79 E-value=0.015 Score=62.94 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=80.3
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~SFDlV~~s~~l 327 (642)
+.+|||+=+|.|.|+..++..+.. .|+++|+++..++.++++ ++. +....+|+...+..-+.||-|++...
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC-
Confidence 579999999999999999998744 399999999999887764 333 44678888888776578999999854
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
.....++....+.+|+||.+-+....+..
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 23356888888999999999998876544
No 224
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.78 E-value=0.0054 Score=64.02 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=55.4
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CC----ceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LP----AMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg--l~----~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
+...|||||.|||.+|..|++.+ ..|++++.++.|+....+|+ .+ ..+..+|....++| .||.++++.-
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNlP 132 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNLP 132 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeeccCC
Confidence 44899999999999999999996 45899999999999888774 33 34566677666666 4999999754
No 225
>PRK08317 hypothetical protein; Provisional
Probab=96.76 E-value=0.0012 Score=65.83 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=61.5
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc--cccccc----ccccccCCCCCCccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVL----HDWCEAFPTYPRTYDLVHAEGLL 589 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Gl~g~~----~~~ce~~~typrtydl~h~~~~~ 589 (642)
.+|+|++||.|.++..+.+.-.+- -+|+-++.. +.+..+-++ +.-... .|.. .++.-+.+||+||+..+|
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~--~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPE--GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCC--cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechh
Confidence 479999999999999887521010 134444433 444444444 111111 1221 123223789999999888
Q ss_pred ccccCCCCCCCchhhhhhhccccCCCceeeeccC
Q 006518 590 SLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPI 623 (642)
Q Consensus 590 ~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~ 623 (642)
.... +...++-++-|+|+|||+++....
T Consensus 98 ~~~~------~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 98 QHLE------DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hccC------CHHHHHHHHHHHhcCCcEEEEEec
Confidence 7654 356789999999999999987543
No 226
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=96.74 E-value=0.0006 Score=71.83 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=60.0
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchh----hhhccccc--cccccccccCCCCCCcccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGFV--GVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~----~i~~RGl~--g~~~~~ce~~~typrtydl~h~~~~~~ 590 (642)
+|||+|||.|.++..|.+.. ..|+-+|.. .-+. .+-+.|+- -...|.-+ .+ .+..||+|-+..+|.
T Consensus 123 ~vLDlGcG~G~~~~~la~~g-----~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLG-----FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVLM 195 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchhh
Confidence 79999999999999998633 245555543 2232 22345551 11122221 11 268899999988776
Q ss_pred cccCCCCCCCchhhhhhhccccCCCceeee
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
.. ++-.+..++-+|-|+|+|||+++.
T Consensus 196 ~l----~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 196 FL----NRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hC----CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 44 234577899999999999999543
No 227
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.73 E-value=0.0025 Score=66.54 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=54.4
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcccc-cccc-ccccccCCCCCCccccccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVL-HDWCEAFPTYPRTYDLVHAEGLLSLES 593 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-~g~~-~~~ce~~~typrtydl~h~~~~~~~~~ 593 (642)
.+|+|+|||.|.+++.|.+.-...=-.+|+-+|-. ..+..+-+|.- +... .|- +.+|.=+.+||+|.+ +|+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~lp~~~~sfD~I~~--~~~--- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HRLPFADQSLDAIIR--IYA--- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-ccCCCcCCceeEEEE--ecC---
Confidence 56999999999999998752111100245555543 55555544421 1111 121 223433478999975 222
Q ss_pred CCCCCCCchhhhhhhccccCCCceeeec
Q 006518 594 GHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 594 ~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
...+-|+.|+|+|||+++..
T Consensus 161 --------~~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 161 --------PCKAEELARVVKPGGIVITV 180 (272)
T ss_pred --------CCCHHHHHhhccCCCEEEEE
Confidence 12457999999999999864
No 228
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.72 E-value=0.0076 Score=66.45 Aligned_cols=103 Identities=17% Similarity=0.096 Sum_probs=76.7
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccCC-C---CCCCCccEEE
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-P---YPSLSFDMLH 322 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl---~~~~~~~da~~L-p---fpd~SFDlV~ 322 (642)
+++|||+=|=||.|+.+.+..|. .+++.+|.|...++.|+++ |+ +..++++|+-.+ . -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 58999999999999999998874 3689999999999999875 33 345777775433 2 2344899999
Q ss_pred eccccccc--------cccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 323 CARCGVDW--------DQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 323 ~s~~ll~~--------~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
.---.+.- ..+...++....++|+|||.++++.-..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 85322221 1233468889999999999999987543
No 229
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.71 E-value=0.0014 Score=67.46 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=63.8
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-CchhhhhccccccccccccccCCCCCCcccccccccccccccCC
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl~g~~~~~ce~~~typrtydl~h~~~~~~~~~~~ 595 (642)
..|+|+|||.|.++.+|.+. .|- ..|+=++-. ..+...-++++-=+..|- +.++ .+.+||+|++..+|-...
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~-~p~--~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~-- 103 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARR-WPG--AVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWVP-- 103 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhCC--
Confidence 67999999999999999863 222 234444443 555556666642122222 2332 236899999988886543
Q ss_pred CCCCCchhhhhhhccccCCCceeeec
Q 006518 596 RHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 596 ~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
+...++-|+-|+|+|||+++.+
T Consensus 104 ----d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 104 ----EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ----CHHHHHHHHHHhCCCCcEEEEE
Confidence 3467899999999999999875
No 230
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.63 E-value=0.0013 Score=65.74 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=61.0
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhccc---cccccccccccCCCCCCcccccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG---FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RG---l~g~~~~~ce~~~typrtydl~h~~~~~~~~ 592 (642)
..|||+|||.|.|...|.+. .+- ..|+-++.. ..+....++. +.-+..|. +.++..+.+||+|.+..++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~-~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKR-FPQ--AEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHh-CCC--CcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc
Confidence 57999999999999999863 211 112333322 2222222221 11122222 3345456899999998877543
Q ss_pred cCCCCCCCchhhhhhhccccCCCceeeeccCc
Q 006518 593 SGHRHRCSTLDIFTEIDRILRPEVSKSNSPIS 624 (642)
Q Consensus 593 ~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~ 624 (642)
.+...++-++.|+|+|||.++.+...
T Consensus 112 ------~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 112 ------DDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred ------cCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 34678999999999999999986543
No 231
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=96.62 E-value=0.0013 Score=72.38 Aligned_cols=97 Identities=20% Similarity=0.267 Sum_probs=63.4
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc--ccccccccccccCCCCCCccccccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Gl~g~~~~~ce~~~typrtydl~h~~~~~~~~~ 593 (642)
..|+|+|||.|+++..+.+. ..+ .|+-++-. ..+..+-+| |+ .+ .-.+..+...+.+||.|.+.++|.+..
T Consensus 169 ~rVLDIGcG~G~~a~~la~~-~g~---~V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEH-YGV---SVVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CEEEEeCCCccHHHHHHHHH-CCC---EEEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEeCchhhCC
Confidence 37999999999999988752 232 34444433 555554443 32 11 111122222357899999988886542
Q ss_pred CCCCCCCchhhhhhhccccCCCceeeeccC
Q 006518 594 GHRHRCSTLDIFTEIDRILRPEVSKSNSPI 623 (642)
Q Consensus 594 ~~~~~c~~~~~~~e~dRilrP~g~~~~~~~ 623 (642)
.-....++-++.|+|+|||.++.+-|
T Consensus 243 ----~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 243 ----PKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred ----hHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 23456889999999999999998643
No 232
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.61 E-value=0.00049 Score=72.33 Aligned_cols=101 Identities=18% Similarity=0.273 Sum_probs=64.5
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchh----hhhccccccccccccccCCCCCCccccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~----~i~~RGl~g~~~~~ce~~~typrtydl~h~~~~~~~ 591 (642)
..|||+|||.||++-.+.+. ..+ +|+=++-. ++.. -|-++||-....=-+.-+...|-+||-|=+-+.|.+
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~-~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Eh 139 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAER-YGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEH 139 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHH-H-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGG
T ss_pred CEEEEeCCCccHHHHHHHHH-cCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhh
Confidence 38999999999999999873 344 34433333 5555 356788854433222333334448999888888876
Q ss_pred ccCCCCCCCchhhhhhhccccCCCceeeeccCch
Q 006518 592 ESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIST 625 (642)
Q Consensus 592 ~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~~ 625 (642)
.. +=+...++-.++|+|+|||.++..-|..
T Consensus 140 vg----~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 140 VG----RKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp TC----GGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred cC----hhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 53 2456688999999999999998765543
No 233
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.60 E-value=0.0013 Score=68.52 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=59.0
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhccc----cccc-cccccccCCCCCCcccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGV-LHDWCEAFPTYPRTYDLVHAEGLLS 590 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----l~g~-~~~~ce~~~typrtydl~h~~~~~~ 590 (642)
..|||++||+|+++..|.+. .. ..|+-++.. +.+...-+|- -+-. ..|.. ..+.=+.+||+|++...+-
T Consensus 54 ~~VLDiGcG~G~~a~~la~~-~~---~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEK-YG---AHVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CEEEEEcCCCChhhHHHHhh-cC---CEEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cCCCCCCCeEEEEEhhhHH
Confidence 46999999999999888642 22 234444433 3333333321 1111 11221 1221137999999965554
Q ss_pred cccCCCCCCCchhhhhhhccccCCCceeeeccC
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPEVSKSNSPI 623 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~ 623 (642)
+.. .-+...++-|+-|+|+|||+++.+.+
T Consensus 129 h~~----~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 HLS----YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hCC----HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 331 12566899999999999999998754
No 234
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.57 E-value=0.002 Score=69.16 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=58.3
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhh----hccccccccccccccCCCCCCccccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGl~g~~~~~ce~~~typrtydl~h~~~~~~~ 591 (642)
+.|+|+|||.|.++.+|+.. .+.-|.-|=|...- .+...+ ...+-+.+..-=-|.++. +.+||+|-+.+++-+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhc
Confidence 68999999999998888763 22223333222211 111111 001111111111133333 347999999988764
Q ss_pred ccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 592 ESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 592 ~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
. -+..++|-|+-|+|||||.++.+
T Consensus 201 ~------~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 R------KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred c------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 3 46679999999999999999976
No 235
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.54 E-value=0.02 Score=65.41 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=47.9
Q ss_pred CCeEEEECCCCchHHHHHhhcCC-------ceeEEEEecCCHHHHHHHHHc----C-CCceEEeecccCC-----CCCCC
Q 006518 254 VRTILDIGCGYGSFGAHLFSKEL-------LTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQL-----PYPSL 316 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~-------~~~sV~giD~S~~ml~~A~er----g-l~~~~~~~da~~L-----pfpd~ 316 (642)
..+|||.+||+|.|...++++.. ....+++.|+++..+..++.+ + ....+...+.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 46899999999999998876521 136789999999999887654 1 1222222221111 11124
Q ss_pred CccEEEeccc
Q 006518 317 SFDMLHCARC 326 (642)
Q Consensus 317 SFDlV~~s~~ 326 (642)
.||+|+++--
T Consensus 112 ~fD~IIgNPP 121 (524)
T TIGR02987 112 LFDIVITNPP 121 (524)
T ss_pred cccEEEeCCC
Confidence 7999999843
No 236
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.52 E-value=0.0053 Score=65.36 Aligned_cols=73 Identities=8% Similarity=-0.084 Sum_probs=55.0
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCC--CCCC--CccEEEeccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLP--YPSL--SFDMLHCARC 326 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---l~~~~~~~da~~Lp--fpd~--SFDlV~~s~~ 326 (642)
+..+||.+||.|..+..+++.......|+|+|.++++++.|+++- -++.+...+...+. .+++ +||.|++...
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEECCC
Confidence 369999999999999999988533578999999999999998753 24556666655543 1222 7999998643
No 237
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.51 E-value=0.00048 Score=61.01 Aligned_cols=98 Identities=23% Similarity=0.236 Sum_probs=57.9
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----ccccc----ccccccccCCCCCCccccccccc-
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEG- 587 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl~g----~~~~~ce~~~typrtydl~h~~~- 587 (642)
.|+|+|||.|.++.+|.+. .+-. .|+=++-. ..+...-+ .+.-. +..|+ +.-...+-.||+|.+.+
T Consensus 4 ~vLDlGcG~G~~~~~l~~~-~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARL-FPGA--RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp EEEEETTTTSHHHHHHHHH-HTTS--EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSG
T ss_pred EEEEEcCcCCHHHHHHHhc-CCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCC
Confidence 6899999999999999861 1222 23444433 33332222 23322 22344 22244455699999988
Q ss_pred ccccccCCCCCCCchhhhhhhccccCCCceeeecc
Q 006518 588 LLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSP 622 (642)
Q Consensus 588 ~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~ 622 (642)
.+..+. +.-....+|=++-+.|+|||+++.+.
T Consensus 80 ~~~~~~---~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLL---PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCC---HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccc---chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 222222 11233467888999999999999763
No 238
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.49 E-value=0.0019 Score=65.10 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=57.0
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhh----cccc--ccccccccccCCCCCCccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl--~g~~~~~ce~~~typrtydl~h~~~~~ 589 (642)
.+|+|++||.|.++..|.+.-.+- .+|+=++-. +.+...- +.++ +-+++.=.+.++.-+.+||+|++...+
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 479999999999999887521111 123333332 2222211 2233 122221122333223799999987666
Q ss_pred ccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 590 SLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 590 ~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
.... +...++-|+-|+|+|||.++..
T Consensus 125 ~~~~------~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 125 RNVP------DYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred ccCC------CHHHHHHHHHHHcCcCeEEEEE
Confidence 5433 3457889999999999999753
No 239
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.48 E-value=0.0074 Score=61.00 Aligned_cols=99 Identities=17% Similarity=0.091 Sum_probs=56.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----------CC---CceEEeecccCCCCCC---
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------GL---PAMIGSFASKQLPYPS--- 315 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er-----------gl---~~~~~~~da~~Lpfpd--- 315 (642)
+....+|||||.|......+-.. ......|+|..+...+.|.+. |. ++.+..+|....++..
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 34799999999999877666442 234478999998877655421 22 2334444443322111
Q ss_pred CCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEE
Q 006518 316 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 316 ~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis 354 (642)
..-|+|++++.. +.++....|.++..-||+|-+++-.
T Consensus 121 s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 121 SDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 236999998753 3455566788888999998887643
No 240
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0071 Score=57.84 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=57.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~SFDlV~~s~~ 326 (642)
.+..++|+|||.|-+....+-. ..-.+.|+|+.++.++.+.++ .+++.+.+.+...+-+..+.||.++.+.-
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 4588999999999988555433 345799999999999887654 35566788888888888899999998754
No 241
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.46 E-value=0.02 Score=58.03 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=77.4
Q ss_pred hhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC----CceEEee
Q 006518 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PAMIGSF 306 (642)
Q Consensus 231 ~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl----~~~~~~~ 306 (642)
..+++..++.+. .++.+||.||-|-|.....+-++... .-+-++.++..++..++.|. ++.+..+
T Consensus 88 tpiMha~A~ai~---------tkggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~ek~nViil~g 156 (271)
T KOG1709|consen 88 TPIMHALAEAIS---------TKGGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWREKENVIILEG 156 (271)
T ss_pred hHHHHHHHHHHh---------hCCceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhcccccccceEEEec
Confidence 345556666555 24589999999999999888776432 34568999999999887763 2333222
Q ss_pred ccc-CC-CCCCCCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEE
Q 006518 307 ASK-QL-PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 307 da~-~L-pfpd~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis 354 (642)
-=+ .+ .++|+.||-|+--.- -.+-++...+.+.+.|+|||+|.|-+-
T Consensus 157 ~WeDvl~~L~d~~FDGI~yDTy-~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 157 RWEDVLNTLPDKHFDGIYYDTY-SELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred chHhhhccccccCcceeEeech-hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 111 12 367889999986532 244456667888999999999998764
No 242
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.45 E-value=0.02 Score=59.58 Aligned_cols=103 Identities=13% Similarity=0.055 Sum_probs=72.7
Q ss_pred hhhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEee
Q 006518 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSF 306 (642)
Q Consensus 230 ~~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg---l~~~~~~~ 306 (642)
.....+.+.+.+.... ...|||||+|+|.+|..|++.+ .+++++|.++.+++..+++. .++.+...
T Consensus 15 ~~~~~~~Iv~~~~~~~--------~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~ 83 (262)
T PF00398_consen 15 DPNIADKIVDALDLSE--------GDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVING 83 (262)
T ss_dssp HHHHHHHHHHHHTCGT--------TSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES
T ss_pred CHHHHHHHHHhcCCCC--------CCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeec
Confidence 3455667777665443 3899999999999999999986 56999999999999888753 46778888
Q ss_pred cccCCCCCC---CCccEEEeccccccccccHHHHHHHHHhcccC
Q 006518 307 ASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKP 347 (642)
Q Consensus 307 da~~Lpfpd---~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKP 347 (642)
|+..+..++ +.-..|+++.- +.. ...++.++...-+.
T Consensus 84 D~l~~~~~~~~~~~~~~vv~NlP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGNLP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEEET-GTG---HHHHHHHHHHHGGG
T ss_pred chhccccHHhhcCCceEEEEEec-ccc---hHHHHHHHhhcccc
Confidence 888877654 45567777643 221 23466666653333
No 243
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.43 E-value=0.0066 Score=64.32 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=68.8
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccC-CC--CCCCCccEEEe
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQ-LP--YPSLSFDMLHC 323 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl---~~~~~~~da~~-Lp--fpd~SFDlV~~ 323 (642)
.++|||+=|=||.|+.+.+..| ..+++.+|.|..+++.++++ |+ ...+...|+.. +. -..+.||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4799999999999999988776 45689999999999988765 43 34566666543 21 12458999998
Q ss_pred cccccc-----ccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 324 ARCGVD-----WDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 324 s~~ll~-----~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
---.+. ...+...++..+.++|+|||.++++.-..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 432121 11233468888999999999998876543
No 244
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.40 E-value=0.019 Score=58.50 Aligned_cols=94 Identities=23% Similarity=0.290 Sum_probs=69.5
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A----~ergl~-~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
..+++|||+|.|.-+..|+=. .+...++-+|....-+.+. .+-+++ +.+...-++.+.-..+-||+|+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc--
Confidence 579999999999999988732 2445699999986655443 355776 77888888877643222999998765
Q ss_pred cccccHHHHHHHHHhcccCCcEEEE
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVW 353 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvi 353 (642)
.+...++.-....+|+||.+++
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchh
Confidence 4455677778889999998765
No 245
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.36 E-value=0.002 Score=68.01 Aligned_cols=95 Identities=18% Similarity=0.131 Sum_probs=57.2
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----cccccccccccccC-CCCCCcccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAF-PTYPRTYDLVHAEGLLS 590 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl~g~~~~~ce~~-~typrtydl~h~~~~~~ 590 (642)
.+|||+|||.|.++.++.... . -.|+-++-. ..+....+ .|+-......+... ...+..||+|.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g--~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLG--A--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcC--C--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 579999999999887776421 1 133333332 22322222 12211122222212 22246899999865543
Q ss_pred cccCCCCCCCchhhhhhhccccCCCceeeeccCc
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIS 624 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~ 624 (642)
. +..++-++-|+|+|||+++.|-|.
T Consensus 237 ~---------l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 237 V---------IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred H---------HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 2 337888999999999999999774
No 246
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.34 E-value=0.011 Score=65.01 Aligned_cols=97 Identities=8% Similarity=0.009 Sum_probs=72.0
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC-CCCCCccEEEeccccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLHCARCGV 328 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lp-fpd~SFDlV~~s~~ll 328 (642)
-+|||+.||+|..+..++.+......|+++|.++..++.++++ ++ ++.+...|+..+- ...+.||+|..-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--C
Confidence 4899999999999999998721235699999999999887654 33 2456666665442 2235799998753 2
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
..+..++..+.+.+++||++.++.-
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2345699999999999999999843
No 247
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.31 E-value=0.0028 Score=55.31 Aligned_cols=90 Identities=26% Similarity=0.245 Sum_probs=46.0
Q ss_pred EecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc----ccc--ccc-ccccccCCCCC-Ccccccccccccc
Q 006518 520 LDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV--GVL-HDWCEAFPTYP-RTYDLVHAEGLLS 590 (642)
Q Consensus 520 ~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl~--g~~-~~~ce~~~typ-rtydl~h~~~~~~ 590 (642)
||+|||.|.+...|++. . -...++=+|-. +-+..+-+| +.. -.. .+--+.+...+ .+||+|.+.++|.
T Consensus 1 LdiGcG~G~~~~~l~~~-~--~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE-L--PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHH-C---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHh-C--CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999873 2 23344444433 333222221 210 011 11112233333 5999999999998
Q ss_pred cccCCCCCCCchhhhhhhccccCCCcee
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPEVSK 618 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~g~~ 618 (642)
... .+..++-.+-++|+|||.+
T Consensus 78 ~l~------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLE------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-------HHHHHHHHTTT-TSS-EE
T ss_pred hhh------hHHHHHHHHHHHcCCCCCC
Confidence 763 5678999999999999975
No 248
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=96.30 E-value=0.0032 Score=67.80 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=68.0
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc----cc---ccccccccccCCCCCCcccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---~g~~~~~ce~~~typrtydl~h~~~~ 588 (642)
..|+|+|||.|.|+..|...+ .+|+-+|.. ..+.++-++ ++ |-..+.=.|.++..+.+||+|=+..+
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g-----~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMG-----ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 379999999999999887532 256666654 444444333 22 22222223556655689999999888
Q ss_pred cccccCCCCCCCchhhhhhhccccCCCceeeeccCc
Q 006518 589 LSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIS 624 (642)
Q Consensus 589 ~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~ 624 (642)
+.+.. +...+|-|+-|+|+|||.++.+-+.
T Consensus 208 LeHv~------d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 208 IEHVA------NPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred HHhcC------CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 87654 4578999999999999999988654
No 249
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.033 Score=57.29 Aligned_cols=129 Identities=16% Similarity=0.242 Sum_probs=88.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceE-EeecccCCC---CCCCCccEEEeccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI-GSFASKQLP---YPSLSFDMLHCARCGV 328 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~-~~~da~~Lp---fpd~SFDlV~~s~~ll 328 (642)
+++.+||||+-||.|+..++++|. ..|+++|..-.++..-.+....+.. ...++..+. +.+ ..|+++|--+++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~-~~d~~v~DvSFI 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTE-KPDLIVIDVSFI 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHccc-CCCeEEEEeehh
Confidence 468999999999999999999974 5799999999888777666555443 333444332 333 678999986633
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCch--------hhhhhHH-hHhhhhhhhhhhhccceEEe
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ--------AFLRNKE-NQKRWNFVRDFVENLCWELV 388 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~--------~~lr~~e-~~~~w~~l~~l~~~lcW~ll 388 (642)
. ...+|..+..+++|+|.++.-.-+.... +.+++.+ ....-..+..++...+|...
T Consensus 156 S----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 156 S----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred h----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 3 4679999999999999988766543221 1122222 22334566667777778765
No 250
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.27 E-value=0.0032 Score=64.99 Aligned_cols=100 Identities=18% Similarity=0.091 Sum_probs=70.0
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcccc----cc--ccccccccCCCCCCccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF----VG--VLHDWCEAFPTYPRTYDLVHAEGLL 589 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl----~g--~~~~~ce~~~typrtydl~h~~~~~ 589 (642)
-+|||..||+|=+|..+.+.- + .-.|+-+|-. +-|-+.-+|-- .+ ..+-=-|.+|+-+.|||++=++..|
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~-g--~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSV-G--TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CEEEEecCCccHHHHHHHHhc-C--CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 479999999999999998742 2 3344555543 55655555433 22 1122235688666999999887766
Q ss_pred ccccCCCCCCCchhhhhhhccccCCCceeeeccCch
Q 006518 590 SLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIST 625 (642)
Q Consensus 590 ~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~~ 625 (642)
-.. =+++..|=||-|||+|||.++.-.++.
T Consensus 130 rnv------~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 130 RNV------TDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred hcC------CCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 644 367899999999999999887766654
No 251
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.056 Score=53.89 Aligned_cols=102 Identities=20% Similarity=0.184 Sum_probs=70.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCceEEeecccCC-CCCCC--CccEEEe
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQL-PYPSL--SFDMLHC 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----g--l~~~~~~~da~~L-pfpd~--SFDlV~~ 323 (642)
.+.++||+=+|+|.++...+.+|. ..++.+|.+...++..+++ + ....+...|+... +.... .||+|+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 358999999999999999999984 4678899999988877654 3 3445555565532 22222 4999998
Q ss_pred cccccccc-ccHHHHHHH--HHhcccCCcEEEEEeCC
Q 006518 324 ARCGVDWD-QKDGILLLE--VDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 324 s~~ll~~~-~d~~~~L~E--i~RvLKPGG~Lvis~p~ 357 (642)
--- ++.. -+....+.. -..+|+|+|.+++....
T Consensus 121 DPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 121 DPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 765 4421 111223333 56789999999997553
No 252
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.19 E-value=0.05 Score=55.74 Aligned_cols=99 Identities=16% Similarity=0.107 Sum_probs=70.9
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC--CceEEeeccc-CCC-----CCCCCccE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL--PAMIGSFASK-QLP-----YPSLSFDM 320 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e----rgl--~~~~~~~da~-~Lp-----fpd~SFDl 320 (642)
++++.||||.=||..+..+|..-.....|+++|++++..+.+.+ .|+ .+.+..+.+. .|+ .+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 35899999988888877777664456789999999988876643 243 2334444332 221 45689999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 006518 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
|+.- +|.++-...+.+..++||+||.+++.-
T Consensus 153 aFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 9753 455555678999999999999999853
No 253
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.10 E-value=0.0064 Score=62.53 Aligned_cols=94 Identities=19% Similarity=0.278 Sum_probs=57.9
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcccc--cccc-ccccccCCCCCCccccccccccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF--VGVL-HDWCEAFPTYPRTYDLVHAEGLLSL 591 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl--~g~~-~~~ce~~~typrtydl~h~~~~~~~ 591 (642)
-.+|+|+|||.|.++..|.+. .+- -+|+=++-. .-+...-++ + +.++ .|-. .+. .+.+||+|+++..|..
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~-~~~--~~v~gvD~s~~~i~~a~~~-~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVER-WPA--ARITGIDSSPAMLAEARSR-LPDCQFVEADIA-SWQ-PPQALDLIFANASLQW 105 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHh-CCCCeEEECchh-ccC-CCCCccEEEEccChhh
Confidence 468999999999999888763 121 133333332 222222121 1 1111 1211 111 2368999999888764
Q ss_pred ccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 592 ESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 592 ~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
.. +...++-+|-|+|+|||.++.+
T Consensus 106 ~~------d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 106 LP------DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CC------CHHHHHHHHHHhcCCCcEEEEE
Confidence 43 3568999999999999999875
No 254
>PTZ00146 fibrillarin; Provisional
Probab=96.10 E-value=0.0053 Score=65.13 Aligned_cols=105 Identities=14% Similarity=0.038 Sum_probs=62.3
Q ss_pred CCCCCCCCcceEEEecCcCchhhhhhhhcc---CCCcEEEEeecCCCCCchhhhhcc-ccccccccccccC--CCCCCcc
Q 006518 507 EDPSPPYNMVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAF--PTYPRTY 580 (642)
Q Consensus 507 ~~~~~~~~~~rnv~Dm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~i~~R-Gl~g~~~~~ce~~--~typrty 580 (642)
+.+.+..+. +|||++||.|+|...|.+. +-.|+.+-+-|....+.+.++-+| +++.+..|-+.+. ...+-++
T Consensus 126 ~~l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 126 ANIPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ceeccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCC
Confidence 334455553 7999999999999988863 122444433322111234444343 6677777876542 1112357
Q ss_pred cccccccccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 581 DLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 581 dl~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
|+|-++-. . .=....+++|+.|+|+|||+++.+
T Consensus 204 DvV~~Dva----~----pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA----Q----PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC----C----cchHHHHHHHHHHhccCCCEEEEE
Confidence 87755331 1 012235667999999999999985
No 255
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.036 Score=60.52 Aligned_cols=107 Identities=19% Similarity=0.252 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHHHH----cCCCc-eEEeecccCCC--CCC-CCccEEEe
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLE----RGLPA-MIGSFASKQLP--YPS-LSFDMLHC 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~-~~sV~giD~S~~ml~~A~e----rgl~~-~~~~~da~~Lp--fpd-~SFDlV~~ 323 (642)
++.+|||+.++.|.=|.++++..-. ...|+++|.++.-++...+ .|+.. .+...|...++ .+. +.||.|+.
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLl 235 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILL 235 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEE
Confidence 5589999999999999999887432 2346999999887765543 36653 45666665554 222 35999995
Q ss_pred ----ccc-ccccccc----------------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 324 ----ARC-GVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 324 ----s~~-ll~~~~d----------------~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
+.. .++-.++ ..++|....++|||||.++.++-...
T Consensus 236 DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 236 DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 221 1211111 12478899999999999999986544
No 256
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.08 E-value=0.0056 Score=60.66 Aligned_cols=98 Identities=16% Similarity=0.094 Sum_probs=59.9
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhccc-----cccccccccccCCCCCCcccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RG-----l~g~~~~~ce~~~typrtydl~h~~~~~~ 590 (642)
.+|+|++||.|.++.++... .+. .-+++-++.. ..+..+-++. +--+..|-.+ .+.-+.+||+|++...+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~-~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKS-APD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHh-cCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeC
Confidence 58999999999999998763 221 0123333332 3333333332 1111222222 232246899999876664
Q ss_pred cccCCCCCCCchhhhhhhccccCCCceeeeccC
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPEVSKSNSPI 623 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~ 623 (642)
. -.....++-++-++|+|||+++....
T Consensus 118 ~------~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 118 N------VTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred C------cccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3 34577899999999999999986543
No 257
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.03 Score=56.58 Aligned_cols=99 Identities=15% Similarity=0.028 Sum_probs=66.1
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEEec
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~SFDlV~~s 324 (642)
++.+|+|+|+-+|+++..+++.......|+++|+.+-- --..+.+.++|...-+ +....+|+|+|-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD 118 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSD 118 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------cCCCceEEeeeccCccHHHHHHHHcCCCCcceEEec
Confidence 46899999999999999999875444558899987521 1123566666665443 344557999974
Q ss_pred ccc---ccccccH-------HHHHHHHHhcccCCcEEEEEeCC
Q 006518 325 RCG---VDWDQKD-------GILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 325 ~~l---l~~~~d~-------~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
.+- -++.-|. ..++.-...+|+|||.|++-++-
T Consensus 119 ~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 119 MAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred CCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 321 1222121 23566677799999999998763
No 258
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.04 E-value=0.0019 Score=62.24 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=46.7
Q ss_pred EEeecccCCCCCCCCccEEEeccccccccccH-HHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 303 IGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 303 ~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
+++-.....+|.++|.|+|.+..++.|+.-+. ..++++++|+|||||++-++.|....
T Consensus 33 lvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 33 LVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred hhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 33334456789999999999999977766443 46999999999999999999997654
No 259
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.98 E-value=0.042 Score=65.13 Aligned_cols=105 Identities=13% Similarity=-0.007 Sum_probs=70.1
Q ss_pred CCeEEEECCCCchHHHHHhhcC-----------------------------------------CceeEEEEecCCHHHHH
Q 006518 254 VRTILDIGCGYGSFGAHLFSKE-----------------------------------------LLTMCIANYEASGSQVQ 292 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g-----------------------------------------~~~~sV~giD~S~~ml~ 292 (642)
...++|-+||+|++....+... .....++|+|+++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 4789999999999987765420 01236899999999999
Q ss_pred HHHHc----CCC--ceEEeecccCCCCC--CCCccEEEeccccccccc---cHHHHHHHHHhc---ccCCcEEEEEeCCC
Q 006518 293 LTLER----GLP--AMIGSFASKQLPYP--SLSFDMLHCARCGVDWDQ---KDGILLLEVDRV---LKPGGYFVWTSPLT 358 (642)
Q Consensus 293 ~A~er----gl~--~~~~~~da~~Lpfp--d~SFDlV~~s~~ll~~~~---d~~~~L~Ei~Rv---LKPGG~Lvis~p~~ 358 (642)
.|+++ |+. +.+.+.|+.+++.+ .++||+|+++--.-.-.. +...+..++-.. ..+|+.+++.+...
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 88765 553 56778888887654 357999999954222121 122343443344 44898887776643
No 260
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.041 Score=61.60 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCC---CCCccEEEec
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfp---d~SFDlV~~s 324 (642)
+..+|||+=||.|.|+..|+++ ..+|+|+|+++++++.|++. ++ ++.|..+++++..-. ...||.|+..
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD 369 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD 369 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC
Confidence 3478999999999999999976 35799999999999887653 44 477888888777533 3578999865
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
-- -.--...+++.+. -++|...+++|.-+
T Consensus 370 PP---R~G~~~~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 370 PP---RAGADREVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred CC---CCCCCHHHHHHHH-hcCCCcEEEEeCCH
Confidence 22 0011123444444 45777788888653
No 261
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.96 E-value=0.053 Score=55.40 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=66.7
Q ss_pred cCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHH----HHHHHHcCCCceEEeecccCCC--C--CCCCccEEEe
Q 006518 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ----VQLTLERGLPAMIGSFASKQLP--Y--PSLSFDMLHC 323 (642)
Q Consensus 252 ~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~m----l~~A~ergl~~~~~~~da~~Lp--f--pd~SFDlV~~ 323 (642)
.++.+||-+|+.+|....++++--.....|.+++.|+.. +..|++|. ++.-...|+. .| | --+.+|+|++
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~DAr-~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILEDAR-HPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES-TT-SGGGGTTTS--EEEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeeccCC-ChHHhhcccccccEEEe
Confidence 356899999999999999998763334569999999844 56676663 3332334543 33 1 1237999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
--+ ..+..+.++......||+||.++++..
T Consensus 150 DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 150 DVA---QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp E-S---STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC---ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 733 223335588889999999999999854
No 262
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.95 E-value=0.0024 Score=56.70 Aligned_cols=96 Identities=18% Similarity=0.075 Sum_probs=39.8
Q ss_pred EEECCCCchHHHHHhhcCCce--eEEEEecCCH---HHHHHHHHcCC--CceEEeecccCC--CCCCCCccEEEeccccc
Q 006518 258 LDIGCGYGSFGAHLFSKELLT--MCIANYEASG---SQVQLTLERGL--PAMIGSFASKQL--PYPSLSFDMLHCARCGV 328 (642)
Q Consensus 258 LDIGCGtG~~a~~La~~g~~~--~sV~giD~S~---~ml~~A~ergl--~~~~~~~da~~L--pfpd~SFDlV~~s~~ll 328 (642)
||||+..|..+..+++.--.. .+++++|..+ ...+..++.+. .+.+..++.... .+++++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 689999999998888642111 3689999988 33444443333 355555554322 133578999998754
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEe
Q 006518 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
|-.+.....+..+.+.|+|||.+++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 323444568899999999999999865
No 263
>PRK05785 hypothetical protein; Provisional
Probab=95.88 E-value=0.0071 Score=61.72 Aligned_cols=88 Identities=24% Similarity=0.227 Sum_probs=61.3
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-CchhhhhccccccccccccccCCCCCCcccccccccccccccCC
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl~g~~~~~ce~~~typrtydl~h~~~~~~~~~~~ 595 (642)
.+|||++||+|-++.+|.+.. . -+|+=+|-. +-|...-+++ ...+.-.+.+|.=+.+||+|.+...+-
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~-~---~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~----- 121 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF-K---YYVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALH----- 121 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc-C---CEEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhh-----
Confidence 479999999999999997621 1 266667764 4454444442 223444566665459999999976653
Q ss_pred CCCCCchhhhhhhccccCCCc
Q 006518 596 RHRCSTLDIFTEIDRILRPEV 616 (642)
Q Consensus 596 ~~~c~~~~~~~e~dRilrP~g 616 (642)
+--+.+..+-||-|+|||.+
T Consensus 122 -~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 122 -ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -ccCCHHHHHHHHHHHhcCce
Confidence 23467889999999999954
No 264
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=95.81 E-value=0.0051 Score=61.56 Aligned_cols=126 Identities=13% Similarity=0.049 Sum_probs=71.6
Q ss_pred cchhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCcceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC
Q 006518 472 EEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT 551 (642)
Q Consensus 472 ~~f~~d~~~w~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~ 551 (642)
..|....+.=..++......+... . . ...--+|+|++||.|.++..+.+... .|+=++..
T Consensus 17 ~~~~~~~~~~~~~~~~i~~~~~~~-~-~-------------~~~~~~vLdlG~G~G~~~~~l~~~~~-----~v~~iD~s 76 (224)
T TIGR01983 17 GKFKPLHKMNPLRLDYIRDTIRKN-K-K-------------PLFGLRVLDVGCGGGLLSEPLARLGA-----NVTGIDAS 76 (224)
T ss_pred CcHHHHHHhhHHHHHHHHHHHHhc-c-c-------------CCCCCeEEEECCCCCHHHHHHHhcCC-----eEEEEeCC
Confidence 445556555555666665554321 0 0 01234799999999999988875321 13333322
Q ss_pred -Cchhhhhc----ccc--ccccc-cccccCCCCCCcccccccccccccccCCCCCCCchhhhhhhccccCCCceeeeccC
Q 006518 552 -NHLPMILD----RGF--VGVLH-DWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPI 623 (642)
Q Consensus 552 -~~l~~i~~----RGl--~g~~~-~~ce~~~typrtydl~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~ 623 (642)
..+...-+ -|+ +-..+ |..+-....|.+||+|.+.+++... -+...+|-++.++|+|||.++.+..
T Consensus 77 ~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~------~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 77 EENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV------PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC------CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 22222211 122 11111 1111111225789999998877644 3566899999999999999987643
No 265
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.81 E-value=0.0057 Score=63.17 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=52.7
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----cccccccccccccCCCCCCccccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl~g~~~~~ce~~~typrtydl~h~~~~~~~ 591 (642)
.+|+|+|||.|..+.++...... .|+-++-. ..+...-+ .|+-...+ +..-..+||+|.++-....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~----~v~giDis~~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~~ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK----KVLAVDIDPQAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILANP 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC----eEEEEECCHHHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHHH
Confidence 47999999999888877653221 13333322 22222222 23311111 1111126999988533222
Q ss_pred ccCCCCCCCchhhhhhhccccCCCceeeeccCch
Q 006518 592 ESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIST 625 (642)
Q Consensus 592 ~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~~ 625 (642)
+..++-++-|+|+|||+++.|.|..
T Consensus 192 ---------~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 192 ---------LLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred ---------HHHHHHHHHHhcCCCcEEEEEECcH
Confidence 3367789999999999999997754
No 266
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.77 E-value=0.0051 Score=61.56 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=59.5
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhh----cccc--cc-ccccccccCCC-C-CCccccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VG-VLHDWCEAFPT-Y-PRTYDLVHA 585 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl--~g-~~~~~ce~~~t-y-prtydl~h~ 585 (642)
-.+|+|++||.|.++..|.+. .|- .+|+-++-. ..+..+- ..|+ +- +..|+.+.++. + +.+||+|-+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~-~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKA-NPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHH-CCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 468999999999999988752 221 134444432 2232221 1233 11 22233244442 3 578999876
Q ss_pred cccccccc---CCCCCCCchhhhhhhccccCCCceeeecc
Q 006518 586 EGLLSLES---GHRHRCSTLDIFTEIDRILRPEVSKSNSP 622 (642)
Q Consensus 586 ~~~~~~~~---~~~~~c~~~~~~~e~dRilrP~g~~~~~~ 622 (642)
.... .|. ....+.....+|-++.|+|+|||.++.+-
T Consensus 118 ~~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 118 NFPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred ECCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 4222 121 00123346789999999999999998753
No 267
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.76 E-value=0.0048 Score=63.45 Aligned_cols=95 Identities=19% Similarity=0.146 Sum_probs=57.7
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc----ccc--cccccccccCCCCCCcccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV--GVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl~--g~~~~~ce~~~typrtydl~h~~~~~~ 590 (642)
.|||+.||+|-++..|.+.-.+- -.|+-+|-. +-|.+.-+| |.. =....=.|.+|.-..|||.|=+...+-
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~~~--~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVGPN--GKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS-----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG
T ss_pred EEEEeCCChHHHHHHHHHHCCCc--cEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH
Confidence 89999999999998887531121 245555554 555555443 332 122222466775559999998766655
Q ss_pred cccCCCCCCCchhhhhhhccccCCCceeee
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
.. .+....|-||=|+|||||.++.
T Consensus 128 n~------~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 128 NF------PDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp G-------SSHHHHHHHHHHHEEEEEEEEE
T ss_pred hh------CCHHHHHHHHHHHcCCCeEEEE
Confidence 33 5677899999999999999875
No 268
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.71 E-value=0.0075 Score=59.53 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=54.2
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhh----hhcccc--ccccc-cccccCCCCCCcccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF--VGVLH-DWCEAFPTYPRTYDLVHAEGL 588 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~----i~~RGl--~g~~~-~~ce~~~typrtydl~h~~~~ 588 (642)
.+|+|+|||+|.++..|... .+- ..|+-++.. ..+.+ +-+.|+ |-+.+ |. +.++ .+.+||+|-+..
T Consensus 44 ~~vLDiGcGtG~~s~~la~~-~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~-~~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIA-RPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA-EDFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CeEEEecCCCCccHHHHHHH-CCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch-hhcc-ccCCccEEEehh-
Confidence 58999999999887766532 121 234444543 32222 222344 22222 22 2232 357899998754
Q ss_pred cccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 589 LSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 589 ~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
+ ..+.+++-++.|+|+|||.++..
T Consensus 118 ~---------~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 L---------ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred h---------hCHHHHHHHHHHhcCCCCEEEEE
Confidence 2 24557888889999999999864
No 269
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.71 E-value=0.077 Score=56.03 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=60.6
Q ss_pred CCCeEEEECCCCchHHHHHhh-cCCceeEEEEecCCHHHHHHHHHc-------CCCceEEeecccCCCCCCCCccEEEec
Q 006518 253 GVRTILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLER-------GLPAMIGSFASKQLPYPSLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~-~g~~~~sV~giD~S~~ml~~A~er-------gl~~~~~~~da~~Lpfpd~SFDlV~~s 324 (642)
.+++|+=||||.=-+|..+.. +......|+++|.+++.++.+++- +....|..+|....+..-..||+|+.+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 346999999997766665554 323456799999999999888541 334567878877776655689999987
Q ss_pred cccccccc-cHHHHHHHHHhcccCCcEEEEEe
Q 006518 325 RCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 325 ~~ll~~~~-d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
.. ..... +-.++|..+.+.++||..+++-.
T Consensus 200 al-Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 AL-VGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hh-cccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 54 33332 34579999999999999999864
No 270
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=95.68 E-value=0.0098 Score=59.16 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=60.3
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchh----hhhcccc--ccccccccccCCCCCCccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~----~i~~RGl--~g~~~~~ce~~~typrtydl~h~~~~~ 589 (642)
..|+|+|||+|.++.++... .+- ..|+-++.. .-+. .+-+.|+ +-+++.-.+.++. +.+||+|-+..
T Consensus 47 ~~VLDiGcGtG~~al~la~~-~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIA-RPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHH-CCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 46999999999988877642 221 356666654 2222 2223444 4445544555555 67999999843
Q ss_pred ccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 590 SLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 590 ~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
-..+++++-++-|+|||||.++.-
T Consensus 121 --------~~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 121 --------VASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred --------ccCHHHHHHHHHHhcCCCeEEEEE
Confidence 134678999999999999998854
No 271
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=95.63 E-value=0.014 Score=61.02 Aligned_cols=136 Identities=13% Similarity=0.106 Sum_probs=80.5
Q ss_pred CCccchhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCcceEEEecCcCchh----hhhhhhccCC--CcEE
Q 006518 469 VHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGG----FNSALLEKGK--SVWV 542 (642)
Q Consensus 469 ~~~~~f~~d~~~w~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~rnv~Dm~~~~g~----faa~l~~~~~--~vwv 542 (642)
++...|-.|..+|..-.+..... ++... +.+.--.|+|.+||+|- .|-.|.+... .-|.
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~---l~~~~------------~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~ 132 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPL---LIASR------------RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPD 132 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHH---HHHhc------------CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCC
Confidence 34566888999999876654332 22110 01123579999999994 6666654211 1244
Q ss_pred EEeecCCCC-Cchhhhhccccc-----------------------------------cccccccccCCCCCCcccccccc
Q 006518 543 MNVVPTIGT-NHLPMILDRGFV-----------------------------------GVLHDWCEAFPTYPRTYDLVHAE 586 (642)
Q Consensus 543 mnv~p~~~~-~~l~~i~~RGl~-----------------------------------g~~~~~ce~~~typrtydl~h~~ 586 (642)
..|+-+|-. .-|.. ..+|.- =..||-.+.-+ -+..||+|.|.
T Consensus 133 ~~I~g~Dis~~~L~~-Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~cr 210 (264)
T smart00138 133 VKILATDIDLKALEK-ARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCR 210 (264)
T ss_pred eEEEEEECCHHHHHH-HHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEec
Confidence 456655544 22321 223221 01244444321 24789999998
Q ss_pred cccccccCCCCCCCchhhhhhhccccCCCceeeeccCch
Q 006518 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIST 625 (642)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~~ 625 (642)
.+|.... .=....++-++-|+|+|||+++..+--+
T Consensus 211 nvl~yf~----~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 211 NVLIYFD----EPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred hhHHhCC----HHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 8876542 1234479999999999999999876543
No 272
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=95.35 E-value=0.0051 Score=61.65 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=61.1
Q ss_pred CCcceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCCCchhhhhc--ccccc---ccccccccCCCCCCccccccccc
Q 006518 513 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD--RGFVG---VLHDWCEAFPTYPRTYDLVHAEG 587 (642)
Q Consensus 513 ~~~~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~i~~--RGl~g---~~~~~ce~~~typrtydl~h~~~ 587 (642)
..+|+++++.|||-|-|.+.|...-+.+.++-++|.- |...-+ +|+-. .-.|-.+..| +.+|||||.+.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~A----l~~Ar~Rl~~~~~V~~~~~dvp~~~P--~~~FDLIV~SE 114 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRA----LARARERLAGLPHVEWIQADVPEFWP--EGRFDLIVLSE 114 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHH----HHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHH----HHHHHHhcCCCCCeEEEECcCCCCCC--CCCeeEEEEeh
Confidence 4689999999999999999998754455555554432 221111 12111 1111122233 38999999999
Q ss_pred ccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 588 LLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 588 ~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
++--+. +.-.+..++-.|...|+|||.+|.-
T Consensus 115 VlYYL~---~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 115 VLYYLD---DAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp -GGGSS---SHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HhHcCC---CHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 887665 4445667888889999999999873
No 273
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.34 E-value=0.05 Score=54.56 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=66.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCceEEeecccCCCCCCCCccEEEeccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A----~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
.+++|||+|+|.|..+..-+..|. ..++..|+.+...+.. +.+|+.+.+...|. -.++..||+|+.+.+++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeeccc---cCCCcceeEEEeeceec
Confidence 458999999999999988888763 3467778876665543 23454555543332 23667899999998866
Q ss_pred cccccHHHHHHHHHhccc-CCcEEEEEeCCCCc
Q 006518 329 DWDQKDGILLLEVDRVLK-PGGYFVWTSPLTNP 360 (642)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLK-PGG~Lvis~p~~~~ 360 (642)
.+. ...+++. +.+.|+ .|-.+++.+|....
T Consensus 154 ~~~-~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 154 NHT-EADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred Cch-HHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 543 3345666 555554 55566666776544
No 274
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.32 E-value=0.0094 Score=58.07 Aligned_cols=97 Identities=15% Similarity=0.072 Sum_probs=57.2
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhh----cccccc--ccccccccCCCCCCccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVG--VLHDWCEAFPTYPRTYDLVHAEGLL 589 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl~g--~~~~~ce~~~typrtydl~h~~~~~ 589 (642)
.+|+|++||.|.++.++.+.. + .|+-++-. ..+..+- ..|+-. +.-|+.+.+ +.+||+|-++--|
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~-~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG-K----CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPY 92 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC-C----EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCC
Confidence 459999999999999998632 2 34444432 2222111 122211 223444432 4689999876554
Q ss_pred ccccCC---------------CCCCCchhhhhhhccccCCCceeeec
Q 006518 590 SLESGH---------------RHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 590 ~~~~~~---------------~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
-..... ..+..+..++-++.|+|+|||.++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 322100 01223668899999999999998774
No 275
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=95.32 E-value=0.0093 Score=60.28 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=61.2
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc----ccccc--cccccccCCCCCCcccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGV--LHDWCEAFPTYPRTYDLVHAEGLLS 590 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl~g~--~~~~ce~~~typrtydl~h~~~~~~ 590 (642)
.|||++||.|.++..|.+.. .+|+-++.. +.+...-++ |+-.. ..++.+-....+-+||+|.+..+|.
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~-----~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLG-----ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcC-----CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 59999999999999887632 345555543 333322222 33111 2233222112336899999988877
Q ss_pred cccCCCCCCCchhhhhhhccccCCCceeeeccC
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPEVSKSNSPI 623 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~ 623 (642)
... +...+|-++.|+|+|||.++.+-+
T Consensus 126 ~~~------~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 126 HVP------DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ccC------CHHHHHHHHHHHcCCCcEEEEEec
Confidence 543 456889999999999999987644
No 276
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.31 E-value=0.042 Score=51.80 Aligned_cols=97 Identities=18% Similarity=0.092 Sum_probs=60.2
Q ss_pred CCCeEEEECCCCchHHHHHhh-----cCCceeEEEEecCCHHHHHHHHHcCC--C------ceEEeecccCCCCCCCCcc
Q 006518 253 GVRTILDIGCGYGSFGAHLFS-----KELLTMCIANYEASGSQVQLTLERGL--P------AMIGSFASKQLPYPSLSFD 319 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~-----~g~~~~sV~giD~S~~ml~~A~ergl--~------~~~~~~da~~Lpfpd~SFD 319 (642)
...+|+|+|||.|.++..|+. . ....|+++|.++..++.+.++.- . ..+...+....+ .....+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 457999999999999999988 3 45779999999999887765421 1 112222211111 134566
Q ss_pred EEEeccccccccccH-HHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 320 MLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 320 lV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
+++.. |-..+. ..+|+...+ |+-.+++..|.-.
T Consensus 102 ~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 102 ILVGL----HACGDLSDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred EEEEe----ecccchHHHHHHHHHH---cCCCEEEEcCCcc
Confidence 66643 444444 345555555 7777776666543
No 277
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.27 E-value=0.0092 Score=60.85 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=57.4
Q ss_pred eEEEecCcCchhhhhhhhcc-CCCcEEEEeecCCCC-Cchhhhhcc----cc---cc-ccccccccCCCCCCcccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GF---VG-VLHDWCEAFPTYPRTYDLVHAE 586 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---~g-~~~~~ce~~~typrtydl~h~~ 586 (642)
..|+|+|||.|.++..|.+. ..|- .+|+-++-. +-+...-++ +. +- +..|+++ ++ . ..+|++.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~--~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEeee
Confidence 47999999999999888752 0122 234444443 333322221 21 11 1223322 22 1 358988877
Q ss_pred cccccccCCCCCCCchhhhhhhccccCCCceeeecc
Q 006518 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSP 622 (642)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~ 622 (642)
..+.... . =....+|-||-|+|+|||.++.+-
T Consensus 130 ~~l~~~~---~-~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTLQFLP---P-EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cchhhCC---H-HHHHHHHHHHHHhcCCCeEEEEee
Confidence 6665432 1 124578999999999999999873
No 278
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=95.22 E-value=0.018 Score=56.47 Aligned_cols=94 Identities=17% Similarity=0.072 Sum_probs=55.8
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhh----cccccccccccc-ccCCCCCCcccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVGVLHDWC-EAFPTYPRTYDLVHAEGLLS 590 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl~g~~~~~c-e~~~typrtydl~h~~~~~~ 590 (642)
.+|+|++||.|.++.++... .+- .+|+-++-. ..+..+- ..|+-. ..-.+ .....++..||+|.+++..
T Consensus 33 ~~vLDiG~G~G~~~~~la~~-~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQ-FPS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc-
Confidence 47999999999999888752 221 234444432 2232221 123211 10011 1122345789999875432
Q ss_pred cccCCCCCCCchhhhhhhccccCCCceeeeccC
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPEVSKSNSPI 623 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~ 623 (642)
..+..++-++-|+|+|||.++.+-+
T Consensus 108 --------~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 108 --------GNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred --------cCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 3456788899999999999998644
No 279
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.10 E-value=0.061 Score=58.61 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=38.5
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ 310 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~ 310 (642)
.+|||+=||.|.|+..|++.. .+|+|+|.++++++.|++. ++ ++.+..+++++
T Consensus 198 ~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 379999999999999999874 4699999999999888643 44 45676665544
No 280
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.09 E-value=0.0099 Score=61.22 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=56.8
Q ss_pred eEEEecCcCchhhhhhhhcc-CCCcEEEEeecCCCC-Cchhhhhcc----cc---ccccccccccCCCCCCccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEG 587 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---~g~~~~~ce~~~typrtydl~h~~~ 587 (642)
..|+|+|||.|.++.+|.+. ..|-| .|+=++.. .-+...-+| |+ +-++..-.+.++. ..+|+|-+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEehhh
Confidence 36999999999998887641 12322 34444432 333322221 22 2222211122221 3488877765
Q ss_pred ccccccCCCCCCCchhhhhhhccccCCCceeeecc
Q 006518 588 LLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSP 622 (642)
Q Consensus 588 ~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~ 622 (642)
.+.... .-....++-||-|+|+|||.++.+=
T Consensus 134 ~l~~l~----~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLE----PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCC----HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 554432 1234689999999999999998863
No 281
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=95.09 E-value=0.016 Score=62.97 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=60.1
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcccc---ccccccccccCCCCCCcccccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl---~g~~~~~ce~~~typrtydl~h~~~~~~~~ 592 (642)
..|+|++||.|.++..+.+. .+- -+|+=+|.. +.+...-++.- +-+.+.=.+.++.-+.+||+|-+.+.+..+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~-~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKH-VDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 47999999999998887652 111 244444443 34443333210 122222223344445899999887777654
Q ss_pred cCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 593 SGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 593 ~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
. +.+.+|-|+-|+|+|||.++..
T Consensus 192 ~------d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 192 P------DPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred C------CHHHHHHHHHHhcCCCcEEEEE
Confidence 4 2357899999999999998763
No 282
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.06 E-value=0.023 Score=59.03 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=55.6
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----ccccc--c-cccccccCCCCCCcccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG--V-LHDWCEAFPTYPRTYDLVHAEGL 588 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl~g--~-~~~~ce~~~typrtydl~h~~~~ 588 (642)
.+|||++||.|..+..+...-.+-. .|+=++.. ..+..+-+ .|+-. . ..|. +.++.-+.+||+|++..+
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~--~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTG--KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCV 155 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC--EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCc
Confidence 4899999999875443322101111 23334432 33333322 23211 1 1222 333433479999998877
Q ss_pred cccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 589 LSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 589 ~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
+.... +...++-|+=|+|||||.++.+
T Consensus 156 ~~~~~------d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 156 INLSP------DKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred ccCCC------CHHHHHHHHHHHcCCCcEEEEE
Confidence 65432 3467899999999999999986
No 283
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.05 E-value=0.023 Score=50.78 Aligned_cols=95 Identities=21% Similarity=0.110 Sum_probs=55.2
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhh----hccccccc--c-ccccccCCCCCCcccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGV--L-HDWCEAFPTYPRTYDLVHAEGL 588 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGl~g~--~-~~~ce~~~typrtydl~h~~~~ 588 (642)
..|+|++||.|.++..+.+. .+- .+|+-++-. ..+..+ -..|+-.+ . .|.-+..+.-+.+||.|=+.+.
T Consensus 21 ~~vldlG~G~G~~~~~l~~~-~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARL-VPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHH-CCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 48999999999999999863 221 345555543 222221 12232111 1 1211112222357888855332
Q ss_pred cccccCCCCCCCchhhhhhhccccCCCceeeeccC
Q 006518 589 LSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPI 623 (642)
Q Consensus 589 ~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~ 623 (642)
.. .+..++-++-|.|+|||+++.+-+
T Consensus 98 ~~---------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 GG---------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ch---------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 21 234789999999999999998754
No 284
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.00 E-value=0.033 Score=58.89 Aligned_cols=105 Identities=20% Similarity=0.248 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCce-EEeecccCC-C-CCCCCccEEEe--
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAM-IGSFASKQL-P-YPSLSFDMLHC-- 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e----rgl~~~-~~~~da~~L-p-fpd~SFDlV~~-- 323 (642)
++.+|||+.++.|.=+.++++.-.....+++.|.+..-+...++ -|+... ....|.... + .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 45789999999999999999875445779999999988766543 355443 333555544 1 23346999996
Q ss_pred --ccc-ccccccc----------------HHHHHHHHHhcc----cCCcEEEEEeCC
Q 006518 324 --ARC-GVDWDQK----------------DGILLLEVDRVL----KPGGYFVWTSPL 357 (642)
Q Consensus 324 --s~~-ll~~~~d----------------~~~~L~Ei~RvL----KPGG~Lvis~p~ 357 (642)
+.. .+...++ ..++|....+.+ ||||+++.++-.
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 221 1111111 124788999999 999999999863
No 285
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=94.97 E-value=0.015 Score=57.12 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=52.8
Q ss_pred eEEEecCcCchhhhhhhhccCCC---cEEEEeecCCCCCchhhhhccccccccccccccC------CCC-CCcccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKS---VWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAF------PTY-PRTYDLVHAE 586 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~---vwvmnv~p~~~~~~l~~i~~RGl~g~~~~~ce~~------~ty-prtydl~h~~ 586 (642)
.+|+|++||.|+++.++.....+ |+..=.-|. .. + .++--+..|..+.. ..+ +.+||+|=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~-----~~--~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM-----KP--I-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc-----cc--C-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 48999999999998877642112 333322221 10 0 13222233544321 012 3578888765
Q ss_pred ccc--ccccCC---CCCCCchhhhhhhccccCCCceeeec
Q 006518 587 GLL--SLESGH---RHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 587 ~~~--~~~~~~---~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
+.. +..... ...+.++.+|-++-|+|+|||.++..
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 421 110000 01123467899999999999999984
No 286
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.89 E-value=0.26 Score=49.84 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=72.9
Q ss_pred EEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCC-CccEEEecccccc
Q 006518 257 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSL-SFDMLHCARCGVD 329 (642)
Q Consensus 257 VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~-SFDlV~~s~~ll~ 329 (642)
|.||||--|.+..+|++++ ....+++.|+++.-++.|++. |+. +.+..+|... +++.+ ..|.|+.+.+.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 6899999999999999997 456789999999999888754 443 3444555322 23333 3788888765111
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCCCCchhhhhhHHhHhhhhhhhhhhhccceEEeeec
Q 006518 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (642)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~w~~l~~l~~~lcW~ll~~~ 391 (642)
-....|.+....++..-.|++.-. .....++.++...+|.++.+.
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~--------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPN--------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEES--------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCC--------------CChHHHHHHHHHCCCEEEEeE
Confidence 123567777777777677887533 223566788888889887543
No 287
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.86 E-value=0.24 Score=54.40 Aligned_cols=127 Identities=14% Similarity=0.130 Sum_probs=82.9
Q ss_pred cccchhhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCce---------------------------
Q 006518 226 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLT--------------------------- 278 (642)
Q Consensus 226 ~yd~~~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~--------------------------- 278 (642)
.+++.+..-+.++..+-...+ |. ....++|-=||+|++....+-.+...
T Consensus 168 ~~~g~ApLketLAaAil~lag--w~--~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~e 243 (381)
T COG0116 168 VYDGPAPLKETLAAAILLLAG--WK--PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREE 243 (381)
T ss_pred ccCCCCCchHHHHHHHHHHcC--CC--CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHH
Confidence 344445555555554433332 11 22689999999999988877654210
Q ss_pred ----e-------EEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc-cccccc--HH---
Q 006518 279 ----M-------CIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG-VDWDQK--DG--- 335 (642)
Q Consensus 279 ----~-------sV~giD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~SFDlV~~s~~l-l~~~~d--~~--- 335 (642)
. .++|.|+++.+++.|+.+ |+. +.|.++|+..++-+-+.+|+|+|+--. ...... .+
T Consensus 244 a~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY 323 (381)
T COG0116 244 AEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLY 323 (381)
T ss_pred HHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHH
Confidence 1 377999999999988754 553 668889999887554789999998431 111111 22
Q ss_pred -HHHHHHHhcccCCcEEEEEeC
Q 006518 336 -ILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 336 -~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.+...+++.++--+.++|+..
T Consensus 324 ~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 324 REFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHhcCCceEEEEcc
Confidence 345566677788888888866
No 288
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.84 E-value=0.14 Score=54.65 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=84.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHH---HHHH----HcC--------------------C-Cce--
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV---QLTL----ERG--------------------L-PAM-- 302 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml---~~A~----erg--------------------l-~~~-- 302 (642)
..-+||--|||.|.++..|+..|+. +-|.+.|--|+ .++. ..+ + ++.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~---~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK---CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc---ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 4468999999999999999988754 66778887776 2332 111 0 000
Q ss_pred -------------E--EeecccCC---CCCCCCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCchhhh
Q 006518 303 -------------I--GSFASKQL---PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 364 (642)
Q Consensus 303 -------------~--~~~da~~L---pfpd~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~l 364 (642)
+ ..+|..+. +-..++||+|+..+. +.-..+.-..+..|..+|||||+++=..|...+...-
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF-IDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF-IDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE-eechHHHHHHHHHHHHhccCCcEEEeccceeeeccCC
Confidence 0 00111000 011236999998753 5555566679999999999999999877765432110
Q ss_pred hh---H-HhHhhhhhhhhhhhccceEEeeec
Q 006518 365 RN---K-ENQKRWNFVRDFVENLCWELVSQQ 391 (642)
Q Consensus 365 r~---~-e~~~~w~~l~~l~~~lcW~ll~~~ 391 (642)
.. + --.-..+.+..+++..+|+.+.+.
T Consensus 306 ~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 306 HGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 11 0 012345777888889999988665
No 289
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.72 E-value=0.019 Score=57.59 Aligned_cols=89 Identities=13% Similarity=-0.006 Sum_probs=50.4
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchh----hhhccccc---ccc-ccccccCCCCCCccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGFV---GVL-HDWCEAFPTYPRTYDLVHAEG 587 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~----~i~~RGl~---g~~-~~~ce~~~typrtydl~h~~~ 587 (642)
..|+|+|||+|.+++.|.+.-.+- =.|+-++-. +.+. -+...|+- -++ .|-.+.++. ..+||.|.++.
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~--g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~ 150 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERR--GKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTA 150 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEcc
Confidence 369999999999998876420000 023333322 2221 12233542 222 244444443 36899999865
Q ss_pred ccccccCCCCCCCchhhhhhhccccCCCceeee
Q 006518 588 LLSLESGHRHRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 588 ~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
.+... .=|+-|+|+|||.++.
T Consensus 151 ~~~~~------------~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 151 AASTI------------PSALVRQLKDGGVLVI 171 (205)
T ss_pred Ccchh------------hHHHHHhcCcCcEEEE
Confidence 54322 2366789999999876
No 290
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.72 E-value=0.045 Score=50.80 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=34.7
Q ss_pred eEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 006518 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (642)
Q Consensus 256 ~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er 297 (642)
++||||||.|.++..+++.+ ...+++++|+++.+.+.+++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHH
Confidence 48999999999999998875 335799999999999877654
No 291
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.68 E-value=0.04 Score=53.84 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=45.3
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC--CCCCC-ccEEEec
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLS-FDMLHCA 324 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lp--fpd~S-FDlV~~s 324 (642)
.+|+|+.||.|..+..+++.. ..|+++|.++..++.|+.. |+ ++.+..+|...+. +.... ||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 369999999999999999884 4589999999999888754 44 4667777765542 22222 8999986
No 292
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.63 E-value=0.023 Score=57.21 Aligned_cols=89 Identities=15% Similarity=0.054 Sum_probs=50.6
Q ss_pred eEEEecCcCchhhhhhhhccCCC-cEEEEeecCCCC-Cchhh----hhcccc---ccccccccccCCCCCCccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPM----ILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEG 587 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~-vwvmnv~p~~~~-~~l~~----i~~RGl---~g~~~~~ce~~~typrtydl~h~~~ 587 (642)
..|||++||+|.+++.|.+.-.+ . .|+-++-. .-+.. +-+.|+ .-+..|..+.++. ...||+|++++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g---~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~ 154 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDG---LVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTA 154 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcC
Confidence 37999999999999998763222 1 13333322 22221 122343 1122344443333 25799998754
Q ss_pred ccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 588 LLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 588 ~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
... .+.-++-+.|+|||.++..
T Consensus 155 ~~~------------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 155 AGP------------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred Ccc------------cccHHHHHhcCcCcEEEEE
Confidence 322 3334566789999998864
No 293
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.62 E-value=0.16 Score=53.31 Aligned_cols=106 Identities=10% Similarity=0.132 Sum_probs=59.5
Q ss_pred CCCeEEEECCC--CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCC--ceEEeecccCCC--CC----CCCcc
Q 006518 253 GVRTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLP--AMIGSFASKQLP--YP----SLSFD 319 (642)
Q Consensus 253 ~~~~VLDIGCG--tG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er---gl~--~~~~~~da~~Lp--fp----d~SFD 319 (642)
+.+..|||||| |...+...+++-.+...|+-+|+.+-.+..++.. ... ..++.+|..+.. +. .+-+|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 57899999999 4456777777655678899999999888755432 233 557777765431 00 11222
Q ss_pred -----EEEeccccccccc---cHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 320 -----MLHCARCGVDWDQ---KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 320 -----lV~~s~~ll~~~~---d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
.|....+ +||.+ ++..++..+...|.||.+|+++-....
T Consensus 148 ~~rPVavll~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCeeeeeeee-eccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 3334444 66664 456799999999999999999977543
No 294
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=0.28 Score=51.64 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=77.3
Q ss_pred HHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeeccc
Q 006518 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK 309 (642)
Q Consensus 236 ~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl--~~~~~~~da~ 309 (642)
.+..++...++ .+|||-|.|.|+++.++++.-.++.++...|.++.-.+.|++. ++ ++.+..-|+.
T Consensus 96 ~I~~~L~i~PG--------svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc 167 (314)
T KOG2915|consen 96 MILSMLEIRPG--------SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVC 167 (314)
T ss_pred HHHHHhcCCCC--------CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecc
Confidence 45566666655 8999999999999999998866778899999998877777643 43 4555555655
Q ss_pred CCCC--CCCCccEEEeccccccccccHHHHHHHHHhcccCCc-EEEEEeCC
Q 006518 310 QLPY--PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG-YFVWTSPL 357 (642)
Q Consensus 310 ~Lpf--pd~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG-~Lvis~p~ 357 (642)
..-| .+..+|.|+.-. +.|-.++--+..+||.+| +|+--.|+
T Consensus 168 ~~GF~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 168 GSGFLIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred cCCccccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEeccHH
Confidence 5544 357899997542 445567777778999876 66554554
No 295
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.55 E-value=0.14 Score=56.51 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=33.4
Q ss_pred CCCCCccEEEeccccccccccHH--------------------------------------HHHHHHHhcccCCcEEEEE
Q 006518 313 YPSLSFDMLHCARCGVDWDQKDG--------------------------------------ILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 313 fpd~SFDlV~~s~~ll~~~~d~~--------------------------------------~~L~Ei~RvLKPGG~Lvis 354 (642)
||+++.+++|++.+ +||..... .+|+-=.+-|.|||.++++
T Consensus 158 fP~~Slh~~~Ss~s-lHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 158 FPARSIDVFHSAFS-LHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred cCCCceEEEEeecc-ceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 89999999999998 88864211 1223334558899999999
Q ss_pred eCCCC
Q 006518 355 SPLTN 359 (642)
Q Consensus 355 ~p~~~ 359 (642)
..+..
T Consensus 237 ~~Gr~ 241 (386)
T PLN02668 237 CLGRT 241 (386)
T ss_pred EecCC
Confidence 87653
No 296
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=94.42 E-value=0.45 Score=52.55 Aligned_cols=91 Identities=11% Similarity=0.106 Sum_probs=53.6
Q ss_pred eEEEECCCCchHHHHHhhcCCceeEEEEecCCHHH---HHHHHHcCCCce-EEeecccCCCCCCCCccEEEecccccccc
Q 006518 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ---VQLTLERGLPAM-IGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 256 ~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~m---l~~A~ergl~~~-~~~~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
+||=|+=..|.++..|+..+.. .+ .|.--.. .+.+...+++.. +...+ ..-+++. .+|+|+.- +.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~-~~~~~~~-~~d~vl~~-----~P 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SI--GDSYISELATRENLRLNGIDESSVKFLD-STADYPQ-QPGVVLIK-----VP 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--ee--ehHHHHHHHHHHHHHHcCCCcccceeec-ccccccC-CCCEEEEE-----eC
Confidence 7999999999999999966532 22 2332111 122334455433 22222 1223444 59998753 32
Q ss_pred cc---HHHHHHHHHhcccCCcEEEEEeCC
Q 006518 332 QK---DGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 332 ~d---~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
.. .+..|..+.++|.||+.++...-.
T Consensus 116 K~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 116 KTLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 22 245788899999999998766543
No 297
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=94.41 E-value=0.043 Score=54.90 Aligned_cols=96 Identities=22% Similarity=0.170 Sum_probs=56.4
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc----cc---cccc-ccccccCCCCCCccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFPTYPRTYDLVHAEG 587 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---~g~~-~~~ce~~~typrtydl~h~~~ 587 (642)
..|+|++||.|.++..+.+. .+- .-+|+-++.. +.+..+-++ ++ +-++ .|.. .++.=+.+||+|.++.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~-~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKA-VGK-TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHH-cCC-CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEec
Confidence 46999999999998888652 110 0123333332 222222111 11 1111 1222 1222246899999876
Q ss_pred ccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 588 LLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 588 ~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
++. +......+|-++-++|+|||.++..
T Consensus 130 ~l~------~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 130 GLR------NVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred ccc------cCCCHHHHHHHHHHhccCCcEEEEE
Confidence 654 3356778999999999999998763
No 298
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=94.28 E-value=0.022 Score=47.52 Aligned_cols=95 Identities=21% Similarity=0.162 Sum_probs=56.4
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhh---cccc---cccc-ccccccCCCCCCccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DRGF---VGVL-HDWCEAFPTYPRTYDLVHAEGLL 589 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~---~RGl---~g~~-~~~ce~~~typrtydl~h~~~~~ 589 (642)
+|+|++||.|+++..+.+ .+ ..+++-++.. +.+...- +.+. +-++ .|+.+....-+.+||++.+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~--~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 489999999999998875 11 1233333332 2211111 1111 1111 23332222235789999998887
Q ss_pred ccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 590 SLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 590 ~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
... .=....++-.+.+.|||+|.++.+
T Consensus 77 ~~~-----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL-----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh-----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 642 124457888889999999999876
No 299
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.23 E-value=0.19 Score=50.53 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=60.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHH----------HHHHHHHcCC-CceEEeecccCCCCCCCCccEE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----------QVQLTLERGL-PAMIGSFASKQLPYPSLSFDML 321 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~----------ml~~A~ergl-~~~~~~~da~~Lpfpd~SFDlV 321 (642)
+..+|+|+=.|.|.|++-++..-.....|+++-..+. +-..+++... +........-.++ +.+..|++
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~ 126 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLV 126 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCccccc
Confidence 4589999999999999999876323334554433222 1122222211 1111111222233 33345555
Q ss_pred Eecccc-------ccccccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 322 HCARCG-------VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 322 ~~s~~l-------l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
+..... +| .....++..++++.|||||.+++.++....
T Consensus 127 ~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 127 PTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred ccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 543221 22 233467999999999999999999876543
No 300
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.23 E-value=0.22 Score=54.25 Aligned_cols=104 Identities=15% Similarity=0.057 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--------CCceEEeecccCC-CCCCCCcc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--------LPAMIGSFASKQL-PYPSLSFD 319 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----g--------l~~~~~~~da~~L-pfpd~SFD 319 (642)
..++||-+|.|.|..++.+.+.. ...+|+-+|.++.|++.+++. . ..+.++..|+-++ .-..+.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 45799999999999999998763 467899999999999988732 1 1233444443332 22345899
Q ss_pred EEEeccccccccccH-----HHHHHHHHhcccCCcEEEEEeCCC
Q 006518 320 MLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 320 lV~~s~~ll~~~~d~-----~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
.|+.-.- -.-.+.. ..+..-+.|.|+++|.+++..-.+
T Consensus 368 ~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 368 VVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred EEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 9987532 1111111 246778889999999999976543
No 301
>PRK14968 putative methyltransferase; Provisional
Probab=94.22 E-value=0.032 Score=53.89 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=60.8
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhh---------hccccccccccccccCCCCCCcccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---------LDRGFVGVLHDWCEAFPTYPRTYDLVHAE 586 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i---------~~RGl~g~~~~~ce~~~typrtydl~h~~ 586 (642)
..|+|++||.|.++.+|.+.. -+|+-++-. +.+... -+||+.-+-+|+.+.++. .+||+|=++
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~-----~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n 97 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG-----KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFN 97 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc-----ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEEC
Confidence 479999999999999998632 245544443 333322 123354556777776654 479998554
Q ss_pred ccccccc---------------CCCCCCCchhhhhhhccccCCCceeeec
Q 006518 587 GLLSLES---------------GHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 587 ~~~~~~~---------------~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
.-|.... .......+..++-++.|+|+|||.++..
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4332100 0001223457899999999999987653
No 302
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.15 E-value=0.038 Score=58.55 Aligned_cols=100 Identities=12% Similarity=0.122 Sum_probs=61.1
Q ss_pred CcceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCCCchhh----hhccccccccccccccC--CCCCCccccccccc
Q 006518 514 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAF--PTYPRTYDLVHAEG 587 (642)
Q Consensus 514 ~~~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~----i~~RGl~g~~~~~ce~~--~typrtydl~h~~~ 587 (642)
...+.|+|++||.|.++.++.+. .|-. +|+-.+-+..+.. +-+.|+-.-++-.+..| ..+| .+|++-..+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~-~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH-FPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH-CCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEh
Confidence 34679999999999999999863 3432 3444454433433 23346533222222222 1234 379876666
Q ss_pred ccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 588 LLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 588 ~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
++-.+. .-....+|-++-|.|+|||.++..
T Consensus 224 ~lh~~~----~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 224 ILYSAN----EQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred hhhcCC----hHHHHHHHHHHHHhcCCCCEEEEE
Confidence 655443 112356888999999999999765
No 303
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=93.95 E-value=0.042 Score=54.28 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=54.0
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-CchhhhhccccccccccccccCCCC-CCcccccccccccccccCC
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTY-PRTYDLVHAEGLLSLESGH 595 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl~g~~~~~ce~~~ty-prtydl~h~~~~~~~~~~~ 595 (642)
+|+|++||.|.++.+|.+. ..+ +++-++.. ..+....++|+--+..|..+.++.+ +.+||+|-+.+.|....
T Consensus 16 ~iLDiGcG~G~~~~~l~~~-~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDE-KQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR-- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhc-cCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc--
Confidence 7999999999999999752 221 22323332 3344444566533334444434334 47999999988876543
Q ss_pred CCCCCchhhhhhhccccCC
Q 006518 596 RHRCSTLDIFTEIDRILRP 614 (642)
Q Consensus 596 ~~~c~~~~~~~e~dRilrP 614 (642)
+...+|-||-|++++
T Consensus 90 ----d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 ----NPEEILDEMLRVGRH 104 (194)
T ss_pred ----CHHHHHHHHHHhCCe
Confidence 355677787777665
No 304
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.87 E-value=0.31 Score=53.95 Aligned_cols=110 Identities=21% Similarity=0.327 Sum_probs=74.5
Q ss_pred ccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCce-EEeecccCCC---CCCCCccE
Q 006518 249 FILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAM-IGSFASKQLP---YPSLSFDM 320 (642)
Q Consensus 249 l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A----~ergl~~~-~~~~da~~Lp---fpd~SFDl 320 (642)
+.++++.+|||+.+.+|.=|.++|..--.+..|++.|.+..-+... .+.|+... +...|...+| |+. +||-
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence 4466788999999999987777776422345689999887776543 34466544 4556666555 555 8999
Q ss_pred EE----ecccccccc-------c----------cHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 321 LH----CARCGVDWD-------Q----------KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 321 V~----~s~~ll~~~-------~----------d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
|. |+...+... . -..++|.....++|+||+|+.++-...
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 98 444111111 0 123578888899999999999986543
No 305
>PRK06922 hypothetical protein; Provisional
Probab=93.86 E-value=0.028 Score=65.44 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=60.5
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc----cc-ccccccccccCCC-C-CCcccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVLHDWCEAFPT-Y-PRTYDLVHAEGL 588 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-~g~~~~~ce~~~t-y-prtydl~h~~~~ 588 (642)
.+|+|+|||.|.++.+|.+. .|- .+|+-+|-. ..+...-++ |. +-+++.=+..++. + |.+||+|.++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~-~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEE-TED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 47999999999998888642 221 345555544 333333222 21 1111111233442 2 489999998766
Q ss_pred ccccc----CCCC---CCCchhhhhhhccccCCCceeeec
Q 006518 589 LSLES----GHRH---RCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 589 ~~~~~----~~~~---~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
+..+- ..+. .-.+..+|-|+-|+|+|||.++..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 54321 0011 124568899999999999999986
No 306
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=93.74 E-value=0.03 Score=52.87 Aligned_cols=98 Identities=16% Similarity=0.258 Sum_probs=61.4
Q ss_pred eEEEecCcCchhhhhhhhc-cCCCcEEEEeecCCCC-Cchhhhhc----cccc--ccc-ccccccCCC-CCCcccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLE-KGKSVWVMNVVPTIGT-NHLPMILD----RGFV--GVL-HDWCEAFPT-YPRTYDLVHAE 586 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~-~~~~vwvmnv~p~~~~-~~l~~i~~----RGl~--g~~-~~~ce~~~t-yprtydl~h~~ 586 (642)
-+|+|+|||+|.+.-.|.+ ..... +|+=+|-. .-+..+-. .|+- =.+ .|+-+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4799999999999998883 11112 23333332 33332222 3442 111 23333 332 45889999999
Q ss_pred cccccccCCCCCCCchhhhhhhccccCCCceeeeccCc
Q 006518 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIS 624 (642)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~ 624 (642)
++|. +-.....++-+|=|.|+|+|.++.+...
T Consensus 81 ~~l~------~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLH------HFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGG------GTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchh------hccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 8883 2355668899999999999999987665
No 307
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=93.68 E-value=0.095 Score=52.89 Aligned_cols=93 Identities=13% Similarity=0.061 Sum_probs=51.2
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC--Cchhhhhccccccccccccc---------cCCCCCCccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT--NHLPMILDRGFVGVLHDWCE---------AFPTYPRTYDLVHA 585 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~--~~l~~i~~RGl~g~~~~~ce---------~~~typrtydl~h~ 585 (642)
.+|||+|||+|+|+..+.+...+-- .|+-++-. +.+ .|+.-+-.|..+ ++. +.+||+|-+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~--~V~aVDi~~~~~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~S 123 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKG--RVIACDILPMDPI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVMS 123 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCc--eEEEEecccccCC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEec
Confidence 3799999999999877765211100 12222221 111 122222223322 132 367899887
Q ss_pred ccccccccCCCCC--------CCchhhhhhhccccCCCceeeec
Q 006518 586 EGLLSLESGHRHR--------CSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 586 ~~~~~~~~~~~~~--------c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
+....... .. ...+.+|-|+=|+|+|||.++..
T Consensus 124 ~~~~~~~g---~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 124 DMAPNMSG---TPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCccCC---ChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 54221111 11 11246889999999999999984
No 308
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=93.68 E-value=0.02 Score=58.40 Aligned_cols=98 Identities=16% Similarity=0.100 Sum_probs=65.5
Q ss_pred CCCcceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCCCchhhhhcc-ccccccccccccCCCCCCcccccccccccc
Q 006518 512 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (642)
Q Consensus 512 ~~~~~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~i~~R-Gl~g~~~~~ce~~~typrtydl~h~~~~~~ 590 (642)
++..++.|+|+|+|.|.|+++++.. .|-. .++-.+-|..+..+.+. .+--+=||. |.++|. ||++...+++.
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~-~P~l--~~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vLh 169 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARA-YPNL--RATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVLH 169 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHH-STTS--EEEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSGG
T ss_pred cccCccEEEeccCcchHHHHHHHHH-CCCC--cceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehhhh
Confidence 4667899999999999999999974 5544 24445555444444331 122222333 466667 99999999998
Q ss_pred cccCCCCCCCchhhhhhhccccCCC--ceeee
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPE--VSKSN 620 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~--g~~~~ 620 (642)
.|.. -....||--+=+.|+|| |.++.
T Consensus 170 ~~~d----~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 170 DWSD----EDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp GS-H----HHHHHHHHHHHHHSEECTTEEEEE
T ss_pred hcch----HHHHHHHHHHHHHhCCCCCCeEEE
Confidence 8863 33457888889999999 88764
No 309
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=93.51 E-value=0.022 Score=57.07 Aligned_cols=92 Identities=15% Similarity=0.227 Sum_probs=61.9
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC----Cchh-hhhccccccccccccccCC--CCCCcccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLP-MILDRGFVGVLHDWCEAFP--TYPRTYDLVHAEGLLS 590 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~----~~l~-~i~~RGl~g~~~~~ce~~~--typrtydl~h~~~~~~ 590 (642)
.+||++||-|--|-.|.+.+. +|.-+|.. ..+. ++-++||- ++.++.-+. .+|..||+|.+..+|-
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~-----~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGF-----DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT------EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred cEEEcCCCCcHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEec
Confidence 799999999999999998653 45555543 2233 44457774 333333322 2468899999887776
Q ss_pred cccCCCCCCCchhhhhhhccccCCCceeee
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
.. ++-.+..|+-.|-.-++|||+++.
T Consensus 106 fL----~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 106 FL----QRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp GS-----GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred cC----CHHHHHHHHHHHHhhcCCcEEEEE
Confidence 55 445678899999999999999776
No 310
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.49 E-value=0.044 Score=54.82 Aligned_cols=99 Identities=21% Similarity=0.245 Sum_probs=73.3
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCCCchhhhhccccccccccccccCCCCC-CcccccccccccccccCC
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYP-RTYDLVHAEGLLSLESGH 595 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~i~~RGl~g~~~~~ce~~~typ-rtydl~h~~~~~~~~~~~ 595 (642)
-.|||.|||.|.+-+.|.+. +.|=+.-|= ..+..+.-..+||+-=+-+|.-+-++.|| .+||.|=.+.-+....
T Consensus 15 srVLDLGCGdG~LL~~L~~~-k~v~g~GvE--id~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~-- 89 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE-KQVDGYGVE--IDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR-- 89 (193)
T ss_pred CEEEecCCCchHHHHHHHHh-cCCeEEEEe--cCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh--
Confidence 46999999999999999984 455444332 12355777889999988899999999998 9999998877776654
Q ss_pred CCCCCchhhhhhhccccCCCceeeeccCchhh
Q 006518 596 RHRCSTLDIFTEIDRILRPEVSKSNSPISTCH 627 (642)
Q Consensus 596 ~~~c~~~~~~~e~dRilrP~g~~~~~~~~~~~ 627 (642)
..+.||-||=|| |..++.|--...|
T Consensus 90 ----~P~~vL~EmlRV---gr~~IVsFPNFg~ 114 (193)
T PF07021_consen 90 ----RPDEVLEEMLRV---GRRAIVSFPNFGH 114 (193)
T ss_pred ----HHHHHHHHHHHh---cCeEEEEecChHH
Confidence 256889999555 5555555443333
No 311
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.47 E-value=0.04 Score=54.70 Aligned_cols=127 Identities=15% Similarity=0.106 Sum_probs=69.5
Q ss_pred ccCCccchhh--hhhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCcceEEEecCcCchhhhhhhhccCCCcEEEE
Q 006518 467 YGVHPEEFAE--DTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMN 544 (642)
Q Consensus 467 ~~~~~~~f~~--d~~~w~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~rnv~Dm~~~~g~faa~l~~~~~~vwvmn 544 (642)
+|+..+.|.. +...||+.|..- .+..+ .+..+ -.|+||+||.|.|+.++...-.+ --.
T Consensus 8 ~~~~d~~~~~~~~~~~t~~~~r~~--~l~~l--------------~~~~~--~~vlDlG~GtG~~s~~~a~~~~~--~~~ 67 (198)
T PRK00377 8 PGIPDEEFERDEEIPMTKEEIRAL--ALSKL--------------RLRKG--DMILDIGCGTGSVTVEASLLVGE--TGK 67 (198)
T ss_pred CCCChHHHccCCCCCCCHHHHHHH--HHHHc--------------CCCCc--CEEEEeCCcCCHHHHHHHHHhCC--CCE
Confidence 4666677776 445888877532 12211 01111 37999999999998765431000 013
Q ss_pred eecCCCC-Cchhhhh----cccccc----ccccccccCCCCCCcccccccccccccccCCCCCCCchhhhhhhccccCCC
Q 006518 545 VVPTIGT-NHLPMIL----DRGFVG----VLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPE 615 (642)
Q Consensus 545 v~p~~~~-~~l~~i~----~RGl~g----~~~~~ce~~~typrtydl~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~ 615 (642)
|+-++.. .-+..+- .-|+.. +-.|..+.++.++-.||.|...+ ....+..++-++-|+|+||
T Consensus 68 v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---------~~~~~~~~l~~~~~~Lkpg 138 (198)
T PRK00377 68 VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG---------GSEKLKEIISASWEIIKKG 138 (198)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC---------CcccHHHHHHHHHHHcCCC
Confidence 4444442 2232221 113211 11233333334445688877632 1234668899999999999
Q ss_pred ceeeecc
Q 006518 616 VSKSNSP 622 (642)
Q Consensus 616 g~~~~~~ 622 (642)
|.++...
T Consensus 139 G~lv~~~ 145 (198)
T PRK00377 139 GRIVIDA 145 (198)
T ss_pred cEEEEEe
Confidence 9998643
No 312
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=93.31 E-value=0.043 Score=54.99 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=61.2
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc----ccccccccccccCCCCCCcccccccccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl~g~~~~~ce~~~typrtydl~h~~~~~~ 590 (642)
-.+|||+|||.|.|+.+|.+... .|+-++.. +-+..+-++ |+-...+-....++.-+.+||+|.+..+|.
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~-----~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA-----KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 35899999999999999986321 24444433 333333222 221111111222444457899999988876
Q ss_pred cccCCCCCCCchhhhhhhccccCCCceeeeccCc
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIS 624 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~ 624 (642)
.+. .-.+..++-++-|++++++.+...|..
T Consensus 139 ~~~----~~~~~~~l~~l~~~~~~~~~i~~~~~~ 168 (230)
T PRK07580 139 HYP----QEDAARMLAHLASLTRGSLIFTFAPYT 168 (230)
T ss_pred cCC----HHHHHHHHHHHHhhcCCeEEEEECCcc
Confidence 543 234667888888888777777766643
No 313
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=93.24 E-value=0.069 Score=56.54 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=73.6
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCCCchh----hhhccccc----cccccccccCCCCCCccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP----MILDRGFV----GVLHDWCEAFPTYPRTYDLVHAEGLL 589 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~----~i~~RGl~----g~~~~~ce~~~typrtydl~h~~~~~ 589 (642)
.|||+|||-|+++-.+++ ...|=|.-|.-.. +++. -|-++||- =..+||-+.=.+ ||=|=+-|.|
T Consensus 75 ~lLDiGCGWG~l~~~aA~-~y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~----fDrIvSvgmf 147 (283)
T COG2230 75 TLLDIGCGWGGLAIYAAE-EYGVTVVGVTLSE--EQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP----FDRIVSVGMF 147 (283)
T ss_pred EEEEeCCChhHHHHHHHH-HcCCEEEEeeCCH--HHHHHHHHHHHHcCCCcccEEEeccccccccc----cceeeehhhH
Confidence 799999999999988886 3455444443332 5544 47779996 446777554433 8888899999
Q ss_pred ccccCCCCCCCchhhhhhhccccCCCceeeeccCchhh
Q 006518 590 SLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPISTCH 627 (642)
Q Consensus 590 ~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~~~~ 627 (642)
.+.. .-+..+.+-=+.++|+|||-+++--|...+
T Consensus 148 Ehvg----~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 148 EHVG----KENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHhC----cccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 8874 356779999999999999999987776654
No 314
>PRK06202 hypothetical protein; Provisional
Probab=93.20 E-value=0.056 Score=54.86 Aligned_cols=100 Identities=11% Similarity=0.119 Sum_probs=62.0
Q ss_pred ceEEEecCcCchhhhhhhhccC-CCcEEEEeecCCCC-Cchhhhhcccc---ccccccccccCCCCCCcccccccccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~-~~l~~i~~RGl---~g~~~~~ce~~~typrtydl~h~~~~~~ 590 (642)
-..|+|++||+|.++..|.+.- +.-...+|+-+|-. +-+....++.- +-+..-=++.++.-+.+||+|-++.+|.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 4689999999999988876310 00112367777764 55555444321 1111111344555468999999998887
Q ss_pred cccCCCCCCCchhhhhhhccccCCCceeee
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
+.. +. .+..+|-||-|++| ++.++.
T Consensus 141 h~~---d~-~~~~~l~~~~r~~~-~~~~i~ 165 (232)
T PRK06202 141 HLD---DA-EVVRLLADSAALAR-RLVLHN 165 (232)
T ss_pred cCC---hH-HHHHHHHHHHHhcC-eeEEEe
Confidence 654 21 24578999999999 455554
No 315
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=93.20 E-value=0.041 Score=55.30 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=62.7
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhccc----cccccccccccCCCCCCcccccccccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----l~g~~~~~ce~~~typrtydl~h~~~~~~ 590 (642)
-..|+|++||.|.|+..|.+.. ..|+=++.. +.+..+.+|- +..-..=.+..+...|.+||+|=+..++.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~-----~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRG-----AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence 4589999999999999998632 134444543 4454444432 10000111122223347899998776665
Q ss_pred cccCCCCCCCchhhhhhhccccCCCceeeeccCc
Q 006518 591 LESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIS 624 (642)
Q Consensus 591 ~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~ 624 (642)
.+. .-.+..++-++.|+++|++++..+|-+
T Consensus 131 ~~~----~~~~~~~l~~i~~~~~~~~~i~~~~~~ 160 (219)
T TIGR02021 131 HYP----ASDMAKALGHLASLTKERVIFTFAPKT 160 (219)
T ss_pred hCC----HHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 442 234668899999999999999888754
No 316
>PRK04266 fibrillarin; Provisional
Probab=93.09 E-value=0.07 Score=54.67 Aligned_cols=93 Identities=12% Similarity=0.008 Sum_probs=48.9
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchh----hhhcc-ccccccccccccC--CCCCCccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDR-GFVGVLHDWCEAF--PTYPRTYDLVHAEGLL 589 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~----~i~~R-Gl~g~~~~~ce~~--~typrtydl~h~~~~~ 589 (642)
.|||.+||.|++...|.+. .+- =.|+-++-. .-|. .+-+| .+..+..|-.++. ...+.++|.|-.+
T Consensus 75 ~VlD~G~G~G~~~~~la~~-v~~--g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d--- 148 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDI-VEE--GVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD--- 148 (226)
T ss_pred EEEEEccCCCHHHHHHHHh-cCC--CeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC---
Confidence 6999999999999999762 110 023333322 1111 11222 2333444544321 1123457775321
Q ss_pred ccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 590 SLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 590 ~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
.. ..=....+|-|+-|+|+|||.++.+
T Consensus 149 --~~---~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 149 --VA---QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred --CC---ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 00 0001123466999999999999983
No 317
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=92.92 E-value=0.073 Score=57.85 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=57.0
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhh----hhccccccccccccccCCCCCCcccccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~----i~~RGl~g~~~~~ce~~~typrtydl~h~~~~~~~~ 592 (642)
.|+|++||.|.+++++.+. .|-. .|+-+|.. .-+.. +-+.|+-+.++ +...++..+.+||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~-~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARH-SPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHh-CCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 5999999999999999863 2311 13333322 11111 11123322222 233344446889999987666321
Q ss_pred cCCCCCCCchhhhhhhccccCCCceeee
Q 006518 593 SGHRHRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 593 ~~~~~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
.. ...-..+.++-++-|.|+|||.++.
T Consensus 275 ~~-~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 275 IQ-TSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cc-ccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 10 0112346889999999999999865
No 318
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=92.81 E-value=0.29 Score=48.92 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=66.5
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCceEEeecccCCCCCCCCccEEEecccccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----g-l~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~ 329 (642)
.++.|+|+|+|.++...++. .-.|.+++-++.....|.++ | .+..++.+|+....| +..|+|+|...--.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHH
Confidence 67999999999987776655 34588999999887777765 2 356678888888888 45899999743111
Q ss_pred cc-ccHHHHHHHHHhcccCCcEEEE
Q 006518 330 WD-QKDGILLLEVDRVLKPGGYFVW 353 (642)
Q Consensus 330 ~~-~d~~~~L~Ei~RvLKPGG~Lvi 353 (642)
.. ......+..+...||-++.++=
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCcccc
Confidence 12 2223467777778888887763
No 319
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=92.77 E-value=0.095 Score=58.74 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=56.8
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----cccc---cccccccccCCCCCCcccccccc--
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPTYPRTYDLVHAE-- 586 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl~---g~~~~~ce~~~typrtydl~h~~-- 586 (642)
.+|+||+||.|+++.++.+.-.+- ..|+-++-. +.+..+-+ .|+- -+-.|..+....++.+||+|=++
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 479999999999998887521010 123333432 33333322 2431 12234443333456889998554
Q ss_pred ----cccccccC---CCCCCCc-------hhhhhhhccccCCCceeeeccC
Q 006518 587 ----GLLSLESG---HRHRCST-------LDIFTEIDRILRPEVSKSNSPI 623 (642)
Q Consensus 587 ----~~~~~~~~---~~~~c~~-------~~~~~e~dRilrP~g~~~~~~~ 623 (642)
|++..... ....-.+ ..+|-+.=|+|+|||.+++|..
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 23221000 0000111 2578888999999999997543
No 320
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=92.72 E-value=0.12 Score=53.79 Aligned_cols=94 Identities=19% Similarity=0.150 Sum_probs=62.2
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEE------EEeecCCC-CCchhhhhcccc-cccccc----cc----ccCCCCCCcc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWV------MNVVPTIG-TNHLPMILDRGF-VGVLHD----WC----EAFPTYPRTY 580 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwv------mnv~p~~~-~~~l~~i~~RGl-~g~~~~----~c----e~~~typrty 580 (642)
=+|+||.+|+|-.|=.+++. |=. -+|+-.|- |+.|.+.-.|-. -|.+-+ |- |.+|+=..+|
T Consensus 102 m~~lDvaGGTGDiaFril~~---v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRH---VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CeEEEecCCcchhHHHHHHh---hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 78999999999999888751 222 34444444 477877666542 122222 43 4566333999
Q ss_pred cccccccccccccCCCCCCCchhhhhhhccccCCCceee
Q 006518 581 DLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKS 619 (642)
Q Consensus 581 dl~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~ 619 (642)
|+.-...-.-.+ =.++..|=|+-|+|+|||.|.
T Consensus 179 D~yTiafGIRN~------th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 179 DAYTIAFGIRNV------THIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred eeEEEecceecC------CCHHHHHHHHHHhcCCCcEEE
Confidence 997664433322 247789999999999999887
No 321
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=92.62 E-value=0.079 Score=52.54 Aligned_cols=101 Identities=11% Similarity=0.029 Sum_probs=58.2
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhh----hhcccccccccccccc--CC--CCC-Ccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGFVGVLHDWCEA--FP--TYP-RTYDLVHAE 586 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~----i~~RGl~g~~~~~ce~--~~--typ-rtydl~h~~ 586 (642)
..|+|+|||.|.|+.+|... .|- .||+=++-. .-+-. +-..|+-.+..--+.. ++ .+| .++|.|+..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~-~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQ-NPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHh-CCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 57999999999999999863 332 244444442 22221 2233432111111111 11 234 489988764
Q ss_pred cccccccC---CCCCCCchhhhhhhccccCCCceeeec
Q 006518 587 GLLSLESG---HRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 587 ~~~~~~~~---~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
.- ..|.. .+.|...+.++-|+-|+|+|||.+..+
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 21 22211 124566788999999999999998764
No 322
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.53 E-value=0.52 Score=51.18 Aligned_cols=107 Identities=17% Similarity=0.090 Sum_probs=62.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH--HcCCC-----ceEEeecccCCCCC-CCCccEEEec
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ERGLP-----AMIGSFASKQLPYP-SLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~--ergl~-----~~~~~~da~~Lpfp-d~SFDlV~~s 324 (642)
.+.+|||+|.|+|.-...+..--..--+++-++.|+..-+... ++++. ..-......+++++ ...|++|+..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 4578999999999776655443222234555667765543322 22211 11111223345544 2367777766
Q ss_pred ccccccccc-H-HHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 325 RCGVDWDQK-D-GILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 325 ~~ll~~~~d-~-~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
.-+++.... + ...++.+..++.|||.|+|.+++..
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 544443211 1 2378889999999999999998754
No 323
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.53 E-value=0.096 Score=52.84 Aligned_cols=88 Identities=16% Similarity=0.082 Sum_probs=46.4
Q ss_pred eEEEecCcCchhhhhhhhccC---CCcEEEEeecCCCCCchhhhh----ccccccccccccccCCCCC--Cccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMIL----DRGFVGVLHDWCEAFPTYP--RTYDLVHAEG 587 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~---~~vwvmnv~p~~~~~~l~~i~----~RGl~g~~~~~ce~~~typ--rtydl~h~~~ 587 (642)
..|+|++||+|.+++.|.+.- ..|..+-+-| .-+...- .-|+-.+---....+..++ ..||.|++..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 479999999999998776420 1222222211 2221111 1132111111122222232 6799998854
Q ss_pred ccccccCCCCCCCchhhhhhhccccCCCceeee
Q 006518 588 LLSLESGHRHRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 588 ~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
.+. .+.-++-+.|+|||.++.
T Consensus 154 ~~~------------~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 154 AGP------------DIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred Ccc------------cchHHHHHhhCCCcEEEE
Confidence 332 333455668999999776
No 324
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=92.12 E-value=0.18 Score=57.02 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=42.2
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ 310 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl-~~~~~~~da~~ 310 (642)
..+||+-||||.++..+++. +..|.|++++++.+..|.+. |+ ++.|+++-+++
T Consensus 385 k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred cEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 78999999999999999876 45699999999999887654 44 56677664444
No 325
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.01 E-value=0.0086 Score=52.64 Aligned_cols=94 Identities=22% Similarity=0.214 Sum_probs=55.8
Q ss_pred EEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhccc----c-ccccccccccCCCCCCcccccccccc-ccc
Q 006518 519 VLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-VGVLHDWCEAFPTYPRTYDLVHAEGL-LSL 591 (642)
Q Consensus 519 v~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----l-~g~~~~~ce~~~typrtydl~h~~~~-~~~ 591 (642)
|||++||.|.+..++.+.-+.-=-..++-+|-. ..|-.+.++. + +-.++.=++.++....+||+|=+.+. |..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999862100001355555543 5555555544 2 11111111224444469999999666 555
Q ss_pred ccCCCCCCCchhhhhhhccccCCCc
Q 006518 592 ESGHRHRCSTLDIFTEIDRILRPEV 616 (642)
Q Consensus 592 ~~~~~~~c~~~~~~~e~dRilrP~g 616 (642)
. ..=.++.++=+|=|+|||||
T Consensus 81 ~----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 L----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp S----SHHHHHHHHHHHHHTEEEEE
T ss_pred C----CHHHHHHHHHHHHHHhCCCC
Confidence 3 44567799999999999998
No 326
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=91.82 E-value=0.27 Score=49.76 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=30.3
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ 295 (642)
-.+.|||||.|.+...|+... +..-+.|+++--..-+..+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk 101 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVK 101 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHH
Confidence 458999999999999999875 5567888888544444333
No 327
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.78 E-value=0.65 Score=50.51 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=68.2
Q ss_pred CCCeEEEECCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
++.+|+=+|+| .|..+..+++.- ..+|+++|.+++-.+.|++-|....+...+.....--.+.||+|+..-
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv------ 237 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV------ 237 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC------
Confidence 45788888877 567888888742 267999999999999999988665544222222222122499998652
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 332 QKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
. ...+....+.||+||.+++....
T Consensus 238 ~--~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G--PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C--hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 45778888999999999998765
No 328
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=91.71 E-value=0.051 Score=57.94 Aligned_cols=97 Identities=22% Similarity=0.198 Sum_probs=53.3
Q ss_pred eEEEecCcCchh--hhhhhhccCCCcEEEEeecCCCCCchhhhhccccccccc-cccccCCCCCCccccccccccccccc
Q 006518 517 RNVLDMNAHFGG--FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWCEAFPTYPRTYDLVHAEGLLSLES 593 (642)
Q Consensus 517 rnv~Dm~~~~g~--faa~l~~~~~~vwvmnv~p~~~~~~l~~i~~RGl~g~~~-~~ce~~~typrtydl~h~~~~~~~~~ 593 (642)
..|||+|||+|= .||+++-. +.|.-.-+=|..-.++.--+-.-|+-.-+. ...+.++. ..||||=|+=+...+.
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~vL~ 239 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADVLL 239 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHHHH
T ss_pred CEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHHHH
Confidence 499999999994 56777653 233332222211111111122233321110 01233333 8899998865555544
Q ss_pred CCCCCCCchhhhhhhccccCCCceeeeccCch
Q 006518 594 GHRHRCSTLDIFTEIDRILRPEVSKSNSPIST 625 (642)
Q Consensus 594 ~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~~ 625 (642)
.++=++.+.|+|||+++.|-|-.
T Consensus 240 ---------~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 240 ---------ELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp ---------HHHHHCHHHEEEEEEEEEEEEEG
T ss_pred ---------HHHHHHHHhhCCCCEEEEccccH
Confidence 66777899999999999998754
No 329
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=91.67 E-value=0.18 Score=56.26 Aligned_cols=101 Identities=17% Similarity=0.159 Sum_probs=53.8
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhh---c-ccccccc--c--cccccCCC--CCCccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---D-RGFVGVL--H--DWCEAFPT--YPRTYDLVHA 585 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~---~-RGl~g~~--~--~~ce~~~t--yprtydl~h~ 585 (642)
.+|+||+||.||++.++.+. .+ --.|+-++-. ..+..+- + -|+--.. . |.-+ .+. -+.+||.|-.
T Consensus 240 ~~VLDlcag~G~kt~~la~~-~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~-~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILEL-AP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRG-PSQWAENEQFDRILL 315 (426)
T ss_pred CeEEEeCCCccHHHHHHHHH-cC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccc-ccccccccccCEEEE
Confidence 48999999999999988762 11 0123333432 3333222 2 2431001 1 2111 111 2467999975
Q ss_pred c------cccccccCCC---CCCC-------chhhhhhhccccCCCceeeec
Q 006518 586 E------GLLSLESGHR---HRCS-------TLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 586 ~------~~~~~~~~~~---~~c~-------~~~~~~e~dRilrP~g~~~~~ 621 (642)
+ |++..-..-+ ..=. -..+|-+.=|+|||||.+|+|
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 4 3332210000 0000 136888999999999999976
No 330
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=91.57 E-value=0.87 Score=43.52 Aligned_cols=96 Identities=20% Similarity=0.207 Sum_probs=57.8
Q ss_pred EEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC-C-CCCCccEEEeccccccccc-----cH---HHHHHHHHh
Q 006518 280 CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-Y-PSLSFDMLHCARCGVDWDQ-----KD---GILLLEVDR 343 (642)
Q Consensus 280 sV~giD~S~~ml~~A~er----gl--~~~~~~~da~~Lp-f-pd~SFDlV~~s~~ll~~~~-----d~---~~~L~Ei~R 343 (642)
+|.+.|+-+++++.++++ +. ++.+...+-+.+. + +++.+|+|+.+...+.-.+ .+ -.++..+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 478999999999877655 33 3555555545554 2 3358999999876444322 12 258999999
Q ss_pred cccCCcEEEEEeCCCCchhhhhhHHhHhhhhhhhhhhhc
Q 006518 344 VLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVEN 382 (642)
Q Consensus 344 vLKPGG~Lvis~p~~~~~~~lr~~e~~~~w~~l~~l~~~ 382 (642)
+|+|||.+++....... ....+.+.+..++..
T Consensus 81 lL~~gG~i~iv~Y~GH~-------gG~eE~~av~~~~~~ 112 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHP-------GGKEESEAVEEFLAS 112 (140)
T ss_dssp HEEEEEEEEEEE--STC-------HHHHHHHHHHHHHHT
T ss_pred hhccCCEEEEEEeCCCC-------CCHHHHHHHHHHHHh
Confidence 99999999999876443 223344455555544
No 331
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=91.54 E-value=0.15 Score=54.69 Aligned_cols=100 Identities=18% Similarity=0.139 Sum_probs=58.7
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhh----cccc---cc-ccccccccCCCCCCccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 587 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl---~g-~~~~~ce~~~typrtydl~h~~~ 587 (642)
.+|+|++||.|.++.+|... .|. .+|+-++-. ..+.++- ..|+ |- +-.|+-+.++ +.+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~-~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA-FPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHH-CCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECC
Confidence 47999999999999999862 333 345555543 4443332 2344 22 2235555554 36899998752
Q ss_pred cccc------------cc------CCCCCCC-chhhhhhhccccCCCceeeec
Q 006518 588 LLSL------------ES------GHRHRCS-TLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 588 ~~~~------------~~------~~~~~c~-~~~~~~e~dRilrP~g~~~~~ 621 (642)
=+.. +. .+.+... +..++-+.-+.|+|||.++.-
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1110 00 0000011 247788899999999999874
No 332
>PRK14967 putative methyltransferase; Provisional
Probab=91.47 E-value=0.11 Score=52.52 Aligned_cols=99 Identities=18% Similarity=0.106 Sum_probs=56.5
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhh----cccc--ccccccccccCCCCCCccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl--~g~~~~~ce~~~typrtydl~h~~~~~ 589 (642)
-.|+|++||.|.++..+... .. -+|+-++-. ..+..+- ..|+ .-+-.|+.+.++ +.+||+|.++--|
T Consensus 38 ~~vLDlGcG~G~~~~~la~~--~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 111 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAA--GA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPY 111 (223)
T ss_pred CeEEEecCCHHHHHHHHHHc--CC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCC
Confidence 36999999999998888752 21 134444432 3332221 1233 112245555443 3689999986433
Q ss_pred ccccC--------------CC-CCCCchhhhhhhccccCCCceeeec
Q 006518 590 SLESG--------------HR-HRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 590 ~~~~~--------------~~-~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
..-.. +. ....+..++-++-|+|+|||.++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 21100 00 0112456777899999999999964
No 333
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=91.46 E-value=0.12 Score=50.05 Aligned_cols=116 Identities=21% Similarity=0.148 Sum_probs=65.9
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----ccc---ccccccccccCCCCCCccccccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLHDWCEAFPTYPRTYDLVHAEG 587 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---~g~~~~~ce~~~typrtydl~h~~~ 587 (642)
-.+|+|++||+|-.+.+|.. ..+-.. |+-++-. +-+....+ -|+ --+.+|+.+.++ +..||+|=++-
T Consensus 32 ~~~vLDlG~G~G~i~~~la~-~~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NP 106 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAK-RGPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNP 106 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHH-TSTCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE--
T ss_pred CCeEEEecCChHHHHHHHHH-hCCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEcc
Confidence 34699999999999998886 345443 3333332 33332211 232 234567777776 58999987654
Q ss_pred ccccccCCCCCCCchhhhhhhccccCCCcee--eeccCchhhHHHHHHhhhh
Q 006518 588 LLSLESGHRHRCSTLDIFTEIDRILRPEVSK--SNSPISTCHICLLCLFTSV 637 (642)
Q Consensus 588 ~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~--~~~~~~~~~~~~~~~~~~~ 637 (642)
=|..-. ......+..++-+-=++|+|||.+ +.+.-..-..-+-=+|+.|
T Consensus 107 P~~~~~-~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~~~ 157 (170)
T PF05175_consen 107 PFHAGG-DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFGDV 157 (170)
T ss_dssp -SBTTS-HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--
T ss_pred chhccc-ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcCCE
Confidence 322110 001123568888999999999976 5554443443444455543
No 334
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=91.44 E-value=0.38 Score=48.76 Aligned_cols=103 Identities=10% Similarity=-0.043 Sum_probs=54.5
Q ss_pred CCCeEEEECCCCchHHHHHhhc---CCceeEEEEecCCHHHHHH-HHHc---CCCceEEeecccCCC-------C-CCCC
Q 006518 253 GVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQL-TLER---GLPAMIGSFASKQLP-------Y-PSLS 317 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~---g~~~~sV~giD~S~~ml~~-A~er---gl~~~~~~~da~~Lp-------f-pd~S 317 (642)
++++|+|+|.-.|..+..+|+. -.....|.++|+.....+. +.+. .-.+.+.+++..+.. . ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4589999999999887777642 1245689999995433322 2222 135566777655432 1 1123
Q ss_pred ccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 318 FDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 318 FDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
-.+|+-- + .|..++..+.|+....+++||+|+++.|..
T Consensus 112 ~vlVilD-s-~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 112 PVLVILD-S-SHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SEEEEES-S-----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred ceEEEEC-C-CccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 3455543 3 455567778888899999999999997654
No 335
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=91.15 E-value=0.27 Score=49.47 Aligned_cols=94 Identities=14% Similarity=0.102 Sum_probs=58.8
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcccc-cccc-ccccccCCCCCCcccccccccccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVL-HDWCEAFPTYPRTYDLVHAEGLLSLE 592 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-~g~~-~~~ce~~~typrtydl~h~~~~~~~~ 592 (642)
-..|+|+|||.|.+..+|.+. .+- .+|+-++-. ..+...-++-- +.+. .|-.++|+ +.+||+|-+.++|.++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~-~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL-LPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC
Confidence 356999999999999999752 111 245555543 44444433210 1122 23334333 4899999999999876
Q ss_pred cCCCCCCCchhhhhhhccccCCCceeee
Q 006518 593 SGHRHRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 593 ~~~~~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
. .-.+..++-||-|++ +++++.
T Consensus 119 ~----p~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 119 N----PDNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred C----HHHHHHHHHHHHhhc--CcEEEE
Confidence 3 235678889999998 456655
No 336
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=90.87 E-value=0.18 Score=50.36 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=48.2
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----cccc--ccc-ccccccCCCCC--Ccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV--GVL-HDWCEAFPTYP--RTYDLVHAE 586 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl~--g~~-~~~ce~~~typ--rtydl~h~~ 586 (642)
..|+|++||+|.+++.|.+... .|+-++.. +-+...-+ -|+- -+. .|. +.++| .+||+|.++
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~-----~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~~~ 151 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR-----RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG---WKGWPAYAPFDRILVT 151 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC-----EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc---ccCCCcCCCcCEEEEc
Confidence 4799999999999987765311 23333332 22222211 1331 111 121 22333 679999875
Q ss_pred cccccccCCCCCCCchhhhhhhccccCCCceeeecc
Q 006518 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSP 622 (642)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~ 622 (642)
..+. .+.-++-+.|+|||.++.+-
T Consensus 152 ~~~~------------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 152 AAAP------------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred cCch------------hhhHHHHHhcCCCcEEEEEE
Confidence 5332 22334568999999988753
No 337
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.52 E-value=0.075 Score=54.55 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=77.7
Q ss_pred CCcceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhccccc-cccccccccCC--CCCCcccccccccc
Q 006518 513 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFV-GVLHDWCEAFP--TYPRTYDLVHAEGL 588 (642)
Q Consensus 513 ~~~~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl~-g~~~~~ce~~~--typrtydl~h~~~~ 588 (642)
.+.+|.++|.|||+|=++-+|.+. +=-..=++-+ |-|-...|+|+- -+||-=-+.|. +-+.-+|||-|..+
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~-----a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDM-----ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred CCccceeeecccCcCcccHhHHHH-----HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 456999999999999999999862 1123334434 888899999982 22222223355 56788999999999
Q ss_pred cccccCCCCCCCchhhhhhhccccCCCceeeeccCchhh
Q 006518 589 LSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPISTCH 627 (642)
Q Consensus 589 ~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~~~~ 627 (642)
|.-+ -.++.|+.=.++.|.|||.+..|--.-|.
T Consensus 198 l~Yl------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 198 LPYL------GALEGLFAGAAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred HHhh------cchhhHHHHHHHhcCCCceEEEEecccCC
Confidence 9855 46889999999999999999998765553
No 338
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=90.24 E-value=0.24 Score=51.16 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=54.7
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc---cc----ccccccccccCCCCCCcccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GF----VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R---Gl----~g~~~~~ce~~~typrtydl~h~~~~ 588 (642)
.+|+|++||.|.++.+|... .+-+ +|+-++.. ..+..+-++ +. -=+-.|+-++++ +.+||+|-++--
T Consensus 110 ~~vLDiG~GsG~~~~~la~~-~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npP 184 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKE-RPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPP 184 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHH-CCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCC
Confidence 36999999999999999863 2222 34444433 333322221 21 112234544443 478999977532
Q ss_pred ccccc-------------------CCCCCC-CchhhhhhhccccCCCceeeec
Q 006518 589 LSLES-------------------GHRHRC-STLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 589 ~~~~~-------------------~~~~~c-~~~~~~~e~dRilrP~g~~~~~ 621 (642)
+.... .+.+.. .+..++-++-++|+|||+++..
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 21110 000000 0235677788999999999974
No 339
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=90.06 E-value=0.21 Score=51.60 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=69.2
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcccc-cccccccccc----CCCCCCccccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCEA----FPTYPRTYDLVHAEGLLSL 591 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-~g~~~~~ce~----~~typrtydl~h~~~~~~~ 591 (642)
.|+|+|||-|-++-.|...+ -||+=+|+. ..+.+.-.+.+ -|+.-||-.. +-.==-+||.|=|..++.+
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G-----a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG-----ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred eEEEecCCccHhhHHHHHCC-----CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 49999999999999999865 588888886 67776654444 2333333211 1000035777777777765
Q ss_pred ccCCCCCCCchhhhhhhccccCCCceeeeccCchhh
Q 006518 592 ESGHRHRCSTLDIFTEIDRILRPEVSKSNSPISTCH 627 (642)
Q Consensus 592 ~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~~~~ 627 (642)
.. +.+.++-+..+.+||||.++.|-|..=-
T Consensus 137 v~------dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 137 VP------DPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred cC------CHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 53 4557999999999999999999887443
No 340
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=90.00 E-value=0.23 Score=52.51 Aligned_cols=100 Identities=17% Similarity=0.112 Sum_probs=56.5
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----cccc---c-ccccccccCCCCCCccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---G-VLHDWCEAFPTYPRTYDLVHAEG 587 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl~---g-~~~~~ce~~~typrtydl~h~~~ 587 (642)
.+|+|++||+|.++.+|... .+- .+|+-++-. ..+.++-+ .|+- - +..|+-+.++ +.+||+|-++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~-~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYA-FPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECC
Confidence 47999999999999999863 221 244555543 33333322 3542 1 2234444443 25799988752
Q ss_pred cccc------cc------------CCCCCCC-chhhhhhhccccCCCceeeec
Q 006518 588 LLSL------ES------------GHRHRCS-TLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 588 ~~~~------~~------------~~~~~c~-~~~~~~e~dRilrP~g~~~~~ 621 (642)
=+.. .. .+.+... +..++-+.-+.|+|||.++.-
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1110 00 0001111 246788899999999999853
No 341
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=89.92 E-value=0.2 Score=50.88 Aligned_cols=100 Identities=22% Similarity=0.274 Sum_probs=55.9
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhh----hcccc--cccc-ccccccCCCCCCcccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 588 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGl--~g~~-~~~ce~~~typrtydl~h~~~~ 588 (642)
.+|+|++||.|.|+.++.+. .+-+ +|+-++.. ..+..+ -..|+ +-++ .|+-+.++ +.+||+|-++--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~-~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKE-RPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHH-CCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCC
Confidence 36999999999999999863 2221 44444432 222211 22343 1122 23333333 378999987544
Q ss_pred cccccC---CCCCCC-----------------chhhhhhhccccCCCceeeec
Q 006518 589 LSLESG---HRHRCS-----------------TLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 589 ~~~~~~---~~~~c~-----------------~~~~~~e~dRilrP~g~~~~~ 621 (642)
|..... ...... ...++-++-|+|+|||.++..
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 432110 000000 135677899999999999874
No 342
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=89.71 E-value=0.016 Score=52.00 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=41.7
Q ss_pred ccccceechhhhhHHHHhhhhhccCCCccCCccccccCCCCccccCCchhhhhhccccccccccCCCCc
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQE 162 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~~~~~y~pC~d~~~~~~~~~~r~~~~er~C~~~ 162 (642)
..||||.|++.++.++..|+.+..-|. +++++.. |++.......+.++.+.+++.+...
T Consensus 32 ~~~g~R~Y~~~~l~~l~~I~~l~~~G~---~l~ei~~-------~l~~~~~~~~l~~~~~~l~~~i~~l 90 (102)
T cd04789 32 NANGYRLYPDSDLQRLLLIQQLQAGGL---SLKECLA-------CLQGKLTRSLLLERLSSLAEQIARK 90 (102)
T ss_pred CCCCCeeCCHHHHHHHHHHHHHHHCCC---CHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 349999999999999999999988777 6776665 4433333344555666666655543
No 343
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=89.69 E-value=0.33 Score=50.70 Aligned_cols=106 Identities=22% Similarity=0.214 Sum_probs=55.1
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----ccc--cccc-ccccccCCCCCCccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVL-HDWCEAFPTYPRTYDLVHAEGLL 589 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--~g~~-~~~ce~~~typrtydl~h~~~~~ 589 (642)
.|+||+||.||++.+|.+.-.+- -.|+-++.. .-+..+-+ .|+ +-++ +|- ..++.....||.|-.+-=.
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNE--GAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCC--CEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEcCCC
Confidence 59999999999998776421000 024444443 33332222 243 1122 222 2233333458888654322
Q ss_pred ccccCCC-C-----CC---C-------chhhhhhhccccCCCceeeeccCchhhHH
Q 006518 590 SLESGHR-H-----RC---S-------TLDIFTEIDRILRPEVSKSNSPISTCHIC 629 (642)
Q Consensus 590 ~~~~~~~-~-----~c---~-------~~~~~~e~dRilrP~g~~~~~~~~~~~~~ 629 (642)
|....-+ + +- . -..||-++=++|||||++|+| ||.+.
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs---tcs~~ 203 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS---TCSLE 203 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE---eCCCC
Confidence 2210000 0 00 0 125888889999999999975 56543
No 344
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=89.48 E-value=0.39 Score=53.66 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=54.8
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhh---cc-cc-c-cccccccccCCCC-CCccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DR-GF-V-GVLHDWCEAFPTY-PRTYDLVHAEGLL 589 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~---~R-Gl-~-g~~~~~ce~~~ty-prtydl~h~~~~~ 589 (642)
.|+|++||.|+++.+|.+.... ..|+-++.. ..+..+- +| |+ + -+-+|-.+....+ +.+||.|=++-=+
T Consensus 247 ~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 247 RVLDACAAPGGKTAHILELAPQ---AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred EEEEeCCCCChHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 6999999999999988863211 134444432 3333221 22 32 1 1223433322222 3679998754333
Q ss_pred ccccC-CCCC---------------CCchhhhhhhccccCCCceeeecc
Q 006518 590 SLESG-HRHR---------------CSTLDIFTEIDRILRPEVSKSNSP 622 (642)
Q Consensus 590 ~~~~~-~~~~---------------c~~~~~~~e~dRilrP~g~~~~~~ 622 (642)
+.... .++. .....+|-+.=++|+|||.+++|-
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 22100 0000 011267888999999999999653
No 345
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=89.34 E-value=0.27 Score=55.07 Aligned_cols=104 Identities=16% Similarity=0.109 Sum_probs=57.0
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----cccc---cccccccccCC-CCCCcccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFP-TYPRTYDLVHAEGL 588 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl~---g~~~~~ce~~~-typrtydl~h~~~~ 588 (642)
+|+||+||.||.+.+|.+.-.+- -.|+-+|-. .-|..+-+ .|+- -+-.|..+ ++ ..+.+||.|=++--
T Consensus 240 ~VLD~cagpGgkt~~la~~~~~~--g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 240 RVLDTCAAPGGKTTAIAELMKDQ--GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVDAP 316 (431)
T ss_pred EEEEeCCCccHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEECCC
Confidence 69999999999988777521111 134545543 44443322 2441 12234332 23 22467999866433
Q ss_pred cccccCCCCCC---------C-------chhhhhhhccccCCCceeeeccCc
Q 006518 589 LSLESGHRHRC---------S-------TLDIFTEIDRILRPEVSKSNSPIS 624 (642)
Q Consensus 589 ~~~~~~~~~~c---------~-------~~~~~~e~dRilrP~g~~~~~~~~ 624 (642)
-|....-+.+= . -..||-+.=+.|+|||.+++|.-|
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 32221000000 0 125677888999999999997544
No 346
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=89.32 E-value=0.24 Score=54.85 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=60.6
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-C----chhhhhcccccc---ccccc---cccCCCCCCccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-N----HLPMILDRGFVG---VLHDW---CEAFPTYPRTYDLVHA 585 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~----~l~~i~~RGl~g---~~~~~---ce~~~typrtydl~h~ 585 (642)
..++|+|||.|.|..+|... .|-+ |++=++-. . ...-+..+|+-. +..|- -+.|+ +.++|.|+.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~-~P~~--~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~l 198 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKN-NPNK--LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFV 198 (390)
T ss_pred CeEEEEcCcccHHHHHHHHh-CCCC--CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEE
Confidence 47999999999999999863 3322 44444432 1 122344556522 22232 23344 388999987
Q ss_pred ccccccccCCCCC-CCchhhhhhhccccCCCceeeec
Q 006518 586 EGLLSLESGHRHR-CSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 586 ~~~~~~~~~~~~~-c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
.. =..|...++| =-...+|-|+=|+|+|||.+...
T Consensus 199 nF-PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 199 HF-PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred eC-CCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 42 1335422232 22368999999999999998864
No 347
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=89.28 E-value=0.36 Score=50.52 Aligned_cols=91 Identities=21% Similarity=0.368 Sum_probs=63.1
Q ss_pred cceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCCCchh-hhhccccc-cccccccccCCCCCCcccccccccccccc
Q 006518 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP-MILDRGFV-GVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (642)
Q Consensus 515 ~~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~-~i~~RGl~-g~~~~~ce~~~typrtydl~h~~~~~~~~ 592 (642)
+..+++|+|||-|+--+.|... .=+|.-+++.-+.- -.-+||+- =-..||-+. +..||+|-|-+|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-----f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL--- 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-----FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL--- 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-----cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh---
Confidence 4678999999999999888642 12344444432221 23468872 123346643 4679999997777
Q ss_pred cCCCCCCCch-hhhhhhccccCCCceeeec
Q 006518 593 SGHRHRCSTL-DIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 593 ~~~~~~c~~~-~~~~e~dRilrP~g~~~~~ 621 (642)
+||.-. .+|-+|-+-|+|+|.++++
T Consensus 162 ----DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 ----DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ----hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 568755 7788999999999999876
No 348
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.25 E-value=2.1 Score=46.74 Aligned_cols=102 Identities=15% Similarity=0.043 Sum_probs=66.1
Q ss_pred CCCeEEEECCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC-C-----CC-CCCCccEEEec
Q 006518 253 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-L-----PY-PSLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~-L-----pf-pd~SFDlV~~s 324 (642)
+..+||.+|||. |..+..+++... ...+++++.+++.++.+++.+. ..+......+ + .+ ....+|+|+-.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 347899999987 888888887631 2358889999999999988731 2222111111 1 12 23369999875
Q ss_pred cccc--------------cccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 325 RCGV--------------DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 325 ~~ll--------------~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.... +-..+....+.++.+.|+|+|.+++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 2100 0112335688999999999999998754
No 349
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=89.24 E-value=0.29 Score=54.82 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=52.0
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----cccccccccccccC---C----CCCCccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAF---P----TYPRTYDLVHA 585 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl~g~~~~~ce~~---~----typrtydl~h~ 585 (642)
.|+||+||.||++.+|.+.-.+- -.|+-++-. .-+..+-+ -|+-. ..--|.-. + ..+.+||.|=+
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMGDQ--GEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEEEE
Confidence 69999999999998887520000 023444432 33332222 23311 11111111 1 22367898764
Q ss_pred cc------ccccccCCC---CCCC-------chhhhhhhccccCCCceeeec
Q 006518 586 EG------LLSLESGHR---HRCS-------TLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 586 ~~------~~~~~~~~~---~~c~-------~~~~~~e~dRilrP~g~~~~~ 621 (642)
+- .+..-...+ ..-. ...||-++=|.|||||.+|+|
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys 383 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA 383 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 32 221100000 0011 247888999999999999985
No 350
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=89.22 E-value=0.19 Score=53.49 Aligned_cols=98 Identities=11% Similarity=0.100 Sum_probs=60.0
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc------cc--ccccccccccCCCCCCcc----c-c
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GF--VGVLHDWCEAFPTYPRTY----D-L 582 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R------Gl--~g~~~~~ce~~~typrty----d-l 582 (642)
.+|+|+|||+|.++..|++.-.. ..+|+++|-. .-|....++ ++ .++..|-++.++. |..+ + +
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~--~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~-~~~~~~~~~~~ 141 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ--PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL-PPEPAAGRRLG 141 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc--CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh-hcccccCCeEE
Confidence 46999999999999998863111 2468888876 555555443 22 3445566554432 2333 2 3
Q ss_pred cccccccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 583 ~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
+...+.|... .+-....+|-++=+.|+|||.++..
T Consensus 142 ~~~gs~~~~~----~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNF----TPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCC----CHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3332333322 1223457899999999999999853
No 351
>PRK13699 putative methylase; Provisional
Probab=89.20 E-value=0.97 Score=46.36 Aligned_cols=81 Identities=15% Similarity=0.013 Sum_probs=45.7
Q ss_pred EeecccCC--CCCCCCccEEEeccccc---cc--c---------ccHHHHHHHHHhcccCCcEEEEEeCCCCchhhhhhH
Q 006518 304 GSFASKQL--PYPSLSFDMLHCARCGV---DW--D---------QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK 367 (642)
Q Consensus 304 ~~~da~~L--pfpd~SFDlV~~s~~ll---~~--~---------~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~ 367 (642)
..+|..++ .++++++|+|++.--.. .. . +-....+.|++|+|||||.+++-.....
T Consensus 5 ~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~-------- 76 (227)
T PRK13699 5 ILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR-------- 76 (227)
T ss_pred EechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc--------
Confidence 34444333 46788888888863210 00 0 0124688999999999999886322110
Q ss_pred HhHhhhhhhhhhhhccceEEeeecCceEEEEecC
Q 006518 368 ENQKRWNFVRDFVENLCWELVSQQDETVVWKKTS 401 (642)
Q Consensus 368 e~~~~w~~l~~l~~~lcW~ll~~~~~~~IwqK~~ 401 (642)
...+....++.+|... +..||.|..
T Consensus 77 -----~~~~~~al~~~GF~l~----~~IiW~K~~ 101 (227)
T PRK13699 77 -----VDRFMAAWKNAGFSVV----GHLVFTKNY 101 (227)
T ss_pred -----HHHHHHHHHHCCCEEe----eEEEEECCC
Confidence 0111223345556543 567899876
No 352
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=89.10 E-value=1.9 Score=44.96 Aligned_cols=128 Identities=19% Similarity=0.251 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEeccccc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll 328 (642)
.+.+|+|||||.=-++....... ....++++|++..++++..+ .+.+..+...|...-+ +....|+.+..-+ +
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~-l 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKT-L 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--H
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHH-H
Confidence 36899999999999998887653 34589999999999987653 3566666666654443 3457999988765 4
Q ss_pred cccccH--HHHHHHHHhcccCCcEEEEEeCCCCchhhhhhHHh-HhhhhhhhhhhhccceEE
Q 006518 329 DWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN-QKRWNFVRDFVENLCWEL 387 (642)
Q Consensus 329 ~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~-~~~w~~l~~l~~~lcW~l 387 (642)
+..+.. +..+.-+..+=.| .+++|.|...--+ |+.-. ..--..++..+..-.|..
T Consensus 182 p~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL~g--R~~gm~~~y~~~fe~~~~~~~~~~ 239 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDALRSP--HVVVSFPTRSLGG--RNKGMEQTYSAWFEALAAERGWIV 239 (251)
T ss_dssp HHHHHHSTTHHHHHHHHSCES--EEEEEEES---------TTHHHCHHHHHHHHCCTTCEEE
T ss_pred HHHHHHhcchHHHHHHHhCCC--eEEEecccccccc--CccccccCHHHHHHHhcccCCcee
Confidence 443322 2233333333333 6677776543211 11111 112244567777777763
No 353
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=89.09 E-value=0.28 Score=55.06 Aligned_cols=103 Identities=18% Similarity=0.160 Sum_probs=55.1
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhh----hcccc--c-cccccccccCCCCCCcccccccc--
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--V-GVLHDWCEAFPTYPRTYDLVHAE-- 586 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGl--~-g~~~~~ce~~~typrtydl~h~~-- 586 (642)
..|+|++||.|+++.+|.+.-.+. -.|+-++-. .-+..+ -..|+ | -+-+|..+.. -+.+||.|=.+
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~P 327 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNR--GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDAP 327 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcCC
Confidence 469999999999887665410000 134444443 333322 22344 1 1223333222 13579998643
Q ss_pred ----ccccc-----ccCCCCCCCc-------hhhhhhhccccCCCceeeeccCchhhH
Q 006518 587 ----GLLSL-----ESGHRHRCST-------LDIFTEIDRILRPEVSKSNSPISTCHI 628 (642)
Q Consensus 587 ----~~~~~-----~~~~~~~c~~-------~~~~~e~dRilrP~g~~~~~~~~~~~~ 628 (642)
|.+.. |.. ..-.+ ..+|-++=|+|||||.+++ +||.+
T Consensus 328 csg~g~~~r~p~~~~~~--~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvy---stcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKL--TPEKLAELVGLQAELLDHAASLLKPGGVLVY---ATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcC--CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE---EeCCC
Confidence 23221 100 00111 2588899999999999999 56654
No 354
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=88.75 E-value=3.1 Score=43.42 Aligned_cols=103 Identities=13% Similarity=0.196 Sum_probs=61.1
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHH--HHHHHc--------CCCceEEeec---ccCCCCCCCC-cc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV--QLTLER--------GLPAMIGSFA---SKQLPYPSLS-FD 319 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml--~~A~er--------gl~~~~~~~d---a~~Lpfpd~S-FD 319 (642)
..+||++|+|+|..+...+... ...+.-.|...... +...+. |..+.+..++ .....+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh--cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4679999999998777777643 23455566653332 222111 2122222111 1111111123 99
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 320 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 320 lV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
+|+++.+.++ ....+.++.-+...|-.+|.+++..+...
T Consensus 165 lilasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYE-EESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeec-CCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999444 45567788899999999997777766433
No 355
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.49 E-value=2.5 Score=44.25 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=62.7
Q ss_pred CCCeEEEECCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----CCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~L-----pfpd~SFDlV~~s~~ 326 (642)
...+||..|+| .|..+..+++.. ...++.++.++...+.+++.|....+..-+ ... ....+.+|+|+....
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g 241 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVG 241 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCC
Confidence 34688888876 477777777752 244788899999999888777543222110 010 123457998875422
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
....+.++.+.|+++|.++....
T Consensus 242 -------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 -------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEECC
Confidence 13478889999999999997654
No 356
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=88.36 E-value=1.6 Score=46.72 Aligned_cols=96 Identities=20% Similarity=0.198 Sum_probs=48.8
Q ss_pred chhhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCC--c
Q 006518 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP--A 301 (642)
Q Consensus 229 ~~~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er-----gl~--~ 301 (642)
....|+..+.+++...... . ...-++||||+|..-.=..|..+- ...+++|.|+++..++.|++. ++. +
T Consensus 81 ~R~nYi~~i~DlL~~~~~~--~-~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I 156 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPG--I-PEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRI 156 (299)
T ss_dssp HHHHHHHHHHHHHT--TCG--C-S---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTE
T ss_pred hhHHHHHHHHHHhhccccc--c-ccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccce
Confidence 3568888899888754330 0 114689999999875533333321 247899999999999988753 333 2
Q ss_pred eEEeeccc-C----CCCCCCCccEEEeccccc
Q 006518 302 MIGSFASK-Q----LPYPSLSFDMLHCARCGV 328 (642)
Q Consensus 302 ~~~~~da~-~----Lpfpd~SFDlV~~s~~ll 328 (642)
.+...... . +-.+++.||+..|+--++
T Consensus 157 ~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 157 ELRKQKNPDNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp EEEE--ST-SSTTTSTT--S-EEEEEE-----
T ss_pred EEEEcCCccccchhhhcccceeeEEecCCccc
Confidence 23222111 1 122346899999997633
No 357
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=88.02 E-value=0.31 Score=52.13 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=51.7
Q ss_pred cceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC----Cchhhhhc----cccccccccccccCCCCC--Ccccccc
Q 006518 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLPMILD----RGFVGVLHDWCEAFPTYP--RTYDLVH 584 (642)
Q Consensus 515 ~~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~----~~l~~i~~----RGl~g~~~~~ce~~~typ--rtydl~h 584 (642)
.-+||+|.|||+|=+|=|.++ +...++-+. -.+.+..| -|+--+.+.-+-..++-| +.||+|=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~k-------LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIV 234 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAK-------LGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIV 234 (300)
T ss_pred CCCEEEEecCChhHHHHHHHH-------cCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEE
Confidence 368999999999988766654 222322222 22222222 111101111111122223 4789987
Q ss_pred cccccccccCCCCCCCchhhhhhhccccCCCceeeeccCch
Q 006518 585 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIST 625 (642)
Q Consensus 585 ~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~~ 625 (642)
|+=|=... ..+.=++-|.|+|||++++|-|-.
T Consensus 235 ANILA~vl---------~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 235 ANILAEVL---------VELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred ehhhHHHH---------HHHHHHHHHHcCCCceEEEEeehH
Confidence 73221111 144456789999999999998754
No 358
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=88.01 E-value=1.3 Score=48.18 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=38.7
Q ss_pred CCCeEEEECCCCchHHHHHhhc---------------CCceeEEEEecCCHHHH-HHHH--H------cCCCceEEe---
Q 006518 253 GVRTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASGSQV-QLTL--E------RGLPAMIGS--- 305 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~---------------g~~~~sV~giD~S~~ml-~~A~--e------rgl~~~~~~--- 305 (642)
+.-+|+|+||..|..+..+.+. ..+...|.-.|.-..-- ...+ . ...+..|..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4568999999999998877653 11235566666532111 1110 0 001222322
Q ss_pred ecccCCCCCCCCccEEEecccccccc
Q 006518 306 FASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 306 ~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
++...--||++|.|+++++.+ +||.
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~a-lHWL 120 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYA-LHWL 120 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES--TTB-
T ss_pred chhhhccCCCCceEEEEEech-hhhc
Confidence 233333489999999999988 8885
No 359
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=87.78 E-value=2.5 Score=45.16 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=60.2
Q ss_pred CCeEEEECCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEee--cccCCCCCCCCccEEEeccccccc
Q 006518 254 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSF--ASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 254 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~--da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
..+||=+||| .|.++..+++.. -...|+++|.+++.++.+++.|....+... +...+....+.||+|+-...
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 4788888876 455566666542 112577889999999999988754332110 11111111235898876532
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 331 DQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
. ...+....+.|++||.+++...
T Consensus 245 --~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 --H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2467788899999999998754
No 360
>PRK04457 spermidine synthase; Provisional
Probab=87.54 E-value=0.38 Score=50.33 Aligned_cols=101 Identities=10% Similarity=0.055 Sum_probs=57.4
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCC-CCchhhhhcc-ccc------c-ccccccccCCCCCCcccccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG-TNHLPMILDR-GFV------G-VLHDWCEAFPTYPRTYDLVHAE 586 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~-~~~l~~i~~R-Gl~------g-~~~~~ce~~~typrtydl~h~~ 586 (642)
-++|+|+|+|.|.++..+... .|. +.|+-++- +..+.+.-+. ++. - +..|--+-+...|.+||+|=.+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~-~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTY-LPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 568999999999999888652 231 23333333 2333322222 111 1 1122222234456789999765
Q ss_pred cccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
. |+.... ........++-++=++|+|||.++..
T Consensus 144 ~-~~~~~~-~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 G-FDGEGI-IDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred C-CCCCCC-ccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 2 332110 01123468889999999999999863
No 361
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=87.50 E-value=0.3 Score=52.52 Aligned_cols=98 Identities=17% Similarity=0.116 Sum_probs=52.6
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhh----hhcccccc--c-cccccccCCCCCCccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGFVG--V-LHDWCEAFPTYPRTYDLVHAEGLL 589 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~----i~~RGl~g--~-~~~~ce~~~typrtydl~h~~~~~ 589 (642)
.|+|..||+|+|+..+.... .+|+=++.. ..+.. +-.-|+-. + ..|-. .++.-+.+||+|=++-=|
T Consensus 185 ~vLDp~cGtG~~lieaa~~~-----~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMG-----AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPPY 258 (329)
T ss_pred EEEECCCCCCHHHHHHHHhC-----CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCCC
Confidence 69999999999965443221 133433432 22221 11124432 1 12221 233334689998775333
Q ss_pred cc---ccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 590 SL---ESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 590 ~~---~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
.. ............+|-|+-|+|+|||+++..
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 21 110001123468999999999999988754
No 362
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=87.23 E-value=0.61 Score=49.93 Aligned_cols=96 Identities=25% Similarity=0.298 Sum_probs=64.3
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCCCchhhhhccccccccc--c----ccccCCCCCCccccccccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH--D----WCEAFPTYPRTYDLVHAEGLL 589 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~i~~RGl~g~~~--~----~ce~~~typrtydl~h~~~~~ 589 (642)
=|.|+|+|||-|-|.=.|+.. .+--|.-+=|..- -.+++-+-+-++|.-. - ==|.+|. ..+||.|-+.|+|
T Consensus 116 gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 469999999999999888864 4555555544332 2333333333433211 0 1134566 7899999999998
Q ss_pred ccccCCCCCCCchhhhhhhccccCCCceeee
Q 006518 590 SLESGHRHRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 590 ~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
= ||=+-.+.|.++=..|||||-+|+
T Consensus 193 Y------Hrr~Pl~~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 193 Y------HRRSPLDHLKQLKDSLRPGGELVL 217 (315)
T ss_pred h------ccCCHHHHHHHHHHhhCCCCEEEE
Confidence 7 444566788899999999998874
No 363
>PRK07402 precorrin-6B methylase; Provisional
Probab=87.14 E-value=0.55 Score=46.42 Aligned_cols=96 Identities=17% Similarity=0.091 Sum_probs=50.3
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhh----cccc--ccccc-cccccCCCCCCcccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VGVLH-DWCEAFPTYPRTYDLVHAEGL 588 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl--~g~~~-~~ce~~~typrtydl~h~~~~ 588 (642)
..|+|++||+|.++..+....... .|+-++-. ..+..+- +.|+ +-+.+ |--+.++..+-.+|.++.+
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~---~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~-- 116 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKG---RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE-- 116 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE--
Confidence 369999999999988775321112 23333332 2222211 1233 11111 1111111111123554432
Q ss_pred cccccCCCCCCCchhhhhhhccccCCCceeeeccCch
Q 006518 589 LSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIST 625 (642)
Q Consensus 589 ~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~~ 625 (642)
....+..++-++-|+|+|||.++..-.+.
T Consensus 117 --------~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 117 --------GGRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred --------CCcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 12356789999999999999998775443
No 364
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=86.97 E-value=1.9 Score=49.15 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=74.1
Q ss_pred CCeEEEECCCCchHHHHHhhc---CCceeEEEEecCCHHHHHHHHHcC-----CCceEEeecccCCCCCCCCccEEEecc
Q 006518 254 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCAR 325 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~---g~~~~sV~giD~S~~ml~~A~erg-----l~~~~~~~da~~Lpfpd~SFDlV~~s~ 325 (642)
...|+=+|+|.|-+.....+. -...+++++++-++.++-..+.++ -.+.++..|+..++-|....|++++..
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 457889999999876554432 224678999999998886665553 356778889999996668899999864
Q ss_pred ccccccccH--HHHHHHHHhcccCCcEEEEE
Q 006518 326 CGVDWDQKD--GILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 326 ~ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis 354 (642)
. =.+.++. ..-|.-+.+.|||.|..+=+
T Consensus 448 L-GSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 L-GSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred h-ccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 3 3444443 46899999999999987744
No 365
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=86.83 E-value=0.37 Score=49.92 Aligned_cols=89 Identities=16% Similarity=0.085 Sum_probs=62.5
Q ss_pred cceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-CchhhhhccccccccccccccC--------CCCCCccccccc
Q 006518 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAF--------PTYPRTYDLVHA 585 (642)
Q Consensus 515 ~~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl~g~~~~~ce~~--------~typrtydl~h~ 585 (642)
.-|...|.|||.| +||..+..- -=||+-+|-. .+|. +..-+.--+||+--.++ ..=+.+-|||-|
T Consensus 33 ~h~~a~DvG~G~G-qa~~~iae~----~k~VIatD~s~~mL~-~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 33 GHRLAWDVGTGNG-QAARGIAEH----YKEVIATDVSEAMLK-VAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred CcceEEEeccCCC-cchHHHHHh----hhhheeecCCHHHHH-HhhcCCCcccccCCccccccccccccCCCcceeeehh
Confidence 3569999999999 888777532 1377777766 6666 34445555555543333 333788999876
Q ss_pred ccccccccCCCCCCCchhhhhhhccccCCCc
Q 006518 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEV 616 (642)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g 616 (642)
...| |=|+++..+-++-|||||.|
T Consensus 107 Aqa~-------HWFdle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 107 AQAV-------HWFDLERFYKEAYRVLRKDG 130 (261)
T ss_pred hhhH-------HhhchHHHHHHHHHHcCCCC
Confidence 4443 44788899999999999999
No 366
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=86.77 E-value=0.27 Score=47.88 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=49.4
Q ss_pred CCcceEEEecCcCchhhhhhhhccC---CCcEEEEeecCCCCCchhhhhccccc---cccccccccCCCCCCcccccccc
Q 006518 513 YNMVRNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILDRGFV---GVLHDWCEAFPTYPRTYDLVHAE 586 (642)
Q Consensus 513 ~~~~rnv~Dm~~~~g~faa~l~~~~---~~vwvmnv~p~~~~~~l~~i~~RGl~---g~~~~~ce~~~typrtydl~h~~ 586 (642)
.+.-.+|+|.+|+.|||...+++.. ..|+-+-+.|......+..+ +|=+ .....-.+.++.=...+|+|-+|
T Consensus 21 ~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 21 PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceeccc
Confidence 4568999999999999999999743 12333333333222222222 2211 11111222222112579999998
Q ss_pred cccccccCCCCCC--Cchhhhh---hhccccCCCceeeeccC
Q 006518 587 GLLSLESGHRHRC--STLDIFT---EIDRILRPEVSKSNSPI 623 (642)
Q Consensus 587 ~~~~~~~~~~~~c--~~~~~~~---e~dRilrP~g~~~~~~~ 623 (642)
+-+.......... .+.-++- =+-..|+|||.+|.--.
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 8544321000000 0111111 22355999998776443
No 367
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=86.17 E-value=0.53 Score=49.59 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=57.4
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----ccc---c-cccccccccCCCCCCccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---V-GVLHDWCEAFPTYPRTYDLVHAEG 587 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---~-g~~~~~ce~~~typrtydl~h~~~ 587 (642)
..|+|++||.|.++.+|... .+-+ +|+-++-. ..+.++-+ .|+ + =+-.||.++++. ..||+|-++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~-~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYE-FPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHH-CCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECC
Confidence 46999999999999999863 2322 44444443 34433332 233 1 223577776642 3789986541
Q ss_pred c-------------cccc-----cCCCCCC-CchhhhhhhccccCCCceeeec
Q 006518 588 L-------------LSLE-----SGHRHRC-STLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 588 ~-------------~~~~-----~~~~~~c-~~~~~~~e~dRilrP~g~~~~~ 621 (642)
= +... ..+.+.- .+..++-+.-+.|+|||+++..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1 1000 0000000 2346788899999999999864
No 368
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=85.53 E-value=3.3 Score=44.54 Aligned_cols=85 Identities=9% Similarity=0.050 Sum_probs=56.9
Q ss_pred hhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCceEEeec
Q 006518 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFA 307 (642)
Q Consensus 232 ~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg----l~~~~~~~d 307 (642)
-+.+++.+.+...+ +..++|.=+|.|..+..+++... ...|+++|.++.+++.++++- -.+.+...+
T Consensus 7 Vll~Evl~~L~~~~--------ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~n 77 (305)
T TIGR00006 7 VLLDEVVEGLNIKP--------DGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDN 77 (305)
T ss_pred hhHHHHHHhcCcCC--------CCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCC
Confidence 34445555554333 36899999999999999998732 378999999999999987652 134444444
Q ss_pred ccCCC-----CCCCCccEEEecc
Q 006518 308 SKQLP-----YPSLSFDMLHCAR 325 (642)
Q Consensus 308 a~~Lp-----fpd~SFDlV~~s~ 325 (642)
...+. ...+++|.|+...
T Consensus 78 F~~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 78 FANFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHHHHHHHhcCCCcccEEEEec
Confidence 43332 1234688887753
No 369
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=85.51 E-value=0.13 Score=45.71 Aligned_cols=97 Identities=24% Similarity=0.264 Sum_probs=54.1
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCCCchhhhhc-----ccc-------ccccccccccCCCCCCccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD-----RGF-------VGVLHDWCEAFPTYPRTYDLVHA 585 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~i~~-----RGl-------~g~~~~~ce~~~typrtydl~h~ 585 (642)
.|||++||.|.|+.++.+.. ..+++=++-....--+.. .|+ .|=+.+..+.++. ..||+|=+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~ 76 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG----AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVT 76 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC----TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE
T ss_pred EEEEcCcchHHHHHHHHHHC----CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEE
Confidence 69999999999999998632 223333332211111111 111 2223333334444 88999988
Q ss_pred ccccccccCCC--CCCCchhhhhhhccccCCCceeee
Q 006518 586 EGLLSLESGHR--HRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 586 ~~~~~~~~~~~--~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
+--|....... .+=....++-++.|+|||||.++.
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 77776432100 111345778899999999999875
No 370
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=85.40 E-value=0.15 Score=50.09 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=43.9
Q ss_pred ccccceechhhhhHHHHhhhhhccCCCccCCccccccCCCCccccCCch--hhhhhccccccccccCCCCcC
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNES--RNLALGYSNGDEVDRHCGQEL 163 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~~~~~y~pC~d~~--~~~~~~~~r~~~~er~C~~~~ 163 (642)
..||||.|+++|+.++..|..++..|. +++++.. +++.. .....+.++++.+++++...+
T Consensus 33 ~~~gyR~Y~~~dl~rL~~I~~lr~~G~---sL~eI~~-------ll~~~~~~~~~~L~~~~~~l~~ei~~L~ 94 (172)
T cd04790 33 SESNYRLYGERDLERLEQICAYRSAGV---SLEDIRS-------LLQQPGDDATDVLRRRLAELNREIQRLR 94 (172)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH-------HHhcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999998888 7777776 33321 122345566677777777643
No 371
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.30 E-value=0.44 Score=43.68 Aligned_cols=37 Identities=19% Similarity=0.643 Sum_probs=27.5
Q ss_pred CccEEEeccccccc-----cccH-HHHHHHHHhcccCCcEEEEE
Q 006518 317 SFDMLHCARCGVDW-----DQKD-GILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 317 SFDlV~~s~~ll~~-----~~d~-~~~L~Ei~RvLKPGG~Lvis 354 (642)
.||+|.|..+ .-| .++. ..+++.+.+.|+|||.|++.
T Consensus 1 ~yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4899999876 333 2222 46999999999999999995
No 372
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=85.30 E-value=0.65 Score=47.11 Aligned_cols=32 Identities=16% Similarity=-0.048 Sum_probs=25.6
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecC
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPT 548 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~ 548 (642)
..|||.+||.|-.|..|.+.+..|.-+=+.|+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~ 67 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI 67 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH
Confidence 48999999999999999987766655555544
No 373
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=85.08 E-value=0.051 Score=48.77 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=39.7
Q ss_pred cccccceechhhhhHHHHhhhhhccCCCccCCccccccCCCCccccCCchhhhhhccccccccccCCCC
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQ 161 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~~~~~y~pC~d~~~~~~~~~~r~~~~er~C~~ 161 (642)
...||||.|++.|+.++..|..+..-|. ++++... |++.........++.+.+++.+..
T Consensus 31 r~~~g~R~Y~~~dl~~l~~I~~l~~~G~---~l~ei~~-------~~~~~~~~~~l~~~~~~l~~~i~~ 89 (102)
T cd04775 31 RSEANYRLYSEADLSRLEKIVFLQAGGL---PLEEIAG-------CLAQPHVQAILEERLQSLNREIQR 89 (102)
T ss_pred CCCCCCeeeCHHHHHHHHHHHHHHHCCC---CHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999988888 6666665 333222233344455555555444
No 374
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=84.93 E-value=0.69 Score=48.93 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=57.8
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCc------------eEEeeccc---CCC--CCC
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPA------------MIGSFASK---QLP--YPS 315 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~------------~~~~~da~---~Lp--fpd 315 (642)
...+|||+|||.|.-.......+. .++...|.+.+.++.-.-..+.+ .+....-+ ++- +..
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 468999999999998888877652 55677788776652111000000 00000000 111 111
Q ss_pred -CCccEEEeccccccccccHHHH-HHHHHhcccCCcEEEEEe
Q 006518 316 -LSFDMLHCARCGVDWDQKDGIL-LLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 316 -~SFDlV~~s~~ll~~~~d~~~~-L~Ei~RvLKPGG~Lvis~ 355 (642)
..||+|.++...+. .+....+ .......++++|.++++.
T Consensus 194 ~~~ydlIlsSetiy~-~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 194 RTHYDLILSSETIYS-IDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccchhhhhhhhhhhC-cchhhhhHhhhhhhcCCccchhhhhh
Confidence 26899999887444 2333333 566777888899888753
No 375
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=84.62 E-value=7.2 Score=39.36 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=60.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEee-cccCC--------CCCCCCccEEEe
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSF-ASKQL--------PYPSLSFDMLHC 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~-da~~L--------pfpd~SFDlV~~ 323 (642)
+..+|||+||.+|+++....++-.+...|.|+|+-. ..--+|.. +..+ |+.+. ..|+...|+|++
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~Ga~--~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS 142 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEGAT--IIQGNDVTDPETYRKIFEALPNRPVDVVLS 142 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCCcc--cccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence 468999999999999999888754566788888732 11112221 1111 22211 136678999998
Q ss_pred ccccccc----cccHH-------HHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 324 ARCGVDW----DQKDG-------ILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 324 s~~ll~~----~~d~~-------~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
-.. ..- ..|.. .++.-....++|+|.|+.-.+....
T Consensus 143 DMa-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 143 DMA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred ccC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 532 111 01111 2344445668899999997765443
No 376
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.34 E-value=9.9 Score=38.79 Aligned_cols=98 Identities=18% Similarity=0.122 Sum_probs=65.8
Q ss_pred cCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHH----HHHHHcCCCceEEeecccCCC----CCCCCccEEEe
Q 006518 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV----QLTLERGLPAMIGSFASKQLP----YPSLSFDMLHC 323 (642)
Q Consensus 252 ~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml----~~A~ergl~~~~~~~da~~Lp----fpd~SFDlV~~ 323 (642)
..+.+||=+|+-+|+...++++-- ....+.+++.|+.+. ..|.+|. ++.-...|+. .| +-=+..|+|++
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~DA~-~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPMRELLDVAEKRP-NIIPILEDAR-KPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhHHHHHHHHHhCC-CceeeecccC-CcHHhhhhcccccEEEE
Confidence 456899999999999999998753 245689999997665 4555553 1211223432 33 11235899987
Q ss_pred ccccccccccH-HHHHHHHHhcccCCcEEEEEeC
Q 006518 324 ARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 324 s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
--+ .++. +.+..++..-||+||+++++.-
T Consensus 152 DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 152 DVA----QPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred ecC----CchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 633 2344 3477889999999998888754
No 377
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=84.05 E-value=2.5 Score=45.12 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------CCCceEEeecccCC--CCCCCCccEE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDML 321 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er---------gl~~~~~~~da~~L--pfpd~SFDlV 321 (642)
++++||=||-|.|.+....+++ -...++.-.|+....++..++- +..+.+..+|.-.+ ..+.+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 5689999999999999988877 3566778888888777766542 22344444443222 2446799999
Q ss_pred EeccccccccccH----HHHHHHHHhcccCCcEEEEEeC
Q 006518 322 HCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 322 ~~s~~ll~~~~d~----~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+.-.. -...+.. +.++..+.+.||+||+++...-
T Consensus 200 i~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 200 ITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 97644 2222222 3477889999999999998753
No 378
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=83.73 E-value=3 Score=43.87 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=49.2
Q ss_pred eEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCC--CCCccEEEecc
Q 006518 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP--SLSFDMLHCAR 325 (642)
Q Consensus 256 ~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfp--d~SFDlV~~s~ 325 (642)
+|+|+-||.|.++..+.+.|+. .+.++|.++..++..+.+... .+...|+..+... ...+|+++.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999999999888744 478899999998877665432 2444566555432 24699999864
No 379
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=83.72 E-value=2 Score=38.86 Aligned_cols=86 Identities=20% Similarity=0.250 Sum_probs=60.8
Q ss_pred CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----C-CCCCCccEEEeccccccccccHHH
Q 006518 263 GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARCGVDWDQKDGI 336 (642)
Q Consensus 263 GtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~L-----p-fpd~SFDlV~~s~~ll~~~~d~~~ 336 (642)
|.|.++..+++... ..|+++|.++.-++.+++.|....+. ....++ . .+.+.+|+|+-.-. ...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~-~~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVID-YSDDDFVEQIRELTGGRGVDVVIDCVG-------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEE-TTTSSHHHHHHHHTTTSSEEEEEESSS-------SHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhccccccc-ccccccccccccccccccceEEEEecC-------cHH
Confidence 46888888887742 67999999999999999988433322 111111 1 23357999975422 246
Q ss_pred HHHHHHhcccCCcEEEEEeCCC
Q 006518 337 LLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 337 ~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
.+.+...+|+|+|.+++.....
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8899999999999999987654
No 380
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=83.45 E-value=0.85 Score=46.46 Aligned_cols=125 Identities=19% Similarity=0.158 Sum_probs=58.3
Q ss_pred ccchhhhhhhHHHHHHHHHHhhcccccCCCCCCCCC---CCCCCCCCcceEEEecCcCchhhhhhhhccCCCcEEEEeec
Q 006518 471 PEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGD---EDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVP 547 (642)
Q Consensus 471 ~~~f~~d~~~w~~~v~~y~~~~~~~~~~~~~~~~~~---~~~~~~~~~~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p 547 (642)
.+.|++|-+.|..-=.-|.++... -|..|=| +-+. ....--.|-|||||-+-.|+++.+ +..|.-...|.
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~-----WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~-~~~V~SfDLva 103 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKK-----WPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN-KHKVHSFDLVA 103 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCT-----SSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S----EEEEESS-
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhc-----CCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc-CceEEEeeccC
Confidence 455777777776555555544321 0111111 0000 011234899999999999999853 33455555555
Q ss_pred CCCCCchhhhhccccccccccccccCCCCCCcccccccccccccccCCCCCCCchhhhhhhccccCCCceeeecc
Q 006518 548 TIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSP 622 (642)
Q Consensus 548 ~~~~~~l~~i~~RGl~g~~~~~ce~~~typrtydl~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~ 622 (642)
.... -++-|= ...|-=+-+.|.+=. .+|+-. =+..+.+.|-.|||||||.....-
T Consensus 104 ~n~~---Vtacdi----------a~vPL~~~svDv~Vf--cLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 104 PNPR---VTACDI----------ANVPLEDESVDVAVF--CLSLMG-----TNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp SSTT---EEES-T----------TS-S--TT-EEEEEE--ES---S-----S-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCC---EEEecC----------ccCcCCCCceeEEEE--EhhhhC-----CCcHHHHHHHHheeccCcEEEEEE
Confidence 4321 111111 111222266777522 344432 466799999999999999986543
No 381
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=83.11 E-value=2 Score=36.79 Aligned_cols=94 Identities=22% Similarity=0.219 Sum_probs=54.1
Q ss_pred EEecCcCchh--hhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc----c---cccccccccc-cCCCCC-Ccccccccc
Q 006518 519 VLDMNAHFGG--FNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G---FVGVLHDWCE-AFPTYP-RTYDLVHAE 586 (642)
Q Consensus 519 v~Dm~~~~g~--faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R----G---l~g~~~~~ce-~~~typ-rtydl~h~~ 586 (642)
++|.+||.|. +.+.+.. ....+.. ++.. ..+.....+ + +-.+..+... .++.-+ .+||++ ..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~--~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGG--RGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCC--CCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 9999999998 5555543 2223333 2222 122221111 1 1233334443 233333 389998 65
Q ss_pred cccccccCCCCCCCchhhhhhhccccCCCceeeeccCc
Q 006518 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIS 624 (642)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~ 624 (642)
.....+. . ...++-|+-|+|+|+|.++.+-..
T Consensus 126 ~~~~~~~---~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLL---P---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhcC---C---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 5444433 2 678999999999999998876554
No 382
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=83.07 E-value=1.4 Score=46.18 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=58.5
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCCCchhhhhccccccccccccccCCCCCCcccccccccccccccCCC
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 596 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~i~~RGl~g~~~~~ce~~~typrtydl~h~~~~~~~~~~~~ 596 (642)
-.|-|||||-+-.|..- ..+|--|-+|+++..-+.--|- ..|-=++|-|++-. .+|+..
T Consensus 182 ~vIaD~GCGEakiA~~~---~~kV~SfDL~a~~~~V~~cDm~-------------~vPl~d~svDvaV~--CLSLMg--- 240 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASSE---RHKVHSFDLVAVNERVIACDMR-------------NVPLEDESVDVAVF--CLSLMG--- 240 (325)
T ss_pred eEEEecccchhhhhhcc---ccceeeeeeecCCCceeecccc-------------CCcCccCcccEEEe--eHhhhc---
Confidence 36899999999888744 3578888888877642221111 13444588887532 455543
Q ss_pred CCCCchhhhhhhccccCCCceeeeccCc
Q 006518 597 HRCSTLDIFTEIDRILRPEVSKSNSPIS 624 (642)
Q Consensus 597 ~~c~~~~~~~e~dRilrP~g~~~~~~~~ 624 (642)
-++-+.+.|..|||+|||.+-..-|.
T Consensus 241 --tn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 241 --TNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred --ccHHHHHHHHHHHhccCceEEEEehh
Confidence 56779999999999999998765543
No 383
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=82.64 E-value=7.5 Score=44.74 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=64.9
Q ss_pred CCCeEEEECCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeeccc---------CCC----------
Q 006518 253 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---------QLP---------- 312 (642)
Q Consensus 253 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~---------~Lp---------- 312 (642)
.+.+|+=+|+|. |..+...++.- ...|+++|.+++-++.+++.|..........+ .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 568999999996 44555555541 23599999999999999887754221111000 010
Q ss_pred CCC--CCccEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 313 YPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 313 fpd--~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+.+ +.+|+|+.... ..-.+.+..+.+++.+.+||||.++....
T Consensus 242 ~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 36999998754 33223343346999999999999887654
No 384
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=82.61 E-value=1.1 Score=46.41 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=55.7
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----cccccccccccccCCC-CCCcccccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPT-YPRTYDLVHAEGLLS 590 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl~g~~~~~ce~~~t-yprtydl~h~~~~~~ 590 (642)
.+|+|++||+|.++-+|... .+- .+|+-++.. ..+...-+ -|+--+-.|+.+.++. +...||+|=++-=+.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~-~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAA-LDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 36999999999999888752 221 134444432 33332211 1321133455554432 234689886653322
Q ss_pred ccc------C----CCCCCC----------chhhhhhhccccCCCceeeecc
Q 006518 591 LES------G----HRHRCS----------TLDIFTEIDRILRPEVSKSNSP 622 (642)
Q Consensus 591 ~~~------~----~~~~c~----------~~~~~~e~dRilrP~g~~~~~~ 622 (642)
... . ...+.. +..++-...++|+|||.+++.-
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 100 0 000111 2377778889999999998753
No 385
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=82.22 E-value=1.2 Score=46.58 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=52.6
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcc-----c-----ccccc-ccccccCCCCCCccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----G-----FVGVL-HDWCEAFPTYPRTYDLV 583 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~R-----G-----l~g~~-~~~ce~~~typrtydl~ 583 (642)
-++||++|+|.|+++..++.. .++ .+|+-++.. +.+...-+. | -+-+. .|--+-....+++||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~-~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKH-KSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhC-CCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 358999999999999888752 222 233333322 111111110 0 01111 12212122346889998
Q ss_pred ccccccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 584 h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
=++... .... ...--....+-.+-|+|+|||.++..
T Consensus 150 i~D~~~-~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTD-PVGP-AETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCC-CCCc-ccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 665322 1110 01111235566788999999999976
No 386
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=81.76 E-value=0.58 Score=46.86 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=58.5
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-----CchhhhhccccccccccccccCCC----C-CCccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-----NHLPMILDRGFVGVLHDWCEAFPT----Y-PRTYDLVHAEG 587 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-----~~l~~i~~RGl~g~~~~~ce~~~t----y-prtydl~h~~~ 587 (642)
.++|+|||.|.|.+++... .|= .|++=++-. ..+.-+..+||-.+.--.+.+... . |.+.|-||.
T Consensus 20 l~lEIG~G~G~~l~~~A~~-~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i-- 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKR-NPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI-- 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHH-STT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE--
T ss_pred eEEEecCCCCHHHHHHHHH-CCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE--
Confidence 8999999999999999864 332 355555543 334456667875444444444321 1 467777765
Q ss_pred cc-ccccCCC--CCCCc-hhhhhhhccccCCCceeee
Q 006518 588 LL-SLESGHR--HRCST-LDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 588 ~~-~~~~~~~--~~c~~-~~~~~e~dRilrP~g~~~~ 620 (642)
.| +-|...+ +|-.+ ...|-++-|+|+|||.+..
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 34 2232111 24443 4788899999999998854
No 387
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=81.70 E-value=11 Score=37.01 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=71.2
Q ss_pred EECCCCchHHHHHhhcCCceeEEEE--ecCCHHHH----------HHHHHcCCCceEEeecccCCC----CCCCCccEEE
Q 006518 259 DIGCGYGSFGAHLFSKELLTMCIAN--YEASGSQV----------QLTLERGLPAMIGSFASKQLP----YPSLSFDMLH 322 (642)
Q Consensus 259 DIGCGtG~~a~~La~~g~~~~sV~g--iD~S~~ml----------~~A~ergl~~~~~~~da~~Lp----fpd~SFDlV~ 322 (642)
=||=|.=+|+..|++.......+++ .|..++.. +..++.|..+.+ ..|+..+. ...+.||.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEE
Confidence 3677777888888876322333444 45544333 233344655544 34666665 3568899999
Q ss_pred ecccccccc-----cc-------HHHHHHHHHhcccCCcEEEEEeCCCCchhhhhhHHhHhhhhhhhhhhhccceEEe
Q 006518 323 CARCGVDWD-----QK-------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 388 (642)
Q Consensus 323 ~s~~ll~~~-----~d-------~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~w~~l~~l~~~lcW~ll 388 (642)
-++-..... .+ ...+++...++|+++|.+.|+-..... ...|+- +.++++.++.+.
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------y~~W~i-~~lA~~~gl~l~ 148 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------YDSWNI-EELAAEAGLVLV 148 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------CccccH-HHHHHhcCCEEE
Confidence 986522100 01 124788899999999999998653321 345654 356666555554
No 388
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=81.62 E-value=11 Score=43.11 Aligned_cols=105 Identities=21% Similarity=0.195 Sum_probs=69.0
Q ss_pred CCeEEEECCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCC-----CCCCcc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPY-----PSLSFD 319 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g---~~~~sV~giD~S~~ml~~A~er----gl~--~~~~~~da~~Lpf-----pd~SFD 319 (642)
..+|.|-.||+|.+.....+.- .....++|.|.++.....|+.. |+. +.+...+...-|. ....||
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence 3589999999999876665431 1136799999999998888754 443 3444444444442 336799
Q ss_pred EEEeccccc--ccc---------------------ccH-HHHHHHHHhcccCCcEEEEEeCCC
Q 006518 320 MLHCARCGV--DWD---------------------QKD-GILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 320 lV~~s~~ll--~~~---------------------~d~-~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
.|+++.-+. .|. ... ..++..+...|+|||+..+..+..
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 999864321 111 011 357999999999999877776644
No 389
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.60 E-value=21 Score=36.81 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=73.8
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCce--EEeecccCCCCC-CCCccEEEecccc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IGSFASKQLPYP-SLSFDMLHCARCG 327 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~~--~~~~da~~Lpfp-d~SFDlV~~s~~l 327 (642)
.++.||||-.|.+..+|.+.+ ....+++.|+++.-++.|.+. ++.-. ...+|. -.++. +..+|.|+.++..
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred CceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCc
Confidence 459999999999999999886 456678899998888877543 33222 333443 12333 3479999887651
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCchhhhhhHHhHhhhhhhhhhhhccceEEeee
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~w~~l~~l~~~lcW~ll~~ 390 (642)
= .-....|.+-..-|+.==+|++. |+.+. ..++.++....|++..+
T Consensus 96 G---~lI~~ILee~~~~l~~~~rlILQ-Pn~~~-------------~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 96 G---TLIREILEEGKEKLKGVERLILQ-PNIHT-------------YELREWLSANSYEIKAE 141 (226)
T ss_pred H---HHHHHHHHHhhhhhcCcceEEEC-CCCCH-------------HHHHHHHHhCCceeeee
Confidence 1 11234666666666644456653 32221 23466777777877654
No 390
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=81.46 E-value=8 Score=40.54 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=59.3
Q ss_pred CCCeEEEECCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
...+||-+|+| .|..+..+++.. ...++.++.+++..+.+++.+....+.........-..+.+|+++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~----- 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV----- 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC-----
Confidence 34788888987 676666666652 2457788888888888876664322211110000001246898875422
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
....+.++.+.|+++|.++....
T Consensus 235 --~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 --SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred --cHHHHHHHHHhcccCCEEEEECC
Confidence 13467888999999999987643
No 391
>PRK11524 putative methyltransferase; Provisional
Probab=81.05 E-value=1.4 Score=46.49 Aligned_cols=52 Identities=23% Similarity=0.105 Sum_probs=33.8
Q ss_pred EEeecccCC--CCCCCCccEEEeccccc---c-------c-----cccHHHHHHHHHhcccCCcEEEEE
Q 006518 303 IGSFASKQL--PYPSLSFDMLHCARCGV---D-------W-----DQKDGILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 303 ~~~~da~~L--pfpd~SFDlV~~s~~ll---~-------~-----~~d~~~~L~Ei~RvLKPGG~Lvis 354 (642)
+.++|.... .+++++||+|++.--.. . + ..-....+.++.|+|||||.+++.
T Consensus 11 i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 11 IIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred EEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 444554443 35678899999863210 0 0 011135889999999999999985
No 392
>KOG2730 consensus Methylase [General function prediction only]
Probab=80.87 E-value=1.7 Score=44.66 Aligned_cols=90 Identities=16% Similarity=0.233 Sum_probs=59.4
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCC----CCCCCCccEEEe
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQL----PYPSLSFDMLHC 323 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~--~~~~~~da~~L----pfpd~SFDlV~~ 323 (642)
...|+|.-||.|..+..++.++. .|.++|+++.-+..|+++ |++ +.|.++|..++ -+....+|+|+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 46799999999999999998864 478899999888888765 443 55778876544 344444667776
Q ss_pred cccccccc--ccHHHHHHHHHhcccCCc
Q 006518 324 ARCGVDWD--QKDGILLLEVDRVLKPGG 349 (642)
Q Consensus 324 s~~ll~~~--~d~~~~L~Ei~RvLKPGG 349 (642)
+.- |. .....-+-.+...++|.|
T Consensus 172 spp---wggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPP---WGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCC---CCCcchhhhhhhhhhhhcchhH
Confidence 532 32 111233444555555544
No 393
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=80.83 E-value=1.1 Score=43.84 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=33.8
Q ss_pred CCCccEEEecccccccc----cc---H---HHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 315 SLSFDMLHCARCGVDWD----QK---D---GILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 315 d~SFDlV~~s~~ll~~~----~d---~---~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
.++||.+.|..+..|.. -| + .+++.++.++|||||.|+++.|.-.
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 35799998887643431 11 1 3689999999999999999999754
No 394
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=80.55 E-value=8.9 Score=42.48 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=65.8
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCc---eEEeecccCCC-CCCCCccEEEecc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPA---MIGSFASKQLP-YPSLSFDMLHCAR 325 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er----gl~~---~~~~~da~~Lp-fpd~SFDlV~~s~ 325 (642)
.-+|||.=+|+|.=+..++..-.....|+..|++++.++..+++ ++.. .+...|+..+= ...+.||+|=.--
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 35899999999998888887622356799999999999887654 4444 45555655543 2456899996431
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
.-.+..+|....+.+|.||++.++.-.
T Consensus 130 -----fGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 130 -----FGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp -----SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred -----CCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 133556999999999999999998653
No 395
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=80.42 E-value=6.4 Score=43.26 Aligned_cols=109 Identities=18% Similarity=0.248 Sum_probs=66.8
Q ss_pred cCCCeEEEECCCCchHHHHHhhcCCc---eeEEEEecCCHHHHHHHH---HcC--CCceEEeecccCCC---------CC
Q 006518 252 AGVRTILDIGCGYGSFGAHLFSKELL---TMCIANYEASGSQVQLTL---ERG--LPAMIGSFASKQLP---------YP 314 (642)
Q Consensus 252 ~~~~~VLDIGCGtG~~a~~La~~g~~---~~sV~giD~S~~ml~~A~---erg--l~~~~~~~da~~Lp---------fp 314 (642)
.++.+|||+-+.+|+=++.|.+.... ...+++.|.+..-+.... .+- ....+...++...| ..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 35689999999999999998886321 125888899876554432 221 11222222333222 23
Q ss_pred CCCccEEEecc-----cccc---------cc--------ccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 315 SLSFDMLHCAR-----CGVD---------WD--------QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 315 d~SFDlV~~s~-----~ll~---------~~--------~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
...||-|.|-- ..+. |. .-.-.+|..-.++||+||.+|.|+-..+.
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 44699999721 1011 11 11124788889999999999999865443
No 396
>PHA01634 hypothetical protein
Probab=80.38 E-value=3.4 Score=39.13 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=47.1
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCc-eEE--eecccCCCCCCCCccEEEe
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPA-MIG--SFASKQLPYPSLSFDMLHC 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~-~~~--~~da~~Lpfpd~SFDlV~~ 323 (642)
..++|+|||++.|..+.+++-+|. -.|++++.++...+..++. +.. .+. ......++-.-+.||+...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een-~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEV-CAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHH-hhhheeeeceeecccccccCCCcceEEE
Confidence 458999999999999999998874 4689999999998888663 221 110 0112234434456887764
No 397
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=80.30 E-value=10 Score=40.46 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=58.6
Q ss_pred CCCeEEEECCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
.+.+||=.|+| .|.++..+++.. ...++.++.+++-.+.+++.|....+. .... ..+.+|+++-...
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~----- 232 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGAASAGG---AYDT--PPEPLDAAILFAP----- 232 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCCceecc---cccc--CcccceEEEECCC-----
Confidence 35789999975 444555566542 235778888888899998888644321 1111 1235887654322
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
. ...+.+..+.|++||.+++...
T Consensus 233 -~-~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 -A-GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -c-HHHHHHHHHhhCCCcEEEEEec
Confidence 1 2478888899999999988764
No 398
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.00 E-value=10 Score=41.26 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=65.7
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC---------CCCCCCccEEEe
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---------PYPSLSFDMLHC 323 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~L---------pfpd~SFDlV~~ 323 (642)
.+.+||=+|+|+=.+...+..+.+-...|+.+|.++.-++.|++-|..+..-....... -+....||..+-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d 248 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFD 248 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEE
Confidence 45899999999644444444443445679999999999999999776554322221101 123345888875
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
... .+..++.....+|+||.+++...+..
T Consensus 249 CsG-------~~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 249 CSG-------AEVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred ccC-------chHHHHHHHHHhccCCEEEEeccCCC
Confidence 433 23455666788999999999887643
No 399
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=79.90 E-value=5.5 Score=40.27 Aligned_cols=107 Identities=8% Similarity=-0.032 Sum_probs=70.0
Q ss_pred CCCeEEEECCCCchHHHHHhhc---CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCC-------CCCCccEEE
Q 006518 253 GVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY-------PSLSFDMLH 322 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~---g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpf-------pd~SFDlV~ 322 (642)
+++.|+|+|.-.|..+..++.. ..+...|.++|++-..++.+..+-..+.+..++..+... ..+.--+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 4589999999999877776653 225578899999876666555444556666666554421 111113333
Q ss_pred eccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006518 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (642)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (642)
|..+ -|..+..-+.|+-..++|..|-|+++-+-+.+.
T Consensus 149 ilDs-dHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 149 ILDS-DHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred EecC-CchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 4444 454545556677788999999999998876554
No 400
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=79.90 E-value=10 Score=37.76 Aligned_cols=93 Identities=24% Similarity=0.214 Sum_probs=60.9
Q ss_pred CCCeEEEECCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-------CCCCCCccEEEec
Q 006518 253 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-------PYPSLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~L-------pfpd~SFDlV~~s 324 (642)
...+||.+|+|. |..+..+++.. ...++.++.+++..+.+++.+....+ +.... ....+.||+|+..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 457899999985 66666676652 25688889988888888776532221 11111 1124579999865
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
.. ....+..+.+.|+++|.++.....
T Consensus 209 ~~-------~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 209 VG-------GPETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CC-------CHHHHHHHHHhcccCCEEEEEccC
Confidence 32 114567788899999999976543
No 401
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=79.37 E-value=1.2 Score=42.79 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=35.3
Q ss_pred cccCCCCCCcccccccccccccccCCCCCCCchhhhhhhccccCCCceeeeccCc
Q 006518 570 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPIS 624 (642)
Q Consensus 570 ce~~~typrtydl~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~ 624 (642)
++.+|.-+.+||+|=+...+..+ -+...+|-||-|+|+|||.++..-++
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~------~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNV------VDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcC------CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 45566545799999776555433 24568899999999999999854443
No 402
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=79.09 E-value=32 Score=35.92 Aligned_cols=123 Identities=17% Similarity=0.161 Sum_probs=62.4
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHH----HHHcCCCceEEeecccCCCCC---CCCccEEEecc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYP---SLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~----A~ergl~~~~~~~da~~Lpfp---d~SFDlV~~s~ 325 (642)
.+++||=||=..-...+..+. + ...+|+.+|+.+..+++ |.+.|+++.....|.. -|+| -++||++++.-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~-~-~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR-~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALT-G-LPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLR-DPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHH-T---SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TT-S---TTTSS-BSEEEE--
T ss_pred cCCEEEEEcCCcHHHHHHHhh-C-CCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccc-ccCCHHHhcCCCEEEeCC
Confidence 458999999665533222222 2 24679999999999864 5567888877777753 3444 36899999875
Q ss_pred ccccccccHHHHHHHHHhcccCCc-EEEEEeCCCCchhhhhhHHhHhhhhhhhhhhhccceEEe
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGG-YFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 388 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG-~Lvis~p~~~~~~~lr~~e~~~~w~~l~~l~~~lcW~ll 388 (642)
. +. .+-...++..-...||..| ..+++--... .....|..++.....++.-+.
T Consensus 121 P-yT-~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~--------~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 121 P-YT-PEGLKLFLSRGIEALKGEGCAGYFGFTHKE--------ASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp --SS-HHHHHHHHHHHHHTB-STT-EEEEEE-TTT----------HHHHHHHHHHHHTS--EEE
T ss_pred C-CC-HHHHHHHHHHHHHHhCCCCceEEEEEecCc--------CcHHHHHHHHHHHHHCCcCHH
Confidence 4 22 1223458888888998766 4444322111 123567777777777776544
No 403
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=78.98 E-value=1.1 Score=45.54 Aligned_cols=91 Identities=14% Similarity=0.055 Sum_probs=52.5
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchh-hhhcccccccc--------------ccccccCCCC---C-
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP-MILDRGFVGVL--------------HDWCEAFPTY---P- 577 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~-~i~~RGl~g~~--------------~~~ce~~~ty---p- 577 (642)
.|||.+||.|--|..|.+.+. +|+-++-. .-+. ..-++|+-... +-++.-+..+ +
T Consensus 40 rvL~~gCG~G~da~~LA~~G~-----~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH-----EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC-----eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 799999999999999998654 45555543 2222 23456653221 1122222211 1
Q ss_pred CcccccccccccccccCCCCCCCchhhhhhhccccCCCce
Q 006518 578 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVS 617 (642)
Q Consensus 578 rtydl~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~ 617 (642)
-+||+|-...+|.+.. ...-..++-.|-++|+|||.
T Consensus 115 ~~fd~v~D~~~~~~l~----~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 115 ADVDAVYDRAALIALP----EEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred CCeeEEEehHhHhhCC----HHHHHHHHHHHHHHcCCCCe
Confidence 2456655544444331 12234778899999999986
No 404
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=78.98 E-value=9.9 Score=40.07 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=58.8
Q ss_pred CCCeEEEECCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeec---ccCCCCCCCCccEEEecccc
Q 006518 253 GVRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFA---SKQLPYPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCGt-G~~a~~La~~-g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~d---a~~Lpfpd~SFDlV~~s~~l 327 (642)
+..+||-.|+|. |..+..+++. |+ ..+++++.++...+.+++.+....+ ... ...+....+.||+|+....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~--~~v~~~~~s~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~~vd~vld~~g- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA--AEIVATDLADAPLAVARAMGADETV-NLARDPLAAYAADKGDFDVVFEASG- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHcCCCEEE-cCCchhhhhhhccCCCccEEEECCC-
Confidence 347888888874 5666666654 32 1477888888888877776653222 111 1112212235899986532
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEe
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
....+.++.+.|+++|.++...
T Consensus 241 ------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 ------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1346788899999999998754
No 405
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=78.83 E-value=0.32 Score=43.19 Aligned_cols=33 Identities=18% Similarity=0.042 Sum_probs=27.5
Q ss_pred cccceechhhhhHHHHhhhhhccCCCccCCcccccc
Q 006518 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (642)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~ 130 (642)
.||||.|+++|+.++..|..+..-|. ++++...
T Consensus 33 ~~gyR~Y~~~~~~~l~~I~~lr~~G~---~l~eI~~ 65 (97)
T cd04782 33 ENGYRYYTLEQFEQLDIILLLKELGI---SLKEIKD 65 (97)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 49999999999999999999988777 5555443
No 406
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=78.82 E-value=1.6 Score=47.25 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=16.9
Q ss_pred eEEEecCcCchhhhhhhhc
Q 006518 517 RNVLDMNAHFGGFNSALLE 535 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~ 535 (642)
..|+|++||.|.+++.|.+
T Consensus 82 ~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CEEEEEeCCccHHHHHHHH
Confidence 3799999999999998875
No 407
>PRK10742 putative methyltransferase; Provisional
Probab=78.79 E-value=8.5 Score=40.28 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=52.6
Q ss_pred HHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH---Hc-------CC----C
Q 006518 235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL---ER-------GL----P 300 (642)
Q Consensus 235 ~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~---er-------gl----~ 300 (642)
+.+.+.+....+ ..-+|||.=+|.|..+..++.+|.. |+.+|-++......+ ++ +. +
T Consensus 76 ~~l~kAvglk~g------~~p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~r 146 (250)
T PRK10742 76 EAVAKAVGIKGD------YLPDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQER 146 (250)
T ss_pred cHHHHHhCCCCC------CCCEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhce
Confidence 355666655444 1128999999999999999999743 899999987764332 22 11 1
Q ss_pred ceEEeecccCC-CCCCCCccEEEeccc
Q 006518 301 AMIGSFASKQL-PYPSLSFDMLHCARC 326 (642)
Q Consensus 301 ~~~~~~da~~L-pfpd~SFDlV~~s~~ 326 (642)
..+...+.... .-...+||+|+.--.
T Consensus 147 i~l~~~da~~~L~~~~~~fDVVYlDPM 173 (250)
T PRK10742 147 LQLIHASSLTALTDITPRPQVVYLDPM 173 (250)
T ss_pred EEEEeCcHHHHHhhCCCCCcEEEECCC
Confidence 23344443222 212337999998765
No 408
>PRK01581 speE spermidine synthase; Validated
Probab=78.58 E-value=1.5 Score=48.18 Aligned_cols=103 Identities=16% Similarity=0.085 Sum_probs=54.6
Q ss_pred cceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc--------cc-c-----ccccccccccCCCCCCc
Q 006518 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD--------RG-F-----VGVLHDWCEAFPTYPRT 579 (642)
Q Consensus 515 ~~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~--------RG-l-----~g~~~~~ce~~~typrt 579 (642)
.-++||++|+|.|+.+..+++. .++ .+|+-++-. .-+.+.-+ +| + --++.|--+-...-+++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v--~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETV--LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCC--CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 3579999999999988888752 222 233333322 22222111 11 1 01122222222333578
Q ss_pred ccccccccccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 580 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 580 ydl~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
||+|=++- .+.......+---..++-.+-|.|+|||.++..
T Consensus 227 YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 227 YDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99998762 221110001111235777889999999998775
No 409
>PRK13749 transcriptional regulator MerD; Provisional
Probab=78.49 E-value=1.1 Score=41.82 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=27.8
Q ss_pred cccceechhhhhHHHHhhhhhccCCCccCCcccccc
Q 006518 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (642)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~ 130 (642)
.||||.|+++++++|..|..+..-|. ++++...
T Consensus 36 ~~gyR~Y~~~~l~rL~~I~~~r~~G~---sL~eI~~ 68 (121)
T PRK13749 36 TGGYGLFDDAALQRLCFVRAAFEAGI---GLDALAR 68 (121)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 49999999999999999998777677 6666654
No 410
>COG0789 SoxR Predicted transcriptional regulators [Transcription]
Probab=78.37 E-value=1.1 Score=40.87 Aligned_cols=32 Identities=22% Similarity=0.081 Sum_probs=27.3
Q ss_pred ccceechhhhhHHHHhhhhhccCCCccCCcccccc
Q 006518 96 HGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (642)
Q Consensus 96 ~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~ 130 (642)
||||.|+++|++++..|..+..-|. +++++..
T Consensus 34 ~gyR~Ys~~dl~~l~~I~~~r~~G~---~L~~I~~ 65 (124)
T COG0789 34 GGYRYYTPEDLELLQIIKTLRELGF---SLAEIKE 65 (124)
T ss_pred CCceecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 8999999999999999999885456 6777765
No 411
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=77.80 E-value=0.72 Score=47.40 Aligned_cols=34 Identities=3% Similarity=0.018 Sum_probs=25.0
Q ss_pred CcccccccccccccccCCCCCCCchhhhhhhccccCCCceeee
Q 006518 578 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 578 rtydl~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
.+||+|..+.-=..|. +++-++=|.|||||.++.
T Consensus 143 ~~fD~VfiDa~k~~y~---------~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 143 PEFDFAFVDADKPNYV---------HFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCEEEECCCHHHHH---------HHHHHHHHhcCCCeEEEE
Confidence 5899998754433333 566677899999999984
No 412
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=76.86 E-value=1.2 Score=41.82 Aligned_cols=35 Identities=26% Similarity=0.115 Sum_probs=29.5
Q ss_pred cccccceechhhhhHHHHhhhhhccCCCccCCcccccc
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~ 130 (642)
...||||.|+++++.++..|+.++.-|. ++++...
T Consensus 31 ~~~~gyR~Y~~~~~~~l~~I~~lr~~G~---sL~eI~~ 65 (133)
T cd04787 31 DPVNGYRLYSEKDLSRLRFILSARQLGF---SLKDIKE 65 (133)
T ss_pred CCCCCeeeCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 3359999999999999999999998888 6666553
No 413
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=76.76 E-value=15 Score=38.55 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=58.8
Q ss_pred CCCeEEEECCC-CchHHHHHhhcCCceeE-EEEecCCHHHHHHHHHcCCCceEEeecccCC----CCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFASKQL----PYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~g~~~~s-V~giD~S~~ml~~A~ergl~~~~~~~da~~L----pfpd~SFDlV~~s~~ 326 (642)
.+.+||-+|+| .|..+..+++.. ... +..++.+++..+.+++.+... +...+.... ....+.+|+|+....
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~vd~v~~~~~ 235 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKKLGATE-TVDPSREDPEAQKEDNPYGFDVVIEATG 235 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCCeE-EecCCCCCHHHHHHhcCCCCcEEEECCC
Confidence 44789999865 355555566552 222 677788888888887777542 221111110 113456999986522
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
....+.++.+.|+++|.++....
T Consensus 236 -------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 -------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEec
Confidence 13578888999999999987654
No 414
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=76.55 E-value=1.7 Score=44.78 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=18.1
Q ss_pred ceEEEecCcCchhhhhhhhc
Q 006518 516 VRNVLDMNAHFGGFNSALLE 535 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~ 535 (642)
=.+|||+|||+|+|+-.|++
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~ 95 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQ 95 (228)
T ss_pred CCEEEEcccCCCHHHHHHHH
Confidence 35899999999999999987
No 415
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=76.29 E-value=1.5 Score=40.73 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=28.3
Q ss_pred ccccceechhhhhHHHHhhhhhccCCCccCCccccc
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~ 129 (642)
..||||.|++.++.+|..|..+...|. ++++..
T Consensus 35 ~~~gyR~Y~~~~l~rL~~I~~lr~~G~---~L~eI~ 67 (120)
T TIGR02054 35 TTSGYGIFDDASLQRLRFVRAAFEAGI---GLGELA 67 (120)
T ss_pred CCCCCeeCCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 349999999999999999999988888 565554
No 416
>PRK00811 spermidine synthase; Provisional
Probab=75.87 E-value=2.6 Score=44.61 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=53.2
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc------ccc-----cc-ccccccccCCCCCCcccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD------RGF-----VG-VLHDWCEAFPTYPRTYDL 582 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~------RGl-----~g-~~~~~ce~~~typrtydl 582 (642)
-++|||+|||.|+++..+++. .++- +|+-++-. ..+.++-+ .|+ +- +..|--+-+.+-+.+||+
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~-~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKH-PSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCEEEEEecCchHHHHHHHcC-CCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 578999999999999988752 2333 33333322 22221111 011 11 112211112333578999
Q ss_pred cccccccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 583 ~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
|=++. ++.+.. ...---..++-++-|+|+|||.++..
T Consensus 154 Ii~D~-~dp~~~-~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDS-TDPVGP-AEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECC-CCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 96642 222210 00001135667889999999999973
No 417
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=75.45 E-value=8 Score=44.51 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=62.0
Q ss_pred CCCeEEEECCCCc-hHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC---------------------
Q 006518 253 GVRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ--------------------- 310 (642)
Q Consensus 253 ~~~~VLDIGCGtG-~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~--------------------- 310 (642)
++.+||=+|+|.- ..+..++..- ...|+.+|.+++.++.+++.|... ...+...
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~~--v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAEF--LELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeE--EeccccccccccccceeecCHHHHHHHH
Confidence 4579999999965 5555555441 234888999999888887755432 2122100
Q ss_pred --CCCCCCCccEEEeccccccccccHHHHHHHHHhcccCCcEEE
Q 006518 311 --LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 352 (642)
Q Consensus 311 --Lpfpd~SFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lv 352 (642)
++-.-..+|+|+..-. +.-.+.|.-..+++.+.+|||+.++
T Consensus 239 ~~~~e~~~~~DIVI~Tal-ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTAL-IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHhCCCCEEEECcc-cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1111246999987743 5544555568889999999999877
No 418
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=75.16 E-value=1.5 Score=38.87 Aligned_cols=33 Identities=21% Similarity=0.013 Sum_probs=27.9
Q ss_pred cccceechhhhhHHHHhhhhhccCCCccCCcccccc
Q 006518 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (642)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~ 130 (642)
.||||.|+++++.++..|+.+..-|. ++++-..
T Consensus 33 ~~gyR~Y~~~~l~~l~~I~~lr~~G~---~l~~I~~ 65 (96)
T cd04768 33 ENGYRYYSYAQLYQLQFILFLRELGF---SLAEIKE 65 (96)
T ss_pred CCCeeeCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 58999999999999999999988888 5555443
No 419
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=74.59 E-value=4.9 Score=45.06 Aligned_cols=65 Identities=22% Similarity=0.216 Sum_probs=46.6
Q ss_pred cchhhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 006518 228 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (642)
Q Consensus 228 d~~~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e 296 (642)
++...|..-+...+..... ....+..-|||||.|||.++...+..|.. .+++++.-..|.+.|++
T Consensus 43 dRNiky~~gi~~tIte~kh--~~~~gkv~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 43 DRNIKYRLGIEKTITEPKH--VLDIGKVFVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARK 107 (636)
T ss_pred cccHHHHHHHHHHhcccce--eccCceEEEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHH
Confidence 4556676677766654433 11112346999999999999888887743 58999999999988864
No 420
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=74.50 E-value=1.9 Score=39.15 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=27.4
Q ss_pred cccccceechhhhhHHHHhhhhhccCCCccCCccccc
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~ 129 (642)
...||||.|++.+++++..|..+...|. ++++..
T Consensus 31 r~~~g~R~Y~~~~l~~l~~I~~lr~~G~---~l~~I~ 64 (107)
T cd01111 31 RTEGGYGLFDDCALQRLRFVRAAFEAGI---GLDELA 64 (107)
T ss_pred cCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 3459999999999999999999887667 455444
No 421
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=74.47 E-value=13 Score=39.88 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=57.9
Q ss_pred CCCeEEEECCC-CchHHHHHhhcCCceeEEEEecC---CHHHHHHHHHcCCCceEEeecccCC--CCCCCCccEEEeccc
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEA---SGSQVQLTLERGLPAMIGSFASKQL--PYPSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~giD~---S~~ml~~A~ergl~~~~~~~da~~L--pfpd~SFDlV~~s~~ 326 (642)
.+.+||=+|+| .|.++..+++.. ...+++++. ++.-++.+++.|... .....+.. ....+.||+|+-...
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC
Confidence 34788988987 466677776652 224667765 677788888777542 11111110 001245898876532
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
....+.+..++|++||.+++...
T Consensus 248 -------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 -------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred -------CHHHHHHHHHHccCCcEEEEEec
Confidence 12377888999999999987654
No 422
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=74.03 E-value=1.6 Score=40.47 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=26.9
Q ss_pred cccceechhhhhHHHHhhhhhccCCCccCCccccc
Q 006518 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (642)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~ 129 (642)
.||||.|+++++.++..|..+..-|. ++++..
T Consensus 33 ~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 64 (127)
T cd04784 33 ANNYRLYDEEHLERLLFIRRCRSLDM---SLDEIR 64 (127)
T ss_pred CCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 59999999999999999998887777 555554
No 423
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=73.60 E-value=15 Score=39.40 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=56.7
Q ss_pred CCCeEEEECCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
...+||=+||| .|.++..++++-.....++++|.+++-++.+++-+. .... ..+. .+..||+|+-.-. .
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~--~~~~---~~~~-~~~g~d~viD~~G----~ 232 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE--TYLI---DDIP-EDLAVDHAFECVG----G 232 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc--eeeh---hhhh-hccCCcEEEECCC----C
Confidence 35789999986 445555655531112357888999888888865332 1111 1111 1124898875422 0
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
......+.+..++|++||.+++...
T Consensus 233 ~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 233 RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred CccHHHHHHHHHhCcCCcEEEEEee
Confidence 1123578889999999999987654
No 424
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.59 E-value=6.2 Score=40.92 Aligned_cols=97 Identities=20% Similarity=0.149 Sum_probs=59.2
Q ss_pred CCeEEEECCCCchHHHHHhhcCCc--------eeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCC
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELL--------TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLS 317 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~--------~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~S 317 (642)
..+|+|+-+.+|+++..|.++-+. ...|+++|..+ |.- -. .+...++|++... |..+.
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-MaP---I~--GV~qlq~DIT~~stae~Ii~hfggek 115 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MAP---IE--GVIQLQGDITSASTAEAIIEHFGGEK 115 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CCc---cC--ceEEeecccCCHhHHHHHHHHhCCCC
Confidence 578999999999999999876221 11267777643 210 01 1223445544432 56668
Q ss_pred ccEEEeccc----cccccccH------HHHHHHHHhcccCCcEEEEEeC
Q 006518 318 FDMLHCARC----GVDWDQKD------GILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 318 FDlV~~s~~----ll~~~~d~------~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
-|+|+|-.+ .+|-.+.- ..+|.-...+|||||.|+--.+
T Consensus 116 AdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 116 ADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred ccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 999999653 12222111 1356677889999999986433
No 425
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=73.27 E-value=2.1 Score=39.76 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=24.9
Q ss_pred cccccceechhhhhHHHHhhhhhccCCC
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSS 120 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~ 120 (642)
...||||.|+++++.++..|+.++.-|.
T Consensus 31 r~~~gyR~Y~~~~l~~l~~I~~lr~~G~ 58 (127)
T TIGR02044 31 RSEGGYRTYTQQHLDELRLISRARQVGF 58 (127)
T ss_pred cCCCCCeecCHHHHHHHHHHHHHHHCCC
Confidence 3469999999999999999999887777
No 426
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=73.18 E-value=1.4 Score=43.15 Aligned_cols=98 Identities=22% Similarity=0.247 Sum_probs=53.7
Q ss_pred cceEEEecCcCch--hhhhhhhccCCCcEEEEeecCCCCCchhh---hhcc------c-cccccccccccC--CC-CCCc
Q 006518 515 MVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGTNHLPM---ILDR------G-FVGVLHDWCEAF--PT-YPRT 579 (642)
Q Consensus 515 ~~rnv~Dm~~~~g--~faa~l~~~~~~vwvmnv~p~~~~~~l~~---i~~R------G-l~g~~~~~ce~~--~t-yprt 579 (642)
.-++||+.|||.| |.+||... ....|+-+|.+..++. -.++ + +--.-+||-+.. .. -++.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-----~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-----GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT------T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred CCceEEEECCccchhHHHHHhcc-----CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 4579999999988 78777761 1134555665544331 1111 1 234556898754 11 1478
Q ss_pred ccccccccccccccCCCCCCCchhhhhhhccccCCCceeeeccC
Q 006518 580 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPI 623 (642)
Q Consensus 580 ydl~h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~ 623 (642)
||+|-|+-++=.. -..+.++-=++++|.|+|.++++-.
T Consensus 120 ~D~IlasDv~Y~~------~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 120 FDVILASDVLYDE------ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp BSEEEEES--S-G------GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred CCEEEEecccchH------HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999997766422 2344666668999999999776643
No 427
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=73.12 E-value=18 Score=38.78 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=59.1
Q ss_pred CCCeEEEECCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----C-CCCCCccEEEecc
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~L-----p-fpd~SFDlV~~s~ 325 (642)
...+||=+|+| .|..+..+++.. -...|+++|.+++..+.+++.|....+. ...... . .....+|+|+-..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGATHTVN-SSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCceEEc-CCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 35788988875 355566666542 1124788899999999998877533221 111111 0 1223589887542
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
. . ...+.+..+.|++||.+++...
T Consensus 254 g------~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 254 G------R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred C------C-HHHHHHHHHHhccCCEEEEECC
Confidence 2 1 2467778889999999998654
No 428
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=72.35 E-value=1.8 Score=39.38 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=28.2
Q ss_pred cccccceechhhhhHHHHhhhhhccCCCccCCccccc
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~ 129 (642)
...||||.|++.++.++..|..+..-|. ++++..
T Consensus 30 r~~~g~R~Y~~~~~~~l~~I~~lr~~G~---sl~eI~ 63 (112)
T cd01282 30 RSANGYRDYDEAAVDRVRQIRRLLAAGL---TLEEIR 63 (112)
T ss_pred cCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 3469999999999999999999987777 555544
No 429
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=72.23 E-value=2.1 Score=40.43 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.1
Q ss_pred cccccceechhhhhHHHHhhhhhccCCC
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSS 120 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~ 120 (642)
...||||.|+++++.++..|..+..-|.
T Consensus 31 r~~~gyR~Y~~~~l~~l~~I~~lr~~G~ 58 (135)
T PRK10227 31 RSENGYRTYTQQHLNELTLLRQARQVGF 58 (135)
T ss_pred cCCCCcccCCHHHHHHHHHHHHHHHCCC
Confidence 3569999999999999999999866556
No 430
>cd01105 HTH_GlnR-like Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=71.53 E-value=2 Score=37.45 Aligned_cols=32 Identities=25% Similarity=0.136 Sum_probs=27.0
Q ss_pred ccceechhhhhHHHHhhhhhccCCCccCCcccccc
Q 006518 96 HGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (642)
Q Consensus 96 ~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~ 130 (642)
||||+|++.|+..+..|..|...|. ++++...
T Consensus 35 ~g~R~Ys~~dv~~l~~I~~Lr~~G~---sl~~i~~ 66 (88)
T cd01105 35 GGQRKYSLADVDRLLVIKELLDEGF---TLAAAVE 66 (88)
T ss_pred CCceecCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 7999999999999999999988877 5555443
No 431
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=71.50 E-value=1.9 Score=40.19 Aligned_cols=32 Identities=19% Similarity=-0.008 Sum_probs=26.9
Q ss_pred cccceechhhhhHHHHhhhhhccCCCccCCccccc
Q 006518 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (642)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~ 129 (642)
-||||.|++.++.++..|..+..-|. ++++-.
T Consensus 33 ~~gyR~Y~~~~l~~l~~I~~lr~lG~---sL~eI~ 64 (127)
T TIGR02047 33 DNNYRVYTVGHVERLAFIRNCRTLDM---SLAEIR 64 (127)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 48999999999999999999988777 455444
No 432
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=71.38 E-value=11 Score=37.04 Aligned_cols=41 Identities=12% Similarity=0.009 Sum_probs=32.6
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~e 296 (642)
.+..|||.=||+|+.+....+.+ -...|+|+++...+.|.+
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 45899999999999988887765 348899999999998864
No 433
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=71.13 E-value=2.1 Score=40.70 Aligned_cols=28 Identities=11% Similarity=-0.077 Sum_probs=25.2
Q ss_pred cccccceechhhhhHHHHhhhhhccCCC
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSS 120 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~ 120 (642)
...||||+|+++|+.++..|..++..|.
T Consensus 31 r~~~g~R~Y~~~dl~~l~~I~~lr~~G~ 58 (139)
T cd01110 31 RNAGNQRRYPRDVLRRIAFIKVAQRLGL 58 (139)
T ss_pred cCCCCCeEECHHHHHHHHHHHHHHHcCC
Confidence 3468999999999999999999988887
No 434
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=71.13 E-value=23 Score=37.18 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=64.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCH----HHHHHHHHcCCCceEEeecccCCCCC----CCCccEEEec
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG----SQVQLTLERGLPAMIGSFASKQLPYP----SLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~----~ml~~A~ergl~~~~~~~da~~Lpfp----d~SFDlV~~s 324 (642)
+..+||=+|++.|..-.+..+---+..-|++++.|+ +.+..|++|- ++.-+.-|+ +.|.. -.-.|+|++-
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt-NiiPIiEDA-rhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT-NIIPIIEDA-RHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC-CceeeeccC-CCchheeeeeeeEEEEecc
Confidence 568999999999999888877644555688888863 4456676663 222122232 23321 1256777765
Q ss_pred cccccccccHH-HHHHHHHhcccCCcEEEEEeCCC
Q 006518 325 RCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 325 ~~ll~~~~d~~-~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
-. .++.. .+..+..-.||+||.|+++....
T Consensus 234 va----qpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 234 VA----QPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred CC----CchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 22 23333 35667888999999999987544
No 435
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=71.01 E-value=2.5 Score=39.34 Aligned_cols=27 Identities=19% Similarity=0.115 Sum_probs=24.4
Q ss_pred ccccceechhhhhHHHHhhhhhccCCC
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLGSS 120 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g~~ 120 (642)
..||||.|+++++.++..|..+..-|.
T Consensus 32 ~~~g~R~Y~~~~~~~l~~I~~lr~~G~ 58 (127)
T cd01108 32 SDNGYRVYNQRDIEELRFIRRARDLGF 58 (127)
T ss_pred CCCCceecCHHHHHHHHHHHHHHHcCC
Confidence 359999999999999999999887777
No 436
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=70.91 E-value=35 Score=35.81 Aligned_cols=93 Identities=15% Similarity=0.081 Sum_probs=60.1
Q ss_pred CCCeEEEECC--CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----CCCCCCccEEEecc
Q 006518 253 GVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGC--GtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~L-----pfpd~SFDlV~~s~ 325 (642)
++.+||=.|. |.|.++..+++.. ...+++++.+++..+.+++.|....+..-+...+ ....+.+|+|+-..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 3478888884 5788888888762 2457788888888888887775333221110011 01234689887542
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEe
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
. ...+.+..+.|+++|.++...
T Consensus 216 G--------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 216 G--------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred C--------HHHHHHHHHHhCcCcEEEEec
Confidence 1 235678899999999999754
No 437
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=70.79 E-value=1.1 Score=40.57 Aligned_cols=33 Identities=24% Similarity=0.142 Sum_probs=27.8
Q ss_pred cccceechhhhhHHHHhhhhhccCCCccCCcccccc
Q 006518 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (642)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~ 130 (642)
.||||.|+++++.++..|..+..-|. ++++...
T Consensus 34 ~ngyR~Y~~~~i~~l~~I~~lr~~G~---sl~~i~~ 66 (108)
T cd01107 34 DTGYRYYSAEQLERLNRIKYLRDLGF---PLEEIKE 66 (108)
T ss_pred CCCccccCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 58999999999999999999988777 5555544
No 438
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=70.69 E-value=17 Score=38.40 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=57.3
Q ss_pred CCeEEEECCC-CchHHHHHhhcCCceeE-EEEecCCHHHHHHHHHcCCCceEEeec--ccCC-CC-CCCCccEEEecccc
Q 006518 254 VRTILDIGCG-YGSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFA--SKQL-PY-PSLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCG-tG~~a~~La~~g~~~~s-V~giD~S~~ml~~A~ergl~~~~~~~d--a~~L-pf-pd~SFDlV~~s~~l 327 (642)
+.+||=+|+| .|.++..+++.. ..+ ++.++.+++..+.+++.|....+..-+ .+.+ .. ....||+|+-...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g- 240 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC-
Confidence 4788888875 344555555542 233 778899999899988877533221111 0011 11 2336999985422
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
....+.+..+.|+++|.+++...
T Consensus 241 ------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 ------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 12356777889999999987654
No 439
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=70.48 E-value=16 Score=41.36 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=65.3
Q ss_pred CCCeEEEECCCCch--HHHHHhhcCCceeEEEEecCCHHHHHHHHHc--C---C-CceE--EeecccCCCCCCC-CccEE
Q 006518 253 GVRTILDIGCGYGS--FGAHLFSKELLTMCIANYEASGSQVQLTLER--G---L-PAMI--GSFASKQLPYPSL-SFDML 321 (642)
Q Consensus 253 ~~~~VLDIGCGtG~--~a~~La~~g~~~~sV~giD~S~~ml~~A~er--g---l-~~~~--~~~da~~Lpfpd~-SFDlV 321 (642)
.++.++|+|.|.|. .++.+..++ +.-.++.+|.+.+|....... + + ...+ .+.--..+|.+.. .||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 45678888877654 444444443 345588899999998766422 2 1 1111 1223345665544 49999
Q ss_pred EeccccccccccHH--HHHH-HHHhcccCCcEEEEEeCCCC
Q 006518 322 HCARCGVDWDQKDG--ILLL-EVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 322 ~~s~~ll~~~~d~~--~~L~-Ei~RvLKPGG~Lvis~p~~~ 359 (642)
+|++.+++...... ...+ -+.+..++||++++...+..
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 99998555442221 2333 45667899999999988654
No 440
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=70.25 E-value=2.7 Score=37.20 Aligned_cols=34 Identities=15% Similarity=0.001 Sum_probs=28.8
Q ss_pred ccccceechhhhhHHHHhhhhhccCCCccCCcccccc
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~ 130 (642)
..||||.|++.|+.++..|+.+..-|. ++++...
T Consensus 32 ~~~gyR~Y~~~~l~~l~~I~~lr~~G~---~l~eI~~ 65 (96)
T cd04788 32 TEGGHRLYDRADIRRLHQIIALRRLGF---SLREIGR 65 (96)
T ss_pred CCCCceeeCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 358999999999999999999988877 6666654
No 441
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=69.93 E-value=18 Score=37.53 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=58.2
Q ss_pred CCCeEEEECCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecc-cCC-C-CCCCCccEEEecccc
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQL-P-YPSLSFDMLHCARCG 327 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~-g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da-~~L-p-fpd~SFDlV~~s~~l 327 (642)
...+||=+|+| .|..+..+++. |. ..|+.+|.++.-++.+++.|....+...+. ..+ . .....+|+|+-...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGA--ARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC-
Confidence 34688888875 44555556554 32 236777888888888888775332211000 000 0 12235898875422
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
....+.+..+.|+|+|.+++...
T Consensus 197 ------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ------ChHHHHHHHHHhcCCCEEEEecc
Confidence 13477888999999999997653
No 442
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=69.54 E-value=17 Score=39.28 Aligned_cols=93 Identities=13% Similarity=0.062 Sum_probs=58.4
Q ss_pred CCeEEEECCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----CCCCCCccEEEeccc
Q 006518 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARC 326 (642)
Q Consensus 254 ~~~VLDIGCG-tG~~a~~La~~-g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~L-----pfpd~SFDlV~~s~~ 326 (642)
..+||=+|+| .|.++..+++. |. ..|+.+|.+++.++.+++.|....+.. ..+.+ ....+.+|+|+-...
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~-~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGA--SQVVAVDLNEDKLALARELGATATVNA-GDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CcEEEEcCCHHHHHHHHHcCCceEeCC-CchhHHHHHHHHhCCCCCEEEECCC
Confidence 4678888876 35566666654 32 247888999999999988776433211 11111 011235898875422
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
....+.+..+.|+++|.+++...
T Consensus 269 -------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 -------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 12467788899999999987653
No 443
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=69.51 E-value=2.8 Score=38.91 Aligned_cols=34 Identities=24% Similarity=0.060 Sum_probs=28.4
Q ss_pred cccccceechhhhhHHHHhhhhhccCCCccCCccccc
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~ 129 (642)
...||||.|+++++.++..|..+..-|. ++++..
T Consensus 31 r~~~g~R~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 64 (126)
T cd04785 31 RTAGGYRLYGAAHVERLRFIRRARDLGF---SLEEIR 64 (126)
T ss_pred cCCCCccccCHHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 3469999999999999999999988888 555544
No 444
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=69.30 E-value=2.3 Score=40.67 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=28.7
Q ss_pred ccccceechhhhhHHHHhhhhhccCCCccCCcccccc
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~ 130 (642)
..||||.|++.+++++..|..++.-|. ++++...
T Consensus 39 ~~~gyR~Y~~~~l~rl~~I~~lr~~G~---sL~eI~~ 72 (144)
T PRK13752 39 PYGSIRRYGEADVTRVRFVKSAQRLGF---SLDEIAE 72 (144)
T ss_pred CCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 459999999999999999999988888 6666553
No 445
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=69.12 E-value=11 Score=39.29 Aligned_cols=97 Identities=19% Similarity=0.224 Sum_probs=58.0
Q ss_pred ccchhhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCCc
Q 006518 227 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPA 301 (642)
Q Consensus 227 yd~~~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er-----gl~~ 301 (642)
-.+.++|++.+++++....+ .. ..+..++||||-|---.=- |....--...++|.|+++..++.|+.. ++..
T Consensus 54 vPgRAdYih~laDLL~s~~g-~~-~~~~i~~LDIGvGAnCIYP-liG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~ 130 (292)
T COG3129 54 VPGRADYIHHLADLLASTSG-QI-PGKNIRILDIGVGANCIYP-LIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLER 130 (292)
T ss_pred CCChhHHHHHHHHHHHhcCC-CC-CcCceEEEeeccCcccccc-cccceeecceeecCccCHHHHHHHHHHHHcCcchhh
Confidence 35678999999999986655 11 1345689999987543322 211111135689999999888877643 2211
Q ss_pred --eEEe-ecccC----CCCCCCCccEEEeccc
Q 006518 302 --MIGS-FASKQ----LPYPSLSFDMLHCARC 326 (642)
Q Consensus 302 --~~~~-~da~~----Lpfpd~SFDlV~~s~~ 326 (642)
++.. -+... +--.++.||++.|+--
T Consensus 131 ~I~lr~qk~~~~if~giig~nE~yd~tlCNPP 162 (292)
T COG3129 131 AIRLRRQKDSDAIFNGIIGKNERYDATLCNPP 162 (292)
T ss_pred heeEEeccCccccccccccccceeeeEecCCC
Confidence 1111 11111 1122568999999977
No 446
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=69.06 E-value=3.7 Score=44.31 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=55.3
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhcccc------c-cccccc-cccCCCCCCccccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF------V-GVLHDW-CEAFPTYPRTYDLVHAEG 587 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl------~-g~~~~~-ce~~~typrtydl~h~~~ 587 (642)
.+|||++||.|.++..|.+.+ .+|+-+|-. +-|.+.-+|.- . +.-.+| +..+...+.+||+|=+..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g-----~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEG-----AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCC-----CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 379999999999999998632 256666654 45544444310 0 111112 112233468899998877
Q ss_pred ccccccCCCCCCCchhhhhhhccccCCCceeeeccCchh
Q 006518 588 LLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNSPISTC 626 (642)
Q Consensus 588 ~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~~~~~~ 626 (642)
++-++. . =.+..++-.+-++ .|+|.++.-...+.
T Consensus 221 vL~H~p---~-~~~~~ll~~l~~l-~~g~liIs~~p~~~ 254 (315)
T PLN02585 221 VLIHYP---Q-DKADGMIAHLASL-AEKRLIISFAPKTL 254 (315)
T ss_pred EEEecC---H-HHHHHHHHHHHhh-cCCEEEEEeCCcch
Confidence 765553 1 1233445555554 46666554333343
No 447
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=68.77 E-value=26 Score=35.66 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=57.4
Q ss_pred CCCeEEEECCCC-chHHHHHhhcCCceeE-EEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccc
Q 006518 253 GVRTILDIGCGY-GSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 253 ~~~~VLDIGCGt-G~~a~~La~~g~~~~s-V~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
++.+||=.|+|. |..+..+++.. ... +++++.+++..+.+++.|....+.... ... .....+|+|+....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~-~~~-~~~~~~d~vl~~~~---- 168 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEALGPADPVAADT-ADE-IGGRGADVVIEASG---- 168 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHcCCCccccccc-hhh-hcCCCCCEEEEccC----
Confidence 457788888764 55556566542 233 788898988888888776211111111 011 13346898875421
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 331 DQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
....+.+..+.|+++|.++....
T Consensus 169 ---~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 ---SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ---ChHHHHHHHHHhcCCcEEEEEec
Confidence 12467888999999999987543
No 448
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=68.61 E-value=29 Score=36.61 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=59.0
Q ss_pred CCCeEEEECCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC----C--CCCCCCccEEEecc
Q 006518 253 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ----L--PYPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~----L--pfpd~SFDlV~~s~ 325 (642)
.+.+||-.|+|. |..+..+++.- ...++.+..+++..+.+++.+....+ ...... + -.+++.+|+++...
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~~g~~~v~-~~~~~~~~~~l~~~~~~~~vd~vld~~ 235 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARELGADDTI-NVGDEDVAARLRELTDGEGADVVIDAT 235 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHHhCCCEEe-cCcccCHHHHHHHHhCCCCCCEEEECC
Confidence 446889998763 66777777652 34567777778888888776632222 111111 1 02344689998653
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
. ....+.++.+.|+++|.++....
T Consensus 236 g-------~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 236 G-------NPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred C-------CHHHHHHHHHHHhcCCEEEEEcC
Confidence 2 13467888999999999886543
No 449
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen
Probab=68.16 E-value=2.3 Score=34.86 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=27.3
Q ss_pred cccccceechhhhhHHHHhhhhhccCCCccCCcccc
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFC 128 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C 128 (642)
..-||||.|++.|+.++..|..|+..|. +++++
T Consensus 31 r~~~g~R~yt~~di~~l~~i~~l~~~g~---~l~~i 63 (68)
T cd04763 31 RSDGGHRLFNDADIDRILEIKRWIDNGV---QVSKV 63 (68)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHcCC---CHHHH
Confidence 3458999999999999999999988777 55544
No 450
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=67.87 E-value=67 Score=33.99 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=64.0
Q ss_pred CCeEEEECCCCchHHHHHhhc----CCceeEEEEecCCHHHHHHHHH---c---CCCceEEeeccc-CCC-CCCCCccEE
Q 006518 254 VRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLE---R---GLPAMIGSFASK-QLP-YPSLSFDML 321 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~----g~~~~sV~giD~S~~ml~~A~e---r---gl~~~~~~~da~-~Lp-fpd~SFDlV 321 (642)
+.+.+|+|+|+..=++.|.+. + ....++++|+++..+....+ + ++++.-.+++.+ .|. .+...=-++
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~-~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRG-SLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcC-CcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 478999999999888777653 3 34678999999988854322 1 334333333321 111 122222333
Q ss_pred Eecc-ccccccccH-HHHHHHHHhcccCCcEEEEEeCCCC
Q 006518 322 HCAR-CGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTN 359 (642)
Q Consensus 322 ~~s~-~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (642)
+... .+=.+.+++ ..+|..+...|+||-+|.+.+-..+
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 3222 222333443 4689999999999999999765443
No 451
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=67.07 E-value=4.9 Score=36.93 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=24.5
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecC
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA 286 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~ 286 (642)
......|||||.|.+.--|.+.|+.. .|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G---~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPG---WGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCc---ccccc
Confidence 34679999999999999999888664 35554
No 452
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=67.07 E-value=2.8 Score=39.26 Aligned_cols=33 Identities=18% Similarity=0.025 Sum_probs=27.3
Q ss_pred ccccceechhhhhHHHHhhhhhccCCCccCCccccc
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~ 129 (642)
.-||||.|++.|+.++..|..+..-|. ++++-.
T Consensus 33 ~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sl~eI~ 65 (131)
T TIGR02043 33 TDSGYRLYTDEDQKRLRFILKAKELGF---TLDEIK 65 (131)
T ss_pred CCCCceecCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 369999999999999999999887777 455444
No 453
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=67.02 E-value=25 Score=37.10 Aligned_cols=86 Identities=21% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCeEEEECCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 006518 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 254 ~~~VLDIGCG-tG~~a~~La~~-g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
..+||=+||| .|.++..+++. |.. .+..+|.+++.++.|.+... .+.... ....||+|+-...
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~--~v~~~~~~~~rl~~a~~~~~------i~~~~~--~~~g~Dvvid~~G----- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGS--PPAVWETNPRRRDGATGYEV------LDPEKD--PRRDYRAIYDASG----- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCHHHHHhhhhccc------cChhhc--cCCCCCEEEECCC-----
Confidence 4578888876 56777777764 432 35667888877776654321 111111 2346899886533
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
....+.+..+.|++||.+++...
T Consensus 210 --~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 --DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred --CHHHHHHHHHhhhcCcEEEEEee
Confidence 12467888899999999998654
No 454
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=66.72 E-value=2.8 Score=39.40 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=27.6
Q ss_pred cccceechhhhhHHHHhhhhhccCCCccCCcccccc
Q 006518 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (642)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~ 130 (642)
.||||.|++.++.++..|..+..-|. ++++...
T Consensus 33 ~~gyR~Y~~~~v~~l~~I~~lr~~Gf---sL~eI~~ 65 (131)
T cd04786 33 ANGYRDYPPETVWVLEIISSAQQAGF---SLDEIRQ 65 (131)
T ss_pred CCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 59999999999999999999887777 5555553
No 455
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=66.32 E-value=3.6 Score=39.11 Aligned_cols=34 Identities=26% Similarity=0.114 Sum_probs=28.3
Q ss_pred cccccceechhhhhHHHHhhhhhccCCCccCCccccc
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~ 129 (642)
...||||.|++.++.++..|..+..-|. ++++-.
T Consensus 32 r~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 65 (140)
T PRK09514 32 RTEGGYRLYTEQDLQRLRFIRRAKQLGF---TLEEIR 65 (140)
T ss_pred cCCCCCeeeCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 3479999999999999999999988877 555544
No 456
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=65.85 E-value=17 Score=42.93 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=57.7
Q ss_pred CCeEEEECCCCchHHHHHhhc-------C----CceeEEEEecCC---HHHHHHHHH--------------------cCC
Q 006518 254 VRTILDIGCGYGSFGAHLFSK-------E----LLTMCIANYEAS---GSQVQLTLE--------------------RGL 299 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~-------g----~~~~sV~giD~S---~~ml~~A~e--------------------rgl 299 (642)
.-+|||+|=|+|.......+. + ....+++.+|.. .+.+..+.+ .|.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 368999999999866555532 1 124678888853 233322211 111
Q ss_pred ----------CceEEeecccC-CCCCCCCccEEEeccccccccccH----HHHHHHHHhcccCCcEEEEE
Q 006518 300 ----------PAMIGSFASKQ-LPYPSLSFDMLHCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 300 ----------~~~~~~~da~~-Lpfpd~SFDlV~~s~~ll~~~~d~----~~~L~Ei~RvLKPGG~Lvis 354 (642)
...+..+|+.. ++--...||+++.-.. .-..++ ..++.++.|+++|||.|+-.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F--sP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF--APAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC--CCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 11233445432 2212246999987632 111233 46999999999999999843
No 457
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=65.81 E-value=3.6 Score=37.79 Aligned_cols=32 Identities=22% Similarity=0.090 Sum_probs=27.3
Q ss_pred cccceechhhhhHHHHhhhhhccCCCccCCccccc
Q 006518 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (642)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~ 129 (642)
.||||.|+++++.++..|..+..-|. ++++..
T Consensus 33 ~~gyR~Y~~~~i~~l~~I~~lr~~G~---sl~eI~ 64 (123)
T cd04770 33 ENGYRLYGEADLARLRFIRRAQALGF---SLAEIR 64 (123)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 58999999999999999999888777 555554
No 458
>cd04773 HTH_TioE_rpt2 Second Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD mainly contains the C-terminal or second repeat (rpt2) of these tandem MerR-like domain proteins.
Probab=65.80 E-value=3.1 Score=37.70 Aligned_cols=27 Identities=26% Similarity=0.181 Sum_probs=24.4
Q ss_pred ccccceechhhhhHHHHhhhhhccCCC
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLGSS 120 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g~~ 120 (642)
..||||+|++.|+.++..|..|..-|.
T Consensus 32 ~~~g~R~Y~~~dl~~l~~I~~lr~~G~ 58 (108)
T cd04773 32 PETGYRVYDPSDVRDARLIHLLRRGGY 58 (108)
T ss_pred CCCCceeeCHHHHHHHHHHHHHHHCCC
Confidence 358999999999999999999988777
No 459
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=65.75 E-value=20 Score=39.56 Aligned_cols=99 Identities=19% Similarity=0.138 Sum_probs=68.6
Q ss_pred CCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCCceEEeecccCCCCC-CCCccEEEecccc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPYP-SLSFDMLHCARCG 327 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er-----gl~~~~~~~da~~Lpfp-d~SFDlV~~s~~l 327 (642)
+.+|||-=+|+|.=+..++..... ..++..|+++..++.++++ +........|+..+-.. ...||+|=.-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD--- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID--- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC---
Confidence 478999999999999988865322 3789999999999988764 22333333444443222 3578887422
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (642)
-.-.|.-++....+.+|.||++.++....
T Consensus 129 --PFGSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 129 --PFGSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred --CCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 12334568888899999999999986533
No 460
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=65.16 E-value=36 Score=36.62 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=60.7
Q ss_pred CCCeEEEECC--CCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCCCceEEeecccCC-----CCCCCCccEEEec
Q 006518 253 GVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGLPAMIGSFASKQL-----PYPSLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGC--GtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~-ergl~~~~~~~da~~L-----pfpd~SFDlV~~s 324 (642)
++.+||=.|+ |.|.++..+++.. ...+++++.+++..+.++ +.|....+..-+...+ ....+.+|+|+-.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 4578999987 4788888888762 245778888888888876 5665433211100011 1112468988754
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.. ...+.+..+.|++||.+++...
T Consensus 236 vG--------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 236 VG--------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CC--------HHHHHHHHHHhccCCEEEEECc
Confidence 22 2467888999999999997653
No 461
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=64.96 E-value=3.7 Score=37.25 Aligned_cols=34 Identities=15% Similarity=-0.024 Sum_probs=27.2
Q ss_pred cccccceechhhhhHHHHhhhhhccCCCccCCccccc
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~ 129 (642)
...||||.|+++++.++..|..+..-|. ++++-.
T Consensus 31 r~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 64 (113)
T cd01109 31 RDENGIRDFTEEDLEWLEFIKCLRNTGM---SIKDIK 64 (113)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 3459999999999999999999886666 555543
No 462
>PRK11524 putative methyltransferase; Provisional
Probab=64.59 E-value=19 Score=38.03 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=35.9
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er 297 (642)
.+..|||-=||+|+.+....+.+ -...|+|++++.++.|++|
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHH
Confidence 45899999999999888776664 3488999999999999888
No 463
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=64.39 E-value=4.2 Score=36.26 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.4
Q ss_pred ccccceechhhhhHHHHhhhhhccC
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLG 118 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g 118 (642)
..||||.|++.|++++..|..|+.|
T Consensus 32 ~~~g~R~Y~~~~v~~l~~I~~l~~g 56 (99)
T cd04772 32 TANGYRIYTDKHIAALRAYRALLPG 56 (99)
T ss_pred CCCCCeecCHHHHHHHHHHHHHhhC
Confidence 4689999999999999999999754
No 464
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=64.33 E-value=3.4 Score=39.49 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=24.4
Q ss_pred ccccceechhhhhHHHHhhhhhccCCC
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLGSS 120 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g~~ 120 (642)
-.||||+|+++|+.++..|..+..-|.
T Consensus 32 ~~~g~R~Y~~~di~~l~~I~~lr~~G~ 58 (142)
T TIGR01950 32 NSGNQRRYKRDVLRRVAVIKAAQRVGI 58 (142)
T ss_pred CCCCCEEECHHHHHHHHHHHHHHHcCC
Confidence 358999999999999999999988777
No 465
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=63.99 E-value=25 Score=38.01 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 006518 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (642)
Q Consensus 232 ~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er 297 (642)
-+.+++.+.+...+ ....+|.=-|.|..+..+++.... ..++++|-++++++.|+++
T Consensus 7 Vll~Evl~~L~~~~--------~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~ 63 (310)
T PF01795_consen 7 VLLKEVLEALNPKP--------GGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKER 63 (310)
T ss_dssp TTHHHHHHHHT--T--------T-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCC
T ss_pred ccHHHHHHhhCcCC--------CceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHH
Confidence 34455666665443 378999999999999999987433 7899999999999999875
No 466
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=63.94 E-value=31 Score=36.90 Aligned_cols=95 Identities=9% Similarity=0.103 Sum_probs=57.2
Q ss_pred CCCeEEEECCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecc--cCC----C-C-CCCCcc----
Q 006518 253 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS--KQL----P-Y-PSLSFD---- 319 (642)
Q Consensus 253 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da--~~L----p-f-pd~SFD---- 319 (642)
.+.+||=+|+|. |..+..+++.. ...++.+|.+++.++.+++.|....+...+. +.+ . + ....+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 357899999864 66666666552 2357888999999999988775432211110 000 0 1 112344
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 320 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 320 lV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.|+-... ....+....++|++||.+++...
T Consensus 244 ~v~d~~g-------~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 244 KIFECSG-------SKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EEEECCC-------ChHHHHHHHHHHhcCCeEEEECc
Confidence 4442211 12467777889999999998764
No 467
>PF13411 MerR_1: MerR HTH family regulatory protein; PDB: 2JML_A 3GP4_A 3GPV_B.
Probab=63.87 E-value=3 Score=33.90 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=23.8
Q ss_pred cccccceechhhhhHHHHhhhhhccCCC
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSS 120 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~ 120 (642)
...||||.|+++|++.+..|..+..-|.
T Consensus 30 ~~~~g~r~y~~~dv~~l~~i~~l~~~G~ 57 (69)
T PF13411_consen 30 RDENGYRYYSEEDVERLREIKELRKQGM 57 (69)
T ss_dssp ESTTSSEEE-HHHHHHHHHHHHHHHTTT
T ss_pred cccCceeeccHHHHHHHHHHHHHHHCcC
Confidence 3679999999999999999999887666
No 468
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=63.83 E-value=3.5 Score=38.23 Aligned_cols=33 Identities=30% Similarity=0.190 Sum_probs=27.5
Q ss_pred ccccceechhhhhHHHHhhhhhccCCCccCCccccc
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~ 129 (642)
..||||.|++.++.++..|..+..-|. ++++-.
T Consensus 31 ~~~g~R~Y~~~~l~~l~~I~~l~~~G~---sl~eI~ 63 (124)
T TIGR02051 31 PEGGYRRYPEETVKRLRFIKRAQELGF---SLEEIG 63 (124)
T ss_pred CCCCCEeECHHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 458999999999999999999888777 555544
No 469
>PLN02366 spermidine synthase
Probab=63.79 E-value=6.1 Score=42.53 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=52.7
Q ss_pred ceEEEecCcCchhhhhhhhccCCCcEEEEeecCCC------CCchhhhhcccc----cc-ccccccccCCCC-CCccccc
Q 006518 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG------TNHLPMILDRGF----VG-VLHDWCEAFPTY-PRTYDLV 583 (642)
Q Consensus 516 ~rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~------~~~l~~i~~RGl----~g-~~~~~ce~~~ty-prtydl~ 583 (642)
-++|||+|+|.|+.+..+++. .++..+=+|=.+. ...++-+ ..|+ +- +..|=-+-.... ++.||+|
T Consensus 92 pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 678999999999999999862 2333222222222 1222211 1111 11 111210011222 4789999
Q ss_pred ccccccccccCCCCCCCchhhhhhhccccCCCceeee
Q 006518 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 584 h~~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~ 620 (642)
-.+. ++.... ...---..++-.+-|.|+|||.++.
T Consensus 170 i~D~-~dp~~~-~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 170 IVDS-SDPVGP-AQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEcC-CCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 7753 332210 0000113567788999999999986
No 470
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=63.21 E-value=4.7 Score=45.22 Aligned_cols=100 Identities=11% Similarity=-0.006 Sum_probs=53.1
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-Cchhhhhc----ccc-c-cccccccccCCCCCCcccccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-V-GVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl-~-g~~~~~ce~~~typrtydl~h~~~~~~ 590 (642)
+|+|++||+|.++.+|... .+- .+|+-+|-. ..+.+.-+ .|+ + =+-.||.+....-..+||+|-++-=+.
T Consensus 254 rVLDLGcGSG~IaiaLA~~-~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALE-RPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred EEEEEeChhhHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 7999999999999888642 222 244444442 33333222 232 1 223466543111124699987754321
Q ss_pred ccc------------------CCCCCCC-chhhhhhhccccCCCceeee
Q 006518 591 LES------------------GHRHRCS-TLDIFTEIDRILRPEVSKSN 620 (642)
Q Consensus 591 ~~~------------------~~~~~c~-~~~~~~e~dRilrP~g~~~~ 620 (642)
... .+.+... +..|+-+.-+.|+|||+++.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 100 0000111 22566677889999999775
No 471
>cd04764 HTH_MlrA-like_sg1 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 1). The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.
Probab=62.47 E-value=4 Score=33.27 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=27.2
Q ss_pred cccccceechhhhhHHHHhhhhhccCCCccCCcccc
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFC 128 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C 128 (642)
...+|||.|++.++.++..+..+...|. ++++.
T Consensus 30 ~~~~g~R~y~~~~l~~l~~i~~l~~~g~---~l~~i 62 (67)
T cd04764 30 RTENGRRYYTDEDIELLKKIKTLLEKGL---SIKEI 62 (67)
T ss_pred CCCCCceeeCHHHHHHHHHHHHHHHCCC---CHHHH
Confidence 4568999999999999999999888766 45443
No 472
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=62.35 E-value=3.9 Score=37.63 Aligned_cols=26 Identities=15% Similarity=-0.074 Sum_probs=23.4
Q ss_pred cccceechhhhhHHHHhhhhhccCCC
Q 006518 95 YHGYRRLQEQLVSDLWDIGEISLGSS 120 (642)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~l~~g~~ 120 (642)
.||||.|+++++.++..|..+..-|.
T Consensus 32 ~~gyR~Y~~~~l~~l~~I~~lr~~G~ 57 (120)
T cd04781 32 RGLRRQYDPQVLDRLALIALGRAAGF 57 (120)
T ss_pred CCCceecCHHHHHHHHHHHHHHHcCC
Confidence 37999999999999999999888767
No 473
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=62.06 E-value=35 Score=36.85 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=48.4
Q ss_pred hhhhHHHHHHHHhhcccccccccCCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC
Q 006518 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298 (642)
Q Consensus 230 ~~~y~~~i~e~L~~~~g~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~erg 298 (642)
..-+.++..+.+...++ ...+|.=-|.|..+..++++......++++|-++.+++.|+++-
T Consensus 8 ipVLl~E~i~~L~~~~~--------giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l 68 (314)
T COG0275 8 IPVLLNEVVELLAPKPD--------GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL 68 (314)
T ss_pred cchHHHHHHHhcccCCC--------cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHh
Confidence 34455566666654444 78999999999999999998755677999999999999998763
No 474
>PLN03075 nicotianamine synthase; Provisional
Probab=61.19 E-value=11 Score=40.47 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=53.9
Q ss_pred cceEEEecCcCchhhhhhhhccC--CCcEEEEeecCCCCCchh-hhh--cccccc----ccccccccCCCCCCccccccc
Q 006518 515 MVRNVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLP-MIL--DRGFVG----VLHDWCEAFPTYPRTYDLVHA 585 (642)
Q Consensus 515 ~~rnv~Dm~~~~g~faa~l~~~~--~~vwvmnv~p~~~~~~l~-~i~--~RGl~g----~~~~~ce~~~typrtydl~h~ 585 (642)
.-+.|+|+|||-|++.|.++... ...-+.|+=.......+. -.+ +.|+=. ..+|--+..+ -...||+|-+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEEE
Confidence 45889999999998865544210 112233332221111111 111 234311 1133333211 1267999999
Q ss_pred ccccccccCCCCCCCchhhhhhhccccCCCceeeec
Q 006518 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
. .+-.+ ++-.-..++-.+=|.|||||+++.-
T Consensus 202 ~-ALi~~----dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 202 A-ALVGM----DKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred e-ccccc----ccccHHHHHHHHHHhcCCCcEEEEe
Confidence 7 33222 1233458888999999999999875
No 475
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=61.17 E-value=42 Score=35.35 Aligned_cols=94 Identities=17% Similarity=0.116 Sum_probs=56.0
Q ss_pred CCCeEEEECCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC------CCCCCCccEEEecc
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL------PYPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~L------pfpd~SFDlV~~s~ 325 (642)
++.+||-.|+| .|..+..+++.-. ...++.++.++...+.+++.|....+. .....+ -.+.+.||+|+-..
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKEAGATDIIN-PKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHhCCcEEEc-CCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 34678887765 4666666666521 124666777777777777666322211 111111 01335699888542
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEe
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
. ....+.+..+.|+++|.++...
T Consensus 245 g-------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 245 G-------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 2 1247888899999999988654
No 476
>PLN02740 Alcohol dehydrogenase-like
Probab=60.82 E-value=35 Score=37.16 Aligned_cols=95 Identities=16% Similarity=0.059 Sum_probs=57.9
Q ss_pred CCCeEEEECCC-CchHHHHHhhcCCcee-EEEEecCCHHHHHHHHHcCCCceEEeeccc-CC-----CCCCCCccEEEec
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSKELLTM-CIANYEASGSQVQLTLERGLPAMIGSFASK-QL-----PYPSLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~g~~~~-sV~giD~S~~ml~~A~ergl~~~~~~~da~-~L-----pfpd~SFDlV~~s 324 (642)
...+||=+|+| .|..+..+++.. .. .|+++|.+++.++.+++.|....+...+.. .+ .+..+.||+|+-.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 34788888876 344555555542 23 478889999999999887764332111100 00 1112268988765
Q ss_pred cccccccccHHHHHHHHHhcccCC-cEEEEEeC
Q 006518 325 RCGVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 356 (642)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPG-G~Lvis~p 356 (642)
.. ....+.+....+++| |.+++...
T Consensus 276 ~G-------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 276 AG-------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CC-------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 32 124677777889997 98887654
No 477
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=60.78 E-value=26 Score=37.96 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=52.1
Q ss_pred CCeEEEECCC-CchHHHHHhhcCCceeEEEEecCCHHHH-HHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 006518 254 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQV-QLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 254 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~giD~S~~ml-~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
..+||=.|+| .|.++..+++.. ...++.++.+.+.. +.+++.|....+...+...+.-..+.+|+|+-...
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g----- 256 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS----- 256 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC-----
Confidence 4678888886 455666666552 23456666655443 44455565322211111111000124888875422
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
....+.+..+.|++||.++....
T Consensus 257 --~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 --AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --CHHHHHHHHHHhcCCcEEEEeCC
Confidence 12367888899999999997653
No 478
>PRK13699 putative methylase; Provisional
Probab=60.31 E-value=27 Score=35.87 Aligned_cols=42 Identities=17% Similarity=0.020 Sum_probs=35.2
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~er 297 (642)
.+..|||-=||+|+.+....+.+- .+.|+|++++..+.|.+|
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHH
Confidence 457899999999999888777653 478999999999988776
No 479
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=60.17 E-value=37 Score=36.90 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=64.1
Q ss_pred CeEEEECCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC-----CCCCC-CCccEEEecccc
Q 006518 255 RTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-----LPYPS-LSFDMLHCARCG 327 (642)
Q Consensus 255 ~~VLDIGCGt-G~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~-----Lpfpd-~SFDlV~~s~~l 327 (642)
.+|+=+|||+ |.++..+++.. ....|+.+|.+++-++.|++.+....+.....+. +.... ..||+|+=...
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 4899999994 77776666652 3456888999999999998854322221111100 11222 36999985533
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 006518 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (642)
...++.+..+++||||.+++....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 234899999999999999987654
No 480
>cd01104 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen i
Probab=60.17 E-value=4.7 Score=32.68 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=23.6
Q ss_pred ccccceechhhhhHHHHhhhhhccCCC
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLGSS 120 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g~~ 120 (642)
.-||||.|++++++.+..+..+..-|.
T Consensus 32 ~~~~~r~yt~~~v~~l~~i~~l~~~g~ 58 (68)
T cd01104 32 TDGGHRLYSEADVARLRLIRRLTSEGV 58 (68)
T ss_pred CCCCCeecCHHHHHHHHHHHHHHHCCC
Confidence 347999999999999999999988666
No 481
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=59.67 E-value=8.8 Score=38.63 Aligned_cols=101 Identities=18% Similarity=0.153 Sum_probs=56.6
Q ss_pred EEEecCcCchhhhhhhhccCCCcEEEEeecCCCC----Cchhhhhc-ccccc----ccccccccCCCCCCcccccccccc
Q 006518 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLPMILD-RGFVG----VLHDWCEAFPTYPRTYDLVHAEGL 588 (642)
Q Consensus 518 nv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~----~~l~~i~~-RGl~g----~~~~~ce~~~typrtydl~h~~~~ 588 (642)
+|+|.+||-|.+--.|++..-+-= .+=++-. .--+-|.| +|+-- .-.|.-.+ ...+--||+||--|-
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~---L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSK---LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCC---ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCc
Confidence 899999999999999986331110 1111111 11122333 45431 01111122 233466999999999
Q ss_pred cccccCCC--CCCCchhhhhhhccccCCCceeeecc
Q 006518 589 LSLESGHR--HRCSTLDIFTEIDRILRPEVSKSNSP 622 (642)
Q Consensus 589 ~~~~~~~~--~~c~~~~~~~e~dRilrP~g~~~~~~ 622 (642)
|+++.-.+ ..-.+.-.+==++++|+|+|.++.+.
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 98864210 11112344445789999999999763
No 482
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=59.62 E-value=64 Score=33.56 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=59.9
Q ss_pred CCCeEEEECC--CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----CCCCCCccEEEecc
Q 006518 253 GVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCAR 325 (642)
Q Consensus 253 ~~~~VLDIGC--GtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~L-----pfpd~SFDlV~~s~ 325 (642)
++.+||=.|+ |.|.++..+++.. ...+++++.+++..+.+++.|....+. .....+ ....+.+|+|+-..
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~~~~gvd~vld~~ 219 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKELGFDAVFN-YKTVSLEEALKEAAPDGIDCYFDNV 219 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEe-CCCccHHHHHHHHCCCCcEEEEECC
Confidence 3478888874 5777877777752 245778888888888888877533221 111111 11224689887542
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEe
Q 006518 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (642)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (642)
. ...+.+..+.|+++|.++...
T Consensus 220 g--------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 220 G--------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred C--------HHHHHHHHHhhccCCEEEEEc
Confidence 2 246788999999999998754
No 483
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=59.56 E-value=28 Score=39.11 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=57.3
Q ss_pred CCCeEEEECCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccc
Q 006518 253 GVRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (642)
Q Consensus 253 ~~~~VLDIGCGt-G~~a~~La~~-g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~ 330 (642)
.+++|+=+|+|. |.....+++. | ++|+.+|.++.-.+.|.+.|.... ... +.+ ..+|+|+....
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~G---a~ViV~d~d~~R~~~A~~~G~~~~--~~~-e~v----~~aDVVI~atG---- 266 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQG---ARVIVTEVDPICALQAAMEGYEVM--TME-EAV----KEGDIFVTTTG---- 266 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECChhhHHHHHhcCCEEc--cHH-HHH----cCCCEEEECCC----
Confidence 458999999995 5555545443 4 357779999888888888775321 111 111 24799987532
Q ss_pred cccHHHHHH-HHHhcccCCcEEEEEeCC
Q 006518 331 DQKDGILLL-EVDRVLKPGGYFVWTSPL 357 (642)
Q Consensus 331 ~~d~~~~L~-Ei~RvLKPGG~Lvis~p~ 357 (642)
.. ..+. +..+.+|+||+++.....
T Consensus 267 --~~-~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 --NK-DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred --CH-HHHHHHHHhcCCCCcEEEEeCCC
Confidence 22 3444 458899999999887643
No 484
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=59.54 E-value=42 Score=35.66 Aligned_cols=94 Identities=11% Similarity=0.122 Sum_probs=55.8
Q ss_pred CCCeEEEECCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC---C--CCCCCCcc-EEEec
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ---L--PYPSLSFD-MLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~-g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~---L--pfpd~SFD-lV~~s 324 (642)
...+||=.|+| .|.++..+++. |. ..++.++.+++-.+.+++.|....+. ..... + -.....+| +|+-.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~d~~v~d~ 236 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGA--KSVTAIDINSEKLALAKSLGAMQTFN-SREMSAPQIQSVLRELRFDQLILET 236 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCceEec-CcccCHHHHHHHhcCCCCCeEEEEC
Confidence 34788888875 34455555554 32 23677888988888887766532221 11000 0 01223577 55432
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
.. ....+.+..+.|++||.+++...
T Consensus 237 ~G-------~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 237 AG-------VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CC-------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 11 13478888999999999998754
No 485
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=59.28 E-value=5.8 Score=36.74 Aligned_cols=27 Identities=30% Similarity=0.206 Sum_probs=24.5
Q ss_pred ccccceechhhhhHHHHhhhhhccCCC
Q 006518 94 IYHGYRRLQEQLVSDLWDIGEISLGSS 120 (642)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~l~~g~~ 120 (642)
..||||.|++.++.++..|..+..-|.
T Consensus 32 ~~~gyR~Y~~~~l~~l~~I~~lr~~G~ 58 (126)
T cd04783 32 PEGGYRRYPEETVTRLRFIKRAQELGF 58 (126)
T ss_pred CCCCCeecCHHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999988877
No 486
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=58.99 E-value=25 Score=39.11 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=32.3
Q ss_pred CCCeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH
Q 006518 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295 (642)
Q Consensus 253 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ 295 (642)
+...|.|+|.|.|.++..|.-.. ..+|.++|.|....+.|+
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHH
Confidence 45789999999999999987542 467999999976655543
No 487
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=58.78 E-value=81 Score=34.87 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=59.2
Q ss_pred CeEEEECCCCchH----HHHHhhc--CCceeEEEEecC----CHHHH--------HHHHHcCCCceEEeecc---cCC--
Q 006518 255 RTILDIGCGYGSF----GAHLFSK--ELLTMCIANYEA----SGSQV--------QLTLERGLPAMIGSFAS---KQL-- 311 (642)
Q Consensus 255 ~~VLDIGCGtG~~----a~~La~~--g~~~~sV~giD~----S~~ml--------~~A~ergl~~~~~~~da---~~L-- 311 (642)
-.|+|+|.|.|.- ...|+.+ +.+...||+++. +...+ ++|+..|++..|..... +.+
T Consensus 112 vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~ 191 (374)
T PF03514_consen 112 VHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDP 191 (374)
T ss_pred eEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCH
Confidence 5799999999964 4444444 567899999999 55555 35555688877754322 222
Q ss_pred ---CCCCCCccEEEecccccccc------ccHHHHHHHHHhcccCCcEEEEE
Q 006518 312 ---PYPSLSFDMLHCARCGVDWD------QKDGILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 312 ---pfpd~SFDlV~~s~~ll~~~------~d~~~~L~Ei~RvLKPGG~Lvis 354 (642)
...++..=+|-|...+.+.. .++...+-...|-|+|.-..++.
T Consensus 192 ~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 192 SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 22333333444554433332 12334566777789998554443
No 488
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=58.17 E-value=61 Score=33.74 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=54.7
Q ss_pred CCCeEEEECCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~ 331 (642)
...+||=.|+| .|..+..+++.. ...++.++.+++..+.+++.|....+. .... ...+.||+|+-...
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~--G~~vi~~~~~~~~~~~~~~~g~~~~~~---~~~~-~~~~~~d~vid~~g----- 223 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALT--GPDVVLVGRHSEKLALARRLGVETVLP---DEAE-SEGGGFDVVVEATG----- 223 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHcCCcEEeC---cccc-ccCCCCCEEEECCC-----
Confidence 34678888753 233333344331 234777888888899888866543221 1111 24456999986422
Q ss_pred ccHHHHHHHHHhcccCCcEEEEE
Q 006518 332 QKDGILLLEVDRVLKPGGYFVWT 354 (642)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis 354 (642)
....+....+.|+++|.++..
T Consensus 224 --~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 --SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred --ChHHHHHHHHHhhcCCEEEEE
Confidence 134677888899999999973
No 489
>PLN02827 Alcohol dehydrogenase-like
Probab=58.03 E-value=31 Score=37.65 Aligned_cols=94 Identities=13% Similarity=0.013 Sum_probs=56.7
Q ss_pred CCCeEEEECCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecc-cCC-----CCCCCCccEEEec
Q 006518 253 GVRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQL-----PYPSLSFDMLHCA 324 (642)
Q Consensus 253 ~~~~VLDIGCG-tG~~a~~La~~-g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da-~~L-----pfpd~SFDlV~~s 324 (642)
.+.+||=+|+| .|.++..+++. |. ..++++|.+++..+.|++.|....+...+. +.. ....+.+|+|+-.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~--~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 270 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGA--SQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFEC 270 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEEC
Confidence 45789988875 34455555544 32 247788988888999988776432211110 000 0112258988754
Q ss_pred cccccccccHHHHHHHHHhcccCC-cEEEEEe
Q 006518 325 RCGVDWDQKDGILLLEVDRVLKPG-GYFVWTS 355 (642)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPG-G~Lvis~ 355 (642)
.. ....+.+..+.|++| |.+++..
T Consensus 271 ~G-------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 271 VG-------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CC-------ChHHHHHHHHhhccCCCEEEEEC
Confidence 22 123577788899998 9998754
No 490
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=58.02 E-value=8 Score=39.85 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=63.3
Q ss_pred eEEEecCcCchhhhhhhhccCCCcEEEEeecCCCC-----Cchhhhhcccc--cccc-ccccccCCCCC-C-cccccccc
Q 006518 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-----NHLPMILDRGF--VGVL-HDWCEAFPTYP-R-TYDLVHAE 586 (642)
Q Consensus 517 rnv~Dm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-----~~l~~i~~RGl--~g~~-~~~ce~~~typ-r-tydl~h~~ 586 (642)
..++++|||.|.|-++|+.. .|-+ |++=++-. .-+.-|-+.|| |-++ +|=-+-+..++ . +.|-|+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~--nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i- 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEK--NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI- 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCC--CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE-
Confidence 47999999999999999863 4544 44444332 33445666777 4444 23333344444 3 7887765
Q ss_pred ccc-ccccCCCC---CCCchhhhhhhccccCCCceeeec
Q 006518 587 GLL-SLESGHRH---RCSTLDIFTEIDRILRPEVSKSNS 621 (642)
Q Consensus 587 ~~~-~~~~~~~~---~c~~~~~~~e~dRilrP~g~~~~~ 621 (642)
.| +-|...+| |=--...|-++-|+|+|||.+-..
T Consensus 126 -~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 126 -NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred -ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 34 34543333 344458888999999999998653
No 491
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=57.91 E-value=5.1 Score=36.01 Aligned_cols=33 Identities=21% Similarity=-0.049 Sum_probs=27.8
Q ss_pred cccceechhhhhHHHHhhhhhccCCCccCCcccccc
Q 006518 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (642)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~~~~C~~ 130 (642)
.||||+|++.++.++..|..+..=|. ++++-..
T Consensus 31 ~~g~r~Y~~~~~~~l~~I~~lr~~G~---sL~eI~~ 63 (107)
T cd04777 31 KGGQYFFDEKCQDDLEFILELKGLGF---SLIEIQK 63 (107)
T ss_pred CCCccccCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 48999999999999999999988878 6666553
No 492
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=57.90 E-value=23 Score=36.76 Aligned_cols=69 Identities=22% Similarity=0.150 Sum_probs=39.1
Q ss_pred CeEEEECCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH---Hc---CC--------CceEEeecccC-CCCCCCCcc
Q 006518 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL---ER---GL--------PAMIGSFASKQ-LPYPSLSFD 319 (642)
Q Consensus 255 ~~VLDIGCGtG~~a~~La~~g~~~~sV~giD~S~~ml~~A~---er---gl--------~~~~~~~da~~-Lpfpd~SFD 319 (642)
.+|||.=+|-|.-+..++..|. +|+++|-|+-+....+ ++ .. .+.+...|... |..++++||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~---~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC---KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--S
T ss_pred CEEEECCCcchHHHHHHHccCC---eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCC
Confidence 4899999999999999987764 5999999986642221 11 11 23345555433 556678999
Q ss_pred EEEeccc
Q 006518 320 MLHCARC 326 (642)
Q Consensus 320 lV~~s~~ 326 (642)
+|+.--.
T Consensus 154 VVY~DPM 160 (234)
T PF04445_consen 154 VVYFDPM 160 (234)
T ss_dssp EEEE--S
T ss_pred EEEECCC
Confidence 9998765
No 493
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=57.84 E-value=44 Score=35.53 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=61.1
Q ss_pred CeEEEECCC--CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 006518 255 RTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (642)
Q Consensus 255 ~~VLDIGCG--tG~~a~~La~~g~~~~sV~giD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~SFDlV~~s~~ll~~~~ 332 (642)
.+|+=+|.| -|+++..+.+.| ....+++.|.+.+.++.+.+.|+........ .--.....|+|+-+- .. .
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~---~~~~~~~aD~Vivav---Pi-~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALELGVIDELTVAG---LAEAAAEADLVIVAV---PI-E 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcC-CeEEEEeecCcHHHHHHHhhcCcccccccch---hhhhcccCCEEEEec---cH-H
Confidence 567777877 567788887777 4577899999999999998877644322111 011234589998762 21 2
Q ss_pred cHHHHHHHHHhcccCCcEEE
Q 006518 333 KDGILLLEVDRVLKPGGYFV 352 (642)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lv 352 (642)
....+++++...|++|..+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHHHhcccCCCCCEEE
Confidence 33568999999999987644
No 494
>cd04780 HTH_MerR-like_sg5 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 5), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=57.27 E-value=4.6 Score=35.81 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=28.2
Q ss_pred cccccceechhhhhHHHHhhhhhcc-CCCccCCcccccc
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISL-GSSRSKDLEFCSE 130 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~-g~~~~~~~~~C~~ 130 (642)
..-||||.|++.+++++..|+.|.. .|. ++++...
T Consensus 31 r~~~g~r~Y~~~dv~~l~~I~~L~~~~G~---~l~~I~~ 66 (95)
T cd04780 31 RLAPNQAEYSEAHVERLRLIRALQQEGGL---PISQIKE 66 (95)
T ss_pred CCCCCCeecCHHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 4458999999999999999999975 456 5666655
No 495
>cd04774 HTH_YfmP Helix-Turn-Helix DNA binding domain of the YfmP transcription regulator. Helix-turn-helix (HTH) transcription regulator, YfmP, and related proteins; N-terminal domain. YfmP regulates the multidrug efflux protein, YfmO, and indirectly regulates the expression of the Bacillus subtilis copZA operon encoding a metallochaperone, CopZ, and a CPx-type ATPase efflux protein, CopA. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=57.08 E-value=5.5 Score=35.36 Aligned_cols=28 Identities=18% Similarity=-0.003 Sum_probs=24.4
Q ss_pred cccccceechhhhhHHHHhhhhhcc-CCC
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISL-GSS 120 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~-g~~ 120 (642)
..-||||.|++.|+.++..|..|.. .|.
T Consensus 30 r~~~g~R~Y~~~dv~~l~~I~~L~~~~G~ 58 (96)
T cd04774 30 RSEGRYRLYSEEDLKRLERILRLREVLGF 58 (96)
T ss_pred cCCCCCEEECHHHHHHHHHHHHHHHHcCC
Confidence 3459999999999999999999987 556
No 496
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=56.67 E-value=20 Score=39.53 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=34.9
Q ss_pred CCeEEEECCCCchHHHHHhhcC-------CceeEEEEecCCHHHHHHHHHc
Q 006518 254 VRTILDIGCGYGSFGAHLFSKE-------LLTMCIANYEASGSQVQLTLER 297 (642)
Q Consensus 254 ~~~VLDIGCGtG~~a~~La~~g-------~~~~sV~giD~S~~ml~~A~er 297 (642)
+..++|||.|+|.++..+++.- +...++.-+++|++..+.-++.
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 4689999999999999887641 2467899999999987665544
No 497
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=56.63 E-value=1.8 Score=38.52 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=28.6
Q ss_pred cccccceechhhhhHHHHhhhhhcc-CCCccCCcccccc
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISL-GSSRSKDLEFCSE 130 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~-g~~~~~~~~~C~~ 130 (642)
...+|||+|+++|+.++..|..|+. .|. +++....
T Consensus 31 r~~~g~R~Ys~~dv~~l~~I~~L~~~~G~---~l~~i~~ 66 (98)
T cd01279 31 RTNGGGRRYSNNDLELLRQVQRLSQDEGF---NLAGIKR 66 (98)
T ss_pred cCCCCCeeECHHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 3458999999999999999999887 666 5666554
No 498
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=56.59 E-value=62 Score=34.29 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCCeEEEECCCC-chHHHHHhhcCCceeE-EEEecCCHHHHHHHHHcCCCceEEeecccC-------C--CCCCCCccEE
Q 006518 253 GVRTILDIGCGY-GSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFASKQ-------L--PYPSLSFDML 321 (642)
Q Consensus 253 ~~~~VLDIGCGt-G~~a~~La~~g~~~~s-V~giD~S~~ml~~A~ergl~~~~~~~da~~-------L--pfpd~SFDlV 321 (642)
++.+||-.|+|. |..+..+++.. ... ++.++.+++..+.+++.+....+. ..... + ......||+|
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~~~~~~~~~~~~~~d~v 238 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKELGATHTVN-VRTEDTPESAEKIAELLGGKGPDVV 238 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcCCcEEec-cccccchhHHHHHHHHhCCCCCCEE
Confidence 346777777764 56666666652 233 677777888887776655433221 11111 0 1233459999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
+-... ....+.+..+.|+++|.++....
T Consensus 239 ld~~g-------~~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 239 IECTG-------AESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred EECCC-------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 85422 12367888999999999987653
No 499
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=55.77 E-value=2.1 Score=37.38 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=28.3
Q ss_pred cccccceechhhhhHHHHhhhhhcc-CCCccCCcccccc
Q 006518 93 HIYHGYRRLQEQLVSDLWDIGEISL-GSSRSKDLEFCSE 130 (642)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~l~~-g~~~~~~~~~C~~ 130 (642)
...+|||+|++.|+.++..|..|.. -|. +++....
T Consensus 31 r~~~g~R~y~~~dv~~l~~i~~L~~d~g~---~l~~i~~ 66 (91)
T cd04766 31 RTDGGTRRYSERDIERLRRIQRLTQELGV---NLAGVKR 66 (91)
T ss_pred cCCCCCeeECHHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 3457999999999999999999977 556 5666655
No 500
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=55.40 E-value=72 Score=33.60 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=57.0
Q ss_pred CCCeEEEECCCC-chHHHHHhhcCCceeE-EEEecCCHHHHHHHHHcCCCceEEeec--ccCC-CC-CCCCccEEEeccc
Q 006518 253 GVRTILDIGCGY-GSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFA--SKQL-PY-PSLSFDMLHCARC 326 (642)
Q Consensus 253 ~~~~VLDIGCGt-G~~a~~La~~g~~~~s-V~giD~S~~ml~~A~ergl~~~~~~~d--a~~L-pf-pd~SFDlV~~s~~ 326 (642)
+..+||-.|+|. |.++..+++.. ... ++.++.++...+.+.+.+....+..-+ ...+ .. +...||+|+....
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g 236 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAG 236 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECCC
Confidence 346888888754 56666666542 233 777888888888776666422221100 0010 11 2235999985421
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 006518 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (642)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (642)
....+.++.+.|+++|.++....
T Consensus 237 -------~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 237 -------SPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 23467888999999999887653
Done!