Query 006520
Match_columns 642
No_of_seqs 198 out of 363
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 00:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1901 Uncharacterized high-g 100.0 3.6E-83 7.9E-88 685.6 34.2 459 25-557 3-468 (487)
2 PF04146 YTH: YT521-B-like dom 100.0 1.2E-48 2.7E-53 362.2 8.6 136 387-528 1-140 (140)
3 KOG1902 Putative signal transd 100.0 2.2E-41 4.8E-46 349.1 11.7 149 374-530 60-213 (441)
4 PRK00809 hypothetical protein; 94.1 0.21 4.7E-06 47.8 8.0 122 389-522 2-142 (144)
5 PF01878 EVE: EVE domain; Int 81.0 3.8 8.3E-05 38.1 5.9 128 389-524 1-143 (143)
6 PF03875 Statherin: Statherin; 41.5 26 0.00056 27.7 2.5 28 60-98 14-41 (42)
7 PF10539 Dev_Cell_Death: Devel 39.2 58 0.0013 31.5 5.1 116 396-525 8-130 (130)
8 KOG0260 RNA polymerase II, lar 33.6 1.2E+03 0.027 30.5 18.5 29 47-77 1416-1445(1605)
9 PRK02268 hypothetical protein; 33.4 2.6E+02 0.0056 27.4 8.5 122 389-526 3-137 (141)
10 smart00767 DCD DCD is a plant 21.0 2.3E+02 0.0051 27.6 5.7 117 396-526 10-131 (132)
No 1
>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]
Probab=100.00 E-value=3.6e-83 Score=685.64 Aligned_cols=459 Identities=44% Similarity=0.670 Sum_probs=327.5
Q ss_pred CCCCCCccccccccCCCCCCcccccCCCcccc-ccCCCC--CCCCCCCCCCCCCCcCCCCCccccCCCCCCC-CCCCCCC
Q 006520 25 NVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMY-HHGYGY--APYPPYSPATSPVPTMGTDGQLYGPQHYQYP-HYFQPIT 100 (642)
Q Consensus 25 ~~~~w~~y~~Yvn~dg~e~~~gvy~dn~Sl~y-~~Gygy--~pYg~Ysp~~sP~p~~g~DgQlyg~q~y~yp-~yyq~~~ 100 (642)
.+.+ ++|+-|.|.|++.+. ++.+.+.+++. ...+++ .||.|+++ .++++|.|++++.+|++++. ++|-+.+
T Consensus 3 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~s 77 (487)
T KOG1901|consen 3 SGLY-TDYGVVSNSESVQPD-GGQGQESANTSYPTSLGYHSFPYNPSSY---AASSLGSDGSLGEPQQNPLYSPSYGPVS 77 (487)
T ss_pred CCCc-CCccccccCcccccC-CccCCCcccccCCccccccCCCCCCCcc---cccCCCCCccccccccccccCCCcCccc
Confidence 4556 899999999994444 44444454444 333343 23444433 34588999999999999997 5554222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCccccCCCCCCCcccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006520 101 PTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPA 180 (642)
Q Consensus 101 ~~~~~y~~s~~~~~q~e~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~~~~~~~~~~p~~~~~~~~gsyg~g~~~~~~p~ 180 (642)
.|+........++++....+.. ...+..+. +. +.+..|... ..+.++ ..-+.+.|.
T Consensus 78 ---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------~~--~~~~~p~~~---~~~~~~-~~~~~~~~~ 133 (487)
T KOG1901|consen 78 ---LPTASTSGSSTFSNLTLRKAPG---FSSSGPKQ------------GG--SMPSDPRGS---AQRNSS-ISASPGYPP 133 (487)
T ss_pred ---CccccccCcccccchhhhcccc---cccccccc------------Cc--CCCCCCccc---cccccc-ccCCCCCCC
Confidence 2233333333344443322221 01111111 10 122222222 111121 122233445
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccccccCCcccCCCCCCCCCCCCcCCCCCCCCCCCC-CCCCCC
Q 006520 181 SGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMG-AAQGFM 259 (642)
Q Consensus 181 ~gy~~~~~~~dg~~~~~~~~d~~~~s~~~~~~~~~~s~s~~~~~~~~~~~nq~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 259 (642)
.+|.+|++..+..... +..++..+.+++.+....+.+.++ ...+|+
T Consensus 134 ~~~~~P~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 180 (487)
T KOG1901|consen 134 LPYSAPKFASDLIPGK---------------------------------PPPPISGNTGPPTPDSKGPVSSSGHNAQGYY 180 (487)
T ss_pred cccCCCccccccccCC---------------------------------CCCCccccCCCCCcccCCcccCCcccccccc
Confidence 5777777666641100 112222223333333333333332 345665
Q ss_pred ccCccCC-CcccCcCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCccCCCCC-CccccccccCCCCCCCCC
Q 006520 260 NMNRMYP-NKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNE-NMDGLNELNRGPRAKGAK 337 (642)
Q Consensus 260 ~~~~~y~-~~~y~~~g~~~~~~~~~~~~~~~~~~~~r~w~~~~~k~~~~~~~~~~~~~~~~-~~~~~~e~nrgpr~~~~~ 337 (642)
++++. .+.|+.+..+...+..|+...+.....+|+|..+++..+..+.. ......++ ..+.++|+|||||+...+
T Consensus 181 --~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~nrg~~s~~~~ 257 (487)
T KOG1901|consen 181 --DQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWGIN-YPRLPSDEAGSDSLNEQNRGPRSSDSR 257 (487)
T ss_pred --cccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCccccccc-CCCccccccccccccccccCccccccc
Confidence 45555 34565555555557889999999889999999999755544422 22223332 378899999999999999
Q ss_pred CCCCCCCCcccccccccccCCCCcccCCcccCCCCcccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchH
Q 006520 338 NQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGN 417 (642)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~df~~~y~~aRFFIIKS~nedNIhkSIKygVWaTTp~nn 417 (642)
++.........+...+. .+...+++++++||+++|.+.+.+||||||||++|||||+||||+|||+|+++|
T Consensus 258 ~~~~~~~~~~~~~~~s~---------~~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GN 328 (487)
T KOG1901|consen 258 GQDINSSGPTEAGSASA---------PESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGN 328 (487)
T ss_pred CccccCCcchhcccccc---------ccccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCCc
Confidence 88754443333322111 111256899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchhhccccCcCccceeEEEeecCCCccccccccC
Q 006520 418 KKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE 497 (642)
Q Consensus 418 kKLn~AF~ea~~k~~~~pVfLfFSVN~SG~FqG~AeM~SpVDf~ks~~~WqqdKw~G~F~VeWi~vkDVPf~~lrHI~N~ 497 (642)
||||+||++++.+..+||||||||||+||||||+|||++||||+++++|||||||.|.|+||||+||||||..||||+++
T Consensus 329 KkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~Le 408 (487)
T KOG1901|consen 329 KKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIILE 408 (487)
T ss_pred hhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEee
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeecCCCcccchHHHHHHHHHHhcCCCCcccccchhhhHHHHHHHHHHHHHhhh
Q 006520 498 NNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQ 557 (642)
Q Consensus 498 ~NENKPVt~SRDgQEIe~e~G~qLLkIF~~~~~~tSIlDDF~~Ye~rek~~~e~r~~~~~ 557 (642)
+|||||||++||+|||.+++|++||+||+++.++|||||||.|||.||+.|+++|+|+..
T Consensus 409 NNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiLDDf~~Ye~rq~~~~~~k~r~~~ 468 (487)
T KOG1901|consen 409 NNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSILDDFGFYEERQKIIQDKKARQPP 468 (487)
T ss_pred cCCCCCcccccccceecHHHHHHHHHHHHhhcceeeecccccchHHHHHHhhhcccccCc
Confidence 999999999999999999999999999999999999999999999999999999998864
No 2
>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.
Probab=100.00 E-value=1.2e-48 Score=362.17 Aligned_cols=136 Identities=50% Similarity=0.896 Sum_probs=114.2
Q ss_pred CceEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchh
Q 006520 387 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEY 466 (642)
Q Consensus 387 ~aRFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pVfLfFSVN~SG~FqG~AeM~SpVDf~ks~~~ 466 (642)
++|||||||+|++|||+|+++|||+|+++++++|++||++++ +||||||||+||+|||||+|+|+++++....+
T Consensus 1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~~------~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~ 74 (140)
T PF04146_consen 1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKESR------NVYLFFSVNGSGHFQGYARMTSPIDPDSPKPF 74 (140)
T ss_dssp --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHSS-------EEEEEEETTTSEEEEEEEEECECCSSS----
T ss_pred CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhCC------CEEEEEeecCcceEEEEEEEccCCCCcccCcc
Confidence 579999999999999999999999999999999999999983 89999999999999999999999999998999
Q ss_pred hc----cccCcCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 006520 467 WQ----QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 528 (642)
Q Consensus 467 Wq----qdKw~G~F~VeWi~vkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF~~~ 528 (642)
|. ..+|+|.|+|+||++++|||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus 75 w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~~G~~l~~~f~~~ 140 (140)
T PF04146_consen 75 WQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPEIGEQLLKIFDNQ 140 (140)
T ss_dssp --SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CCHHHHHHHHCGT-
T ss_pred ccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHHHHHHHHHHHhhC
Confidence 95 469999999999999999999999999999999999999999999999999999999863
No 3
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=100.00 E-value=2.2e-41 Score=349.15 Aligned_cols=149 Identities=36% Similarity=0.615 Sum_probs=138.3
Q ss_pred ccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEE
Q 006520 374 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAE 453 (642)
Q Consensus 374 ~qyN~~df~~~y~~aRFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pVfLfFSVN~SG~FqG~Ae 453 (642)
+++++...+. ..+|||||||.|.+||.+|++.|||+||+.|++||+.||+++ ..||||||||.||||||||+
T Consensus 60 ~~~~~ss~~~--~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s------~~ViLIFSVn~SghFQG~Ar 131 (441)
T KOG1902|consen 60 DQTSKLKYVL--QDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSS------RSVILIFSVNESGHFQGFAR 131 (441)
T ss_pred hhcccccccC--CceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhc------CcEEEEEEecccccchhhhh
Confidence 5666655444 678999999999999999999999999999999999999998 48999999999999999999
Q ss_pred ecCCCCCCCCchhhcc-----ccCcCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 006520 454 MAGPVDFNKNVEYWQQ-----DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 528 (642)
Q Consensus 454 M~SpVDf~ks~~~Wqq-----dKw~G~F~VeWi~vkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF~~~ 528 (642)
|+|+|-..++-..|.+ ..|++.|+||||++++|||.++.||+|+|||||||++|||||||++++|+|||.|+...
T Consensus 132 MsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~Ll~~~ 211 (441)
T KOG1902|consen 132 MSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLLLPPD 211 (441)
T ss_pred hcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHhcCCC
Confidence 9999998888877865 67999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 006520 529 PS 530 (642)
Q Consensus 529 ~~ 530 (642)
++
T Consensus 212 p~ 213 (441)
T KOG1902|consen 212 PS 213 (441)
T ss_pred cc
Confidence 64
No 4
>PRK00809 hypothetical protein; Provisional
Probab=94.11 E-value=0.21 Score=47.83 Aligned_cols=122 Identities=10% Similarity=0.155 Sum_probs=74.3
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC------CCCCeeEEEEecCCCCCCC
Q 006520 389 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVDFNK 462 (642)
Q Consensus 389 RFFIIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pVfLfFSVN------~SG~FqG~AeM~SpVDf~k 462 (642)
+|+|+=+ |+||+......|||-.....-.-|.+ . .....+||++-+ .-..|.|+|++++..-.+.
T Consensus 2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr~----M----k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~ 72 (144)
T PRK00809 2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIEK----V----KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDS 72 (144)
T ss_pred ceEEEec-CHHHHHHHHhCCEeecchhhhhHHhh----C----CCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCC
Confidence 6777766 99999999999999996542222221 1 134788888887 5789999999998652222
Q ss_pred Cchhhc------cccCcCccceeEEEeec--CCCcccc-cc---ccCCCCCCce-eecCCCcccchHHHHHHH
Q 006520 463 NVEYWQ------QDKWTGCFPVKWHIVKD--VPNSLLK-HI---TLENNENKPV-TNSRDTQEIKLEQGLKLI 522 (642)
Q Consensus 463 s~~~Wq------qdKw~G~F~VeWi~vkD--VPf~~lr-HI---~N~~NENKPV-t~SRDgQEIe~e~G~qLL 522 (642)
+ .+|. .+.+--..+|+++.+.+ ||...|. +| ++.-.=...+ ..+| .||..+.-..|+
T Consensus 73 t-~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L~~~L~fik~~~~w~~~l~R~~~--~~I~~~d~~~I~ 142 (144)
T PRK00809 73 T-PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPLIPKLKFIENKKQWSGHLRNRAM--RPIPEEDYKLIE 142 (144)
T ss_pred c-cCCCccccCCCCCceEEEEEEEeeecCCcccHHHHHhhhhhhhcccccchhhhcCCC--ccCCHHHHHHHh
Confidence 2 2332 12222467899998877 7766551 11 2111101122 4555 777766665544
No 5
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=80.98 E-value=3.8 Score=38.14 Aligned_cols=128 Identities=14% Similarity=0.209 Sum_probs=62.5
Q ss_pred eEEEEecC----ChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCCCCCC--
Q 006520 389 KFFVIKSY----SEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPVDFN-- 461 (642)
Q Consensus 389 RFFIIKS~----nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pVfLfFSVN-~SG~FqG~AeM~SpVDf~-- 461 (642)
+|+|+|+. +-+++ .-.+..+|.-..+...+- .+++.+ ...-+||+.-+ +.+.|.|+|+.++..-.+
T Consensus 1 ~YWl~~~~P~~~~~~~~-~~~~~~~~~gv~~~~~~~--~l~~mk----~GD~vifY~s~~~~~~ivai~~V~~~~~~d~~ 73 (143)
T PF01878_consen 1 RYWLLKANPENFSIDDL-EHWGVTVWDGVRNYQARK--NLKRMK----PGDKVIFYHSGCKERGIVAIGEVVSEPYPDPT 73 (143)
T ss_dssp -EEEEEEBTTTSHHHHH-HHHSEEECHTEEEHHHHH--HHHC------TT-EEEEEETSSSS-EEEEEEEEEEEEEE-GG
T ss_pred CEEEEEeCCcccCHHHh-cccceEEEcCEeehhhhh--hhhcCC----CCCEEEEEEcCCCCCEEEEEEEEeccccCCCc
Confidence 68999998 76666 444445555333322221 444442 34677778777 689999999999864221
Q ss_pred ---CCchhhcccc--CcCccceeEEEeec--CCCccccccccCCCCCCceeec-CCCcccchHHHHHHHHH
Q 006520 462 ---KNVEYWQQDK--WTGCFPVKWHIVKD--VPNSLLKHITLENNENKPVTNS-RDTQEIKLEQGLKLIKI 524 (642)
Q Consensus 462 ---ks~~~WqqdK--w~G~F~VeWi~vkD--VPf~~lrHI~N~~NENKPVt~S-RDgQEIe~e~G~qLLkI 524 (642)
....++.... .....+|+++.+-+ |+...||.. ..+.+-.-++.. .--.+|..+.-..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk~~-~~l~~l~~i~~~r~s~~~it~~~~~~I~~~ 143 (143)
T PF01878_consen 74 AFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELKAE-PELENLSFIRNKRLSVFPITEEDFEAIMEM 143 (143)
T ss_dssp GTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHHC--GGGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred cccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHhcC-CccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence 1112111111 22356788886544 444555432 111111122222 23356666666666553
No 6
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=41.54 E-value=26 Score=27.66 Aligned_cols=28 Identities=46% Similarity=0.928 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCC
Q 006520 60 YGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQP 98 (642)
Q Consensus 60 ygy~pYg~Ysp~~sP~p~~g~DgQlyg~q~y~yp~yyq~ 98 (642)
|+|.-|||| -|+|-- -|| +|.|| |+|||
T Consensus 14 ~~~grygpy----qp~peq----~ly-pqpyq--p~yqq 41 (42)
T PF03875_consen 14 FFYGRYGPY----QPFPEQ----PLY-PQPYQ--PPYQQ 41 (42)
T ss_pred hcccccCCc----CCCCCC----cCC-CCCCC--Ccccc
Confidence 344446777 455542 256 66555 44543
No 7
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=39.24 E-value=58 Score=31.51 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=78.8
Q ss_pred CChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchhhcccc----
Q 006520 396 YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDK---- 471 (642)
Q Consensus 396 ~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pVfLfFSVN~SG~FqG~AeM~SpVDf~ks~~~WqqdK---- 471 (642)
+|.+-+..+.++.+.-....... |-+. ...+-++|||= -..++..|+=|-+|.-..+....-|..+.
T Consensus 8 Cn~~T~~ECf~~~lFGLP~~~~~-----~V~~--I~pG~~LFLfn--~~~r~L~GifeA~S~G~~ni~p~Af~~~~~~~~ 78 (130)
T PF10539_consen 8 CNNKTKPECFRRQLFGLPAGHKD-----FVKK--IKPGMPLFLFN--YSDRKLYGIFEATSDGGMNIEPYAFSGSGSGES 78 (130)
T ss_pred ECCCCHHHHHhcccccCChhhhh-----HHhe--eCCCCEEEEEE--cCCCEEEEEEEecCCCccCcChhhhCCCCCCCc
Confidence 44455677788888877755322 1111 12345677642 35789999999999887777777787633
Q ss_pred -Cc--CccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHH
Q 006520 472 -WT--GCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIF 525 (642)
Q Consensus 472 -w~--G~F~VeWi~vkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF 525 (642)
+- =.|+|.| .+..||-+.++|++-+|-.++ .+=-.||...+-..||.||
T Consensus 79 ~fPAQVrf~i~~-~C~PL~E~~fk~aI~~Ny~~~----~kF~~eLs~~Qv~~L~~LF 130 (130)
T PF10539_consen 79 PFPAQVRFRIRW-DCPPLPESQFKPAIKDNYYDK----NKFRFELSHQQVRKLLSLF 130 (130)
T ss_pred ccceEEEEEEee-eeecCCHHHHHHHHHHhCCCC----CcccCcCCHHHHHHHHHhC
Confidence 22 2577877 566899999999985542221 2446899999999999987
No 8
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=33.63 E-value=1.2e+03 Score=30.52 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=13.9
Q ss_pred cccCCCcccc-ccCCCCCCCCCCCCCCCCCCc
Q 006520 47 VYGDNGSLMY-HHGYGYAPYPPYSPATSPVPT 77 (642)
Q Consensus 47 vy~dn~Sl~y-~~Gygy~pYg~Ysp~~sP~p~ 77 (642)
|+.|--.+++ +... +||.-.+-++||.+.
T Consensus 1416 ~~ld~e~l~~~~~~~--~p~~~~~~~~sp~~s 1445 (1605)
T KOG0260|consen 1416 LMLDAEKLKKGIEIP--MPWSNMSSPASPGSS 1445 (1605)
T ss_pred eeccHHhhhccCccC--CcccccCCCCCCCCC
Confidence 4555444444 2222 355545555566555
No 9
>PRK02268 hypothetical protein; Provisional
Probab=33.37 E-value=2.6e+02 Score=27.44 Aligned_cols=122 Identities=10% Similarity=0.129 Sum_probs=68.8
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchHH-HHHHHHHHHHhhcCCCCEEEEEEeC-------CCCCeeEEEEecCCCCC
Q 006520 389 KFFVIKSYSEDDVHKSIKYSVWASTPNGNK-KLDAAYQEAQQKSRSCPVFLLFSVN-------TSGQFVGLAEMAGPVDF 460 (642)
Q Consensus 389 RFFIIKS~nedNIhkSIKygVWaTTp~nnk-KLn~AF~ea~~k~~~~pVfLfFSVN-------~SG~FqG~AeM~SpVDf 460 (642)
+|.| =.-|+||+.+.++.|+|-.. |+.+ -|.+ - ....-+|++|=. .=..|.+++++++.--+
T Consensus 3 ~yWI-~v~s~~hv~~g~~~gf~qv~-hgK~apl~R----m----kpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Y 72 (141)
T PRK02268 3 RYWI-GVVSAEHVRRGVEGGFMQVC-HGKAAPLRR----M----KPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPY 72 (141)
T ss_pred ceEE-EEccHHHHHHHHhCCEEEeC-CCccchhhc----C----CCCCEEEEEeceEecCCCcccceEEEEEEEcCCceE
Confidence 4553 35679999999999999774 3332 2221 1 124667777722 34689999999986322
Q ss_pred CCCchhhccccCc-CccceeEEEeecCCCccc----cccccCCCCCCceeecCCCcccchHHHHHHHHHHh
Q 006520 461 NKNVEYWQQDKWT-GCFPVKWHIVKDVPNSLL----KHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFK 526 (642)
Q Consensus 461 ~ks~~~WqqdKw~-G~F~VeWi~vkDVPf~~l----rHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF~ 526 (642)
...+. ..|. =.++|+|+.+.++|++-| +.|++.-+=.... -.---||..+-.+.+.+.+.
T Consensus 73 q~~m~----~~f~P~Rr~v~~~~~~e~pi~pLi~~L~Fi~~k~~Wg~~f--r~g~~eI~e~Df~~I~~am~ 137 (141)
T PRK02268 73 QVEMA----PGFIPWRRDVDYYPCAETPIRPLLDHLDFTEDRKNWGYQF--RFGHFEISKHDFETIASAMT 137 (141)
T ss_pred ecccC----CCceeEEEEeeEeecCccchHHhhcccceeeCcchhhHhh--cCCcEecCHHHHHHHHHHhc
Confidence 21110 0111 135799999999998744 3444332211122 11225666665555555443
No 10
>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death. The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.
Probab=21.03 E-value=2.3e+02 Score=27.64 Aligned_cols=117 Identities=18% Similarity=0.286 Sum_probs=75.2
Q ss_pred CChhHHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchhhcccc---C
Q 006520 396 YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDK---W 472 (642)
Q Consensus 396 ~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pVfLfFSVN~SG~FqG~AeM~SpVDf~ks~~~WqqdK---w 472 (642)
+|.+-.....++.+.......-. |-+. ...+.++|||= -...++.|+=+-+|.--.+....-|..++ +
T Consensus 10 Cn~~T~~Ecf~~~lFGLP~~~~~-----~V~~--IkpG~~LFLfn--~~~r~L~GifeA~S~G~~ni~p~Af~~~~~s~f 80 (132)
T smart00767 10 CNNDTKEECFRRQLFGLPRGYRD-----FVRN--IKPGLPLFLYN--YDTRKLHGIFEATSFGGLNIDPNAFEGKKESRF 80 (132)
T ss_pred eCCCCHHHHHhcccccCChhhhh-----hhhe--eCCCCEEEEEe--cCCceeeeEEEeccCCcCCcChhHhcCCCCCcc
Confidence 34444566677777776643211 1111 12344666642 35789999999999877777777787653 2
Q ss_pred cC--ccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHh
Q 006520 473 TG--CFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFK 526 (642)
Q Consensus 473 ~G--~F~VeWi~vkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF~ 526 (642)
-- .|+|+| .+..|+-+.|++.+.+|=.+ ..+=-.||...+-+.|+.||.
T Consensus 81 PaQVrf~i~~-~C~PL~E~~f~~aI~~nY~~----~~kF~~eLs~~Qv~~L~~LF~ 131 (132)
T smart00767 81 PAQVRFRIRK-DCKPLPESEFRSAILENYDG----PSKFRFELSHAQVLRLLDLFA 131 (132)
T ss_pred CcEEEEEEee-eecCCCHHHHHHHHHHhCcC----CccccccCCHHHHHHHHHHhc
Confidence 22 245555 35678888899877666433 134468999999999999995
Done!