Query 006520
Match_columns 642
No_of_seqs 208 out of 363
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 18:08:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006520.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2149-2153//hhsearch_pdb/006520hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yud_A YTH domain-containing p 1.0 1 1 394.3 8.6 167 367-548 7-179 (180)
2 2yu6_A YTH domain-containing p 1.0 1 1 369.0 10.9 138 384-528 4-141 (141)
3 2hd9_A UPF0310 protein PH1033; 1.0 1 1 38.5 7.5 126 389-525 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 1.0 1 1 33.7 6.6 126 387-524 3-147 (147)
5 2eve_A Hypothetical protein ps 1.0 1 1 15.0 6.5 132 389-529 2-153 (157)
6 3eop_A Thymocyte nuclear prote 1.0 1 1 13.4 6.5 132 389-526 2-168 (176)
7 2jvf_A De novo protein M7; tet 1.0 1 1 13.3 0.4 15 503-517 9-23 (96)
8 4hce_A Cell division control p 1.0 1 1 13.3 -1.4 32 499-530 53-84 (152)
9 3txv_A Probable tagatose 6-pho 1.0 1 1 12.1 2.7 43 407-451 21-63 (450)
10 3goe_A DNA repair protein RAD6 1.0 1 1 12.1 4.2 47 389-441 10-56 (82)
No 1
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=394.26 Aligned_cols=167 Identities=31% Similarity=0.527 Sum_probs=156.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
Q ss_conf 55788965589899999999815999941895679987625935438760789999999988405999789999867888
Q 006520 367 ISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 446 (642)
Q Consensus 367 ~~~~~~~~qyN~~df~~~~~~ARFFIIKS~sedNIhkSIKygVWaTTp~nnkKLd~AFkea~~k~~~~pVfLfFSVN~Sg 446 (642)
....++++|||+.++.. +++|||||||++++|||+|++||||+||++||++|++||++++ +||||||||+||
T Consensus 7 ~~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~------~V~L~FSVn~Sg 78 (180)
T 2yud_A 7 GVRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR------SVILIFSVRESG 78 (180)
T ss_dssp CCCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSS------CEEEEEEETTTS
T ss_pred CHHHCCHHHCCCCCCCC--CCEEEEEEEECCHHHHHHHHHCCEEECCCCCHHHHHHHHHHCC------EEEEEEEECCCC
T ss_conf 22113620145456666--8638999972988999999876974246531799999985099------299999857877
Q ss_pred CEEEEEEECCCCCCCCCCHHHC------CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHH
Q ss_conf 7368898228888998811110------1367674101379932389864333445789998543158970014688999
Q 006520 447 QFVGLAEMAGPVDFNKNVEYWQ------QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLK 520 (642)
Q Consensus 447 qFqGvAeM~SpVDf~ks~d~Wq------qdKw~G~F~VkWi~vkDVPf~~lkHI~N~~NeNKPVt~SRDgQEIe~e~G~q 520 (642)
+|||||||+|+++++....+|+ +++|+|.|+|+||+++||||..++||+|+|||||||+++||||||++++|++
T Consensus 79 ~F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~ 158 (180)
T 2yud_A 79 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQ 158 (180)
T ss_dssp EEEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHH
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCCHHHHHCCCCCCCCCEEEECCCCEECCHHHHHH
T ss_conf 27899997247888988720214676323223895677999930578466400416446897662278988838899999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9998731999765143204029999999
Q 006520 521 LIKIFKDHPSKTCILDDFGFYETRQKTI 548 (642)
Q Consensus 521 LLkIF~~~~~~tSIlDDF~~Ye~rek~~ 548 (642)
||+||+.+ +++++|+.++|..
T Consensus 159 L~~lf~~~-------~~~~~~~~~~~~~ 179 (180)
T 2yud_A 159 LCLLFPPD-------ESIDLYQVIHKMR 179 (180)
T ss_dssp HHHHSCCC-------SSSCSHHHHHHHH
T ss_pred HHHHCCCC-------CCCCHHHHHHHHC
T ss_conf 99851427-------6864899877435
No 2
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=369.04 Aligned_cols=138 Identities=28% Similarity=0.552 Sum_probs=132.5
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCC
Q ss_conf 99981599994189567998762593543876078999999998840599978999986788873688982288889988
Q 006520 384 EYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN 463 (642)
Q Consensus 384 ~~~~ARFFIIKS~sedNIhkSIKygVWaTTp~nnkKLd~AFkea~~k~~~~pVfLfFSVN~SgqFqGvAeM~SpVDf~ks 463 (642)
...++|||||||++++|||+|++||||+||++||++|++||++++ +||||||||+||+|||||||+|++++ ..
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~------~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~ 76 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------IVYLVFSVQGSGHFQGFSRMSSEIGR-EK 76 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSS------CEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred CCCCCEEEEEEECCHHHHHHHHHCCEEECCCCCHHHHHHHHHCCC------CEEEEEEECCCCEEEEEEEECCCCCC-CC
T ss_conf 999838999974988999999876971036742799999985279------69999997787728899997245777-77
Q ss_pred CHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 11110136767410137993238986433344578999854315897001468899999987319
Q 006520 464 VEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 528 (642)
Q Consensus 464 ~d~WqqdKw~G~F~VkWi~vkDVPf~~lkHI~N~~NeNKPVt~SRDgQEIe~e~G~qLLkIF~~~ 528 (642)
..+|++++|+|.|+|+||+++||||..++||+|++||||||+++||||||++++|++||+||+++
T Consensus 77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~~ 141 (141)
T 2yu6_A 77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL 141 (141)
T ss_dssp CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGTC
T ss_pred CCCCCCCCCCCCEEEEEEEEECCCHHHHHHCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHHC
T ss_conf 76344454489678899993037858951012545799757757897780889999999988649
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=1.00 E-value=1 Score=38.48 Aligned_cols=126 Identities=12% Similarity=0.185 Sum_probs=79.7
Q ss_pred EEEEEECCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCC--------CCEEEEEEECCCCCC
Q ss_conf 599994189567998762593543876078999999998840599978999986788--------873688982288889
Q 006520 389 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTS--------GQFVGLAEMAGPVDF 460 (642)
Q Consensus 389 RFFIIKS~sedNIhkSIKygVWaTTp~nnkKLd~AFkea~~k~~~~pVfLfFSVN~S--------gqFqGvAeM~SpVDf 460 (642)
+|.++|| +.|++....+.++|-. .+..+..-.+ - ..+...||++-+.. ..|.|+||.++..-.
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~---m----k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSR---V----KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTT---C----CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred CEEEEEC-CHHHHHHHHHCCCCCC-CHHHHHHHHH---C----CCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCEE
T ss_conf 5678847-9999999887185305-9899999974---7----8998899997153345777778658999999077481
Q ss_pred CCCCHHHCCCCC-----CCCCCEEEEEEECCCCCCCCCCCCCCCCCC---CEEE-CCCCCCCCHHHHHHHHHHH
Q ss_conf 988111101367-----674101379932389864333445789998---5431-5897001468899999987
Q 006520 461 NKNVEYWQQDKW-----TGCFPVKWHIVKDVPNSLLKHITLENNENK---PVTN-SRDTQEIKLEQGLKLIKIF 525 (642)
Q Consensus 461 ~ks~d~WqqdKw-----~G~F~VkWi~vkDVPf~~lkHI~N~~NeNK---PVt~-SRDgQEIe~e~G~qLLkIF 525 (642)
+.+. +|-..+| --...|+++.+..|+...++. .+.+-.|| -... -+-.++|..+....+|+.+
T Consensus 73 D~t~-~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 73 DFSR-IFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCCC-CSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHHHC
T ss_pred CCCC-CCCCCCCCCCCEEEEEECEEEEECCCCHHHHHH-HHHHHCCCCCCCCEECCCCCEECCHHHHHHHHHHH
T ss_conf 8976-677764446871578867798633476788775-44541153333523213696186999999999965
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=33.73 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=76.1
Q ss_pred CCEEEEEECCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEC------CCCCEEEEEEECCCCCC
Q ss_conf 815999941895679987625935438760789999999988405999789999867------88873688982288889
Q 006520 387 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVDF 460 (642)
Q Consensus 387 ~ARFFIIKS~sedNIhkSIKygVWaTTp~nnkKLd~AFkea~~k~~~~pVfLfFSVN------~SgqFqGvAeM~SpVDf 460 (642)
..+|.|+||. .+++...++.|+|-. .+..+.+-. .- ..+...||+... .-..|.|+|+.++..-.
T Consensus 3 ~m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn~lr---~M----k~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~ 73 (147)
T 2p5d_A 3 LMAYWLCITN-EDNWKVIKEKKIWGV-AERYKNTIN---KV----KVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYK 73 (147)
T ss_dssp CCCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHHHHT---TC----CTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEE
T ss_pred CCCCEEEECC-HHHHHHHHHCCEEEC-CHHHHHHHH---HC----CCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 3132012138-999999997485026-999999997---48----89888999872335898878778999999423141
Q ss_pred CC-----CCHHHCCCCCCCCCCEEEEEE--ECCCCCCCCC----CCCC--CCCCCCEEECCCCCCCCHHHHHHHHHH
Q ss_conf 98-----811110136767410137993--2389864333----4457--899985431589700146889999998
Q 006520 461 NK-----NVEYWQQDKWTGCFPVKWHIV--KDVPNSLLKH----ITLE--NNENKPVTNSRDTQEIKLEQGLKLIKI 524 (642)
Q Consensus 461 ~k-----s~d~WqqdKw~G~F~VkWi~v--kDVPf~~lkH----I~N~--~NeNKPVt~SRDgQEIe~e~G~qLLkI 524 (642)
+. ...+...+..--..+|+++.. ..|+...++. |.+. |.+ .-+..+ -++|..+.-..+|++
T Consensus 74 D~t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 74 DSSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CCCCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS--EEEECHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHH-HHHCCC--CEECCHHHHHHHHHC
T ss_conf 88544767667677998049999997423886379999866653145314678-874189--617799999999859
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=1.00 E-value=1 Score=14.98 Aligned_cols=132 Identities=14% Similarity=0.317 Sum_probs=73.9
Q ss_pred EEEEEEC----CCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEC-CCCCEEEEEEECCCC-----
Q ss_conf 5999941----895679987625935438760789999999988405999789999867-888736889822888-----
Q 006520 389 KFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPV----- 458 (642)
Q Consensus 389 RFFIIKS----~sedNIhkSIKygVWaTTp~nnkKLd~AFkea~~k~~~~pVfLfFSVN-~SgqFqGvAeM~SpV----- 458 (642)
+|.++|| ++.||+.. .+...|--.++-..|-. .++. ..+ ...||+--| ......|+||.++..
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqArN~--mr~M---k~G-D~~ffYHS~c~~pgIvGi~eVv~e~ypD~t 74 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQARNF--LRTM---AEG-DEFFFYHSSCPEPGIAGIGKIVKTAYPDPT 74 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHHHH--HHHC---CTT-CEEEEEECSSSSCEEEEEEEEEEEEEECGG
T ss_pred CEEEEECCCCEEEHHHHHC-CCCEECCCCCCHHHHHH--HHHC---CCC-CEEEEEECCCCCCEEEEEEEEEECCCCCCC
T ss_conf 5566832897024989855-89573379454999999--9854---889-989999648999889999999570578850
Q ss_pred CCCCCCHHHCC------CCCCCCCCEEEEEE--ECCCCCCCCCCCCCCCCCCCEEE-CC-CCCCCCHHHHHHHHHHHHCC
Q ss_conf 89988111101------36767410137993--23898643334457899985431-58-97001468899999987319
Q 006520 459 DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTN-SR-DTQEIKLEQGLKLIKIFKDH 528 (642)
Q Consensus 459 Df~ks~d~Wqq------dKw~G~F~VkWi~v--kDVPf~~lkHI~N~~NeNKPVt~-SR-DgQEIe~e~G~qLLkIF~~~ 528 (642)
.|+....||.. -+|. ...|+-+.. +.|+-..+|... ++.+..-|.. +| -.|.|..+.-..+|++=.++
T Consensus 75 ~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~~~~ 152 (157)
T 2eve_A 75 ALDPDSHYHDAKATTEKNPWS-ALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILALRLEH 152 (157)
T ss_dssp GGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHHHC--
T ss_pred CCCCCCCCCCCCCCCCCCCEE-EEEEEEEEECCCCCCHHHHHCCC-CCCCCCEEECCCCCCCEECCHHHHHHHHHHHHHH
T ss_conf 026667675866677799778-99999824549952799986593-6045805611687672535999999999976643
Q ss_pred C
Q ss_conf 9
Q 006520 529 P 529 (642)
Q Consensus 529 ~ 529 (642)
-
T Consensus 153 ~ 153 (157)
T 2eve_A 153 H 153 (157)
T ss_dssp -
T ss_pred H
T ss_conf 0
No 6
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=1.00 E-value=1 Score=13.39 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=69.6
Q ss_pred EEEEEEC-------------CCHHHHHHH-HHCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf 5999941-------------895679987-62593543876078999999998840599978999986788873688982
Q 006520 389 KFFVIKS-------------YSEDDVHKS-IKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEM 454 (642)
Q Consensus 389 RFFIIKS-------------~sedNIhkS-IKygVWaTTp~nnkKLd~AFkea~~k~~~~pVfLfFSVN~SgqFqGvAeM 454 (642)
+|.++|| |+.||+... .+...|--..+-..|-. .|+. .-+..||+.-|...--...|+||.
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~--mR~M---k~GD~~fFYHSnck~pgIvGi~eV 76 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNF--LRAM---KLGEEAFFYHSNCKEPGIAGLMKI 76 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHH--HHHC---CTTCEEEEEECCSSSCEEEEEEEE
T ss_pred CEEEEEECCCCCCCCCCCCEEEHHHHHHCCCCCCCCCCCCCHHHHHH--HHHC---CCCCEEEEEECCCCCCEEEEEEEE
T ss_conf 60215637886334576652709999755489874468066999999--9856---788889999627899847899999
Q ss_pred CCCC-----CCCCCCHHHCC------CCCCCCCCEEEEEE--ECCCCCCCCCCC-------CCCCCCCCEEECC-CCCCC
Q ss_conf 2888-----89988111101------36767410137993--238986433344-------5789998543158-97001
Q 006520 455 AGPV-----DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHIT-------LENNENKPVTNSR-DTQEI 513 (642)
Q Consensus 455 ~SpV-----Df~ks~d~Wqq------dKw~G~F~VkWi~v--kDVPf~~lkHI~-------N~~NeNKPVt~SR-DgQEI 513 (642)
+... .|+....||.. -+|. ...|+.+.. +.|+-..+|... -++.+..-|+.+| -.|-|
T Consensus 77 v~e~ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PV 155 (176)
T 3eop_A 77 VKEAYPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPL 155 (176)
T ss_dssp EEEEEECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCEE-EEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCEEC
T ss_conf 513536874457777787866767799878-9999983225985269999608010444565513584010586672335
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 4688999999873
Q 006520 514 KLEQGLKLIKIFK 526 (642)
Q Consensus 514 e~e~G~qLLkIF~ 526 (642)
..+.-..+|++-+
T Consensus 156 t~~ew~~I~~l~~ 168 (176)
T 3eop_A 156 TQEEFDFVLSLEE 168 (176)
T ss_dssp CHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999876
No 7
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=1.00 E-value=1 Score=13.34 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=11.9
Q ss_pred CEEECCCCCCCCHHH
Q ss_conf 543158970014688
Q 006520 503 PVTNSRDTQEIKLEQ 517 (642)
Q Consensus 503 PVt~SRDgQEIe~e~ 517 (642)
.+++.||||||+.++
T Consensus 9 tikiqrdgqeieidi 23 (96)
T 2jvf_A 9 TIKIQRDGQEIEIDI 23 (96)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEEECCEEEEEEE
T ss_conf 999961780899999
No 8
>4hce_A Cell division control protein 13; OB fold, oligonucleotide/oligosaccharide binding fold; 2.30A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=13.31 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=25.8
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99985431589700146889999998731999
Q 006520 499 NENKPVTNSRDTQEIKLEQGLKLIKIFKDHPS 530 (642)
Q Consensus 499 NeNKPVt~SRDgQEIe~e~G~qLLkIF~~~~~ 530 (642)
.-++++.-..+|.||--....+++++|..-.+
T Consensus 53 ~p~~~lIPnvNCIEi~V~~~~ei~elFG~Lv~ 84 (152)
T 4hce_A 53 VPDKVLVPGVNCIEIVIPTRERICELFGVLNC 84 (152)
T ss_dssp SCCCCBCBTTTBEEEEECCHHHHHHHHCGGGC
T ss_pred CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHC
T ss_conf 87642248997288885577999998747616
No 9
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=1.00 E-value=1 Score=12.12 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=22.8
Q ss_pred CCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEE
Q ss_conf 593543876078999999998840599978999986788873688
Q 006520 407 YSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGL 451 (642)
Q Consensus 407 ygVWaTTp~nnkKLd~AFkea~~k~~~~pVfLfFSVN~SgqFqGv 451 (642)
++|-+.-..|...+.++++.+++.. .||+|-.|-|.-.+|-||
T Consensus 21 ~gi~av~~~n~e~i~Ail~aAee~~--sPVIIe~t~~qv~~~gGY 63 (450)
T 3txv_A 21 RGIPSICSAHPLVIEAAMLRAHREK--APVLIEATCNQVNQDGGY 63 (450)
T ss_dssp CCEEEECCCCHHHHHHHHHHHHHSC--SCEEEEEETTTSCTTCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHC--CCEEEECCHHHHHHCCCC
T ss_conf 2799857699999999999999829--999999273268652897
No 10
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=1.00 E-value=1 Score=12.05 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=33.2
Q ss_pred EEEEEECCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 59999418956799876259354387607899999999884059997899998
Q 006520 389 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFS 441 (642)
Q Consensus 389 RFFIIKS~sedNIhkSIKygVWaTTp~nnkKLd~AFkea~~k~~~~pVfLfFS 441 (642)
.-.++||.--+|++.+|+ ......+|-+||+++++.+....|.|.|-
T Consensus 10 ~~~~~~~~~~~dl~f~I~------~~t~v~kLi~ayc~~~~I~~~~~IrllFD 56 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIP------VDFTVKDLIKRYCTEVKISFHERIRLEFE 56 (82)
T ss_dssp EEEEEEESSSCCEEEEEE------TTSBHHHHHHHHHHHHTCCCCTTCEEEET
T ss_pred HHHHHHCCCCCCEEEEEC------CCCCHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 888664067887589954------89979999999999719996762899975
Done!