Query 006521
Match_columns 642
No_of_seqs 238 out of 1683
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 18:24:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006521.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2149-2153//hhsearch_pdb/006521hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u3d_A Cryptochrome 1 apoprote 1.0 1 1 1029.2 44.5 497 4-502 12-509 (509)
2 3fy4_A 6-4 photolyase; DNA rep 1.0 1 1 993.2 43.4 477 1-489 1-501 (537)
3 3tvs_A Cryptochrome-1; circadi 1.0 1 1 970.7 36.9 474 4-486 4-513 (538)
4 2wq7_A RE11660P; lyase-DNA com 1.0 1 1 963.2 43.8 476 1-490 24-526 (543)
5 1np7_A DNA photolyase; protein 1.0 1 1 953.9 43.9 469 1-482 3-484 (489)
6 1owl_A Photolyase, deoxyribodi 1.0 1 1 942.0 42.4 462 1-486 1-473 (484)
7 1dnp_A DNA photolyase; DNA rep 1.0 1 1 941.2 37.3 458 5-486 2-469 (471)
8 2j4d_A Cryptochrome 3, cryptoc 1.0 1 1 916.8 38.8 462 3-483 39-516 (525)
9 2e0i_A 432AA long hypothetical 1.0 1 1 909.5 35.1 425 5-486 2-430 (440)
10 2j07_A Deoxyribodipyrimidine p 1.0 1 1 865.0 41.0 418 4-486 2-419 (420)
No 1
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=1.00 E-value=1 Score=1029.19 Aligned_cols=497 Identities=61% Similarity=1.164 Sum_probs=438.1
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
Q ss_conf 93899866898887999999999489949999967995474587520499999999999999995699089998782699
Q 006521 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLA 83 (642)
Q Consensus 4 ~~~IvWFRrDLRl~DNpAL~~A~~~~~vlpvfI~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~~~~~ 83 (642)
+.+|||||||||++||+||.+|++.++|+||||+||.+++.+.+++.+++||++||++|+++|+++|++|++++++++.+
T Consensus 12 ~~~l~WfrrDLRl~DN~aL~~A~~~~~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~ 91 (509)
T 1u3d_A 12 GCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVA 91 (509)
T ss_dssp -CEEEEESSCCCSTTCHHHHHHHHHSCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 80899979987610229999998679989999977301045784068999999999999999997799189976899899
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99999997199499990103905689999999986645938999729812459420111487641428999999753489
Q 006521 84 ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME 163 (642)
Q Consensus 84 ~L~~l~~~~~i~~V~~~~~~~p~~~~RD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~~~~~~ 163 (642)
+|.+++++++|++|+++++|+|+++.||++|+++|.+.||+++.+++++|++|+++.+..|++|++|++||++++..+..
T Consensus 92 ~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftpf~r~~~~~~~~ 171 (509)
T 1u3d_A 92 SLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYD 171 (509)
T ss_dssp HHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999998599889990546899999999999999876967999778789768756677999714479999999846479
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 88-77997421247899999994348987200112210038998965346999999999988632210015899999887
Q 006521 164 PA-SILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSL 242 (642)
Q Consensus 164 ~~-p~~~p~~~~p~~~~~~~~~le~lg~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~tS~ 242 (642)
+. +.++|..+.+ ..+..++++.+++.+.............|+|||++|+++|+.|+++++..|..+||.|+.++||+
T Consensus 172 ~~~~~~~p~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~Rd~p~~~~tS~ 249 (509)
T 1u3d_A 172 PESPLLPPKKIIS--GDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249 (509)
T ss_dssp CCCCCCCCSCCCB--TTGGGSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTSCC
T ss_pred CCCCCCCCCCCCC--CCCCCCCHHHHCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 8877787433576--55688996670777644442133203567875799999999999987776532047888778877
Q ss_pred CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 71333169888999999999999998764203794019999998999999999898288888885422467999989956
Q 006521 243 LSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLG 322 (642)
Q Consensus 243 LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fi~eL~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d~~ 322 (642)
|||||+|||||||+|++++..++..+..++...+.++++.|++||+||||++++++++|.+.+.+++++++.+||..|++
T Consensus 250 LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~~~~~~p~~~~~~~~~~~~~lpW~~d~~ 329 (509)
T 1u3d_A 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDEN 329 (509)
T ss_dssp CHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHH
T ss_pred CCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCHH
T ss_conf 77415069877999999999975431013556662168999989899999999998396633444345640488867869
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 59877639999599999999999827646488999999998605999648899999852525678881102555178999
Q 006521 323 NFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPD 402 (642)
Q Consensus 323 ~~~aW~~G~TG~PlVDA~MRqL~~tGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~ag~g~d 402 (642)
.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+++|+|||||+||+|+|
T Consensus 330 ~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~G~~~F~~~liD~D~a~n~g~wqw~ag~g~d 409 (509)
T 1u3d_A 330 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPD 409 (509)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC
T ss_conf 99999808989875999999999968733899999999999745889537999999873047733166889998657878
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98843324911113556982015653030001899885458999994579881996789999477796899999999999
Q 006521 403 GHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIF 482 (642)
Q Consensus 403 ~~~~~Ri~NP~~q~~k~Dp~G~yIrrwvPEL~~lp~~~Ih~Pw~~~~~~~~~a~~~~g~~YP~PIvd~~~ar~~~~~~~~ 482 (642)
++||||||||++|++||||+|+|||||||||+++|+++||+||++|..+|+.+||.+|.+||.|||||+++|++++++|+
T Consensus 410 ~~py~RifNP~~Q~~kfDp~G~yIrrwvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~ 489 (509)
T 1u3d_A 410 SREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALS 489 (509)
T ss_dssp CCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHCCCCCHHHHHHCHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 77655516898998741978366888697754466000368544886778872666578898777799999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCC
Q ss_conf 96733886332027998642
Q 006521 483 KMWEMEAADNAMDSNGTNEV 502 (642)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ 502 (642)
++++..++.+++..+|.+|+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~ 509 (509)
T 1u3d_A 490 QMWQLEAASRAAIENGSEEG 509 (509)
T ss_dssp HHHHHHCC------------
T ss_pred HHHHHHHHHHHHHHCCCCCC
T ss_conf 98751788988751585579
No 2
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=993.20 Aligned_cols=477 Identities=28% Similarity=0.473 Sum_probs=414.6
Q ss_pred CCC-CCEEEEECCCCCCCCCHHHHHHHHCC-CEEEEEEECCCCCCCC---------CCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999-93899866898887999999999489-9499999679954745---------875204999999999999999956
Q 006521 1 MGG-NRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQF---------YPGRVSRWWLKQSLSYLGQSLKSL 69 (642)
Q Consensus 1 m~~-~~~IvWFRrDLRl~DNpAL~~A~~~~-~vlpvfI~dP~~~~~~---------~~~~~~r~FLlesL~dL~~~L~~l 69 (642)
|+| +.+||||||||||+||+||.+|++.+ +|+||||+||.++... ..+..+.+||++||++|+++|+++
T Consensus 1 ~~~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~ 80 (537)
T 3fy4_A 1 MATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKL 80 (537)
T ss_dssp ---CCEEEEEESSCCCSTTCHHHHHHHTTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99887079994888651021999999966997799998071442234322223456678999999999999999999985
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCC-CCCCC
Q ss_conf 99089998782699999999971994999901039056899999999866459389997298124594201114-87641
Q 006521 70 GAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDER-GHAFT 148 (642)
Q Consensus 70 G~~L~v~~g~~~~~~L~~l~~~~~i~~V~~~~~~~p~~~~RD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~-g~~~~ 148 (642)
|++|+|++| ++.++|.+++++++|++|+++++|+|+++.||++|+++|++.||.++++++++|++|+++.+.. |++|.
T Consensus 81 G~~L~v~~G-~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~y~ 159 (537)
T 3fy4_A 81 GSRLLVFKG-EPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPL 159 (537)
T ss_dssp TCCCEEEES-CHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCS
T ss_pred CCCEEEEEC-CHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECHHHCCCCCCCCCCC
T ss_conf 994699977-8899999999973999899916636889999999999988769869996487797466601689999887
Q ss_pred CHHHHHHHHHHCCCCCCCC-CCCCCCCCCC-----CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4289999997534898877-9974212478-----999999943489872001122100389989653469999999999
Q 006521 149 TFDAYWDKCLQMQMEPASI-LPPWRLVQAA-----GTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVE 222 (642)
Q Consensus 149 ~f~~f~~~~~~~~~~~~p~-~~p~~~~p~~-----~~~~~~~le~lg~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~ 222 (642)
+|++|++++......+.|. .+|..+.+.. .....++++++++...... ....|+|||++|+++|+.|+.
T Consensus 160 vftpf~k~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~-----~~~~~~~Ge~~A~~~L~~Fl~ 234 (537)
T 3fy4_A 160 SYQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQA-----DWTPFRGGESEALKRLTKSIS 234 (537)
T ss_dssp SHHHHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCTTTTTCCGGGSS-----CCCSCCCSHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHHH
T ss_conf 647899999862577677777633478852113234445776776388865544-----457889639999999999984
Q ss_pred H--HHHHHHHCCCCCC---CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8--8632210015899---9998877133316988899999999999999876420379401999999899999999989
Q 006521 223 Q--HLLRYYKNRQKLG---GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLC 297 (642)
Q Consensus 223 ~--~l~~Y~~~Rd~~~---~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fi~eL~WREf~~~l~ 297 (642)
+ .+..|+..||.|. .++||+|||||+|||||||+|++.+.... +.......+++.|++||+|||||++++
T Consensus 235 ~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~-----~~~~~~~~~~~~f~~eL~WRef~~~~~ 309 (537)
T 3fy4_A 235 DKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIY-----KDVKKHTSPPVSLLGQLLWREFFYTTA 309 (537)
T ss_dssp CHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHH-----HTTSCCCCTTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHH-----HHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 743776645313574225788871677777189758999999999998-----623665322899999999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCCCCHHHHHH
Q ss_conf 8288888885422467999989956598776399995999999999998276464889999999986-059996488999
Q 006521 298 FNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK-VLLLPWRWGMKY 376 (642)
Q Consensus 298 ~~~P~~~~~~~~~~~~~~~W~~d~~~~~aW~~G~TG~PlVDA~MRqL~~tGwmHnr~Rm~VAsFLtk-~L~idWr~G~~~ 376 (642)
+++|.+...++...+..++|..|++.|++|++|+||||||||+||||++|||||||+|||||||||| +|+||||+|++|
T Consensus 310 ~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~vDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~ 389 (537)
T 3fy4_A 310 FGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDV 389 (537)
T ss_dssp HTCTTTTSSTTCTTSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHH
T ss_pred HHCCCHHCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 97945101267845532871002679999980899988999999999996850499999999999997408894789999
Q ss_pred HHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 99852525678881102555178999988433249111135569820156530300018998854589999945798819
Q 006521 377 FWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAG 456 (642)
Q Consensus 377 F~~~LiD~D~a~N~~~Wqw~ag~g~d~~~~~Ri~NP~~q~~k~Dp~G~yIrrwvPEL~~lp~~~Ih~Pw~~~~~~~~~a~ 456 (642)
|+++|||||+++|+|||||+||||+|+. |||||||++|++||||+|+|||||||||+++|+++||+||++|..+|+++|
T Consensus 390 F~~~liD~D~a~n~g~Wqw~ag~g~d~~-~fRifNP~~Q~~kfDp~G~yIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~g 468 (537)
T 3fy4_A 390 FERLLIDSDWAINNGNWMWLSCSSFFYQ-FNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKAN 468 (537)
T ss_dssp HHHHCTTCCHHHHHHHHHHHTTSSSCCC-TTCCCCTTTTGGGTCTTCHHHHHHCGGGTTCCTTTTTCGGGSCHHHHHHHT
T ss_pred HHHHCCCCCCCCCHHHHHHHCCCCCCCC-CCCCCCHHHHHHHHCCCCHHHHHHCHHHCCCCHHHHCCCCCCCHHHHHHCC
T ss_conf 9987346650017576340206677765-350108889878758885279985975327997762780219988998617
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 967899994777968999999999999673388
Q 006521 457 VELGLNYPKPIIDLDLGRERLTQAIFKMWEMEA 489 (642)
Q Consensus 457 ~~~g~~YP~PIvd~~~ar~~~~~~~~~~~~~~~ 489 (642)
|++|.+||.|||||+++|++|+++|++..+.-+
T Consensus 469 ~~~g~~YP~PIVdh~~ar~~a~~~~~~~~~~~~ 501 (537)
T 3fy4_A 469 CIVGKDYPKPMVLHDSASKECKRKMGEAYALNK 501 (537)
T ss_dssp CCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 765789998777899999999999999999987
No 3
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=1.00 E-value=1 Score=970.70 Aligned_cols=474 Identities=24% Similarity=0.411 Sum_probs=407.0
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHCC----CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCEEEE
Q ss_conf 93899866898887999999999489----9499999679954745875204999999999999999956---9908999
Q 006521 4 NRTIVWFRRDLRIEDNPALAAAARDG----SVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSL---GAELVLF 76 (642)
Q Consensus 4 ~~~IvWFRrDLRl~DNpAL~~A~~~~----~vlpvfI~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~l---G~~L~v~ 76 (642)
+.+||||||||||+||+||.+|++.+ +|+||||+||.+++....+..+.+||++||.+|+++|+++ |++|+|+
T Consensus 4 ~~~lvWFRrDLRl~DN~AL~~A~~~~~~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v~ 83 (538)
T 3tvs_A 4 GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVF 83 (538)
T ss_dssp CEEEEEESSCCCSSSCHHHHTTTGGGTTTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHGGGSCSSSSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 75899957886501239999999717778977999964834430578778999999999999999999864289858999
Q ss_pred ECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCC-CCCCCCHHHHHH
Q ss_conf 8782699999999971994999901039056899999999866459389997298124594201114-876414289999
Q 006521 77 KTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDER-GHAFTTFDAYWD 155 (642)
Q Consensus 77 ~g~~~~~~L~~l~~~~~i~~V~~~~~~~p~~~~RD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~-g~~~~~f~~f~~ 155 (642)
+| ++.++|.+++++++|++|+++++|+|++++||++|+++|++.||.++++++++|++|++|.+.+ |.+|.+|++|++
T Consensus 84 ~G-~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~f~~ 162 (538)
T 3tvs_A 84 EG-EPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLH 162 (538)
T ss_dssp ES-CHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTTHHHHHTTTSCCCSHHHHHH
T ss_pred EC-CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECHHHCCCCCCCCCCCCHHHHHH
T ss_conf 68-88999999999759998998167788899999999998876795489966988877423056889988733199999
Q ss_pred HHHHCCCCCCCCCCCCC--C----CCCCC--C----CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99753489887799742--1----24789--9----99999434898720011221003899896534699999999998
Q 006521 156 KCLQMQMEPASILPPWR--L----VQAAG--T----IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQ 223 (642)
Q Consensus 156 ~~~~~~~~~~p~~~p~~--~----~p~~~--~----~~~~~le~lg~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~ 223 (642)
++......+.|.+.|.. + .|... . ...++++++++..... .......|+|||++|+++|+.|+..
T Consensus 163 ~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~l~~~~~~~---~~~~~~~~~~Ge~~A~~~L~~Fl~~ 239 (538)
T 3tvs_A 163 TVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNM---GFLAKINWRGGETQALLLLDERLKV 239 (538)
T ss_dssp HHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSSCCCTTTTSCCCCCS---SCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9986078878888842001454568842111212245789877728985212---3455678897799999999999876
Q ss_pred ----HHHHHHHCCCCCC--CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHH
Q ss_conf ----8632210015899--999887713331698889999999999999987642037-------940199999989999
Q 006521 224 ----HLLRYYKNRQKLG--GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFE-------GKESVTFFLRAMGLR 290 (642)
Q Consensus 224 ----~l~~Y~~~Rd~~~--~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~-------~~~s~~~fi~eL~WR 290 (642)
.+..|++.|+.+. ..+||+|||||+|||||||+|++.+.... ..... ...+++.|++||+||
T Consensus 240 ~~~~~l~~y~~~r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~f~~eL~WR 314 (538)
T 3tvs_A 240 EQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLF-----KNVQLRACVRGVQMTGGAHITGQLIWR 314 (538)
T ss_dssp HHHHHHSCCCCTTTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHHT-----CSSSCCCCCSSSCCTTTTTTHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHH-----HHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 315367541400137543458974787788188768999999999998-----630123322245641689999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCC
Q ss_conf 99999898288888885422467999989-956598776399995999999999998276464889999999986-0599
Q 006521 291 EYSRYLCFNFPFTHERPLLSNLKYFPWHA-DLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK-VLLL 368 (642)
Q Consensus 291 Ef~~~l~~~~P~~~~~~~~~~~~~~~W~~-d~~~~~aW~~G~TG~PlVDA~MRqL~~tGwmHnr~Rm~VAsFLtk-~L~i 368 (642)
||++++++++|.+...++...++.++|.. |++.|++|++|+||||||||+||||++|||||||+|||||||||| +|+|
T Consensus 315 ef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~aW~~G~TG~P~VDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~i 394 (538)
T 3tvs_A 315 EYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQ 394 (538)
T ss_dssp HHHHHHHHHSSCTTSSSSCSSCCCCCCCCCCSSHHHHHHTTCSSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTTTTCC
T ss_pred HHHHHHHHHCCCHHHCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999999692433114784553187554598999999808999879999999999967714899999999999863088
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 964889999985252567888110255517899-9988433249111135569820156530300018998854589999
Q 006521 369 PWRWGMKYFWDTLLDADLECDILGWQYISGSLP-DGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDA 447 (642)
Q Consensus 369 dWr~G~~~F~~~LiD~D~a~N~~~Wqw~ag~g~-d~~~~~Ri~NP~~q~~k~Dp~G~yIrrwvPEL~~lp~~~Ih~Pw~~ 447 (642)
|||+|++||+++|||||+++|+|||||+||+|+ |+.||||||||++|++||||+|+|||||||||+++|+++||+||++
T Consensus 395 dWr~G~~~F~~~llD~D~a~n~g~Wqw~ag~g~Dd~~pyfRifNP~~Q~~kfDp~G~YIrrwvPEL~~lp~~~Ih~Pw~~ 474 (538)
T 3tvs_A 395 SWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRM 474 (538)
T ss_dssp CHHHHHHHHHHHCTTCCHHHHHHHHHHHSCCCSSCCCTHHHHCSTTTHHHHSCTTCTTGGGTCGGGSSSCCSSCCSHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHCHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHCCCCCHHHHHCHHHCCCCHHHHCCCCCC
T ss_conf 96689999999805674433415343220578767787345668988988729996518885965317987764695448
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 945798819967899994777968999999999999673
Q 006521 448 PPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFKMWE 486 (642)
Q Consensus 448 ~~~~~~~a~~~~g~~YP~PIvd~~~ar~~~~~~~~~~~~ 486 (642)
|..+|+++||++|.+||.|||||+++|++++++|+++++
T Consensus 475 ~~~~~~~~~~~~g~~YP~PIVdh~~ar~~al~~~~~~~~ 513 (538)
T 3tvs_A 475 SAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRN 513 (538)
T ss_dssp HTTHHHHSSCCSSSSSCCCSSCSHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 978998707765789997778899999999999999987
No 4
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=1.00 E-value=1 Score=963.19 Aligned_cols=476 Identities=26% Similarity=0.413 Sum_probs=411.1
Q ss_pred CCCC-CE-EEEECCCCCCCCCHHHHHHHHCC-C------EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999-38-99866898887999999999489-9------49999967995474587520499999999999999995699
Q 006521 1 MGGN-RT-IVWFRRDLRIEDNPALAAAARDG-S------VFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGA 71 (642)
Q Consensus 1 m~~~-~~-IvWFRrDLRl~DNpAL~~A~~~~-~------vlpvfI~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~ 71 (642)
|.|+ .+ |||||||||++||+||.+|++.+ + |+||||+||.+++....+..+.+||++||++|+++|+++|+
T Consensus 24 ~~~~~~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~ 103 (543)
T 2wq7_A 24 MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNS 103 (543)
T ss_dssp -CTTCEEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 03668628999599867050899999997376546787189999977245415677889999999999999999998799
Q ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCC-CCCCCCCCH
Q ss_conf 0899987826999999999719949999010390568999999998664593899972981245942011-148764142
Q 006521 72 ELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYD-ERGHAFTTF 150 (642)
Q Consensus 72 ~L~v~~g~~~~~~L~~l~~~~~i~~V~~~~~~~p~~~~RD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~-~~g~~~~~f 150 (642)
+|++++| ++.++|.++++++++++|+++.+|+|+++.||+.|+++|++.||+++.+++++|++|+++.. ..|++|.+|
T Consensus 104 ~L~v~~g-~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~~v~~~~~g~~~~vf 182 (543)
T 2wq7_A 104 RLFVVRG-KPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITY 182 (543)
T ss_dssp CCEEEES-CHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSH
T ss_pred EEEEEEC-CHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCCCCCCH
T ss_conf 5899967-889999999998599989993676877999999999988875987999669788772100456699997648
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCC--CC--C--------CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 89999997534898877997421247--89--9--------999994348987200112210038998965346999999
Q 006521 151 DAYWDKCLQMQMEPASILPPWRLVQA--AG--T--------IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLT 218 (642)
Q Consensus 151 ~~f~~~~~~~~~~~~p~~~p~~~~p~--~~--~--------~~~~~le~lg~~~~~~~~~~~~~~~~~~gGe~~A~~~L~ 218 (642)
++|++++......+ |...|..+.+. +. . ...++++++++... ......|+|||++|+++|+
T Consensus 183 t~F~~~~~~~~~~~-p~~~p~~~~~~~~p~~~~~~~~~~~~~~~p~l~~l~~~~~------~~~~~~~~~Ge~~A~~~L~ 255 (543)
T 2wq7_A 183 QKFLGIVEQLKVPK-VLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPE------ELGPNKFPGGETEALRRME 255 (543)
T ss_dssp HHHHHHHTTSCCCC-CCCCCCCCSSCCCCCCCHHHHHCTTTTSCCCHHHHCSCGG------GCCCCCSCCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC-CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC------CCCCCCCCCCHHHHHHHHH
T ss_conf 99999988706888-9886000365556542233422223457888777288854------3556888987999999999
Q ss_pred HHHHHH--HHHHHHCCCCCCC--CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999988--6322100158999--998877133316988899999999999999876420379401999999899999999
Q 006521 219 EFVEQH--LLRYYKNRQKLGG--NSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSR 294 (642)
Q Consensus 219 ~Fl~~~--l~~Y~~~Rd~~~~--~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fi~eL~WREf~~ 294 (642)
.|++++ +..|+..||.|.. ++||+|||||||||||||+|++++...+ ++.....++++.|++||+||||++
T Consensus 256 ~Fl~~~~~l~~Y~~~Rd~p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~-----~~~~~~~~~~~~f~~eL~WREf~~ 330 (543)
T 2wq7_A 256 ESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEII-----KRQPKHSQPPVSLIGQLMWREFYY 330 (543)
T ss_dssp HHHTCHHHHHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHH-----HHCSSCCCTTTSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHH-----HCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 998577164443300368543445777767767078778999999999997-----402555552899999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCCCCHHH
Q ss_conf 9898288888885422467999989956598776399995999999999998276464889999999986-059996488
Q 006521 295 YLCFNFPFTHERPLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVK-VLLLPWRWG 373 (642)
Q Consensus 295 ~l~~~~P~~~~~~~~~~~~~~~W~~d~~~~~aW~~G~TG~PlVDA~MRqL~~tGwmHnr~Rm~VAsFLtk-~L~idWr~G 373 (642)
++++++|.+...++...+..++|..+++.|++|++|+|||||||||||||++|||||||+|||||||||| +|+||||+|
T Consensus 331 ~~~~~~P~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vASFL~kg~L~idWr~G 410 (543)
T 2wq7_A 331 TVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEG 410 (543)
T ss_dssp HHHHTCTTTTSSTTCTTCCCCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCCCHHHH
T ss_pred HHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99996876020067847643888667789999972999988999999999986872589999999999987218898167
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999852525678881102555178999988433249111135569820156530300018998854589999945798
Q 006521 374 MKYFWDTLLDADLECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLK 453 (642)
Q Consensus 374 ~~~F~~~LiD~D~a~N~~~Wqw~ag~g~d~~~~~Ri~NP~~q~~k~Dp~G~yIrrwvPEL~~lp~~~Ih~Pw~~~~~~~~ 453 (642)
++||+++|||||+++|+|||||+||||+|+. |||||||++|++||||+|+|||||||||+++|+++||+||++|..+|+
T Consensus 411 ~~~F~~~LiD~D~a~n~g~Wqw~aG~g~D~~-~~RifNP~~q~~kfDp~g~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~ 489 (543)
T 2wq7_A 411 QRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQR 489 (543)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHTTSSSCCC-TTCCCCTTTGGGGTCTTCHHHHHHSGGGTTSCHHHHTSGGGSCHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC-CCCCCCHHHHHHHCCCCCHHHHHHCHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 9999998315882217888898766787676-665247888855139985539986877654562214686557867888
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8199678999947779689999999999996733886
Q 006521 454 AAGVELGLNYPKPIIDLDLGRERLTQAIFKMWEMEAA 490 (642)
Q Consensus 454 ~a~~~~g~~YP~PIvd~~~ar~~~~~~~~~~~~~~~~ 490 (642)
.+||.+|.+||.|||||+++|++++++|+++++....
T Consensus 490 ~~~~~~g~~YP~PiVd~~~~r~~al~~~~~~~~~~~~ 526 (543)
T 2wq7_A 490 AYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYKVNRE 526 (543)
T ss_dssp HTTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6266656789888879899999999999998731565
No 5
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=1.00 E-value=1 Score=953.90 Aligned_cols=469 Identities=27% Similarity=0.444 Sum_probs=402.9
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHCC-CEEEEEEECCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99993899866898887999999999489-949999967995474-----587520499999999999999995699089
Q 006521 1 MGGNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQ-----FYPGRVSRWWLKQSLSYLGQSLKSLGAELV 74 (642)
Q Consensus 1 m~~~~~IvWFRrDLRl~DNpAL~~A~~~~-~vlpvfI~dP~~~~~-----~~~~~~~r~FLlesL~dL~~~L~~lG~~L~ 74 (642)
|.++.+|||||||||++||+||.+|++.+ +|+||||+||.++.. ...+..+.+||++||++|+++|+++|++|+
T Consensus 3 m~~~~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~ 82 (489)
T 1np7_A 3 HVPPTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLL 82 (489)
T ss_dssp CCCCEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 88884799959987712379999998369978999997714644443356777889999999999999999998799179
Q ss_pred EEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 99878269999999997199499990103905689999999986645938999729812459420111487641428999
Q 006521 75 LFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYW 154 (642)
Q Consensus 75 v~~g~~~~~~L~~l~~~~~i~~V~~~~~~~p~~~~RD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~ 154 (642)
+++| ++.++|.++++++++++|+++.+|+|+++.||++|+++|.+.||+++.+++++|++|+++.+..|++|.+|++|+
T Consensus 83 v~~g-~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~F~ 161 (489)
T 1np7_A 83 VTTG-LPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFR 161 (489)
T ss_dssp EEES-CHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHHHH
T ss_pred EEEC-CHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 9977-879999999998599889993546878999999999998865976999458856573212468999873199999
Q ss_pred HHHH-HCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHH--HHHHHHH
Q ss_conf 9997-534898877997421247899---999994348987200112210038998965346999999999--9886322
Q 006521 155 DKCL-QMQMEPASILPPWRLVQAAGT---IDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFV--EQHLLRY 228 (642)
Q Consensus 155 ~~~~-~~~~~~~p~~~p~~~~p~~~~---~~~~~le~lg~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl--~~~l~~Y 228 (642)
+++. .....+.|.+.|..+.+.+.. ...++++++++.... ......|+|||++|+++|+.|+ ++++..|
T Consensus 162 ~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y 236 (489)
T 1np7_A 162 KDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFD-----HRSVLAFQGGETAGLARLQDYFWHGDRLKDY 236 (489)
T ss_dssp HHHHTTTCCCCCCCCCCSCCCCCCCCCCCCCCCCGGGSCCCCCC-----TTSSCCCCCSHHHHHHHHHHHHTTSCCGGGH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99987326877788983124676532345678877663888767-----3336777974999999999998505057652
Q ss_pred HHCCCCC-CCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 1001589-999988771333169888999999999999998764203794019999998999999999898288888885
Q 006521 229 YKNRQKL-GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERP 307 (642)
Q Consensus 229 ~~~Rd~~-~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fi~eL~WREf~~~l~~~~P~~~~~~ 307 (642)
+..||.+ +.++||+|||||||||||||+|++++.... ......++++.|++||+|||||+++++++|.+...+
T Consensus 237 ~~~Rd~~~~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~------~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~ 310 (489)
T 1np7_A 237 KETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYE------QERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNR 310 (489)
T ss_dssp HHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHH------HHTCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGGST
T ss_pred HHCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH------HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 00356875556885747535388777999999999986------413434108999999999999999999785533330
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 42246799998995659877639999599999999999827646488999999998605999648899999852525678
Q 006521 308 LLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLE 387 (642)
Q Consensus 308 ~~~~~~~~~W~~d~~~~~aW~~G~TG~PlVDA~MRqL~~tGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LiD~D~a 387 (642)
....++.++|..|++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||++
T Consensus 311 ~~~~~~~~~W~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D~a 390 (489)
T 1np7_A 311 GGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVC 390 (489)
T ss_dssp TTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHCTTCCHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 48600037886698999999749989801999999999868876799999999999845889825899999982365721
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 88110255517899998843324911113556982015653030001899885458999994579881996789999477
Q 006521 388 CDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPI 467 (642)
Q Consensus 388 ~N~~~Wqw~ag~g~d~~~~~Ri~NP~~q~~k~Dp~G~yIrrwvPEL~~lp~~~Ih~Pw~~~~~~~~~a~~~~g~~YP~PI 467 (642)
+|+|||||+||||+|+. |||||||++|++||||+|+|||||||||+++|+++||+||++|..+++.+||.+|.+||.||
T Consensus 391 ~N~g~wqw~ag~g~d~~-~~RifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~~~~~g~~YP~Pi 469 (489)
T 1np7_A 391 SNWGNWNYTAGIGNDAR-DFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPC 469 (489)
T ss_dssp HHHHHHHHHHTSSCCTT-SCCCCCHHHHHHHHSTTSHHHHHHCGGGTTCCSGGGGCGGGCCHHHHHHTTCCBTTTBCCCS
T ss_pred CCHHHHHHHHCCCCCCC-CCCCCCHHHHHHHCCCCCCCHHHHCHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf 07475236645677766-55203787874511989765887587866367432569755887889871665578899888
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 796899999999999
Q 006521 468 IDLDLGRERLTQAIF 482 (642)
Q Consensus 468 vd~~~ar~~~~~~~~ 482 (642)
|||+++|+++++.++
T Consensus 470 Vd~~~~r~~a~~~~~ 484 (489)
T 1np7_A 470 VNFHQSVEARRKIEQ 484 (489)
T ss_dssp SCHHHHHHHHHTCC-
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 898999999999985
No 6
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=1.00 E-value=1 Score=942.00 Aligned_cols=462 Identities=28% Similarity=0.480 Sum_probs=400.6
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHH-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999938998668988879999999994-8994999996799547458752049999999999999999569908999878
Q 006521 1 MGGNRTIVWFRRDLRIEDNPALAAAAR-DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTE 79 (642)
Q Consensus 1 m~~~~~IvWFRrDLRl~DNpAL~~A~~-~~~vlpvfI~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~ 79 (642)
|+ +.+|||||||||++||+||.+|++ .++|+||||+||.+++....+..+.+||++||++|+++|+++|++|++++|
T Consensus 1 m~-~~~l~WfrrDLRl~Dn~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~g- 78 (484)
T 1owl_A 1 MA-APILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQG- 78 (484)
T ss_dssp ---CCEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEES-
T ss_pred CC-CCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC-
T ss_conf 98-6089997998770120999999826998899999761564277878899999999999999999987994799958-
Q ss_pred CHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 26999999999719949999010390568999999998664593899972981245942011148764142899999975
Q 006521 80 STLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQ 159 (642)
Q Consensus 80 ~~~~~L~~l~~~~~i~~V~~~~~~~p~~~~RD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~~ 159 (642)
++.++|.+++++++|++|+++++|+|+++.||++|+++|.+.||+++.+++++|++|+++.+..|++|++|++|++++..
T Consensus 79 ~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~~ 158 (484)
T 1owl_A 79 DPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQA 158 (484)
T ss_dssp CHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 88999999999859988999066784699999999998887696799965888974445135679974666999999997
Q ss_pred CCCCCCCCCCCCCCCCC---------CC-CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34898877997421247---------89-999999434898720011221003899896534699999999998863221
Q 006521 160 MQMEPASILPPWRLVQA---------AG-TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYY 229 (642)
Q Consensus 160 ~~~~~~p~~~p~~~~p~---------~~-~~~~~~le~lg~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~ 229 (642)
... +.|.+.|..+.+. +. ....++++.+++.. .+ . . .|+|||++|+++|+.|+++++..|+
T Consensus 159 ~~~-~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~-~-~-~~~~Ge~~A~~~L~~Fl~~~l~~Y~ 229 (484)
T 1owl_A 159 QPK-PTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDW-----DG-G-F-PVEPGETAAIARLQEFCDRAIADYD 229 (484)
T ss_dssp SCC-CCCCCCCCSCCCCCHHHHHHHGGGCCSSCCCTGGGTCCC-----CS-C-C-SSCSSHHHHHHHHHHHHHTGGGGHH
T ss_pred HCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC-----CC-C-C-CCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 468-878899622356430001245654457899877749986-----55-5-7-6898789999999999998998845
Q ss_pred HCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 00158999998877133316988899999999999999876420379401999999899999999989828888888542
Q 006521 230 KNRQKLGGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLL 309 (642)
Q Consensus 230 ~~Rd~~~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fi~eL~WREf~~~l~~~~P~~~~~~~~ 309 (642)
..||.|+.++||+|||||||||||||+|++++...... .......++.+.|++||+||||++++++++|.+...++.
T Consensus 230 ~~rd~p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~---~~~~~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~ 306 (484)
T 1owl_A 230 PQRNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAHAL---SRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYR 306 (484)
T ss_dssp HHTTCTTSCCSCCCHHHHHTTSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSCCS
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 01578776687676676717876799999999997302---233433356899999999999999999969751024677
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 24679999899565987763999959999999999982764648899999999860599964889999985252567888
Q 006521 310 SNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECD 389 (642)
Q Consensus 310 ~~~~~~~W~~d~~~~~aW~~G~TG~PlVDA~MRqL~~tGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LiD~D~a~N 389 (642)
..++.++|..|++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+++|
T Consensus 307 ~~~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~llD~d~a~n 386 (484)
T 1owl_A 307 SLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAAN 386 (484)
T ss_dssp TGGGGCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHHHTTCTTCCHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 35416997678899999972898986399999999996873689999999999972689983799999996546771217
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 11025551789999884332491111355698201565303000189988545899999457988199678999947779
Q 006521 390 ILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIID 469 (642)
Q Consensus 390 ~~~Wqw~ag~g~d~~~~~Ri~NP~~q~~k~Dp~G~yIrrwvPEL~~lp~~~Ih~Pw~~~~~~~~~a~~~~g~~YP~PIvd 469 (642)
+|||||+||||+|++| ||||||++|++||||+|+|||||||||+++|+++||+||+++. .+| +||.||||
T Consensus 387 ~g~wqw~ag~G~d~~p-fRifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~Pw~~~~----~~~-----~YP~PiVd 456 (484)
T 1owl_A 387 NGGWQWSASSGMDPKP-LRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPI----ERR-----GYPAPIVN 456 (484)
T ss_dssp HHHHHHTTTCSSSCCC-CCCCCHHHHHHHHSTTCHHHHHHCGGGTTSCHHHHHHTCCCHH----HHT-----TSCCCSSC
T ss_pred HHHHHHHHCCCCCCCC-CCEECHHHHHHHCCCCCHHHHHHCHHHHCCCHHHCCCCCCCHH----HHC-----CCCCCCCC
T ss_conf 7999975075878986-6401888886612998555888582411598442478420215----326-----89987779
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 68999999999999673
Q 006521 470 LDLGRERLTQAIFKMWE 486 (642)
Q Consensus 470 ~~~ar~~~~~~~~~~~~ 486 (642)
|+++|++++++|+++++
T Consensus 457 ~~~~r~~a~~~~~~~~~ 473 (484)
T 1owl_A 457 HNLRQKQFKALYNQLKA 473 (484)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999874
No 7
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=1.00 E-value=1 Score=941.19 Aligned_cols=458 Identities=29% Similarity=0.494 Sum_probs=396.8
Q ss_pred CEEEEECCCCCCCCCHHHHHHHH--CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE----EC
Q ss_conf 38998668988879999999994--8994999996799547458752049999999999999999569908999----87
Q 006521 5 RTIVWFRRDLRIEDNPALAAAAR--DGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLF----KT 78 (642)
Q Consensus 5 ~~IvWFRrDLRl~DNpAL~~A~~--~~~vlpvfI~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~----~g 78 (642)
++||||||||||+||+||.+|++ .++|+||||+||.+++....+..+.+||++||++|+++|+++|++|+++ +|
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g 81 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV 81 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 78999699876231399999983789988999998745540678788999999999999999999879907999706779
Q ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 82699999999971994999901039056899999999866459389997298124594201114876414289999997
Q 006521 79 ESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCL 158 (642)
Q Consensus 79 ~~~~~~L~~l~~~~~i~~V~~~~~~~p~~~~RD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~ 158 (642)
++.++|.+++++++|+.|+++++|+|+++.||++|+++|.+ |.++.+++++|++|+++.+..|++|.+|++|++++.
T Consensus 82 -~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~--i~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~ 158 (471)
T 1dnp_A 82 -ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN--VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL 158 (471)
T ss_dssp -HHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT--SEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHHHH
T ss_pred -CHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCC--CEEEEECCCEEECHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf -98999999999849988999324481188999999998417--679996488898143314578998722489999999
Q ss_pred HCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 53489--8877997421247899999994348987200112210038998965346999999999988632210015899
Q 006521 159 QMQME--PASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLG 236 (642)
Q Consensus 159 ~~~~~--~~p~~~p~~~~p~~~~~~~~~le~lg~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~ 236 (642)
..... +.+.+.|..+.+ +. .....++++++.. .......|+|||++|+++|+.|+++++..|+..||.|+
T Consensus 159 ~~l~~~~p~~~~~p~~~~~-~~-~~~~~~~~l~~~~------~~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~rd~p~ 230 (471)
T 1dnp_A 159 KRLREGMPECVAAPKVRSS-GS-IEPSPSITLNYPR------QSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPA 230 (471)
T ss_dssp HHHHTCCCCCCCCCCCCTT-CC-CCCCCCCCCCSCC------CCCCTTTSCCSHHHHHHHHHHHHHTHHHHHHHHTTCTT
T ss_pred HHCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCC------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8604467777899655676-54-4677775457885------43322357977899999999999989988534058867
Q ss_pred CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCC
Q ss_conf 9998877133316988899999999999999876420379401-999999899999999989828888888-54224679
Q 006521 237 GNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKES-VTFFLRAMGLREYSRYLCFNFPFTHER-PLLSNLKY 314 (642)
Q Consensus 237 ~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s-~~~fi~eL~WREf~~~l~~~~P~~~~~-~~~~~~~~ 314 (642)
.++||+|||||+|||||||+|++++.... .+ ...++ .+.|++||+||||++++++++|.+... ++.+.++.
T Consensus 231 ~~~tS~LSpyL~~G~lSpr~v~~~~~~~~-----~~--~~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~~ 303 (471)
T 1dnp_A 231 VEGTSRLSASLATGGLSPRQCLHRLLAEQ-----PQ--ALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDR 303 (471)
T ss_dssp SCCSCCCHHHHHHTSSCHHHHHHHHHHHC-----GG--GGGTSTTHHHHHHHHHHHHHHHHHHHCGGGGGTCCSSGGGGG
T ss_pred CCCCCCCCHHHCCCCCCHHHHHHHHHHHH-----CC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHC
T ss_conf 56877778767078767999999999974-----13--445660889999999999999999969741116784646546
Q ss_pred CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 99989956598776399995999999999998276464889999999986059996488999998525256788811025
Q 006521 315 FPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQ 394 (642)
Q Consensus 315 ~~W~~d~~~~~aW~~G~TG~PlVDA~MRqL~~tGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LiD~D~a~N~~~Wq 394 (642)
++|..|++.|++|++|+|||||||||||||++|||||||+||+|||||||+|+||||+|++||+++|||||+++|+||||
T Consensus 304 l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~RMivAsFL~k~L~idWr~g~~~F~~~llD~d~a~n~g~wq 383 (471)
T 1dnp_A 304 VQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQ 383 (471)
T ss_dssp SCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 99768789999998189798899999999999787578999999999997358995389999998664777235889997
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 55178999988433249111135569820156530300018998854589999945798819967899994777968999
Q 006521 395 YISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGR 474 (642)
Q Consensus 395 w~ag~g~d~~~~~Ri~NP~~q~~k~Dp~G~yIrrwvPEL~~lp~~~Ih~Pw~~~~~~~~~a~~~~g~~YP~PIvd~~~ar 474 (642)
|+||||+|++||||||||++|++||||+|+|||||||||+++|+++||+||++ ++.++|.+ +||.|||||+++|
T Consensus 384 w~ag~G~d~~py~RifNp~~q~~kfDp~G~YIrrwvPeL~~~p~~~ih~Pw~~----~~~~~~~~--~YP~PiVd~~~~r 457 (471)
T 1dnp_A 384 WAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKW----AQKAGVTL--DYPQPIVEHKEAR 457 (471)
T ss_dssp HHTTCSTTCCCTTCCCCHHHHHHHHTTTCHHHHHHCGGGTTSCTTGGGSHHHH----HHTTTCCC--SSCCCSSCHHHHH
T ss_pred HHCCCCCCCCCCCEECCHHHHHHHCCCCCHHHHHHCHHHCCCCHHHCCCCHHH----HHHCCCCC--CCCCCCCCHHHHH
T ss_conf 62177888887430318989977519983568885824106986644784465----87548778--9998877999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999673
Q 006521 475 ERLTQAIFKMWE 486 (642)
Q Consensus 475 ~~~~~~~~~~~~ 486 (642)
++++++|++++.
T Consensus 458 ~~al~~~~~~~~ 469 (471)
T 1dnp_A 458 VQTLAAYEAARK 469 (471)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999987652
No 8
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=1.00 E-value=1 Score=916.81 Aligned_cols=462 Identities=26% Similarity=0.331 Sum_probs=390.6
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHCC-CEEEEEEECCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 993899866898887999999999489-949999967995474------5875204999999999999999956990899
Q 006521 3 GNRTIVWFRRDLRIEDNPALAAAARDG-SVFPVYTWCPKEEGQ------FYPGRVSRWWLKQSLSYLGQSLKSLGAELVL 75 (642)
Q Consensus 3 ~~~~IvWFRrDLRl~DNpAL~~A~~~~-~vlpvfI~dP~~~~~------~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v 75 (642)
++.+|||||||||++||+||.+|++.+ +|+||||+||.++.. ...+..+.+||++||++|+++|+++|++|++
T Consensus 39 ~~~~l~WfrrDLRl~DN~AL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v 118 (525)
T 2j4d_A 39 KGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLI 118 (525)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHHTCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 97599996998670231999999946996899999773564344434578778999999999999999999976996899
Q ss_pred EECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC--CEEEEECCCEEECCCCCCCCCCCCCCCHHHH
Q ss_conf 98782699999999971994999901039056899999999866459--3899972981245942011148764142899
Q 006521 76 FKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELG--ISVQSYNGDLLYEPWEIYDERGHAFTTFDAY 153 (642)
Q Consensus 76 ~~g~~~~~~L~~l~~~~~i~~V~~~~~~~p~~~~RD~~v~~~l~~~g--I~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f 153 (642)
++| ++.++|.++++++++++|+++++|+|+++.||++|+++|.+.| |+++.+++++|++|+++....|.++.+|++|
T Consensus 119 ~~g-~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~~g~~~~vft~F 197 (525)
T 2j4d_A 119 RSG-KPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQF 197 (525)
T ss_dssp EES-CHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGGGCCSSHHHH
T ss_pred EEC-CHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCCCCCCCCHHHH
T ss_conf 967-8799999999984998899906678889999999999998659946899966887875111245679874139999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHH-H-HHHHHH
Q ss_conf 9999753489887799742124789---9999994348987200112210038998965346999999999-9-886322
Q 006521 154 WDKCLQMQMEPASILPPWRLVQAAG---TIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFV-E-QHLLRY 228 (642)
Q Consensus 154 ~~~~~~~~~~~~p~~~p~~~~p~~~---~~~~~~le~lg~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl-~-~~l~~Y 228 (642)
++++......+.|.+.|..+.+.+. ...+++++++++.... . .....|+|||++|+++|+.|+ + +++..|
T Consensus 198 ~r~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~~--~---~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y 272 (525)
T 2j4d_A 198 RKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQE--V---TRGMRFVGGESAGVGRVFEYFWKKDLLKVY 272 (525)
T ss_dssp HHHHHHHCCCCCCCCBCSCCCCCCCCSCCCCCCCTTTTTCCCCC--C---CSEEEECCSHHHHHHHHHHHHTTSCCGGGH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC--C---CCCCCCCCCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99999756888888971014776433455679997881898656--6---656778975999999999998527047660
Q ss_pred HHCCCCC-CCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCC
Q ss_conf 1001589-999988771333169888999999999999998764203794019999998999999999898288-88888
Q 006521 229 YKNRQKL-GGNSTSLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFP-FTHER 306 (642)
Q Consensus 229 ~~~Rd~~-~~~~tS~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fi~eL~WREf~~~l~~~~P-~~~~~ 306 (642)
+..||.+ +.++||+|||||+|||||||+|++++.... ......++++.|++||+|||||+++++++| .+...
T Consensus 273 ~~~Rd~~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~------~~~~~~~~~~~f~~EL~WREf~~~~~~~~~~~~~~~ 346 (525)
T 2j4d_A 273 KETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYE------KERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHL 346 (525)
T ss_dssp HHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHH------HHTCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGTST
T ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH------HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_conf 45689854233677767645388677999999999985------313556557999999999999999999769503201
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 54224679999899565987763999959999999999982764648899999999860599964889999985252567
Q 006521 307 PLLSNLKYFPWHADLGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADL 386 (642)
Q Consensus 307 ~~~~~~~~~~W~~d~~~~~aW~~G~TG~PlVDA~MRqL~~tGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LiD~D~ 386 (642)
.... ...++|..+++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+
T Consensus 347 ~~~~-~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D~ 425 (525)
T 2j4d_A 347 GGPR-NVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDP 425 (525)
T ss_dssp TTTT-TCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCBCHHHHHHHHHHHCTTCCH
T ss_pred CCCH-HHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCH
T ss_conf 5863-313899778899999973999986799999999997885789999999999996089947999999986335661
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 88811025551789999884332491111355698201565303000189988545899999457988199678999947
Q 006521 387 ECDILGWQYISGSLPDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKP 466 (642)
Q Consensus 387 a~N~~~Wqw~ag~g~d~~~~~Ri~NP~~q~~k~Dp~G~yIrrwvPEL~~lp~~~Ih~Pw~~~~~~~~~a~~~~g~~YP~P 466 (642)
++|+|||||+||+|+|+.+ ||||||++|++||||+|+|||||||||+++|.++||+||+++ .++|++|.+||.|
T Consensus 426 a~n~g~WQw~aG~g~D~~~-~RifNP~~q~kk~Dp~G~YIrrwvPEL~~~p~~~ih~Pw~~~-----~~~~~~g~~Yp~P 499 (525)
T 2j4d_A 426 CSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM-----YMDTVVPLKHGNG 499 (525)
T ss_dssp HHHHHHHHHHHTCSSCGGG-CCCCCHHHHHHHHCTTCHHHHHHSGGGTTSCTTTTTSCHHHH-----TCCCSSCCSCCC-
T ss_pred HCCHHHHHHHCCCCCCCCC-CCCCCHHHHHHHCCCCCHHHHHHCHHHHCCCHHCCCCCCCCC-----CCCCCCCCCCCCC
T ss_conf 0076888853177887665-554788998551097942388749030069811066876676-----4334457889987
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 77968999999999999
Q 006521 467 IIDLDLGRERLTQAIFK 483 (642)
Q Consensus 467 Ivd~~~ar~~~~~~~~~ 483 (642)
|||++.+|++..++.+.
T Consensus 500 i~~~~~~~~~~~~~~~~ 516 (525)
T 2j4d_A 500 PMAGGSKSGGGFRGSHS 516 (525)
T ss_dssp -----------------
T ss_pred CCCCHHHHHCCCHHHHC
T ss_conf 65625665315112322
No 9
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=1.00 E-value=1 Score=909.46 Aligned_cols=425 Identities=27% Similarity=0.462 Sum_probs=376.8
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHC-CCEEEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 389986689888799999999948-994999996799547458-752049999999999999999569908999878269
Q 006521 5 RTIVWFRRDLRIEDNPALAAAARD-GSVFPVYTWCPKEEGQFY-PGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTL 82 (642)
Q Consensus 5 ~~IvWFRrDLRl~DNpAL~~A~~~-~~vlpvfI~dP~~~~~~~-~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~~~~ 82 (642)
.+|||||||||++||+||.+|++. ++|+||||+||.+++... .+..+.+||++||++|+++|+++|++|++++| ++.
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g-~~~ 80 (440)
T 2e0i_A 2 DCIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELRKKGSRLNVFFG-EAE 80 (440)
T ss_dssp EEEEEESSCCCSSSCHHHHHHHHHSSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEES-CHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC-CHH
T ss_conf 8899958997600259999998469978999996705530477678999999999999999999976996999978-889
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99999999719949999010390568999999998664593899972981245942011148764142899999975348
Q 006521 83 AALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQM 162 (642)
Q Consensus 83 ~~L~~l~~~~~i~~V~~~~~~~p~~~~RD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~~~~~ 162 (642)
++|.++++ +|+.|+++.+|+|+++.||++|+++|.+.||+++.+++++|++|+++ +|++|++|++++....+
T Consensus 81 ~~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~------~y~vftpf~~~~~~~~~ 152 (440)
T 2e0i_A 81 KVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKSLF------HHRNFTSFYNEVSKVKV 152 (440)
T ss_dssp HHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGC------CCSSHHHHHHHHTTSCC
T ss_pred HHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCC------CCCCCCHHHHHHHHHCC
T ss_conf 99999983--89989991565767899999999998876926999668789764636------75447599999998234
Q ss_pred CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98--8779974212478999999943489872001122100389989653469999999999886322100158999998
Q 006521 163 EP--ASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNST 240 (642)
Q Consensus 163 ~~--~p~~~p~~~~p~~~~~~~~~le~lg~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~t 240 (642)
.. .+.++|. ..|.+. .+.++ . . ....|+|||++|+++|+ |+++++..| ..||.|+.++|
T Consensus 153 ~~p~~~~~~~~-~~~~p~-----~~~~l--p------~---~~~~~~~Ge~~A~~~L~-Fl~~~l~~Y-~~rd~p~~~~t 213 (440)
T 2e0i_A 153 REPETMEGSFD-VTDSSM-----NVDFL--L------T---FKKIESPLFRGGRREGL-YLLHRNVDF-RRRDYPAENNN 213 (440)
T ss_dssp CCCCCCCCCBC-CCSSSB-----CGGGG--G------G---TCCCCCTTCCCSHHHHH-HHHTCCCCG-GGTTCTTTTCC
T ss_pred CCCCCCCCCCC-CCCCCC-----HHHHC--C------C---CCCCCCCCHHHHHHHHH-HHHHHHHCC-CCCCCCCCCCC
T ss_conf 65666789755-589940-----12218--7------6---33579977999999999-877565157-76787665588
Q ss_pred CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87713331698889999999999999987642037940199999989999999998982888888854224679999899
Q 006521 241 SLLSPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHAD 320 (642)
Q Consensus 241 S~LSPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fi~eL~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d 320 (642)
|+|||||+|||||||+|++++ ++++.|++||+||||++++++++|.+...++.+.++.++|..|
T Consensus 214 S~LSPyL~~G~lSpr~v~~~~----------------~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~W~~d 277 (440)
T 2e0i_A 214 YRLSPHLKFGTISMREAYYTQ----------------KGKEEFVRELYWRDFFTLLAYYNPHVFGHCYRREYDNISWENN 277 (440)
T ss_dssp CCCHHHHHTTSSCHHHHHHHS----------------TTCHHHHHHHHHHHHHHHHHHHCGGGTTSCSSGGGGGCCCCCC
T ss_pred CCCCHHHHCCCCCHHHHHHHH----------------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCC
T ss_conf 885676707987899999983----------------4888999999999999999996997323565635326886434
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCC
Q ss_conf 56598776399995999999999998276464889999999986059996488999998525256788811025551789
Q 006521 321 LGNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSL 400 (642)
Q Consensus 321 ~~~~~aW~~G~TG~PlVDA~MRqL~~tGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~ag~g 400 (642)
++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+++|+|||||+||||
T Consensus 278 ~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g 357 (440)
T 2e0i_A 278 ESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDWRWGERYFATKLVDYDPAINNGNWQWIASTG 357 (440)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
T ss_conf 68999998389998999999999999763519999999999999838996279999999736678432689999874758
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99988433249111135569820156530300018998854589999945798819967899994777968999999999
Q 006521 401 PDGHELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQA 480 (642)
Q Consensus 401 ~d~~~~~Ri~NP~~q~~k~Dp~G~yIrrwvPEL~~lp~~~Ih~Pw~~~~~~~~~a~~~~g~~YP~PIvd~~~ar~~~~~~ 480 (642)
+|+ |||||||++|++||||+|+|||||||||+++|+++||+||++ +|.+||.|||||+++|++++++
T Consensus 358 ~d~--~~RifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~pw~~-----------~~~~YP~PiVd~~~~r~~a~~~ 424 (440)
T 2e0i_A 358 VDY--MFRVFNPWKQQEKFDPEAKFIKEWVEELKDVPPSIIHSIYKT-----------KVPGYPSPIVNWLERVNYVKSE 424 (440)
T ss_dssp SCC--SCCCCCHHHHHHHHCTTCHHHHHHCGGGGGSCHHHHTTTTTS-----------CCTTSCCCSSCHHHHHHHHHHH
T ss_pred CCC--CCCCCCHHHHHHHHCCCCHHHHHHCHHHHCCCCCCCCCCHHH-----------CCCCCCCCCCCHHHHHHHHHHH
T ss_conf 898--777248989999869884759986878654573225584011-----------2789998887989999999999
Q ss_pred HHHHHH
Q ss_conf 999673
Q 006521 481 IFKMWE 486 (642)
Q Consensus 481 ~~~~~~ 486 (642)
|++++.
T Consensus 425 ~~~~~~ 430 (440)
T 2e0i_A 425 YKNVKA 430 (440)
T ss_dssp HHHC--
T ss_pred HHHHHH
T ss_conf 997774
No 10
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=1.00 E-value=1 Score=864.98 Aligned_cols=418 Identities=30% Similarity=0.476 Sum_probs=371.6
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
Q ss_conf 93899866898887999999999489949999967995474587520499999999999999995699089998782699
Q 006521 4 NRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLA 83 (642)
Q Consensus 4 ~~~IvWFRrDLRl~DNpAL~~A~~~~~vlpvfI~dP~~~~~~~~~~~~r~FLlesL~dL~~~L~~lG~~L~v~~g~~~~~ 83 (642)
+.+|||||||||++||+||.+|++.++|+||||+||.+++ . +..+.+|+++||++|+++|+++|++|++++| ++.+
T Consensus 2 ~~~l~WfrrDlRl~Dn~aL~~A~~~~~v~~vfi~d~~~~~--~-~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g-~~~~ 77 (420)
T 2j07_A 2 GPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLK--T-TPRRRAWFLENVRALREAYRARGGALWVLEG-LPWE 77 (420)
T ss_dssp CCEEEEESSCCCSTTCHHHHHHHTTSCEEEEEEECHHHHS--S-CHHHHHHHHHHHHHHHHHHHHTTCCEEEEES-CHHH
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCC--C-CHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC-CHHH
T ss_conf 6099993788772205999999857998999997775566--7-8899999999999999999977995899958-8799
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99999997199499990103905689999999986645938999729812459420111487641428999999753489
Q 006521 84 ALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFDAYWDKCLQMQME 163 (642)
Q Consensus 84 ~L~~l~~~~~i~~V~~~~~~~p~~~~RD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~~~~~~ 163 (642)
+|.+++++++++.|+++.+|+|+++.||++|+++| ||+++.+++++|++|++ |.+|.+|++|++++. . +.
T Consensus 78 ~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l---~i~~~~~~~~~l~~~~~-----~~~~~~~t~f~k~~~-~-~~ 147 (420)
T 2j07_A 78 KVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL---PVPLHLLPAPHLLPPDL-----PRAYRVYTPFSRLYR-G-AA 147 (420)
T ss_dssp HHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---SSCEEEECCCCSSCTTC-----SSCCSSHHHHHTTCC-C-CC
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHC---CCEEEEECCCEEECCCC-----CCCCCCCCHHHHHHH-H-CC
T ss_conf 99999998499889991566736799999999976---97699967877873677-----986532229999976-1-26
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 88779974212478999999943489872001122100389989653469999999999886322100158999998877
Q 006521 164 PASILPPWRLVQAAGTIDGCSIEDLGLEDESEKSSNALLGRGWSPGWSNADKVLTEFVEQHLLRYYKNRQKLGGNSTSLL 243 (642)
Q Consensus 164 ~~p~~~p~~~~p~~~~~~~~~le~lg~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rd~~~~~~tS~L 243 (642)
.|...|... +. + ++...+.. . ......|+|||++|+++|+.|+++++..|+..||.|+.++||+|
T Consensus 148 -~p~~~p~~~-~~------p-~~~~~l~~-~-----~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~rd~p~~~~tS~L 212 (420)
T 2j07_A 148 -PPLPPPEAL-PK------G-PEEGEIPR-E-----DPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRL 212 (420)
T ss_dssp -CCCCCCSSC-CC------C-CCCCCCCC-C-----CCSSCCCCCSHHHHHHHHHHHHHHTGGGHHHHTTCTTCTTSCCC
T ss_pred -CCCCCCCCC-CC------C-CCCCCCCC-C-----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf -889996445-79------8-75000887-6-----44423479869999999999999888664231578776688886
Q ss_pred CHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 13331698889999999999999987642037940199999989999999998982888888854224679999899565
Q 006521 244 SPYLHFGELSVRKVFQCLWMKQILWAKEENFEGKESVTFFLRAMGLREYSRYLCFNFPFTHERPLLSNLKYFPWHADLGN 323 (642)
Q Consensus 244 SPyL~fG~LS~ReV~~~v~~~~~~~~~~~~~~~~~s~~~fi~eL~WREf~~~l~~~~P~~~~~~~~~~~~~~~W~~d~~~ 323 (642)
||||||||||||+|++++... . .++.+.|++||+||||++++++++|.+...++.+.++.++|..|++.
T Consensus 213 SpyL~~G~lSpr~v~~~~~~~------~-----~~~~~~f~~eL~WREf~~~~~~~~p~~~~~~~~~~~~~l~w~~d~~~ 281 (420)
T 2j07_A 213 SPYFALGVLSPRLAAWEAERR------G-----GEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEAL 281 (420)
T ss_dssp HHHHHTTSSCHHHHHHHHHHH------C-----SHHHHHHHHHHHHHHHHHHHHHHCGGGGTSCSSGGGTTCCCCCCHHH
T ss_pred CHHHCCCCCCHHHHHHHHHHH------H-----CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHH
T ss_conf 641268865899999999987------4-----26788999999999999999986985334566434415886557799
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 98776399995999999999998276464889999999986059996488999998525256788811025551789999
Q 006521 324 FKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLECDILGWQYISGSLPDG 403 (642)
Q Consensus 324 ~~aW~~G~TG~PlVDA~MRqL~~tGwmHnr~Rm~VAsFLtk~L~idWr~G~~~F~~~LiD~D~a~N~~~Wqw~ag~g~d~ 403 (642)
|++|++|+|||||||||||||++|||||||+||||||||||+|+|||++|++||+++|||||+++|+|||||+||+|+|+
T Consensus 282 ~~~w~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~d~ 361 (420)
T 2j07_A 282 FQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDA 361 (420)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGG
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
T ss_conf 99997699896759999999999688776999999999998538997189999999700588331679889987268888
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 88433249111135569820156530300018998854589999945798819967899994777968999999999999
Q 006521 404 HELERLDSPEIQGSKFDPEGEYVRQWLPELARMPTEWIHHPWDAPPNVLKAAGVELGLNYPKPIIDLDLGRERLTQAIFK 483 (642)
Q Consensus 404 ~~~~Ri~NP~~q~~k~Dp~G~yIrrwvPEL~~lp~~~Ih~Pw~~~~~~~~~a~~~~g~~YP~PIvd~~~ar~~~~~~~~~ 483 (642)
+||||||||++|++||||+|+|||||||||+++| ||.|||||+++|++++++|++
T Consensus 362 ~pyfR~fNp~~q~~kfDp~g~yir~w~pel~~~p-------------------------YP~Pivd~~~~r~~a~~~~~~ 416 (420)
T 2j07_A 362 APYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYA-------------------------PKDPVVDLEEARRRYLRLARD 416 (420)
T ss_dssp CCTTCCCCHHHHHHHHSTTSHHHHHHCTTCSSSS-------------------------CSSCSSCHHHHHHHHHHHHHH
T ss_pred CCCCEEECHHHHHHHHCCCCHHHHHHCHHHCCCC-------------------------CCCCCCCHHHHHHHHHHHHHH
T ss_conf 8776034899999984998466898581101798-------------------------997766999999999999998
Q ss_pred HHH
Q ss_conf 673
Q 006521 484 MWE 486 (642)
Q Consensus 484 ~~~ 486 (642)
++.
T Consensus 417 ~~~ 419 (420)
T 2j07_A 417 LAR 419 (420)
T ss_dssp HHC
T ss_pred HHC
T ss_conf 655
Done!