Query 006522
Match_columns 642
No_of_seqs 382 out of 4521
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 18:41:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006522.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2149-2153//hhsearch_pdb/006522hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 402.9 24.6 262 347-641 46-319 (329)
2 4gt4_A Tyrosine-protein kinase 1.0 1 1 402.4 22.6 262 347-640 31-305 (308)
3 4asz_A BDNF/NT-3 growth factor 1.0 1 1 400.9 20.5 262 347-641 18-289 (299)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 390.8 24.5 255 347-641 41-300 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 389.0 20.8 264 347-640 69-346 (353)
6 3hmm_A TGF-beta receptor type- 1.0 1 1 387.1 20.7 267 347-642 8-298 (303)
7 4fih_A Serine/threonine-protei 1.0 1 1 377.0 21.3 241 348-634 80-323 (346)
8 4b9d_A Serine/threonine-protei 1.0 1 1 376.9 21.1 246 347-634 29-276 (350)
9 4fie_A Serine/threonine-protei 1.0 1 1 376.7 22.6 242 347-634 156-400 (423)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 375.0 21.0 251 347-639 63-314 (336)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=402.90 Aligned_cols=262 Identities=24% Similarity=0.382 Sum_probs=208.7
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 30027557761189993589999997299999912898321089999999998615689711488999958914899950
Q 006522 347 AYVVGKSKNGIMYKVVVGRGSGMGAPTVVAVRRLTEGDATWRFKDFESEVEAIARVQHPNIVRLKAFYYANDEKLLISDF 426 (642)
Q Consensus 347 ~~~ig~g~~g~vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 426 (642)
.+.||+|+||.||++.............||||+++.... ...++|.+|+++|++++|||||+++|+|.+.+..++||||
T Consensus 46 ~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~-~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey 124 (329)
T 4aoj_A 46 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASE-SARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEY 124 (329)
T ss_dssp EEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSH-HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred EEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 779714778489989987866577896999999775797-9999999999999858998999698999989989999982
Q ss_pred CCCCCHHHHHHCCCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEECCCCCEEEEC
Q ss_conf 5699688887239999----------999999999999999999999998703999951058899991238999808911
Q 006522 427 IRNGSLYAALHAGPSD----------SLPPLPWEARLKIAQGTARGLMYIHEYSPRKYVHGNIKSTKILLDDELHPCISG 496 (642)
Q Consensus 427 ~~~g~L~~~l~~~~~~----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrdlk~~NILld~~~~~ki~D 496 (642)
|++|+|.++++..... ...+++|.+++.|+.|||+||+|||+ ++|+||||||+|||+++++.+||+|
T Consensus 125 ~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~~Ki~D 201 (329)
T 4aoj_A 125 MRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLVVKIGD 201 (329)
T ss_dssp CTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECC
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCEECCCCCHHHEEECCCCCEEECC
T ss_conf 7999399999860754100122112457889999999999999999999840---8842266667648988999689766
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCC
Q ss_conf 25533479998654453025328886555679830285323248888963306779999999994-99999999999531
Q 006522 497 FGLNRLLPGTSKVTKNETIVTSGTGSRISAISNVYLAPEARIYGSKFTQKCDVYSFGIVLLEILT-GRLPDAGPENDGKG 575 (642)
Q Consensus 497 fGla~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DV~SfGviL~el~t-G~~P~~~~~~~~~~ 575 (642)
||+|+.+....... ......||..|||||++.. ..++.++|||||||+||||+| |+.||.+..
T Consensus 202 FGla~~~~~~~~~~----------~~~~~~gt~~ymAPE~~~~-~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~----- 265 (329)
T 4aoj_A 202 FGMSRDIYSTDYYR----------VGGRTMLPIRWMPPESILY-RKFTTESDVWSFGVVLWEIFTYGKQPWYQLS----- 265 (329)
T ss_dssp CC--------------------------CCCCGGGCCHHHHTT-CCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC-----
T ss_pred CCCCEECCCCCCCE----------ECCCCCCCCCCCCHHHHCC-CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC-----
T ss_conf 60333656787530----------0476455656658265447-9999663001057899999828999999989-----
Q ss_pred HHHHHHHHHHCC-CCCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 789999998515-987533384554110479999999999986377899999997899999985424
Q 006522 576 LESLVRKAFRER-RPLSEVIDPALVKEIHAKRQVLATFHIALNCTELDPEFRPRMRTVSESLDRVKL 641 (642)
Q Consensus 576 l~~~~~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~~~l~~~C~~~dP~~RPt~~ev~~~L~~i~~ 641 (642)
..+.+....... .+.++.+++ .+.+++.+||+.||++||||.||++.|+.+..
T Consensus 266 ~~~~~~~i~~g~~~~~p~~~~~-------------~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 266 NTEAIDCITQGRELERPRACPP-------------EVYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCH-------------HHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCH-------------HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999980898998644639-------------99999999747596579299999999998745
No 2
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=402.38 Aligned_cols=262 Identities=23% Similarity=0.324 Sum_probs=207.7
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 30027557761189993589999997299999912898321089999999998615689711488999958914899950
Q 006522 347 AYVVGKSKNGIMYKVVVGRGSGMGAPTVVAVRRLTEGDATWRFKDFESEVEAIARVQHPNIVRLKAFYYANDEKLLISDF 426 (642)
Q Consensus 347 ~~~ig~g~~g~vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 426 (642)
.+.||+|+||.||+|.+...........||||+++........++|.+|+.++++++|||||+++|+|.+.+..++||||
T Consensus 31 ~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey 110 (308)
T 4gt4_A 31 MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSY 110 (308)
T ss_dssp EEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred EEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEEC
T ss_conf 66913588848999998577658888699999988014968999999999999858998987736499889988999981
Q ss_pred CCCCCHHHHHHCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEECCCCCEEEE
Q ss_conf 5699688887239999-----------99999999999999999999999870399995105889999123899980891
Q 006522 427 IRNGSLYAALHAGPSD-----------SLPPLPWEARLKIAQGTARGLMYIHEYSPRKYVHGNIKSTKILLDDELHPCIS 495 (642)
Q Consensus 427 ~~~g~L~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrdlk~~NILld~~~~~ki~ 495 (642)
|++|+|.++|+..... ....++|..++.|+.|||+||+|||+ ++|+||||||+|||+++++.+||+
T Consensus 111 ~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~~~~Ki~ 187 (308)
T 4gt4_A 111 CSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVLVYDKLNVKIS 187 (308)
T ss_dssp CSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEEC
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCEEECCCCCEEEC
T ss_conf 89994999998627654333322111124689999999999999999999986---899778736230688799978988
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCC
Q ss_conf 125533479998654453025328886555679830285323248888963306779999999994-9999999999953
Q 006522 496 GFGLNRLLPGTSKVTKNETIVTSGTGSRISAISNVYLAPEARIYGSKFTQKCDVYSFGIVLLEILT-GRLPDAGPENDGK 574 (642)
Q Consensus 496 DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DV~SfGviL~el~t-G~~P~~~~~~~~~ 574 (642)
|||+++.+...... .......||..|||||++.. ..++.++|||||||+||||+| |+.||.+..
T Consensus 188 DFGlar~~~~~~~~----------~~~~~~~gt~~ymAPE~l~~-~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~---- 252 (308)
T 4gt4_A 188 DLGLFREVYAADYY----------KLLGNSLLPIRWMAPEAIMY-GKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS---- 252 (308)
T ss_dssp CSCCBCGGGGGGCB----------CSSSSSCBCGGGCCHHHHHH-CCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC----
T ss_pred CCCCCEECCCCCCE----------EEECCCCCCCCCCCHHHHHC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_conf 76020233677740----------47345125776569899827-9999630001579999999968999999989----
Q ss_pred CHHHHHHHHHHCC-CCCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1789999998515-98753338455411047999999999998637789999999789999998542
Q 006522 575 GLESLVRKAFRER-RPLSEVIDPALVKEIHAKRQVLATFHIALNCTELDPEFRPRMRTVSESLDRVK 640 (642)
Q Consensus 575 ~l~~~~~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~~~l~~~C~~~dP~~RPt~~ev~~~L~~i~ 640 (642)
..+.+....... .+.++.+. ..+.+++.+||+.||++||||.+|++.|+...
T Consensus 253 -~~~~~~~i~~~~~~~~p~~~~-------------~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 253 -NQDVVEMIRNRQVLPCPDDCP-------------AWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp -HHHHHHHHHTTCCCCCCTTCC-------------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred -HHHHHHHHHCCCCCCCCCCCH-------------HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf -999999998199899962036-------------99999999975879657929999999998531
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=400.94 Aligned_cols=262 Identities=23% Similarity=0.385 Sum_probs=208.6
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 30027557761189993589999997299999912898321089999999998615689711488999958914899950
Q 006522 347 AYVVGKSKNGIMYKVVVGRGSGMGAPTVVAVRRLTEGDATWRFKDFESEVEAIARVQHPNIVRLKAFYYANDEKLLISDF 426 (642)
Q Consensus 347 ~~~ig~g~~g~vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 426 (642)
.+.||+|+||.||++.............||||+++.... ...++|.+|+++|++++|||||+++|+|.+.+..++||||
T Consensus 18 ~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~-~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey 96 (299)
T 4asz_A 18 KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASD-NARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEY 96 (299)
T ss_dssp EEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCH-HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred EEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 249820788299999987766677887999999677785-8999999999999858998886287999569989999985
Q ss_pred CCCCCHHHHHHCCC--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEECCCCCEEEECCC
Q ss_conf 56996888872399--------9999999999999999999999999870399995105889999123899980891125
Q 006522 427 IRNGSLYAALHAGP--------SDSLPPLPWEARLKIAQGTARGLMYIHEYSPRKYVHGNIKSTKILLDDELHPCISGFG 498 (642)
Q Consensus 427 ~~~g~L~~~l~~~~--------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrdlk~~NILld~~~~~ki~DfG 498 (642)
|++|+|.++|+..+ ......++|.+++.|+.|||+||+|||+ ++|+||||||+|||+++++.+||+|||
T Consensus 97 ~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~Ki~DFG 173 (299)
T 4asz_A 97 MKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFG 173 (299)
T ss_dssp CTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEECCCC
T ss_conf 89996899998608642111235777889999999999999999999975---990467657763898799868988730
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCHH
Q ss_conf 533479998654453025328886555679830285323248888963306779999999994-9999999999953178
Q 006522 499 LNRLLPGTSKVTKNETIVTSGTGSRISAISNVYLAPEARIYGSKFTQKCDVYSFGIVLLEILT-GRLPDAGPENDGKGLE 577 (642)
Q Consensus 499 la~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DV~SfGviL~el~t-G~~P~~~~~~~~~~l~ 577 (642)
+|+......... . .....||..|||||++.. ..++.++|||||||++|||+| |+.||.+.. ..
T Consensus 174 la~~~~~~~~~~-------~---~~~~~gt~~ymAPE~~~~-~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~-----~~ 237 (299)
T 4asz_A 174 MSRDVYSTDYYR-------V---GGHTMLPIRWMPPESIMY-RKFTTESDVWSLGVVLWEIFTYGKQPWYQLS-----NN 237 (299)
T ss_dssp CHHHHTGGGCEE-------E---TTTEEECGGGCCHHHHHH-CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC-----HH
T ss_pred CCEECCCCCCEE-------E---CCCEECCHHHCCHHHHCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC-----HH
T ss_conf 010067887416-------6---475134701038898707-9997036677889999999808999999989-----99
Q ss_pred HHHHHHHHCCC-CCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999985159-87533384554110479999999999986377899999997899999985424
Q 006522 578 SLVRKAFRERR-PLSEVIDPALVKEIHAKRQVLATFHIALNCTELDPEFRPRMRTVSESLDRVKL 641 (642)
Q Consensus 578 ~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~l~~~C~~~dP~~RPt~~ev~~~L~~i~~ 641 (642)
+.......... +.++.+++ ++.+++.+||+.||++||||.+|++.|+++.+
T Consensus 238 ~~~~~i~~~~~~~~p~~~~~-------------~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 238 EVIECITQGRVLQRPRTCPQ-------------EVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp HHHHHHHHTCCCCCCTTCCH-------------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHH-------------HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 99999980898899741439-------------99999999768796689299999999987776
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=390.80 Aligned_cols=255 Identities=25% Similarity=0.380 Sum_probs=198.9
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCC-CCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 30027557761189993589999997299999912898-32108999999999861568971148899995891489995
Q 006522 347 AYVVGKSKNGIMYKVVVGRGSGMGAPTVVAVRRLTEGD-ATWRFKDFESEVEAIARVQHPNIVRLKAFYYANDEKLLISD 425 (642)
Q Consensus 347 ~~~ig~g~~g~vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 425 (642)
...||+|+||.||+|.... .||||.++... .....+.|.+|+.+|++++|||||+++|+|.. +..++|||
T Consensus 41 ~~~iG~G~fG~Vy~~~~~~--------~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 41 STRIGSGSFGTVYKGKWHG--------DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp EEECCCCSSSEEEEEESSS--------EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred EEEEEECCCCEEEEEEECC--------CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEE
T ss_conf 4498208886899999899--------68999997268999999999999999985899887469999978-95899997
Q ss_pred ECCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEECCCCCEEEECCCCCCCCCC
Q ss_conf 05699688887239999999999999999999999999998703999951058899991238999808911255334799
Q 006522 426 FIRNGSLYAALHAGPSDSLPPLPWEARLKIAQGTARGLMYIHEYSPRKYVHGNIKSTKILLDDELHPCISGFGLNRLLPG 505 (642)
Q Consensus 426 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrdlk~~NILld~~~~~ki~DfGla~~~~~ 505 (642)
||++|+|.++|+.... +++|..++.|+.|||.||+|||+ ++|+||||||+|||+++++.+||+|||+|+....
T Consensus 112 y~~gGsL~~~l~~~~~----~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 184 (307)
T 3omv_A 112 WCEGSSLYKHLHVQET----KFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSR 184 (307)
T ss_dssp CCSSCBHHHHHHTSCC----CCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC---
T ss_pred CCCCCCHHHHHHHCCC----CCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 4899878898752489----99999999999999999999977---9952785578997888999089944157542466
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9865445302532888655567983028532324--88889633067799999999949999999999953178999999
Q 006522 506 TSKVTKNETIVTSGTGSRISAISNVYLAPEARIY--GSKFTQKCDVYSFGIVLLEILTGRLPDAGPENDGKGLESLVRKA 583 (642)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~~DV~SfGviL~el~tG~~P~~~~~~~~~~l~~~~~~~ 583 (642)
.... ......+||+.|||||++.. ...++.++|||||||+||||+||+.||.+... ... +...
T Consensus 185 ~~~~----------~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~----~~~-~~~~ 249 (307)
T 3omv_A 185 WSGS----------QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN----RDQ-IIFM 249 (307)
T ss_dssp -------------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC----HHH-HHHH
T ss_pred CCCC----------EEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH----HHH-HHHH
T ss_conf 7764----------031564468772498786146899878687757289999999978899899996----999-9999
Q ss_pred HHCCCCCC--CCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 85159875--33384554110479999999999986377899999997899999985424
Q 006522 584 FRERRPLS--EVIDPALVKEIHAKRQVLATFHIALNCTELDPEFRPRMRTVSESLDRVKL 641 (642)
Q Consensus 584 ~~~~~~~~--~~~d~~l~~~~~~~~~~~~~~~l~~~C~~~dP~~RPt~~ev~~~L~~i~~ 641 (642)
.......+ ..+.+. ....+.+++.+||+.||++||||.+|++.|+.++.
T Consensus 250 ~~~~~~~p~~~~~~~~---------~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 250 VGRGYASPDLSKLYKN---------CPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp HHTTCCCCCSTTSCTT---------SCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred HHCCCCCCCCCCCCCC---------CHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHC
T ss_conf 9658888872003544---------56999999999757797689098999999999745
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=388.99 Aligned_cols=264 Identities=22% Similarity=0.343 Sum_probs=208.7
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCC-CCEEEEEEEEEEC-CCEEEEE
Q ss_conf 3002755776118999358999999729999991289832108999999999861568-9711488999958-9148999
Q 006522 347 AYVVGKSKNGIMYKVVVGRGSGMGAPTVVAVRRLTEGDATWRFKDFESEVEAIARVQH-PNIVRLKAFYYAN-DEKLLIS 424 (642)
Q Consensus 347 ~~~ig~g~~g~vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~l~~~~~~~-~~~~lv~ 424 (642)
...||+|+||.||+|...........+.||||++.........+.|.+|+.+|.+++| ||||+++|+|... +..++||
T Consensus 69 ~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV~ 148 (353)
T 4ase_A 69 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIV 148 (353)
T ss_dssp EEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEE
T ss_pred EEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEE
T ss_conf 20982178959999998688854477599999976235868999999999999975799848778899994697799999
Q ss_pred EECCCCCHHHHHHCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEECCCCCEE
Q ss_conf 505699688887239999-----------999999999999999999999998703999951058899991238999808
Q 006522 425 DFIRNGSLYAALHAGPSD-----------SLPPLPWEARLKIAQGTARGLMYIHEYSPRKYVHGNIKSTKILLDDELHPC 493 (642)
Q Consensus 425 e~~~~g~L~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrdlk~~NILld~~~~~k 493 (642)
|||++|+|.++|+..... ....++|..++.|+.|||+||+|||+ ++|+||||||+|||+++++.+|
T Consensus 149 Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~~~vK 225 (353)
T 4ase_A 149 EFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVK 225 (353)
T ss_dssp ECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEE
T ss_pred ECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCCCCEEECCCCCEE
T ss_conf 8389897999997435666543334101103568999999999999999876762---7843574672113057999789
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCC
Q ss_conf 91125533479998654453025328886555679830285323248888963306779999999994-99999999999
Q 006522 494 ISGFGLNRLLPGTSKVTKNETIVTSGTGSRISAISNVYLAPEARIYGSKFTQKCDVYSFGIVLLEILT-GRLPDAGPEND 572 (642)
Q Consensus 494 i~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DV~SfGviL~el~t-G~~P~~~~~~~ 572 (642)
|+|||+|+.+..+..... .....||..|||||++.. ..++.++|||||||+||||+| |+.||.+....
T Consensus 226 i~DFGlar~~~~~~~~~~----------~~~~~gt~~ymAPE~l~~-~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~ 294 (353)
T 4ase_A 226 ICDFGLARDIYKDPDYVR----------KGDARLPLKWMAPETIFD-RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID 294 (353)
T ss_dssp ECCCGGGSCTTTCTTSEE----------ETTEEECGGGCCHHHHHH-CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS
T ss_pred ECCCHHHHHCCCCCCCEE----------ECCCCCCCCCCCHHHHHC-CCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 796543222456887203----------254014666569899946-999975537406899999981899999998989
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 53178999999851598753338455411047999999999998637789999999789999998542
Q 006522 573 GKGLESLVRKAFRERRPLSEVIDPALVKEIHAKRQVLATFHIALNCTELDPEFRPRMRTVSESLDRVK 640 (642)
Q Consensus 573 ~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~l~~~C~~~dP~~RPt~~ev~~~L~~i~ 640 (642)
. .+...+... .+.+.++.++++ +.+++.+||+.||++||||.+|++.|+.+.
T Consensus 295 ~-~~~~~i~~g--~~~~~p~~~~~~-------------~~~li~~c~~~dP~~RPt~~eil~~L~~ll 346 (353)
T 4ase_A 295 E-EFCRRLKEG--TRMRAPDYTTPE-------------MYQTMLDCWHGEPSQRPTFSELVEHLGNLL 346 (353)
T ss_dssp H-HHHHHHHHT--CCCCCCTTCCHH-------------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred H-HHHHHHHCC--CCCCCCCCCCHH-------------HHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 9-999999738--988888657899-------------999999976869667939999999999999
No 6
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=387.09 Aligned_cols=267 Identities=21% Similarity=0.278 Sum_probs=198.7
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECC----CEEE
Q ss_conf 300275577611899935899999972999999128983210899999999986156897114889999589----1489
Q 006522 347 AYVVGKSKNGIMYKVVVGRGSGMGAPTVVAVRRLTEGDATWRFKDFESEVEAIARVQHPNIVRLKAFYYAND----EKLL 422 (642)
Q Consensus 347 ~~~ig~g~~g~vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----~~~l 422 (642)
.+.||+|+||.||+|... | ..||||++..... ....+..|+..+.+++|||||+++|+|...+ ..++
T Consensus 8 ~~~iG~G~fG~Vy~~~~~-g------~~VAvK~l~~~~~--~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~l 78 (303)
T 3hmm_A 8 QESIGKGRFGEVWRGKWR-G------EEVAVKIFSSREE--RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 78 (303)
T ss_dssp EEEEEECSSSEEEEEEET-T------EEEEEEEECGGGH--HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred EEEEEECCCEEEEEEEEC-C------EEEEEEEECCCCH--HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEE
T ss_conf 789840899399999999-9------8999999883133--669999999998608999887099999846887237887
Q ss_pred EEEECCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCEECCCCCCCEEECCCCCEEEECC
Q ss_conf 995056996888872399999999999999999999999999987039-----999510588999912389998089112
Q 006522 423 ISDFIRNGSLYAALHAGPSDSLPPLPWEARLKIAQGTARGLMYIHEYS-----PRKYVHGNIKSTKILLDDELHPCISGF 497 (642)
Q Consensus 423 v~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~iiHrdlk~~NILld~~~~~ki~Df 497 (642)
|||||++|+|.++++.. +++|..+.+|+.|+|+||+|||+.+ .++|+||||||+|||++.++.+||+||
T Consensus 79 V~Ey~~~gsL~~~l~~~------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DF 152 (303)
T 3hmm_A 79 VSDYHEHGSLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL 152 (303)
T ss_dssp EEECCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCC
T ss_pred EECCCCCCCHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEEC
T ss_conf 75178999689999757------999899999999999999999985240047898762467842089988997899847
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 5533479998654453025328886555679830285323248-----88896330677999999999499999999999
Q 006522 498 GLNRLLPGTSKVTKNETIVTSGTGSRISAISNVYLAPEARIYG-----SKFTQKCDVYSFGIVLLEILTGRLPDAGPEND 572 (642)
Q Consensus 498 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~~DV~SfGviL~el~tG~~P~~~~~~~ 572 (642)
|+|+........ .........||..|||||++... ..++.++|||||||+||||+||+.|+......
T Consensus 153 Gla~~~~~~~~~--------~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~ 224 (303)
T 3hmm_A 153 GLAVRHDSATDT--------IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDY 224 (303)
T ss_dssp TTCEEEETTTTE--------ESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCC
T ss_pred CCCCCCCCCCCC--------EEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 987455677773--------221046424664626988845654556776570676664799999998789987766522
Q ss_pred ----------CCCHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf ----------5317899999985159875333845541104799999999999863778999999978999999854249
Q 006522 573 ----------GKGLESLVRKAFRERRPLSEVIDPALVKEIHAKRQVLATFHIALNCTELDPEFRPRMRTVSESLDRVKLQ 642 (642)
Q Consensus 573 ----------~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~l~~~C~~~dP~~RPt~~ev~~~L~~i~~~ 642 (642)
......+........ .+|.+.......+....+.+++.+||+.||++||||.||++.|+++.++
T Consensus 225 ~~p~~~~~~~~~~~~~~~~~~~~~~------~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 225 QLPYYDLVPSDPSVEEMRKVVCEQK------LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp CCTTTTTSCSSCCHHHHHHHHTTSC------CCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCCCHHCCCCCCHHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 3531002545430999999875025------7998876556658999999999997605975795999999999988987
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=377.01 Aligned_cols=241 Identities=20% Similarity=0.283 Sum_probs=196.6
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEEEC
Q ss_conf 00275577611899935899999972999999128983210899999999986156897114889999589148999505
Q 006522 348 YVVGKSKNGIMYKVVVGRGSGMGAPTVVAVRRLTEGDATWRFKDFESEVEAIARVQHPNIVRLKAFYYANDEKLLISDFI 427 (642)
Q Consensus 348 ~~ig~g~~g~vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 427 (642)
..||+|+||.||++....++ ..||||++...... ..+.+.+|+.+|++++|||||++++++.+.+..|+|||||
T Consensus 80 ~~iG~G~fG~V~~a~~~~tg-----~~vAiK~i~~~~~~-~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 80 IKIGEGSTGIVCIATVRSSG-----KLVAVKKMDLRKQQ-RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp EEEEECSSCEEEEEEETTTC-----CEEEEEEEEGGGCS-SGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred EEEECCCCEEEEEEEECCCC-----CEEEEEEEECCCHH-HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 79602728299999998999-----89999998527656-8999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf 69968888723999999999999999999999999999870399995105889999123899980891125533479998
Q 006522 428 RNGSLYAALHAGPSDSLPPLPWEARLKIAQGTARGLMYIHEYSPRKYVHGNIKSTKILLDDELHPCISGFGLNRLLPGTS 507 (642)
Q Consensus 428 ~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrdlk~~NILld~~~~~ki~DfGla~~~~~~~ 507 (642)
++|+|.+++... .+++..+..|+.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+|+.+....
T Consensus 154 ~gg~L~~~l~~~------~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 224 (346)
T 4fih_A 154 EGGALTDIVTHT------RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV 224 (346)
T ss_dssp TTEEHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS
T ss_pred CCCCHHHHHHCC------CCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCC
T ss_conf 998089998718------98999999999999999999998---883556278899788799988990275753667887
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 65445302532888655567983028532324888896330677999999999499999999999531789999998515
Q 006522 508 KVTKNETIVTSGTGSRISAISNVYLAPEARIYGSKFTQKCDVYSFGIVLLEILTGRLPDAGPENDGKGLESLVRKAFRER 587 (642)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DV~SfGviL~el~tG~~P~~~~~~~~~~l~~~~~~~~~~~ 587 (642)
. .....+||+.|||||++. +..|+.++||||+||++|||+||+.||.+. ...+.........
T Consensus 225 ~------------~~~~~~GTp~YmAPEvl~-~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~~~~~~i~~~~ 286 (346)
T 4fih_A 225 P------------RRKSLVGTPYWMAPELIS-RLPYGPEVDIWSLGIMVIEMVDGEPPYFNE-----PPLKAMKMIRDNL 286 (346)
T ss_dssp C------------CBCCCCSCGGGCCHHHHT-TCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSS
T ss_pred C------------CCCCCCCCCCCCCHHHHC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHCCC
T ss_conf 7------------534656275827999977-999996899999999999999787998985-----9999999997179
Q ss_pred CC---CCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 98---753338455411047999999999998637789999999789999
Q 006522 588 RP---LSEVIDPALVKEIHAKRQVLATFHIALNCTELDPEFRPRMRTVSE 634 (642)
Q Consensus 588 ~~---~~~~~d~~l~~~~~~~~~~~~~~~l~~~C~~~dP~~RPt~~ev~~ 634 (642)
.+ ....+++ .+.+++.+||..||++|||+.|+++
T Consensus 287 ~~~~~~~~~~s~-------------~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 287 PPRLKNLHKVSP-------------SLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp CCCCSCGGGSCH-------------HHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCCCCCCH-------------HHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 998875022999-------------9999999986799568909999960
No 8
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=376.93 Aligned_cols=246 Identities=22% Similarity=0.316 Sum_probs=201.4
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCC-CCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 30027557761189993589999997299999912898-32108999999999861568971148899995891489995
Q 006522 347 AYVVGKSKNGIMYKVVVGRGSGMGAPTVVAVRRLTEGD-ATWRFKDFESEVEAIARVQHPNIVRLKAFYYANDEKLLISD 425 (642)
Q Consensus 347 ~~~ig~g~~g~vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 425 (642)
...||+|+||.||++.....+ +.||||.+.... .....+.|.+|+++|++++|||||++++++.+.+..|+|||
T Consensus 29 ~~~lG~G~fg~V~~a~~~~~~-----~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 29 LQKIGEGSFGKAILVKSTEDG-----RQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp EEEC------CEEEEEETTTC-----CEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCEEEEEEEECCCC-----CEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 479702779399999988999-----899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEECCCCCEEEECCCCCCCCCC
Q ss_conf 05699688887239999999999999999999999999998703999951058899991238999808911255334799
Q 006522 426 FIRNGSLYAALHAGPSDSLPPLPWEARLKIAQGTARGLMYIHEYSPRKYVHGNIKSTKILLDDELHPCISGFGLNRLLPG 505 (642)
Q Consensus 426 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrdlk~~NILld~~~~~ki~DfGla~~~~~ 505 (642)
||++|+|.+++..... ..+++.....|+.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+|+.+..
T Consensus 104 y~~gg~L~~~i~~~~~---~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 177 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKG---VLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS 177 (350)
T ss_dssp CCTTCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred CCCCCCHHHHHHHCCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCCCHHHEEECCCCCEEECCCCCCEEECC
T ss_conf 8899839999997389---999789999999999999999998---9915135978997987899989764652144068
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 98654453025328886555679830285323248888963306779999999994999999999995317899999985
Q 006522 506 TSKVTKNETIVTSGTGSRISAISNVYLAPEARIYGSKFTQKCDVYSFGIVLLEILTGRLPDAGPENDGKGLESLVRKAFR 585 (642)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DV~SfGviL~el~tG~~P~~~~~~~~~~l~~~~~~~~~ 585 (642)
... ..+..+||+.|||||++. +..++.++||||+||++|||+||+.||.+. ...+.......
T Consensus 178 ~~~------------~~~~~~GT~~YmAPE~l~-~~~y~~~~DiwSlGvilyemltG~~PF~~~-----~~~~~~~~i~~ 239 (350)
T 4b9d_A 178 TVE------------LARACIGTPYYLSPEICE-NKPYNNKSDIWALGCVLYELCTLKHAFEAG-----SMKNLVLKIIS 239 (350)
T ss_dssp HHH------------HHHHHHSCCTTCCHHHHT-TCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHH
T ss_pred CCC------------CCCCCCCCCCCCCHHHHC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHC
T ss_conf 854------------101457883603999987-999895999999999999999787998996-----99999999980
Q ss_pred CCC-CCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 159-8753338455411047999999999998637789999999789999
Q 006522 586 ERR-PLSEVIDPALVKEIHAKRQVLATFHIALNCTELDPEFRPRMRTVSE 634 (642)
Q Consensus 586 ~~~-~~~~~~d~~l~~~~~~~~~~~~~~~l~~~C~~~dP~~RPt~~ev~~ 634 (642)
... +....++++ +.+++.+||+.||++|||+.|+++
T Consensus 240 ~~~~~~~~~~s~~-------------~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 240 GSFPPVSLHYSYD-------------LRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp TCCCCCCTTSCHH-------------HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCCCCCCCHH-------------HHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 8999997557999-------------999999985589667908999963
No 9
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=376.66 Aligned_cols=242 Identities=20% Similarity=0.281 Sum_probs=197.4
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 30027557761189993589999997299999912898321089999999998615689711488999958914899950
Q 006522 347 AYVVGKSKNGIMYKVVVGRGSGMGAPTVVAVRRLTEGDATWRFKDFESEVEAIARVQHPNIVRLKAFYYANDEKLLISDF 426 (642)
Q Consensus 347 ~~~ig~g~~g~vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 426 (642)
...||+|+||.||++.....+ ..||||++...... ..+.+.+|+.+|++++|||||++++++.+.+..|+||||
T Consensus 156 ~~~iG~G~fG~V~~a~~~~tg-----~~vAiK~i~~~~~~-~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 156 FIKIGEGSTGIVCIATVRSSG-----KLVAVKKMDLRKQQ-RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp EEEEEECSSCEEEEEEETTTC-----CEEEEEEEESTTCS-SGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred EEEECCCCCCEEEEEEECCCC-----CEEEEEEEECCCHH-HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 169624818489999999999-----89999998625546-899999999999857998987168999989999999969
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 56996888872399999999999999999999999999987039999510588999912389998089112553347999
Q 006522 427 IRNGSLYAALHAGPSDSLPPLPWEARLKIAQGTARGLMYIHEYSPRKYVHGNIKSTKILLDDELHPCISGFGLNRLLPGT 506 (642)
Q Consensus 427 ~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrdlk~~NILld~~~~~ki~DfGla~~~~~~ 506 (642)
|++|+|.+++... .+++..+..|+.||+.||+|||+ ++|+||||||+|||++.++.+||+|||+|+.+...
T Consensus 230 ~~gG~L~~~i~~~------~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~ 300 (423)
T 4fie_A 230 LEGGALTDIVTHT------RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE 300 (423)
T ss_dssp CTTEEHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCSS
T ss_pred CCCCCHHHHHHCC------CCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf 8998289887616------98999999999999999999998---89044657877789858999898037265477788
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 86544530253288865556798302853232488889633067799999999949999999999953178999999851
Q 006522 507 SKVTKNETIVTSGTGSRISAISNVYLAPEARIYGSKFTQKCDVYSFGIVLLEILTGRLPDAGPENDGKGLESLVRKAFRE 586 (642)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DV~SfGviL~el~tG~~P~~~~~~~~~~l~~~~~~~~~~ 586 (642)
.. .....+||..|||||++. +..|+.++||||+||++|||++|+.||.+.. ..+........
T Consensus 301 ~~------------~~~~~~GTp~YmAPEvl~-~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-----~~~~~~~i~~~ 362 (423)
T 4fie_A 301 VP------------RRKSLVGTPYWMAPELIS-RLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP-----PLKAMKMIRDN 362 (423)
T ss_dssp CC------------CBCCCEECTTTCCHHHHT-TCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-----HHHHHHHHHHS
T ss_pred CC------------CCCCCCCCCCCCCHHHHC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHHCC
T ss_conf 76------------434666474727999977-9999968999999999999997879989869-----99999999727
Q ss_pred CCC---CCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 598---753338455411047999999999998637789999999789999
Q 006522 587 RRP---LSEVIDPALVKEIHAKRQVLATFHIALNCTELDPEFRPRMRTVSE 634 (642)
Q Consensus 587 ~~~---~~~~~d~~l~~~~~~~~~~~~~~~l~~~C~~~dP~~RPt~~ev~~ 634 (642)
..+ ....+++ .+.+++.+||..||++|||+.|+++
T Consensus 363 ~~~~~~~~~~~s~-------------~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 363 LPPRLKNLHKVSP-------------SLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp CCCCCSCTTSSCH-------------HHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCCCCCCCH-------------HHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 9988765012999-------------9999999986789568909999960
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=374.98 Aligned_cols=251 Identities=20% Similarity=0.206 Sum_probs=199.0
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 30027557761189993589999997299999912898321089999999998615689711488999958914899950
Q 006522 347 AYVVGKSKNGIMYKVVVGRGSGMGAPTVVAVRRLTEGDATWRFKDFESEVEAIARVQHPNIVRLKAFYYANDEKLLISDF 426 (642)
Q Consensus 347 ~~~ig~g~~g~vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 426 (642)
...||+|+||.||++.....+ ..||||+++.... ..+|+.++++++|||||++++++.+.+..|+||||
T Consensus 63 ~~~lG~G~fG~Vy~a~~~~~g-----~~vAiK~i~~~~~------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 63 QPRVGRGSFGEVHRMKDKQTG-----FQCAVKKVRLEVF------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp EEEEEEETTEEEEEEEETTTC-----CEEEEEEEETTTC------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred CCEECCCCCEEEEEEEECCCC-----CEEEEEEECHHHH------HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 868513878099999988999-----8999999788886------99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEECCCC-CEEEECCCCCCCCCC
Q ss_conf 5699688887239999999999999999999999999998703999951058899991238999-808911255334799
Q 006522 427 IRNGSLYAALHAGPSDSLPPLPWEARLKIAQGTARGLMYIHEYSPRKYVHGNIKSTKILLDDEL-HPCISGFGLNRLLPG 505 (642)
Q Consensus 427 ~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrdlk~~NILld~~~-~~ki~DfGla~~~~~ 505 (642)
|++|+|.+++...+ ++++..+..|+.||+.||+|||+ ++|+||||||+|||++.++ .+||+|||+|+.+..
T Consensus 132 ~~gg~L~~~l~~~~-----~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~ 203 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG-----CLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQP 203 (336)
T ss_dssp CTTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC--
T ss_pred CCCCCHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCEECCCCHHHEEEECCCCEEEEEECCCCEECCC
T ss_conf 59986999998769-----99999999999999999999998---89042616778879958999799962787768567
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 98654453025328886555679830285323248888963306779999999994999999999995317899999985
Q 006522 506 TSKVTKNETIVTSGTGSRISAISNVYLAPEARIYGSKFTQKCDVYSFGIVLLEILTGRLPDAGPENDGKGLESLVRKAFR 585 (642)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DV~SfGviL~el~tG~~P~~~~~~~~~~l~~~~~~~~~ 585 (642)
..... ........+||+.|||||++.. ..++.++||||+||++|||+||+.||.+..... .+ .....
T Consensus 204 ~~~~~-------~~~~~~~~~GT~~YmAPE~~~~-~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~-~~----~~i~~ 270 (336)
T 4g3f_A 204 DGLGK-------SLLTGDYIPGTETHMAPEVVMG-KPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP-LC----LKIAS 270 (336)
T ss_dssp -----------------CCCCCCGGGCCHHHHTT-CCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC-CH----HHHHH
T ss_pred CCCCC-------CEECCCCCCCCCCCCCHHHHCC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HH----HHHHC
T ss_conf 87654-------0221785455802008999889-998908999999999999997869989989999-99----99980
Q ss_pred CCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 159875333845541104799999999999863778999999978999999854
Q 006522 586 ERRPLSEVIDPALVKEIHAKRQVLATFHIALNCTELDPEFRPRMRTVSESLDRV 639 (642)
Q Consensus 586 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~l~~~C~~~dP~~RPt~~ev~~~L~~i 639 (642)
...+.. .+.+.+. ..+.+++.+||+.||++|||+.|+++.|...
T Consensus 271 ~~~~~~-~~~~~~s---------~~~~~li~~~L~~dP~~R~sa~el~~~l~~~ 314 (336)
T 4g3f_A 271 EPPPIR-EIPPSCA---------PLTAQAIQEGLRKEPVHRASAMELRRKVGKA 314 (336)
T ss_dssp SCCGGG-GSCTTSC---------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCH-HCCCCCC---------HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 899800-2586679---------9999999997628976895999999999999
Done!