Query 006523
Match_columns 642
No_of_seqs 341 out of 1627
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 00:31:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0228 Beta-fructofuranosidas 100.0 8E-124 2E-128 993.6 35.6 521 109-632 41-570 (571)
2 COG1621 SacC Beta-fructosidase 100.0 7.9E-97 2E-101 807.1 46.7 443 116-631 27-486 (486)
3 TIGR01322 scrB_fam sucrose-6-p 100.0 2.8E-89 6.1E-94 755.9 48.1 413 116-600 12-445 (445)
4 smart00640 Glyco_32 Glycosyl h 100.0 5.9E-87 1.3E-91 735.7 49.1 422 122-589 1-437 (437)
5 PF00251 Glyco_hydro_32N: Glyc 100.0 1.9E-77 4.1E-82 632.2 26.3 299 122-440 1-308 (308)
6 cd08996 GH32_B_Fructosidase Gl 100.0 3.4E-67 7.3E-72 549.5 33.6 286 128-443 1-298 (298)
7 cd08995 GH32_Aec43_like Glycos 100.0 3.9E-54 8.5E-59 447.3 30.5 266 131-433 1-278 (280)
8 cd08979 GH_J Glycosyl hydrolas 100.0 1.4E-37 3E-42 319.6 27.4 242 132-405 8-264 (276)
9 cd08772 GH43_62_32_68 Glycosyl 100.0 1.1E-34 2.3E-39 298.3 28.0 268 131-426 1-285 (286)
10 cd08997 GH68 Glycosyl hydrolas 99.9 1E-24 2.3E-29 232.5 25.2 192 131-341 8-254 (349)
11 cd08994 GH43_like_2 Glycosyl h 99.9 2.8E-21 6.1E-26 202.1 19.4 189 121-318 4-282 (291)
12 cd08984 GH43_5 Glycosyl hydrol 99.8 8.7E-19 1.9E-23 184.2 21.6 185 107-318 51-246 (294)
13 cd08993 GH43_DUF377 Glycosyl h 99.8 4.6E-18 9.9E-23 176.2 20.2 161 132-313 2-169 (268)
14 cd09004 GH43_bXyl Glycosyl hyd 99.8 5.7E-18 1.2E-22 175.9 19.8 192 127-353 5-197 (275)
15 cd08999 GH43_ABN_2 Glycosyl hy 99.7 1.4E-15 3E-20 158.3 21.7 186 128-344 6-200 (287)
16 cd08990 GH43_AXH_like Glycosyl 99.6 1.7E-14 3.6E-19 150.0 20.1 195 132-353 2-206 (274)
17 cd08978 GH_F Glycosyl hydrolas 99.6 1.9E-13 4.2E-18 139.9 21.0 191 132-353 2-201 (271)
18 cd08991 GH43_bXyl_2 Glycosyl h 99.5 8.7E-13 1.9E-17 138.2 20.7 180 132-344 2-204 (294)
19 PF11837 DUF3357: Domain of un 99.5 3.4E-15 7.3E-20 134.2 -0.8 97 14-114 7-106 (106)
20 cd08992 GH43_like_1 Glycosyl h 99.5 1.3E-12 2.8E-17 139.9 17.9 171 118-296 24-241 (349)
21 cd08998 GH43_ABN_1 Glycosyl hy 99.4 5.8E-12 1.2E-16 131.9 20.5 129 130-275 1-137 (288)
22 cd08984 GH43_5 Glycosyl hydrol 99.4 1E-11 2.2E-16 130.8 19.0 169 130-318 11-193 (294)
23 cd08985 GH43_6 Glycosyl hydrol 99.3 5.5E-10 1.2E-14 116.1 24.0 197 132-364 5-211 (265)
24 cd08979 GH_J Glycosyl hydrolas 99.3 6.6E-11 1.4E-15 121.7 15.5 158 107-275 37-209 (276)
25 PF04041 DUF377: Domain of unk 99.2 6.5E-11 1.4E-15 126.0 12.0 159 135-311 36-201 (312)
26 PF04616 Glyco_hydro_43: Glyco 99.2 1.4E-09 3.1E-14 112.8 20.5 183 128-344 8-200 (286)
27 PF08244 Glyco_hydro_32C: Glyc 99.2 1.7E-10 3.6E-15 99.6 10.9 74 508-589 9-86 (86)
28 cd09000 GH43_XYL_1 Glycosyl hy 99.2 1.6E-09 3.5E-14 113.6 20.4 178 128-343 6-196 (288)
29 cd08983 GH43_4 Glycosyl hydrol 99.2 2.9E-09 6.3E-14 111.4 21.9 170 128-318 16-195 (276)
30 cd09003 GH43_AXH_1 Glycosyl hy 99.2 1.6E-09 3.4E-14 115.4 20.0 186 128-343 7-215 (311)
31 cd08992 GH43_like_1 Glycosyl h 99.1 1.6E-09 3.5E-14 116.3 18.7 189 110-317 86-309 (349)
32 cd08981 GH43_2 Glycosyl hydrol 99.0 4E-08 8.6E-13 103.7 19.5 135 128-274 4-142 (291)
33 cd08988 GH43_ABN Glycosyl hydr 98.9 7.3E-08 1.6E-12 100.9 20.0 129 132-275 2-139 (279)
34 cd08989 GH43_XYL Glycosyl hydr 98.8 3.1E-07 6.7E-12 95.7 19.5 125 128-274 6-136 (269)
35 cd08993 GH43_DUF377 Glycosyl h 98.8 4.7E-08 1E-12 101.5 11.7 98 193-299 3-104 (268)
36 cd08980 GH43_1 Glycosyl hydrol 98.7 4.9E-07 1.1E-11 94.8 18.5 187 132-353 2-204 (288)
37 cd09001 GH43_XYL_2 Glycosyl hy 98.7 5.5E-07 1.2E-11 93.8 17.5 159 128-318 9-181 (269)
38 cd08995 GH32_Aec43_like Glycos 98.6 1.2E-06 2.6E-11 91.3 15.3 152 110-275 37-200 (280)
39 cd08994 GH43_like_2 Glycosyl h 98.6 4.8E-07 1E-11 94.8 12.1 123 132-259 82-217 (291)
40 cd09002 GH43_XYL_3 Glycosyl hy 98.6 7.9E-07 1.7E-11 93.3 13.5 121 129-274 14-134 (280)
41 cd08986 GH43_7 Glycosyl hydrol 98.5 7.3E-07 1.6E-11 93.0 12.6 130 129-274 1-150 (269)
42 COG2152 Predicted glycosylase 98.5 8.8E-07 1.9E-11 92.2 12.3 150 135-300 35-192 (314)
43 PF02435 Glyco_hydro_68: Levan 98.5 7.5E-06 1.6E-10 89.6 19.6 183 131-318 63-309 (428)
44 cd08987 GH62 Glycosyl hydrolas 98.5 6.7E-06 1.5E-10 85.9 18.1 210 115-365 6-230 (303)
45 cd08982 GH43_3 Glycosyl hydrol 98.5 7.2E-06 1.6E-10 86.8 18.3 108 131-275 4-111 (295)
46 cd08978 GH_F Glycosyl hydrolas 98.5 5E-06 1.1E-10 85.2 16.3 156 127-296 56-215 (271)
47 cd08983 GH43_4 Glycosyl hydrol 98.4 2.4E-06 5.2E-11 89.6 12.0 78 238-318 4-87 (276)
48 cd08999 GH43_ABN_2 Glycosyl hy 98.4 9.4E-06 2E-10 84.6 16.2 174 110-297 37-226 (287)
49 cd08772 GH43_62_32_68 Glycosyl 98.3 1.8E-05 3.9E-10 81.3 16.2 156 129-296 59-224 (286)
50 cd08991 GH43_bXyl_2 Glycosyl h 98.3 3E-05 6.5E-10 81.3 17.2 171 112-296 32-227 (294)
51 cd08990 GH43_AXH_like Glycosyl 98.2 3.8E-05 8.2E-10 80.0 16.1 150 128-298 62-218 (274)
52 cd08986 GH43_7 Glycosyl hydrol 98.2 1.6E-05 3.6E-10 82.9 12.9 120 254-399 2-147 (269)
53 cd08996 GH32_B_Fructosidase Gl 98.1 2.4E-05 5.1E-10 82.3 13.0 154 109-275 38-201 (298)
54 PF04041 DUF377: Domain of unk 98.1 9.5E-06 2.1E-10 86.6 10.1 106 187-301 29-137 (312)
55 cd08998 GH43_ABN_1 Glycosyl hy 98.1 0.00012 2.7E-09 76.7 17.0 148 130-291 58-213 (288)
56 PF04616 Glyco_hydro_43: Glyco 97.9 0.00016 3.5E-09 75.0 13.7 171 110-295 40-221 (286)
57 cd08989 GH43_XYL Glycosyl hydr 97.8 0.00023 4.9E-09 74.3 13.4 121 240-399 1-133 (269)
58 cd09002 GH43_XYL_3 Glycosyl hy 97.8 0.0004 8.7E-09 72.9 13.7 78 239-343 7-84 (280)
59 TIGR01322 scrB_fam sucrose-6-p 97.7 0.00031 6.8E-09 78.6 13.6 155 110-275 62-225 (445)
60 cd08981 GH43_2 Glycosyl hydrol 97.7 0.00064 1.4E-08 71.9 13.5 78 252-344 4-88 (291)
61 cd08997 GH68 Glycosyl hydrolas 97.6 0.0013 2.8E-08 71.2 14.8 173 108-291 46-279 (349)
62 cd08980 GH43_1 Glycosyl hydrol 97.5 0.0023 5E-08 67.1 14.9 146 125-274 108-259 (288)
63 cd08988 GH43_ABN Glycosyl hydr 97.5 0.0038 8.2E-08 65.5 16.4 143 132-290 59-213 (279)
64 smart00640 Glyco_32 Glycosyl h 97.4 0.001 2.2E-08 74.3 12.3 155 110-275 45-215 (437)
65 COG2152 Predicted glycosylase 97.4 0.00048 1E-08 72.2 9.0 117 177-302 12-141 (314)
66 cd09004 GH43_bXyl Glycosyl hyd 97.4 0.0041 9E-08 64.7 15.3 136 132-296 68-211 (275)
67 cd08985 GH43_6 Glycosyl hydrol 97.3 0.0097 2.1E-07 62.0 17.1 141 136-299 70-215 (265)
68 cd09001 GH43_XYL_2 Glycosyl hy 97.3 0.0056 1.2E-07 63.9 15.3 127 132-291 78-207 (269)
69 cd00260 Sialidase Sialidases o 97.2 0.011 2.3E-07 63.6 16.5 167 115-298 59-240 (351)
70 cd09000 GH43_XYL_1 Glycosyl hy 97.1 0.018 3.9E-07 60.4 16.2 142 131-295 69-218 (288)
71 cd09003 GH43_AXH_1 Glycosyl hy 97.1 0.021 4.5E-07 61.1 16.5 168 111-300 54-248 (311)
72 PF13088 BNR_2: BNR repeat-lik 97.0 0.021 4.5E-07 58.9 16.1 164 115-297 31-200 (275)
73 COG3507 XynB Beta-xylosidase [ 96.6 0.0078 1.7E-07 67.8 9.5 140 162-318 56-215 (549)
74 PF03664 Glyco_hydro_62: Glyco 96.5 0.25 5.4E-06 50.7 18.2 172 120-318 13-195 (271)
75 PF13088 BNR_2: BNR repeat-lik 96.3 0.33 7.1E-06 50.0 18.5 146 141-299 1-153 (275)
76 cd08987 GH62 Glycosyl hydrolas 95.9 0.23 5.1E-06 52.5 14.9 142 132-296 80-230 (303)
77 cd08982 GH43_3 Glycosyl hydrol 95.8 0.08 1.7E-06 56.2 11.5 134 127-272 88-237 (295)
78 PF00251 Glyco_hydro_32N: Glyc 95.0 0.27 5.9E-06 52.3 12.3 137 110-260 45-190 (308)
79 cd00260 Sialidase Sialidases o 94.3 7.4 0.00016 41.7 21.6 146 158-318 45-207 (351)
80 PF13859 BNR_3: BNR repeat-lik 90.1 1.3 2.7E-05 47.7 8.8 89 193-299 124-216 (310)
81 COG3940 Predicted beta-xylosid 86.5 4 8.6E-05 41.4 8.9 109 129-245 131-248 (324)
82 PF13810 DUF4185: Domain of un 85.2 17 0.00037 39.2 13.7 157 131-299 95-275 (316)
83 PTZ00334 trans-sialidase; Prov 72.9 23 0.0005 42.6 10.7 85 193-296 263-349 (780)
84 COG3507 XynB Beta-xylosidase [ 71.5 54 0.0012 37.8 12.7 79 125-212 86-167 (549)
85 PF13810 DUF4185: Domain of un 68.7 22 0.00049 38.3 8.7 96 197-298 101-211 (316)
86 PF02435 Glyco_hydro_68: Levan 53.5 2.9E+02 0.0063 31.2 14.0 127 140-275 143-319 (428)
87 PF15176 LRR19-TM: Leucine-ric 47.6 28 0.00062 31.2 4.1 29 29-57 10-38 (102)
88 PF03664 Glyco_hydro_62: Glyco 30.2 6.7E+02 0.015 26.4 13.3 70 132-211 78-153 (271)
89 PF10898 DUF2716: Protein of u 30.1 34 0.00075 32.7 2.0 36 114-149 81-120 (143)
90 COG1621 SacC Beta-fructosidase 27.8 4.6E+02 0.01 30.2 10.7 94 137-237 107-204 (486)
91 PF00337 Gal-bind_lectin: Gala 26.5 1.1E+02 0.0024 28.0 4.8 29 563-592 77-105 (133)
92 PF06439 DUF1080: Domain of Un 24.6 3.3E+02 0.0071 25.9 7.9 57 567-626 126-184 (185)
93 PF12273 RCR: Chitin synthesis 22.9 77 0.0017 29.4 2.9 10 140-149 81-90 (130)
94 PF12111 PNPase_C: Polyribonuc 22.2 30 0.00064 25.8 0.0 11 115-125 7-17 (39)
No 1
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.1e-124 Score=993.58 Aligned_cols=521 Identities=50% Similarity=0.882 Sum_probs=483.6
Q ss_pred CcccccccccceeeeecCCCCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCccCCC
Q 006523 109 WTNAMFTWQRTSFHFQPEKNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDIN 188 (642)
Q Consensus 109 ~~~~~~~w~Rp~yHf~P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~ 188 (642)
+++...+++||.|||||++|||||| +|++|+|||||||||.+++||+++||||||+|||||+.+|+||.|++++|.+
T Consensus 41 ~~~~~n~~~Rp~~HFqP~k~wMN~P---~~ykG~yHLFyQyNP~gavwg~ivWGHavSkDLinW~~lp~Ai~Ps~~~din 117 (571)
T KOG0228|consen 41 PSNTVNQPDRPGFHFQPPKGWMNDP---MYYKGKYHLFYQYNPKGAVWGNIVWGHAVSKDLINWEALPPAIAPSEWFDIN 117 (571)
T ss_pred ccccccccCCceeecCCCcccccCc---cccCcEEEEEEecCCCCceeeeeEeeeecchhhccccccCcccCCCCccccC
Confidence 6777788999999999999999988 8999999999999999999999999999999999999999999999999999
Q ss_pred CeEeeeEEEccCCcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCC--CCCCCCCCCCCEEEEeCCCC
Q 006523 189 GVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPP--RHIGPKDFRDPTTAWAGPDG 266 (642)
Q Consensus 189 Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p--~g~~~~~fRDP~V~w~~~~g 266 (642)
|||||||+++++|+.++||||...+..|+|++|++.|.+||.|+.|+|.++||++.++ .+++...||||+++|++++|
T Consensus 118 g~wSGSati~~~~~~vilytg~d~~~rqVqn~a~p~d~sdp~l~~w~k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dg 197 (571)
T KOG0228|consen 118 GCWSGSATIDPNNSPVILYTGIDPNNRQVQNYAYPKDVSDPQLIAWSKDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDG 197 (571)
T ss_pred ccccceEEEccCCCeEEEecccCcCceEEEEEeccCCCCchhhheeecCCCceeeccccccCCChhhccCCceeeecCCC
Confidence 9999999999999999999999887789999999999999999999999999999988 78888999999999999999
Q ss_pred eEEEEEeeecCCeeEEEEEEeCCCCCCEEcccccccCCCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCCCC
Q 006523 267 KWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTK 346 (642)
Q Consensus 267 ~w~MviGa~~~~~G~~~lY~S~Dl~~W~~~~~l~~~~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~~~ 346 (642)
+|+|++|++.+++|.+++|+|+||++|+..+.++|....+|||||||||||+.++.+|++++..|+..|||+++|+++++
T Consensus 198 kWrm~vgsk~~q~g~a~~Y~S~Df~~W~k~~~~~h~~~~tgmwECPdffpVs~tg~~g~d~s~~~~~nkhvlkasl~gt~ 277 (571)
T KOG0228|consen 198 KWRMTVGSKIKQRGKAIIYSSDDFKHWTKSSVPLHSGDLTGMWECPDFFPVSITGTDGLDWSLFGSINKHVLKASLGGTS 277 (571)
T ss_pred cEEEEEEeecCccceEEEEeccchhhhhcccccccccCccceEECCCcEEecccCCCCceEEEeccccccccccccCCce
Confidence 99999999988899999999999999999999999888899999999999999999999999999989999999999999
Q ss_pred ceEEEEEEecCCCCcccCCCCCcccccceeeccCcccceeeEecCCCCcEEEEEeccCCCCCCCCcCCCCcccccccEEE
Q 006523 347 VDHYAIGTYNPANDKWTPDNPEEDVGIGLKWDYGRYYASKSFYDPYKKRRIVWGWINETDTESDDLEKGWASVQTIPRTV 426 (642)
Q Consensus 347 ~~~Y~iG~fd~~~~~f~p~~~~~D~g~~~~lD~G~fYA~qtf~d~~~gRrIl~GW~~~~d~~~~~~~~GWag~ltlPRel 426 (642)
+++|+||+||+++.+|+|++...++..++|+|||+|||+|||+|..++|||+|||++||++..++.++||+|+|+|||++
T Consensus 278 ~d~Y~IG~yd~~~~~fvpd~~~~~~~~dlr~Dyg~~YASkTFfds~~~rrIlwgWa~es~~~~dd~~kgw~g~qtipRki 357 (571)
T KOG0228|consen 278 NDQYFIGTYDGEKDTFVPDDGFSRVSVDLRYDYGKYYASKTFFDSVKGRRILWGWASESDYTNDDPTKGWRGLQTIPRKI 357 (571)
T ss_pred eEEEEEecccCCcceeeccCCcccccccccccchhhhhhhhhccccCCcEEEEEecccCcccccchhcccccccccceEE
Confidence 99999999999889999999888877788999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCeEEEechHHHHhhhccceeeeeEEecCCceeecccccceeeeeeEEEEEE-ecCcC-----ccccccccc-C
Q 006523 427 LYDNKTGSNVVQWPVEEIESLRQNSTVFEEVVVEPGSVVPLDIGVATQLDISAEFETE-LLGSG-----AMEEGYGCS-G 499 (642)
Q Consensus 427 ~L~~~~g~~L~q~Pv~El~~LR~~~~~~~~~~~~~g~~~~l~~~~~~~ldi~~~f~~~-l~~~~-----~~~~~~~~s-~ 499 (642)
+|++..|..|.|||++|++.||.......+..+++|+..+....++.|.|++++|++. |+... .++-.+.|. .
T Consensus 358 ~Ld~~s~k~l~qwpv~eie~Lr~~~v~~~~~~~~~g~~~~v~~~t~~q~dvev~f~~~~Leka~~~~~~~t~~~~~c~~~ 437 (571)
T KOG0228|consen 358 WLDTESGKQLTQWPVEEIEPLRLSNVKMDNKLFKPGSLNEVSGITAAQADVEVTFEVEDLEKAIVIEPSWTDPQFLCLTG 437 (571)
T ss_pred EeeccCCCcccccchheeecccccccCccccccCCceeEEecccccccccceEEEEecccccccccCccccccceeeecC
Confidence 9998678899999999999999988776677888999999999999999999999886 54321 112346684 6
Q ss_pred CcccccccCccEEEEEEcCCCCceEEEEEEeccCCCCCeeEEEeecCCCCCCCCccccccceeeeeccCCeEEEEEEEeC
Q 006523 500 GAIDRSAMGPFGLLVNAHDSLSELTPIFFRSSNTTKGTNTYFCADETRSSLAPDVFKQVHGSKVPVLQGEKLSMRILVDH 579 (642)
Q Consensus 500 g~~~r~~~g~fGl~v~ad~~~~e~t~v~f~~~~~~~g~~~~~~~Dr~rss~~~~~~~~~~g~~~pvl~~e~~~LrI~VD~ 579 (642)
+...++.+||||++++++.+++|+|+++|++.|...+-.+.+|.|.+|||++.+..|..+|..++|...++++||+||||
T Consensus 438 ~~~v~~~~gpfgl~~la~~dl~eyt~v~f~i~k~~~~~~v~~csd~~~sSl~~d~~k~~~~afvdv~~~~~islr~LiDh 517 (571)
T KOG0228|consen 438 GSSVREGLGPFGLMVLASSDLEEYTPVGFRIFKAKKKYVVLMCSDQSRSSLAEDNYKPSIGAFVDVYPHQKISLRSLIDH 517 (571)
T ss_pred CcccccCCCcceEEEEeecCcccceeeeEEEeecCCcceeEEeccCCCccccccccccceeeEEEecCCCccchhhhhhh
Confidence 77788999999999999999999999999999876533788999999999999999998999999977899999999999
Q ss_pred CeEEEEEeCCceEEEEeeecCccccCccEEEEEecCCCceEEEEEEEeecccc
Q 006523 580 SIVESFGQGGRTVITSRIYPTKAIYGAARLFLFNNATGVNVKATLKIWRLNSA 632 (642)
Q Consensus 580 S~vEvF~n~Gr~~~TsRvYP~~~~~~~~~i~lf~~~~~~~v~~~l~iw~m~s~ 632 (642)
||||.|+|+||+|+|+||||+.++..++.+|+||++.......++.+|+|+++
T Consensus 518 sivEsyg~~G~t~iTsrvyp~~ai~~~~~lf~fn~g~~~v~v~sl~aw~m~~~ 570 (571)
T KOG0228|consen 518 SIVESYGNGGKTVITSRVYPTLAIGEGAHLFVFNNGSQLVNVTSLNAWSMKNA 570 (571)
T ss_pred hhHHHhccCCcEEEEeeeeeeecccccceEEEecccccceEEEEeehhhcccC
Confidence 99999999999999999999999999999999999876644459999999876
No 2
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-97 Score=807.08 Aligned_cols=443 Identities=33% Similarity=0.643 Sum_probs=346.0
Q ss_pred cccceeeeecCCCCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCccCCCCeEeeeE
Q 006523 116 WQRTSFHFQPEKNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSA 195 (642)
Q Consensus 116 w~Rp~yHf~P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSa 195 (642)
-+||.|||+||.||||||||++|++|+|||||||||+++.||+||||||+|+|||||+++|+||.|+.+||.+|||||||
T Consensus 27 ~~Rp~yHftP~~G~mNDPNG~iy~~G~yHlFYQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~piaL~Pd~~~d~~g~ySGSA 106 (486)
T COG1621 27 PYRPQYHFTPPTGWLNDPNGLIYFDGKYHLFYQYNPFGAAHGPKHWGHAVSKDLVHWEHLPIALAPDDDYDSHGCYSGSA 106 (486)
T ss_pred CCCceeeecCCcCceECCCceeEECCEEEEEEecCCCCCCCCCceeeeeccCCcccceECCceecCCCccccCCceeeeE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEEEeccCC----CccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEE
Q 006523 196 TILPDGQIVMLYTGSTD----KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLT 271 (642)
Q Consensus 196 vv~~dG~~~~~YTG~~~----~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~Mv 271 (642)
|+ .+|.+.+||||+.+ .+.+.||+|+|+|+ .+|+|+.+|||+..|+++ +.|||||||+|. ++|+|||+
T Consensus 107 V~-~~~~l~lfytg~v~~~~~~r~~~Q~iA~s~dg-----~~f~K~~~~~i~~~p~~~-t~hFRDPKv~w~-~~~~~~~m 178 (486)
T COG1621 107 VV-DDGNLSLFYTGNVRDSNGIRQQTQCIAYSEDG-----GTFEKYSGNPIIDQPEGY-TPHFRDPKVVWD-EGGKWWMM 178 (486)
T ss_pred EE-eCCcEEEEEccceeccCCcceeEEEEEEEcCC-----CceEeccCCceecCCCcc-cccCCCCccccc-CCCcEEEE
Confidence 86 68999999999974 25789999999995 689998789999988887 799999998896 78999999
Q ss_pred Eeee-cCCeeEEEEEEeCCCCCCEEcccccccCCCCC-ceeeeceEEecccCccceeeccCCCCeEEEEeeecCCC----
Q 006523 272 IGSK-IGKTGISLVYQTTDFKTYELLDEYLHAVPGTG-MWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDT---- 345 (642)
Q Consensus 272 iGa~-~~~~G~~~lY~S~Dl~~W~~~~~l~~~~~~~g-mWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~~---- 345 (642)
+||+ .+.+|.++||+|+||++|++.++|..+....| ||||||||+|+.. ..+ .+|++..+.+..
T Consensus 179 lgAq~~~~~g~i~lY~S~DL~~W~~~g~~~~~~~~~gym~ECPdlf~l~~~--~~~--------~~~pqg~~~~~~~~~n 248 (486)
T COG1621 179 LGAQGEDLKGTILLYESDDLKNWQFTGEFGLEQGGLGYMWECPDLFELDGE--DVL--------LFWPQGLSINGGEYDN 248 (486)
T ss_pred EEEecCCCCceEEEEeCCCccCcEEEEeeccCCCceeeEEECCCeEEecCc--Cce--------EEcceeeecCCCcCCC
Confidence 9998 46789999999999999999999987644444 9999999999854 223 344444444332
Q ss_pred -CceEEEEEEecCCCCcccCCCCCcccccceeeccC-cccceeeEecCCCCcEEEEEeccCCCCC--CCCcCCCCccccc
Q 006523 346 -KVDHYAIGTYNPANDKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTE--SDDLEKGWASVQT 421 (642)
Q Consensus 346 -~~~~Y~iG~fd~~~~~f~p~~~~~D~g~~~~lD~G-~fYA~qtf~d~~~gRrIl~GW~~~~d~~--~~~~~~GWag~lt 421 (642)
....|++|+||++ +|...+.+ ..+||+| ||||+|||.++ ++|||++|||++|++. .|+...||+||||
T Consensus 249 ~~~~~Y~vG~~dg~--~f~~~~~~-----~~~LD~G~DfYApQtf~~~-dgrri~igWmg~w~~~~~~PT~~~~w~~~mT 320 (486)
T COG1621 249 IYQSGYFVGDFDGK--EFKLDDGQ-----FRELDFGFDFYAPQTFLDP-DGRRILIGWMGNWDYTNNYPTIDEGWRGAMT 320 (486)
T ss_pred cceeEEEEEeeccc--eeEecCCC-----ceecccCccccceeeccCC-CCCEEEEEeccCccccCCCCccccCcCccce
Confidence 2357999999987 55554432 3589999 99999999996 7999999999999987 6677789999999
Q ss_pred ccEEEEEeeCCCCeEEEechHHHHhhhccceeeeeEEecCCceeecccccceeeeeeEEEEEEecCcCcccccccccCCc
Q 006523 422 IPRTVLYDNKTGSNVVQWPVEEIESLRQNSTVFEEVVVEPGSVVPLDIGVATQLDISAEFETELLGSGAMEEGYGCSGGA 501 (642)
Q Consensus 422 lPRel~L~~~~g~~L~q~Pv~El~~LR~~~~~~~~~~~~~g~~~~l~~~~~~~ldi~~~f~~~l~~~~~~~~~~~~s~g~ 501 (642)
|||||+|+ +| +|+|+|++||++||.....+..+.+......++ ....++++ ++++... |.
T Consensus 321 lpRel~l~--~~-~L~Q~Pi~~l~~lr~~~~~~~~~~~~~~~~l~~--~~~~~~~l----~~~~~~~--------~~--- 380 (486)
T COG1621 321 LPRELTLE--DG-KLYQTPVRELESLRKPEEAAHNTTLSGNSKLEL--PSGDAYEL----DLDLIWT--------DA--- 380 (486)
T ss_pred eeEEEEEc--CC-eEEecchHHHHhhhcccccccccccccceeeec--cCCccEEE----EEEeecc--------cc---
Confidence 99999995 45 899999999999999966566666655432222 22333333 1111111 10
Q ss_pred ccccccCccEEEEEEcCCCCceEEEEEEeccCCCCCeeEEEeecCCC-CCCCCccccccce--eeeeccCCeEEEEEEEe
Q 006523 502 IDRSAMGPFGLLVNAHDSLSELTPIFFRSSNTTKGTNTYFCADETRS-SLAPDVFKQVHGS--KVPVLQGEKLSMRILVD 578 (642)
Q Consensus 502 ~~r~~~g~fGl~v~ad~~~~e~t~v~f~~~~~~~g~~~~~~~Dr~rs-s~~~~~~~~~~g~--~~pvl~~e~~~LrI~VD 578 (642)
..+|+.+..+.. .+.+... ...+++||++| ... ..++. .+++..+.+++||||||
T Consensus 381 ------~~~~~~l~~~~~-----~~~~~~~------~~~l~ldR~~s~~f~-----~~~~~~r~~~~~~~~~v~l~if~D 438 (486)
T COG1621 381 ------TSFGLELRMGLN-----LVGYDVE------NETLTLDRSDSPLFT-----VQDGETRECFIENGAKVHLRIFVD 438 (486)
T ss_pred ------ceEEEEeecCcc-----eeccccc------cceEEEecccccccc-----ccCCceeeeccCCCceEEEEEEEe
Confidence 126777765543 1222111 12488999887 211 11222 23333355689999999
Q ss_pred CCeEEEEEeCCceEEEEeeecCccccCccEEEEEecCCCceEEEEEEEeeccc
Q 006523 579 HSIVESFGQGGRTVITSRIYPTKAIYGAARLFLFNNATGVNVKATLKIWRLNS 631 (642)
Q Consensus 579 ~S~vEvF~n~Gr~~~TsRvYP~~~~~~~~~i~lf~~~~~~~v~~~l~iw~m~s 631 (642)
+|+||||+|+|+.|+|+|+||... ..+|.|++.... ++...++|.+++
T Consensus 439 ~ssvEiF~NdGe~v~T~rifp~~~---~~~i~l~~~~g~--~~~~~~~~~l~~ 486 (486)
T COG1621 439 NSSVEIFINDGEKVFTSRIFPTPD---ANGISLYSDQGV--AVVQNTIWPLKS 486 (486)
T ss_pred CCeEEEEEcCCceEEEEEecCCCc---ccceEEEccCce--EEEEeeeeccCC
Confidence 999999999999999999999976 345677664432 334558888864
No 3
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=100.00 E-value=2.8e-89 Score=755.91 Aligned_cols=413 Identities=31% Similarity=0.554 Sum_probs=324.2
Q ss_pred cccceeeeecCCCCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCccCCCCeEeeeE
Q 006523 116 WQRTSFHFQPEKNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSA 195 (642)
Q Consensus 116 w~Rp~yHf~P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSa 195 (642)
.+||+|||+|+.||||||||++|++|+|||||||+|.++.||+|+||||+|+|||||+++|+||.|+.+||..|||||||
T Consensus 12 ~~rp~~H~~p~~gw~nDPng~~~~~G~yHlfyq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~G~~sGsa 91 (445)
T TIGR01322 12 EWRPTFHIQPQTGLLNDPNGLIYFKGEYHLFYQWFPFGPVHGLKSWGHYTSKDLVHWEDEGVALAPDDPYDSHGCYSGSA 91 (445)
T ss_pred CcCccCccCCCcCCccCCCcceEECCEEEEEEccCCCCCccCceEEEEEECCCccccEECCccCcCCCcccCCceEECeE
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEEEeccCC----CccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEE
Q 006523 196 TILPDGQIVMLYTGSTD----KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLT 271 (642)
Q Consensus 196 vv~~dG~~~~~YTG~~~----~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~Mv 271 (642)
++ .+|+++|||||+.. ...+.||+|+|.|+ .+|+|+. +|||.+++.....+||||+| |. .+|+|||+
T Consensus 92 v~-~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~Dg-----~~~~k~~-~pvi~~~~~~~~~~fRDP~V-~~-~~g~~~M~ 162 (445)
T TIGR01322 92 VD-NNGQLTLMYTGNVRDSDWNRESYQCLATMDDD-----GHFEKFG-IVVIELPPAGYTAHFRDPKV-WK-HNGHWYMV 162 (445)
T ss_pred Ee-eCCEEEEEEeccccCCCCCeeEEEEEEEcCCC-----CeEEECC-CceEeCCCCCCcCcCCCCcE-Ee-ECCEEEEE
Confidence 85 79999999999753 23578999999985 6999984 59998755444578999999 54 47899999
Q ss_pred Eeeec-CCeeEEEEEEeCCCCCCEEcccccccC----CCCC-ceeeeceEEecccCccceeeccCCCCeEEEEeeecCCC
Q 006523 272 IGSKI-GKTGISLVYQTTDFKTYELLDEYLHAV----PGTG-MWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDT 345 (642)
Q Consensus 272 iGa~~-~~~G~~~lY~S~Dl~~W~~~~~l~~~~----~~~g-mWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~~ 345 (642)
+|++. +..|++++|+|+||++|++.+.+.... ...| ||||||||+|++ ||||..|....
T Consensus 163 ~g~~~~~~~g~i~ly~S~Dl~~W~~~g~~~~~~~~~~~~~g~~~ECPdlf~l~~---------------k~vL~~s~~g~ 227 (445)
T TIGR01322 163 IGAQTETEKGSILLYRSKDLKNWTFVGEILGDGQNGLDDRGYMWECPDLFSLDG---------------QDVLLFSPQGL 227 (445)
T ss_pred EEEecCCCceEEEEEECCCcccCeEecccccccccccCCccceEECCeEEEECC---------------cEEEEEecccc
Confidence 99874 456899999999999999999886542 2234 999999999962 56666654321
Q ss_pred ----------CceEEEEEEecCCCCcccCCCCCcccccceeeccC-cccceeeEecCCCCcEEEEEeccCCCCCCCCcCC
Q 006523 346 ----------KVDHYAIGTYNPANDKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTESDDLEK 414 (642)
Q Consensus 346 ----------~~~~Y~iG~fd~~~~~f~p~~~~~D~g~~~~lD~G-~fYA~qtf~d~~~gRrIl~GW~~~~d~~~~~~~~ 414 (642)
....|++|+||..+.+|++++. ..++|+| +|||+|||.++ ++||||||||++|+...++.+.
T Consensus 228 ~~~~~~~~~~~~~~Y~vG~~d~~~~~f~~~~~------~~~lD~G~dfYA~qtf~~~-~gr~i~~gW~~~~~~~~~~~~~ 300 (445)
T TIGR01322 228 DASGYDYQNIYQNGYIVGQLDYEAPEFTHGTE------FHELDYGFDFYAPQTFLAP-DGRRILVAWMGLPEIDYPTDRD 300 (445)
T ss_pred CcccccccccccceeEEEEEECCCCEEecCCC------CceeccCcCceeeeeEECC-CCCEEEEEeCCCCccCCCCccC
Confidence 1256999999987789987642 2479999 89999999996 7999999999999987777789
Q ss_pred CCcccccccEEEEEeeCCCCeEEEechHHHHhhhccceeeeeEEecCCceeecccccceeeeeeEEEEEEecCcCccccc
Q 006523 415 GWASVQTIPRTVLYDNKTGSNVVQWPVEEIESLRQNSTVFEEVVVEPGSVVPLDIGVATQLDISAEFETELLGSGAMEEG 494 (642)
Q Consensus 415 GWag~ltlPRel~L~~~~g~~L~q~Pv~El~~LR~~~~~~~~~~~~~g~~~~l~~~~~~~ldi~~~f~~~l~~~~~~~~~ 494 (642)
||+|+|||||+|.|+ +| +|+|+||+||++||.+... .... .....+... ..+++|+++++. .
T Consensus 301 ~W~g~lslpR~l~l~--~g-~L~~~Pv~el~~lr~~~~~---~~~~-~~~~~~~~~-~~~~~l~~~~~~----~------ 362 (445)
T TIGR01322 301 GWAHCMTLPRELTLK--DG-KLVQTPLRELKALRTEEHI---NVFG-DQEHTLPGL-NGEFELILDLEK----D------ 362 (445)
T ss_pred CcccccccCEEEEEe--CC-eEEEEEhHHHHHHhcCccc---cccc-cccccccCC-CceEEEEEEecC----C------
Confidence 999999999999995 56 8999999999999986532 0111 111111111 123444332211 0
Q ss_pred ccccCCcccccccCccEEEEEEcCCCCceEEEEEEeccCCCCCeeEEEeecCCCCCCCCccccccceeeeeccCCeEEEE
Q 006523 495 YGCSGGAIDRSAMGPFGLLVNAHDSLSELTPIFFRSSNTTKGTNTYFCADETRSSLAPDVFKQVHGSKVPVLQGEKLSMR 574 (642)
Q Consensus 495 ~~~s~g~~~r~~~g~fGl~v~ad~~~~e~t~v~f~~~~~~~g~~~~~~~Dr~rss~~~~~~~~~~g~~~pvl~~e~~~Lr 574 (642)
. ...|||.+ .+ ..+.+.|.|+..++ .+++||++++...... .. ..+++..+++++||
T Consensus 363 ------~-----~~~~~l~~-~~--~~~~~~i~~~~~~~------~l~~dr~~~~~~~~~~-~~--~~~~~~~~~~~~l~ 419 (445)
T TIGR01322 363 ------S-----AFELGLAL-TN--KGEETLLTIDADEG------KVTLDRRSSGNLEDYG-GT--RSCPLPNTKKVSLH 419 (445)
T ss_pred ------C-----ccEEEEEE-eC--CCCeEEEEEECcCC------EEEEEccCCCCcCCcc-ce--EEEEcCCCCeEEEE
Confidence 0 12478877 44 24678888876643 4889998876321111 11 12344345789999
Q ss_pred EEEeCCeEEEEEeCCceEEEEeeecC
Q 006523 575 ILVDHSIVESFGQGGRTVITSRIYPT 600 (642)
Q Consensus 575 I~VD~S~vEvF~n~Gr~~~TsRvYP~ 600 (642)
||||+|+||||+|||+.|||+||||.
T Consensus 420 i~vD~s~vEvFvn~G~~~~t~riyp~ 445 (445)
T TIGR01322 420 IFIDKSSVEIFINDGEEVMTSRIFPD 445 (445)
T ss_pred EEEECCEEEEEECCCEEEEEEeccCC
Confidence 99999999999999999999999995
No 4
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=100.00 E-value=5.9e-87 Score=735.74 Aligned_cols=422 Identities=51% Similarity=0.941 Sum_probs=324.9
Q ss_pred eeecCCCCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCccCCCCeEeeeEEEccCC
Q 006523 122 HFQPEKNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDG 201 (642)
Q Consensus 122 Hf~P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG 201 (642)
||+|+.||||||||++|++|+|||||||+|.++.||+++||||+|+|||||+++|+||.|+.+||.+|||||||++ .+|
T Consensus 1 H~~p~~gw~NDPnGl~~~~G~yHlFyq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~aL~P~~~~d~~g~~sGsav~-~~~ 79 (437)
T smart00640 1 HFQPPKGWMNDPNGLIYYKGKYHLFYQYNPFGPVWGNIHWGHAVSKDLVHWTHLPVALAPDEWYDSNGVFSGSAVI-DPG 79 (437)
T ss_pred CCCCCcCccCCCCeeeEECCEEEEEEecCCCCCCCCCeEEEEEEcCCcceeeecCcccCCCCcCCCCcEEEEEEEE-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 577
Q ss_pred cEEEEEeccCCC------ccceE-EEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEee
Q 006523 202 QIVMLYTGSTDK------SVQVQ-NLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGS 274 (642)
Q Consensus 202 ~~~~~YTG~~~~------~~q~q-~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa 274 (642)
+++|||||+... ..+.| +.|.+.| +.+|+|+++||||.++++....+||||+|+|. ++|+|||++|+
T Consensus 80 ~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d-----~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~-~~~~~~m~~g~ 153 (437)
T smart00640 80 NLSLLYTGNVAIDTNVQVQRQAQQLAASDDL-----GGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWY-DGDKWYMVIGA 153 (437)
T ss_pred ceEEEEcCCcccccccCcccEEEEEEEECCC-----CCeeEECCCCcEEeCCCCCCCCCcCCCCccEE-CCCEEEEEEEE
Confidence 799999998421 12333 4555555 38999998899999766666789999999875 44799999998
Q ss_pred e-cCCeeEEEEEEeCCCCCCEEccccccc-CCCC-CceeeeceEEecccCccceeeccCCCCeEEEEeeecCCCCceEEE
Q 006523 275 K-IGKTGISLVYQTTDFKTYELLDEYLHA-VPGT-GMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVDHYA 351 (642)
Q Consensus 275 ~-~~~~G~~~lY~S~Dl~~W~~~~~l~~~-~~~~-gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~~~~~~Y~ 351 (642)
+ .+..|++++|+|+||++|++.+.++.. .... +||||||||+|++++ ...||||..|..+....+|.
T Consensus 154 ~~~~~~G~i~ly~S~Dl~~W~~~~~~~~~~~~~~g~~wECPdlf~l~~~~----------~~~~~vLi~s~~g~~~~~y~ 223 (437)
T smart00640 154 SDEDKTGIALLYRSTDLKNWTLLGELLHSGVGDTGGMWECPDLFPLPGDG----------DTSKHVLKVSPQGGSGNYYF 223 (437)
T ss_pred EecCCCeEEEEEECCCcccCeECCcccccCCCCccceEECCcEEEeCCCC----------CceeEEEEECcCCCCccEEE
Confidence 7 456799999999999999999998754 2333 599999999998543 24699999998876677999
Q ss_pred EEEecCCCCcccCCCCCcccccceeeccC-cccceeeEecCCCCcEEEEEeccCCCCC-CCCcCCCCcccccccEEEEEe
Q 006523 352 IGTYNPANDKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTE-SDDLEKGWASVQTIPRTVLYD 429 (642)
Q Consensus 352 iG~fd~~~~~f~p~~~~~D~g~~~~lD~G-~fYA~qtf~d~~~gRrIl~GW~~~~d~~-~~~~~~GWag~ltlPRel~L~ 429 (642)
+|.|+++ .+|+|+... +...+.++|+| +|||+|||.+++.+||||||||++++.. ...++.||+|+|||||||.|+
T Consensus 224 ~G~~~g~-~~f~~~~~~-~~~~~~~lD~G~dfYA~qt~~~~~~~r~i~~gW~~~~~~~~~~~p~~~W~g~~tlPRel~l~ 301 (437)
T smart00640 224 VGYFDGS-DQFTPDDPE-DVGIGLRLDYGFDFYASQTFYDPDGNRRILIGWMGEWDSYADDVPTKGWAGALSLPRELTLD 301 (437)
T ss_pred EEEEcCc-eeEeECCcc-ccCccceEecCCCceeeeeeecCCCCcEEEEEecCCCccccccCCCCCccccceeCeEEEEE
Confidence 9999973 479987653 22334589999 9999999999755699999999999842 222338999999999999997
Q ss_pred eCCCCeEEEechHHHHhhhccceeeeeEEecCCceeeccc--ccceeeeeeEEEEEEecCcCcccccccccCCccccccc
Q 006523 430 NKTGSNVVQWPVEEIESLRQNSTVFEEVVVEPGSVVPLDI--GVATQLDISAEFETELLGSGAMEEGYGCSGGAIDRSAM 507 (642)
Q Consensus 430 ~~~g~~L~q~Pv~El~~LR~~~~~~~~~~~~~g~~~~l~~--~~~~~ldi~~~f~~~l~~~~~~~~~~~~s~g~~~r~~~ 507 (642)
.++| +|+|+||+||++||... ......+..+....+.. ..+.+++|+++|+.. . . + .
T Consensus 302 ~~~g-~L~~~Pv~el~~lr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~--~-----------~-~-----~ 360 (437)
T smart00640 302 KTGG-KLLQWPVEELESLRNVK-ELSNLTLKPGSVNELLGLTASGDAYEIELSFEVD--S-----------G-G-----A 360 (437)
T ss_pred ecCC-EEEEeecHHHHhhhCcc-cccceeecCCceeeeecccCCccEEEEEEEEEeC--C-----------C-c-----c
Confidence 5566 79999999999999542 23333443332211111 123345555554331 0 0 0 1
Q ss_pred CccEEEEEEcCCCCceEEEEEEeccCCCCCeeEEEeecCCCCCCCC-ccccccceeeeeccCCeEEEEEEEeCCeEEEEE
Q 006523 508 GPFGLLVNAHDSLSELTPIFFRSSNTTKGTNTYFCADETRSSLAPD-VFKQVHGSKVPVLQGEKLSMRILVDHSIVESFG 586 (642)
Q Consensus 508 g~fGl~v~ad~~~~e~t~v~f~~~~~~~g~~~~~~~Dr~rss~~~~-~~~~~~g~~~pvl~~e~~~LrI~VD~S~vEvF~ 586 (642)
+.|||.++++++.++.+.|.|+..++ .+++||+++..... .........+++..+++++||||||+||||||+
T Consensus 361 ~~~~l~~~~~~~~~~~~~i~~~~~~~------~l~vdR~~~~~~~~~~~~~~~~~~~~~~~~~~~~lri~vD~ssvEvf~ 434 (437)
T smart00640 361 GPFGLLVLASEDLSEQTAVYFDVSKG------TLCLDRRSSGTSNDEVFKGVRGATVPVDPGETLSLRILVDHSSVEIFA 434 (437)
T ss_pred eeEEEEEEeCCCCCceEEEEEEcCCe------EEEEecCCCCCCcccccccceeeeeecCCCCeEEEEEEEeceEEEEEe
Confidence 25899999888877889999876543 48999976642111 111111112233345789999999999999999
Q ss_pred eCC
Q 006523 587 QGG 589 (642)
Q Consensus 587 n~G 589 (642)
|||
T Consensus 435 ndG 437 (437)
T smart00640 435 NGG 437 (437)
T ss_pred CCC
Confidence 997
No 5
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=100.00 E-value=1.9e-77 Score=632.22 Aligned_cols=299 Identities=42% Similarity=0.847 Sum_probs=249.4
Q ss_pred eeecCCCCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCccCCCCeEeeeEEEccCC
Q 006523 122 HFQPEKNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDG 201 (642)
Q Consensus 122 Hf~P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG 201 (642)
||+|++||||||||++|++|+|||||||||+++.||+++||||+|+|||||+++|+||.|++++|++|||||||+++ ++
T Consensus 1 H~~p~~gw~NDPnG~~~~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~~~aL~P~~~~d~~g~~SGs~~~~-~~ 79 (308)
T PF00251_consen 1 HFTPPKGWMNDPNGLVYYDGKYHLFYQYNPFGPEWGNMHWGHATSKDLVHWEHLPVALPPDEEYDADGCFSGSAVVD-DD 79 (308)
T ss_dssp SBB-SSEEEEEEEEEEEETTEEEEEEEEETTSSSS-SBEEEEEEESSSSSEEEEEEEE-SSSGGGTTEEEEEEEEEE-TT
T ss_pred CCCCCCCCeECCccCeEeCCEEEEEeccCCCCcccceeEEEEEECCCCCCceeCCceEcccccCCcCccCcceEEEE-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875 55
Q ss_pred cEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcC-CCceecC-CCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCCe
Q 006523 202 QIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYP-GNPVLVP-PRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKT 279 (642)
Q Consensus 202 ~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~-~nPVl~~-p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~~ 279 (642)
+++|||||+.....|.|++|+|.|.+ .+|+|++ +||||.. |++ ...+||||+|+|. ++++|+|++|++....
T Consensus 80 ~~~~~YTg~~~~~~~~q~~A~s~d~~----~~w~k~~~~~pvi~~~p~~-~~~~~RDP~v~~~-~~~~~~m~~g~~~~~~ 153 (308)
T PF00251_consen 80 NLVLFYTGNNRDGKQVQCLAYSTDDG----ITWTKYPQGNPVIPEPPPG-DTTDFRDPKVFWR-EDGRWYMLLGAGRDGR 153 (308)
T ss_dssp CEEEEEEEEETTTEEEEEEEEESSTT----SSEEE-TTTCESBESSSTT-SCTSEEEEEEEEE-CTTEEEEEEEEEETTE
T ss_pred EEEEEEeccCCCCCeEEEEEEECCCC----CceEEcCCCCcEEEecccC-CCCccccCeEEEe-cCCEEEEEEeccccCc
Confidence 89999999987668999999996653 8999998 4999985 445 6799999999987 5699999999987788
Q ss_pred eEEEEEEeCCCCCCEEcccccccCC-CCCceeeeceEEecccCccceeeccCCCCeEEEEeeec----CCCCceEEEEEE
Q 006523 280 GISLVYQTTDFKTYELLDEYLHAVP-GTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASL----DDTKVDHYAIGT 354 (642)
Q Consensus 280 G~~~lY~S~Dl~~W~~~~~l~~~~~-~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~----~~~~~~~Y~iG~ 354 (642)
|++++|+|+||++|++.+.+..... ..+||||||||+|+..+.. +...+|||..|. ......+|+||+
T Consensus 154 g~i~~y~S~Dl~~W~~~~~l~~~~~~~g~~~ECPdlf~l~~~~~~-------~~~~~~vl~~s~~g~~~~~~~~~Y~vG~ 226 (308)
T PF00251_consen 154 GCILLYTSDDLIHWEYLGPLFIPGDNGGGMWECPDLFPLDGKGDG-------TGKWVWVLIFSPQGIEDNGHGTYYMVGD 226 (308)
T ss_dssp EEEEEEEESSSSSEEEEEEESEEETTTSSEEEEEEEEEEEBTTSS-------SEEEEEEEEEEEESTTTTTTEEEEEEEE
T ss_pred ceEEEEEcCCcccCceeCcccccccccccccccceEEEECCcccc-------cceEEEEEEecccccccccccceEEeEE
Confidence 9999999999999999999876443 3469999999999865210 224568999888 345678999999
Q ss_pred ecCCCCcccCCCCCcccccceeeccC-cccceeeEecCCCCcEEEEEeccCCCCCCC-CcCCCCcccccccEEEEEeeCC
Q 006523 355 YNPANDKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTESD-DLEKGWASVQTIPRTVLYDNKT 432 (642)
Q Consensus 355 fd~~~~~f~p~~~~~D~g~~~~lD~G-~fYA~qtf~d~~~gRrIl~GW~~~~d~~~~-~~~~GWag~ltlPRel~L~~~~ 432 (642)
||..+.+|+++.. ...++|+| +|||+|||.++.++||||||||+++++... ..+.||+|+|||||||+|++ +
T Consensus 227 ~d~~~~~f~~~~~-----~~~~lD~G~dfYA~qtf~~~~~~r~i~~gW~~~~~~~~~~~~~~gW~g~lslPR~l~l~~-~ 300 (308)
T PF00251_consen 227 FDFDGGTFTPDDS-----SFQRLDYGFDFYAPQTFYDPDGGRRILIGWMGEWDYNADDYPTYGWAGCLSLPRELTLKD-E 300 (308)
T ss_dssp EETTTTEEEESST-----TSEESBSSSS-EEEEEEEETTTTEEEEEEEES-TTTHHHHCHGHTEE-EE---EEEEEET-T
T ss_pred ecCCCCeeeeecc-----ccceeccCccccCCchhcCCCcCcEEEEEEecCCCcccccCCCCCCccEEEeCEEEEEEE-C
Confidence 9877889987622 14689999 699999999985569999999999987532 23689999999999999974 3
Q ss_pred CCeEEEec
Q 006523 433 GSNVVQWP 440 (642)
Q Consensus 433 g~~L~q~P 440 (642)
+.+|+|+|
T Consensus 301 ~~~L~q~P 308 (308)
T PF00251_consen 301 GGRLYQKP 308 (308)
T ss_dssp SSSEEEEE
T ss_pred CCeEEEcC
Confidence 55899998
No 6
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=100.00 E-value=3.4e-67 Score=549.54 Aligned_cols=286 Identities=42% Similarity=0.798 Sum_probs=244.1
Q ss_pred CCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCccCCCCeEeeeEEEccCCcEEEEE
Q 006523 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLY 207 (642)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~Y 207 (642)
||||||||++|++|+||||||++|.++.||+++||||+|+||+||+++|+||.|+..+|..|||||||+++.+|+++|||
T Consensus 1 gw~nDPng~~~~~G~yhlfyq~~p~~~~~~~~~wgha~S~Dlv~W~~~~~al~p~~~~d~~g~~sGsav~~~~g~~~~~Y 80 (298)
T cd08996 1 GWMNDPNGLVYFNGKYHLFYQYNPFGPVWGNMHWGHATSKDLVHWEHLPVALAPDDPYDSGGCFSGSAVVDDNGKLVLFY 80 (298)
T ss_pred CCcccCCeeeEECCEEEEEEcCCCCCCCCCCcEEEEEEecCccceeECCcccCCCCcccCCeEEeCeEEEcCCCcEEEEE
Confidence 89999999999999999999999999999999999999999999999999999988999999999999876559999999
Q ss_pred eccCC---CccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec-CCeeEEE
Q 006523 208 TGSTD---KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-GKTGISL 283 (642)
Q Consensus 208 TG~~~---~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~-~~~G~~~ 283 (642)
||+.. ...+.|++|+|.|. +.+|+|...+|++.+ +.....+||||+|+|. +|+|+|++|++. +..|++.
T Consensus 81 Tg~~~~~~~~~~~~~lA~S~dd----g~~w~k~~~~~~~~~-~~~~~~~~RDP~V~~~--~g~~~m~~g~~~~~~~~~i~ 153 (298)
T cd08996 81 TGNVKLDGGRRQTQCLAYSTDD----GRTFTKYEGNPVIPP-PDGYTTHFRDPKVFWH--DGKWYMVLGAGTEDGTGRIL 153 (298)
T ss_pred eceeCCCCCceEEEEEEEEcCC----CCEEEECCCCceEcC-CCCCCCcccCCeEEeE--CCEEEEEEEEEecCCCcEEE
Confidence 99864 45789999999853 389999988998863 3345679999999654 499999999874 4568899
Q ss_pred EEEeCCCCCCEEccccc-ccCCCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCCC------CceEEEEEEec
Q 006523 284 VYQTTDFKTYELLDEYL-HAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDT------KVDHYAIGTYN 356 (642)
Q Consensus 284 lY~S~Dl~~W~~~~~l~-~~~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~~------~~~~Y~iG~fd 356 (642)
+|+|+||++|++.+.+. ......+|||||+||++++ +.||||..|.... ...+|++|+||
T Consensus 154 ly~S~Dl~~W~~~~~~~~~~~~~~~~~EcP~l~~l~~-------------~~k~vL~~s~~~~~~~~~~~~~~y~~G~~~ 220 (298)
T cd08996 154 LYRSDDLKNWEYLGELLTSLGDFGYMWECPDLFPLDV-------------EGKWVLIFSPQGLEPEGNGSGTGYLVGDFD 220 (298)
T ss_pred EEECCCCCCCEEcceecccCCCccceEeCCcEEEECC-------------CCeEEEEECCCCCCCCCCccceEEEEEEEE
Confidence 99999999999998874 2222335999999999973 1378888887654 34689999999
Q ss_pred CCCCcccCCCCCcccccceeeccC-cccceeeEecCCCCcEEEEEeccCCCCCCCCcCCCCcccccccEEEEEeeCCCCe
Q 006523 357 PANDKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTESDDLEKGWASVQTIPRTVLYDNKTGSN 435 (642)
Q Consensus 357 ~~~~~f~p~~~~~D~g~~~~lD~G-~fYA~qtf~d~~~gRrIl~GW~~~~d~~~~~~~~GWag~ltlPRel~L~~~~g~~ 435 (642)
+. +|+++.. ...++|+| +|||+|||.++ ++||||||||++++...+..+.||+|+|||||+|.|++ ++ +
T Consensus 221 ~~--~~~~~~~-----~~~~lD~G~dfYA~q~~~~~-~~r~i~~gW~~~~~~~~~~~~~~w~g~ls~pr~l~l~~-~~-~ 290 (298)
T cd08996 221 GT--TFTFDHT-----EFGELDYGFDFYAPQTFVDP-DGRRILIGWMGNWDYEYPTPEDGWAGCLTLPRELSLKD-GG-R 290 (298)
T ss_pred CC--CCeEecC-----CceEecCCCCeEeCceeeCC-CCCEEEEEEecCCCcCCCCCCCCceeeeEeCEEEEEcc-CC-E
Confidence 86 5555311 14589999 99999999997 79999999999999888888999999999999999974 33 8
Q ss_pred EEEechHH
Q 006523 436 VVQWPVEE 443 (642)
Q Consensus 436 L~q~Pv~E 443 (642)
|.|+||+|
T Consensus 291 l~~~P~~e 298 (298)
T cd08996 291 LYQRPVRE 298 (298)
T ss_pred EEEEeCCC
Confidence 99999986
No 7
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=100.00 E-value=3.9e-54 Score=447.29 Aligned_cols=266 Identities=23% Similarity=0.409 Sum_probs=219.4
Q ss_pred cCCccceEECCEEEEEEeeCCCCCCC--CCcEEEEEEecCccceEEcCccCCC-CCccCCCCeEeeeEEEccCCcEEEEE
Q 006523 131 NDPNGPLFYKGWYHLFYQYNPDSAVW--GNITWGHAVSADLIHWLYLPIAMVP-DQWYDINGVWTGSATILPDGQIVMLY 207 (642)
Q Consensus 131 NDPnG~~y~~G~YHLFYQ~nP~~~~w--G~~~WGHA~S~DLvhW~~~p~AL~P-d~~~D~~Gv~SGSavv~~dG~~~~~Y 207 (642)
.||. ++|++|+||||||++|.+..| ++++||||+|+||+||+++++||.| +..+|..|||+|||++ .+|+++|||
T Consensus 1 ~d~~-~~~~~G~yhlfyq~~p~~~~~~~~~~~wgha~S~Dlv~W~~~~~al~~~~~~~d~~g~~sgs~~~-~~g~~~l~Y 78 (280)
T cd08995 1 GDPM-PFYDDGTFHIFYLHDPRNGPPEGLRHPWSLLTTKDLVNYEDHGEAIPRGGDEDDDDAIGTGSVIK-GEGTYHAFY 78 (280)
T ss_pred CCcc-ceEECCEEEEEEEcCCCCCCcccCCceEEEEEccCcCccEECcceecCCCCcccccCceEeEEEe-eCCEEEEEE
Confidence 4887 999999999999999999988 8999999999999999999999988 5578899999999985 679999999
Q ss_pred eccCCC--ccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec-----CCee
Q 006523 208 TGSTDK--SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-----GKTG 280 (642)
Q Consensus 208 TG~~~~--~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~-----~~~G 280 (642)
||+... ..+.|++|+|.|+ .+|+|...+||+.+++++...+||||+|+|.+.+|+|+|++|++. +..|
T Consensus 79 Tg~~~~~~~~~~i~~A~S~D~-----~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~~~~~~g 153 (280)
T cd08995 79 TGHNLDGKPKQVVMHATSDDL-----ITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDGPYNRRG 153 (280)
T ss_pred EEECCCCCCcEEEEEEECCCC-----CccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEeccCCCCCCCCe
Confidence 998642 4678999999885 799999888998755566667899999976545799999999874 4578
Q ss_pred EEEEEEeCCCCCCEEcccccccCCCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCC-CCceEEEEEEecCCC
Q 006523 281 ISLVYQTTDFKTYELLDEYLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD-TKVDHYAIGTYNPAN 359 (642)
Q Consensus 281 ~~~lY~S~Dl~~W~~~~~l~~~~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~-~~~~~Y~iG~fd~~~ 359 (642)
++.+|+|+||++|++.+.+... ....|||||++|+++ .+|||..|... .....|++|+.. .
T Consensus 154 ~i~~~~S~Dl~~W~~~~~~~~~-~~~~~~E~P~l~~~~---------------g~~~L~~s~~~~~~~~~Y~~~~~~--~ 215 (280)
T cd08995 154 CIALFTSKDLKNWEYEEPFYAP-GLYFMPECPDLFKMG---------------DWWYLVYSEFSENRKTHYRVSKSP--F 215 (280)
T ss_pred EEEEEEeCCcCcceecCceecC-CCcceeecceEEEEC---------------CEEEEEEEeccCCCcEEEEEeCCC--C
Confidence 9999999999999999876533 234599999999996 27888888653 234579999622 2
Q ss_pred CcccCCCCCcccccceeeccC-cccceeeEecCCCCcEEEEEeccCCCCCCCCcCCCCcccccccEEEEEeeCCC
Q 006523 360 DKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTESDDLEKGWASVQTIPRTVLYDNKTG 433 (642)
Q Consensus 360 ~~f~p~~~~~D~g~~~~lD~G-~fYA~qtf~d~~~gRrIl~GW~~~~d~~~~~~~~GWag~ltlPRel~L~~~~g 433 (642)
+.|..... ..+| | +|||+|||.|+ +||||||||++++.+.++.++||+|||| ||+|.+. ++|
T Consensus 216 g~~~~~~~-------~~~d-g~dfYA~~~~~~~--~r~i~~gw~~~~~~~~~~~~~~w~~~l~-~~~~~~~-~~g 278 (280)
T cd08995 216 GPWRAPDD-------DTFD-GRAFYAAKTASDG--TRRFLFGWVPTKAGNDDDGNWEWGGNLV-VHELIQN-EDG 278 (280)
T ss_pred CCeEcCCc-------CccC-cccccceeEEEeC--CeEEEEEEecCCCCcccccCCccceEEE-eeEEEEC-CCC
Confidence 35543221 1478 7 89999999996 9999999999999888888999999999 6777776 366
No 8
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=100.00 E-value=1.4e-37 Score=319.65 Aligned_cols=242 Identities=26% Similarity=0.322 Sum_probs=190.4
Q ss_pred CCccceEECCEEEEEEeeCCCCCCCCC-cEEEEEEecCccceEEcCccC--CCCCccCCCCeEeeeEEEccCCcEEEEEe
Q 006523 132 DPNGPLFYKGWYHLFYQYNPDSAVWGN-ITWGHAVSADLIHWLYLPIAM--VPDQWYDINGVWTGSATILPDGQIVMLYT 208 (642)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~-~~WGHA~S~DLvhW~~~p~AL--~Pd~~~D~~Gv~SGSavv~~dG~~~~~YT 208 (642)
||+++. |+||||||++|.+..|+. ..||||+|+||+||++.+.+| .+...+|..|||+|+++...+|+++|+||
T Consensus 8 ~~~~~~---g~yhlfy~~~~~~~~~~~~~~~~~a~S~D~~~w~~~~~~l~~~~~~~~~~~~~~~p~v~~~~dg~~~~~Yt 84 (276)
T cd08979 8 NPAVVV---GKYHLFYLAAPRGGGDGNTSRIGAASSDDGTWWTRPPAPLPPGPPGSFDDGGVWTPSVVRDPDGTYRMFYT 84 (276)
T ss_pred CCceEe---eeEEEEEEccCcCcCCCCcceeEEEEcCCCCccEECCcCccCCCCCchhcCCeEcceEEEcCCCeEEEEEe
Confidence 566554 889999999999876554 568999999999999999887 56778899999999998755599999999
Q ss_pred ccCC--CccceEEEEEEcCCCCCCceeEEEcCCCcee-----cCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec-CCee
Q 006523 209 GSTD--KSVQVQNLAYPADPSDPLLLDWVKYPGNPVL-----VPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-GKTG 280 (642)
Q Consensus 209 G~~~--~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl-----~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~-~~~G 280 (642)
|... ...+.|++|+|+|+ .+|+|.+.+|++ ..+......++|||+|++.+.+|+|+|++++.. +..+
T Consensus 85 ~~~~~~~~~~~i~~A~S~D~-----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~~~~ 159 (276)
T cd08979 85 GYDRPKGAVQRIGLATSKDL-----IHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDADERG 159 (276)
T ss_pred cccCCCCCcceEEEEECCCC-----CceEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEccCCCc
Confidence 9863 45688999999985 799998777764 222233456899999976533499999999864 3457
Q ss_pred EEEEEEeCCCCCCEEccccc--ccCCCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCC-CCceEEEEEEecC
Q 006523 281 ISLVYQTTDFKTYELLDEYL--HAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD-TKVDHYAIGTYNP 357 (642)
Q Consensus 281 ~~~lY~S~Dl~~W~~~~~l~--~~~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~-~~~~~Y~iG~fd~ 357 (642)
.+.+|+|+|+++|++.+.+. .......|||||++|+++ .+|+|..+... .....|.+|.++.
T Consensus 160 ~i~~a~S~D~~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~---------------g~~~l~~~~~~~~~~~~y~vg~~~~ 224 (276)
T cd08979 160 AIGLATSPDLIHWTPVPPPPGPRTGYDDGQLEVPQVVKID---------------GRWYLLYSGRNEDAKTGYRVGTALF 224 (276)
T ss_pred EEEEEECCCCCcceECCCCCCCCCcccCCcCccceEEEEC---------------CEEEEEEEecCccCCccEEEEeccc
Confidence 88999999999999988762 222234599999999995 27888887654 4456799998875
Q ss_pred CCCcccCCCCCcccccceeeccC-cccceeeEecCCCCcEEEEEeccCC
Q 006523 358 ANDKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINET 405 (642)
Q Consensus 358 ~~~~f~p~~~~~D~g~~~~lD~G-~fYA~qtf~d~~~gRrIl~GW~~~~ 405 (642)
. .|+|.. ...+|+| +|||+|++.+.+++||+++|||+++
T Consensus 225 ~--~~~~~~-------~~~~~~g~~~ya~~~~~~~~~~~~~~~gw~~~~ 264 (276)
T cd08979 225 G--PGRPLT-------LAELLDRTDLYAARPVPDGEGGGVVLEGFVQFG 264 (276)
T ss_pred C--Cccccc-------cccccCCCCceeEEeccccCCCcEEEEEEeecc
Confidence 4 455532 1357888 8999999998657999999999986
No 9
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=100.00 E-value=1.1e-34 Score=298.27 Aligned_cols=268 Identities=26% Similarity=0.391 Sum_probs=203.6
Q ss_pred cCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCC----CCCccCCCCeEeeeEEEccCCcEEEE
Q 006523 131 NDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMV----PDQWYDINGVWTGSATILPDGQIVML 206 (642)
Q Consensus 131 NDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~----Pd~~~D~~Gv~SGSavv~~dG~~~~~ 206 (642)
|||+ +++++|+||||||++|.+ ++++|+|++|+||+||++++.++. |..+++..++|+|+++...+|+++|+
T Consensus 1 ~DP~-i~~~~g~yyl~~~~~~~~---~~~~~~~~~S~Dl~~W~~~~~~~~~~~~~~~~~~~~~~wap~v~~~~~g~~~l~ 76 (286)
T cd08772 1 ADPN-LIKYNGTYYIFFSGDDKN---GNPGIAHATSKDLVNWTDHPVALVWWARRGGPKDSGGIWAPSIVYIENGKFYLY 76 (286)
T ss_pred CCCe-EEEECCEEEEEEEccCCC---CCceEEEEECCCcCcceECCccchhhcccCCCCCCCcEecceEEEcCCCCEEEE
Confidence 7999 999999999999999875 678999999999999999998874 67778889999999987555999999
Q ss_pred EeccCC-CccceEEEEEEcCCCCCCceeEEEcCCCceecC-CCCCCCCCCCCCEEEEeCCCCeEEEEEeeec-CCeeEEE
Q 006523 207 YTGSTD-KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVP-PRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-GKTGISL 283 (642)
Q Consensus 207 YTG~~~-~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~-p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~-~~~G~~~ 283 (642)
||+... ...+.|++|+|+|+. ..|++...+||+.. +......++|||+|++ +++|+|||++++.. +..+.+.
T Consensus 77 yt~~~~~~~~~~i~~a~s~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~-d~dG~~y~~~~~~~~~~~~~i~ 151 (286)
T cd08772 77 YTDVSFTKNQQTIGVATAEDGN----GPWTDYIGGPVLPDNPPAADVSNFRDPFVFE-DDDGKWYLVFGSGDHHNFGGIF 151 (286)
T ss_pred EEeecCCCCceeEEEEEcCCCC----CCCccccccccccCCCCccccccccCCeEEE-cCCCCEEEEEccccCCCCCeEE
Confidence 999853 246789999998863 45776655666643 2233456899999954 45699999998763 2356788
Q ss_pred EEEeCCCCCCEEcccc--cccCCCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCCC------CceEEEEEEe
Q 006523 284 VYQTTDFKTYELLDEY--LHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDT------KVDHYAIGTY 355 (642)
Q Consensus 284 lY~S~Dl~~W~~~~~l--~~~~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~~------~~~~Y~iG~f 355 (642)
+++|+|+.+|+..+.. .......+++|||++|+++ .+|+|..|.... ....|++++.
T Consensus 152 ~~~s~d~~~w~~~~~~~~~~~~~~~~~~E~P~~~~~~---------------g~~yL~~s~~~~~~~~~~y~~~~~~~~~ 216 (286)
T cd08772 152 LYESDDDTTWKKGSAELLISEGEGGKQIEGPGLLKKN---------------GKYYLFYSINGTGRVDSTYSIGYARSES 216 (286)
T ss_pred EEEcCCCCCcccccceeeEeeccCCCceeccEEEEEC---------------CEEEEEEEcCCCcCCCCCcceEEEEccC
Confidence 9999999999987764 2222334699999999985 268888776542 3446788765
Q ss_pred cCCCCcccCCCCCc-ccccceeeccC-cccceeeEecCCCCcEEEEEeccCCCCCCCCcCCCCcccccccEEE
Q 006523 356 NPANDKWTPDNPEE-DVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTESDDLEKGWASVQTIPRTV 426 (642)
Q Consensus 356 d~~~~~f~p~~~~~-D~g~~~~lD~G-~fYA~qtf~d~~~gRrIl~GW~~~~d~~~~~~~~GWag~ltlPRel 426 (642)
+ .+.|++..... -.-.....|.+ .+||++.|.++ ++|++|++|+.+++.... .+.+|+++|+|||++
T Consensus 217 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~ 285 (286)
T cd08772 217 D--TGPYVPKSDTSGGLSLTGGNDGGVGPYHAAAFNDA-GGRVVLVYHAYNVQYADA-PTYGWGRSLAIPRLL 285 (286)
T ss_pred C--CCCcccCCCCCCccccccccCCCCCCCccEEEECC-CCCEEEEEEeccCCcccc-ccCCCcccccccccc
Confidence 3 34676543210 00011235666 79999999987 799999999998875433 568999999999986
No 10
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=99.93 E-value=1e-24 Score=232.52 Aligned_cols=192 Identities=22% Similarity=0.223 Sum_probs=137.6
Q ss_pred cCCccceE-ECCEEEEEEeeCCCC----CCCCCcEEEEEEecCccceEEcCccCCCCCccCCCCeEeeeEEEccCCcEEE
Q 006523 131 NDPNGPLF-YKGWYHLFYQYNPDS----AVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVM 205 (642)
Q Consensus 131 NDPnG~~y-~~G~YHLFYQ~nP~~----~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~ 205 (642)
-|..|-+. ++|+.-+|+...|.. +.|+.+||||++|+||+||++.+. +.|+.++|.+|||||||++..||+++|
T Consensus 8 ~d~~g~~~~~~G~~~vfaL~a~~~~~~~~rh~~~~wgh~~S~dlv~W~~~~~-l~p~~~~d~~g~wSGsa~~~~dg~~~l 86 (349)
T cd08997 8 QDRDGEVASYNGYEVIFALTADRNLDPDDRHGDARIGYFYSRAGGNWIDGGK-VFPDGLSPGSREWSGSATLDDDGTVQL 86 (349)
T ss_pred ECCCCCEEEECCEEEEEEEecCCCCCCCCCcCceEEEEEEeCCCCcccCCCc-cCCCCcccCCCeEcceEEEeCCCeEEE
Confidence 35666444 688533898877764 468899999999999999999654 668899999999999998766799999
Q ss_pred EEeccCC----CccceEEEEEEcCCCCCCceeEEEcC--CCceecCC--------------CCCCCCCCCCCEEEEeCCC
Q 006523 206 LYTGSTD----KSVQVQNLAYPADPSDPLLLDWVKYP--GNPVLVPP--------------RHIGPKDFRDPTTAWAGPD 265 (642)
Q Consensus 206 ~YTG~~~----~~~q~q~lA~S~D~~d~ll~~w~K~~--~nPVl~~p--------------~g~~~~~fRDP~V~w~~~~ 265 (642)
||||+.+ .....|++|.+.+.. +..|.+.. ..+++.+. +.-...+||||+|+..+++
T Consensus 87 fYTg~~~~~~~~~~~~Q~ia~a~~~~---~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~~ 163 (349)
T cd08997 87 FYTAVGRKGEPQPTFTQRLALARGTL---SVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPET 163 (349)
T ss_pred EEeccccCCCCCCCceEEEEEEECCC---cceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEecCCC
Confidence 9999863 235778888765431 22333321 13444321 1123578999999543337
Q ss_pred CeEEEEEeeec-CC---------------------------eeEE--EEEEeCCCCCCEEcccccccCCCCCceeeeceE
Q 006523 266 GKWRLTIGSKI-GK---------------------------TGIS--LVYQTTDFKTYELLDEYLHAVPGTGMWECVDFY 315 (642)
Q Consensus 266 g~w~MviGa~~-~~---------------------------~G~~--~lY~S~Dl~~W~~~~~l~~~~~~~gmWECPdlf 315 (642)
|+|||+++++. .. .|+| ++++|+|+.+|++.++|+.+......||||++|
T Consensus 164 G~~ymvfeant~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~G~IGia~~~s~dl~~W~~~~PL~~a~~v~d~~E~P~v~ 243 (349)
T cd08997 164 GKTYLLFEGNTAGERGSQECTEAELGRVLPDTVKPDGASYQNGNVGIAVAKNDDLTEWKLLPPLLEANGVNDELERPHVV 243 (349)
T ss_pred CcEEEEEEeccCCCCCccccccccccccccccccccccccccceEEEEEecCCCCCCcEEcCccccCCCcCCceEcceEE
Confidence 99999999863 12 2554 445778999999999997653334579999999
Q ss_pred EecccCccceeeccCCCCeEEEEeee
Q 006523 316 PVAINGSVGLDTSATGPGIKHVLKAS 341 (642)
Q Consensus 316 ~l~~~g~~~l~~s~~g~~~k~vl~~s 341 (642)
+++ .||+|..|
T Consensus 244 ~~~---------------gk~yL~~s 254 (349)
T cd08997 244 FHN---------------GKYYLFTI 254 (349)
T ss_pred EEC---------------CEEEEEEe
Confidence 996 27888776
No 11
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=99.87 E-value=2.8e-21 Score=202.06 Aligned_cols=189 Identities=19% Similarity=0.262 Sum_probs=140.0
Q ss_pred eeeecCCCCccCCccceEE-CCEEEEEEeeCCCCCC---C-CCcEEEEEEecCcc-ceEEcCccCCCC--CccCCCCeEe
Q 006523 121 FHFQPEKNWMNDPNGPLFY-KGWYHLFYQYNPDSAV---W-GNITWGHAVSADLI-HWLYLPIAMVPD--QWYDINGVWT 192 (642)
Q Consensus 121 yHf~P~~gwmNDPnG~~y~-~G~YHLFYQ~nP~~~~---w-G~~~WGHA~S~DLv-hW~~~p~AL~Pd--~~~D~~Gv~S 192 (642)
.+|..+..++-+|. ++.. +|+||||||..|.+.. | ....||||+|+|+. +|+..+++|.|+ ..||..++++
T Consensus 4 ~~~~~~~~~~w~~~-vi~~~~g~y~lfy~~~~~~~~~~~~~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~~wd~~~~~~ 82 (291)
T cd08994 4 SGLEDEDYSVWGGS-IIKGPDGKYHLFASRWPEGLGFHGWLPYSEIVHAVSDTPEGPYTFQEVVLPGRGGGYWDARTTHN 82 (291)
T ss_pred ceeeeCCeEEEecc-eEECCCCcEEEEEEEccCCCCCCcccccceEEEEEcCCCCCCcEEeeeEcCCCCCCcccCCCccC
Confidence 36778888899998 6665 5899999999887643 2 23569999999987 899988999887 4789999999
Q ss_pred eeEEEccCCcEEEEEeccCC-------CccceEEEEEEcCCCCCCceeEEEcCCCceecCC-C-----------------
Q 006523 193 GSATILPDGQIVMLYTGSTD-------KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPP-R----------------- 247 (642)
Q Consensus 193 GSavv~~dG~~~~~YTG~~~-------~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p-~----------------- 247 (642)
++++. .+|+++|+||+... ...+.+++|.|.+. +..|++. .+|||.+. .
T Consensus 83 P~vi~-~~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~----~g~w~~~-~~pvl~~~~~~~~~~~~~~p~v~~~~~ 156 (291)
T cd08994 83 PTIKR-FDGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSL----DGPWKRS-DQPILEPRPGGWDNLITSNPAVTRRPD 156 (291)
T ss_pred CeEEE-ECCEEEEEEEcccCCcccccCCCCceEEEEEeCCC----CCCcEEC-CCceecCCCCccccccccCCCeEEeCC
Confidence 99975 68999999999753 12456777877653 1356664 34444220 0
Q ss_pred -------------------------------------------CCCCCCCCCCEEEEeCCCCeEEEEEeeec----CCee
Q 006523 248 -------------------------------------------HIGPKDFRDPTTAWAGPDGKWRLTIGSKI----GKTG 280 (642)
Q Consensus 248 -------------------------------------------g~~~~~fRDP~V~w~~~~g~w~MviGa~~----~~~G 280 (642)
.....++|||+| |+ .+|+|+|+++++. +..+
T Consensus 157 g~~~m~y~g~~~~~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V-~~-~~g~yym~~~~~~~~~~~~~~ 234 (291)
T cd08994 157 GSYLLVYKGGTYNPTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTEDPFV-WY-DKGQFHMIVKDMLGYVTGEKG 234 (291)
T ss_pred CCEEEEEeccccCCCCCcEEEEEEEeCCCCCCCEECCCCccccCCCCCceeCceE-EE-eCCEEEEEEeecccCcCCCCc
Confidence 011245799999 66 5699999999874 2467
Q ss_pred EEEEEEeCCCCCCEEcccccc----c-CC----CCCceeeeceE-Eec
Q 006523 281 ISLVYQTTDFKTYELLDEYLH----A-VP----GTGMWECVDFY-PVA 318 (642)
Q Consensus 281 ~~~lY~S~Dl~~W~~~~~l~~----~-~~----~~gmWECPdlf-~l~ 318 (642)
.+.+|+|+|+++|++.+.+.. . .+ ...|||||++| ..+
T Consensus 235 ~i~~a~S~Dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~erP~v~~~~~ 282 (291)
T cd08994 235 GGAYFRSKDGIHWKLAPGLAYSTTVEWTDGTTEDWGRLERPQVLLDED 282 (291)
T ss_pred eEEEEECCCCCCceecCcceeeeeEEcCCCcccccccccCCEEEEcCC
Confidence 899999999999999987731 1 11 23599999999 664
No 12
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.82 E-value=8.7e-19 Score=184.22 Aligned_cols=185 Identities=21% Similarity=0.259 Sum_probs=135.7
Q ss_pred CcCccc-ccccccceeeeecCCCC----ccCCccceEECCEEEEEEeeCCCCC--CCCCcEEEEEEecCccceEEcCccC
Q 006523 107 YNWTNA-MFTWQRTSFHFQPEKNW----MNDPNGPLFYKGWYHLFYQYNPDSA--VWGNITWGHAVSADLIHWLYLPIAM 179 (642)
Q Consensus 107 ~~~~~~-~~~w~Rp~yHf~P~~gw----mNDPnG~~y~~G~YHLFYQ~nP~~~--~wG~~~WGHA~S~DLvhW~~~p~AL 179 (642)
+..|.. +..|+|...-+.+...| +.+|. +++++|+||||||++|..+ .++.++|+||+|+||++|++.+++.
T Consensus 51 ~a~S~D~l~~W~~~g~~~~~~~~~~~~~~WAP~-v~~~~G~y~myys~~~~~~~~~~~~~~i~~a~S~Dl~~w~~~~~~~ 129 (294)
T cd08984 51 VASSKDGGATWTYRGTADGLEFECGRNTFWAPE-VVWHGGVYHMYVTYIPGVPPDWGGPRRIVHYTSPNLWDWTFVGRVD 129 (294)
T ss_pred EEEeCCCCCCCEEeeeeccCCCCCcccceeCce-EEEECCEEEEEEEecCCCCcccCCCcEEEEEECCCcCcceECCccc
Confidence 334555 77787766433332222 34676 7889999999999998753 3457899999999999999988653
Q ss_pred CCCCccCCCCeEeeeEEEccCCcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEE
Q 006523 180 VPDQWYDINGVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTT 259 (642)
Q Consensus 180 ~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V 259 (642)
. +..++++++++.+.+|+++|+||+... .+.+++|.|.|+ .+|++. .+++.. ...++|+|
T Consensus 130 ~-----~~~~~iD~~vf~~~dg~~yl~y~~~~~--~~~~~~a~s~D~-----~~w~~~--~~~i~~------~~~EgP~v 189 (294)
T cd08984 130 L-----DSDRVIDACVFKLPDGRWRMWYKDERR--GSTTYAADSEDL-----YHWTVE--GPVLGD------RPHEGPNV 189 (294)
T ss_pred c-----CCCCcEEeEEEEeCCCEEEEEEECCCC--CeEEEEEECCCC-----CEEEeC--CccccC------CCCCCCCe
Confidence 2 245899999987667999999998643 345689999885 799985 455542 13479999
Q ss_pred EEeCCCCeEEEEEeeecCCeeEEEEEEeCCCCCCEEcccccccCC---C-CCceeeeceEEec
Q 006523 260 AWAGPDGKWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLHAVP---G-TGMWECVDFYPVA 318 (642)
Q Consensus 260 ~w~~~~g~w~MviGa~~~~~G~~~lY~S~Dl~~W~~~~~l~~~~~---~-~gmWECPdlf~l~ 318 (642)
|+ .+|+|||+++. ..| +.+|+|+|+.+|++.+.++.... . ..+++||++++.+
T Consensus 190 -~k-~~g~yym~~~~---~~g-~~~~~S~D~~~W~~~~~~l~~~~~~~~~~~~~~H~~i~~~~ 246 (294)
T cd08984 190 -FR-WKGYYWMIIDE---WKG-LGVYRSKDAENWERQGGILLKPGTRPDDGAKGRHADVVVTG 246 (294)
T ss_pred -eE-ECCEEEEEEcC---Cce-EEEEECCChhhcEECCeeeccCCCCccccccccCCcEEEeC
Confidence 44 57999999854 234 66999999999999997765321 1 2378999999764
No 13
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.79 E-value=4.6e-18 Score=176.21 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=122.3
Q ss_pred CCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcC-ccCCC--CCccCCCCeEeeeEEEccCCcEEEEEe
Q 006523 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLP-IAMVP--DQWYDINGVWTGSATILPDGQIVMLYT 208 (642)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p-~AL~P--d~~~D~~Gv~SGSavv~~dG~~~~~YT 208 (642)
|| |+++++|+||||||.++.. +.++||||+|+|++||+..+ +.|.| +..++..||++++++. .+|+++|+||
T Consensus 2 nP-~v~~~~G~y~l~y~~~~~~---~~~~ig~A~S~Dg~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~-~~g~y~m~Yt 76 (268)
T cd08993 2 NP-AVVYDNGEFYLLYRAAGND---GVIRLGLARSRDGLHFEIDPDPPVWPPPEDGFEEGGVEDPRIVK-IDDTYYITYA 76 (268)
T ss_pred cC-eEEEECCEEEEEEEEECCC---CceEEEEEEECCCceEEECCcceEcCCCCCcccccCccCcEEEE-ECCEEEEEEE
Confidence 56 5889999999999987643 56899999999999999876 44556 6678889999999974 7999999999
Q ss_pred ccCC-CccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec---CCeeEEEE
Q 006523 209 GSTD-KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI---GKTGISLV 284 (642)
Q Consensus 209 G~~~-~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~---~~~G~~~l 284 (642)
+... ...+.+++|.|+|+ .+|+|.. . ++. + ..||++++....+|+|+|++.... +..+.+.+
T Consensus 77 a~~~~~~~~~i~lA~S~D~-----~~W~~~~-~-~~~-~------~~~d~~~~p~~~~g~y~m~~r~~~~~~~~~~~I~l 142 (268)
T cd08993 77 ARPNAPNGTRIGLATTKDF-----ITFERLG-T-SLV-P------NNRDGILFPEKINGKYVMLHRPFEYGGTSPPDMWL 142 (268)
T ss_pred ccCCCCCCcEEEEEEeCCc-----ceEEEec-c-cCC-C------CCCCEEEeeEEECCEEEEEEccccCCCCCCCcEEE
Confidence 9863 34577999999985 8999973 2 121 1 237888832225899999996432 34567899
Q ss_pred EEeCCCCCCEEcccccccCCCCCceeeec
Q 006523 285 YQTTDFKTYELLDEYLHAVPGTGMWECVD 313 (642)
Q Consensus 285 Y~S~Dl~~W~~~~~l~~~~~~~gmWECPd 313 (642)
++|+||.+|+..+.++.. ..+.||+-.
T Consensus 143 A~S~Dl~~W~~~~~~~~~--~~~~wd~~~ 169 (268)
T cd08993 143 SFSPDLVHWGNHRFVLSP--RPNHWEQLK 169 (268)
T ss_pred EECCCcCccCCCeEEecC--CCCceeece
Confidence 999999999987766543 223577644
No 14
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.79 E-value=5.7e-18 Score=175.90 Aligned_cols=192 Identities=15% Similarity=0.170 Sum_probs=138.0
Q ss_pred CCCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCC-CccCCCCeEeeeEEEccCCcEEE
Q 006523 127 KNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPD-QWYDINGVWTGSATILPDGQIVM 205 (642)
Q Consensus 127 ~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd-~~~D~~Gv~SGSavv~~dG~~~~ 205 (642)
.||++||+ +++++|+||||++....+. ....|.+++|+||+||++++.+|.+. ..++..++|.++++. .+|+++|
T Consensus 5 ~g~~~DP~-i~~~~g~yY~~~t~~~~~~--~~~~~~~~~S~Dl~~W~~~g~~l~~~~~~~~~~~~wAP~v~~-~~g~yy~ 80 (275)
T cd09004 5 PGWYADPE-IRIFGGTYYIYPTSDGAGG--EQTPFDVFSSKDLVNWTKEGIILDMADVSWANRAAWAPSVIE-RNGKYYF 80 (275)
T ss_pred CCCCCCCC-eEEECCEEEEEEeccCCCC--CeeEEEEEECCCCCCceECcccccccCCcccCCCcCCCeEEE-ECCEEEE
Confidence 46899999 5788999999998765322 24679999999999999999988664 456778999999975 6899999
Q ss_pred EEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCCeeEEEEE
Q 006523 206 LYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVY 285 (642)
Q Consensus 206 ~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~~G~~~lY 285 (642)
+||+. +.+++|+|+|+. ..|++..++|++.+.. .....+||.|+ .+++|+|||++++. .++.++-
T Consensus 81 yys~~-----~~i~va~s~~p~----gp~~~~~~~p~~~~~~--~~~~~iDp~vf-~d~dG~~yl~~~~~---~~~~i~~ 145 (275)
T cd09004 81 YFSAN-----GGIGVAVADSPL----GPFKDALGKPLIDKFT--FGAQPIDPDVF-IDDDGQAYLYWGGW---GHCNVAK 145 (275)
T ss_pred EEEcC-----CcEEEEEeCCCC----CCCCCCCCCccccCCc--CCCCccCCCeE-ECCCCCEEEEEcCc---CCEEEEE
Confidence 99986 457899998753 4688755678876432 23578999995 45789999999863 1222234
Q ss_pred EeCCCCCCEEcccccccCCCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCCCCceEEEEE
Q 006523 286 QTTDFKTYELLDEYLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVDHYAIG 353 (642)
Q Consensus 286 ~S~Dl~~W~~~~~l~~~~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~~~~~~Y~iG 353 (642)
-|+|+.+|+.....+ ......+.|||.+|+.+ .+++|..|........|.+|
T Consensus 146 l~~d~~~~~~~~~~~-~~~~~~~~EgP~i~k~~---------------G~yyl~ys~~~~~~~~Y~~~ 197 (275)
T cd09004 146 LNEDMISFDGERDGS-EITPKNYFEGPFMFKRN---------------GIYYLMWSEGGWTDPDYHVA 197 (275)
T ss_pred ECCCcccccCcceee-eccCCCceecceEEEEC---------------CEEEEEEECCCCCCCCceEE
Confidence 578898887543332 11223489999999975 26777777654332234444
No 15
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.70 E-value=1.4e-15 Score=158.35 Aligned_cols=186 Identities=19% Similarity=0.155 Sum_probs=129.7
Q ss_pred CCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCc-cCCCCeEeeeEEEccCCcEEEE
Q 006523 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQW-YDINGVWTGSATILPDGQIVML 206 (642)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~-~D~~Gv~SGSavv~~dG~~~~~ 206 (642)
+.+-||. +++++|+|+||+..... ..|++++|+||+||+..+.+|.+... .+..++|.++++. .+|+++|+
T Consensus 6 ~~~~DP~-i~~~~g~yy~~~t~~~~------~~i~~~~S~Dl~~W~~~g~~l~~~~~~~~~~~~waP~v~~-~~g~y~~~ 77 (287)
T cd08999 6 GDFPDPS-VIRVDGTYYAYATNGNG------PNVPIATSTDLVNWTYLGDAFPKLPRWWTGGDFWAPDVSY-VNGKYVLY 77 (287)
T ss_pred CCCCCCe-EEEECCEEEEEEeCCCC------CcEEEEECCCCCCcEECCcccCCCCCcccCCCccCceEEE-ECCEEEEE
Confidence 3567998 77889999999986432 57999999999999999988876554 4566789888864 68999999
Q ss_pred EeccCCC-ccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCCee---EE
Q 006523 207 YTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTG---IS 282 (642)
Q Consensus 207 YTG~~~~-~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~~G---~~ 282 (642)
|++.... ..+.+++|+|+|.. ..|++....++. .+. .....+||.|++ +++|+|||++++.....| .+
T Consensus 78 y~~~~~~~~~~~i~~a~s~~p~----g~~~~~~~~~~~-~~~--~~~~~~Dp~v~~-d~dG~~Yl~~~~~~~~~~~~~~i 149 (287)
T cd08999 78 YSARDKGSGGQCIGVATADSPL----GPFTDHGKPPLC-CPE--GEGGAIDPSFFT-DTDGKRYLVWKSDGNSIGKPTPI 149 (287)
T ss_pred EEeecCCCCCEEEEEEECCCCC----CCCccCCcceEe-cCC--CCCCccCCCeEE-CCCCCEEEEEeccCCCCCCCceE
Confidence 9998642 34567788887652 478886433443 222 235679999954 468999999987532111 13
Q ss_pred EEE-EeCCCCCCEEccc-ccccCC--CCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCC
Q 006523 283 LVY-QTTDFKTYELLDE-YLHAVP--GTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD 344 (642)
Q Consensus 283 ~lY-~S~Dl~~W~~~~~-l~~~~~--~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~ 344 (642)
.+. -|+|+.+|..... ++.... ...++|||.+|+.+ .+++|..|...
T Consensus 150 ~~~~ls~d~~~~~~~~~~i~~~~~~~~~~~~EgP~i~k~~---------------g~yyl~~S~~~ 200 (287)
T cd08999 150 YLQELSADGLTLTGEPVRLLRNDEDWEGPLVEAPYLVKRG---------------GYYYLFYSAGG 200 (287)
T ss_pred EEEEeCCCCccccCCcEeeecccccccCCceEeeEEEEEC---------------CEEEEEEEcCC
Confidence 233 3689988864332 222111 23489999999984 26888887654
No 16
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=99.63 E-value=1.7e-14 Score=149.99 Aligned_cols=195 Identities=14% Similarity=0.155 Sum_probs=137.1
Q ss_pred CCccceEECCEEEEEEeeCCCCCC---CCCcEEEEEEecCccceEEcCccCCCCC--ccCCCCeEeeeEEEccCCcEEEE
Q 006523 132 DPNGPLFYKGWYHLFYQYNPDSAV---WGNITWGHAVSADLIHWLYLPIAMVPDQ--WYDINGVWTGSATILPDGQIVML 206 (642)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~---wG~~~WGHA~S~DLvhW~~~p~AL~Pd~--~~D~~Gv~SGSavv~~dG~~~~~ 206 (642)
||. +++++|+|++|.......+. +....|..+.|+||+||+..+.+|.+.. .++..++|.++++. .+|+++|+
T Consensus 2 DP~-~~~~~~~yy~~~t~~~~~~~~~~~~~~~~~v~~S~Dl~~W~~~g~~l~~~~~~~~~~~~~wAP~i~~-~~g~yy~y 79 (274)
T cd08990 2 DPA-AHVFNGRVYIYTSHDEAGGGGDDFCMNDYHVFSSPDLVNWTDHGVILSVTDFPAWAKGQAWAPDVVE-KNGKYYLY 79 (274)
T ss_pred CCC-cEEECCEEEEEeCCCCCCCCCCccccceEEEEECCCCCCcEECcccccCCCCCccccCCcCcCeEEE-ECCEEEEE
Confidence 887 77789999999987654432 2234589999999999999998886543 36788999999874 79999999
Q ss_pred EeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCCeeEEEEEE
Q 006523 207 YTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQ 286 (642)
Q Consensus 207 YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~~G~~~lY~ 286 (642)
||+......+.+++|+|+|.. ..|++....|++...+ ......||.+++ +++|++||++++. .++.+.--
T Consensus 80 y~~~~~~~~~~igva~s~~p~----Gpw~~~~~~~~~~~~~--~~~~~iDp~vf~-d~dG~~yl~~~~~---~~~~~~~l 149 (274)
T cd08990 80 FPARDKDGGFAIGVAVSDSPA----GPFKDAGGPILITTPS--GGWYSIDPAVFI-DDDGQAYLYWGGG---LGLRVAKL 149 (274)
T ss_pred EEeecCCCceEEEEEEeCCCC----CCCCCCCCccccccCC--CCCCccCCcEEE-CCCCCEEEEECCc---CCEEEEEe
Confidence 999754335667899997752 4698875556654221 235678999954 5689999999864 23444556
Q ss_pred eCCCCCCEEccccccc-----CCCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCCCCceEEEEE
Q 006523 287 TTDFKTYELLDEYLHA-----VPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVDHYAIG 353 (642)
Q Consensus 287 S~Dl~~W~~~~~l~~~-----~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~~~~~~Y~iG 353 (642)
|+|+.+|+.....+.. ....+..|+|.+|+.+ .+++|..|.+......|++.
T Consensus 150 ~~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k~~---------------G~YYl~yS~~~~~~~~~a~s 206 (274)
T cd08990 150 KPDMLSLKGEPVEIVITDGAGDELRRFFEAPWVHKRN---------------GTYYLSYSTGDPEEIAYATS 206 (274)
T ss_pred CccccccCCCcEEEEeccccCCCCCCcccceeEEEEC---------------CEEEEEEECCCCcEEEEEEc
Confidence 8899999754433321 1123468999999875 26778777654333345543
No 17
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=99.57 E-value=1.9e-13 Score=139.95 Aligned_cols=191 Identities=23% Similarity=0.191 Sum_probs=127.8
Q ss_pred CCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCC----CCCccCCCCeEeeeEEEccCCcEEEEE
Q 006523 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMV----PDQWYDINGVWTGSATILPDGQIVMLY 207 (642)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~----Pd~~~D~~Gv~SGSavv~~dG~~~~~Y 207 (642)
||. ++.++|+|+||+..... ....++.++|+||++|+..+.++. +....+..++|.++++. .+|+++|+|
T Consensus 2 DP~-v~~~~~~yyl~~t~~~~----~~~~i~i~~S~Dl~~W~~~~~~~~~~~~~~~~~~~~~~waP~v~~-~~g~yyl~y 75 (271)
T cd08978 2 DPY-ILRYNGKYYLYGSTDDA----AGPGVQVWSSKDLVNWRYEGAVFVAWRGRGEAKDSGGLWAPEVIY-YEGKYYLYY 75 (271)
T ss_pred CCc-EEEECCEEEEEEecCCc----CCCcEEEEECCccCCcEECCcccccccccCCcccCCceeCCeEEE-ECCEEEEEE
Confidence 887 78889999999987642 234588999999999999998774 44456678999999975 689999999
Q ss_pred eccCC-CccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecC--CeeEEEE
Q 006523 208 TGSTD-KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIG--KTGISLV 284 (642)
Q Consensus 208 TG~~~-~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~--~~G~~~l 284 (642)
++... ...+.+++|+|+|+ ..|.+....+ .+. ......+||.|++ +++|++||+.+.... ..+.+.+
T Consensus 76 ~~~~~~~~~~~i~~a~s~d~-----~g~~~~~~~~---~~~-~~~~~~iDp~vf~-d~dg~~yl~~~~~~~~~~~~~i~~ 145 (271)
T cd08978 76 SVSDFDYNGSGIGVATSEDP-----TGPFEDKVIR---PPT-SNNGNSIDPTVFK-DDDGKYYLYYGSGDPGAGFGGIYI 145 (271)
T ss_pred EcccCCCCcccEEEEECCCC-----CCCccccccC---cCc-cCCCCccCcceEE-cCCCCEEEEEecccCCCCCCcEEE
Confidence 99753 23467889999875 4554432111 111 1234679999954 566999999987532 2455777
Q ss_pred EEeCCCCCCEEcccc-c-ccCCCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCCCCceEEEEE
Q 006523 285 YQTTDFKTYELLDEY-L-HAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVDHYAIG 353 (642)
Q Consensus 285 Y~S~Dl~~W~~~~~l-~-~~~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~~~~~~Y~iG 353 (642)
.++++...|...... . .......+.|||.+|+.. .+++|..|........|.++
T Consensus 146 ~~l~~~~~~~~~~~~~~~~~~~~~~~~EgP~~~k~~---------------g~yyl~ys~~~~~~~~y~~~ 201 (271)
T cd08978 146 SELTDDLTKPTGPPVLSASSGNNNAVTEGPTIFKKN---------------GYYYLTYSANGTGDYGYNIG 201 (271)
T ss_pred EEECcccccccCCceeeeeeccCCCceEccEEEEEC---------------CEEEEEEEeCCCCCCCceEE
Confidence 887765444321111 1 111233489999999975 26777777654322234444
No 18
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.52 E-value=8.7e-13 Score=138.19 Aligned_cols=180 Identities=17% Similarity=0.106 Sum_probs=123.8
Q ss_pred CCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCC-ccCCCCeEeeeEEEccCCcEEEEEecc
Q 006523 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQ-WYDINGVWTGSATILPDGQIVMLYTGS 210 (642)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~-~~D~~Gv~SGSavv~~dG~~~~~YTG~ 210 (642)
||. +++++|+|+||+..... ...+..++|+||+||+.++.++.+.. .+...++|.++++. .+|+++|+||+.
T Consensus 2 DP~-v~~~~g~yyl~~t~~~~-----~~~i~~~~S~Dl~~W~~~~~~~~~~~~~~~~~~~waP~v~~-~~g~yyl~ys~~ 74 (294)
T cd08991 2 DPF-VLRYNGKYYAYGTGGAD-----GRGFAVYSSPDLVDWKLHGGALLALDDDWGRRGFWAPEVYY-YNGKFYMYYSAN 74 (294)
T ss_pred CCe-EEEECCEEEEEEeCCCC-----CCeeEEEECCCCCCceECCccccCCCCCccCCcEEccEEEE-ECCEEEEEEEec
Confidence 888 88889999999876542 13478999999999999998876654 36778999999874 689999999998
Q ss_pred CCC-ccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCC---eeEEEEEE
Q 006523 211 TDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGK---TGISLVYQ 286 (642)
Q Consensus 211 ~~~-~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~---~G~~~lY~ 286 (642)
... ..+.+++|+|+|+. ..|++....++ .. ....+||.+++ +++|+|||+.+..... .++.+.--
T Consensus 75 ~~~~~~~~i~~a~s~~p~----gp~~~~~~~~~-~~-----~~~~iD~~vf~-d~dG~~yl~~~~~~~~~~~~~i~~~~l 143 (294)
T cd08991 75 DRDEKTEHIGVAVSDSPL----GPFRDIKKPPI-DF-----EPKSIDAHPFI-DDDGKPYLYYSRNNYGNRVSDIYGTEL 143 (294)
T ss_pred cCCCCcceEEEEEeCCCC----CCCCcCCCCcc-cC-----CCcccCCceEE-CCCCCEEEEEEecCCCCcccceEEEEE
Confidence 543 45778899998752 46777532333 21 13567999954 4679999999864221 24444456
Q ss_pred eCCCCCCEEccc--c--ccc--------------CCCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCC
Q 006523 287 TTDFKTYELLDE--Y--LHA--------------VPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD 344 (642)
Q Consensus 287 S~Dl~~W~~~~~--l--~~~--------------~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~ 344 (642)
+.|+.+|.-... . ... .....+-|+|.+++.+ .+++|..|...
T Consensus 144 ~~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~---------------g~yyl~ys~~~ 204 (294)
T cd08991 144 VDDKLSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHN---------------GRYYLTYSANH 204 (294)
T ss_pred ccceeeeccceeeccccccccccccccccccccccccCceeeCcEEEEEC---------------CEEEEEEECCC
Confidence 788877752111 0 000 0112378999999885 26777777544
No 19
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=99.48 E-value=3.4e-15 Score=134.24 Aligned_cols=97 Identities=41% Similarity=0.621 Sum_probs=3.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHH-HhcCCCCCCCCCC--CCCCCCCCCCCCCCCCCCccc
Q 006523 14 YPPLLPEEQPSDAGTPASHRKPFKGFAAILASAIFLLSLVALI-INQTQKPLPSQNN--IVPTSKPTSFSNPEPRGVAEG 90 (642)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 90 (642)
|+|||+...+... ++.++||++|.+++|+++++||++||+++ +++++. +.... .......++...+.|||+++|
T Consensus 7 Y~PLP~~~~~~~~-~~~~~rR~~k~~~~i~~s~~~ll~lval~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~SRGv~~G 83 (106)
T PF11837_consen 7 YTPLPDSSESAPG-PGGRRRRPLKCLAAIFSSLLFLLSLVALIVINNGQS--PDGSSVSSSSPPPSPETATPVSRGVSEG 83 (106)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCCcccCC-CCcCcCCcchhHHHHHHHHHHHHHHHHHHHhhccCC--CCccccccCCCCCCCccccCCCCCcccC
Confidence 9999965543331 24567888899999999999999999998 333221 11111 122344455556689999999
Q ss_pred ccccccccccccccCCCcCccccc
Q 006523 91 VSAKSNSHLLRNIKGSYNWTNAMF 114 (642)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ 114 (642)
||||++....+. ..+|||+|+||
T Consensus 84 VSEKS~~~~~~~-~~~FpWtNaML 106 (106)
T PF11837_consen 84 VSEKSNGAGSGA-GNSFPWTNAML 106 (106)
T ss_dssp --------------------HHHH
T ss_pred cccccccCccCC-CCCCCCccccC
Confidence 999998874444 67899999997
No 20
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.47 E-value=1.3e-12 Score=139.95 Aligned_cols=171 Identities=21% Similarity=0.261 Sum_probs=120.4
Q ss_pred cceeeeecCCCC-ccCCccceEECCEEEEEEeeCCC-----------CC--CCCCcEEEEEEecCccceEEcCccCCCC-
Q 006523 118 RTSFHFQPEKNW-MNDPNGPLFYKGWYHLFYQYNPD-----------SA--VWGNITWGHAVSADLIHWLYLPIAMVPD- 182 (642)
Q Consensus 118 Rp~yHf~P~~gw-mNDPnG~~y~~G~YHLFYQ~nP~-----------~~--~wG~~~WGHA~S~DLvhW~~~p~AL~Pd- 182 (642)
.|..=+.+..+. ..||..+++.+|+|||||++... .+ .|.....+||+|+||+||+..+.+|.+.
T Consensus 24 ~p~~~~~~e~~i~r~dP~~Vi~~~g~Y~mwYs~~~~~~~~~~~~~~~~~~~~w~~y~I~~A~S~Dgv~W~~~g~~L~~~~ 103 (349)
T cd08992 24 YPKGGLGYEEGVHRRDPSSVIKVDGLYHVWYTKSEGETDGFGTGDPEAKVFPWDKCEIWHATSKDGWTWKEEGPAIGRGE 103 (349)
T ss_pred CcccccccccCeecCCCceEEEECCEEEEEEEecCCcccccccCCccccccCCCceEEEEEECCCCCCceECCccccCCC
Confidence 344444444444 36998899999999999997532 11 2445778999999999999999888653
Q ss_pred -CccCCCCeEeeeEEEccCCcEEEEEeccCCC----ccceEEEEEEcCCCCCCceeEEEcCCCceecCCC----------
Q 006523 183 -QWYDINGVWTGSATILPDGQIVMLYTGSTDK----SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPR---------- 247 (642)
Q Consensus 183 -~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~----~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~---------- 247 (642)
..||..++|..+++ ..+|+++|+|++.... ..+.+++|+|+++. ..|++. .+||+.+..
T Consensus 104 ~g~Wd~~~vwaP~Vi-~~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~----GpWtr~-d~Pil~p~~dg~w~~d~~~ 177 (349)
T cd08992 104 KGAYDDRSVFTPEVL-EHEGTYYLVYQVVKSPYLNRSFESIAMAVADSPY----GPWTKS-DEPILSPSNDGIWKGDEDN 177 (349)
T ss_pred CCCccccceECcEEE-EECCEEEEEEEecccccCCCCcceEEEEEECCcc----cccccC-CCcEecCCcCCceeeccCc
Confidence 35899999999986 5799999999975321 23567999998752 359985 689986521
Q ss_pred --------CCCCCCCCCCEEEEeCCCCeEEEEEeeecC--------CeeEEEEEEeCCCC-CCEEc
Q 006523 248 --------HIGPKDFRDPTTAWAGPDGKWRLTIGSKIG--------KTGISLVYQTTDFK-TYELL 296 (642)
Q Consensus 248 --------g~~~~~fRDP~V~w~~~~g~w~MviGa~~~--------~~G~~~lY~S~Dl~-~W~~~ 296 (642)
.++...+.||.|+ + .+|+|||++.+... ..-++-|..|+++. -|+..
T Consensus 178 ~~~~~~~g~wD~~~v~~P~v~-~-~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~GPf~r~ 241 (349)
T cd08992 178 RFLVKKKGSFDSHKVHDPCLF-P-FNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPEGPYVKS 241 (349)
T ss_pred eeEeccCCCcccCceECCEEE-E-ECCEEEEEEEccccCcccccCCCCceEEEEEECCCCCCCEeC
Confidence 1334457899985 3 58999999965321 11246677788764 46543
No 21
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.45 E-value=5.8e-12 Score=131.92 Aligned_cols=129 Identities=22% Similarity=0.249 Sum_probs=98.7
Q ss_pred ccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCC-------ccCCCCeEeeeEEEccCCc
Q 006523 130 MNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQ-------WYDINGVWTGSATILPDGQ 202 (642)
Q Consensus 130 mNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~-------~~D~~Gv~SGSavv~~dG~ 202 (642)
+.||. +++++|+|+||+... .+++++|+||+||++.+.++.+.. ..+..++|.++++. .+|+
T Consensus 1 ~~DP~-v~~~~~~yyl~~t~~---------~i~i~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~wAP~v~~-~~g~ 69 (288)
T cd08998 1 VHDPS-IIKEGDTYYLFSTGN---------GIAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPGGSGNLWAPDVIY-LNGK 69 (288)
T ss_pred CCCCe-EEEECCEEEEEEcCC---------CeEEEECCCCCCcEECCccccCCCccccccccCCCCCccCCeEEE-ECCE
Confidence 36997 889999999999864 589999999999999998776542 23567899999874 6999
Q ss_pred EEEEEeccCCC-ccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeee
Q 006523 203 IVMLYTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSK 275 (642)
Q Consensus 203 ~~~~YTG~~~~-~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~ 275 (642)
++|+||+.... ..+.+++|+|+|.. ...|++. +||+...++......+||.++. +++|++||++++.
T Consensus 70 yyl~ys~~~~~~~~~~i~va~s~~~~---~gpw~~~--~~v~~~~~~~~~~~~iDp~vf~-d~dG~~Yl~~~~~ 137 (288)
T cd08998 70 YYLYYSVSTFGSNRSAIGLATSDTLP---DGPWTDH--GIVIESGPGRDDPNAIDPNVFY-DEDGKLWLSFGSF 137 (288)
T ss_pred EEEEEEEEeCCCCceEEEEEEeCCCC---CCCCEEc--ceeeecCCCCCCcccccCCEEE-cCCCCEEEEeeec
Confidence 99999987543 34567889998750 1479875 5888754332335678999954 4689999999864
No 22
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.41 E-value=1e-11 Score=130.81 Aligned_cols=169 Identities=17% Similarity=0.216 Sum_probs=118.4
Q ss_pred ccCCccceEE--CCEEEEEEee-CC---CC-CCCC-CcEEEEEEecC-ccceEEcCccCCCCCccCCCCeEeeeEEEccC
Q 006523 130 MNDPNGPLFY--KGWYHLFYQY-NP---DS-AVWG-NITWGHAVSAD-LIHWLYLPIAMVPDQWYDINGVWTGSATILPD 200 (642)
Q Consensus 130 mNDPnG~~y~--~G~YHLFYQ~-nP---~~-~~wG-~~~WGHA~S~D-LvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~d 200 (642)
.-||. ++++ +|+|||||.- .. .. ..|. ...+|+|+|+| |+||+.++.++.++..+....+|.+.++. .+
T Consensus 11 ~~DP~-i~~~~~~~~~~~~yT~~~~~~~~~~~~w~~~~~i~~a~S~D~l~~W~~~g~~~~~~~~~~~~~~WAP~v~~-~~ 88 (294)
T cd08984 11 AADPT-IIYNRETKEWWMFYTNRRANVPTPGVAWVHGTDIGVASSKDGGATWTYRGTADGLEFECGRNTFWAPEVVW-HG 88 (294)
T ss_pred CCCCE-EEEeCCCCEEEEEEccccCcCCCCCcccCcCceEEEEEeCCCCCCCEEeeeeccCCCCCcccceeCceEEE-EC
Confidence 67998 8887 7899999942 11 11 1233 25799999999 99999988766664455667799999974 69
Q ss_pred CcEEEEEeccCC-----CccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeee
Q 006523 201 GQIVMLYTGSTD-----KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSK 275 (642)
Q Consensus 201 G~~~~~YTG~~~-----~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~ 275 (642)
|+++|||+.... ......++|+|+|. .+|++.+ ++..+ .....||.|+ ...+|+|+|++...
T Consensus 89 G~y~myys~~~~~~~~~~~~~~i~~a~S~Dl-----~~w~~~~--~~~~~-----~~~~iD~~vf-~~~dg~~yl~y~~~ 155 (294)
T cd08984 89 GVYHMYVTYIPGVPPDWGGPRRIVHYTSPNL-----WDWTFVG--RVDLD-----SDRVIDACVF-KLPDGRWRMWYKDE 155 (294)
T ss_pred CEEEEEEEecCCCCcccCCCcEEEEEECCCc-----CcceECC--ccccC-----CCCcEEeEEE-EeCCCEEEEEEECC
Confidence 999999997532 12346788999873 7899863 33211 1345799995 44679999999643
Q ss_pred cCCeeEEEEEEeCCCCCCEEcccccccCCCCCceeeeceEEec
Q 006523 276 IGKTGISLVYQTTDFKTYELLDEYLHAVPGTGMWECVDFYPVA 318 (642)
Q Consensus 276 ~~~~G~~~lY~S~Dl~~W~~~~~l~~~~~~~gmWECPdlf~l~ 318 (642)
. ....+.+..|+|+.+|+..+.++.. ..-|+|.+|+..
T Consensus 156 ~-~~~~~~~a~s~D~~~w~~~~~~i~~----~~~EgP~v~k~~ 193 (294)
T cd08984 156 R-RGSTTYAADSEDLYHWTVEGPVLGD----RPHEGPNVFRWK 193 (294)
T ss_pred C-CCeEEEEEECCCCCEEEeCCccccC----CCCCCCCeeEEC
Confidence 2 2223567789999999986655421 124889998874
No 23
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.30 E-value=5.5e-10 Score=116.14 Aligned_cols=197 Identities=18% Similarity=0.091 Sum_probs=130.0
Q ss_pred CCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCC----ccCCCCeEeeeEEEcc-CCcEEEE
Q 006523 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQ----WYDINGVWTGSATILP-DGQIVML 206 (642)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~----~~D~~Gv~SGSavv~~-dG~~~~~ 206 (642)
||. +++++|+|++|-.....+..+ ...|-..+|+||+||+.++.+|.+.. .....++|.++++..+ +|+++|+
T Consensus 5 ~~~-i~~~~~~yY~ygs~~~~~~~~-~~gi~~~sS~DLvnW~~~g~vl~~~~~~~~~~~~~~~waP~v~y~~~~g~Y~m~ 82 (265)
T cd08985 5 GGG-ILKVGGTYYWYGENKGGGDTA-FGGVSCYSSTDLVNWTFEGLALTPEEDSADLGPGRIIERPKVIYNAKTGKYVMW 82 (265)
T ss_pred cCc-eEEECCEEEEEEEecCCCCcc-cccEEEEECCCCccceECceeccccccccccccCcEEECCeEEEeCCCCEEEEE
Confidence 443 788899999998775432111 24578889999999999998887653 4456679999997643 6999999
Q ss_pred EeccCCC-ccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCCeeEEEEE
Q 006523 207 YTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVY 285 (642)
Q Consensus 207 YTG~~~~-~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~~G~~~lY 285 (642)
|++.... ....+++|+|++.. ..|+... .+. +.+ ...|||.|++ +++|++||++++..+ ..+.+.
T Consensus 83 ~~~~~~~~~~~~igvA~Sd~p~----Gpf~~~~-~~~---~~~---~~~~Dp~vf~-DdDG~~Yl~~~~~~~--~~i~i~ 148 (265)
T cd08985 83 MHIDSSDYSDARVGVATSDTPT----GPYTYLG-SFR---PLG---YQSRDFGLFV-DDDGTAYLLYSDRDN--SDLYIY 148 (265)
T ss_pred EEeCCCCCcceeEEEEEeCCCC----CCCEECC-ccC---CCC---CCccCCceEE-cCCCCEEEEEecCCC--CceEEE
Confidence 9987432 34578899997653 4577642 221 222 4579999965 578999999987532 224445
Q ss_pred E-eCCCCCCEEcccccccCCCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCC---CCceEEEEEEecCCCCc
Q 006523 286 Q-TTDFKTYELLDEYLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD---TKVDHYAIGTYNPANDK 361 (642)
Q Consensus 286 ~-S~Dl~~W~~~~~l~~~~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~---~~~~~Y~iG~fd~~~~~ 361 (642)
+ ++|+..+.- .... .......|||.+|+.+ .+++|..|... .....|++.+ +. .+.
T Consensus 149 ~L~~d~~~~~~--~~~~-~~~~~~~EaP~i~K~~---------------g~YYL~~S~~t~~~~~~~~y~~s~-s~-~GP 208 (265)
T cd08985 149 RLTDDYLSVTG--EVTT-VFVGAGREAPAIFKRN---------------GKYYLLTSGLTGWNPNDARYATAT-SI-LGP 208 (265)
T ss_pred EeCCCcccccc--eEEE-ccCCCccccceEEEEC---------------CEEEEEEccCCCccCCceEEEEec-CC-CCC
Confidence 4 367777753 2211 1122478999999985 26888777542 1234677664 22 345
Q ss_pred ccC
Q 006523 362 WTP 364 (642)
Q Consensus 362 f~p 364 (642)
|+.
T Consensus 209 ~~~ 211 (265)
T cd08985 209 WTD 211 (265)
T ss_pred ccc
Confidence 653
No 24
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=99.28 E-value=6.6e-11 Score=121.70 Aligned_cols=158 Identities=20% Similarity=0.246 Sum_probs=108.2
Q ss_pred CcCcccccccccceeee--ecC----CCCccCCccceEEC-CEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccC
Q 006523 107 YNWTNAMFTWQRTSFHF--QPE----KNWMNDPNGPLFYK-GWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAM 179 (642)
Q Consensus 107 ~~~~~~~~~w~Rp~yHf--~P~----~gwmNDPnG~~y~~-G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL 179 (642)
+..|..+..|+|..--+ .|. .+.+-||. +++.+ |+|||||+.+... ......+++|+|+|+++|+..+..+
T Consensus 37 ~a~S~D~~~w~~~~~~l~~~~~~~~~~~~~~~p~-v~~~~dg~~~~~Yt~~~~~-~~~~~~i~~A~S~D~~~w~~~~~~~ 114 (276)
T cd08979 37 AASSDDGTWWTRPPAPLPPGPPGSFDDGGVWTPS-VVRDPDGTYRMFYTGYDRP-KGAVQRIGLATSKDLIHWTKHGPNP 114 (276)
T ss_pred EEEcCCCCccEECCcCccCCCCCchhcCCeEcce-EEEcCCCeEEEEEecccCC-CCCcceEEEEECCCCCceEECCCCc
Confidence 34455566676655333 222 23456787 66667 9999999976532 2335789999999999999877544
Q ss_pred C-------CCCccCCCCeEeeeEEEccC-CcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCC
Q 006523 180 V-------PDQWYDINGVWTGSATILPD-GQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGP 251 (642)
Q Consensus 180 ~-------Pd~~~D~~Gv~SGSavv~~d-G~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~ 251 (642)
. +...++...+.++.++.+++ |+++|+|++........+.+|.|.|+ .+|++....+.+ ..+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~~~~~i~~a~S~D~-----~~W~~~~~~~~~--~~~~~~ 187 (276)
T cd08979 115 VPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDADERGAIGLATSPDL-----IHWTPVPPPPGP--RTGYDD 187 (276)
T ss_pred ceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEccCCCcEEEEEECCCC-----CcceECCCCCCC--CCcccC
Confidence 2 22334556788999876544 89999999876544567889999885 899987533312 222234
Q ss_pred CCCCCCEEEEeCCCCeEEEEEeee
Q 006523 252 KDFRDPTTAWAGPDGKWRLTIGSK 275 (642)
Q Consensus 252 ~~fRDP~V~w~~~~g~w~MviGa~ 275 (642)
..+.+|.++ + .+|+|+|++.+.
T Consensus 188 ~~~e~P~~~-~-~~g~~~l~~~~~ 209 (276)
T cd08979 188 GQLEVPQVV-K-IDGRWYLLYSGR 209 (276)
T ss_pred CcCccceEE-E-ECCEEEEEEEec
Confidence 578899994 3 569999999865
No 25
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=99.22 E-value=6.5e-11 Score=125.95 Aligned_cols=159 Identities=23% Similarity=0.248 Sum_probs=109.5
Q ss_pred cceEECCE--EEEEEeeCCCCCCCCCcEEEEEEecCccceEEcC-ccCCCCCccCCCCeEeeeEEEccCCcEEEEEeccC
Q 006523 135 GPLFYKGW--YHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLP-IAMVPDQWYDINGVWTGSATILPDGQIVMLYTGST 211 (642)
Q Consensus 135 G~~y~~G~--YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p-~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~ 211 (642)
|++.++|. |||+|...-. ..+..+.|.|.|+|.+||+..+ +.|.|+..|+..||....++. .+|+++|+||+..
T Consensus 36 gai~~~~~~R~~l~yr~~~~--~~~~~~iglA~S~DGi~f~~~~~pil~P~~~~e~~GvEDPRVt~-i~d~yymtYta~~ 112 (312)
T PF04041_consen 36 GAIVFDGGLRVYLLYRAYGS--DIGSSRIGLARSDDGIHFERDPEPILYPDTDYEEWGVEDPRVTK-IDDTYYMTYTAYS 112 (312)
T ss_dssp EEEEETTE--EEEEEEEEES--SSSEEEEEEEEESSSSS-EE-SS-SBEE-SSTTHTEEEEEEEEE-ETTEEEEEEEEEE
T ss_pred cEEEECCeeEEEEEEEeECC--CCceeEEEEEEccCCcCceECCCCEEccCCCCcccCccceeEEE-ECCEEEEEEEEec
Confidence 35556665 8888865422 2223479999999999999876 789999999999999999975 6899999999987
Q ss_pred CCccceEEEEEEcCCCCCCceeEEEcCCCceecCCC---CCCCCCCCCCEEEEeCCCCeEEEEEeeecCCeeEEEEEEeC
Q 006523 212 DKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPR---HIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQTT 288 (642)
Q Consensus 212 ~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~---g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~~G~~~lY~S~ 288 (642)
.. ...+++|.|+|. .+|+|++ +++.+.. ......-+|-..|-...+|+|+|+.+ .+.+.+..|+
T Consensus 113 ~~-~~~~~la~s~D~-----~~~~r~g--~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r-----~~~i~la~S~ 179 (312)
T PF04041_consen 113 GK-GPRIGLATSKDF-----KHWERHG--KIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHR-----DPSIWLAYSP 179 (312)
T ss_dssp SS-SEEEEEEEESSS-----SSEEEEE--CTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEE-----SSSBEEEEES
T ss_pred CC-CcccceEEccch-----HhhEEec--cccCcccccccccccccCceEEEEEEECCEEEEEEC-----CCCEEEEecC
Confidence 54 356899999995 8999984 3222111 00011225555532346899999987 3457788999
Q ss_pred CCCCCEEccc-ccccCCCCCceee
Q 006523 289 DFKTYELLDE-YLHAVPGTGMWEC 311 (642)
Q Consensus 289 Dl~~W~~~~~-l~~~~~~~gmWEC 311 (642)
|+++|+.... +.. ...++||+
T Consensus 180 Dl~~W~~~~~~~~~--~~~~~~d~ 201 (312)
T PF04041_consen 180 DLIHWGNHREPLLS--PRPGWWDS 201 (312)
T ss_dssp SSSSEEEEBETSB----STTSSCS
T ss_pred Cccccccccccccc--CCCCcChh
Confidence 9999987655 332 23357887
No 26
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=99.19 E-value=1.4e-09 Score=112.83 Aligned_cols=183 Identities=19% Similarity=0.164 Sum_probs=124.1
Q ss_pred CCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCc--cCCCCe-EeeeEEEccCCcEE
Q 006523 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQW--YDINGV-WTGSATILPDGQIV 204 (642)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~--~D~~Gv-~SGSavv~~dG~~~ 204 (642)
+..-||. ++.++|.|+||+...... ..+..++|+||+||+..+.++.+... +...+. |.++++ ..+|+++
T Consensus 8 ~~~~DP~-i~~~~~~yY~~~t~~~~~-----~~i~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~-~~~g~yy 80 (286)
T PF04616_consen 8 GDYADPS-IVRFGDGYYLYGTTDPEG-----PGIPVWSSKDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIH-YINGKYY 80 (286)
T ss_dssp SSECSEE-EEEETTEEEEEEEEBTCE-----SBEEEEEESSSSSEEEEEECESSTTTTSTTTSETTEEEEEE-EETTEEE
T ss_pred CCCCCCE-EEEECCEEEEEEEcCCCC-----CeEEEEECCCCcccccceeeecccccccccccccccCCeEE-EcCCeEE
Confidence 5667998 888999999999876543 34889999999999999877665443 223333 999986 5799999
Q ss_pred EEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCC--eeEE
Q 006523 205 MLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGK--TGIS 282 (642)
Q Consensus 205 ~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~--~G~~ 282 (642)
|+|+.........+.+|++++.. ..|+... ...+. .....||.+++ +++|++||+++..... .+.+
T Consensus 81 ~y~~~~~~~~~~~~~va~a~~~~----Gp~~~~~-~~~~~------~~~~iD~~vf~-d~dG~~Yl~~~~~~~~~~~~~i 148 (286)
T PF04616_consen 81 MYYSDSGGDAGSGIGVATADSPD----GPWTDPG-KIPIP------GGNSIDPSVFV-DDDGKYYLYYGSWDNGDPGGGI 148 (286)
T ss_dssp EEEEEESTSTTEEEEEEEESSTT----S-EEEEE-EEEEE------SSSSSSEEEEE-ETTSEEEEEEEESTTTSSEEEE
T ss_pred EEEEccCCCCCcceeEEEeCCcc----ccccccc-ceeec------cccccCceEEE-ecCCCcEEeCcccCCCccceeE
Confidence 99993333345668899998753 5788753 22222 24568999965 4679999999876432 2344
Q ss_pred EEEE-eCCCCCCEEcc-ccc-ccC--CCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCC
Q 006523 283 LVYQ-TTDFKTYELLD-EYL-HAV--PGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD 344 (642)
Q Consensus 283 ~lY~-S~Dl~~W~~~~-~l~-~~~--~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~ 344 (642)
.+.+ ++|...+.... ... ... ...+.-|+|-+|+.+ .+++|..|...
T Consensus 149 ~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~---------------g~yYl~~s~~~ 200 (286)
T PF04616_consen 149 YIAELDPDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHG---------------GKYYLFYSAGG 200 (286)
T ss_dssp EEEEEETTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEET---------------TEEEEEEEESG
T ss_pred EeecccCccccccCcccccccccccccCCccccceEEEEcC---------------CCEEEEEeccC
Confidence 4554 46776666544 222 221 133578999999985 26777777544
No 27
>PF08244 Glyco_hydro_32C: Glycosyl hydrolases family 32 C terminal; InterPro: IPR013189 This domain corresponds to the C-terminal domain of glycosyl hydrolase family 32. It forms a beta sandwich module [].; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 1W2T_C 1UYP_A 3UGG_A 3UGH_B 3UGF_B ....
Probab=99.19 E-value=1.7e-10 Score=99.57 Aligned_cols=74 Identities=32% Similarity=0.467 Sum_probs=54.3
Q ss_pred CccEEEEEEcCCCCceEEEEEEeccCCCCCeeEEEeecCCCCCCCCccccccce---eeeecc-CCeEEEEEEEeCCeEE
Q 006523 508 GPFGLLVNAHDSLSELTPIFFRSSNTTKGTNTYFCADETRSSLAPDVFKQVHGS---KVPVLQ-GEKLSMRILVDHSIVE 583 (642)
Q Consensus 508 g~fGl~v~ad~~~~e~t~v~f~~~~~~~g~~~~~~~Dr~rss~~~~~~~~~~g~---~~pvl~-~e~~~LrI~VD~S~vE 583 (642)
++|||.|+++.+.+|.|.|+|+...+ .+++||++|+... ....++. ..++.. ++.++||||||+|+||
T Consensus 9 ~~~g~~l~~s~~~~e~~~i~~d~~~~------~l~vDR~~s~~~~--~~~~~~~~~~~~~~~~~~~~l~L~i~vD~SsvE 80 (86)
T PF08244_consen 9 DSFGLRLRASNDGGEETSIGYDPANG------TLTVDRTNSGIND--FSEEFGTFVRSAPLDLGDKILKLRIFVDRSSVE 80 (86)
T ss_dssp CEEEEEEEEETTSSSEEEEEEETTTT------EEEEEETTSSTTS--CCCEEEEEEEEEETTTTESEEEEEEEEETTEEE
T ss_pred CCeEEEEEECCCccEEEEEEEECCCC------EEEEeCCCCcccc--cccccCcceEEeeccCCCCcEEEEEEEeCCEEE
Confidence 35899999888889999999975543 4999999998321 1122222 123322 3567999999999999
Q ss_pred EEEeCC
Q 006523 584 SFGQGG 589 (642)
Q Consensus 584 vF~n~G 589 (642)
||+|||
T Consensus 81 iFvNdG 86 (86)
T PF08244_consen 81 IFVNDG 86 (86)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 999997
No 28
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.18 E-value=1.6e-09 Score=113.58 Aligned_cols=178 Identities=20% Similarity=0.164 Sum_probs=115.0
Q ss_pred CCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCc--c----CCCCeEeeeEEEccCC
Q 006523 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQW--Y----DINGVWTGSATILPDG 201 (642)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~--~----D~~Gv~SGSavv~~dG 201 (642)
+.+-||. ++.++|.|++|...... ...+..++|+||+||++++.+|.+... + ...++|.+.++. .+|
T Consensus 6 ~~~~DP~-i~~~~~~yy~~~t~~~~-----~~~i~~~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~-~~g 78 (288)
T cd09000 6 GFYPDPS-ICRVGDDYYLVTSSFEY-----FPGVPIFHSKDLVNWELIGHALTRPSQLDLDGLPDSGGIWAPTIRY-HDG 78 (288)
T ss_pred CCCCCCC-EEEECCEEEEEECCccc-----CCCceEEECCCcCCcEEcccccCCcccccccCCCCCCceEcceEEE-ECC
Confidence 4677998 88889999998532211 134789999999999999887754321 1 346799999975 699
Q ss_pred cEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecC----
Q 006523 202 QIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIG---- 277 (642)
Q Consensus 202 ~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~---- 277 (642)
+++|+|++........+.+|.+++.. ..|+. |++.. ...+||.+++ +++|++||+.+....
T Consensus 79 ~yy~yy~~~~~~~~~~~~v~~s~~p~----gpw~~----~~~~~------~~~iDp~vf~-d~dG~~Y~~~~~~~~~~~~ 143 (288)
T cd09000 79 TFYLITTNVDGMKDGGNFIVTADDPA----GPWSD----PVWLD------SGGIDPSLFF-DDDGKVYLVGNGWDERRGY 143 (288)
T ss_pred EEEEEEEecCCCCCCceEEEEeCCCC----CCCcC----CEecC------CCccCCceeE-cCCCCEEEEecccCCcccc
Confidence 99999998753333456788887653 34652 33321 1568999965 478999999886421
Q ss_pred -CeeEEEEEEeCCCCCCEEccccc--ccCCCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecC
Q 006523 278 -KTGISLVYQTTDFKTYELLDEYL--HAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLD 343 (642)
Q Consensus 278 -~~G~~~lY~S~Dl~~W~~~~~l~--~~~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~ 343 (642)
..+.+.+.+. |...|+..+... ........-|+|.+|+.+ .+++|..|..
T Consensus 144 ~~~~~i~~~~l-~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~---------------g~YYl~ys~~ 196 (288)
T cd09000 144 NGHGGIWLQEI-DLETGKLLGEPKVIWNGTGGRWPEGPHLYKRD---------------GWYYLLIAEG 196 (288)
T ss_pred CCCCcEEEEEE-ccccCCCCCCcEEEEeCCCCCCcccCeEEEEC---------------CEEEEEEecC
Confidence 1233444433 334455443321 111112367999999874 2677777643
No 29
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.18 E-value=2.9e-09 Score=111.45 Aligned_cols=170 Identities=14% Similarity=0.118 Sum_probs=112.7
Q ss_pred CCccCCccceEE--CCEEEEEEeeCCCCCCC-CCcEEEEEEecCccceEEcCccCCCCCccCCCCeEeeeEEEcc-CCcE
Q 006523 128 NWMNDPNGPLFY--KGWYHLFYQYNPDSAVW-GNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILP-DGQI 203 (642)
Q Consensus 128 gwmNDPnG~~y~--~G~YHLFYQ~nP~~~~w-G~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~-dG~~ 203 (642)
+-+.||. ++++ +|+||||+.-.-....+ +.....+++|+||+||+....++.... ...++|...++.++ +|++
T Consensus 16 ~~~rDP~-I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~--~~~~~WAPev~~d~~~g~y 92 (276)
T cd08983 16 KGLRDPF-ILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDLVNWTFQRLVKVNPP--NAGNTWAPEAFWDAERGQY 92 (276)
T ss_pred CCccCCe-EEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcccCCcccceeecCCC--CcCcEeCccceEcCCCCeE
Confidence 4467998 7776 89999999865322222 346789999999999998886642211 24578999988654 7999
Q ss_pred EEEEeccCCC---ccceEEE--EEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCC
Q 006523 204 VMLYTGSTDK---SVQVQNL--AYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGK 278 (642)
Q Consensus 204 ~~~YTG~~~~---~~q~q~l--A~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~ 278 (642)
+|+|+..... ....+++ +.+.| +.+|++. .|++.+ + ....|+.++ + .+|+|||++....+
T Consensus 93 ~~~~s~~~~~~~~~~~~~~i~~~tt~D-----f~tft~p--~~~~~~--~---~~~ID~~v~-~-~~g~~Yl~~k~~~~- 157 (276)
T cd08983 93 VVYWSSRLYDNTGGFYNYRLYATTTSD-----FVTFTEP--KVWIDL--G---ANVIDTTVV-K-VGGTYYRFYKNEGS- 157 (276)
T ss_pred EEEEecccCCCCCCCccEEEEEEecCc-----ccccCCC--eEeecC--C---CCeEeeEEE-E-eCCEEEEEEecCCC-
Confidence 9999987542 1222333 33334 3688753 466542 2 356899985 3 35999999865322
Q ss_pred eeEEEEEEeCCCC-CCEEcccccccCCCCCceeeeceEEec
Q 006523 279 TGISLVYQTTDFK-TYELLDEYLHAVPGTGMWECVDFYPVA 318 (642)
Q Consensus 279 ~G~~~lY~S~Dl~-~W~~~~~l~~~~~~~gmWECPdlf~l~ 318 (642)
..+.+.+|++|. .|+...... ......-|-|.+|+..
T Consensus 158 -~~i~~~~s~~l~g~~~~~~~~~--~~~~~~~EgP~v~k~~ 195 (276)
T cd08983 158 -KDIELARSKSLTGPWTIVGTGD--AGWGGAVEGPTVFKLN 195 (276)
T ss_pred -CcEEEEEeCCCCCCceEecccc--cCCCCceeCCeEEEEC
Confidence 346677899876 676554321 1112367999999986
No 30
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=99.17 E-value=1.6e-09 Score=115.36 Aligned_cols=186 Identities=13% Similarity=0.209 Sum_probs=121.4
Q ss_pred CCccCCccceEECCEEEEEEeeCCCCC---------CCCCcEEEEEEecCccceEEcCccCCC--CCccCCCCeEeeeEE
Q 006523 128 NWMNDPNGPLFYKGWYHLFYQYNPDSA---------VWGNITWGHAVSADLIHWLYLPIAMVP--DQWYDINGVWTGSAT 196 (642)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~---------~wG~~~WGHA~S~DLvhW~~~p~AL~P--d~~~D~~Gv~SGSav 196 (642)
.+.-||. ++.++|+|+||....-... .+....+-..+|+||+||+.++.++.| ...|. .++|.+.++
T Consensus 7 ~~~aDP~-~~~~~g~yY~~~t~~~~~~~~~~~~~~~~~~~~~i~v~~S~DL~~W~~~g~v~~~~~~~~w~-~~~WAP~v~ 84 (311)
T cd09003 7 RYGADPT-AVVYNGRVYVYTTNDDYEYDSNTIKDNNYYNINDITVISSDDMVNWTDHGEIFVPNGIAKWA-GNSWAPSIA 84 (311)
T ss_pred CccCCCC-eEEECCEEEEEeCCCCccccccccccCCccccCcEEEEECCCCCCcEEcccccCcCCCCCcc-cccCCCceE
Confidence 4668998 6788999999987643221 122245778899999999999988863 22443 478999987
Q ss_pred EccC----CcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCC-CCCCCCC-CCCCEEEEeCCCCeEEE
Q 006523 197 ILPD----GQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPP-RHIGPKD-FRDPTTAWAGPDGKWRL 270 (642)
Q Consensus 197 v~~d----G~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p-~g~~~~~-fRDP~V~w~~~~g~w~M 270 (642)
. .+ |+++|+|+.. ...+++|+|++.. -.|+...+.|++... ++..... -.||.+|+ +++|++||
T Consensus 85 ~-~~~~~~gkyylyy~~~----~~~igva~SdsP~----GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~-DdDG~~Yl 154 (311)
T cd09003 85 V-KKINGKGKFYLYFANG----GGGIGVLTADSPV----GPWTDPLGKPLITGSTPGCAGVVWLFDPAVFV-DDDGQGYL 154 (311)
T ss_pred E-eccCCCCEEEEEEecC----CCeEEEEEcCCCC----CCcccCCCCeeecCCCCCccCCccccCCCeEE-CCCCCEEE
Confidence 4 56 9999999864 2347899987653 479876557877532 2322122 37999965 57899999
Q ss_pred EEeeecC-----CeeEEEEEE-eCCCCCCEEcccccccCCCCCceeeeceEEecccCccceeeccCCCCeEEEEeeecC
Q 006523 271 TIGSKIG-----KTGISLVYQ-TTDFKTYELLDEYLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLD 343 (642)
Q Consensus 271 viGa~~~-----~~G~~~lY~-S~Dl~~W~~~~~l~~~~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~ 343 (642)
++|+... ..+.+.+.+ ++|+..- .++... ....+.+|.|.+|+.+ .+++|..|..
T Consensus 155 ~~g~~~~~~~~~~~~~i~i~~l~~D~~~~--~g~~~~-i~~~~~~Egp~~~K~~---------------G~YYL~ys~~ 215 (311)
T cd09003 155 YFGGGVPGGRWANPNTARVIKLGDDMISV--DGSAVT-IDAPYFFEASGLHKIN---------------GTYYYSYCTN 215 (311)
T ss_pred EECCccCCCccccCCCEEEEEeCCCceec--cCCceE-ccCCCceEeeeEEEEC---------------CEEEEEEeCC
Confidence 9985321 112344444 3466543 232211 1112479999999874 2677776643
No 31
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.15 E-value=1.6e-09 Score=116.29 Aligned_cols=189 Identities=19% Similarity=0.231 Sum_probs=122.0
Q ss_pred cccccccccceeeeec-CCC-C----ccCCccceEECCEEEEEEeeCCCC-CCCCCcEEEEEEecCcc-ceEEcC-ccCC
Q 006523 110 TNAMFTWQRTSFHFQP-EKN-W----MNDPNGPLFYKGWYHLFYQYNPDS-AVWGNITWGHAVSADLI-HWLYLP-IAMV 180 (642)
Q Consensus 110 ~~~~~~w~Rp~yHf~P-~~g-w----mNDPnG~~y~~G~YHLFYQ~nP~~-~~wG~~~WGHA~S~DLv-hW~~~p-~AL~ 180 (642)
|..+..|+|-..=|.+ +.+ | +.-|. +++++|+|||||+..-.. ..-...+.|.|+|.+.. .|+++. +.|.
T Consensus 86 S~Dgv~W~~~g~~L~~~~~g~Wd~~~vwaP~-Vi~~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWtr~d~Pil~ 164 (349)
T cd08992 86 SKDGWTWKEEGPAIGRGEKGAYDDRSVFTPE-VLEHEGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWTKSDEPILS 164 (349)
T ss_pred CCCCCCceECCccccCCCCCCccccceECcE-EEEECCEEEEEEEecccccCCCCcceEEEEEECCcccccccCCCcEec
Confidence 4445678776632322 122 3 33465 778899999999953211 11123568899988876 598665 4455
Q ss_pred CCC------------------ccCCCCeEeeeEEEccCCcEEEEEeccCC-------CccceEEEEEEcCCCCCCceeEE
Q 006523 181 PDQ------------------WYDINGVWTGSATILPDGQIVMLYTGSTD-------KSVQVQNLAYPADPSDPLLLDWV 235 (642)
Q Consensus 181 Pd~------------------~~D~~Gv~SGSavv~~dG~~~~~YTG~~~-------~~~q~q~lA~S~D~~d~ll~~w~ 235 (642)
|+. .||..+|...+++ ..+|+++|||+|+.. ...+.+++|+|+++- --|+
T Consensus 165 p~~dg~w~~d~~~~~~~~~~g~wD~~~v~~P~v~-~~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~----GPf~ 239 (349)
T cd08992 165 PSNDGIWKGDEDNRFLVKKKGSFDSHKVHDPCLF-PFNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPE----GPYV 239 (349)
T ss_pred CCcCCceeeccCceeEeccCCCcccCceECCEEE-EECCEEEEEEEccccCcccccCCCCceEEEEEECCCC----CCCE
Confidence 542 3677778777765 579999999999752 134678999998864 4699
Q ss_pred EcCCCceecCCCCCCCCCCCCCEEEEeCCCCeE-EEEEeeecCCeeEEEEEEeCCCCCCEEcccccccCCCCCceeeece
Q 006523 236 KYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKW-RLTIGSKIGKTGISLVYQTTDFKTYELLDEYLHAVPGTGMWECVDF 314 (642)
Q Consensus 236 K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w-~MviGa~~~~~G~~~lY~S~Dl~~W~~~~~l~~~~~~~gmWECPdl 314 (642)
|.+.|||+.. .+ ..+| |+ ..+.+ .|+..-. .+.|. +..|+|.++|+....+.......|..+|||-
T Consensus 240 r~~~nPi~~~------~~--~~~~-~~-~~~~~~~~~~~d~-~~~~~--~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 306 (349)
T cd08992 240 KSPYNPITNS------GH--ETCV-WQ-YKGGIAAMLTTDG-PEKNT--IQFAPDGINFEIMAHIKGAPEAIGPYRRPDA 306 (349)
T ss_pred eCCCCcccCC------CC--ceEE-Ee-cCCceEEEEeccC-CCCce--EEeCCCCccEEEeeeccCCCccccCccCccc
Confidence 9988999852 12 2377 97 45566 5554332 22344 5679999999987766433223456677776
Q ss_pred EEe
Q 006523 315 YPV 317 (642)
Q Consensus 315 f~l 317 (642)
+.-
T Consensus 307 ~~~ 309 (349)
T cd08992 307 DED 309 (349)
T ss_pred ccC
Confidence 543
No 32
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.96 E-value=4e-08 Score=103.68 Aligned_cols=135 Identities=19% Similarity=0.151 Sum_probs=94.0
Q ss_pred CCccCCccceEE--CCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCC-ccCCCCeEeeeEEEccCCcEE
Q 006523 128 NWMNDPNGPLFY--KGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQ-WYDINGVWTGSATILPDGQIV 204 (642)
Q Consensus 128 gwmNDPnG~~y~--~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~-~~D~~Gv~SGSavv~~dG~~~ 204 (642)
.++-||. ++++ +|+|+||..............+.+.+|+||+||+..+.++.+.. .+...++|...+. ..+|+++
T Consensus 4 ~~~~DP~-v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~~~~~~WAP~v~-~~~G~yy 81 (291)
T cd08981 4 IRIRDPF-ILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFWADDNFWAPEVH-EYKGRYY 81 (291)
T ss_pred ccccCCE-EEEECCCCEEEEEEecCccccccCCCcEEEEECCChhcccccceeeccCCCcCccccccCCeee-eeCCEEE
Confidence 4578998 7777 99999999765322101123578999999999999998886533 3445689999986 5799999
Q ss_pred EEEeccCCC-ccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEee
Q 006523 205 MLYTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGS 274 (642)
Q Consensus 205 ~~YTG~~~~-~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa 274 (642)
|+|+..... ....+.+|++++.. -.|+.....|+... .....||.++ .+++|++||+++.
T Consensus 82 ly~s~~~~~~~~~~~~va~s~~p~----GP~~~~~~~~~~~~-----~~~~iDp~~f-~DdDG~~Yl~~~~ 142 (291)
T cd08981 82 MFATFHNPGGERRGTAILVSDSPE----GPFVPHSDGPVTPE-----DWMCLDGTLY-VDEDGKPWMVFCH 142 (291)
T ss_pred EEEEeccCCCceeeEEEEECCCCC----CCCEeCCCCccCCC-----CCceEcCceE-EcCCCCEEEEEEe
Confidence 999876432 22345788887642 46877544454321 1235799985 4578999999874
No 33
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=98.93 E-value=7.3e-08 Score=100.87 Aligned_cols=129 Identities=20% Similarity=0.262 Sum_probs=89.5
Q ss_pred CCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCcc-------CCCCeEeeeEEEccCCcEE
Q 006523 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWY-------DINGVWTGSATILPDGQIV 204 (642)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~-------D~~Gv~SGSavv~~dG~~~ 204 (642)
||. ++.++|+|+||.... .+..++|+||+||+..+.+|.+...+ ...++|...++ ..+|+++
T Consensus 2 DP~-vi~~~~~YY~~~T~~---------g~~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~-~~~G~yy 70 (279)
T cd08988 2 DPV-IIKEGDTWYVFGTGP---------GITILSSKDLVNWTYSGSAFATEPTWKKRVPPSFDGHLWAPDIY-QHNGKFY 70 (279)
T ss_pred CCE-EEEECCEEEEEEecC---------CEEEEECCCcCCccccCccccCCCccccccCCCCCCCEecceEE-EECCEEE
Confidence 898 777889999987631 36789999999999998887543322 24689999986 4689999
Q ss_pred EEEeccCCC-ccceEEEEEEcCCCCCCc-eeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeee
Q 006523 205 MLYTGSTDK-SVQVQNLAYPADPSDPLL-LDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSK 275 (642)
Q Consensus 205 ~~YTG~~~~-~~q~q~lA~S~D~~d~ll-~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~ 275 (642)
|+|++.... ....+++|++++...|.- ..|++ ..+++..... ....-.||.+++ ++||++||+.|+.
T Consensus 71 lyys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~--~~~i~~~~~~-~~~~~iDp~~f~-DdDG~~Yl~~g~~ 139 (279)
T cd08988 71 LYYSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEK--GGVVISSDAS-DNYNAIDPAIIF-DQHGQPWLSFGSF 139 (279)
T ss_pred EEEEeccCCCCCceEEEEEcCCCCCCCcCcCccc--cCceEecCCC-CCCCccCCceEE-cCCCCEEEEeccc
Confidence 999987532 245678999987643310 11443 2566653211 113457999965 5789999999863
No 34
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=98.81 E-value=3.1e-07 Score=95.70 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=88.0
Q ss_pred CCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCcc------CCCCeEeeeEEEccCC
Q 006523 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWY------DINGVWTGSATILPDG 201 (642)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~------D~~Gv~SGSavv~~dG 201 (642)
+..-||. ++.++|.|+||+...... ......+|+||+||+..+.++...... ...++|...++ ..+|
T Consensus 6 ~~~~DP~-ii~~~~~yY~~~t~~~~~-----~g~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~-~~~G 78 (269)
T cd08989 6 GDNPDPS-IIRAGDDYYMASSTFEWF-----PGVQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPYSGGIWAPCLS-YYDG 78 (269)
T ss_pred CCCCCCc-EEEECCeEEEEECccccC-----CCcEEEECCccCCCEEccccccCccccccccCCCCCcEEcceEE-EECC
Confidence 4567998 888999999998642211 125678999999999988776432111 24579999986 5799
Q ss_pred cEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEee
Q 006523 202 QIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGS 274 (642)
Q Consensus 202 ~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa 274 (642)
+++|+|+.........+.+|++++.. -.|+. |+... ..-.||.+++ +++|+.||+.|.
T Consensus 79 ~yy~yy~~~~~~~~~~i~va~sd~~~----Gpw~~----~~~~~------~~~IDp~~f~-D~dG~~Yl~~~~ 136 (269)
T cd08989 79 KFWLIYTAVKVWKDCHNYLFTAEDIT----GPWSR----PIFLN------YGGFDPSLFH-DDDGKKYLINMG 136 (269)
T ss_pred EEEEEEeccccCCCceEEEEEECCCC----CCCcC----CEECC------CCcccCceEE-cCCCCEEEEecC
Confidence 99999998754334567889887653 24653 44322 1347999955 579999999875
No 35
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.76 E-value=4.7e-08 Score=101.45 Aligned_cols=98 Identities=22% Similarity=0.325 Sum_probs=75.2
Q ss_pred eeEEEccCCcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCC--CCCCCCCCCCCEEEEeCCCCeEEE
Q 006523 193 GSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPP--RHIGPKDFRDPTTAWAGPDGKWRL 270 (642)
Q Consensus 193 GSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p--~g~~~~~fRDP~V~w~~~~g~w~M 270 (642)
..++ ..+|+++|+|++........+++|.|.|+ ++|++.+ +|+|.++ ...+...++||.|+ + .+|+|+|
T Consensus 3 P~v~-~~~G~y~l~y~~~~~~~~~~ig~A~S~Dg-----~~~~~~~-~~~i~p~~~~~~~~~gv~dP~v~-~-~~g~y~m 73 (268)
T cd08993 3 PAVV-YDNGEFYLLYRAAGNDGVIRLGLARSRDG-----LHFEIDP-DPPVWPPPEDGFEEGGVEDPRIV-K-IDDTYYI 73 (268)
T ss_pred CeEE-EECCEEEEEEEEECCCCceEEEEEEECCC-----ceEEECC-cceEcCCCCCcccccCccCcEEE-E-ECCEEEE
Confidence 3454 47999999999876555678999999995 8999975 5655442 23456788999995 3 5889999
Q ss_pred EEeeec--CCeeEEEEEEeCCCCCCEEcccc
Q 006523 271 TIGSKI--GKTGISLVYQTTDFKTYELLDEY 299 (642)
Q Consensus 271 viGa~~--~~~G~~~lY~S~Dl~~W~~~~~l 299 (642)
++++.. .....+.+++|+|+.+|+..+..
T Consensus 74 ~Yta~~~~~~~~~i~lA~S~D~~~W~~~~~~ 104 (268)
T cd08993 74 TYAARPNAPNGTRIGLATTKDFITFERLGTS 104 (268)
T ss_pred EEEccCCCCCCcEEEEEEeCCcceEEEeccc
Confidence 998864 34457889999999999998654
No 36
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.74 E-value=4.9e-07 Score=94.78 Aligned_cols=187 Identities=14% Similarity=0.102 Sum_probs=112.9
Q ss_pred CCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCcc--CCCCC-ccCCCCeEeeeEEEccCCcEEEEEe
Q 006523 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIA--MVPDQ-WYDINGVWTGSATILPDGQIVMLYT 208 (642)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~A--L~Pd~-~~D~~Gv~SGSavv~~dG~~~~~YT 208 (642)
||. ++.+++.|+||+.-.. .....++|+||+||+..... +.+.. .....++|...+. ..+|+++|+|+
T Consensus 2 DP~-v~~~~d~yY~~~T~~~-------~~~~i~~S~dl~~w~~~~~~~~~~~~~~~~~~~~~WAP~i~-~~~g~yylyys 72 (288)
T cd08980 2 DPW-VIRHDGYYYFTATTGE-------DRIELRRSDTLAGLATAESKVVWTPPDSGPYSGNLWAPELH-YIDGKWYIYFA 72 (288)
T ss_pred CCe-EEEECCEEEEEEEeCC-------CcEEEEecCChhHhhcCCcEEEecCCCCCCccccEECceEE-EECCEEEEEEE
Confidence 897 7788889999987431 34789999999999876532 22322 1345689999986 47999999999
Q ss_pred ccCC--CccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecC---CeeEEE
Q 006523 209 GSTD--KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIG---KTGISL 283 (642)
Q Consensus 209 G~~~--~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~---~~G~~~ 283 (642)
.... ...+.+++|.+++..++. ..|+.. .+++... + ..-.||.++ .+ +|++||+++.... ....+.
T Consensus 73 ~~~~~~~~~~~~~v~~a~~~~~~~-Gpw~~~--~~~~~~~-~---~~~iDp~~~-~d-dG~~Yl~~~~~~~~~~~~~~i~ 143 (288)
T cd08980 73 AGDGGGNANHRMYVLENAGADPPT-GPWTFK--GRLADPT-D---RWAIDGTVF-EH-NGQLYFVWSGWEGRTNGNQNLY 143 (288)
T ss_pred ccCCCCCcceeEEEEEeCCCCCCC-CCceEe--eEeccCC-C---CeeeeeEEE-EE-CCEEEEEEEccCCCCCCCccEE
Confidence 8754 234566778877532233 579874 3443211 1 233699995 43 5999999875421 122344
Q ss_pred EEEeCCCCCCEEcccc--cccCC------CCCceeeeceEEecccCccceeeccCCCCeEEEEeeecCCCCceEEEEE
Q 006523 284 VYQTTDFKTYELLDEY--LHAVP------GTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVDHYAIG 353 (642)
Q Consensus 284 lY~S~Dl~~W~~~~~l--~~~~~------~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~~~~~~Y~iG 353 (642)
+.+.++...+. ++. +.... +.+.-|-|.+++.+ .+++|..|........|.+|
T Consensus 144 ~~~l~~~~~~~--g~~~~i~~p~~~we~~~~~~~EgP~~~k~~---------------G~yYl~yS~~~~~~~~Y~v~ 204 (288)
T cd08980 144 IAKMSNPWTLT--GPRVLISRPEYDWERQGPGVNEGPAALKRN---------------GKVFLTYSASGSWTPDYCLG 204 (288)
T ss_pred EEECCCCCccC--CcceEecCCCCCceecCceeeECcEEEEEC---------------CEEEEEEECCCCCCCCCEEE
Confidence 45555433332 221 11110 01245777777764 25777777554433445655
No 37
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=98.71 E-value=5.5e-07 Score=93.83 Aligned_cols=159 Identities=17% Similarity=0.133 Sum_probs=101.2
Q ss_pred CCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCc-----------cCCCCeEeeeEE
Q 006523 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQW-----------YDINGVWTGSAT 196 (642)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~-----------~D~~Gv~SGSav 196 (642)
++.-||. +++++|+|++|....-. ...+...+|+||+||+..+.++..... --..++|...++
T Consensus 9 ~~~~DP~-v~~~~~~yY~~~t~~~~-----~~gi~v~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~WAP~v~ 82 (269)
T cd09001 9 ADYPDPD-VIRVGDDYYMVSTTMHY-----SPGAPILHSKDLVNWEIIGYVYDRLDDGDAYNLENGGNAYGKGQWAPSLR 82 (269)
T ss_pred CCCCCCe-EEEECCEEEEEECCccc-----CCCCEEEEcccccCCeEcccccccccccccccccccCCCCCCCEECCceE
Confidence 4557998 77889999999864211 113567889999999998876643211 013579999986
Q ss_pred EccCCcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec
Q 006523 197 ILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI 276 (642)
Q Consensus 197 v~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~ 276 (642)
. .+|+++|+|+... ..+.+|++++.. -.|+.. .++. ...||.+++ +++|+.||+.+..
T Consensus 83 ~-~~gkyy~yys~~~----~~~~v~~a~~p~----Gpw~~~--~~~~---------~~iDp~~f~-D~dG~~Yl~~~~~- 140 (269)
T cd09001 83 Y-HNGTFYVFFCTNT----GGTYIYTADDPE----GPWTKT--ALDG---------GYHDPSLLF-DDDGTAYLVYGGG- 140 (269)
T ss_pred E-ECCEEEEEEEecC----CCeEEEEcCCCC----CCCcCC--CcCC---------CcccCceEE-cCCCCEEEEeCCC-
Confidence 4 6999999999862 346788887642 356543 1211 347999965 5789999998753
Q ss_pred CCeeEEEEEE-eCCCCCCEEcc-cccccCC-CCCceeeeceEEec
Q 006523 277 GKTGISLVYQ-TTDFKTYELLD-EYLHAVP-GTGMWECVDFYPVA 318 (642)
Q Consensus 277 ~~~G~~~lY~-S~Dl~~W~~~~-~l~~~~~-~~gmWECPdlf~l~ 318 (642)
+ +.+.+ +.|+....-.. .++.... ..+.-|-|.+++-+
T Consensus 141 ---~-i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~ 181 (269)
T cd09001 141 ---T-IRLVELSPDLTGVGGKDQVIIDAGEEIGLGAEGSHLYKIN 181 (269)
T ss_pred ---c-EEEEEECcccCCcCCCceEEEeCCCccccccccCeEEEEC
Confidence 2 22333 56766552111 1222111 12357899888753
No 38
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=98.57 E-value=1.2e-06 Score=91.32 Aligned_cols=152 Identities=18% Similarity=0.154 Sum_probs=98.0
Q ss_pred cccccccccceeeeecCCCC-----ccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcC--ccCCCC
Q 006523 110 TNAMFTWQRTSFHFQPEKNW-----MNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLP--IAMVPD 182 (642)
Q Consensus 110 ~~~~~~w~Rp~yHf~P~~gw-----mNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p--~AL~Pd 182 (642)
|..+..|++...-+.|+.++ +-.|+ +++.+|+|||||.-+... .......++|+|+|+++|+..+ +.+.+.
T Consensus 37 S~Dlv~W~~~~~al~~~~~~~d~~g~~sgs-~~~~~g~~~l~YTg~~~~-~~~~~~i~~A~S~D~~~w~k~~~~pv~~~~ 114 (280)
T cd08995 37 TKDLVNYEDHGEAIPRGGDEDDDDAIGTGS-VIKGEGTYHAFYTGHNLD-GKPKQVVMHATSDDLITWTKDPEFILIADG 114 (280)
T ss_pred ccCcCccEECcceecCCCCcccccCceEeE-EEeeCCEEEEEEEEECCC-CCCcEEEEEEECCCCCccEECCCCeecCCc
Confidence 45567787766666664332 22343 566789999999865322 1124568999999999999865 233323
Q ss_pred CccCCCCeEeeeEEEcc-CCcEEEEEeccCC----CccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCC
Q 006523 183 QWYDINGVWTGSATILP-DGQIVMLYTGSTD----KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDP 257 (642)
Q Consensus 183 ~~~D~~Gv~SGSavv~~-dG~~~~~YTG~~~----~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP 257 (642)
..++...+-...++.++ +|+++|+|.+... .....+.++.|.|. .+|+.. .+++.+..+ ..+--|
T Consensus 115 ~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~~~~~~g~i~~~~S~Dl-----~~W~~~--~~~~~~~~~---~~~E~P 184 (280)
T cd08995 115 EGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDGPYNRRGCIALFTSKDL-----KNWEYE--EPFYAPGLY---FMPECP 184 (280)
T ss_pred cccccCCccCCcEEEcCCCCeEEEEEEeccCCCCCCCCeEEEEEEeCCc-----Ccceec--CceecCCCc---ceeecc
Confidence 34444455567776543 5999999987542 22345667888874 799876 455543211 235568
Q ss_pred EEEEeCCCCeEEEEEeee
Q 006523 258 TTAWAGPDGKWRLTIGSK 275 (642)
Q Consensus 258 ~V~w~~~~g~w~MviGa~ 275 (642)
.+ ++ .+|+|+|+++..
T Consensus 185 ~l-~~-~~g~~~L~~s~~ 200 (280)
T cd08995 185 DL-FK-MGDWWYLVYSEF 200 (280)
T ss_pred eE-EE-ECCEEEEEEEec
Confidence 87 44 679999999865
No 39
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=98.56 E-value=4.8e-07 Score=94.82 Aligned_cols=123 Identities=24% Similarity=0.314 Sum_probs=86.8
Q ss_pred CCccceEECCEEEEEEeeCCCC----CCCCCcEEEEEEecC-ccceEEc-CccCCCCC-ccCCCCeEeeeEEEccCCcEE
Q 006523 132 DPNGPLFYKGWYHLFYQYNPDS----AVWGNITWGHAVSAD-LIHWLYL-PIAMVPDQ-WYDINGVWTGSATILPDGQIV 204 (642)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~----~~wG~~~WGHA~S~D-LvhW~~~-p~AL~Pd~-~~D~~Gv~SGSavv~~dG~~~ 204 (642)
+|. +++++|+|||||..+... ...++...|+|+|+| +-+|+.+ .++|.|.. .||..+++.++++..++|+++
T Consensus 82 ~P~-vi~~~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~~ 160 (291)
T cd08994 82 NPT-IKRFDGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSYL 160 (291)
T ss_pred CCe-EEEECCEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCEE
Confidence 676 677899999999976431 122356799999999 4699984 45666644 368888999999865589999
Q ss_pred EEEeccCCC---ccceEEEEEEcCCCCCCceeEEEcCCCceecC--CCC-CCCCCCCCCEE
Q 006523 205 MLYTGSTDK---SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVP--PRH-IGPKDFRDPTT 259 (642)
Q Consensus 205 ~~YTG~~~~---~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~--p~g-~~~~~fRDP~V 259 (642)
|+|+|+... ..+.|++|+|.|.. ..|+|...+||+.+ ... .++.-|++.-.
T Consensus 161 m~y~g~~~~~~~~~~~~gla~s~d~~----g~~~~~~~~~v~~~~~~~~~~dP~V~~~~g~ 217 (291)
T cd08994 161 LVYKGGTYNPTKGNRKYGVAIADSPT----GPYTKVSGPPFIEPGDNGNTEDPFVWYDKGQ 217 (291)
T ss_pred EEEeccccCCCCCcEEEEEEEeCCCC----CCCEECCCCccccCCCCCceeCceEEEeCCE
Confidence 999998642 35778999998862 47999866676422 111 23445565543
No 40
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=98.55 E-value=7.9e-07 Score=93.30 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=85.2
Q ss_pred CccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCccCCCCeEeeeEEEccCCcEEEEEe
Q 006523 129 WMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLYT 208 (642)
Q Consensus 129 wmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YT 208 (642)
..-||. +++.+|+|+|+..-.. + .......+|+||+||+..+.++.+. ..++|...+. ..+|+++|+|+
T Consensus 14 ~~~DP~-i~~~~~~yY~~~t~~~----~-~~gi~i~~S~DL~~W~~~g~~~~~~----~~~~WAP~i~-~~~gkyy~yys 82 (280)
T cd09002 14 DYPDPS-ILRDGEDYYMTHSSFK----Y-TPGLVIWHSRDLVNWTPVGPALPEY----EGDVWAPDLC-KYDGRYYIYFP 82 (280)
T ss_pred CCCCCE-EEEECCEEEEEEcchh----c-CCCEEEEECCCcCCceEccccccCC----CCCEEcCeeE-EECCEEEEEEE
Confidence 345997 8888999999765211 1 1246778999999999988777542 4579999885 58999999999
Q ss_pred ccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEee
Q 006523 209 GSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGS 274 (642)
Q Consensus 209 G~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa 274 (642)
.......+.+.+|++++.. -.|++ |+... .....||.+++ +++|++||+.+.
T Consensus 83 ~~~~~~~~~~~va~ad~p~----Gpw~~----~~~~~-----~~~~IDp~vf~-DddG~~Yl~~~~ 134 (280)
T cd09002 83 AIPEGGNWTNMVIWADSPE----GPWSK----PIDLK-----IGGCIDPGHVV-DEDGNRYLFLSG 134 (280)
T ss_pred eecCCCCceEEEEEECCCC----CCCcC----CEecC-----CCCccCCceEE-cCCCCEEEEECC
Confidence 8764444567888886653 35754 22111 11236999966 578999999863
No 41
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.53 E-value=7.3e-07 Score=92.97 Aligned_cols=130 Identities=20% Similarity=0.187 Sum_probs=86.9
Q ss_pred CccCCccceEE-CCEEEEEEeeCCCCC----CC-CCcEEEEEEecCccceEEcCccCCCCCc------------cCCCCe
Q 006523 129 WMNDPNGPLFY-KGWYHLFYQYNPDSA----VW-GNITWGHAVSADLIHWLYLPIAMVPDQW------------YDINGV 190 (642)
Q Consensus 129 wmNDPnG~~y~-~G~YHLFYQ~nP~~~----~w-G~~~WGHA~S~DLvhW~~~p~AL~Pd~~------------~D~~Gv 190 (642)
||-||. ++.. +|.|+|+......+. .| .....-.++|+||+||+..+.++..... ....++
T Consensus 1 ~~rDP~-v~~~~dg~Yy~~~T~~~~~~~~~~~~~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~ 79 (269)
T cd08986 1 WIRDTY-VTLGPDGYYYLTGTTPPPGLPFEDCSIVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYKNAV 79 (269)
T ss_pred CCcCCe-EEecCCCcEEEEEccCCccccccccccCCCceEEEeCccccCccccCcccccCCcccccccccccCCcccCCc
Confidence 688998 5555 679999987543221 01 1234668999999999998877643321 235679
Q ss_pred EeeeEEEccCCcEEEEEeccCCC-ccceEEEEEEcCCCCCCceeEEEcCCC-ceecCCCCCCCCCCCCCEEEEeCCCCeE
Q 006523 191 WTGSATILPDGQIVMLYTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGN-PVLVPPRHIGPKDFRDPTTAWAGPDGKW 268 (642)
Q Consensus 191 ~SGSavv~~dG~~~~~YTG~~~~-~~q~q~lA~S~D~~d~ll~~w~K~~~n-PVl~~p~g~~~~~fRDP~V~w~~~~g~w 268 (642)
|...+. ..+|+++|+|+..... ....+.+|++++.. -.|+..... |+ ..-.||.++ .+++|++
T Consensus 80 WAP~v~-~~~g~yyl~~s~~~~~~~~~~i~va~a~~p~----Gp~~~~~~~~~~---------~~~iD~~~f-~D~DG~~ 144 (269)
T cd08986 80 WAPELH-YIKGRWYLVACMNNPGYGGSSILLSTSGKIE----GPYKHITGNKPL---------FPGIDPSLF-EDDDGKV 144 (269)
T ss_pred CCceEE-EECCEEEEEEEccCCCCCceEEEEEeCCCCC----CCcEeccCCCCC---------CCccCCceE-EcCCCCE
Confidence 999886 4689999999976432 23446677766542 357764322 11 124699995 4578999
Q ss_pred EEEEee
Q 006523 269 RLTIGS 274 (642)
Q Consensus 269 ~MviGa 274 (642)
||+.+.
T Consensus 145 Yl~~~~ 150 (269)
T cd08986 145 YLVWHN 150 (269)
T ss_pred EEEeeC
Confidence 999875
No 42
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=8.8e-07 Score=92.23 Aligned_cols=150 Identities=22% Similarity=0.243 Sum_probs=109.6
Q ss_pred cceEECCEEEEEEeeCC--CCCCCCCcEEEEEEecCccc-eEEcC-ccCCC-CCccCCCCeEeeeEEEccCCcEEEEEec
Q 006523 135 GPLFYKGWYHLFYQYNP--DSAVWGNITWGHAVSADLIH-WLYLP-IAMVP-DQWYDINGVWTGSATILPDGQIVMLYTG 209 (642)
Q Consensus 135 G~~y~~G~YHLFYQ~nP--~~~~wG~~~WGHA~S~DLvh-W~~~p-~AL~P-d~~~D~~Gv~SGSavv~~dG~~~~~YTG 209 (642)
++++.++++||+|.--- +...-.-.|.+-|.|+|+++ |+-.+ +.+.| ..+++.-||....++ ..+|+++|.|||
T Consensus 35 av~~~~~~~~~l~Rv~~~yye~~~~~s~l~ia~s~dgi~~~~~e~ep~~~P~~~~~e~~G~EDPRvt-~I~~~y~mtYTa 113 (314)
T COG2152 35 AVVLVGGELLLLYRVVEGYYEDHSSISHLRIARSDDGIGEFEIEPEPTLWPANYPYEIYGIEDPRVT-KIGGRYYMTYTA 113 (314)
T ss_pred eeEEECCEEEEEEEEeccccccCccceEEEEEecccCCCceecCCcceEecCCCchhhhcccCceEE-EECCEEEEEEEe
Confidence 57888999999998610 01111346788899999999 98766 77889 668888999999997 479999999999
Q ss_pred cCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec-CC--eeEEEEEE
Q 006523 210 STDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-GK--TGISLVYQ 286 (642)
Q Consensus 210 ~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~-~~--~G~~~lY~ 286 (642)
.+.. .+..++|.+.|- .+|+|. .+++. | ++||-.++=...+|+|.|+---.. +. .+.+.+..
T Consensus 114 ~s~~-g~~~~la~t~~f-----~n~~ri--g~i~~-p------dn~~~~lfP~~~ngk~~~lhr~~~~~~~~~~niwia~ 178 (314)
T COG2152 114 YSDK-GPRLALAVTKDF-----LNWERI--GAIFP-P------DNKDAALFPKKINGKYALLHRPVLGEYGMKGNIWIAF 178 (314)
T ss_pred cCCC-Ccccchhhhhhh-----hhhhhc--ccccC-C------CCCCceEeeEEecCcEEEEEeecccccCccCceEEEE
Confidence 8543 477899999985 789996 23332 2 456655532235789998864332 22 36689999
Q ss_pred eCCCCCCEEccccc
Q 006523 287 TTDFKTYELLDEYL 300 (642)
Q Consensus 287 S~Dl~~W~~~~~l~ 300 (642)
|.|+.+|...-.++
T Consensus 179 S~dl~~w~~~~~~l 192 (314)
T COG2152 179 SPDLEHWGIHRKLL 192 (314)
T ss_pred cCCccCCCccceee
Confidence 99999998765444
No 43
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=98.50 E-value=7.5e-06 Score=89.58 Aligned_cols=183 Identities=20% Similarity=0.188 Sum_probs=112.4
Q ss_pred cCCccceE-ECCEEEEEEeeCCCC----CCCCCcEEEEEEecCcc----ceEEcCccCCCCCcc-CCCCeEeeeEEEcc-
Q 006523 131 NDPNGPLF-YKGWYHLFYQYNPDS----AVWGNITWGHAVSADLI----HWLYLPIAMVPDQWY-DINGVWTGSATILP- 199 (642)
Q Consensus 131 NDPnG~~y-~~G~YHLFYQ~nP~~----~~wG~~~WGHA~S~DLv----hW~~~p~AL~Pd~~~-D~~Gv~SGSavv~~- 199 (642)
-|+.|-+. ++|+.-+|-.-.|.. ..|+.-+.++.-|++.. +|++.+.++.....+ ....-|||||+++.
T Consensus 63 qd~~G~~~~~~Gy~vvfaL~a~r~~~~~~Rh~~A~I~~fY~k~G~~~~~~W~~~G~vf~~g~~~~~~s~EWSGSA~l~~~ 142 (428)
T PF02435_consen 63 QDADGNVVNYNGYQVVFALTADRHEDPDDRHDDARIYLFYSKDGDNANDGWKNGGPVFPEGASFVPGSREWSGSATLNND 142 (428)
T ss_dssp E-TTSSBEEBTTEEEEEEEEE-TT--GGGCSCGEEEEEEEEETT--SGGG-EEEEESS-TTCCCCGCEEEEEEEEEESTT
T ss_pred ecccccEEEECCEEEEEEEecCCccCCccccCCcEEEEEEecCCCCccCCceECcccCCCCCCCCccCcEecCceEEcCC
Confidence 35556444 689666666665543 24567899999999998 999999777554321 23457999999887
Q ss_pred CCcEEEEEeccCC----Cccce---EE--EEEEcCCCCCCceeEEEcCCCceecCCCCC--C------CCCCCCCEEEEe
Q 006523 200 DGQIVMLYTGSTD----KSVQV---QN--LAYPADPSDPLLLDWVKYPGNPVLVPPRHI--G------PKDFRDPTTAWA 262 (642)
Q Consensus 200 dG~~~~~YTG~~~----~~~q~---q~--lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~--~------~~~fRDP~V~w~ 262 (642)
||++.||||.... ...|. ++ ++...|. ..-+..|.++ ..++. +.|. . ...||||++| .
T Consensus 143 dg~I~LfYTav~~~~~~~~~Q~l~t~~~g~~~~d~~-~v~i~g~~~~--~~lfe-~DG~~Yqt~~Q~~~~afRDP~~f-~ 217 (428)
T PF02435_consen 143 DGSIQLFYTAVGFSDTPTFRQRLATATLGLIHADDD-GVWITGFSNH--HELFE-GDGKHYQTYEQNPGYAFRDPHVF-E 217 (428)
T ss_dssp TSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEECST-EEEEEEEEEE--EEEES---SSSB--HHHHHH---EEEEEE-E
T ss_pred CCeEEEEEeecccCCCcchhhhhhhHhcCeeecCCC-ceeEccccce--eEeec-cchhhhhChhhcCCccccCCeeE-E
Confidence 8999999999542 11222 22 2333332 1123345554 35554 3332 1 2679999994 4
Q ss_pred C-CCCeEEEEEeee---c----------------------C--------CeeEEEEEEeCC--CCCCEEcccccccCCCC
Q 006523 263 G-PDGKWRLTIGSK---I----------------------G--------KTGISLVYQTTD--FKTYELLDEYLHAVPGT 306 (642)
Q Consensus 263 ~-~~g~w~MviGa~---~----------------------~--------~~G~~~lY~S~D--l~~W~~~~~l~~~~~~~ 306 (642)
+ .+|+-||+.-+. . . ..|++-|.+.+| +..|+++++|+.+..-.
T Consensus 218 DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~~~~w~~~~PL~~a~~v~ 297 (428)
T PF02435_consen 218 DPEDGKRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANGAIGIAKLTNDDGTVWELLPPLLSANGVN 297 (428)
T ss_dssp ETTTTEEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EEEEEEEEESTTTTSEEEEEEEEEEETTTB
T ss_pred CCCCCcEEEEEecccCCCCCccccCccccccccccccccccccccccceecceeeeEEecCCCCCccEEeCcceeccccc
Confidence 3 689988887432 0 0 257777777644 56899999999775434
Q ss_pred CceeeeceEEec
Q 006523 307 GMWECVDFYPVA 318 (642)
Q Consensus 307 gmWECPdlf~l~ 318 (642)
...|-|+++.++
T Consensus 298 de~ERP~iv~~~ 309 (428)
T PF02435_consen 298 DELERPHIVFMN 309 (428)
T ss_dssp S-EEEEEEEEET
T ss_pred ccccCCcEEEEC
Confidence 589999999996
No 44
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=98.49 E-value=6.7e-06 Score=85.86 Aligned_cols=210 Identities=16% Similarity=0.308 Sum_probs=129.5
Q ss_pred ccccceeeeecCCCC---ccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCC----CCCccCC
Q 006523 115 TWQRTSFHFQPEKNW---MNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMV----PDQWYDI 187 (642)
Q Consensus 115 ~w~Rp~yHf~P~~gw---mNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~----Pd~~~D~ 187 (642)
+|.-..--.+|..|| +-||. .++++|+||+|-..... . .|+-+-+. |+||+..+-|+. +.. ..
T Consensus 6 ~w~stg~l~~pk~~~~~~lkDPt-iv~~nGkYyvYgT~~~~-~-----~~~s~~~S-f~~Ws~~g~A~q~~l~~~~--~~ 75 (303)
T cd08987 6 RWTSTGPLISPKSDWIVAIKDPT-VVYYNGRYHVYATTADA-G-----NYGSMYFN-FTDWSQAASATQYYLQNGN--MT 75 (303)
T ss_pred eeccCCccccCCCCCeeeecCCe-EEEECCEEEEEEccCCC-C-----Cceeeeec-ccCHhHhccchhhcccCCC--CC
Confidence 344444456788999 78998 77778999999876532 1 24333333 999988876652 221 23
Q ss_pred CCeEeeeEE-EccCCcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCC
Q 006523 188 NGVWTGSAT-ILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDG 266 (642)
Q Consensus 188 ~Gv~SGSav-v~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g 266 (642)
.+.|...++ ..+++++||+|+-. ..+.|++.|..+|. .|... .|++...........-|++|+ . +++
T Consensus 76 ~~fwAPqVfyf~pk~kwYL~Yq~~------~~~yaTs~dp~~P~--~ws~~--qpl~~~~~~~~~~~~ID~~vI-~-Dd~ 143 (303)
T cd08987 76 GYRVAPQVFYFAPQNKWYLIYQWW------PAAYSTNSDISNPN--GWSAP--QPLFSGTPNGSPGGWIDFWVI-C-DDT 143 (303)
T ss_pred cccccCEEeeeccCCEEEEEEecC------ceEEEeCCCCCCCC--ccCCC--cccccCcccCCCCCccceeEE-e-CCC
Confidence 467888875 25789999999941 25789999988774 57764 577653222233456899995 3 578
Q ss_pred eEEEEEeeecCCeeEEEEEEeC-CCCCCEE--cc--cccccCCCCCceeeeceEEecccCccceeeccCCCCeEEEEeee
Q 006523 267 KWRLTIGSKIGKTGISLVYQTT-DFKTYEL--LD--EYLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKAS 341 (642)
Q Consensus 267 ~w~MviGa~~~~~G~~~lY~S~-Dl~~W~~--~~--~l~~~~~~~gmWECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s 341 (642)
+.||.... . .| .||+|+ .+.+..- -. .+..........|-|+.|++.. .-+++|.++
T Consensus 144 ~~YLff~~-d--nG--~iyra~~~~~nFp~~~~~~~~~~~~~~~~~lfEa~~Vykv~G-------------~~~Ylmive 205 (303)
T cd08987 144 NCYLFFSD-D--NG--KLYRSSTTLGNFPNGGTETVIIMSDSNKNNLFEASNVYKVKG-------------QNQYLLIVE 205 (303)
T ss_pred CEEEEEec-C--CC--eEEEEecchhhCCCCCCccEEEecCCCccccceeeEEEEECC-------------CeEEEEEEE
Confidence 88888743 2 34 468763 2222211 00 1111111124789999999962 237888887
Q ss_pred cCCCCceEEEEEEecC--CCCcccCC
Q 006523 342 LDDTKVDHYAIGTYNP--ANDKWTPD 365 (642)
Q Consensus 342 ~~~~~~~~Y~iG~fd~--~~~~f~p~ 365 (642)
..+..+..|+++ |-. -.+.|+|.
T Consensus 206 A~g~~~~rYfrs-~Ts~Sl~GpWt~~ 230 (303)
T cd08987 206 AIGSDGGRYFRS-WTATSLDGPWTPL 230 (303)
T ss_pred ecCCCCCCeEEE-EEcCCCCCCceec
Confidence 766544457877 422 23467764
No 45
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.47 E-value=7.2e-06 Score=86.82 Aligned_cols=108 Identities=26% Similarity=0.418 Sum_probs=74.1
Q ss_pred cCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCccCCCCeEeeeEEEccCCcEEEEEecc
Q 006523 131 NDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLYTGS 210 (642)
Q Consensus 131 NDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~ 210 (642)
-||. +++++|+|+||-... + +..+|+||++|+..+.++. ..++|..++. ..+|++|+.|+..
T Consensus 4 ~DP~-i~~~~g~YY~~~T~~------~----~i~~S~DL~~W~~~g~~~~------~~~~WAP~i~-~~~g~~Y~~~~~~ 65 (295)
T cd08982 4 ADPV-VILFKGEYYLFASMS------G----GYWHSSDLIDWDFIPTNSL------PDEGYAPAVF-VYDGTLYYTASTY 65 (295)
T ss_pred CCCe-EEEECCEEEEEEeCC------C----CeEECCCcCCceECCcccC------CCCcCcCEEE-EECCEEEEEEeCC
Confidence 5998 778899999886542 1 3678999999999987653 4579999986 4789876665532
Q ss_pred CCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeee
Q 006523 211 TDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSK 275 (642)
Q Consensus 211 ~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~ 275 (642)
.+.+|+++|.. .--|+.. .+. ......||.+++ ++||++||+.|..
T Consensus 66 ------~~~v~~s~~p~---gp~w~~~--~~~-------~~~~~IDp~vf~-DdDGk~Yl~~g~~ 111 (295)
T cd08982 66 ------NSRIYKTADPL---SGPWEEV--DKS-------FPPGLADPALFI-DDDGRLYLYYGCS 111 (295)
T ss_pred ------CceEEEeCCCC---CCCcccc--ccc-------cCCCccCCceEE-CCCCCEEEEEecC
Confidence 23578876642 1235542 010 112457999954 5789999999753
No 46
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=98.46 E-value=5e-06 Score=85.16 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=96.2
Q ss_pred CCCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCccCCCCeEeeeEEEccCCcEEEE
Q 006523 127 KNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVML 206 (642)
Q Consensus 127 ~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~ 206 (642)
.+-+-+|. +++++|+|||||+.+..+ ......+.|+|+|+.+|........+ .....++..++++.++||+++|+
T Consensus 56 ~~~~waP~-v~~~~g~yyl~y~~~~~~--~~~~~i~~a~s~d~~g~~~~~~~~~~--~~~~~~~iDp~vf~d~dg~~yl~ 130 (271)
T cd08978 56 SGGLWAPE-VIYYEGKYYLYYSVSDFD--YNGSGIGVATSEDPTGPFEDKVIRPP--TSNNGNSIDPTVFKDDDGKYYLY 130 (271)
T ss_pred CCceeCCe-EEEECCEEEEEEEcccCC--CCcccEEEEECCCCCCCccccccCcC--ccCCCCccCcceEEcCCCCEEEE
Confidence 45567888 889999999999987542 23456899999999998654321111 11244678899988777999999
Q ss_pred EeccCCC-ccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec--CCeeEEE
Q 006523 207 YTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI--GKTGISL 283 (642)
Q Consensus 207 YTG~~~~-~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~--~~~G~~~ 283 (642)
|.+.... ....+.++.+.+. ..|.. ..+++..........+-.|.+ ++ .+|+|||++.+.. ...-.+.
T Consensus 131 ~~~~~~~~~~~~i~~~~l~~~-----~~~~~--~~~~~~~~~~~~~~~~EgP~~-~k-~~g~yyl~ys~~~~~~~~y~~~ 201 (271)
T cd08978 131 YGSGDPGAGFGGIYISELTDD-----LTKPT--GPPVLSASSGNNNAVTEGPTI-FK-KNGYYYLTYSANGTGDYGYNIG 201 (271)
T ss_pred EecccCCCCCCcEEEEEECcc-----ccccc--CCceeeeeeccCCCceEccEE-EE-ECCEEEEEEEeCCCCCCCceEE
Confidence 9876421 1234566666553 22222 233321111111234568988 44 5799999987642 2233566
Q ss_pred EEEeCCCC-CCEEc
Q 006523 284 VYQTTDFK-TYELL 296 (642)
Q Consensus 284 lY~S~Dl~-~W~~~ 296 (642)
+.+|++.. -|+..
T Consensus 202 ~~~s~~~~Gp~~~~ 215 (271)
T cd08978 202 YATSDSIDGPYVKK 215 (271)
T ss_pred EEECCCCCCCcCcC
Confidence 77887763 35543
No 47
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.39 E-value=2.4e-06 Score=89.58 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=56.6
Q ss_pred CCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec-----CCeeEEEEEEeCCCCCCEEcccccccCCCCC-ceee
Q 006523 238 PGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-----GKTGISLVYQTTDFKTYELLDEYLHAVPGTG-MWEC 311 (642)
Q Consensus 238 ~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~-----~~~G~~~lY~S~Dl~~W~~~~~l~~~~~~~g-mWEC 311 (642)
.++|||.+.. +...+|||+|++...+|+|||+..... .....+.+|+|+||++|+..+.++...+..+ +| |
T Consensus 4 ~~~pvl~~~~--g~~~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~~~~~~W-A 80 (276)
T cd08983 4 NGNPVLTSTA--GTKGLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDLVNWTFQRLVKVNPPNAGNTW-A 80 (276)
T ss_pred CCceEEeCCc--CCCCccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcccCCcccceeecCCCCcCcEe-C
Confidence 4689998643 458899999976436899999876532 1122578999999999998877643222333 78 9
Q ss_pred eceEEec
Q 006523 312 VDFYPVA 318 (642)
Q Consensus 312 Pdlf~l~ 318 (642)
|++|..+
T Consensus 81 Pev~~d~ 87 (276)
T cd08983 81 PEAFWDA 87 (276)
T ss_pred ccceEcC
Confidence 9999886
No 48
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=98.38 E-value=9.4e-06 Score=84.60 Aligned_cols=174 Identities=16% Similarity=0.165 Sum_probs=102.9
Q ss_pred cccccccccceeeeecCCCC-----ccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCcc-ceEEcCcc-CC-C
Q 006523 110 TNAMFTWQRTSFHFQPEKNW-----MNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPIA-MV-P 181 (642)
Q Consensus 110 ~~~~~~w~Rp~yHf~P~~gw-----mNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~A-L~-P 181 (642)
|..+..|.+...-+.+...| +..|. +++++|+|||||.-+-.+ ..+...|+|+|+|.. .|+..+.. +. +
T Consensus 37 S~Dl~~W~~~g~~l~~~~~~~~~~~~waP~-v~~~~g~y~~~y~~~~~~--~~~~~i~~a~s~~p~g~~~~~~~~~~~~~ 113 (287)
T cd08999 37 STDLVNWTYLGDAFPKLPRWWTGGDFWAPD-VSYVNGKYVLYYSARDKG--SGGQCIGVATADSPLGPFTDHGKPPLCCP 113 (287)
T ss_pred CCCCCCcEECCcccCCCCCcccCCCccCce-EEEECCEEEEEEEeecCC--CCCEEEEEEECCCCCCCCccCCcceEecC
Confidence 33455676554333333332 33454 778899999999876443 235678999999965 89876532 22 2
Q ss_pred CCccCCCCeEeeeEEEccCCcEEEEEeccCCC--ccceEEEE-EEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCE
Q 006523 182 DQWYDINGVWTGSATILPDGQIVMLYTGSTDK--SVQVQNLA-YPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPT 258 (642)
Q Consensus 182 d~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~--~~q~q~lA-~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~ 258 (642)
. +..+....++++++||+++|+|.+.... ..+.+.++ .+.|+ .+|+.. ...++.+........+--|.
T Consensus 114 ~---~~~~~~Dp~v~~d~dG~~Yl~~~~~~~~~~~~~~i~~~~ls~d~-----~~~~~~-~~~i~~~~~~~~~~~~EgP~ 184 (287)
T cd08999 114 E---GEGGAIDPSFFTDTDGKRYLVWKSDGNSIGKPTPIYLQELSADG-----LTLTGE-PVRLLRNDEDWEGPLVEAPY 184 (287)
T ss_pred C---CCCCccCCCeEECCCCCEEEEEeccCCCCCCCceEEEEEeCCCC-----ccccCC-cEeeecccccccCCceEeeE
Confidence 2 2345677888877799999999764321 11223444 44443 566542 12333322222223455688
Q ss_pred EEEeCCCCeEEEEEeeec--CC--eeEEEEEEeCCCC-CCEEcc
Q 006523 259 TAWAGPDGKWRLTIGSKI--GK--TGISLVYQTTDFK-TYELLD 297 (642)
Q Consensus 259 V~w~~~~g~w~MviGa~~--~~--~G~~~lY~S~Dl~-~W~~~~ 297 (642)
+ ++ .+|+|||++.+.. .. .=.+.+++|+|+. .|+..+
T Consensus 185 i-~k-~~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~Gpw~~~~ 226 (287)
T cd08999 185 L-VK-RGGYYYLFYSAGGCCSGASTYAVGVARSKSLLGPYVKAP 226 (287)
T ss_pred E-EE-ECCEEEEEEEcCCccCCCCCEEEEEEEeCCCcCCcCCCC
Confidence 8 44 5899999997642 11 2246678999976 777643
No 49
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=98.31 E-value=1.8e-05 Score=81.31 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=97.7
Q ss_pred CccCCccceEEC-CEEEEEEeeCCCCCCCCCcEEEEEEecCccc-eEEcC-ccCCCC--CccCCCCeEeeeEEEccCCcE
Q 006523 129 WMNDPNGPLFYK-GWYHLFYQYNPDSAVWGNITWGHAVSADLIH-WLYLP-IAMVPD--QWYDINGVWTGSATILPDGQI 203 (642)
Q Consensus 129 wmNDPnG~~y~~-G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvh-W~~~p-~AL~Pd--~~~D~~Gv~SGSavv~~dG~~ 203 (642)
-+-.|. +++++ |+|+|||..... ..+....+.|+|+|+.. |+... ..+.+. ...+...+..++++.++||++
T Consensus 59 ~~wap~-v~~~~~g~~~l~yt~~~~--~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~ 135 (286)
T cd08772 59 GIWAPS-IVYIENGKFYLYYTDVSF--TKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGKW 135 (286)
T ss_pred cEecce-EEEcCCCCEEEEEEeecC--CCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCCE
Confidence 345666 66777 999999987543 22356789999999876 45432 112222 122344678899987767999
Q ss_pred EEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec----CCe
Q 006523 204 VMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI----GKT 279 (642)
Q Consensus 204 ~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~----~~~ 279 (642)
+|+|.+........+.+|.|+|. .+|++....+++.... ....+--|.++ + .+|+|||++.+.. +..
T Consensus 136 y~~~~~~~~~~~~~i~~~~s~d~-----~~w~~~~~~~~~~~~~--~~~~~E~P~~~-~-~~g~~yL~~s~~~~~~~~~~ 206 (286)
T cd08772 136 YLVFGSGDHHNFGGIFLYESDDD-----TTWKKGSAELLISEGE--GGKQIEGPGLL-K-KNGKYYLFYSINGTGRVDST 206 (286)
T ss_pred EEEEccccCCCCCeEEEEEcCCC-----CCcccccceeeEeecc--CCCceeccEEE-E-ECCEEEEEEEcCCCcCCCCC
Confidence 99998765333456788999885 6888753222222211 22455679984 4 5799999997653 222
Q ss_pred eEEEEEEeCC-CCCCEEc
Q 006523 280 GISLVYQTTD-FKTYELL 296 (642)
Q Consensus 280 G~~~lY~S~D-l~~W~~~ 296 (642)
-.+.+++|++ +-.|+..
T Consensus 207 y~~~~~~~~~~~g~~~~~ 224 (286)
T cd08772 207 YSIGYARSESDTGPYVPK 224 (286)
T ss_pred cceEEEEccCCCCCcccC
Confidence 2455566755 3445443
No 50
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.27 E-value=3e-05 Score=81.34 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=96.3
Q ss_pred cccccccceeeeecCC-----CCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCcc-ceEEcCccCCCCCcc
Q 006523 112 AMFTWQRTSFHFQPEK-----NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPIAMVPDQWY 185 (642)
Q Consensus 112 ~~~~w~Rp~yHf~P~~-----gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~AL~Pd~~~ 185 (642)
.+..|.+...-+.++. ..+-.|. +++.+|+|||||...... ......++|+|+|.. .|+..+..+.+.
T Consensus 32 Dl~~W~~~~~~~~~~~~~~~~~~~waP~-v~~~~g~yyl~ys~~~~~--~~~~~i~~a~s~~p~gp~~~~~~~~~~~--- 105 (294)
T cd08991 32 DLVDWKLHGGALLALDDDWGRRGFWAPE-VYYYNGKFYMYYSANDRD--EKTEHIGVAVSDSPLGPFRDIKKPPIDF--- 105 (294)
T ss_pred CCCCceECCccccCCCCCccCCcEEccE-EEEECCEEEEEEEeccCC--CCcceEEEEEeCCCCCCCCcCCCCcccC---
Confidence 3445554443343322 2334676 888999999999876432 134678999999977 687665333332
Q ss_pred CCCCeEeeeEEEccCCcEEEEEeccCCCc--cceEEEEEEcCCCCCCceeEEEcCC---CceecC-------CCC----C
Q 006523 186 DINGVWTGSATILPDGQIVMLYTGSTDKS--VQVQNLAYPADPSDPLLLDWVKYPG---NPVLVP-------PRH----I 249 (642)
Q Consensus 186 D~~Gv~SGSavv~~dG~~~~~YTG~~~~~--~q~q~lA~S~D~~d~ll~~w~K~~~---nPVl~~-------p~g----~ 249 (642)
......+++++++||+++|+|+...... ...+..+.+.|. .+|..... .|+..+ +.. .
T Consensus 106 -~~~~iD~~vf~d~dG~~yl~~~~~~~~~~~~~i~~~~l~~d~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 179 (294)
T cd08991 106 -EPKSIDAHPFIDDDGKPYLYYSRNNYGNRVSDIYGTELVDDK-----LSIKTELVGPPIPVSAPGIDEIFERWRFGEGK 179 (294)
T ss_pred -CCcccCCceEECCCCCEEEEEEecCCCCcccceEEEEEccce-----eeeccceeeccccccccccccccccccccccc
Confidence 2345678888887899999998754321 123344556553 45542111 122111 000 0
Q ss_pred CCCCCCCCEEEEeCCCCeEEEEEeeec-CCee-EEEEEEeCC-CCCCEEc
Q 006523 250 GPKDFRDPTTAWAGPDGKWRLTIGSKI-GKTG-ISLVYQTTD-FKTYELL 296 (642)
Q Consensus 250 ~~~~fRDP~V~w~~~~g~w~MviGa~~-~~~G-~~~lY~S~D-l~~W~~~ 296 (642)
+..-.--|.+ ++ .+|+|||++.+.. .... .+.+.+|++ +-.|+..
T Consensus 180 ~~~~~EgP~~-~k-~~g~yyl~ys~~~~~~~~y~~~~a~s~~~~gp~~~~ 227 (294)
T cd08991 180 DWRTNEGPTV-LK-HNGRYYLTYSANHYENEDYGVGYATADSPLGPWTKY 227 (294)
T ss_pred cCceeeCcEE-EE-ECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcEec
Confidence 1112335777 34 5799999986532 1111 355567776 4567653
No 51
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=98.21 E-value=3.8e-05 Score=79.97 Aligned_cols=150 Identities=15% Similarity=0.063 Sum_probs=91.1
Q ss_pred CCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCcc-ceEEcCc-cCCCCCccCCCCeEeeeEEEccCCcEEE
Q 006523 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPI-AMVPDQWYDINGVWTGSATILPDGQIVM 205 (642)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~-AL~Pd~~~D~~Gv~SGSavv~~dG~~~~ 205 (642)
+-+--|. +++++|+|||||..... .+....|+|+|+|.. .|+.... .+.+ ...+.......++++++||+++|
T Consensus 62 ~~~wAP~-i~~~~g~yy~yy~~~~~---~~~~~igva~s~~p~Gpw~~~~~~~~~~-~~~~~~~~iDp~vf~d~dG~~yl 136 (274)
T cd08990 62 GQAWAPD-VVEKNGKYYLYFPARDK---DGGFAIGVAVSDSPAGPFKDAGGPILIT-TPSGGWYSIDPAVFIDDDGQAYL 136 (274)
T ss_pred CCcCcCe-EEEECCEEEEEEEeecC---CCceEEEEEEeCCCCCCCCCCCCccccc-cCCCCCCccCCcEEECCCCCEEE
Confidence 3345576 78899999999997643 234678999999976 7987653 3322 22234456788888877899999
Q ss_pred EEeccCCCccceEEEE-EEcCCCCCCceeEEEcCCCceecCCC---CCCCCCCCCCEEEEeCCCCeEEEEEeeecCCeeE
Q 006523 206 LYTGSTDKSVQVQNLA-YPADPSDPLLLDWVKYPGNPVLVPPR---HIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGI 281 (642)
Q Consensus 206 ~YTG~~~~~~q~q~lA-~S~D~~d~ll~~w~K~~~nPVl~~p~---g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~~G~ 281 (642)
+|.+. +...++ .+.| +.+|+.. ..+|..+. .....-+-=|.+ ++ .+|+|||++.+.. ...
T Consensus 137 ~~~~~-----~~~~~~~l~~d-----~~~~~~~--~~~i~~~~~~~~~~~~~~EgP~i-~k-~~G~YYl~yS~~~--~~~ 200 (274)
T cd08990 137 YWGGG-----LGLRVAKLKPD-----MLSLKGE--PVEIVITDGAGDELRRFFEAPWV-HK-RNGTYYLSYSTGD--PEE 200 (274)
T ss_pred EECCc-----CCEEEEEeCcc-----ccccCCC--cEEEEeccccCCCCCCcccceeE-EE-ECCEEEEEEECCC--CcE
Confidence 99864 223444 3334 3566542 22332110 001112235777 44 6899999987642 344
Q ss_pred EEEEEeCCCC-CCEEccc
Q 006523 282 SLVYQTTDFK-TYELLDE 298 (642)
Q Consensus 282 ~~lY~S~Dl~-~W~~~~~ 298 (642)
+.+.+|+++. -|+..+.
T Consensus 201 ~~~a~s~~p~GP~~~~g~ 218 (274)
T cd08990 201 IAYATSDSPLGPFTYRGV 218 (274)
T ss_pred EEEEEcCCCCCCcccCcE
Confidence 5555777764 3554433
No 52
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.19 E-value=1.6e-05 Score=82.86 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=71.1
Q ss_pred CCCCEEEEeCCCCeEEEEEeeecC---------CeeEEEEEEeCCCCCCEEcccccccCC---------------CCCce
Q 006523 254 FRDPTTAWAGPDGKWRLTIGSKIG---------KTGISLVYQTTDFKTYELLDEYLHAVP---------------GTGMW 309 (642)
Q Consensus 254 fRDP~V~w~~~~g~w~MviGa~~~---------~~G~~~lY~S~Dl~~W~~~~~l~~~~~---------------~~gmW 309 (642)
||||+|+ +..+|.|||+..+... ..+.+.+|+|+||++|+..+.++...+ ..++|
T Consensus 2 ~rDP~v~-~~~dg~Yy~~~T~~~~~~~~~~~~~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~W 80 (269)
T cd08986 2 IRDTYVT-LGPDGYYYLTGTTPPPGLPFEDCSIVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYKNAVW 80 (269)
T ss_pred CcCCeEE-ecCCCcEEEEEccCCccccccccccCCCceEEEeCccccCccccCcccccCCcccccccccccCCcccCCcC
Confidence 7999995 4467889888765421 123578999999999999887764321 12366
Q ss_pred eeeceEEecccCccceeeccCCCCeEEEEeeecCCC--CceEEEEEEecCCCCcccCCCCCcccccceeeccCcccceee
Q 006523 310 ECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDT--KVDHYAIGTYNPANDKWTPDNPEEDVGIGLKWDYGRYYASKS 387 (642)
Q Consensus 310 ECPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~~--~~~~Y~iG~fd~~~~~f~p~~~~~D~g~~~~lD~G~fYA~qt 387 (642)
||+++.++ .+++|-.+.... ......+.+=|.-.+.|+..... + .+. .-.-+..
T Consensus 81 -AP~v~~~~---------------g~yyl~~s~~~~~~~~~~i~va~a~~p~Gp~~~~~~~-~-----~~~--~~iD~~~ 136 (269)
T cd08986 81 -APELHYIK---------------GRWYLVACMNNPGYGGSSILLSTSGKIEGPYKHITGN-K-----PLF--PGIDPSL 136 (269)
T ss_pred -CceEEEEC---------------CEEEEEEEccCCCCCceEEEEEeCCCCCCCcEeccCC-C-----CCC--CccCCce
Confidence 99999985 267777665431 12223333323223456532110 0 001 1234677
Q ss_pred EecCCCCcEEEE
Q 006523 388 FYDPYKKRRIVW 399 (642)
Q Consensus 388 f~d~~~gRrIl~ 399 (642)
|.|. +|+..|+
T Consensus 137 f~D~-DG~~Yl~ 147 (269)
T cd08986 137 FEDD-DGKVYLV 147 (269)
T ss_pred EEcC-CCCEEEE
Confidence 8886 6777665
No 53
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=98.14 E-value=2.4e-05 Score=82.28 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=97.4
Q ss_pred CcccccccccceeeeecCCCCccCCcc-----ceEEC-CEEEEEEeeCCCCCCCCCcEEEEEEec-CccceEEcCcc-CC
Q 006523 109 WTNAMFTWQRTSFHFQPEKNWMNDPNG-----PLFYK-GWYHLFYQYNPDSAVWGNITWGHAVSA-DLIHWLYLPIA-MV 180 (642)
Q Consensus 109 ~~~~~~~w~Rp~yHf~P~~gwmNDPnG-----~~y~~-G~YHLFYQ~nP~~~~wG~~~WGHA~S~-DLvhW~~~p~A-L~ 180 (642)
.|..++.|++...=+.|... .|.+| .+.++ |+|+|||.-+......+...-++|+|+ |+++|+..+.. +.
T Consensus 38 ~S~Dlv~W~~~~~al~p~~~--~d~~g~~sGsav~~~~g~~~~~YTg~~~~~~~~~~~~~lA~S~ddg~~w~k~~~~~~~ 115 (298)
T cd08996 38 TSKDLVHWEHLPVALAPDDP--YDSGGCFSGSAVVDDNGKLVLFYTGNVKLDGGRRQTQCLAYSTDDGRTFTKYEGNPVI 115 (298)
T ss_pred EecCccceeECCcccCCCCc--ccCCeEEeCeEEEcCCCcEEEEEeceeCCCCCceEEEEEEEEcCCCCEEEECCCCceE
Confidence 34556778765533444322 23333 34456 999999986543211234668899999 89999987622 22
Q ss_pred CCCccCCCCeEeeeEEEccCCcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEE
Q 006523 181 PDQWYDINGVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTA 260 (642)
Q Consensus 181 Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~ 260 (642)
+....+..+.-...++. .+|+++|+|++...+......++.|.|+ ++|++. .++.... +.....+--|.++
T Consensus 116 ~~~~~~~~~~RDP~V~~-~~g~~~m~~g~~~~~~~~~i~ly~S~Dl-----~~W~~~--~~~~~~~-~~~~~~~EcP~l~ 186 (298)
T cd08996 116 PPPDGYTTHFRDPKVFW-HDGKWYMVLGAGTEDGTGRILLYRSDDL-----KNWEYL--GELLTSL-GDFGYMWECPDLF 186 (298)
T ss_pred cCCCCCCCcccCCeEEe-ECCEEEEEEEEEecCCCcEEEEEECCCC-----CCCEEc--ceecccC-CCccceEeCCcEE
Confidence 11223345667888865 5699999999876544456788999884 899985 3443211 1122345678883
Q ss_pred EeCCC--CeEEEEEeee
Q 006523 261 WAGPD--GKWRLTIGSK 275 (642)
Q Consensus 261 w~~~~--g~w~MviGa~ 275 (642)
+ -+ ++|+|+++..
T Consensus 187 -~-l~~~~k~vL~~s~~ 201 (298)
T cd08996 187 -P-LDVEGKWVLIFSPQ 201 (298)
T ss_pred -E-ECCCCeEEEEECCC
Confidence 3 46 9999999865
No 54
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=98.14 E-value=9.5e-06 Score=86.65 Aligned_cols=106 Identities=22% Similarity=0.277 Sum_probs=79.8
Q ss_pred CCCeEeeeEEEccCCc--EEEEEeccCCCccc-eEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeC
Q 006523 187 INGVWTGSATILPDGQ--IVMLYTGSTDKSVQ-VQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAG 263 (642)
Q Consensus 187 ~~Gv~SGSavv~~dG~--~~~~YTG~~~~~~q-~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~ 263 (642)
...||-..|++ .+|+ ++|+|.+....... .+++|.|.|+ ++|++. .+||+.|...++....-||-|..
T Consensus 29 ~~~vfNpgai~-~~~~~R~~l~yr~~~~~~~~~~iglA~S~DG-----i~f~~~-~~pil~P~~~~e~~GvEDPRVt~-- 99 (312)
T PF04041_consen 29 PNAVFNPGAIV-FDGGLRVYLLYRAYGSDIGSSRIGLARSDDG-----IHFERD-PEPILYPDTDYEEWGVEDPRVTK-- 99 (312)
T ss_dssp SSEEEEEEEEE-ETTE--EEEEEEEEESSSSEEEEEEEEESSS-----SS-EE--SS-SBEE-SSTTHTEEEEEEEEE--
T ss_pred cceEEcCcEEE-ECCeeEEEEEEEeECCCCceeEEEEEEccCC-----cCceEC-CCCEEccCCCCcccCccceeEEE--
Confidence 46799999975 4554 89999887654444 7899999996 799886 58999875555556678999975
Q ss_pred CCCeEEEEEeeecCCeeEEEEEEeCCCCCCEEcccccc
Q 006523 264 PDGKWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLH 301 (642)
Q Consensus 264 ~~g~w~MviGa~~~~~G~~~lY~S~Dl~~W~~~~~l~~ 301 (642)
.+++|+|++.+.......+.+.+|+||.+|+..+..+.
T Consensus 100 i~d~yymtYta~~~~~~~~~la~s~D~~~~~r~g~~~~ 137 (312)
T PF04041_consen 100 IDDTYYMTYTAYSGKGPRIGLATSKDFKHWERHGKIFP 137 (312)
T ss_dssp ETTEEEEEEEEEESSSEEEEEEEESSSSSEEEEECTTT
T ss_pred ECCEEEEEEEEecCCCcccceEEccchHhhEEeccccC
Confidence 46899999988755555677889999999999987654
No 55
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=98.09 E-value=0.00012 Score=76.72 Aligned_cols=148 Identities=17% Similarity=0.150 Sum_probs=87.7
Q ss_pred ccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCc--cceEEcCccCCCCCccCCCCeEeeeEEEccCCcEEEEE
Q 006523 130 MNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADL--IHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLY 207 (642)
Q Consensus 130 mNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DL--vhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~Y 207 (642)
+-.|. +++.+|+|||||..+..+. +....++|+|+|+ -.|+..++.+.+...+....+..+++++++||+++|+|
T Consensus 58 ~wAP~-v~~~~g~yyl~ys~~~~~~--~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~~ 134 (288)
T cd08998 58 LWAPD-VIYLNGKYYLYYSVSTFGS--NRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLSF 134 (288)
T ss_pred ccCCe-EEEECCEEEEEEEEEeCCC--CceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEEe
Confidence 44565 7788999999998764321 2456899999998 78998775555543323445778899887799999999
Q ss_pred eccCCCccceEEEEE-EcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec-C---Cee-E
Q 006523 208 TGSTDKSVQVQNLAY-PADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-G---KTG-I 281 (642)
Q Consensus 208 TG~~~~~~q~q~lA~-S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~-~---~~G-~ 281 (642)
..... .+.++. +.|.+.+ ..+... ...++..+.. ..-.-.|++ ++ .+|+|||++.+.. . ..+ +
T Consensus 135 ~~~~~----~i~~~~l~~~~~~~--~~~~~~-~~~i~~~~~~--~~~~Egp~~-~k-~~g~YYl~~S~~~~~~~~~~~y~ 203 (288)
T cd08998 135 GSFWG----GIFLVELDPKTGKP--LYPGGY-GYNIAGRPRG--HGAIEAPYI-IY-RGGYYYLFVSYGGCCAGEDSTYN 203 (288)
T ss_pred eeccC----CEEEEEeCcccCCc--cCCCCc-ceEEeccCCC--CCceeeeEE-EE-eCCEEEEEEEcchhcCCCCCceE
Confidence 75421 123332 2232221 122110 0112222111 122347888 44 6899999986431 1 112 4
Q ss_pred EEEEEeCCCC
Q 006523 282 SLVYQTTDFK 291 (642)
Q Consensus 282 ~~lY~S~Dl~ 291 (642)
+.+++|+++.
T Consensus 204 v~~~~s~~~~ 213 (288)
T cd08998 204 IRVGRSKSIT 213 (288)
T ss_pred EEEEEcCCCC
Confidence 6688898753
No 56
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=97.90 E-value=0.00016 Score=74.98 Aligned_cols=171 Identities=13% Similarity=0.140 Sum_probs=101.1
Q ss_pred cccccccccceeeeecCCCCccC-------CccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCcc-ceEEcCccCCC
Q 006523 110 TNAMFTWQRTSFHFQPEKNWMND-------PNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPIAMVP 181 (642)
Q Consensus 110 ~~~~~~w~Rp~yHf~P~~gwmND-------PnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~AL~P 181 (642)
|..|..|......+.+...+... |. +++++|+|||||+..... .....+.|+|++.. .|+.......+
T Consensus 40 S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~-i~~~~g~yy~y~~~~~~~---~~~~~~va~a~~~~Gp~~~~~~~~~~ 115 (286)
T PF04616_consen 40 SKDLVNWTDAGNVLPPPPDWDWANNGNIWAPE-IHYINGKYYMYYSDSGGD---AGSGIGVATADSPDGPWTDPGKIPIP 115 (286)
T ss_dssp ESSSSSEEEEEECESSTTTTSTTTSETTEEEE-EEEETTEEEEEEEEESTS---TTEEEEEEEESSTTS-EEEEEEEEEE
T ss_pred CCCCcccccceeeecccccccccccccccCCe-EEEcCCeEEEEEEccCCC---CCcceeEEEeCCcccccccccceeec
Confidence 44567788777777665544422 32 677899999999922211 23458899999986 89877643322
Q ss_pred CCccCCCCeEeeeEEEccCCcEEEEEeccCCC-ccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEE
Q 006523 182 DQWYDINGVWTGSATILPDGQIVMLYTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTA 260 (642)
Q Consensus 182 d~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~-~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~ 260 (642)
...+..+++++++||+.+|+|.+.... ..+.+.++...+.. .++.......+..........-.--|++
T Consensus 116 -----~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~~~i~~~~l~~d~----~~~~~~~~~~~~~~~~~~~~~~~Egp~~- 185 (286)
T PF04616_consen 116 -----GGNSIDPSVFVDDDGKYYLYYGSWDNGDPGGGIYIAELDPDG----TSLTGEPVVVIFPGDEGWDGGVVEGPFV- 185 (286)
T ss_dssp -----SSSSSSEEEEEETTSEEEEEEEESTTTSSEEEEEEEEEETTT----SSEEEEECEEEEEESGSSTTTBEEEEEE-
T ss_pred -----cccccCceEEEecCCCcEEeCcccCCCccceeEEeecccCcc----ccccCcccccccccccccCCccccceEE-
Confidence 335667888888789999999987543 23444555443321 3444321122222111111122334777
Q ss_pred EeCCCCeEEEEEeeec-CCeeEEEEEEeCCCCC-CEE
Q 006523 261 WAGPDGKWRLTIGSKI-GKTGISLVYQTTDFKT-YEL 295 (642)
Q Consensus 261 w~~~~g~w~MviGa~~-~~~G~~~lY~S~Dl~~-W~~ 295 (642)
++ .+|+|||++.+.. ...-.+.+++|+|+.. |+.
T Consensus 186 ~k-~~g~yYl~~s~~~~~~~y~v~~~~s~~~~gp~~~ 221 (286)
T PF04616_consen 186 FK-HGGKYYLFYSAGGTGSPYQVGYARSDSPLGPWEW 221 (286)
T ss_dssp EE-ETTEEEEEEEESGSSTTTEEEEEEESSTTSGGEE
T ss_pred EE-cCCCEEEEEeccCCCCCceEEEeeccCCCCceee
Confidence 44 6899999987642 2123466789999865 444
No 57
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=97.83 E-value=0.00023 Score=74.29 Aligned_cols=121 Identities=17% Similarity=0.248 Sum_probs=73.4
Q ss_pred CceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCCeeEEEEEEeCCCCCCEEcccccccC---------CCCCcee
Q 006523 240 NPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLHAV---------PGTGMWE 310 (642)
Q Consensus 240 nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~~G~~~lY~S~Dl~~W~~~~~l~~~~---------~~~gmWE 310 (642)
||||. .++.||.|+. .++.|||+.+......| +.+|+|+||.+|+..+..+... ...++|
T Consensus 1 NPvi~-------~~~~DP~ii~--~~~~yY~~~t~~~~~~g-~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~W- 69 (269)
T cd08989 1 NPILK-------GDNPDPSIIR--AGDDYYMASSTFEWFPG-VQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPYSGGIW- 69 (269)
T ss_pred CCcCC-------CCCCCCcEEE--ECCeEEEEECccccCCC-cEEEECCccCCCEEccccccCccccccccCCCCCcEE-
Confidence 68874 3578999953 57899999765322223 6789999999999988765421 123588
Q ss_pred eeceEEecccCccceeeccCCCCeEEEEeeecCCC---CceEEEEEEecCCCCcccCCCCCcccccceeeccCcccceee
Q 006523 311 CVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDT---KVDHYAIGTYNPANDKWTPDNPEEDVGIGLKWDYGRYYASKS 387 (642)
Q Consensus 311 CPdlf~l~~~g~~~l~~s~~g~~~k~vl~~s~~~~---~~~~Y~iG~fd~~~~~f~p~~~~~D~g~~~~lD~G~fYA~qt 387 (642)
||+++..+ .||+|-.+.... ...+.++. |...+.|+. + ...+. .-.=+..
T Consensus 70 AP~v~~~~---------------G~yy~yy~~~~~~~~~~i~va~s--d~~~Gpw~~--~-------~~~~~-~~IDp~~ 122 (269)
T cd08989 70 APCLSYYD---------------GKFWLIYTAVKVWKDCHNYLFTA--EDITGPWSR--P-------IFLNY-GGFDPSL 122 (269)
T ss_pred cceEEEEC---------------CEEEEEEeccccCCCceEEEEEE--CCCCCCCcC--C-------EECCC-CcccCce
Confidence 99999884 267777665422 12223333 222345642 1 01111 1122566
Q ss_pred EecCCCCcEEEE
Q 006523 388 FYDPYKKRRIVW 399 (642)
Q Consensus 388 f~d~~~gRrIl~ 399 (642)
|.|. +|+..|+
T Consensus 123 f~D~-dG~~Yl~ 133 (269)
T cd08989 123 FHDD-DGKKYLI 133 (269)
T ss_pred EEcC-CCCEEEE
Confidence 7775 6888776
No 58
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=97.75 E-value=0.0004 Score=72.95 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=55.3
Q ss_pred CCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCCeeEEEEEEeCCCCCCEEcccccccCCCCCceeeeceEEec
Q 006523 239 GNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLHAVPGTGMWECVDFYPVA 318 (642)
Q Consensus 239 ~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~~G~~~lY~S~Dl~~W~~~~~l~~~~~~~gmWECPdlf~l~ 318 (642)
.||||. .++.||.|++ .+++|||+.++.. ..+.+.+|+|+||.+|+..+..+... ..++| +|+++..+
T Consensus 7 ~nPv~~-------~~~~DP~i~~--~~~~yY~~~t~~~-~~~gi~i~~S~DL~~W~~~g~~~~~~-~~~~W-AP~i~~~~ 74 (280)
T cd09002 7 RNPILA-------GDYPDPSILR--DGEDYYMTHSSFK-YTPGLVIWHSRDLVNWTPVGPALPEY-EGDVW-APDLCKYD 74 (280)
T ss_pred eCCccC-------CCCCCCEEEE--ECCEEEEEEcchh-cCCCEEEEECCCcCCceEccccccCC-CCCEE-cCeeEEEC
Confidence 389985 2468999954 4789999765322 22347799999999999988765432 23589 89998874
Q ss_pred ccCccceeeccCCCCeEEEEeeecC
Q 006523 319 INGSVGLDTSATGPGIKHVLKASLD 343 (642)
Q Consensus 319 ~~g~~~l~~s~~g~~~k~vl~~s~~ 343 (642)
.|++|-.+..
T Consensus 75 ---------------gkyy~yys~~ 84 (280)
T cd09002 75 ---------------GRYYIYFPAI 84 (280)
T ss_pred ---------------CEEEEEEEee
Confidence 2677776654
No 59
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=97.75 E-value=0.00031 Score=78.59 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=91.3
Q ss_pred cccccccccceeeeecCCCC----ccCCccceEECCEEEEEEeeCCCCCCCC-CcEEEEEEecCccceEEcC-ccCCCCC
Q 006523 110 TNAMFTWQRTSFHFQPEKNW----MNDPNGPLFYKGWYHLFYQYNPDSAVWG-NITWGHAVSADLIHWLYLP-IAMVPDQ 183 (642)
Q Consensus 110 ~~~~~~w~Rp~yHf~P~~gw----mNDPnG~~y~~G~YHLFYQ~nP~~~~wG-~~~WGHA~S~DLvhW~~~p-~AL~Pd~ 183 (642)
|..+..|++-.-=+.|..-| +-.++ .+..+|++||||.-+.....+. ...-++|+|+|+.+|+..+ +.|.+..
T Consensus 62 S~Dlv~W~~~~~al~P~~~~d~~G~~sGs-av~~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~Dg~~~~k~~~pvi~~~~ 140 (445)
T TIGR01322 62 SKDLVHWEDEGVALAPDDPYDSHGCYSGS-AVDNNGQLTLMYTGNVRDSDWNRESYQCLATMDDDGHFEKFGIVVIELPP 140 (445)
T ss_pred CCCccccEECCccCcCCCcccCCceEECe-EEeeCCEEEEEEeccccCCCCCeeEEEEEEEcCCCCeEEECCCceEeCCC
Confidence 44567786644344454322 11333 3457899999999764322222 2334689999999998876 4554432
Q ss_pred ccCCCCeEeeeEEEccCCcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCC---CCCCCCCCCCEEE
Q 006523 184 WYDINGVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPR---HIGPKDFRDPTTA 260 (642)
Q Consensus 184 ~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~---g~~~~~fRDP~V~ 260 (642)
.....+.-...++ ..+|+++|+|.+..........+..|+| |++|+.. .++..+.. +.....+--|-+
T Consensus 141 ~~~~~~fRDP~V~-~~~g~~~M~~g~~~~~~~g~i~ly~S~D-----l~~W~~~--g~~~~~~~~~~~~~g~~~ECPdl- 211 (445)
T TIGR01322 141 AGYTAHFRDPKVW-KHNGHWYMVIGAQTETEKGSILLYRSKD-----LKNWTFV--GEILGDGQNGLDDRGYMWECPDL- 211 (445)
T ss_pred CCCcCcCCCCcEE-eECCEEEEEEEEecCCCceEEEEEECCC-----cccCeEe--cccccccccccCCccceEECCeE-
Confidence 2112234456664 4689999999876433223446777777 4899986 35543321 111123456776
Q ss_pred EeCCCCeEEEEEeee
Q 006523 261 WAGPDGKWRLTIGSK 275 (642)
Q Consensus 261 w~~~~g~w~MviGa~ 275 (642)
+. -+|+|+|+++..
T Consensus 212 f~-l~~k~vL~~s~~ 225 (445)
T TIGR01322 212 FS-LDGQDVLLFSPQ 225 (445)
T ss_pred EE-ECCcEEEEEecc
Confidence 33 578999998754
No 60
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=97.65 E-value=0.00064 Score=71.91 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=53.5
Q ss_pred CCCCCCEEEEeCCCCeEEEEEeeecCC----eeEEEEEEeCCCCCCEEcccccccCC---CCCceeeeceEEecccCccc
Q 006523 252 KDFRDPTTAWAGPDGKWRLTIGSKIGK----TGISLVYQTTDFKTYELLDEYLHAVP---GTGMWECVDFYPVAINGSVG 324 (642)
Q Consensus 252 ~~fRDP~V~w~~~~g~w~MviGa~~~~----~G~~~lY~S~Dl~~W~~~~~l~~~~~---~~gmWECPdlf~l~~~g~~~ 324 (642)
..+|||+|++...+|+|||+..+.... ...+-+|+|+||.+|+..+.++.... ......+|+++..+
T Consensus 4 ~~~~DP~v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~~~~~~WAP~v~~~~------ 77 (291)
T cd08981 4 IRIRDPFILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFWADDNFWAPEVHEYK------ 77 (291)
T ss_pred ccccCCEEEEECCCCEEEEEEecCccccccCCCcEEEEECCChhcccccceeeccCCCcCccccccCCeeeeeC------
Confidence 458999997654589999998764211 12367999999999999887764322 12234589998774
Q ss_pred eeeccCCCCeEEEEeeecCC
Q 006523 325 LDTSATGPGIKHVLKASLDD 344 (642)
Q Consensus 325 l~~s~~g~~~k~vl~~s~~~ 344 (642)
.+++|-.+...
T Consensus 78 ---------G~yyly~s~~~ 88 (291)
T cd08981 78 ---------GRYYMFATFHN 88 (291)
T ss_pred ---------CEEEEEEEecc
Confidence 26777766543
No 61
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=97.58 E-value=0.0013 Score=71.24 Aligned_cols=173 Identities=16% Similarity=0.160 Sum_probs=101.1
Q ss_pred cCcccccccccceeeeecCCCCcc-----CCccceEECCEEEEEEeeCCCCC---CCCCcEEEEEEecCccceE----Ec
Q 006523 108 NWTNAMFTWQRTSFHFQPEKNWMN-----DPNGPLFYKGWYHLFYQYNPDSA---VWGNITWGHAVSADLIHWL----YL 175 (642)
Q Consensus 108 ~~~~~~~~w~Rp~yHf~P~~gwmN-----DPnG~~y~~G~YHLFYQ~nP~~~---~wG~~~WGHA~S~DLvhW~----~~ 175 (642)
-.+..+..|.+ .-++.|+ +|.- -+..++..+|+|||||.-+-... .--.+..++++++|+..|. .+
T Consensus 46 ~~S~dlv~W~~-~~~l~p~-~~~d~~g~wSGsa~~~~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~~~~~~v~~~~~~~~ 123 (349)
T cd08997 46 FYSRAGGNWID-GGKVFPD-GLSPGSREWSGSATLDDDGTVQLFYTAVGRKGEPQPTFTQRLALARGTLSVVNLSGFEDH 123 (349)
T ss_pred EEeCCCCcccC-CCccCCC-CcccCCCeEcceEEEeCCCeEEEEEeccccCCCCCCCceEEEEEEECCCcceEecccCcc
Confidence 33455666765 3355554 3321 12223334599999999763211 1123678999999985553 33
Q ss_pred CccCCCCC-ccCC-------------CCeEeeeEEEcc-CCcEEEEEeccCCCc--------------------------
Q 006523 176 PIAMVPDQ-WYDI-------------NGVWTGSATILP-DGQIVMLYTGSTDKS-------------------------- 214 (642)
Q Consensus 176 p~AL~Pd~-~~D~-------------~Gv~SGSavv~~-dG~~~~~YTG~~~~~-------------------------- 214 (642)
...+.++. .|+. ...-..-++.++ +|+.+|++++++...
T Consensus 124 ~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~~G~~ymvfeant~~~~g~~~~~~~~~~~~~~~~~~~~~a~~ 203 (349)
T cd08997 124 HELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPETGKTYLLFEGNTAGERGSQECTEAELGRVLPDTVKPDGASY 203 (349)
T ss_pred ceeeeCCCceEEeccccccccccCccCcccCCEEEecCCCCcEEEEEEeccCCCCCcccccccccccccccccccccccc
Confidence 33445554 3321 123355666554 599999999987421
Q ss_pred -cceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecC-------CeeEEEEEE
Q 006523 215 -VQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIG-------KTGISLVYQ 286 (642)
Q Consensus 215 -~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~-------~~G~~~lY~ 286 (642)
.-.+++|.+.+. . |.+|+-+ .|++.+. +. ...+-.|.++ + .+|+|||+..++.. ....+..|.
T Consensus 204 ~~G~IGia~~~s~--d-l~~W~~~--~PL~~a~-~v-~d~~E~P~v~-~-~~gk~yL~~s~~~~~~~~~~~~~~~~~g~v 274 (349)
T cd08997 204 QNGNVGIAVAKND--D-LTEWKLL--PPLLEAN-GV-NDELERPHVV-F-HNGKYYLFTISHRSTFAPGLSGPDGLYGFV 274 (349)
T ss_pred ccceEEEEEecCC--C-CCCcEEc--CccccCC-Cc-CCceEcceEE-E-ECCEEEEEEeCCcCccccccCCCCcEEEEE
Confidence 124567766542 1 4789876 5787643 22 2346799994 4 69999999775421 112356678
Q ss_pred eCCCC
Q 006523 287 TTDFK 291 (642)
Q Consensus 287 S~Dl~ 291 (642)
|++|.
T Consensus 275 sdsl~ 279 (349)
T cd08997 275 SDSLR 279 (349)
T ss_pred eCCCC
Confidence 88874
No 62
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=97.48 E-value=0.0023 Score=67.12 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=83.3
Q ss_pred cCCCCccCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCcc-CCCCCccCCC--CeEeeeEEEccCC
Q 006523 125 PEKNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIA-MVPDQWYDIN--GVWTGSATILPDG 201 (642)
Q Consensus 125 P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~A-L~Pd~~~D~~--Gv~SGSavv~~dG 201 (642)
+...+..||+ ++.++|+++|||...-.....+.--|..-.+ |...+...+.. ..|...|+.. ++.-|..++..+|
T Consensus 108 ~~~~~~iDp~-~~~ddG~~Yl~~~~~~~~~~~~~~i~~~~l~-~~~~~~g~~~~i~~p~~~we~~~~~~~EgP~~~k~~G 185 (288)
T cd08980 108 PTDRWAIDGT-VFEHNGQLYFVWSGWEGRTNGNQNLYIAKMS-NPWTLTGPRVLISRPEYDWERQGPGVNEGPAALKRNG 185 (288)
T ss_pred CCCCeeeeeE-EEEECCEEEEEEEccCCCCCCCccEEEEECC-CCCccCCcceEecCCCCCceecCceeeECcEEEEECC
Confidence 4456778997 6667899989886422111111122333333 33344433322 3455555554 4677888888899
Q ss_pred cEEEEEeccCC-CccceEEEEEEcCCCCCCc-eeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCe-EEEEEee
Q 006523 202 QIVMLYTGSTD-KSVQVQNLAYPADPSDPLL-LDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGK-WRLTIGS 274 (642)
Q Consensus 202 ~~~~~YTG~~~-~~~q~q~lA~S~D~~d~ll-~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~-w~MviGa 274 (642)
.++|+|.+... .....+++|+++...+++. ..|+|. .+|||.....-....--...+ ....+|+ |+|++=+
T Consensus 186 ~yYl~yS~~~~~~~~Y~v~~a~~~~~~~~~~~~~~~~~-~~pil~~~~~~~~~g~GH~~i-v~~~~G~~~~~~yH~ 259 (288)
T cd08980 186 KVFLTYSASGSWTPDYCLGLLTADGGADLLDPASWTKS-PTPVFQSSPENGVYGPGHNSF-TKSPDGTEDWIVYHA 259 (288)
T ss_pred EEEEEEECCCCCCCCCEEEEEEEcCCCCCCChhhCcCC-CCCceecCCCCccCcCCccce-EECCCCCEEEEEEcc
Confidence 99999997653 3344567888765433332 258886 479887543100111123445 3456787 8888744
No 63
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=97.48 E-value=0.0038 Score=65.47 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=79.4
Q ss_pred CCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCcc------ceEEcCccCCCCCccCCCCeEeeeEEEccCCcEEE
Q 006523 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI------HWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVM 205 (642)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv------hW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~ 205 (642)
-|. +.+++|+|||||.....+. .....|.|+|++.. .|+...+.+.++.. +..+...+++++++||+.+|
T Consensus 59 AP~-v~~~~G~yylyys~~~~~~--~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~-~~~~~iDp~~f~DdDG~~Yl 134 (279)
T cd08988 59 APD-IYQHNGKFYLYYSVSAFGS--NTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDAS-DNYNAIDPAIIFDQHGQPWL 134 (279)
T ss_pred cce-EEEECCEEEEEEEeccCCC--CCceEEEEEcCCCCCCCcCcCccccCceEecCCC-CCCCccCCceEEcCCCCEEE
Confidence 344 6788999999998765432 23568999999853 25543333333322 12345788999888999999
Q ss_pred EEeccCCCccceEEEEEEcCCCCCCceeEEEc-CCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec-----CCe
Q 006523 206 LYTGSTDKSVQVQNLAYPADPSDPLLLDWVKY-PGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-----GKT 279 (642)
Q Consensus 206 ~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~-~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~-----~~~ 279 (642)
+|..... . .+..-.+.|... .... ....++..+. .....--|++ ++ .+|+|||+..+.. +..
T Consensus 135 ~~g~~~~-g--i~~~eL~~d~~~-----~~~~~~~~~i~~~~~--~~~~~Egp~i-~k-~~g~YYl~~S~g~~~~~~~~~ 202 (279)
T cd08988 135 SFGSFWG-G--IKLFELDKDTMK-----PAEPGELHSIAGRER--SSAAIEAPFI-LY-RGDYYYLFVSFGLCCRGGDST 202 (279)
T ss_pred EecccCC-C--EEEEEECcccCC-----ccCCCcceEEeccCC--CCCceEeeEE-EE-cCCeEEEEEEcCcccCCCCCC
Confidence 9964311 1 122223333221 1000 0011222111 1122346777 55 6899999876431 122
Q ss_pred eEEEEEEeCCC
Q 006523 280 GISLVYQTTDF 290 (642)
Q Consensus 280 G~~~lY~S~Dl 290 (642)
-.+.+++|+++
T Consensus 203 y~v~~arS~~~ 213 (279)
T cd08988 203 YKIAVGRSKNI 213 (279)
T ss_pred eEEEEEEeCCC
Confidence 35777889876
No 64
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=97.45 E-value=0.001 Score=74.33 Aligned_cols=155 Identities=16% Similarity=0.199 Sum_probs=91.0
Q ss_pred cccccccccceeeeecCCCCccCCcc-----ceEECCEEEEEEeeCC-CCC--CCCCcE-EEEEEecCccceEEcC--cc
Q 006523 110 TNAMFTWQRTSFHFQPEKNWMNDPNG-----PLFYKGWYHLFYQYNP-DSA--VWGNIT-WGHAVSADLIHWLYLP--IA 178 (642)
Q Consensus 110 ~~~~~~w~Rp~yHf~P~~gwmNDPnG-----~~y~~G~YHLFYQ~nP-~~~--~wG~~~-WGHA~S~DLvhW~~~p--~A 178 (642)
|..++.|++..-=+.|.. + .|.+| .+.++|.||+||.-+- ... ..+... -.+|+|+|+++|+..+ +.
T Consensus 45 S~Dlv~W~~~~~aL~P~~-~-~d~~g~~sGsav~~~~~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~Pv 122 (437)
T smart00640 45 SKDLVHWTHLPVALAPDE-W-YDSNGVFSGSAVIDPGNLSLLYTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNPV 122 (437)
T ss_pred cCCcceeeecCcccCCCC-c-CCCCcEEEEEEEECCCceEEEEcCCcccccccCcccEEEEEEEECCCCCeeEECCCCcE
Confidence 445677865433355554 2 35555 3445788999998652 111 122222 3678899999999873 55
Q ss_pred CCCCCccCCCCeEeeeEEEccCCcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCE
Q 006523 179 MVPDQWYDINGVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPT 258 (642)
Q Consensus 179 L~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~ 258 (642)
|.+...+.....-...++..++|+++|++.+...+..-.+.++.|+|+ ++|+.. .+++.++.+.....|--|-
T Consensus 123 i~~~p~~~~~~fRDP~Vf~~~~~~~~m~~g~~~~~~~G~i~ly~S~Dl-----~~W~~~--~~~~~~~~~~~g~~wECPd 195 (437)
T smart00640 123 LVPPPGIGTEHFRDPKVFWYDGDKWYMVIGASDEDKTGIALLYRSTDL-----KNWTLL--GELLHSGVGDTGGMWECPD 195 (437)
T ss_pred EeCCCCCCCCCcCCCCccEECCCEEEEEEEEEecCCCeEEEEEECCCc-----ccCeEC--CcccccCCCCccceEECCc
Confidence 554332323334456665444468999998765444455778888874 899886 3554431111113455676
Q ss_pred EEEeCCCC-----eEEEEEeee
Q 006523 259 TAWAGPDG-----KWRLTIGSK 275 (642)
Q Consensus 259 V~w~~~~g-----~w~MviGa~ 275 (642)
.+ . -++ +|+|+++..
T Consensus 196 lf-~-l~~~~~~~~~vLi~s~~ 215 (437)
T smart00640 196 LF-P-LPGDGDTSKHVLKVSPQ 215 (437)
T ss_pred EE-E-eCCCCCceeEEEEECcC
Confidence 63 2 334 899998765
No 65
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.00048 Score=72.17 Aligned_cols=117 Identities=16% Similarity=0.244 Sum_probs=86.0
Q ss_pred ccCCCCCc--cCCC----CeEeeeEEEccCCcEEEEEeccC-----CCccceEEEEEEcCCCCCCcee-EEEcCCCceec
Q 006523 177 IAMVPDQW--YDIN----GVWTGSATILPDGQIVMLYTGST-----DKSVQVQNLAYPADPSDPLLLD-WVKYPGNPVLV 244 (642)
Q Consensus 177 ~AL~Pd~~--~D~~----Gv~SGSavv~~dG~~~~~YTG~~-----~~~~q~q~lA~S~D~~d~ll~~-w~K~~~nPVl~ 244 (642)
+.+.|... ++.. .+|-++++. .++++.|+|-... ........+|.|+|+ .+ |++. .+|++.
T Consensus 12 pIi~~~~~~~~~~~~~~~~vFNpav~~-~~~~~~~l~Rv~~~yye~~~~~s~l~ia~s~dg-----i~~~~~e-~ep~~~ 84 (314)
T COG2152 12 PIITRSDYIPPHARFIVVSVFNPAVVL-VGGELLLLYRVVEGYYEDHSSISHLRIARSDDG-----IGEFEIE-PEPTLW 84 (314)
T ss_pred CceeeccccCCCCceeEEEEecceeEE-ECCEEEEEEEEeccccccCccceEEEEEecccC-----CCceecC-CcceEe
Confidence 34455443 4555 789998864 6899999998732 224567789999987 45 9986 489998
Q ss_pred C-CCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCCeeEEEEEEeCCCCCCEEccccccc
Q 006523 245 P-PRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLHA 302 (642)
Q Consensus 245 ~-p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~~G~~~lY~S~Dl~~W~~~~~l~~~ 302 (642)
| ...++....-||-|. + .+|+|+|.+.+..+..-+..+..++|+.+|++.+.++.+
T Consensus 85 P~~~~~e~~G~EDPRvt-~-I~~~y~mtYTa~s~~g~~~~la~t~~f~n~~rig~i~~p 141 (314)
T COG2152 85 PANYPYEIYGIEDPRVT-K-IGGRYYMTYTAYSDKGPRLALAVTKDFLNWERIGAIFPP 141 (314)
T ss_pred cCCCchhhhcccCceEE-E-ECCEEEEEEEecCCCCcccchhhhhhhhhhhhcccccCC
Confidence 7 333455667899995 3 689999999987555445778889999999999887643
No 66
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=97.39 E-value=0.0041 Score=64.69 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=80.5
Q ss_pred CCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCcc-ceEE-cC-ccCCCCCccCCCCeEeeeEEEccCCcEEEEEe
Q 006523 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLY-LP-IAMVPDQWYDINGVWTGSATILPDGQIVMLYT 208 (642)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~-~p-~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YT 208 (642)
=|. +++++|+|+|||..+ ...++|+|+|.. .|+. .+ +.+.+.. .......+++++++||+.+|+|.
T Consensus 68 AP~-v~~~~g~yy~yys~~--------~~i~va~s~~p~gp~~~~~~~p~~~~~~--~~~~~iDp~vf~d~dG~~yl~~~ 136 (275)
T cd09004 68 APS-VIERNGKYYFYFSAN--------GGIGVAVADSPLGPFKDALGKPLIDKFT--FGAQPIDPDVFIDDDGQAYLYWG 136 (275)
T ss_pred CCe-EEEECCEEEEEEEcC--------CcEEEEEeCCCCCCCCCCCCCccccCCc--CCCCccCCCeEECCCCCEEEEEc
Confidence 355 788899999999864 347999999965 6876 33 3333321 23346678888778999999996
Q ss_pred ccCCCccceEEE-EEEcCCCCCCceeEEEcCCCcee-cCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec--CCeeEEEE
Q 006523 209 GSTDKSVQVQNL-AYPADPSDPLLLDWVKYPGNPVL-VPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI--GKTGISLV 284 (642)
Q Consensus 209 G~~~~~~q~q~l-A~S~D~~d~ll~~w~K~~~nPVl-~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~--~~~G~~~l 284 (642)
+.. ...+ ..+.|. .+|+.. ..++ ..+. .-+--|.+ ++ .+|+|||++.+.. +..-.+.+
T Consensus 137 ~~~-----~~~i~~l~~d~-----~~~~~~--~~~~~~~~~----~~~EgP~i-~k-~~G~yyl~ys~~~~~~~~Y~~~y 198 (275)
T cd09004 137 GWG-----HCNVAKLNEDM-----ISFDGE--RDGSEITPK----NYFEGPFM-FK-RNGIYYLMWSEGGWTDPDYHVAY 198 (275)
T ss_pred CcC-----CEEEEEECCCc-----ccccCc--ceeeeccCC----CceecceE-EE-ECCEEEEEEECCCCCCCCceEEE
Confidence 531 1222 234442 456432 1121 1111 12346888 44 6899999887642 11224555
Q ss_pred EEeCCCC-CCEEc
Q 006523 285 YQTTDFK-TYELL 296 (642)
Q Consensus 285 Y~S~Dl~-~W~~~ 296 (642)
.+|++.. -|+..
T Consensus 199 a~s~~~~GP~~~~ 211 (275)
T cd09004 199 AMADSPLGPFERP 211 (275)
T ss_pred EEcCCCCCCcccC
Confidence 6777753 25543
No 67
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=97.33 E-value=0.0097 Score=62.03 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=84.1
Q ss_pred ceEE--CCEEEEEEeeCCCCCCCCCcEEEEEEecCcc-ceEEcCccCCCCCccCCCCeEeeeEEEccCCcEEEEEeccCC
Q 006523 136 PLFY--KGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLYTGSTD 212 (642)
Q Consensus 136 ~~y~--~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~ 212 (642)
++|+ +|+|||||..+..+ .+....|+|+|++.. -|+.++..+ |. ..+....++++++||+.+|+|.....
T Consensus 70 v~y~~~~g~Y~m~~~~~~~~--~~~~~igvA~Sd~p~Gpf~~~~~~~-~~----~~~~~Dp~vf~DdDG~~Yl~~~~~~~ 142 (265)
T cd08985 70 VIYNAKTGKYVMWMHIDSSD--YSDARVGVATSDTPTGPYTYLGSFR-PL----GYQSRDFGLFVDDDGTAYLLYSDRDN 142 (265)
T ss_pred EEEeCCCCEEEEEEEeCCCC--CcceeEEEEEeCCCCCCCEECCccC-CC----CCCccCCceEEcCCCCEEEEEecCCC
Confidence 5664 59999999987522 245679999999865 487765332 21 23467788888889999999986421
Q ss_pred CccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecC-CeeEEEEEEeCCCC
Q 006523 213 KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIG-KTGISLVYQTTDFK 291 (642)
Q Consensus 213 ~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~-~~G~~~lY~S~Dl~ 291 (642)
+...++.-.+ .++...+.+..... ....-.|.+ ++ .+|.|||+...... ....+..++|+++.
T Consensus 143 ---~~i~i~~L~~-------d~~~~~~~~~~~~~----~~~~EaP~i-~K-~~g~YYL~~S~~t~~~~~~~~y~~s~s~~ 206 (265)
T cd08985 143 ---SDLYIYRLTD-------DYLSVTGEVTTVFV----GAGREAPAI-FK-RNGKYYLLTSGLTGWNPNDARYATATSIL 206 (265)
T ss_pred ---CceEEEEeCC-------CcccccceEEEccC----CCccccceE-EE-ECCEEEEEEccCCCccCCceEEEEecCCC
Confidence 2234443322 12222223332111 134558988 55 68999999865321 11235566777763
Q ss_pred -CCEEcccc
Q 006523 292 -TYELLDEY 299 (642)
Q Consensus 292 -~W~~~~~l 299 (642)
.|+..+.+
T Consensus 207 GP~~~~~~~ 215 (265)
T cd08985 207 GPWTDLGNP 215 (265)
T ss_pred CCccccCcC
Confidence 46555443
No 68
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=97.32 E-value=0.0056 Score=63.87 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=75.2
Q ss_pred CCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCcc-ceEEcCccCCCCCccCCCCeEeeeEEEccCCcEEEEEecc
Q 006523 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLYTGS 210 (642)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~ 210 (642)
-|. +.|.+|+|||||..+. ..-+.|+|++.. .|+..+... ....+++++++||+.+|+|.+.
T Consensus 78 AP~-v~~~~gkyy~yys~~~-------~~~~v~~a~~p~Gpw~~~~~~~---------~~iDp~~f~D~dG~~Yl~~~~~ 140 (269)
T cd09001 78 APS-LRYHNGTFYVFFCTNT-------GGTYIYTADDPEGPWTKTALDG---------GYHDPSLLFDDDGTAYLVYGGG 140 (269)
T ss_pred CCc-eEEECCEEEEEEEecC-------CCeEEEEcCCCCCCCcCCCcCC---------CcccCceEEcCCCCEEEEeCCC
Confidence 454 7888999999998751 124677887744 576654221 3457788888899999998653
Q ss_pred CCCccceEEEEE-EcCCCCCCceeEEEcCCCce-ecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCCeeEEEEEEeC
Q 006523 211 TDKSVQVQNLAY-PADPSDPLLLDWVKYPGNPV-LVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQTT 288 (642)
Q Consensus 211 ~~~~~q~q~lA~-S~D~~d~ll~~w~K~~~nPV-l~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~~G~~~lY~S~ 288 (642)
.+.++. +.|. .... ...++ +..+. ......--|++ ++ .+|+|||++.+.......+.+++|+
T Consensus 141 ------~i~~~~l~~d~-----~~~~--~~~~~~~~~~~-~~~~~~Egp~i-~k-~~G~YYl~~S~~~~~~~~~~~~~s~ 204 (269)
T cd09001 141 ------TIRLVELSPDL-----TGVG--GKDQVIIDAGE-EIGLGAEGSHL-YK-INGYYYIFNIAWGGGGRTQTCLRSK 204 (269)
T ss_pred ------cEEEEEECccc-----CCcC--CCceEEEeCCC-ccccccccCeE-EE-ECCEEEEEEecCCCCCceEEEEEeC
Confidence 233433 3332 2221 12233 33221 11123446888 44 6899999987542222346678888
Q ss_pred CCC
Q 006523 289 DFK 291 (642)
Q Consensus 289 Dl~ 291 (642)
++.
T Consensus 205 ~~~ 207 (269)
T cd09001 205 SLT 207 (269)
T ss_pred CCC
Confidence 854
No 69
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=97.22 E-value=0.011 Score=63.63 Aligned_cols=167 Identities=19% Similarity=0.230 Sum_probs=98.6
Q ss_pred ccccceeeeecC--CCCccCCccceEEC-CEEEEEEeeCCCCC-------CCCCcEEEEEEecCc-cceEEcCccCCCCC
Q 006523 115 TWQRTSFHFQPE--KNWMNDPNGPLFYK-GWYHLFYQYNPDSA-------VWGNITWGHAVSADL-IHWLYLPIAMVPDQ 183 (642)
Q Consensus 115 ~w~Rp~yHf~P~--~gwmNDPnG~~y~~-G~YHLFYQ~nP~~~-------~wG~~~WGHA~S~DL-vhW~~~p~AL~Pd~ 183 (642)
.|..++.-.... ...+.||. ++... |+.+|||...+... .+...+..+..|.|- ..|.. |..|.+..
T Consensus 59 tW~~~~~i~~~~~~~~~~~~p~-~v~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~-p~~l~~~~ 136 (351)
T cd00260 59 TWSPSTVISDGDGKSSRVKDPT-VVVDGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSS-PRDLTPSV 136 (351)
T ss_pred cccccEEehhcCCCCCcEEcce-EEEcCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcCCceecC-CccCCccc
Confidence 565554333332 24556888 66766 99999998877642 123456677888885 89974 33333322
Q ss_pred c-cCCCCeE--eeeEEEccCCcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEE
Q 006523 184 W-YDINGVW--TGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTA 260 (642)
Q Consensus 184 ~-~D~~Gv~--SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~ 260 (642)
. .+....+ .|..++..+|++++.+.+....+.....+.+|+|.+ .+|+... ++. + ......|.++
T Consensus 137 ~~~~~~~~~~~~g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G----~tW~~~~--~~~--~----~~~~~e~~i~ 204 (351)
T cd00260 137 KGDNWAALFTGPGSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSG----KTWKLGE--GVN--D----AGGCSECSVV 204 (351)
T ss_pred cCcceeEEEecCcCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCC----CCcEECC--CCC--C----CCCCcCCEEE
Confidence 0 0112233 233455678998776554433334556678898875 8997632 111 1 1234568875
Q ss_pred EeCCCCeEEEEEeeecCCeeEEEEEEeCC-CCCCEEccc
Q 006523 261 WAGPDGKWRLTIGSKIGKTGISLVYQTTD-FKTYELLDE 298 (642)
Q Consensus 261 w~~~~g~w~MviGa~~~~~G~~~lY~S~D-l~~W~~~~~ 298 (642)
- -++|+.+|+..... .+...+|.|.| ..+|+....
T Consensus 205 e-l~dG~l~~~~R~~~--~~~~~~~~S~D~G~tWs~~~~ 240 (351)
T cd00260 205 E-LSDGKLYMYTRDNS--GGRRPVYESRDMGTTWTEALG 240 (351)
T ss_pred E-ecCCEEEEEEeeCC--CCcEEEEEEcCCCcCcccCcC
Confidence 2 25898888765432 45666788877 589986543
No 70
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=97.08 E-value=0.018 Score=60.41 Aligned_cols=142 Identities=17% Similarity=0.104 Sum_probs=80.7
Q ss_pred cCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCcc-ceEEcCccCCCCCccCCCCeEeeeEEEccCCcEEEEEec
Q 006523 131 NDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLYTG 209 (642)
Q Consensus 131 NDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG 209 (642)
.-|. ++|++|+|||||...... + ...-+.++|+|.. -|++ +. +.+. .+..++++.++||+++|+|..
T Consensus 69 WAP~-v~~~~g~yy~yy~~~~~~--~-~~~~~v~~s~~p~gpw~~-~~-~~~~------~~iDp~vf~d~dG~~Y~~~~~ 136 (288)
T cd09000 69 WAPT-IRYHDGTFYLITTNVDGM--K-DGGNFIVTADDPAGPWSD-PV-WLDS------GGIDPSLFFDDDGKVYLVGNG 136 (288)
T ss_pred Ecce-EEEECCEEEEEEEecCCC--C-CCceEEEEeCCCCCCCcC-CE-ecCC------CccCCceeEcCCCCEEEEecc
Confidence 3465 788899999999876432 2 2345678898873 6764 22 2221 456788888779999998765
Q ss_pred cCCC----ccceEEEEEEcCCCCCCceeEEEcCCCce-ecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeec-CCeeEEE
Q 006523 210 STDK----SVQVQNLAYPADPSDPLLLDWVKYPGNPV-LVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-GKTGISL 283 (642)
Q Consensus 210 ~~~~----~~q~q~lA~S~D~~d~ll~~w~K~~~nPV-l~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~-~~~G~~~ 283 (642)
.... ....+.++.... ..++- .+.|+ +.... .....--|.+ ++ .+|+|||++.... ...-.+.
T Consensus 137 ~~~~~~~~~~~~i~~~~l~~------~~~~~-~~~~~~~~~~~--~~~~~Egp~v-~k-~~g~YYl~ys~~~~~~~~~v~ 205 (288)
T cd09000 137 WDERRGYNGHGGIWLQEIDL------ETGKL-LGEPKVIWNGT--GGRWPEGPHL-YK-RDGWYYLLIAEGGTGYGHSVT 205 (288)
T ss_pred cCCccccCCCCcEEEEEEcc------ccCCC-CCCcEEEEeCC--CCCCcccCeE-EE-ECCEEEEEEecCCCCCCeEEE
Confidence 4221 123344443322 11211 12221 11110 0112346887 55 6899999985432 1223567
Q ss_pred EEEeCCCC-CCEE
Q 006523 284 VYQTTDFK-TYEL 295 (642)
Q Consensus 284 lY~S~Dl~-~W~~ 295 (642)
+++|+++. -|+.
T Consensus 206 ~~~s~~~~Gp~~~ 218 (288)
T cd09000 206 VARSRSITGPYEP 218 (288)
T ss_pred EEEeCCCCCCCcc
Confidence 88999876 5654
No 71
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=97.05 E-value=0.021 Score=61.06 Aligned_cols=168 Identities=13% Similarity=0.205 Sum_probs=91.2
Q ss_pred ccccccccceeeeec--CCCCcc---CCccceEEC----CEEEEEEeeCCCCCCCCCcEEEEEEecCcc-ceEEc-CccC
Q 006523 111 NAMFTWQRTSFHFQP--EKNWMN---DPNGPLFYK----GWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYL-PIAM 179 (642)
Q Consensus 111 ~~~~~w~Rp~yHf~P--~~gwmN---DPnG~~y~~----G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~-p~AL 179 (642)
..|..|+....-|.| ...|.. -|. +++++ |+|+|||... ....|.|+|++.. .|+.+ +..|
T Consensus 54 ~DL~~W~~~g~v~~~~~~~~w~~~~WAP~-v~~~~~~~~gkyylyy~~~-------~~~igva~SdsP~GP~~~~~g~~l 125 (311)
T cd09003 54 DDMVNWTDHGEIFVPNGIAKWAGNSWAPS-IAVKKINGKGKFYLYFANG-------GGGIGVLTADSPVGPWTDPLGKPL 125 (311)
T ss_pred CCCCCcEEcccccCcCCCCCcccccCCCc-eEEeccCCCCEEEEEEecC-------CCeEEEEEcCCCCCCcccCCCCee
Confidence 345567554444432 223322 354 67777 9999999632 2357999999955 79864 3222
Q ss_pred -CCC-CccC-CCCeEeeeEEEccCCcEEEEEeccCC----CccceEEEEEEc-CCCCCCceeEEEcCCCceecCCCCCCC
Q 006523 180 -VPD-QWYD-INGVWTGSATILPDGQIVMLYTGSTD----KSVQVQNLAYPA-DPSDPLLLDWVKYPGNPVLVPPRHIGP 251 (642)
Q Consensus 180 -~Pd-~~~D-~~Gv~SGSavv~~dG~~~~~YTG~~~----~~~q~q~lA~S~-D~~d~ll~~w~K~~~nPVl~~p~g~~~ 251 (642)
.+. ...+ ......+++++++||+.+|+|.+... ...+...+|.-. |. .+ ..+.++....+
T Consensus 126 ~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~g~~~~~~~~~~~~~i~i~~l~~D~-----~~---~~g~~~~i~~~---- 193 (311)
T cd09003 126 ITGSTPGCAGVVWLFDPAVFVDDDGQGYLYFGGGVPGGRWANPNTARVIKLGDDM-----IS---VDGSAVTIDAP---- 193 (311)
T ss_pred ecCCCCCccCCccccCCCeEECCCCCEEEEECCccCCCccccCCCEEEEEeCCCc-----ee---ccCCceEccCC----
Confidence 211 1111 12256888888889999999975321 111234444333 32 22 22333332111
Q ss_pred CCCCCCEEEEeCCCCeEEEEEeeec-------CCeeEEEEEEeCCCC-CCEEccccc
Q 006523 252 KDFRDPTTAWAGPDGKWRLTIGSKI-------GKTGISLVYQTTDFK-TYELLDEYL 300 (642)
Q Consensus 252 ~~fRDP~V~w~~~~g~w~MviGa~~-------~~~G~~~lY~S~Dl~-~W~~~~~l~ 300 (642)
..+-=|++ ++ .+|+|||++.+.- .....+.+.+|++.. -|+..+.++
T Consensus 194 ~~~Egp~~-~K-~~G~YYL~ys~~~~~~~~~~~~~y~v~y~~s~~~~GP~~~~g~il 248 (311)
T cd09003 194 YFFEASGL-HK-INGTYYYSYCTNFGGRDPGKPPPGRIAYMTSKNPMGPFTYKGIIL 248 (311)
T ss_pred CceEeeeE-EE-ECCEEEEEEeCCCCccCCCCCCceeEEEEEcCCCCCCcccCCEec
Confidence 23446777 44 6899999886531 223345555777643 466554443
No 72
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=97.05 E-value=0.021 Score=58.86 Aligned_cols=164 Identities=19% Similarity=0.307 Sum_probs=95.3
Q ss_pred ccccceeeeecC--CCCccCCccceE-ECCEEEEEEeeCCCCCCCCCcEEEEEEecC-ccceEEcCccCCCCCccCCCCe
Q 006523 115 TWQRTSFHFQPE--KNWMNDPNGPLF-YKGWYHLFYQYNPDSAVWGNITWGHAVSAD-LIHWLYLPIAMVPDQWYDINGV 190 (642)
Q Consensus 115 ~w~Rp~yHf~P~--~gwmNDPnG~~y-~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~D-LvhW~~~p~AL~Pd~~~D~~Gv 190 (642)
+|-.|+-=+.++ ..=..||. +++ .+|+.||||........|......+.+|+| ..+|.... .|.+.......+.
T Consensus 31 tWs~~~~v~~~~~~~~~~~~p~-~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~-~l~~~~~~~~~~~ 108 (275)
T PF13088_consen 31 TWSEPRIVADGPKPGRRYGNPS-LVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPT-DLPPGWFGNFSGP 108 (275)
T ss_dssp EEEEEEEEETSTBTTCEEEEEE-EEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEE-EEHHHCCCSCEEC
T ss_pred eeCCCEEEeeccccCCcccCcE-EEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCcc-ccccccccceecc
Confidence 465555444444 22335676 444 499999999666555445444444599999 99998754 2222211222344
Q ss_pred EeeeEEEccCCcEEEE-EeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEE
Q 006523 191 WTGSATILPDGQIVML-YTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWR 269 (642)
Q Consensus 191 ~SGSavv~~dG~~~~~-YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~ 269 (642)
..+.++...+|++++- |.. . .......+.+|.|++ ++|+... ++.. ....--|.++ ...+|+.+
T Consensus 109 ~~~~~i~~~~G~l~~~~~~~-~-~~~~~~~~~~S~D~G----~tW~~~~--~~~~------~~~~~e~~~~-~~~dG~l~ 173 (275)
T PF13088_consen 109 GRGPPIQLPDGRLIAPYYHE-S-GGSFSAFVYYSDDGG----KTWSSGS--PIPD------GQGECEPSIV-ELPDGRLL 173 (275)
T ss_dssp SEEEEEEECTTEEEEEEEEE-S-SCEEEEEEEEESSTT----SSEEEEE--ECEC------SEEEEEEEEE-EETTSEEE
T ss_pred ceeeeeEecCCCEEEEEeec-c-ccCcceEEEEeCCCC----ceeeccc--cccc------cCCcceeEEE-ECCCCcEE
Confidence 4554456679987775 443 1 223566788999986 8998752 2210 0122245553 34788888
Q ss_pred EEEeeecCCeeEEEEEEeCC-CCCCEEcc
Q 006523 270 LTIGSKIGKTGISLVYQTTD-FKTYELLD 297 (642)
Q Consensus 270 MviGa~~~~~G~~~lY~S~D-l~~W~~~~ 297 (642)
|++-.. . .+.+.+++|.| ..+|+...
T Consensus 174 ~~~R~~-~-~~~~~~~~S~D~G~TWs~~~ 200 (275)
T PF13088_consen 174 AVFRTE-G-NDDIYISRSTDGGRTWSPPQ 200 (275)
T ss_dssp EEEEEC-S-STEEEEEEESSTTSS-EEEE
T ss_pred EEEEcc-C-CCcEEEEEECCCCCcCCCce
Confidence 887553 1 22666778877 89998743
No 73
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.0078 Score=67.83 Aligned_cols=140 Identities=23% Similarity=0.397 Sum_probs=79.7
Q ss_pred EEEEecCccceEEcCccCCCCC------cc-CCCCeEeeeEEEccCCcEEEEEeccCCCc---cceEEEEEEcCCCCCCc
Q 006523 162 GHAVSADLIHWLYLPIAMVPDQ------WY-DINGVWTGSATILPDGQIVMLYTGSTDKS---VQVQNLAYPADPSDPLL 231 (642)
Q Consensus 162 GHA~S~DLvhW~~~p~AL~Pd~------~~-D~~Gv~SGSavv~~dG~~~~~YTG~~~~~---~q~q~lA~S~D~~d~ll 231 (642)
--+.|+||+||+...-.|.+.. .+ +..|||..++. .+||+++|+||-..... ....+..++++..+
T Consensus 56 ~i~hS~DL~nW~~v~tpl~~~~~ld~kgn~~~S~giWAPdl~-y~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~--- 131 (549)
T COG3507 56 AIHHSRDLVNWTLVSTPLIRTSQLDLKGNFPYSGGIWAPDLS-YHDGKFWLYYTDVKRSGGPYKNAGNYLVTAESID--- 131 (549)
T ss_pred eeeccccccCcEEecccccCcchhhhhcccCCCCceecccee-cCCCcEEEEEecccccCCcccccccEEEEecCCC---
Confidence 4577999999998775444432 22 46789999986 79999999997654221 11123333332211
Q ss_pred eeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCC------eeEEEEEEeCCCCCCEEccc----ccc
Q 006523 232 LDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGK------TGISLVYQTTDFKTYELLDE----YLH 301 (642)
Q Consensus 232 ~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~------~G~~~lY~S~Dl~~W~~~~~----l~~ 301 (642)
-.|.. |+..+-. .--||.+++ +++|+-+|+.|+.... .|+ +++-.|-..-++.+. ++.
T Consensus 132 G~WsD----pi~l~~~-----~~iDPslf~-D~dGr~wlv~~~w~~~~~~~~~~~i--~l~~~~~~~~~l~g~~~~~~~~ 199 (549)
T COG3507 132 GPWSD----PIKLNGS-----NAIDPSLFF-DKDGRKWLVNGSWDGGIFMHSFAGI--ILQEYDKTTQKLVGQGYKIIFD 199 (549)
T ss_pred CCccc----ceecCCc-----CccCCceee-cCCCCEEEEecccCCCcccccccce--eeeeccccccccCCccceeEec
Confidence 35654 4443221 134999965 6889988998875321 133 333333333333333 222
Q ss_pred cCCCCCceeeeceEEec
Q 006523 302 AVPGTGMWECVDFYPVA 318 (642)
Q Consensus 302 ~~~~~gmWECPdlf~l~ 318 (642)
. .+.+.-|-|-+++-+
T Consensus 200 G-~~~~~~EGPhl~k~~ 215 (549)
T COG3507 200 G-GNGGLTEGPHLYKKT 215 (549)
T ss_pred c-CCCccccCceeeccC
Confidence 1 112356888777664
No 74
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=96.49 E-value=0.25 Score=50.72 Aligned_cols=172 Identities=15% Similarity=0.257 Sum_probs=91.9
Q ss_pred eeeeecCCCCc--cCCccceEECCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccCCCCCccCCCCeEeeeEE-
Q 006523 120 SFHFQPEKNWM--NDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSAT- 196 (642)
Q Consensus 120 ~yHf~P~~gwm--NDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSav- 196 (642)
.--.+|..||. -||. .++++|+||+|......+.. ||...-.-+-+|.+..-| +-..-+. +.-...++
T Consensus 13 g~L~~Pk~g~~slKD~T-~V~ynGk~~VyAtt~d~~~~-----y~sm~f~~Ftdws~~~sA--~q~~m~~-~~vAP~vFY 83 (271)
T PF03664_consen 13 GPLAQPKSGWVSLKDFT-IVPYNGKHHVYATTADTGGG-----YGSMNFGPFTDWSQMASA--SQNYMDQ-SAVAPQVFY 83 (271)
T ss_pred CccccCCCCceeccCce-EEeECCEEEEEEEeccCCCc-----cceEeeeccCCHHHhhcc--ccccCCc-ccccceEEE
Confidence 33456888985 6998 99999999999987755444 444444456677665432 1111111 11111221
Q ss_pred EccCCcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecC-CCCCCCCCCCCCEEEEeCCCCeEEEEEeee
Q 006523 197 ILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVP-PRHIGPKDFRDPTTAWAGPDGKWRLTIGSK 275 (642)
Q Consensus 197 v~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~-p~g~~~~~fRDP~V~w~~~~g~w~MviGa~ 275 (642)
..+...+||.|--... .-....+.|..+| ..|... .|+... ..+ .....-|..|+-. ...+ ||....
T Consensus 84 FaPk~~W~L~yQwg~~----~fsY~Ts~Dptnp--ngWSap--q~lf~g~i~~-~~~g~iD~~vI~D-~~n~-yLFfa~- 151 (271)
T PF03664_consen 84 FAPKNIWYLAYQWGPA----AFSYSTSSDPTNP--NGWSAP--QPLFSGSISG-SGTGPIDQWVICD-DTNM-YLFFAG- 151 (271)
T ss_pred ecCCcEEEEEEecCCC----cceeecCCCCCCC--ccCCCC--cccccccccC-CCCCceeeEEEec-CCce-EEEEcC-
Confidence 2467778888852211 1123345677666 358764 455432 111 1234578988642 3334 444432
Q ss_pred cCCeeEEEEEEeCC-CCCCEEccccc------ccCCCCCceeeeceEEec
Q 006523 276 IGKTGISLVYQTTD-FKTYELLDEYL------HAVPGTGMWECVDFYPVA 318 (642)
Q Consensus 276 ~~~~G~~~lY~S~D-l~~W~~~~~l~------~~~~~~gmWECPdlf~l~ 318 (642)
+ .|. ||+|.- +-++ .+.+. .........|-++.|+|.
T Consensus 152 D--nGk--iYRs~~~i~nF--P~~fgs~~~vvmsd~~~nLFEA~~VYkv~ 195 (271)
T PF03664_consen 152 D--NGK--IYRSSMPIGNF--PGGFGSSYTVVMSDTRNNLFEAVQVYKVK 195 (271)
T ss_pred C--CCc--EEEeccchhhC--CCCCCCceEEEEecCccceeeeeEEEEEc
Confidence 2 254 688753 2222 12221 111123479999999996
No 75
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=96.28 E-value=0.33 Score=49.99 Aligned_cols=146 Identities=16% Similarity=0.080 Sum_probs=78.9
Q ss_pred CEEEEEEeeCCCCCCCCCcEEEEEEe--cCc-cceEEcCccCCCCCccCCCCeEeeeEEEccCCcEEEEEeccCCCc---
Q 006523 141 GWYHLFYQYNPDSAVWGNITWGHAVS--ADL-IHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLYTGSTDKS--- 214 (642)
Q Consensus 141 G~YHLFYQ~nP~~~~wG~~~WGHA~S--~DL-vhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~--- 214 (642)
|+...|+.- +...+.....-.+| +|. .+|...-....+. -....+..++++.+++|+++|+|+......
T Consensus 1 G~l~a~~~~---~~~~~~~d~~i~~S~s~D~G~tWs~~~~v~~~~--~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~ 75 (275)
T PF13088_consen 1 GRLLAVWEG---GSDEGAIDIVIRRSRSTDGGKTWSEPRIVADGP--KPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWS 75 (275)
T ss_dssp SEEEEEEEE---SSCSCCEEEEEEEECCCCCTTEEEEEEEEETST--BTTCEEEEEEEEEETTSEEEEEEEEEETTESCC
T ss_pred CeEEEEEEC---CcccCCCCEEEEEEEeeCCCCeeCCCEEEeecc--ccCCcccCcEEEEeCCCCEEEEEEEccCCCCCC
Confidence 455566655 33334444444555 985 7898754333332 123467777777778999999995443221
Q ss_pred cceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEEEEeeecCCeeEEEEEEeC-CCCCC
Q 006523 215 VQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQTT-DFKTY 293 (642)
Q Consensus 215 ~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~MviGa~~~~~G~~~lY~S~-Dl~~W 293 (642)
.......+|.|+| ++|.... .|...+........+.+-+ -. .+|++++..-........+.++.|+ +.+.|
T Consensus 76 ~~~~~~~~S~D~G----~TWs~~~--~l~~~~~~~~~~~~~~~~i-~~-~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW 147 (275)
T PF13088_consen 76 GSRIYYSRSTDGG----KTWSEPT--DLPPGWFGNFSGPGRGPPI-QL-PDGRLIAPYYHESGGSFSAFVYYSDDGGKTW 147 (275)
T ss_dssp TCEEEEEEESSTT----SS-EEEE--EEHHHCCCSCEECSEEEEE-EE-CTTEEEEEEEEESSCEEEEEEEEESSTTSSE
T ss_pred ceeEEEEEECCCC----CCCCCcc--ccccccccceeccceeeee-Ee-cCCCEEEEEeeccccCcceEEEEeCCCCcee
Confidence 1222238899975 8999863 3322211111112233323 22 5888877632222223445555555 57999
Q ss_pred EEcccc
Q 006523 294 ELLDEY 299 (642)
Q Consensus 294 ~~~~~l 299 (642)
+....+
T Consensus 148 ~~~~~~ 153 (275)
T PF13088_consen 148 SSGSPI 153 (275)
T ss_dssp EEEEEC
T ss_pred eccccc
Confidence 987654
No 76
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=95.86 E-value=0.23 Score=52.52 Aligned_cols=142 Identities=12% Similarity=0.160 Sum_probs=77.2
Q ss_pred CCccceEE--CCEEEEEEeeCCCCCCCCCcEEEEEEecCccc---eEEcCccCCCCCccCCCCeEeeeEEEccCCcEEEE
Q 006523 132 DPNGPLFY--KGWYHLFYQYNPDSAVWGNITWGHAVSADLIH---WLYLPIAMVPDQWYDINGVWTGSATILPDGQIVML 206 (642)
Q Consensus 132 DPnG~~y~--~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvh---W~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~ 206 (642)
-|. ++|+ +++|+||||+.+ ...++|+|..+ |....+.......-...|...-.+ +.+|+++|||
T Consensus 80 APq-Vfyf~pk~kwYL~Yq~~~---------~~yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~v-I~Dd~~~YLf 148 (303)
T cd08987 80 APQ-VFYFAPQNKWYLIYQWWP---------AAYSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWV-ICDDTNCYLF 148 (303)
T ss_pred cCE-EeeeccCCEEEEEEecCc---------eEEEeCCCCCCCCccCCCcccccCcccCCCCCccceeE-EeCCCCEEEE
Confidence 565 6655 599999999732 45899999665 754332222211112234455555 5779999999
Q ss_pred EeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCC--eEEEEEeeecCCeeE-EE
Q 006523 207 YTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDG--KWRLTIGSKIGKTGI-SL 283 (642)
Q Consensus 207 YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g--~w~MviGa~~~~~G~-~~ 283 (642)
+.+... .+..|.... .+|-....+++....+.-...-|--|.| .+ .+| +|+|++-+.....++ ..
T Consensus 149 f~~dnG----~iyra~~~~------~nFp~~~~~~~~~~~~~~~~~lfEa~~V-yk-v~G~~~YlmiveA~g~~~~rYfr 216 (303)
T cd08987 149 FSDDNG----KLYRSSTTL------GNFPNGGTETVIIMSDSNKNNLFEASNV-YK-VKGQNQYLLIVEAIGSDGGRYFR 216 (303)
T ss_pred EecCCC----eEEEEecch------hhCCCCCCccEEEecCCCccccceeeEE-EE-ECCCeEEEEEEEecCCCCCCeEE
Confidence 987532 233443222 1222211223222111111245667888 54 445 999999775321122 22
Q ss_pred EEEeCCCC-CCEEc
Q 006523 284 VYQTTDFK-TYELL 296 (642)
Q Consensus 284 lY~S~Dl~-~W~~~ 296 (642)
-++|+.|. .|+..
T Consensus 217 s~Ts~Sl~GpWt~~ 230 (303)
T cd08987 217 SWTATSLDGPWTPL 230 (303)
T ss_pred EEEcCCCCCCceec
Confidence 36777764 68866
No 77
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=95.80 E-value=0.08 Score=56.19 Aligned_cols=134 Identities=15% Similarity=0.180 Sum_probs=73.1
Q ss_pred CCCccCCccceEE-CCEEEEEEeeCCCCCCCCCcEEEEEEecCccceEEcCccC----CCCCccC----------CCCeE
Q 006523 127 KNWMNDPNGPLFY-KGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAM----VPDQWYD----------INGVW 191 (642)
Q Consensus 127 ~gwmNDPnG~~y~-~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL----~Pd~~~D----------~~Gv~ 191 (642)
..+.-||+ ++.+ +|+.+|+|-..- ++ .-|+---+.|+..-.-.+..+ .|+..|. ..++.
T Consensus 88 ~~~~IDp~-vf~DdDGk~Yl~~g~~~----~~-~i~~~eL~~d~~~~~g~~~~l~~~~~~~~~We~~g~~~~~~~~~~~~ 161 (295)
T cd08982 88 PPGLADPA-LFIDDDGRLYLYYGCSN----NY-PLRGVEVDPDTFRPIGEPVELIPGNPDKHGWERFGENNDNPDKTPWM 161 (295)
T ss_pred CCCccCCc-eEECCCCCEEEEEecCC----CC-CeEEEEECcccCCccCcceEEEeCCCCCcCeEecCcccccccCCccc
Confidence 35667997 5555 599999984211 11 123333344433211111111 1111111 23466
Q ss_pred eeeEEEccCCcEEEEEeccCCC-ccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEEEeCCCCeEEE
Q 006523 192 TGSATILPDGQIVMLYTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRL 270 (642)
Q Consensus 192 SGSavv~~dG~~~~~YTG~~~~-~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~w~~~~g~w~M 270 (642)
-|..+...+|+++|+|++.... ..-.+.+|+|++. +--|++...|||+..+.+. ...--...+ ....+|+|++
T Consensus 162 EGP~i~k~~G~YYL~yS~~~~~~~~Y~v~~a~s~~p----~GP~~~~~~~pil~~~~~~-~~g~GH~s~-v~~~~G~~~~ 235 (295)
T cd08982 162 EGAWMTKHNGKYYLQYAAPGTEFNTYADGVYVSDSP----LGPFTYQPHNPFSYKPGGF-ITGAGHGST-FQDKYGNYWH 235 (295)
T ss_pred cccEEEEECCEEEEEEeCCCcccCcEeEEEEEeCCC----CCCCCcCCCCccccCCCCe-EecCCcccE-EECCCCCEEE
Confidence 7888777899999999865322 2235678888764 3467776678988643221 011123334 3457788888
Q ss_pred EE
Q 006523 271 TI 272 (642)
Q Consensus 271 vi 272 (642)
+.
T Consensus 236 ~y 237 (295)
T cd08982 236 VG 237 (295)
T ss_pred EE
Confidence 75
No 78
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=94.97 E-value=0.27 Score=52.34 Aligned_cols=137 Identities=21% Similarity=0.298 Sum_probs=86.8
Q ss_pred cccccccccceeeeecCCCCccCCccc-----eEECCEEEEEEeeCCCCCCCCCcEEEEEEe-cCccceEEcC---ccCC
Q 006523 110 TNAMFTWQRTSFHFQPEKNWMNDPNGP-----LFYKGWYHLFYQYNPDSAVWGNITWGHAVS-ADLIHWLYLP---IAMV 180 (642)
Q Consensus 110 ~~~~~~w~Rp~yHf~P~~gwmNDPnG~-----~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S-~DLvhW~~~p---~AL~ 180 (642)
|..++.|++...=+.|.. + .|.+|+ +.+++.+|+||.-+-.. +...-..|+| .|.+||+..+ +.|.
T Consensus 45 S~Dlv~W~~~~~aL~P~~-~-~d~~g~~SGs~~~~~~~~~~~YTg~~~~---~~~~q~~A~s~d~~~~w~k~~~~~pvi~ 119 (308)
T PF00251_consen 45 SKDLVHWEHLPVALPPDE-E-YDADGCFSGSAVVDDDNLVLFYTGNNRD---GKQVQCLAYSTDDGITWTKYPQGNPVIP 119 (308)
T ss_dssp ESSSSSEEEEEEEE-SSS-G-GGTTEEEEEEEEEETTCEEEEEEEEETT---TEEEEEEEEESSTTSSEEE-TTTCESBE
T ss_pred CCCCCCceeCCceEcccc-c-CCcCccCcceEEEECCEEEEEEeccCCC---CCeEEEEEEECCCCCceEEcCCCCcEEE
Confidence 456778877765566664 3 477773 33678999999866442 1345678999 8899998843 3443
Q ss_pred CCCccCCCCeEeeeEEEccCCcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEE
Q 006523 181 PDQWYDINGVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTA 260 (642)
Q Consensus 181 Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~ 260 (642)
.....+..+.-...++...+|+++|+..+... ......+..|+| |++|+.. .++...... ....+--|.++
T Consensus 120 ~~p~~~~~~~RDP~v~~~~~~~~~m~~g~~~~-~~g~i~~y~S~D-----l~~W~~~--~~l~~~~~~-~g~~~ECPdlf 190 (308)
T PF00251_consen 120 EPPPGDTTDFRDPKVFWREDGRWYMLLGAGRD-GRGCILLYTSDD-----LIHWEYL--GPLFIPGDN-GGGMWECPDLF 190 (308)
T ss_dssp SSSTTSCTSEEEEEEEEECTTEEEEEEEEEET-TEEEEEEEEESS-----SSSEEEE--EEESEEETT-TSSEEEEEEEE
T ss_pred ecccCCCCccccCeEEEecCCEEEEEEecccc-CcceEEEEEcCC-----cccCcee--Ccccccccc-cccccccceEE
Confidence 21222567788999866778999998876654 344566777877 4899886 344432211 11334456663
No 79
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=94.35 E-value=7.4 Score=41.68 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=82.7
Q ss_pred CcEEEEEEecC-ccceEEcCccCCCCCccCCCCeEeeeEEEccCCcEEEEEeccCCC----------ccceEEEEEEcCC
Q 006523 158 NITWGHAVSAD-LIHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLYTGSTDK----------SVQVQNLAYPADP 226 (642)
Q Consensus 158 ~~~WGHA~S~D-LvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~----------~~q~q~lA~S~D~ 226 (642)
.+...-+.|.| ...|.... ++..... ....++.++.+++.+|+++|||...... ....+.+.+|.|.
T Consensus 45 ~~~iv~~~S~D~G~tW~~~~-~i~~~~~-~~~~~~~p~~v~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~ 122 (351)
T cd00260 45 AIDIVARRSTDGGKTWSPST-VISDGDG-KSSRVKDPTVVVDGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDD 122 (351)
T ss_pred ccceeEEEeccCCCcccccE-EehhcCC-CCCcEEcceEEEcCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcC
Confidence 46667788887 68998753 3333322 2356788888875559999999876421 2345678889887
Q ss_pred CCCCceeEEEcCCCceecCC--CCCCCCCCCCC--EEEEeCCCCeEEEEEeeecC--CeeEEEEEEeCCCCCCEEccccc
Q 006523 227 SDPLLLDWVKYPGNPVLVPP--RHIGPKDFRDP--TTAWAGPDGKWRLTIGSKIG--KTGISLVYQTTDFKTYELLDEYL 300 (642)
Q Consensus 227 ~d~ll~~w~K~~~nPVl~~p--~g~~~~~fRDP--~V~w~~~~g~w~MviGa~~~--~~G~~~lY~S~Dl~~W~~~~~l~ 300 (642)
+ .+|.+. ..+.... ..+ ...++-| -+. -.+|+++|.+-.... ..-..++|..++.++|+.....
T Consensus 123 G----~tW~~p--~~l~~~~~~~~~-~~~~~~~g~gi~--l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~- 192 (351)
T cd00260 123 G----ITWSSP--RDLTPSVKGDNW-AALFTGPGSGIQ--MKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGV- 192 (351)
T ss_pred C----ceecCC--ccCCccccCcce-eEEEecCcCeEE--ecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCC-
Confidence 5 899863 1222111 011 1112233 221 247888777644322 1223445555668999864322
Q ss_pred ccCCCCCceeeeceEEec
Q 006523 301 HAVPGTGMWECVDFYPVA 318 (642)
Q Consensus 301 ~~~~~~gmWECPdlf~l~ 318 (642)
.. ..++.| |.+++++
T Consensus 193 ~~--~~~~~e-~~i~el~ 207 (351)
T cd00260 193 ND--AGGCSE-CSVVELS 207 (351)
T ss_pred CC--CCCCcC-CEEEEec
Confidence 11 134566 5677885
No 80
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=90.11 E-value=1.3 Score=47.68 Aligned_cols=89 Identities=26% Similarity=0.483 Sum_probs=49.7
Q ss_pred eeEEEccCCcEEEEEeccCCCcc-ceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEE-EeCCCCeEEE
Q 006523 193 GSATILPDGQIVMLYTGSTDKSV-QVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTA-WAGPDGKWRL 270 (642)
Q Consensus 193 GSavv~~dG~~~~~YTG~~~~~~-q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~-w~~~~g~w~M 270 (642)
||.|+.+||.+++=-.+..+... .+-.+-||.|.+ .+|+-..+. .....+||.|+ | ++|+-.|
T Consensus 124 GSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g----~~W~lskg~---------s~~gC~~psv~EW--e~gkLlM 188 (310)
T PF13859_consen 124 GSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDG----KTWKLSKGM---------SPAGCSDPSVVEW--EDGKLLM 188 (310)
T ss_dssp EE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTT----SS-EE-S-------------TT-EEEEEEEE---TTEEEE
T ss_pred CCceEEcCCCEEEEEeeeccCccceEEEEEEECCCc----cceEecccc---------CCCCcceEEEEec--cCCeeEE
Confidence 44456679998877676655544 366788999864 799864321 12456899987 5 4778777
Q ss_pred EEeeecCCeeEEEEEEeCCC-CCCEE-cccc
Q 006523 271 TIGSKIGKTGISLVYQTTDF-KTYEL-LDEY 299 (642)
Q Consensus 271 viGa~~~~~G~~~lY~S~Dl-~~W~~-~~~l 299 (642)
+. ++.+ |.-.+|+|.|. ..|+. ++.|
T Consensus 189 ~~-~c~~--g~rrVYeS~DmG~tWtea~gtl 216 (310)
T PF13859_consen 189 MT-ACDD--GRRRVYESGDMGTTWTEALGTL 216 (310)
T ss_dssp EE-E-TT--S---EEEESSTTSS-EE-TTTT
T ss_pred EE-eccc--ceEEEEEEcccceehhhccCcc
Confidence 64 3332 55568999885 78987 4443
No 81
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=86.54 E-value=4 Score=41.38 Aligned_cols=109 Identities=26% Similarity=0.493 Sum_probs=68.4
Q ss_pred CccCCccceEECCE-EEEEEeeCCCCCCCCCcEEEEEEecCccceEE--cCccC-CCCCccCCCCeE--eeeEEEccCCc
Q 006523 129 WMNDPNGPLFYKGW-YHLFYQYNPDSAVWGNITWGHAVSADLIHWLY--LPIAM-VPDQWYDINGVW--TGSATILPDGQ 202 (642)
Q Consensus 129 wmNDPnG~~y~~G~-YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~--~p~AL-~Pd~~~D~~Gv~--SGSavv~~dG~ 202 (642)
+.=|-. .++|+|+ |+++-|-.|. .-|+.....|.-.+- |+- .|+-| .|.-+|+..|.| -|-||+..+|+
T Consensus 131 fsldat-tfeh~gk~yyvwaqkdp~--i~gnsniyiaemenp--wtikgepvmlskpe~dwe~~gfwvnegpav~k~ngk 205 (324)
T COG3940 131 FSLDAT-TFEHNGKLYYVWAQKDPN--IKGNSNIYIAEMENP--WTIKGEPVMLSKPELDWEIKGFWVNEGPAVLKKNGK 205 (324)
T ss_pred ceeeee-eeeeCCEEEEEEeccCCC--ccCCcceEEEeccCC--ceecCceEEecCCCcccEEEEEEecCCceEEEECCE
Confidence 333443 5677876 8888898886 345555556655543 554 34444 344466777866 68888889999
Q ss_pred EEEEEeccCCCccceEEEEEE---cCCCCCCceeEEEcCCCceecC
Q 006523 203 IVMLYTGSTDKSVQVQNLAYP---ADPSDPLLLDWVKYPGNPVLVP 245 (642)
Q Consensus 203 ~~~~YTG~~~~~~q~q~lA~S---~D~~d~ll~~w~K~~~nPVl~~ 245 (642)
+.+-|.....+-.-..+|-.. .|.-|| .+|+|. ..||+..
T Consensus 206 ifi~ysasatd~nycmgllwanen~dlldp--aswtks-ptpvf~t 248 (324)
T COG3940 206 IFITYSASATDVNYCMGLLWANENSDLLDP--ASWTKS-PTPVFKT 248 (324)
T ss_pred EEEEEeccccccceeeeeeeecccCCcCCc--hhcccC-CCcceee
Confidence 999999875432223333333 233344 489996 4788864
No 82
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=85.22 E-value=17 Score=39.22 Aligned_cols=157 Identities=20% Similarity=0.200 Sum_probs=86.7
Q ss_pred cCCccceEECCEEEEEEeeCCC-CC---CCCCcEEEEEEecC-ccceEEcCccCCCCCccCCCCe------EeeeEEEcc
Q 006523 131 NDPNGPLFYKGWYHLFYQYNPD-SA---VWGNITWGHAVSAD-LIHWLYLPIAMVPDQWYDINGV------WTGSATILP 199 (642)
Q Consensus 131 NDPnG~~y~~G~YHLFYQ~nP~-~~---~wG~~~WGHA~S~D-LvhW~~~p~AL~Pd~~~D~~Gv------~SGSavv~~ 199 (642)
==|++.|-.+|+-+|.|...-. ++ .|....=+.+.|.| ..+|+..|..+.+...+- .|+ |.=++....
T Consensus 95 ~iPt~~I~v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~~~~~~~~~~~-~g~~~~~~~fq~~a~~~~ 173 (316)
T PF13810_consen 95 VIPTDGISVGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVPGTIRPNSPFH-PGFNQGNWNFQMAAFVKD 173 (316)
T ss_pred EcccceEEECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCCCccccccccc-CCccccccccccccccCC
Confidence 3478888888998888875421 11 23222346788999 889999986555543111 121 222233346
Q ss_pred CCcEEEEEeccCCCccceEEEEEE--cCCCCCC------cee--EEEcC--CCceecCCCCCCCCCCCCCEEEEeCCCCe
Q 006523 200 DGQIVMLYTGSTDKSVQVQNLAYP--ADPSDPL------LLD--WVKYP--GNPVLVPPRHIGPKDFRDPTTAWAGPDGK 267 (642)
Q Consensus 200 dG~~~~~YTG~~~~~~q~q~lA~S--~D~~d~l------l~~--w~K~~--~nPVl~~p~g~~~~~fRDP~V~w~~~~g~ 267 (642)
||-+|+|=|...+. ....||.- ++..|+. ... |.+.. ..||+..+ +---+|.|.+..|+
T Consensus 174 dgyVYv~gt~~~R~--g~~~LaRV~~~~i~d~~ayeyw~g~~~~W~~~~~~atpv~~~~-------vgElSv~~~~~~gk 244 (316)
T PF13810_consen 174 DGYVYVYGTPFGRN--GGVYLARVPPDDILDRSAYEYWDGSGGGWSWGNPPATPVLPGP-------VGELSVRYNEYLGK 244 (316)
T ss_pred CCEEEEEeCCCCCC--CcEEEEEeCHHHCCChhhccccCCCCcccccCCCCccccccCC-------ccceEEEEeCCCCE
Confidence 77677766655432 22334432 1211110 012 65432 13666533 22346778777899
Q ss_pred EEEEEeeecCCeeEEEEEEeCCCC-CCEEcccc
Q 006523 268 WRLTIGSKIGKTGISLVYQTTDFK-TYELLDEY 299 (642)
Q Consensus 268 w~MviGa~~~~~G~~~lY~S~Dl~-~W~~~~~l 299 (642)
|+|+.... ..+.|.+.++++.. .|.....+
T Consensus 245 ~Vl~~~~~--~~~~I~~RtA~~P~GpWs~~~~l 275 (316)
T PF13810_consen 245 WVLSYFDA--GTGGIVLRTAPSPTGPWSEPKPL 275 (316)
T ss_pred EEEEEecc--cCCcEEEEecCCCCCCCCCCeeE
Confidence 99998642 23567777777776 47644343
No 83
>PTZ00334 trans-sialidase; Provisional
Probab=72.95 E-value=23 Score=42.61 Aligned_cols=85 Identities=20% Similarity=0.347 Sum_probs=53.3
Q ss_pred eeEEEccCCcEEEEEeccCCCccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCCCCCCCCCCEEE-EeCCCCeEEEE
Q 006523 193 GSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTA-WAGPDGKWRLT 271 (642)
Q Consensus 193 GSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~~~~~fRDP~V~-w~~~~g~w~Mv 271 (642)
||.|+..||.+++=-.+..+++..+-.+-||.|.+ +|+=.. +....+.+||.|+ | ++|+-.|+
T Consensus 263 GSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g-----~W~ls~---------g~s~~gC~~P~I~EW--e~gkLlM~ 326 (780)
T PTZ00334 263 GSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATE-----SGNLSK---------GMSADGCSDPSVVEW--KEGKLMMM 326 (780)
T ss_pred cCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCC-----CeEEcC---------CCCCCCCCCCEEEEE--cCCeEEEE
Confidence 44456689998765555544444455678898753 485432 2223467999987 5 35776665
Q ss_pred EeeecCCeeEEEEEEeCCC-CCCEEc
Q 006523 272 IGSKIGKTGISLVYQTTDF-KTYELL 296 (642)
Q Consensus 272 iGa~~~~~G~~~lY~S~Dl-~~W~~~ 296 (642)
. ++.+ |.-.+|+|.|. ..|+..
T Consensus 327 t-~C~d--G~RrVYES~DmG~tWtEA 349 (780)
T PTZ00334 327 T-ACDD--GRRRVYESGDKGDSWTEA 349 (780)
T ss_pred E-EeCC--CCEEEEEECCCCCChhhC
Confidence 4 3432 44468999885 789853
No 84
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=71.54 E-value=54 Score=37.85 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=44.6
Q ss_pred cCCCCccCCccceEECCEEEEEEeeCCCCC-CCCCcEEEEEEecCcc--ceEEcCccCCCCCccCCCCeEeeeEEEccCC
Q 006523 125 PEKNWMNDPNGPLFYKGWYHLFYQYNPDSA-VWGNITWGHAVSADLI--HWLYLPIAMVPDQWYDINGVWTGSATILPDG 201 (642)
Q Consensus 125 P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~-~wG~~~WGHA~S~DLv--hW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG 201 (642)
|-.|=+--|+ ++|++|+|.|+|.--+... .|-+.+ ..++|.+-+ .|.+ |+-+ +.. +.+..|.+.|+||
T Consensus 86 ~~S~giWAPd-l~y~dGkfwl~ytdvk~~~g~~k~~~-nyl~t~~s~~G~WsD-pi~l-~~~-----~~iDPslf~D~dG 156 (549)
T COG3507 86 PYSGGIWAPD-LSYHDGKFWLYYTDVKRSGGPYKNAG-NYLVTAESIDGPWSD-PIKL-NGS-----NAIDPSLFFDKDG 156 (549)
T ss_pred CCCCceeccc-eecCCCcEEEEEecccccCCcccccc-cEEEEecCCCCCccc-ceec-CCc-----CccCCceeecCCC
Confidence 4444444566 8899999999994333322 111211 122332221 2433 1111 111 2677888889999
Q ss_pred cEEEEEeccCC
Q 006523 202 QIVMLYTGSTD 212 (642)
Q Consensus 202 ~~~~~YTG~~~ 212 (642)
+.+|+|-+...
T Consensus 157 r~wlv~~~w~~ 167 (549)
T COG3507 157 RKWLVNGSWDG 167 (549)
T ss_pred CEEEEecccCC
Confidence 99999988753
No 85
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=68.65 E-value=22 Score=38.29 Aligned_cols=96 Identities=18% Similarity=0.315 Sum_probs=55.9
Q ss_pred EccCCcEEEEEeccCCCc-------cceEEEEEEcCCCCCCceeEEEcCCCceecCC---CCCCCCCCCCCEEEEeCCCC
Q 006523 197 ILPDGQIVMLYTGSTDKS-------VQVQNLAYPADPSDPLLLDWVKYPGNPVLVPP---RHIGPKDFRDPTTAWAGPDG 266 (642)
Q Consensus 197 v~~dG~~~~~YTG~~~~~-------~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p---~g~~~~~fRDP~V~w~~~~g 266 (642)
|..+|+.||.|..+..-. .....||+|+|.+ .+|++.+ ..+-... ++......-.....+. .++
T Consensus 101 I~v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G----~tW~~~~-~~~~~~~~~~~g~~~~~~~fq~~a~~-~~d 174 (316)
T PF13810_consen 101 ISVGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNG----ETWTVVP-GTIRPNSPFHPGFNQGNWNFQMAAFV-KDD 174 (316)
T ss_pred EEECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCC----CCceeCC-CcccccccccCCcccccccccccccc-CCC
Confidence 356899999999875311 2256799999975 8999964 1222221 1111000111212222 356
Q ss_pred eEEEEEeeecCCeeEEEEEEe-----CCCCCCEEccc
Q 006523 267 KWRLTIGSKIGKTGISLVYQT-----TDFKTYELLDE 298 (642)
Q Consensus 267 ~w~MviGa~~~~~G~~~lY~S-----~Dl~~W~~~~~ 298 (642)
.|+-++|...++.|.+.|+|- .|+..|++-..
T Consensus 175 gyVYv~gt~~~R~g~~~LaRV~~~~i~d~~ayeyw~g 211 (316)
T PF13810_consen 175 GYVYVYGTPFGRNGGVYLARVPPDDILDRSAYEYWDG 211 (316)
T ss_pred CEEEEEeCCCCCCCcEEEEEeCHHHCCChhhccccCC
Confidence 688888876555677888875 36667776543
No 86
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=53.54 E-value=2.9e+02 Score=31.24 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=78.1
Q ss_pred CCEEEEEEeeCCCCCCCC------CcEEEEEEecC----ccceEEcCccCCCCCccCC-------CCeEeeeEEEc-cCC
Q 006523 140 KGWYHLFYQYNPDSAVWG------NITWGHAVSAD----LIHWLYLPIAMVPDQWYDI-------NGVWTGSATIL-PDG 201 (642)
Q Consensus 140 ~G~YHLFYQ~nP~~~~wG------~~~WGHA~S~D----LvhW~~~p~AL~Pd~~~D~-------~Gv~SGSavv~-~dG 201 (642)
+|+..|||...-.+.... -..-|++...| +-.|+.+-+.+.+|..+-. ...-...++.+ .+|
T Consensus 143 dg~I~LfYTav~~~~~~~~~Q~l~t~~~g~~~~d~~~v~i~g~~~~~~lfe~DG~~Yqt~~Q~~~~afRDP~~f~DP~~G 222 (428)
T PF02435_consen 143 DGSIQLFYTAVGFSDTPTFRQRLATATLGLIHADDDGVWITGFSNHHELFEGDGKHYQTYEQNPGYAFRDPHVFEDPEDG 222 (428)
T ss_dssp TSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEECSTEEEEEEEEEEEEEES--SSSB--HHHHHH---EEEEEEEETTTT
T ss_pred CCeEEEEEeecccCCCcchhhhhhhHhcCeeecCCCceeEccccceeEeeccchhhhhChhhcCCccccCCeeEECCCCC
Confidence 699999998733211111 14567777777 5567766666778864322 23457777766 489
Q ss_pred cEEEEEeccCCC--------------------------------ccceEEEEEEcCCCCCCceeEEEcCCCceecCCCCC
Q 006523 202 QIVMLYTGSTDK--------------------------------SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHI 249 (642)
Q Consensus 202 ~~~~~YTG~~~~--------------------------------~~q~q~lA~S~D~~d~ll~~w~K~~~nPVl~~p~g~ 249 (642)
+.||++.|++.. ..-.++||...+.. +..|+-+ .|+|... ++
T Consensus 223 ~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~---~~~w~~~--~PL~~a~-~v 296 (428)
T PF02435_consen 223 KRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANGAIGIAKLTNDD---GTVWELL--PPLLSAN-GV 296 (428)
T ss_dssp EEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EEEEEEEEESTTT---TSEEEEE--EEEEEET-TT
T ss_pred cEEEEEecccCCCCCccccCccccccccccccccccccccccceecceeeeEEecCCC---CCccEEe--Ccceecc-cc
Confidence 999999998621 01246788887642 2579887 5888742 11
Q ss_pred CCCCCCCCEEEEeCCCCeEEEEEeee
Q 006523 250 GPKDFRDPTTAWAGPDGKWRLTIGSK 275 (642)
Q Consensus 250 ~~~~fRDP~V~w~~~~g~w~MviGa~ 275 (642)
. ...-=|.|+. .+|+||+...++
T Consensus 297 ~-de~ERP~iv~--~~gkyYLFt~s~ 319 (428)
T PF02435_consen 297 N-DELERPHIVF--MNGKYYLFTISH 319 (428)
T ss_dssp B-S-EEEEEEEE--ETTEEEEEEEEE
T ss_pred c-ccccCCcEEE--ECCEEEEEEEec
Confidence 1 1222488864 589999998876
No 87
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=47.63 E-value=28 Score=31.22 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=24.1
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 006523 29 PASHRKPFKGFAAILASAIFLLSLVALII 57 (642)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (642)
+....|.|..++.|+++++++.+|+++++
T Consensus 10 ~~~~g~sW~~LVGVv~~al~~SlLIalaa 38 (102)
T PF15176_consen 10 PGEGGRSWPFLVGVVVTALVTSLLIALAA 38 (102)
T ss_pred CCCCCcccHhHHHHHHHHHHHHHHHHHHH
Confidence 33347999999999999999999998876
No 88
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=30.16 E-value=6.7e+02 Score=26.40 Aligned_cols=70 Identities=19% Similarity=0.385 Sum_probs=38.9
Q ss_pred CCccceEE--CCEEEEEEeeCCCCCCCCCcEEEEEEecCccc---eEEcCccCCCCCc-cCCCCeEeeeEEEccCCcEEE
Q 006523 132 DPNGPLFY--KGWYHLFYQYNPDSAVWGNITWGHAVSADLIH---WLYLPIAMVPDQW-YDINGVWTGSATILPDGQIVM 205 (642)
Q Consensus 132 DPnG~~y~--~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvh---W~~~p~AL~Pd~~-~D~~Gv~SGSavv~~dG~~~~ 205 (642)
-|. ++|+ +..+.|.||+.+. .....+|+|.-+ |... -.|..+.- -...|-..--+ |-++-.+||
T Consensus 78 AP~-vFYFaPk~~W~L~yQwg~~-------~fsY~Ts~DptnpngWSap-q~lf~g~i~~~~~g~iD~~v-I~D~~n~yL 147 (271)
T PF03664_consen 78 APQ-VFYFAPKNIWYLAYQWGPA-------AFSYSTSSDPTNPNGWSAP-QPLFSGSISGSGTGPIDQWV-ICDDTNMYL 147 (271)
T ss_pred cce-EEEecCCcEEEEEEecCCC-------cceeecCCCCCCCccCCCC-cccccccccCCCCCceeeEE-EecCCceEE
Confidence 465 6666 6789999997642 245678888765 7532 22222210 01123333333 334556888
Q ss_pred EEeccC
Q 006523 206 LYTGST 211 (642)
Q Consensus 206 ~YTG~~ 211 (642)
|+++..
T Consensus 148 Ffa~Dn 153 (271)
T PF03664_consen 148 FFAGDN 153 (271)
T ss_pred EEcCCC
Confidence 988864
No 89
>PF10898 DUF2716: Protein of unknown function (DUF2716); InterPro: IPR020323 This entry represents a group of uncharacterised proteins.
Probab=30.07 E-value=34 Score=32.72 Aligned_cols=36 Identities=25% Similarity=0.599 Sum_probs=27.4
Q ss_pred cccccceeeeecCCCCccCC----ccceEECCEEEEEEee
Q 006523 114 FTWQRTSFHFQPEKNWMNDP----NGPLFYKGWYHLFYQY 149 (642)
Q Consensus 114 ~~w~Rp~yHf~P~~gwmNDP----nG~~y~~G~YHLFYQ~ 149 (642)
|.||-+.|-|.|..---.|+ .-++|=||-||+|.+-
T Consensus 81 LDWQH~cy~~~P~~~~~~~e~~~W~vpv~PdGDYyfF~~~ 120 (143)
T PF10898_consen 81 LDWQHECYWFNPHRHAEKDEFGEWPVPVYPDGDYYFFIDK 120 (143)
T ss_pred EecCCCCEEEChhhccccccCCCccccccCCCCeEEEEec
Confidence 68999999999866544333 2367779999999873
No 90
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=27.77 E-value=4.6e+02 Score=30.20 Aligned_cols=94 Identities=18% Similarity=0.076 Sum_probs=56.5
Q ss_pred eEECCEEEEEEeeCCCCCCCCCc-EEEEEEecCccceEEc-C-ccC-CCCCccCCCCeEeeeEEEccCCcEEEEEeccCC
Q 006523 137 LFYKGWYHLFYQYNPDSAVWGNI-TWGHAVSADLIHWLYL-P-IAM-VPDQWYDINGVWTGSATILPDGQIVMLYTGSTD 212 (642)
Q Consensus 137 ~y~~G~YHLFYQ~nP~~~~wG~~-~WGHA~S~DLvhW~~~-p-~AL-~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~ 212 (642)
+.++|.--|||..|-....+.+. .-.-|.|+|.++++.. + +.+ .|+. + ..-....=++.+.+|+.+|+--+...
T Consensus 107 V~~~~~l~lfytg~v~~~~~~r~~~Q~iA~s~dg~~f~K~~~~~i~~~p~~-~-t~hFRDPKv~w~~~~~~~~mlgAq~~ 184 (486)
T COG1621 107 VVDDGNLSLFYTGNVRDSNGIRQQTQCIAYSEDGGTFEKYSGNPIIDQPEG-Y-TPHFRDPKVVWDEGGKWWMMLGAQGE 184 (486)
T ss_pred EEeCCcEEEEEccceeccCCcceeEEEEEEEcCCCceEeccCCceecCCCc-c-cccCCCCcccccCCCcEEEEEEEecC
Confidence 44688899999877664444443 5677999999999873 3 333 2332 1 22234444455677887777544433
Q ss_pred CccceEEEEEEcCCCCCCceeEEEc
Q 006523 213 KSVQVQNLAYPADPSDPLLLDWVKY 237 (642)
Q Consensus 213 ~~~q~q~lA~S~D~~d~ll~~w~K~ 237 (642)
+..-.+.+-.|.| |++|+..
T Consensus 185 ~~~g~i~lY~S~D-----L~~W~~~ 204 (486)
T COG1621 185 DLKGTILLYESDD-----LKNWQFT 204 (486)
T ss_pred CCCceEEEEeCCC-----ccCcEEE
Confidence 2222344444555 5899986
No 91
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=26.46 E-value=1.1e+02 Score=28.00 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=23.8
Q ss_pred eeeccCCeEEEEEEEeCCeEEEEEeCCceE
Q 006523 563 VPVLQGEKLSMRILVDHSIVESFGQGGRTV 592 (642)
Q Consensus 563 ~pvl~~e~~~LrI~VD~S~vEvF~n~Gr~~ 592 (642)
.|...++.++|+|.+..+..+|++| |...
T Consensus 77 ~pf~~g~~F~i~I~~~~~~f~I~vn-g~~~ 105 (133)
T PF00337_consen 77 FPFQPGQPFEIRIRVEEDGFKIYVN-GKHF 105 (133)
T ss_dssp TSSTTTSEEEEEEEEESSEEEEEET-TEEE
T ss_pred eeecCCceEEEEEEEecCeeEEEEC-CeEE
Confidence 4555688999999999999999999 4443
No 92
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=24.56 E-value=3.3e+02 Score=25.87 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=35.4
Q ss_pred cCCeEEEEEEEeCCeEEEEEeCCceEEEEeeecCcccc--CccEEEEEecCCCceEEEEEEE
Q 006523 567 QGEKLSMRILVDHSIVESFGQGGRTVITSRIYPTKAIY--GAARLFLFNNATGVNVKATLKI 626 (642)
Q Consensus 567 ~~e~~~LrI~VD~S~vEvF~n~Gr~~~TsRvYP~~~~~--~~~~i~lf~~~~~~~v~~~l~i 626 (642)
.++-.+++|.+..+.|.+|+| |+.+++..- +..... ..-.|-|...++....+ +|+|
T Consensus 126 ~~~W~~~~I~~~g~~i~v~vn-G~~v~~~~d-~~~~~~~~~~G~Igl~~~~~~~~fr-Ni~I 184 (185)
T PF06439_consen 126 PGEWNTVRIVVKGNRITVWVN-GKPVADFTD-PSFPYSNPTKGPIGLQTHGSEVQFR-NIKI 184 (185)
T ss_dssp TTSEEEEEEEEETTEEEEEET-TEEEEEEET-TSHHHHHHSSBEEEEECSSSTEEEE-EEEE
T ss_pred CCceEEEEEEEECCEEEEEEC-CEEEEEEEc-CCCCCCCCCceEEEEEeCCCeEEEE-EEEE
Confidence 367789999999999999999 677776654 222100 23356665555443222 5544
No 93
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.91 E-value=77 Score=29.45 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=5.1
Q ss_pred CCEEEEEEee
Q 006523 140 KGWYHLFYQY 149 (642)
Q Consensus 140 ~G~YHLFYQ~ 149 (642)
+|.||--+..
T Consensus 81 ~g~~~~~~~~ 90 (130)
T PF12273_consen 81 QGNFHPNPGP 90 (130)
T ss_pred CCCCCCCCCC
Confidence 4556655443
No 94
>PF12111 PNPase_C: Polyribonucleotide phosphorylase C terminal; InterPro: IPR021968 PNPase regulates the expression of small non-coding RNAs that control expression of outer-membrane proteins. The enzyme also affects complex processes, such as the tissue-invasive virulence of Salmonella enterica and the regulation of a virulence-factor secretion system in Yersinia. In Escherichia coli, PNPase is involved in the quality control of ribosomal RNA precursors and is required for growth following cold shock. This family contains the C-terminal protomer domain of the PNPase core. The function of the C-terminal protomer is to catalyse phosphorolysis through its two active sites [].; PDB: 3H1C_S 3GCM_F 3GME_D.
Probab=22.16 E-value=30 Score=25.84 Aligned_cols=11 Identities=36% Similarity=0.887 Sum_probs=0.0
Q ss_pred ccccceeeeec
Q 006523 115 TWQRTSFHFQP 125 (642)
Q Consensus 115 ~w~Rp~yHf~P 125 (642)
+||||.|.|.-
T Consensus 7 ~W~rp~y~F~G 17 (39)
T PF12111_consen 7 EWQRPAYYFYG 17 (39)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 69999999864
Done!