Query 006525
Match_columns 642
No_of_seqs 137 out of 653
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 00:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278 Endosomal membrane pro 100.0 2E-204 5E-209 1616.5 58.0 627 2-642 2-628 (628)
2 KOG1277 Endosomal membrane pro 100.0 5E-166 1E-170 1291.1 43.5 554 34-642 29-593 (593)
3 PF02990 EMP70: Endomembrane p 100.0 6E-153 1E-157 1283.1 40.5 517 59-600 1-521 (521)
4 PF11368 DUF3169: Protein of u 86.6 6.8 0.00015 40.4 11.2 38 415-459 199-236 (248)
5 PF12670 DUF3792: Protein of u 81.7 4.3 9.4E-05 37.0 6.5 78 345-426 6-83 (116)
6 KOG2568 Predicted membrane pro 73.2 2.1 4.5E-05 48.5 2.1 146 337-529 265-418 (518)
7 PRK11339 abgT putative aminobe 64.9 19 0.00041 41.2 7.5 88 350-440 265-363 (508)
8 PF13347 MFS_2: MFS/sugar tran 59.3 55 0.0012 35.9 9.9 82 321-408 208-291 (428)
9 PF07331 TctB: Tripartite tric 56.1 40 0.00086 31.1 6.9 24 404-428 109-132 (141)
10 PF05297 Herpes_LMP1: Herpesvi 56.0 3.8 8.1E-05 42.8 0.0 34 398-431 126-159 (381)
11 PF06570 DUF1129: Protein of u 55.6 64 0.0014 32.3 8.8 45 358-405 91-135 (206)
12 PF03806 ABG_transport: AbgT p 55.1 1.1E+02 0.0023 35.2 11.1 166 278-470 202-401 (502)
13 PF02990 EMP70: Endomembrane p 54.2 2.5E+02 0.0055 32.3 14.4 122 503-632 334-481 (521)
14 PF06609 TRI12: Fungal trichot 48.6 2.5E+02 0.0054 33.1 13.2 63 348-419 143-205 (599)
15 PF08055 Trp_leader1: Tryptoph 46.8 8.7 0.00019 22.9 0.5 8 564-571 6-13 (18)
16 COG5393 Predicted membrane pro 46.3 27 0.00058 32.0 3.8 51 352-405 48-109 (131)
17 COG2271 UhpC Sugar phosphate p 43.9 2.5E+02 0.0054 31.7 11.6 159 285-471 186-372 (448)
18 KOG1278 Endosomal membrane pro 43.1 4.4E+02 0.0096 30.7 13.4 112 512-630 408-544 (628)
19 COG3112 Uncharacterized protei 40.2 21 0.00045 32.2 2.1 46 27-72 54-105 (121)
20 KOG0569 Permease of the major 39.6 87 0.0019 35.8 7.5 210 306-545 222-450 (485)
21 PF06570 DUF1129: Protein of u 38.1 84 0.0018 31.4 6.5 119 499-634 77-200 (206)
22 TIGR00893 2A0114 d-galactonate 34.3 1.4E+02 0.0031 30.9 7.9 24 385-408 259-282 (399)
23 TIGR00895 2A0115 benzoate tran 34.1 54 0.0012 34.5 4.6 26 382-407 290-315 (398)
24 TIGR02973 nitrate_rd_NapE peri 34.0 33 0.00071 25.8 2.0 35 406-440 2-36 (42)
25 TIGR00881 2A0104 phosphoglycer 33.3 1.3E+02 0.0028 31.2 7.4 21 384-404 259-279 (379)
26 PF12823 DUF3817: Domain of un 31.4 19 0.0004 31.6 0.4 26 493-518 62-87 (92)
27 PF12271 Chs3p: Chitin synthas 30.7 6.9E+02 0.015 26.7 14.3 121 350-471 118-246 (293)
28 TIGR00819 ydaH p-Aminobenzoyl- 29.8 2.1E+02 0.0045 33.0 8.5 51 349-400 266-328 (513)
29 PF06796 NapE: Periplasmic nit 28.5 37 0.0008 27.1 1.6 35 405-439 14-48 (56)
30 TIGR02972 TMAO_torE trimethyla 27.4 40 0.00086 25.9 1.5 35 405-439 6-40 (47)
31 TIGR00894 2A0114euk Na(+)-depe 27.4 1.6E+02 0.0034 32.5 7.1 26 376-401 300-325 (465)
32 PF05688 DUF824: Salmonella re 26.3 59 0.0013 25.0 2.3 30 37-66 7-36 (47)
33 PLN00028 nitrate transmembrane 26.2 1E+02 0.0023 34.5 5.4 33 373-405 288-320 (476)
34 COG2814 AraJ Arabinose efflux 26.0 4.4E+02 0.0094 29.4 10.0 68 332-403 205-273 (394)
35 TIGR00901 2A0125 AmpG-related 25.9 2E+02 0.0043 30.2 7.3 21 389-409 257-277 (356)
36 PRK12307 putative sialic acid 25.5 2.6E+02 0.0057 30.1 8.3 25 382-406 271-295 (426)
37 PRK11273 glpT sn-glycerol-3-ph 24.0 1E+02 0.0022 34.1 4.7 21 384-404 296-316 (452)
38 COG0472 Rfe UDP-N-acetylmuramy 23.8 8.1E+02 0.018 26.3 11.4 55 418-472 141-204 (319)
39 PF14093 DUF4271: Domain of un 22.7 7.4E+02 0.016 24.4 11.2 16 386-401 89-104 (208)
40 PRK09546 zntB zinc transporter 22.2 60 0.0013 34.7 2.4 28 448-475 262-289 (324)
41 COG1575 MenA 1,4-dihydroxy-2-n 21.4 3.8E+02 0.0083 28.8 8.0 43 288-330 45-87 (303)
42 COG2917 Intracellular septatio 21.3 2.7E+02 0.0059 27.4 6.3 54 404-462 111-167 (180)
43 KOG2290 Rhomboid family protei 21.1 6.6E+02 0.014 28.6 9.8 67 349-415 517-602 (652)
44 smart00767 DCD DCD is a plant 20.7 50 0.0011 30.9 1.2 71 48-131 33-110 (132)
No 1
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-204 Score=1616.50 Aligned_cols=627 Identities=66% Similarity=1.160 Sum_probs=590.3
Q ss_pred CCccccchhHHHHHHHHHHHHhhccceeecCCCCCCCCCCCCeEEEEEeccccCCCCcccccccCCCcCCCCCcCCCCCc
Q 006525 2 KSRTRSTSATTAIVTFVVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKTQLPYSYYSIPYCRPKKIVDSAENL 81 (642)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~pg~~p~~Y~~Gd~V~v~vNkl~s~~~~~~y~Yy~lpfC~p~~~~~~~~sl 81 (642)
..+.|+..+.. .++++.++.+.+.+||+||++|..|++||+|+++|||++|.++|.||+||++|||+|+++++++|||
T Consensus 2 ~~~~~~~~~~~--~~ll~~~~~~~~~~FylpG~aPv~f~~gd~i~l~vnklts~~t~lpY~YY~~~Fc~p~~i~~~~EnL 79 (628)
T KOG1278|consen 2 LRPKRSSRTLL--ALLLVSLLLSTSSAFYLPGVAPVNFCSGDPIELKVNKLTSSRTQLPYEYYSLPFCRPEKIKKQSENL 79 (628)
T ss_pred CcccchhhHHH--HHHHHHHHHhcccceecCCcCCccCCCCCceEEEEEEeeccccccCcccccccccCccccCCcccch
Confidence 34455544433 2233334445588999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceeeCCeEEEeccccccccceeeecCHHHHHHHHHHHHhcceEEEEEecceeccccccccCCCCeeeecCccc
Q 006525 82 GEVLRGDRIENSPYVFKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHV 161 (642)
Q Consensus 82 Ge~L~Gdr~~~S~y~i~f~~~~~c~~lC~~~~~~~~~~~l~~~I~~~Y~~~~~iD~LPv~~~~~~~~~~~~~~y~~Gfpl 161 (642)
||+|+|||++||||+++|++|++|+.+|+.++++++++.++|+|+++|++||++||||++.+.... ++++++|++|||+
T Consensus 80 GeVl~GDRi~nSPy~~~m~e~~~C~~lC~~k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~-~~~~~~y~~Gfpl 158 (628)
T KOG1278|consen 80 GEVLRGDRIENSPYKFKMLENQPCETLCATKLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERS-DDGKVYYGTGFPL 158 (628)
T ss_pred hceeccCcccCCCceEecccCCcchhhhcccCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeec-CCCceEeccCccc
Confidence 999999999999999999999999999999999999999999999999999999999998766542 3478999999999
Q ss_pred cccccccCCCCCcEEEeeeEEEEEEEecCCCCCceEEEEEEEEeeeeeccccCCcccccccccCCCCCCccccCCCCccc
Q 006525 162 GLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNTPQE 241 (642)
Q Consensus 162 G~~~~~~~~~~~~~yL~NH~~f~I~yn~~~~~~~~~IVg~~v~p~S~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~ 241 (642)
|+.+ .++.+++|++||++|+|+||+.+ +++||||||||+|+|++|++++.++++ ....|+.+.++..+++
T Consensus 159 G~~~---~~~~~~~y~~NHl~~~i~yH~~~-~~~~riVgfeV~P~Si~~~~~~~~~~~-~~~~c~~~~~~~~~~e----- 228 (628)
T KOG1278|consen 159 GFKG---PKDEDKYYLHNHLDFVIRYHRDD-NDKYRIVGFEVKPVSIKHEHEKGDSKN-SLPTCSIPEKPLELDE----- 228 (628)
T ss_pred eecc---CCCccceeEeeeEEEEEEEEecC-CCceEEEEEEEEeeeeecccCCCcccc-cCCcccCCCCccccCC-----
Confidence 9984 22556789999999999999887 567999999999999999876654444 6678887766554443
Q ss_pred cCCCcEEEEEEEEEEeecccccchhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhh
Q 006525 242 VAENKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEA 321 (642)
Q Consensus 242 ~~~~~~i~fTYSV~w~~s~~~w~~Rwd~yl~~~~~~ihw~SIiNS~~ivl~L~~~v~~Il~R~l~~D~~~yn~~~~~~~~ 321 (642)
.+++++.|||||+|+|+|++|++|||.|+++.+.|||||||+||++||+||+++|++|++||||||++|||++|.|||+
T Consensus 229 -~~~~~i~fTYsV~f~esdi~WasRWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~~d~ 307 (628)
T KOG1278|consen 229 -GEETEIVFTYSVKFEESDIKWASRWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLDDDA 307 (628)
T ss_pred -CCceEEEEEEEEEEEeccCcchhhHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccchhhh
Confidence 3367799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCceEEeccccCCCCCccceeeeecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHH
Q 006525 322 QEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLY 401 (642)
Q Consensus 322 ~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~l~p~~rg~l~t~~i~~y~~~~~isGY~S~~~y 401 (642)
|||+|||+|||||||||+++|+||++||+|+|+++|+++++++|++|+++|++||+++|+++++|+++|++|||+|+|+|
T Consensus 308 ~Ee~GWKLVhGDVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rly 387 (628)
T KOG1278|consen 308 QEESGWKLVHGDVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLY 387 (628)
T ss_pred hhhcceEEeecccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccchhhhhhhccchhhHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhccchhhhhhhcccCCCCCCCc
Q 006525 402 KLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPV 481 (642)
Q Consensus 402 k~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g~k~~~~~~P~ 481 (642)
|+++|++||+++++|++++||+++++++++|++.|+++||+|+||+|++++++||++||+||+++|+++|+|++++|+|+
T Consensus 388 k~~~g~~wk~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~Pv 467 (628)
T KOG1278|consen 388 KTFKGREWKRNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPV 467 (628)
T ss_pred hhhcCCcchhhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcccccchhhhcccccccchhhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhHHhhhhhcccc
Q 006525 482 KTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLC 561 (642)
Q Consensus 482 ~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~S~W~~~~yy~fgfL~~~~iil~i~~a~vsI~~tY~~L~ 561 (642)
||||||||||+||||+++++.+++||++||++|||||+||++|+|.+|+||+||||+++++||+++|||+||++||+|||
T Consensus 468 rTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC 547 (628)
T KOG1278|consen 468 RTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEISIVLTYFQLC 547 (628)
T ss_pred ccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeecccCchhHHHHHHHHhhheeeeeeccceeehhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccC
Q 006525 562 SEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKI 641 (642)
Q Consensus 562 ~Edy~WwWrSF~~~gs~~~y~f~Ysi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~GtiGflas~~Fv~~IY~~iK~ 641 (642)
+||||||||||++||++|+|+|+||++|+++|++++|++++++|||||++++++++|+||||||+||+|||||||+++|+
T Consensus 548 ~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~Fv~kIYssvKi 627 (628)
T KOG1278|consen 548 AEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAAFWFVRKIYSSVKI 627 (628)
T ss_pred hcccceeeeeeeccCcchhhHHHHHHhhhheeeeecccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 006525 642 D 642 (642)
Q Consensus 642 D 642 (642)
|
T Consensus 628 D 628 (628)
T KOG1278|consen 628 D 628 (628)
T ss_pred C
Confidence 8
No 2
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-166 Score=1291.12 Aligned_cols=554 Identities=38% Similarity=0.792 Sum_probs=527.4
Q ss_pred CCCCCCCCCCeEEEEEeccccC-CCCcccccccCCCcC--CCCCcCCCCCccccccCCceeeCCeEEEecccccccccee
Q 006525 34 VAPQDFVKGDELYVKVNKLTST-KTQLPYSYYSIPYCR--PKKIVDSAENLGEVLRGDRIENSPYVFKMREPQMCNVICR 110 (642)
Q Consensus 34 ~~p~~Y~~Gd~V~v~vNkl~s~-~~~~~y~Yy~lpfC~--p~~~~~~~~slGe~L~Gdr~~~S~y~i~f~~~~~c~~lC~ 110 (642)
...|+|++||+|++||||++|+ |+||+|.||+||||+ |+++++++|+|||+|.|||+..|+|+++|+.|++.+++|+
T Consensus 29 e~dh~Yk~~e~VvLw~NkVGPyhNpqETY~YfsLPfC~g~~~~i~hk~etLGEvL~G~eL~~s~y~ikF~~~v~~~v~C~ 108 (593)
T KOG1277|consen 29 ESDHRYKDGEEVVLWMNKVGPYHNPQETYRYFSLPFCSGSKESISHKHETLGEVLQGDELEFSGYEIKFRDNVEKEVYCE 108 (593)
T ss_pred ccccccccCCeeEEEEeccCCCCChhhhceeeccceecCCCcccchhhhhHHhhhCCceeeecceeeeecccCCceeeeh
Confidence 5679999999999999999998 889999999999999 4578899999999999999999999999999999999999
Q ss_pred eecCHHHHHHHHHHHHhcceEEEEEecceeccccccccCCCCeeeecCccccccccccCCCCCcEEEeeeEEEEEEEecC
Q 006525 111 LILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRD 190 (642)
Q Consensus 111 ~~~~~~~~~~l~~~I~~~Y~~~~~iD~LPv~~~~~~~~~~~~~~y~~GfplG~~~~~~~~~~~~~yL~NH~~f~I~yn~~ 190 (642)
+++++++++.+++||+|+|++||++||||+|+.+|++|++ ..++++++||+||.+|.|+||++
T Consensus 109 ~~L~~e~v~~f~~AI~~~Yyfqmy~DdlPIwGfvGe~d~~-----------------k~~~~~ky~L~thk~f~i~yn~d 171 (593)
T KOG1277|consen 109 KKLSEEKVKAFRYAIENDYYFQMYIDDLPIWGFVGEVDED-----------------KLDNEGKYYLYTHKKFEIGYNGD 171 (593)
T ss_pred hhcCHHHHHHHHHHHHhhheeeeeecCceeeeEeeeeccc-----------------cCCCCCceEEEEeeeEEEeecCc
Confidence 9999999999999999999999999999999999985432 11367789999999999999998
Q ss_pred CCCCceEEEEEEEEeeeeeccccCCcccccccccCCCCCCccccCCCCccccCCCcEEEEEEEEEEeecccccchhhhhh
Q 006525 191 IQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNTPQEVAENKEIIFTYDVEFQESDVKWASRWDAY 270 (642)
Q Consensus 191 ~~~~~~~IVg~~v~p~S~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~y 270 (642)
|||.++++.. . ..++.++..+++||||+|+|+++++++|.|+|
T Consensus 172 ------rii~vnlt~~----~---------------------------~v~L~~~~~~~~tYsV~W~~t~v~f~~rfdky 214 (593)
T KOG1277|consen 172 ------RIIDVNLTTH----G---------------------------LVDLRPDKKLTFTYSVKWKETEVEFEKRFDKY 214 (593)
T ss_pred ------eEEEEEeeec----c---------------------------cccCCCCCCCceEEEEEeeeccCcHHHHhHhh
Confidence 8999999861 1 12234566899999999999999999999999
Q ss_pred ccC--CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhh-----hhhhhhhcCceEEeccccCCCCCccc
Q 006525 271 LLM--SDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELET-----QEEAQEETGWKLVHGDVFRPPTNSDL 343 (642)
Q Consensus 271 l~~--~~~~ihw~SIiNS~~ivl~L~~~v~~Il~R~l~~D~~~yn~~~~-----~~~~~ee~GWKlvhgDVFR~P~~~~l 343 (642)
++. .+++||||||+||+++|+||+|+|++||+|+||||++||+++|+ |.|+|||.|||+|||||||||+|+.|
T Consensus 215 ld~~ff~h~IHWfSIfNSfmmVifLvGlvamILMRtLrnDyarY~~dee~~d~~d~d~~~E~GWK~vHgDVFR~p~~~~L 294 (593)
T KOG1277|consen 215 LDPSFFPHRIHWFSIFNSFMMVIFLVGLVAMILMRTLRNDYARYAKDEEALDDMDRDDQEEYGWKQVHGDVFRFPSHPLL 294 (593)
T ss_pred cccccccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccccccccccccceeeecccccCCCccHH
Confidence 974 47889999999999999999999999999999999999998754 34789999999999999999999999
Q ss_pred eeeeecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhhH
Q 006525 344 LCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGI 423 (642)
Q Consensus 344 ls~lvG~G~Qll~~~~~~l~~a~~g~l~p~~rg~l~t~~i~~y~~~~~isGY~S~~~yk~~~g~~W~~~~~lt~~l~P~~ 423 (642)
||+++|+|+|++..+++++++|++|.+++. ||++++++|++|+++|.++||+||.+|.+.||++|.|++++|++++|++
T Consensus 295 fsa~lGsG~Qlf~l~~~ii~~Alvg~fy~~-rGal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wik~m~lta~Lfp~~ 373 (593)
T KOG1277|consen 295 FSAVLGSGAQLFTLVLIIIMLALVGVFYTE-RGALLSAAIVVYALTSPINGYVSGSFYARLGGRRWIKNMLLTASLFPVP 373 (593)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhcccccccccceeeehhccHHHHHHHHHHhhhhhHH
Confidence 999999999999999999999999999986 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhccchhhhhhhcccC-CCCCCCcccCCCCCCCCCCCcccccchh
Q 006525 424 VSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKK-PAIEDPVKTNKIPRQIPEQAWYMNPIFS 502 (642)
Q Consensus 424 ~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g~k~-~~~~~P~~~n~ipR~IP~~~~y~~~~~~ 502 (642)
+++.++++|+++|++++++|+||+|++.++++|++|..||+++|++.|.++ .+++.|||++++||+||++|||+++.+.
T Consensus 374 ~~~t~~~~N~vai~y~at~AlPfgt~v~v~~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~ 453 (593)
T KOG1277|consen 374 VFGTAFLLNTVAIAYGATAALPFGTIVVVLLIWLFVISPLTVLGGIAGKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVI 453 (593)
T ss_pred HHHHHHHHHHHHHHhccccccCccchHHHHHHHHHHhchHHHcccccccccccCCCCCcccccCCCCCCCccccccchHH
Confidence 999999999999999999999999999999999999999999999999874 5789999999999999999999999999
Q ss_pred hhcccccccchhhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhHHhhhhhccccCCCCceeeeeecccCchhHHH
Q 006525 503 ILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYL 582 (642)
Q Consensus 503 ~l~~G~lPF~~i~iEl~~i~~S~W~~~~yy~fgfL~~~~iil~i~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~ 582 (642)
+++||+|||++||||+||||+|+|.+++||+|||++++++||+++++||||++|||||++||||||||||+++||+|+|+
T Consensus 454 ~~~gG~LPFgsIfIEmYfIFtSfW~ykiYyvYgfm~lVf~IL~iVtvcvTIv~TYFlLnaEDyrW~WtSfls~~ST~~yv 533 (593)
T KOG1277|consen 454 MLMGGFLPFGSIFIEMYFIFTSFWGYKIYYVYGFMFLVFVILLIVTVCVTIVLTYFLLNAEDYRWWWTSFLSAGSTALYV 533 (593)
T ss_pred HHhhccCccchhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccceeeeeeeeccccceeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhheeeeeeccceeehhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccCC
Q 006525 583 FLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 642 (642)
Q Consensus 583 f~Ysi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~GtiGflas~~Fv~~IY~~iK~D 642 (642)
++||+|||++|++|+|+.|+.+|||||+++|.++|+|||||||.++..||||||+++|+|
T Consensus 534 y~Ys~yYy~~ktkMsG~fQTsfyFGYm~~f~~~lgim~Gtigy~gt~~FVR~IY~nvK~d 593 (593)
T KOG1277|consen 534 YLYSFYYYFFKTKMSGLFQTSFYFGYMAVFCYALGLMCGTIGYVGTLLFVRKIYRNVKID 593 (593)
T ss_pred hhhHHHHHhhhccccchhhhhhhhHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=5.9e-153 Score=1283.07 Aligned_cols=517 Identities=56% Similarity=1.094 Sum_probs=490.1
Q ss_pred cccccccCCCcCCCC-CcCCCCCccccccCCceeeCCeEEEeccccccccceeeecCHHHHHHHHHHHHhcceEEEEEec
Q 006525 59 LPYSYYSIPYCRPKK-IVDSAENLGEVLRGDRIENSPYVFKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDN 137 (642)
Q Consensus 59 ~~y~Yy~lpfC~p~~-~~~~~~slGe~L~Gdr~~~S~y~i~f~~~~~c~~lC~~~~~~~~~~~l~~~I~~~Y~~~~~iD~ 137 (642)
+|||||+||||+|++ .+++++||||+|+|||+++|||+++|++|++|+.+|+++++++|+++++++|+|+|++||+|||
T Consensus 1 l~Y~Yy~lPfC~P~~~~~~~~~slGevL~Gdr~~~S~y~i~f~~~~~c~~lC~~~l~~~~~~~l~~~I~~~Y~~~~~vD~ 80 (521)
T PF02990_consen 1 LPYDYYDLPFCRPEEGIEHKSESLGEVLRGDRIQNSPYEIKFLQNVTCKVLCKKTLTKEDVKKLKEAIENNYRVEMYVDD 80 (521)
T ss_pred CCccccCCCCcCCCCccccccCCHHHHhccCceecCceEEEEecCcchhhccCccCCHHHHHHHHHHHHHhheeeEEecC
Confidence 599999999999996 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccccccccCCCCeeeecCccccccccccCCCCCcEEEeeeEEEEEEEecCCCCCceEEEEEEEEeeeeeccccCCcc
Q 006525 138 LPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWN 217 (642)
Q Consensus 138 LPv~~~~~~~~~~~~~~y~~GfplG~~~~~~~~~~~~~yL~NH~~f~I~yn~~~~~~~~~IVg~~v~p~S~~~~~~~~~~ 217 (642)
||+++..++. ++....|..|+|+|.. +++++|||||++|+|+||+++ ++++|||||||+|+|++|.
T Consensus 81 LP~~~~~~~~-~~~~~~y~~G~~~g~~------~~~~~~l~NH~~f~I~Yn~~~-~~~~~IVgf~v~p~Si~~~------ 146 (521)
T PF02990_consen 81 LPIAGFIGSV-DGCDKGYPIGFPLGFK------DDNKYYLYNHLDFTIRYNQES-NGDYRIVGFEVTPRSIDHS------ 146 (521)
T ss_pred ceEEEEeccc-CCcceecCCCcccCcc------cCCcceeEeEEEEEEEEECCC-CCceEEEEEEEEeccccCc------
Confidence 9999998863 2235778889998876 678899999999999999886 6669999999999999886
Q ss_pred cccccccCCCC-CCccccCCCCccccCCCcEEEEEEEEEEeecccccchhhhhhcc-CCCCcchhhhHHHHHHHHHHHHH
Q 006525 218 EKTRLTTCDPH-SKHTVVNSNTPQEVAENKEIIFTYDVEFQESDVKWASRWDAYLL-MSDDQIHWFSIVNSLMIVLFLSG 295 (642)
Q Consensus 218 ~~~~~~~C~~~-~~~~~~~~~~~~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~yl~-~~~~~ihw~SIiNS~~ivl~L~~ 295 (642)
+|+.+ .++..+++ + ++..+|+|||||+|++++++|++|||+|++ ..++++||+||+||+++|++|++
T Consensus 147 ------~C~~~~~~~~~l~~-~----~~~~~i~fTYSV~w~~s~~~w~~Rwd~Yl~~~~~~~ihw~SiiNS~iivl~L~~ 215 (521)
T PF02990_consen 147 ------TCPGNESSPQELPE-D----KEADNITFTYSVKWEESDVPWASRWDKYLDSMFDSQIHWFSIINSFIIVLFLSG 215 (521)
T ss_pred ------cccccCCCCeeccC-C----CcccEEEEEEEEEEEecCCchhhccccccccccCCceEEEeHHHHHHHHHHHHH
Confidence 57754 23333332 1 112379999999999999999999999998 77899999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhcchhhhhhhhhhcCceEEeccccCCCCCccceeeeecchhHHHHHHHHHHHHHHhhccCCCCc
Q 006525 296 MVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNR 375 (642)
Q Consensus 296 ~v~~Il~R~l~~D~~~yn~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~l~p~~r 375 (642)
+|++|++|++|||++|||+++++||++||+|||+|||||||||+|+++||+++|+|+|+++|+++++++|++|+++|++|
T Consensus 216 ~v~~Il~R~l~~D~~~y~~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~r 295 (521)
T PF02990_consen 216 LVAIILLRTLRRDISRYNDEDSEEDDQEESGWKLVHGDVFRPPKHPMLLSALVGTGIQLLFMALVTLFFAALGFLSPNNR 295 (521)
T ss_pred HHHHHHHHHhhcccccccccccccccccccchhhhhHHHhcCcCCchHHHhHhcchhhhhHHHHHHHHHHHhhhccccCc
Confidence 99999999999999999999887888999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhhHHHHHHHHHHHHHhhccCCCccChhHHHHHHHH
Q 006525 376 GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVL 455 (642)
Q Consensus 376 g~l~t~~i~~y~~~~~isGY~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~l 455 (642)
|+++++++++|+++|++|||+|||+||+++|++||+++++|++++|++++++++++|+++|.++||+|+||+|++.++++
T Consensus 296 g~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~aipf~t~~~l~~l 375 (521)
T PF02990_consen 296 GSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSILTSLLFPGILFSIFFILNFIAWSYGSSSAIPFGTILFLIAL 375 (521)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchhhhhhhcccCCCC-CCCcccCCCCCCCCCCCcccccchhhhcccccccchhhHHHHHHHHhhhcchhHHHH
Q 006525 456 WFGISVPLVYVGSFVGFKKPAI-EDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIF 534 (642)
Q Consensus 456 w~~v~~PL~~iG~~~g~k~~~~-~~P~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~S~W~~~~yy~f 534 (642)
|++|++||+++||++|+|+++. ++|||+|+|||+||+||||+++++.++++|++||++|++||+||++|+|.+++||+|
T Consensus 376 w~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~~y~~f 455 (521)
T PF02990_consen 376 WFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQIPPQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWSNKFYYLF 455 (521)
T ss_pred HHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcCCCCccccCCccceeecchHHHHHHHHHHHHHHHHhhcCcceEEe
Confidence 9999999999999999999888 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhccccCCCCceeeeeecccCchhHHHHHHHHhhheeeeeeccce
Q 006525 535 GFLFLVFVILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLV 600 (642)
Q Consensus 535 gfL~~~~iil~i~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~f~Ysi~y~~~~~~~~g~~ 600 (642)
|||+++++|++++|||+||++||+|||+||||||||||++|||+|+|+|+||+||+++|++|+||+
T Consensus 456 gfl~~~~~ll~i~~a~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~~~~g~~ 521 (521)
T PF02990_consen 456 GFLLLVFILLIITCAEVSIILTYFQLCAEDYRWWWRSFLTGGSSGIYVFLYSIYYYFTKLSMSGFV 521 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeehhCcHHHHHHHHHHHHhhheeEEeeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999974
No 4
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=86.55 E-value=6.8 Score=40.44 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=21.5
Q ss_pred hhccchhhHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHh
Q 006525 415 RTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGI 459 (642)
Q Consensus 415 lt~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~v 459 (642)
++..++|++..++.++- . .++..+...++.+.++|+-+
T Consensus 199 ln~~ll~~~~~~l~i~s----~---~t~~~q~la~lvl~~I~iyi 236 (248)
T PF11368_consen 199 LNQYLLPILYILLFIYS----L---LTGENQLLAILVLIIIWIYI 236 (248)
T ss_pred HHHHHHHHHHHHHHHHH----H---HcCCccHHHHHHHHHHHHHH
Confidence 35466677655544332 1 23345566677777878754
No 5
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=81.71 E-value=4.3 Score=36.98 Aligned_cols=78 Identities=14% Similarity=0.277 Sum_probs=56.2
Q ss_pred eeeecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhhHH
Q 006525 345 CVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIV 424 (642)
Q Consensus 345 s~lvG~G~Qll~~~~~~l~~a~~g~l~p~~rg~l~t~~i~~y~~~~~isGY~S~~~yk~~~g~~W~~~~~lt~~l~P~~~ 424 (642)
+++-|.-.-+.++.+..++++.+=...+-+.+.+--...+.++++.+++|++++|. -+.|.|..- ..++.++-.++
T Consensus 6 ~vl~g~~~~~~~tl~~~l~~a~ll~~~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~---~~~kG~l~G-~~~Gl~y~~il 81 (116)
T PF12670_consen 6 AVLKGLLVAYIITLILLLLLALLLYFTSLSESILPWLVVIIYILSVFIGGFYAGRK---AGSKGWLHG-LLVGLLYFLIL 81 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HccchHHHH-HHHHHHHHHHH
Confidence 34556666777777778888876555566777888888999999999999999986 466888864 55554444443
Q ss_pred HH
Q 006525 425 SA 426 (642)
Q Consensus 425 ~~ 426 (642)
+.
T Consensus 82 ~l 83 (116)
T PF12670_consen 82 LL 83 (116)
T ss_pred HH
Confidence 33
No 6
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=73.22 E-value=2.1 Score=48.50 Aligned_cols=146 Identities=14% Similarity=0.266 Sum_probs=88.8
Q ss_pred CCCCccceeeeecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHH--HHHHHhhhhHHHHHHHHHhh--cCccchhh
Q 006525 337 PPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLL--LWVFMGLFAGYASARLYKLF--KGTEWKRI 412 (642)
Q Consensus 337 ~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~l~p~~rg~l~t~~i~--~y~~~~~isGY~S~~~yk~~--~g~~W~~~ 412 (642)
.|.-.+.++.+++.+=+-+.-++++++.--.|..+|.=+|.++..+.+ +|.+.+.+.|-+. .+..- ....|+..
T Consensus 265 ~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~--~~g~~se~~~~~~lf 342 (518)
T KOG2568|consen 265 SPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLAR--VIGNISELSSLLILF 342 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHHH--HhcCcccccchhhHH
Confidence 777889999999999988887776666667899999888877764332 3333444444322 11110 11112211
Q ss_pred hhhhccchhhHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhccchhhhhhhcccCCCCCCCcccCCCCCCCCC
Q 006525 413 AFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPE 492 (642)
Q Consensus 413 ~~lt~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g~k~~~~~~P~~~n~ipR~IP~ 492 (642)
.++|+.-....+..|++.|++=|+- .=++.|++-+
T Consensus 343 -----------------------------~~ip~ai~d~~f~~wIF~SL~~Tlk----------------~Lr~rRn~vK 377 (518)
T KOG2568|consen 343 -----------------------------AALPLAILDAAFIYWIFISLAKTLK----------------KLRLRRNIVK 377 (518)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH
Confidence 1344455556677888888876652 2233466655
Q ss_pred CCcccccchhhhcccccccchhhHHHHHHH----Hhhhcch
Q 006525 493 QAWYMNPIFSILIGGILPFGAVFIELFFIL----TSIWLNQ 529 (642)
Q Consensus 493 ~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~----~S~W~~~ 529 (642)
-.-|++-.-.+.++=+.-|+-|.+|.++.- +..|...
T Consensus 378 l~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~ 418 (518)
T KOG2568|consen 378 LSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKER 418 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 556666444444555556666777877754 6668765
No 7
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=64.90 E-value=19 Score=41.15 Aligned_cols=88 Identities=13% Similarity=0.232 Sum_probs=44.0
Q ss_pred chhHHHHHHHHHHHHHH--hhccCCCCcc-----hHHH----HHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhcc
Q 006525 350 TGVQFFGMMLVTMIFAL--LGFLSPSNRG-----GLMT----AMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAI 418 (642)
Q Consensus 350 ~G~Qll~~~~~~l~~a~--~g~l~p~~rg-----~l~t----~~i~~y~~~~~isGY~S~~~yk~~~g~~W~~~~~lt~~ 418 (642)
.|+-++....+.+++.. .|.+...+.| -+++ ...++|.+.|++-|++++++.+ .++..+.+.-..-
T Consensus 265 Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~GivyG~~~g~iks---~~Dv~~~m~~g~~ 341 (508)
T PRK11339 265 AGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIRR---QADLPHLMIEPMK 341 (508)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHHHHHhhhcccccC---HHHHHHHHHHHHH
Confidence 56655555444444432 5555432234 5677 5556677777777777775422 2333332222222
Q ss_pred chhhHHHHHHHHHHHHHhhccC
Q 006525 419 TFPGIVSAIFFVLNALIWGQKS 440 (642)
Q Consensus 419 l~P~~~~~i~~~lN~i~~~~~S 440 (642)
-.-+.++.++.+..++++++.|
T Consensus 342 ~m~~~ivl~F~~Aqfia~F~~s 363 (508)
T PRK11339 342 EMAGFIVMVFPLAQFVAMFNWS 363 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 2233344455566666664433
No 8
>PF13347 MFS_2: MFS/sugar transport protein
Probab=59.32 E-value=55 Score=35.90 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=45.6
Q ss_pred hhhhcCceEEeccccCCCCCccceeeeec--chhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHH
Q 006525 321 AQEETGWKLVHGDVFRPPTNSDLLCVYVG--TGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASA 398 (642)
Q Consensus 321 ~~ee~GWKlvhgDVFR~P~~~~lls~lvG--~G~Qll~~~~~~l~~a~~g~l~p~~rg~l~t~~i~~y~~~~~isGY~S~ 398 (642)
.++..++|..-..+||-|+..+++.+..- .|..+..... .+.+-..+. .+...+.....+.+.++++....+
T Consensus 208 ~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~---~y~~~~vl~---~~~~~~~~~~~~~~~~~v~~~~~~ 281 (428)
T PF13347_consen 208 QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFL---PYYFTYVLG---NEGLISIFMLIFFVASIVGSPLWG 281 (428)
T ss_pred cccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHH---HHHHHHHhc---CchhhHHHHHHHHHHHHHHHHHHH
Confidence 34556666666788888876655433222 2222222211 111211221 124455555567778888888889
Q ss_pred HHHHhhcCcc
Q 006525 399 RLYKLFKGTE 408 (642)
Q Consensus 399 ~~yk~~~g~~ 408 (642)
++-|++|.++
T Consensus 282 ~l~~r~gk~~ 291 (428)
T PF13347_consen 282 RLSKRFGKKK 291 (428)
T ss_pred HHHHHcccee
Confidence 9999887554
No 9
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=56.08 E-value=40 Score=31.12 Aligned_cols=24 Identities=17% Similarity=0.600 Sum_probs=15.1
Q ss_pred hcCccchhhhhhhccchhhHHHHHH
Q 006525 404 FKGTEWKRIAFRTAITFPGIVSAIF 428 (642)
Q Consensus 404 ~~g~~W~~~~~lt~~l~P~~~~~i~ 428 (642)
+|.++|++. +..+..+|..+..++
T Consensus 109 ~g~r~~~~~-~~~s~~~~~~i~~~F 132 (141)
T PF07331_consen 109 LGERRWLRL-LLISVVFAAVIYFVF 132 (141)
T ss_pred hCCCcHHHH-HHHHHHHHHHHHHHH
Confidence 447889876 455556666655544
No 10
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=56.05 E-value=3.8 Score=42.84 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHhhcCccchhhhhhhccchhhHHHHHHHHH
Q 006525 398 ARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVL 431 (642)
Q Consensus 398 ~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~l 431 (642)
..+.+..+..-|...+++-++++-.++++|...+
T Consensus 126 m~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L 159 (381)
T PF05297_consen 126 MWLLRELGASFWTILAFCLAFLLAIVLLIIAVLL 159 (381)
T ss_dssp ----------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888898777766665555544444443
No 11
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=55.57 E-value=64 Score=32.26 Aligned_cols=45 Identities=18% Similarity=0.498 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 006525 358 MLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFK 405 (642)
Q Consensus 358 ~~~~l~~a~~g~l~p~~rg~l~t~~i~~y~~~~~isGY~S~~~yk~~~ 405 (642)
.+.+++.+.++++++.++... .+..-++.++++|.+-..+++.+.
T Consensus 91 ~if~~~~gi~~~f~~~~~~~~---gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 91 GIFSLLFGIMGFFSPKNSNQY---GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred HHHHHHHHHHHHHhhcccccc---cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777887776332222 333334556777777666666544
No 12
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=55.11 E-value=1.1e+02 Score=35.20 Aligned_cols=166 Identities=13% Similarity=0.285 Sum_probs=77.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhh---------hhhhcCceEEeccccCCCCCccceeeee
Q 006525 278 IHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEE---------AQEETGWKLVHGDVFRPPTNSDLLCVYV 348 (642)
Q Consensus 278 ihw~SIiNS~~ivl~L~~~v~~Il~R~l~~D~~~yn~~~~~~~---------~~ee~GWKlvhgDVFR~P~~~~lls~lv 348 (642)
.+|+..+-|.+ +++.+...+--|.+...+.+|+.++++++ ++|..|=|.
T Consensus 202 ~N~yF~~aSt~---~l~~v~~~vt~kivePrl~~~~~~~~~~~~~~~~~~Lt~~EkkgLr~------------------- 259 (502)
T PF03806_consen 202 MNYYFMIASTF---VLTIVGTWVTEKIVEPRLGKYDGDADDDEIEEASSSLTPREKKGLRW------------------- 259 (502)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhhhhccccccccccccccccccccccCCHHHHHHHHH-------------------
Confidence 36666555532 33444455556777666667765532211 123344332
Q ss_pred cchhHHHHHHHHHHHHHHh---hccCCCCc-----chHHHHHHH----HHHHHhhhhHHHHHHHHHhhcCccchhhhhhh
Q 006525 349 GTGVQFFGMMLVTMIFALL---GFLSPSNR-----GGLMTAMLL----LWVFMGLFAGYASARLYKLFKGTEWKRIAFRT 416 (642)
Q Consensus 349 G~G~Qll~~~~~~l~~a~~---g~l~p~~r-----g~l~t~~i~----~y~~~~~isGY~S~~~yk~~~g~~W~~~~~lt 416 (642)
.|+-++..+.+. ++.++ +.+..... +.++...+. +|.+.|.+=|+.||++ | +.++..+.+--.
T Consensus 260 -Agi~~l~~lall-~ll~iP~~a~LR~~~tG~l~~SPf~~gIIpiI~l~F~i~GivYG~~sG~i-k--s~~Dv~~~M~~~ 334 (502)
T PF03806_consen 260 -AGIALLAFLALL-LLLLIPENAPLRSPETGSLFPSPFMKGIIPIIFLFFLIPGIVYGIASGTI-K--SDKDVVKMMSKG 334 (502)
T ss_pred -HHHHHHHHHHHH-HHHHccCCccccCCCCCcccCChHHHhHHHHHHHHHHHHHHHHhhhhcee-c--CHHHHHHHHHHH
Confidence 455555543333 33333 33432122 335554444 4444555555555543 1 123333333333
Q ss_pred ccchhhHHHHHHHHHHHHHhhccCC-------------CccChhHHHHHHHHHHHhhccchhhhhhh
Q 006525 417 AITFPGIVSAIFFVLNALIWGQKSS-------------GAVPFGTMFALIVLWFGISVPLVYVGSFV 470 (642)
Q Consensus 417 ~~l~P~~~~~i~~~lN~i~~~~~Ss-------------~aipf~ti~~l~~lw~~v~~PL~~iG~~~ 470 (642)
.--....+...++...++++++.|. .+..+..+..++.+-++.++=--++||--
T Consensus 335 m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~~~l~i~fill~a~iNLfi~S~S 401 (502)
T PF03806_consen 335 MKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLPGIPLIIGFILLTAFINLFIGSAS 401 (502)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhcch
Confidence 3333445555666667777666654 12334444444444455555445555543
No 13
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=54.24 E-value=2.5e+02 Score=32.28 Aligned_cols=122 Identities=20% Similarity=0.398 Sum_probs=75.4
Q ss_pred hhcccccccchhhHHHHHHHHhh-hcch--hHHHHHHHHHHHHHHHHHHHhHHhhhhhccccCCC---------------
Q 006525 503 ILIGGILPFGAVFIELFFILTSI-WLNQ--FYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSED--------------- 564 (642)
Q Consensus 503 ~l~~G~lPF~~i~iEl~~i~~S~-W~~~--~yy~fgfL~~~~iil~i~~a~vsI~~tY~~L~~Ed--------------- 564 (642)
++.+.++|.... =++++++.+ |.++ --..|+-++.++.++++++.-.+++..|+-...+.
T Consensus 334 ~lt~~~~P~~~~--~~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~I 411 (521)
T PF02990_consen 334 ILTSLLFPGILF--SIFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQI 411 (521)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcC
Confidence 344567777443 334455554 6554 23568888888888999999999998887743321
Q ss_pred --Cceeeeee---cccC---chhHHHHHHHHhhheeeeeeccceeehhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 006525 565 --YQWWWRSY---LTSG---SSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFT 632 (642)
Q Consensus 565 --y~WwWrSF---~~~g---s~~~y~f~Ysi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~GtiGflas~~Fv 632 (642)
-.|.=+.+ +.+| ..++|+.+|.++--+-.- +.-..||+.++..+++.+.|+.|+.+.++.-.
T Consensus 412 P~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~------~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L 481 (521)
T PF02990_consen 412 PPQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWSN------KFYYLFGFLLLVFILLIITCAEVSIILTYFQL 481 (521)
T ss_pred CCCccccCCccceeecchHHHHHHHHHHHHHHHHhhcC------cceEEehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23533333 4455 345566666554332211 12334677777778888888888888877644
No 14
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=48.64 E-value=2.5e+02 Score=33.09 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=36.9
Q ss_pred ecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccc
Q 006525 348 VGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAIT 419 (642)
Q Consensus 348 vG~G~Qll~~~~~~l~~a~~g~l~p~~rg~l~t~~i~~y~~~~~isGY~S~~~yk~~~g~~W~~~~~lt~~l 419 (642)
+|.|.|.+... +.+ -..+.+.|+.-....-+.++....++|.++.++.. ...|+++..+....
T Consensus 143 vgaG~~~~~~~----~is--El~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~ 205 (599)
T PF06609_consen 143 VGAGVQELAAL----AIS--ELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIW 205 (599)
T ss_pred HhhHHHHHHHH----HHH--HhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHH
Confidence 46777775432 122 22333556655544455556666778888777643 46899987666543
No 15
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=46.77 E-value=8.7 Score=22.90 Aligned_cols=8 Identities=38% Similarity=1.610 Sum_probs=6.0
Q ss_pred CCceeeee
Q 006525 564 DYQWWWRS 571 (642)
Q Consensus 564 dy~WwWrS 571 (642)
--||||.+
T Consensus 6 ~~nwwwta 13 (18)
T PF08055_consen 6 IQNWWWTA 13 (18)
T ss_pred ccceeeec
Confidence 45899975
No 16
>COG5393 Predicted membrane protein [Function unknown]
Probab=46.26 E-value=27 Score=31.98 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHhhcc----------CCCCcc-hHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 006525 352 VQFFGMMLVTMIFALLGFL----------SPSNRG-GLMTAMLLLWVFMGLFAGYASARLYKLFK 405 (642)
Q Consensus 352 ~Qll~~~~~~l~~a~~g~l----------~p~~rg-~l~t~~i~~y~~~~~isGY~S~~~yk~~~ 405 (642)
.|+++|..+++.|+.+|.. .|.+|= +......++|++..+.+++ +++|+.+
T Consensus 48 l~lllm~gLtl~fa~~~lmsL~vLvi~~f~~tyRl~a~~a~~~vl~vl~~i~ciW---~lrks~~ 109 (131)
T COG5393 48 LQLLLMAGLTLLFAAFGLMSLMVLVIWAFDPTYRLNAMIATTAVLLVLALIGCIW---TLRKSRK 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 4666676666666665543 466765 6777788889888888876 4555433
No 17
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=43.91 E-value=2.5e+02 Score=31.73 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh--------hcchhhhh--hhhh---hcCceEEeccccCCCCCccceeeeecch
Q 006525 285 NSLMIVLFLSGMVAMIMLRTLYRDISK--------YNELETQE--EAQE---ETGWKLVHGDVFRPPTNSDLLCVYVGTG 351 (642)
Q Consensus 285 NS~~ivl~L~~~v~~Il~R~l~~D~~~--------yn~~~~~~--~~~e---e~GWKlvhgDVFR~P~~~~lls~lvG~G 351 (642)
..++.--.++.++++++.+.+|.+=+. |.++..|+ +++| .+.|+.+..-|+|-| .+..
T Consensus 186 ~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk---~iW~------ 256 (448)
T COG2271 186 AAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNK---LIWL------ 256 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcCh---HHHH------
Confidence 445555566667777777766643221 22222221 1122 344888777788766 2221
Q ss_pred hHHHHHHHHHHHHHH--hhcc-------CCCCcchHHHHHH--HHHHH----HhhhhHHHHHHHHHhhcCccchhhhhhh
Q 006525 352 VQFFGMMLVTMIFAL--LGFL-------SPSNRGGLMTAML--LLWVF----MGLFAGYASARLYKLFKGTEWKRIAFRT 416 (642)
Q Consensus 352 ~Qll~~~~~~l~~a~--~g~l-------~p~~rg~l~t~~i--~~y~~----~~~isGY~S~~~yk~~~g~~W~~~~~lt 416 (642)
..+.-++... .|+. +....=++.++.. .+|=. +++++||.|=++ |+|+|+..+.+..
T Consensus 257 -----la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDkl---fkgrR~p~~~i~~ 328 (448)
T COG2271 257 -----LALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL---FKGRRGPMALIFM 328 (448)
T ss_pred -----HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cccccchHHHHHH
Confidence 1111222221 2222 1222223444333 33433 566677777655 6788877653221
Q ss_pred ccchhhHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhccchhhhhhhc
Q 006525 417 AITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVG 471 (642)
Q Consensus 417 ~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g 471 (642)
+...+-++.. ..+.+.-+.-....++.+=++|.-|-.++|-...
T Consensus 329 ----------~~i~~~~~~~-w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~ 372 (448)
T COG2271 329 ----------LLITASLVLY-WLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAA 372 (448)
T ss_pred ----------HHHHHHHHHH-HcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 1111111111 1222224455667777888899999977775543
No 18
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.12 E-value=4.4e+02 Score=30.67 Aligned_cols=112 Identities=18% Similarity=0.405 Sum_probs=72.0
Q ss_pred chhhHHHHHHHHh-hhcch--hHHHHHHHHHHHHHHHHHHHhHHhhhhhccccCC----------------CCceee---
Q 006525 512 GAVFIELFFILTS-IWLNQ--FYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSE----------------DYQWWW--- 569 (642)
Q Consensus 512 ~~i~iEl~~i~~S-~W~~~--~yy~fgfL~~~~iil~i~~a~vsI~~tY~~L~~E----------------dy~WwW--- 569 (642)
|+++.-. |++|. +|+++ ==--|+-++....+...++.-.+-+.-|+--+.. ..+|+=
T Consensus 408 Givf~~~-f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~ 486 (628)
T KOG1278|consen 408 GIVFAIF-FVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPI 486 (628)
T ss_pred hHHHHHH-HHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccccchh
Confidence 4444444 44555 69875 2235677777777777888888888888766443 337764
Q ss_pred eeecccCc---hhHHHHHHHHhhheeeeeeccceeehhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006525 570 RSYLTSGS---SALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFW 630 (642)
Q Consensus 570 rSF~~~gs---~~~y~f~Ysi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~GtiGflas~~ 630 (642)
.+-+.+|. -++|+.++.|+ ..+=++ |.-+.||+.++.-+++-+.|.=|+.+.++.
T Consensus 487 ~~ili~GilPFg~ifIELfFI~---~SiW~~---qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf 544 (628)
T KOG1278|consen 487 PSILIAGILPFGAIFIELFFIL---SSIWLN---QFYYMFGFLFLVFIILVVTCAEISIVLTYF 544 (628)
T ss_pred hHHHhhcccchHHHHHHHHHHH---HHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456664 34566655433 222222 666779999988888888998888888765
No 19
>COG3112 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.21 E-value=21 Score=32.24 Aligned_cols=46 Identities=22% Similarity=0.538 Sum_probs=36.9
Q ss_pred ceeecCCCCCCCCCCCCeEEEEEeccccC--CC-Cccccccc---CCCcCCC
Q 006525 27 HSFYLPGVAPQDFVKGDELYVKVNKLTST--KT-QLPYSYYS---IPYCRPK 72 (642)
Q Consensus 27 ~~f~~pg~~p~~Y~~Gd~V~v~vNkl~s~--~~-~~~y~Yy~---lpfC~p~ 72 (642)
+.+.++|..-.-+-+||+|.|..|.+.=. +. .+-+.||| |.+|-.+
T Consensus 54 ~~~~~~G~Eytl~~~geEVmVraN~L~~e~de~lE~df~yYDeESla~CG~e 105 (121)
T COG3112 54 REWQLAGHEYTLWMDGEEVMVRANQLAFEGDEELEEDFNYYDEESLALCGTE 105 (121)
T ss_pred hhheecCcEEEEEEcCceeeeecchhccccchhhhcccccccHHHHHhhchH
Confidence 36889999888889999999999999643 32 36789996 8899643
No 20
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=39.63 E-value=87 Score=35.81 Aligned_cols=210 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhhhhhhcchhhhhhhhhhcCceEEec-----------cccCCCC--CccceeeeecchhHHHH----HHHHHHHHHHhh
Q 006525 306 YRDISKYNELETQEEAQEETGWKLVHG-----------DVFRPPT--NSDLLCVYVGTGVQFFG----MMLVTMIFALLG 368 (642)
Q Consensus 306 ~~D~~~yn~~~~~~~~~ee~GWKlvhg-----------DVFR~P~--~~~lls~lvG~G~Qll~----~~~~~l~~a~~g 368 (642)
+|.+++|-..++++++.||.=+..=.. |++|-|+ .+++....+..+-|+-. ..-.+-++--.|
T Consensus 222 ~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG 301 (485)
T KOG0569|consen 222 RKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAG 301 (485)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcC
Q ss_pred ccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhhHHHHHHHHHHHHHhhccCCCccChhH
Q 006525 369 FLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGT 448 (642)
Q Consensus 369 ~l~p~~rg~l~t~~i~~y~~~~~isGY~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~t 448 (642)
+++..--..-.+.-++..+++++|.+.-=|. |+|+....-+..+.+-.+++.+...++-... +...
T Consensus 302 -~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-----gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~ 367 (485)
T KOG0569|consen 302 -FTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-----GRRPLLLISLSLMAVALLLMSIALFLSNSFG--------SWLS 367 (485)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHH
Q ss_pred HHHHHHHHHHhhccchhhhhhhcccCCCCCCCcccCCCCCCCCCCCcccccchhhhcccccccchhh--HHHHHHHHhhh
Q 006525 449 MFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVF--IELFFILTSIW 526 (642)
Q Consensus 449 i~~l~~lw~~v~~PL~~iG~~~g~k~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~--iEl~~i~~S~W 526 (642)
...+.++..++...-+=.|.+--+ |+.|.=+|. ......-+++.....+-+ .-.+..+++.|
T Consensus 368 y~~i~~~~~~~~~f~~G~gpi~~f-------------i~aELf~~~---~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~ 431 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPGPIPWF-------------IGAELFPQS---ARSAAQSVATAVNWLSNFIVGFAFPPLQNVI 431 (485)
T ss_pred HHHHHHHHHHHHhhhcCCCchhHH-------------HHHHhCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 006525 527 LNQFYYIFGFLFLVFVILI 545 (642)
Q Consensus 527 ~~~~yy~fgfL~~~~iil~ 545 (642)
+...|-+|..-...+.+.+
T Consensus 432 g~~~filF~i~~~~~~i~~ 450 (485)
T KOG0569|consen 432 GPYVFILFVIPLAIFLIYL 450 (485)
T ss_pred cchhhHHHHHHHHHHHHHH
No 21
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=38.07 E-value=84 Score=31.43 Aligned_cols=119 Identities=18% Similarity=0.347 Sum_probs=54.0
Q ss_pred cchhhhcccccccchhhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhHHhhhh--hccc--cCCCCceeeeeecc
Q 006525 499 PIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLC--YFQL--CSEDYQWWWRSYLT 574 (642)
Q Consensus 499 ~~~~~l~~G~lPF~~i~iEl~~i~~S~W~~~~yy~fgfL~~~~iil~i~~a~vsI~~t--Y~~L--~~Edy~WwWrSF~~ 574 (642)
.+..+.+-+.+-|.+++.=+.-++. .+..+--..+|++.+... . +.+-+.+... |++- +.+...+||+.+..
T Consensus 77 ~~~~~~ld~~L~~~~if~~~~gi~~-~f~~~~~~~~gi~tli~~--~-i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~ 152 (206)
T PF06570_consen 77 NPWLMALDNSLLFFGIFSLLFGIMG-FFSPKNSNQYGIITLILV--S-IVGGLVFYFIFKYIYPYKKKKKRPSWWKYILI 152 (206)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccccHHHHHHH--H-HHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 3344555555556666554544443 233211111166543222 1 2222233333 3333 34566789998864
Q ss_pred cC-chhHHHHHHHHhhheeeeeeccceeehhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 006525 575 SG-SSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRL 634 (642)
Q Consensus 575 ~g-s~~~y~f~Ysi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~GtiGflas~~Fv~~ 634 (642)
+. +..+++.++.+..++.. .++ .. ++-...+..|.+.+.+.+++-||
T Consensus 153 ~~~~~~~w~~~~~~~~~lp~-~in---p~---------l~~~~~iiig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 153 SVLAMVLWIVIFVLTSFLPP-VIN---PV---------LPPWVYIIIGVIAFALRFYLKKK 200 (206)
T ss_pred HHHHHHHHHHHHHHHHHccc-cCC---cC---------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 44 34445555544444221 111 11 22233455666766666555443
No 22
>TIGR00893 2A0114 d-galactonate transporter.
Probab=34.27 E-value=1.4e+02 Score=30.88 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=14.0
Q ss_pred HHHHHhhhhHHHHHHHHHhhcCcc
Q 006525 385 LWVFMGLFAGYASARLYKLFKGTE 408 (642)
Q Consensus 385 ~y~~~~~isGY~S~~~yk~~~g~~ 408 (642)
.+.+.+.++....+++.+.++.++
T Consensus 259 ~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 259 LPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555666666666666666554
No 23
>TIGR00895 2A0115 benzoate transport.
Probab=34.06 E-value=54 Score=34.50 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCc
Q 006525 382 MLLLWVFMGLFAGYASARLYKLFKGT 407 (642)
Q Consensus 382 ~i~~y~~~~~isGY~S~~~yk~~~g~ 407 (642)
....+.+.+.+++.+++++-+.++.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (398)
T TIGR00895 290 GGALFNFGGVIGSIIFGWLADRLGPR 315 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 34445566677777777777666543
No 24
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=33.99 E-value=33 Score=25.75 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=29.6
Q ss_pred CccchhhhhhhccchhhHHHHHHHHHHHHHhhccC
Q 006525 406 GTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKS 440 (642)
Q Consensus 406 g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~S 440 (642)
.+.|+...+++..++|.+..+....--++.|..+-
T Consensus 2 ~~El~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 2 RMELNTFLFLAAVIWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999888888888887653
No 25
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=33.27 E-value=1.3e+02 Score=31.21 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=13.0
Q ss_pred HHHHHHhhhhHHHHHHHHHhh
Q 006525 384 LLWVFMGLFAGYASARLYKLF 404 (642)
Q Consensus 384 ~~y~~~~~isGY~S~~~yk~~ 404 (642)
..+.+.+.++..+++++-+..
T Consensus 259 ~~~~~~~~~~~~~~g~l~~r~ 279 (379)
T TIGR00881 259 TLYELGGLVGTLLAGWLSDKL 279 (379)
T ss_pred HHHHHHcchhHHHHHHHHHHH
Confidence 345556667777777766644
No 26
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=31.41 E-value=19 Score=31.63 Aligned_cols=26 Identities=23% Similarity=0.676 Sum_probs=22.0
Q ss_pred CCcccccchhhhcccccccchhhHHH
Q 006525 493 QAWYMNPIFSILIGGILPFGAVFIEL 518 (642)
Q Consensus 493 ~~~y~~~~~~~l~~G~lPF~~i~iEl 518 (642)
+.|-.+.....+++|++||++...|-
T Consensus 62 ~rW~~~~~~~~llas~iPfg~f~~er 87 (92)
T PF12823_consen 62 YRWSLKRTLLALLASVIPFGTFWFER 87 (92)
T ss_pred cCCChHHHHHHHHHHcccccHHHHHH
Confidence 45667778889999999999998885
No 27
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=30.67 E-value=6.9e+02 Score=26.70 Aligned_cols=121 Identities=18% Similarity=0.204 Sum_probs=73.8
Q ss_pred chhHHHHHHHHH---HHHHHhhccCCCCcchHHHHHHHHH--HHHhhhhHHHHHHHHHhhcC---ccchhhhhhhccchh
Q 006525 350 TGVQFFGMMLVT---MIFALLGFLSPSNRGGLMTAMLLLW--VFMGLFAGYASARLYKLFKG---TEWKRIAFRTAITFP 421 (642)
Q Consensus 350 ~G~Qll~~~~~~---l~~a~~g~l~p~~rg~l~t~~i~~y--~~~~~isGY~S~~~yk~~~g---~~W~~~~~lt~~l~P 421 (642)
+++|+...+... ++-+..|+.- .+.|+..+..+.-- ++..+++||+|--..|.+.| +.-.-.....-.++|
T Consensus 118 tAi~~g~~~a~~w~Ll~Ng~vgfQl-~eDGT~~Sl~ll~~ss~~~f~~t~~isl~Tf~~w~~~~~~~~~~~Lfvl~~l~p 196 (293)
T PF12271_consen 118 TAIQIGLISATCWCLLINGFVGFQL-WEDGTPLSLWLLRGSSLILFIGTFYISLDTFKSWTGYLSPTNTIALFVLYYLLP 196 (293)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeee-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchhHHHHHHHH
Confidence 557776644333 3333556653 56777776433322 22345677777777776655 222223455566889
Q ss_pred hHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhccchhhhhhhc
Q 006525 422 GIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVG 471 (642)
Q Consensus 422 ~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g 471 (642)
++.+.+++++-.+....-=-.--|.+.++.-.+++..-++-.-.++..++
T Consensus 197 ~i~l~~Y~v~q~~lv~~vL~e~wp~g~i~~~~~fFv~gQv~~y~~S~~IC 246 (293)
T PF12271_consen 197 AIFLVIYVVLQLILVLRVLGERWPLGYILLGVFFFVAGQVFLYVFSTHIC 246 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 99999999988877665555667778877777766665555555554444
No 28
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=29.78 E-value=2.1e+02 Score=33.02 Aligned_cols=51 Identities=20% Similarity=0.473 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHHHHHHh---hccCCCCc---------chHHHHHHHHHHHHhhhhHHHHHHH
Q 006525 349 GTGVQFFGMMLVTMIFALL---GFLSPSNR---------GGLMTAMLLLWVFMGLFAGYASARL 400 (642)
Q Consensus 349 G~G~Qll~~~~~~l~~a~~---g~l~p~~r---------g~l~t~~i~~y~~~~~isGY~S~~~ 400 (642)
-.|+-++..+.+.+ +.++ |.++.... +++.....++|.+.|++.|.+++++
T Consensus 266 ~Ag~~~l~fia~l~-ll~~P~~g~LR~~~tG~l~~SPf~~~iipii~~~Fli~givyG~~~g~i 328 (513)
T TIGR00819 266 IAGVVFIAFIAAIA-LMIIPADGILRDPENGLVAGSPFIKGIVPFIFLFFALPGIAYGIATRSI 328 (513)
T ss_pred HHHHHHHHHHHHHH-HHHHcCCCcccCCCCCCccCChHHHhHHHHHHHHHHHHHHHHHhhcCcc
Confidence 35666666554333 3445 66653211 4566667777888888888887753
No 29
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=28.55 E-value=37 Score=27.08 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=29.7
Q ss_pred cCccchhhhhhhccchhhHHHHHHHHHHHHHhhcc
Q 006525 405 KGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQK 439 (642)
Q Consensus 405 ~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~ 439 (642)
+++.|+...+++..++|.+..+++..--++.|..+
T Consensus 14 k~~E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q 48 (56)
T PF06796_consen 14 KRSELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQ 48 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999998888888888754
No 30
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=27.43 E-value=40 Score=25.93 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=29.5
Q ss_pred cCccchhhhhhhccchhhHHHHHHHHHHHHHhhcc
Q 006525 405 KGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQK 439 (642)
Q Consensus 405 ~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~ 439 (642)
+.+.|+...+++..++|.+..+....--++.|..+
T Consensus 6 k~~El~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q 40 (47)
T TIGR02972 6 RSNELKALGFIIVVLFPILSVAGIGGYGFIIWMIQ 40 (47)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999888888888888754
No 31
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=27.36 E-value=1.6e+02 Score=32.53 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=12.7
Q ss_pred chHHHHHHHHHHHHhhhhHHHHHHHH
Q 006525 376 GGLMTAMLLLWVFMGLFAGYASARLY 401 (642)
Q Consensus 376 g~l~t~~i~~y~~~~~isGY~S~~~y 401 (642)
|.+.....+.-++++.++|+.+.|+.
T Consensus 300 g~~~~~~~~~~~i~~~~~g~l~d~~~ 325 (465)
T TIGR00894 300 GLLSSLPYLFAWLCSIFAGYLADFLK 325 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334455566666665544
No 32
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=26.34 E-value=59 Score=25.02 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=24.4
Q ss_pred CCCCCCCeEEEEEeccccCCCCcccccccC
Q 006525 37 QDFVKGDELYVKVNKLTSTKTQLPYSYYSI 66 (642)
Q Consensus 37 ~~Y~~Gd~V~v~vNkl~s~~~~~~y~Yy~l 66 (642)
-.=+.||.|++.|-.-.+..++.||.++.|
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~n~~f~l 36 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVPNAPFTL 36 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcCCceEEE
Confidence 345899999999988888777788887765
No 33
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=26.22 E-value=1e+02 Score=34.49 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=19.3
Q ss_pred CCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 006525 373 SNRGGLMTAMLLLWVFMGLFAGYASARLYKLFK 405 (642)
Q Consensus 373 ~~rg~l~t~~i~~y~~~~~isGY~S~~~yk~~~ 405 (642)
...|.+.+..-+.=+++.+++|+.+-|+-+..+
T Consensus 288 ~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~ 320 (476)
T PLN00028 288 ETAGAIAASFGLMNLFARPAGGYLSDVAARRFG 320 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 334444443334445677788888888766543
No 34
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=26.02 E-value=4.4e+02 Score=29.40 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=47.4
Q ss_pred ccccCCCCC-ccceeeeecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 006525 332 GDVFRPPTN-SDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKL 403 (642)
Q Consensus 332 gDVFR~P~~-~~lls~lvG~G~Qll~~~~~~l~~a~~g~l~p~~rg~l~t~~i~~y~~~~~isGY~S~~~yk~ 403 (642)
-+++|.|+- ..++..+++.|-|+..-+.+.=++.-.. .-+.+.++..+..|=+.++++....||+.+.
T Consensus 205 ~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~----g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 205 LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA----GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred HHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHcc----CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 357888874 4556677777777766544444433221 1145678889999999999999999999764
No 35
>TIGR00901 2A0125 AmpG-related permease.
Probab=25.90 E-value=2e+02 Score=30.21 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=11.8
Q ss_pred HhhhhHHHHHHHHHhhcCccc
Q 006525 389 MGLFAGYASARLYKLFKGTEW 409 (642)
Q Consensus 389 ~~~isGY~S~~~yk~~~g~~W 409 (642)
.+++++..++++.+.++.+++
T Consensus 257 ~~~~g~~~~g~l~~r~g~~~~ 277 (356)
T TIGR00901 257 GAILGGLIGGIIMQPLNILYA 277 (356)
T ss_pred HHHHHHHHHHHHHhhhhHHHH
Confidence 444555566666666654443
No 36
>PRK12307 putative sialic acid transporter; Provisional
Probab=25.45 E-value=2.6e+02 Score=30.13 Aligned_cols=25 Identities=4% Similarity=-0.115 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhcC
Q 006525 382 MLLLWVFMGLFAGYASARLYKLFKG 406 (642)
Q Consensus 382 ~i~~y~~~~~isGY~S~~~yk~~~g 406 (642)
....+.+.+.++....+++-+.++.
T Consensus 271 ~~~~~~~~~~~g~~~~g~l~dr~~~ 295 (426)
T PRK12307 271 LMTAAAFGTVLGNIVWGLCADRIGL 295 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345556677777777777776653
No 37
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=23.96 E-value=1e+02 Score=34.14 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=11.8
Q ss_pred HHHHHHhhhhHHHHHHHHHhh
Q 006525 384 LLWVFMGLFAGYASARLYKLF 404 (642)
Q Consensus 384 ~~y~~~~~isGY~S~~~yk~~ 404 (642)
.++.+.++++..+.|.+-..+
T Consensus 296 ~~~~~~~~~g~~~~G~l~dr~ 316 (452)
T PRK11273 296 FLYEYAGIPGTLLCGWMSDKV 316 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666554
No 38
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=23.83 E-value=8.1e+02 Score=26.33 Aligned_cols=55 Identities=22% Similarity=0.114 Sum_probs=33.4
Q ss_pred cchhhHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHH---------hhccchhhhhhhcc
Q 006525 418 ITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFG---------ISVPLVYVGSFVGF 472 (642)
Q Consensus 418 ~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~---------v~~PL~~iG~~~g~ 472 (642)
..+|..++.+....|.+.+..+-.+-..-..++....+-+. .-..+.++|+.+|+
T Consensus 141 ~~~~~~~~~ivg~sNAvNl~DGlDGLa~g~~~i~~~~~~~i~~~~~~~~~~~~~~al~ga~LGF 204 (319)
T COG0472 141 LFILFAVFAIVGASNAVNLTDGLDGLAAGLSAIALLALALIALLQGLGELALICAALAGACLGF 204 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 45667777888888988888776654433333333332211 12345667889997
No 39
>PF14093 DUF4271: Domain of unknown function (DUF4271)
Probab=22.74 E-value=7.4e+02 Score=24.39 Aligned_cols=16 Identities=0% Similarity=-0.060 Sum_probs=9.4
Q ss_pred HHHHhhhhHHHHHHHH
Q 006525 386 WVFMGLFAGYASARLY 401 (642)
Q Consensus 386 y~~~~~isGY~S~~~y 401 (642)
..+++.+.+|...|.-
T Consensus 89 ~~i~~~~~~~~~~K~~ 104 (208)
T PF14093_consen 89 GIIFLIVFLFFLLKFI 104 (208)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3446666676666543
No 40
>PRK09546 zntB zinc transporter; Reviewed
Probab=22.25 E-value=60 Score=34.75 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhccchhhhhhhcccCC
Q 006525 448 TMFALIVLWFGISVPLVYVGSFVGFKKP 475 (642)
Q Consensus 448 ti~~l~~lw~~v~~PL~~iG~~~g~k~~ 475 (642)
..+.++.++-.+.+|++++.|++|.+.+
T Consensus 262 ~~m~~Ltilt~IflPlT~IaGiyGMNf~ 289 (324)
T PRK09546 262 RRTYTMSLMAMVFLPTTFLTGLFGVNLG 289 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 3455666666677799999999998753
No 41
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=21.41 E-value=3.8e+02 Score=28.76 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhhhcCceEE
Q 006525 288 MIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQEETGWKLV 330 (642)
Q Consensus 288 ~ivl~L~~~v~~Il~R~l~~D~~~yn~~~~~~~~~ee~GWKlv 330 (642)
.-+++|.+.+.+...-++-+|..-|.+-.|+|++....++-++
T Consensus 45 ~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I 87 (303)
T COG1575 45 VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLI 87 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccee
Confidence 3345555556666666777887777665443333344455444
No 42
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=21.32 E-value=2.7e+02 Score=27.41 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=35.5
Q ss_pred hcCccchhhhhhhccchhhHHHHHHHHHHHHHhhccCCC-ccChhH--HHHHHHHHHHhhcc
Q 006525 404 FKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSG-AVPFGT--MFALIVLWFGISVP 462 (642)
Q Consensus 404 ~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~Ss~-aipf~t--i~~l~~lw~~v~~P 462 (642)
+..+-|++..+..+ +.|....++|...|.+-|+. =+-|+. ++.+-++..+++.|
T Consensus 111 Lp~~~W~~Ln~~W~-----~FFlf~ai~N~yV~~~fs~d~WV~FKvfG~~~ltlvf~l~q~~ 167 (180)
T COG2917 111 LPEEVWRKLNLRWA-----LFFLFCAIANEYVARNFSTDTWVNFKVFGLTPLTLIFTLIQGP 167 (180)
T ss_pred CCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCCCeEEEeehhhhhHHHHHHHHHHHH
Confidence 34477887766655 56677789999999999994 466655 23444444445444
No 43
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=21.10 E-value=6.6e+02 Score=28.60 Aligned_cols=67 Identities=24% Similarity=0.201 Sum_probs=32.3
Q ss_pred cchhHHHHHHHHHH-HHHHhhccCCCCcchHHHHHHHHHHHHhh---------hhHHHHHHH-------HHhhcC--ccc
Q 006525 349 GTGVQFFGMMLVTM-IFALLGFLSPSNRGGLMTAMLLLWVFMGL---------FAGYASARL-------YKLFKG--TEW 409 (642)
Q Consensus 349 G~G~Qll~~~~~~l-~~a~~g~l~p~~rg~l~t~~i~~y~~~~~---------isGY~S~~~-------yk~~~g--~~W 409 (642)
-.|.|+.+.+.+.+ ++-....+.+.=+.-+...++.++.+.|+ +.|..+|-+ |..||. ..|
T Consensus 517 Pa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~iGliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~yr 596 (652)
T KOG2290|consen 517 PAGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLCIGLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDLYR 596 (652)
T ss_pred CcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhhccccccchhhhh
Confidence 36888876543332 33345555442233333344444444433 234444433 445775 456
Q ss_pred hhhhhh
Q 006525 410 KRIAFR 415 (642)
Q Consensus 410 ~~~~~l 415 (642)
|++.++
T Consensus 597 Kr~~il 602 (652)
T KOG2290|consen 597 KRFYIL 602 (652)
T ss_pred hHHHHH
Confidence 775433
No 44
>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death. The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.
Probab=20.73 E-value=50 Score=30.95 Aligned_cols=71 Identities=15% Similarity=0.304 Sum_probs=44.6
Q ss_pred EEeccccCCCCccccccc--CC--C--cCCCCCcCCCCCcc-ccccCCceeeCCeEEEeccccccccceeeecCHHHHHH
Q 006525 48 KVNKLTSTKTQLPYSYYS--IP--Y--CRPKKIVDSAENLG-EVLRGDRIENSPYVFKMREPQMCNVICRLILDAKTAKA 120 (642)
Q Consensus 48 ~vNkl~s~~~~~~y~Yy~--lp--f--C~p~~~~~~~~slG-e~L~Gdr~~~S~y~i~f~~~~~c~~lC~~~~~~~~~~~ 120 (642)
+|-+|++.-++.-|||-+ |- | +... ..|+- +...|++-..=|.+++|.....|.+|.+ + .
T Consensus 33 ~V~~IkpG~~LFLfn~~~r~L~GifeA~S~G-----~~ni~p~Af~~~~~s~fPaQVrf~i~~~C~PL~E-----~---~ 99 (132)
T smart00767 33 FVRNIKPGLPLFLYNYDTRKLHGIFEATSFG-----GLNIDPNAFEGKKESRFPAQVRFRIRKDCKPLPE-----S---E 99 (132)
T ss_pred hhheeCCCCEEEEEecCCceeeeEEEeccCC-----cCCcChhHhcCCCCCccCcEEEEEEeeeecCCCH-----H---H
Confidence 467788887788888864 21 2 1211 11221 2344444233377899999999988763 2 3
Q ss_pred HHHHHHhcceE
Q 006525 121 FKEKIDDEYRV 131 (642)
Q Consensus 121 l~~~I~~~Y~~ 131 (642)
++.+|++||..
T Consensus 100 f~~aI~~nY~~ 110 (132)
T smart00767 100 FRSAILENYDG 110 (132)
T ss_pred HHHHHHHhCcC
Confidence 89999999954
Done!