Query 006525
Match_columns 642
No_of_seqs 131 out of 653
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 18:07:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006525.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2154-2158//hhsearch_pdb/006525hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 1.0 1 1 16.0 2.2 57 277-339 7-68 (79)
2 3o7q_A L-fucose-proton symport 1.0 1 1 15.4 3.6 15 383-397 121-135 (438)
3 2iub_A CORA, divalent cation t 1.0 1 1 15.0 1.0 31 445-475 298-328 (363)
4 2qjy_A Cytochrome B; cytochrom 1.0 1 1 14.6 3.6 31 410-441 192-222 (445)
5 4ev6_A Magnesium transport pro 1.0 1 1 14.0 2.4 30 446-475 275-304 (339)
6 1sdi_A ORF-23, hypothetical pr 1.0 1 1 13.6 1.9 53 360-412 135-192 (213)
7 3bbo_Z Ribosomal protein L29; 1.0 1 1 13.6 0.6 40 300-341 105-154 (173)
8 3cx5_C Cytochrome B-C1 complex 1.0 1 1 13.5 4.7 31 411-442 178-208 (385)
9 1pw4_A Glycerol-3-phosphate tr 1.0 1 1 12.9 5.8 136 287-425 189-338 (451)
10 1vf5_A Cytochrome B6; photosyn 1.0 1 1 12.8 2.1 100 529-628 31-148 (215)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=15.96 Aligned_cols=57 Identities=18% Similarity=0.467 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHCCHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 30134689999999999999999999986-----2234321000224566561285078413357899
Q 006525 277 QIHWFSIVNSLMIVLFLSGMVAMIMLRTL-----YRDISKYNELETQEEAQEETGWKLVHGDVFRPPT 339 (642)
Q Consensus 277 ~ihw~sIiNS~iivl~L~~~v~~Il~r~l-----~~D~~~y~~~~~~~~~~ee~GWKlvhgDVFR~P~ 339 (642)
..+...|+-.++..++|.+++..++.|.+ ||.++|+++ ++....|+.-....||+|.
T Consensus 7 ~~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEk------E~~~~~w~~~~NPlyk~~t 68 (79)
T 2knc_B 7 GPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEE------ERARAKWDTANNPLYKEAT 68 (79)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTTTCCHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHCCCCCCCCCCCCCCC
T ss_conf 9885115999999999999999999999999999999999999------9986324567898826876
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=1.00 E-value=1 Score=15.43 Aligned_cols=15 Identities=13% Similarity=0.053 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999733437888
Q 006525 383 LLLWVFMGLFAGYAS 397 (642)
Q Consensus 383 i~~y~~~g~isGY~S 397 (642)
++...+.|+..|-..
T Consensus 121 ~~~~~l~G~~~~~~~ 135 (438)
T 3o7q_A 121 LVGLFIIAAGLGCLE 135 (438)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999983078742
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=1.00 E-value=1 Score=15.05 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
Q ss_conf 7368999999999852000001101123689
Q 006525 445 PFGTMFALIVLWFGISVPLVYVGSFVGFKKP 475 (642)
Q Consensus 445 pf~ti~~l~~lw~~v~~PL~~iG~~~g~k~~ 475 (642)
--..++..+..|-.+-+|++++.|++|-+.+
T Consensus 298 ~~N~imk~LTiit~IflP~T~IaGiyGMNf~ 328 (363)
T 2iub_A 298 KTNEVMKVLTIIATIFMPLTFIAGIYGMNFE 328 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999999999856134578
No 4
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=1.00 E-value=1 Score=14.60 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=17.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 35554320211368999999998987651677
Q 006525 410 KRIAFRTAITFPGIVSAIFFVLNALIWGQKSS 441 (642)
Q Consensus 410 k~~~~lt~~l~P~~~~~i~~~~N~i~~~~~Ss 441 (642)
.|.-.+- .++|.++.+...+==.++.-.||+
T Consensus 192 ~RFFslH-flLPfii~~lv~lHl~~LH~~GS~ 222 (445)
T 2qjy_A 192 NRFFSLH-YLLPFVIAALVAIHIWAFHSTGNN 222 (445)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999-999999999999888887238899
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=13.98 Aligned_cols=30 Identities=7% Similarity=0.218 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
Q ss_conf 368999999999852000001101123689
Q 006525 446 FGTMFALIVLWFGISVPLVYVGSFVGFKKP 475 (642)
Q Consensus 446 f~ti~~l~~lw~~v~~PL~~iG~~~g~k~~ 475 (642)
-..++..+.+|-.+-+|++++.|++|-+.+
T Consensus 275 ~N~~mk~LTiit~IflP~T~IaGiyGMNf~ 304 (339)
T 4ev6_A 275 MNQIMKILTMVTTIFAVPMWITGIYGMNFS 304 (339)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999999999999953427579
No 6
>1sdi_A ORF-23, hypothetical protein YCFC; structural genomics, paracytosis, peripheral membrane protein, PSI, protein structure initiative; 1.65A {Escherichia coli} SCOP: a.198.1.1 PDB: 1qz4_A
Probab=1.00 E-value=1 Score=13.57 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=33.1
Q ss_pred HHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99999985046878-----961599999999999733437888999985149650355
Q 006525 360 VTMIFALLGFLSPS-----NRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRI 412 (642)
Q Consensus 360 ~~i~~a~~g~~~p~-----~rg~l~t~~i~~y~~~g~isGY~S~~~yk~f~g~~Wk~~ 412 (642)
..+-.-.++-+.|. ++..|-...+.-=+=.-.+||-=|+.++++.||++|+..
T Consensus 135 A~iY~dtIS~l~pRIqV~G~p~~Lqq~~~~~kIRAlLLAGIRsAvLWRQ~GG~Rwqll 192 (213)
T 1sdi_A 135 AAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVLWHQVGGGRLQLM 192 (213)
T ss_dssp HHHHHHHTGGGSSCCCCCSCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHCCCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9999984126899658738878847910799999999999999999998089515678
No 7
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=1.00 E-value=1 Score=13.56 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHCCHHHHH----------HHHHHCCCEEEECCCCCCCCCC
Q ss_conf 99998622343210002245----------6656128507841335789985
Q 006525 300 IMLRTLYRDISKYNELETQE----------EAQEETGWKLVHGDVFRPPTNS 341 (642)
Q Consensus 300 Il~r~l~~D~~~y~~~~~~~----------~~~ee~GWKlvhgDVFR~P~~~ 341 (642)
--+|.+||||+|-..+..+. .-.-+.-||. .-|-|||+-.
T Consensus 105 srIR~VRRdIARIkTVLrErel~~~~~kr~SRk~~~~~k~--s~~~~ppp~~ 154 (173)
T 3bbo_Z 105 SDFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDRQWKK--SIVPRPPPSL 154 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCCCCCH
T ss_conf 6899989999999999999998732014577888888620--3204699851
No 8
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=1.00 E-value=1 Score=13.50 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=17.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 55543202113689999999989876516777
Q 006525 411 RIAFRTAITFPGIVSAIFFVLNALIWGQKSSG 442 (642)
Q Consensus 411 ~~~~lt~~l~P~~~~~i~~~~N~i~~~~~Ss~ 442 (642)
|.-.+- .++|.++.+...+==.++...||+.
T Consensus 178 RFf~lH-fllPfii~~lv~iHl~~LH~~Gs~n 208 (385)
T 3cx5_C 178 RFFALH-YLVPFIIAAMVIMHLMALHIHGSSN 208 (385)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999-9999999999999999996558998
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=1.00 E-value=1 Score=12.94 Aligned_cols=136 Identities=13% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-----------HCCCEEE-ECCCCCCCCCCCCEEEEECCHHHH
Q ss_conf 9999999999999999986223432100022456656-----------1285078-413357899853100001110488
Q 006525 287 LMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQE-----------ETGWKLV-HGDVFRPPTNSDLLCVYVGTGVQF 354 (642)
Q Consensus 287 ~iivl~L~~~v~~Il~r~l~~D~~~y~~~~~~~~~~e-----------e~GWKlv-hgDVFR~P~~~~lls~lvG~G~Ql 354 (642)
+.+...+..+...+....++..-.+..+.+.++..++ +..+|.. ..+++| ++.++..++....+.
T Consensus 189 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 265 (451)
T 1pw4_A 189 LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP---NKLLWYIAIANVFVY 265 (451)
T ss_dssp THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSS---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHC---CHHHHHHHHHHHHHH
T ss_conf 99999999999999986245797663999845532011010034421002445316999972---797999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHCCCHHHHHH
Q ss_conf 99999999999850468789615999999999997334378889999851--496503555432021136899
Q 006525 355 FGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLF--KGTEWKRIAFRTAITFPGIVS 425 (642)
Q Consensus 355 l~~~~~~i~~a~~g~~~p~~rg~l~t~~i~~y~~~g~isGY~S~~~yk~f--~g~~Wk~~~~lt~~l~P~~~~ 425 (642)
.........+..+-...-.-...........+.+.+.+++..++++.+.+ +.+.............-..++
T Consensus 266 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338 (451)
T ss_dssp HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999988999998529998999999999999999999989999999705773037999999999999999
No 10
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=1.00 E-value=1 Score=12.78 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHH-----HHHHHEE
Q ss_conf 157888799999999998877-----------677543411246788731110010258116788999-----8854102
Q 006525 529 QFYYIFGFLFLVFVILIVTCA-----------EITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLY-----ATFYFFT 592 (642)
Q Consensus 529 ~~yy~fgfL~~~~iilii~~a-----------~vsIi~tY~~L~~Edy~WwW~SF~~~gs~~~y~f~y-----si~y~~~ 592 (642)
+..+.||.++...+++-++++ +.+--.+-.....-||-|--|+.-+-|++.+++.+| .+||--.
T Consensus 31 s~~w~fGsll~~~l~iqi~TG~~Lam~Y~p~~~~Af~Sv~~I~~dv~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy 110 (215)
T 1vf5_A 31 NIFYCLGGITLTCFLIQFATGFAMTFYYKPTVTEAYASVQYIMNEVSFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGF 110 (215)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 79998799999999999999999995745986688999999986145604231061879999999999999999975100
Q ss_pred E--EEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2--00146310025789999999999997201677989
Q 006525 593 K--LEITKLVSGILYFGYMLIASYAFFVLTGTIGFYAC 628 (642)
Q Consensus 593 ~--~~~~g~~~~~~yf~ys~l~s~~~~l~~G~IGflas 628 (642)
+ -+..-.+..++++.-++..=..+-|-.|-.+|.+.
T Consensus 111 ~~p~~~~W~~Gv~l~~l~m~~aF~GYvLPwgqmS~wga 148 (215)
T 1vf5_A 111 KKPRELTWISGVILAVITVSFGVTGYSLPWDQVGYWAV 148 (215)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHHHHTTTTCBHHHHHHH
T ss_pred CCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 35787600768999999999999023247786311467
Done!