Query 006525
Match_columns 642
No_of_seqs 131 out of 653
Neff 6.7
Searched_HMMs 13730
Date Tue Mar 26 18:10:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006525.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2154-2158//hhsearch_scop/006525hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sdia_ a.198.1.1 (A:) Hypothe 19.5 19 0.0014 12.6 1.9 54 359-412 134-192 (213)
2 d1pv7a_ f.38.1.2 (A:) Lactose 13.7 27 0.002 11.7 1.3 20 611-630 364-383 (417)
3 d1vqoq1 b.34.5.1 (Q:1-95) Ribo 5.4 64 0.0047 9.4 2.5 27 37-65 31-57 (95)
4 d1j3ea_ d.228.1.1 (A:) Replica 5.0 70 0.0051 9.1 0.1 14 484-497 68-81 (115)
5 d2iuba2 f.17.3.1 (A:286-349) M 4.4 82 0.006 8.7 2.0 26 449-474 5-30 (64)
6 d3cnxa1 d.17.4.17 (A:5-157) Un 4.1 90 0.0065 8.5 0.9 18 246-263 124-141 (153)
7 d1oi2a_ c.119.1.2 (A:) Dihydro 4.0 94 0.0068 8.4 1.3 17 194-210 173-189 (347)
8 d1r7ma2 d.95.2.1 (A:121-225) D 3.7 1E+02 0.0075 8.1 1.6 31 105-135 39-69 (105)
9 d2f86b1 d.17.4.7 (B:343-471) A 3.6 1.1E+02 0.0077 8.1 0.2 16 248-263 105-120 (129)
10 d1un8a4 c.119.1.2 (A:1-335) Di 3.5 1.1E+02 0.0079 8.0 0.9 23 39-61 248-270 (335)
No 1
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]}
Probab=19.54 E-value=19 Score=12.55 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 999999985046878-----961599999999999733437888999985149650355
Q 006525 359 LVTMIFALLGFLSPS-----NRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRI 412 (642)
Q Consensus 359 ~~~i~~a~~g~~~p~-----~rg~l~t~~i~~y~~~g~isGY~S~~~yk~f~g~~Wk~~ 412 (642)
+..+--..++-+.|. ++..|-.....-=+=+-.+||-=|+.+|++.||++|+..
T Consensus 134 la~iY~dtIS~l~pRI~V~G~~~~L~~~~~a~kIRALLLAGIRaavLWrQ~GG~Rwqll 192 (213)
T d1sdia_ 134 MAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVLWHQVGGGRLQLM 192 (213)
T ss_dssp HHHHHHHHTGGGSSCCCCCSCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999997433698078848788826952699999999999999999999289605678
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.68 E-value=27 Score=11.67 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999720167798999
Q 006525 611 IASYAFFVLTGTIGFYACFW 630 (642)
Q Consensus 611 l~s~~~~l~~G~IGflas~~ 630 (642)
+...+.+......|+-..++
T Consensus 364 i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 364 FMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp HHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHH
T ss_conf 99999999999979899999
No 3
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=5.36 E-value=64 Score=9.36 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=17.8
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 77899993899983034699886434545
Q 006525 37 QDFVKGDELYVKVNKLTSTKTQLPYSYYS 65 (642)
Q Consensus 37 ~~Y~~gd~V~l~vN~i~s~~~~~~Y~Yy~ 65 (642)
+.|+.||.|.+.+|. |...-+|+.+|.
T Consensus 31 ~~y~~GD~V~I~idp--sv~kGmPh~~yh 57 (95)
T d1vqoq1 31 EEFDDGEKVHLKIDP--SVPNGRFHPRFD 57 (95)
T ss_dssp CCCCTTCEEEECCCT--TCCSSCCCGGGT
T ss_pred EECCCCCEEEEEECC--CEECCCCCEEEC
T ss_conf 660389899998468--725186310342
No 4
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=4.99 E-value=70 Score=9.13 Aligned_cols=14 Identities=14% Similarity=0.719 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 78899999997654
Q 006525 484 NKIPRQIPEQAWYM 497 (642)
Q Consensus 484 n~ipR~IP~~~~y~ 497 (642)
..-||+||..|++.
T Consensus 68 ~tkPk~Ip~TpfWV 81 (115)
T d1j3ea_ 68 QTKPKHVPGTPYWV 81 (115)
T ss_dssp SCCCEECTTSSCEE
T ss_pred CCCCCCCCCCCEEE
T ss_conf 89976399999577
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.41 E-value=82 Score=8.72 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCC
Q ss_conf 99999999985200000110112368
Q 006525 449 MFALIVLWFGISVPLVYVGSFVGFKK 474 (642)
Q Consensus 449 i~~l~~lw~~v~~PL~~iG~~~g~k~ 474 (642)
.+..+..+-.+-+|++++.|++|-+.
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999996631677
No 6
>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]}
Probab=4.11 E-value=90 Score=8.49 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=8.7
Q ss_pred CEEEEEEEEEEEECCCCC
Q ss_conf 189999999995415420
Q 006525 246 KEIIFTYDVEFQESDVKW 263 (642)
Q Consensus 246 ~~i~fTYSV~w~~s~~~w 263 (642)
....-.++.-|+..+-.|
T Consensus 124 ~~~~~r~T~v~~k~dg~W 141 (153)
T d3cnxa1 124 VGQLVVATNVFRRTPDGW 141 (153)
T ss_dssp EEEEEEEEEEEECCTTCC
T ss_pred CCEEEEEEEEEEEECCEE
T ss_conf 420289999999989999
No 7
>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK {Escherichia coli [TaxId: 562]}
Probab=3.96 E-value=94 Score=8.38 Aligned_cols=17 Identities=12% Similarity=0.280 Sum_probs=10.7
Q ss_pred CCEEEEEEEEEEEEEEC
Q ss_conf 85099999998653212
Q 006525 194 DYARIVGFEVKPFSVKH 210 (642)
Q Consensus 194 ~~~~IVg~~v~P~Si~~ 210 (642)
+.-+-+|+.+.|+++..
T Consensus 173 ~~~~Tigvals~c~vP~ 189 (347)
T d1oi2a_ 173 NQGHSIGIALGACTVPA 189 (347)
T ss_dssp TTEEEEEEEEECC----
T ss_pred HHCCEEEEEECCCCCCC
T ss_conf 62145667704777888
No 8
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.67 E-value=1e+02 Score=8.13 Aligned_cols=31 Identities=6% Similarity=0.181 Sum_probs=24.8
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 2223155239888999999987414689999
Q 006525 105 CNVICRLILDAKTAKAFKEKIDDEYRVNMIL 135 (642)
Q Consensus 105 c~~lC~~~l~~~~~~~l~~~I~~~Y~~~~~i 135 (642)
...+|+..++.+|++.+.+...+.|..+-.+
T Consensus 39 ~i~l~T~~Ft~~e~~~L~~~L~~kf~l~~~i 69 (105)
T d1r7ma2 39 SIVLNTQSFTFEEVEYLVKGLRNKFQLNCYV 69 (105)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHCCEEEE
T ss_conf 3699947999999999999999873945899
No 9
>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]}
Probab=3.58 E-value=1.1e+02 Score=8.05 Aligned_cols=16 Identities=6% Similarity=0.136 Sum_probs=8.6
Q ss_pred EEEEEEEEEEECCCCC
Q ss_conf 9999999995415420
Q 006525 248 IIFTYDVEFQESDVKW 263 (642)
Q Consensus 248 i~fTYSV~w~~s~~~w 263 (642)
...-++-.|+..+-.|
T Consensus 105 ~~~r~T~V~~k~~g~W 120 (129)
T d2f86b1 105 RQSQESRVWSKKQGRW 120 (129)
T ss_dssp EEEEEEEEEEEETTEE
T ss_pred CCEEEEEEEEEECCEE
T ss_conf 1289999999989998
No 10
>d1un8a4 c.119.1.2 (A:1-335) Dihydroxyacetone kinase {Citrobacter freundii [TaxId: 546]}
Probab=3.53 E-value=1.1e+02 Score=8.00 Aligned_cols=23 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 89999389998303469988643
Q 006525 39 FVKGDELYVKVNKLTSTKTQLPY 61 (642)
Q Consensus 39 Y~~gd~V~l~vN~i~s~~~~~~Y 61 (642)
+++||+|-++||.+++....+-|
T Consensus 248 ~~~gd~v~llVN~LG~ts~lEl~ 270 (335)
T d1un8a4 248 LPETGRLAVMINNLGGVSVAEMA 270 (335)
T ss_dssp SCSSCCEEEEEEECBCSCHHHHH
T ss_pred CCCCCEEEEEECCCCCCCHHHHH
T ss_conf 58998089998489997399999
Done!