Query 006527
Match_columns 641
No_of_seqs 326 out of 1249
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 00:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04714 BAH_BAHCC1 BAH, or Bro 99.9 1.1E-28 2.5E-33 225.5 5.8 118 512-637 1-120 (121)
2 cd04717 BAH_polybromo BAH, or 99.9 1.5E-27 3.3E-32 216.7 7.8 118 512-640 1-120 (121)
3 cd04713 BAH_plant_3 BAH, or Br 99.9 6E-27 1.3E-31 220.8 7.7 128 500-639 6-136 (146)
4 cd04715 BAH_Orc1p_like BAH, or 99.9 9.6E-27 2.1E-31 222.8 8.7 110 490-602 6-123 (159)
5 cd04718 BAH_plant_2 BAH, or Br 99.9 3.6E-26 7.8E-31 216.0 4.6 92 533-639 56-147 (148)
6 cd04721 BAH_plant_1 BAH, or Br 99.9 3.1E-25 6.8E-30 205.9 6.8 115 508-633 1-118 (130)
7 cd04716 BAH_plantDCM_I BAH, or 99.9 4E-25 8.8E-30 203.4 5.7 117 512-639 1-120 (122)
8 cd04370 BAH BAH, or Bromo Adja 99.9 7.6E-25 1.7E-29 193.3 7.1 118 512-639 1-122 (123)
9 PF01426 BAH: BAH domain; Int 99.9 9.2E-25 2E-29 193.7 4.1 115 513-639 1-118 (119)
10 smart00439 BAH Bromo adjacent 99.9 3.9E-24 8.4E-29 189.6 7.8 116 514-639 1-119 (120)
11 cd04709 BAH_MTA BAH, or Bromo 99.9 8.6E-23 1.9E-27 196.6 7.2 117 512-639 1-139 (164)
12 cd04720 BAH_Orc1p_Yeast BAH, o 99.9 1.7E-22 3.6E-27 196.7 8.1 124 507-639 44-177 (179)
13 cd04712 BAH_DCM_I BAH, or Brom 99.8 1.5E-20 3.3E-25 174.7 7.8 112 510-639 1-128 (130)
14 KOG1827 Chromatin remodeling c 99.8 1.7E-20 3.6E-25 209.1 5.6 121 508-639 184-306 (629)
15 cd04710 BAH_fungalPHD BAH, or 99.8 2E-19 4.4E-24 168.3 6.8 116 508-636 5-133 (135)
16 cd04760 BAH_Dnmt1_I BAH, or Br 99.8 5.6E-19 1.2E-23 163.4 8.2 118 512-636 1-123 (124)
17 cd04708 BAH_plantDCM_II BAH, o 99.8 3.3E-19 7.2E-24 176.5 7.1 120 509-639 2-145 (202)
18 cd04719 BAH_Orc1p_animal BAH, 99.7 1.8E-18 4E-23 160.8 7.6 108 513-630 2-120 (128)
19 KOG1886 BAH domain proteins [T 99.7 5.1E-18 1.1E-22 183.8 3.5 139 489-639 20-168 (464)
20 cd04711 BAH_Dnmt1_II BAH, or B 99.7 4.1E-17 8.9E-22 152.7 3.4 89 533-637 30-133 (137)
21 KOG1246 DNA-binding protein ju 99.0 3.4E-10 7.3E-15 133.5 7.5 121 219-345 154-290 (904)
22 KOG1244 Predicted transcriptio 99.0 1.5E-10 3.3E-15 118.9 2.3 53 218-273 279-331 (336)
23 KOG0825 PHD Zn-finger protein 98.9 5.2E-10 1.1E-14 126.8 2.0 52 219-273 214-266 (1134)
24 PF00628 PHD: PHD-finger; Int 98.7 3.3E-09 7.3E-14 82.7 1.4 48 222-272 1-50 (51)
25 KOG1512 PHD Zn-finger protein 98.5 3.9E-08 8.4E-13 102.0 1.8 56 208-274 308-364 (381)
26 smart00249 PHD PHD zinc finger 98.4 1.6E-07 3.4E-12 69.9 3.6 46 222-270 1-47 (47)
27 KOG4299 PHD Zn-finger protein 98.4 6.5E-08 1.4E-12 108.7 1.9 51 221-274 254-306 (613)
28 KOG1245 Chromatin remodeling c 98.2 2E-07 4.3E-12 114.1 -0.9 65 203-275 1096-1160(1404)
29 cd04718 BAH_plant_2 BAH, or Br 98.2 8.2E-07 1.8E-11 85.1 2.7 33 245-279 1-33 (148)
30 KOG1973 Chromatin remodeling p 98.1 1.3E-06 2.8E-11 90.9 1.8 49 219-274 218-269 (274)
31 KOG4443 Putative transcription 98.0 2.3E-06 5E-11 96.8 2.4 58 207-273 61-118 (694)
32 COG5034 TNG2 Chromatin remodel 97.8 9.9E-06 2.2E-10 83.4 2.6 45 221-272 222-269 (271)
33 KOG0955 PHD finger protein BR1 97.8 1.6E-05 3.4E-10 95.1 3.6 54 217-274 216-270 (1051)
34 KOG4323 Polycomb-like PHD Zn-f 97.7 1.8E-05 3.9E-10 87.6 2.1 62 206-273 158-224 (464)
35 KOG0957 PHD finger protein [Ge 97.6 1.5E-05 3.2E-10 88.2 0.8 50 220-271 544-596 (707)
36 KOG0954 PHD finger protein [Ge 97.5 4.8E-05 1E-09 87.3 2.7 67 219-289 270-338 (893)
37 KOG0383 Predicted helicase [Ge 97.5 3.4E-05 7.3E-10 89.2 1.2 49 219-273 46-94 (696)
38 COG5141 PHD zinc finger-contai 97.4 6.1E-05 1.3E-09 83.3 1.8 52 219-274 192-244 (669)
39 COG5076 Transcription factor i 97.3 4.5E-05 9.7E-10 82.1 -0.1 95 505-602 267-363 (371)
40 PF13831 PHD_2: PHD-finger; PD 96.9 0.00021 4.6E-09 53.5 0.1 35 234-271 2-36 (36)
41 KOG0956 PHD finger protein AF1 96.9 0.00041 8.9E-09 79.4 2.3 50 221-274 6-58 (900)
42 KOG3554 Histone deacetylase co 95.2 0.03 6.6E-07 62.4 6.0 109 514-634 5-158 (693)
43 KOG1473 Nucleosome remodeling 93.3 0.046 1E-06 66.2 2.4 47 220-272 344-390 (1414)
44 KOG0957 PHD finger protein [Ge 90.4 0.17 3.8E-06 57.1 2.6 54 221-274 120-180 (707)
45 PF14446 Prok-RING_1: Prokaryo 87.9 0.34 7.3E-06 39.9 1.9 35 219-253 4-38 (54)
46 PF15446 zf-PHD-like: PHD/FYVE 86.4 0.35 7.5E-06 48.1 1.5 65 222-287 1-75 (175)
47 KOG4628 Predicted E3 ubiquitin 86.1 0.52 1.1E-05 51.5 2.7 47 221-273 230-276 (348)
48 KOG1473 Nucleosome remodeling 85.4 0.26 5.7E-06 60.0 0.1 65 206-275 414-481 (1414)
49 PF07227 DUF1423: Protein of u 75.3 1.5 3.3E-05 49.3 1.7 68 215-289 123-202 (446)
50 KOG4299 PHD Zn-finger protein 75.3 1.7 3.7E-05 50.5 2.1 49 220-273 47-95 (613)
51 PTZ00112 origin recognition co 74.6 4.7 0.0001 49.5 5.5 58 502-559 440-521 (1164)
52 KOG1632 Uncharacterized PHD Zn 73.0 1.7 3.7E-05 47.4 1.4 49 225-274 64-114 (345)
53 KOG1512 PHD Zn-finger protein 72.7 1.1 2.4E-05 47.9 -0.1 53 220-272 258-316 (381)
54 KOG4443 Putative transcription 72.5 1.3 2.9E-05 51.7 0.4 54 219-274 17-72 (694)
55 PF11793 FANCL_C: FANCL C-term 64.5 3.3 7.2E-05 35.2 1.1 51 221-272 3-63 (70)
56 PF10383 Clr2: Transcription-s 61.8 8 0.00017 37.0 3.3 26 503-528 1-26 (139)
57 KOG0383 Predicted helicase [Ge 58.4 2.1 4.5E-05 50.8 -1.6 51 218-273 504-554 (696)
58 COG5475 Uncharacterized small 56.5 22 0.00047 29.9 4.5 37 512-558 2-40 (60)
59 PF13832 zf-HC5HC2H_2: PHD-zin 52.8 8.2 0.00018 34.6 1.7 31 220-253 55-87 (110)
60 PF13901 DUF4206: Domain of un 52.3 12 0.00027 37.7 3.0 44 219-273 151-198 (202)
61 KOG1844 PHD Zn-finger proteins 51.9 8.7 0.00019 43.1 2.0 47 225-275 90-137 (508)
62 PF12861 zf-Apc11: Anaphase-pr 51.5 6.8 0.00015 35.1 0.9 45 223-272 35-79 (85)
63 PF07649 C1_3: C1-like domain; 46.4 9.2 0.0002 27.2 0.7 28 222-250 2-29 (30)
64 PF09926 DUF2158: Uncharacteri 45.6 16 0.00035 30.0 2.1 38 515-555 1-38 (53)
65 KOG1632 Uncharacterized PHD Zn 44.3 2.7 5.9E-05 45.9 -3.3 67 208-274 227-296 (345)
66 PF10367 Vps39_2: Vacuolar sor 43.9 16 0.00034 31.9 2.0 33 218-252 76-108 (109)
67 PF10497 zf-4CXXC_R1: Zinc-fin 42.3 10 0.00022 34.9 0.5 51 219-272 6-69 (105)
68 KOG1952 Transcription factor N 40.6 6.7 0.00015 47.3 -1.1 55 219-273 190-245 (950)
69 KOG4323 Polycomb-like PHD Zn-f 38.1 21 0.00045 40.8 2.2 50 220-273 83-133 (464)
70 PF13639 zf-RING_2: Ring finge 36.5 9.9 0.00021 28.8 -0.4 43 222-271 2-44 (44)
71 KOG3612 PHD Zn-finger protein 34.4 29 0.00063 40.3 2.7 50 218-273 58-108 (588)
72 KOG0823 Predicted E3 ubiquitin 33.3 52 0.0011 34.5 4.0 74 218-301 45-124 (230)
73 TIGR01206 lysW lysine biosynth 32.4 36 0.00078 28.1 2.2 45 221-265 3-52 (54)
74 PF15446 zf-PHD-like: PHD/FYVE 31.1 40 0.00087 34.0 2.7 20 234-253 122-141 (175)
75 PLN02638 cellulose synthase A 30.8 47 0.001 41.6 3.8 50 219-273 16-68 (1079)
76 PRK14559 putative protein seri 30.7 40 0.00086 40.1 3.1 47 221-272 2-49 (645)
77 PF13771 zf-HC5HC2H: PHD-like 30.4 33 0.00071 29.5 1.8 30 221-253 37-68 (90)
78 PF00130 C1_1: Phorbol esters/ 30.1 39 0.00085 26.3 2.0 35 219-253 10-45 (53)
79 PLN02436 cellulose synthase A 29.8 57 0.0012 40.9 4.2 50 219-273 35-87 (1094)
80 PF09345 DUF1987: Domain of un 29.3 28 0.0006 31.8 1.2 15 544-559 75-89 (99)
81 PLN02400 cellulose synthase 28.8 68 0.0015 40.3 4.6 50 219-273 35-87 (1085)
82 PF12678 zf-rbx1: RING-H2 zinc 28.7 22 0.00048 30.3 0.4 46 220-271 19-73 (73)
83 PF05191 ADK_lid: Adenylate ki 28.6 38 0.00083 25.6 1.6 28 237-272 2-29 (36)
84 KOG1244 Predicted transcriptio 28.4 15 0.00033 39.4 -0.7 56 218-274 222-285 (336)
85 KOG4718 Non-SMC (structural ma 27.5 12 0.00025 38.9 -1.7 51 216-272 177-227 (235)
86 KOG1829 Uncharacterized conser 27.3 19 0.00042 42.1 -0.2 46 219-273 510-559 (580)
87 cd00162 RING RING-finger (Real 26.8 19 0.00041 25.7 -0.3 42 223-272 2-43 (45)
88 PF00301 Rubredoxin: Rubredoxi 24.4 57 0.0012 26.2 2.0 16 256-273 28-43 (47)
89 KOG1734 Predicted RING-contain 23.7 24 0.00053 37.9 -0.2 53 218-274 222-280 (328)
90 COG1773 Rubredoxin [Energy pro 22.5 51 0.0011 27.5 1.4 42 221-273 4-45 (55)
91 PF03107 C1_2: C1 domain; Int 22.3 81 0.0018 22.6 2.3 28 222-251 2-30 (30)
92 TIGR00074 hypC_hupF hydrogenas 21.4 84 0.0018 27.6 2.6 28 514-541 35-67 (76)
93 PF08746 zf-RING-like: RING-li 21.3 29 0.00063 27.0 -0.2 41 223-270 1-43 (43)
94 PLN03208 E3 ubiquitin-protein 21.1 50 0.0011 33.8 1.3 77 219-301 17-106 (193)
95 smart00109 C1 Protein kinase C 21.0 36 0.00078 25.4 0.3 34 220-253 11-44 (49)
96 KOG1080 Histone H3 (Lys4) meth 20.6 81 0.0018 39.5 3.2 49 221-272 574-623 (1005)
No 1
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.95 E-value=1.1e-28 Score=225.48 Aligned_cols=118 Identities=20% Similarity=0.378 Sum_probs=104.6
Q ss_pred CEEEEeccEEEEecCCCCCCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCCCCCCCCcccccccCcccccccce
Q 006527 512 GVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLI 589 (641)
Q Consensus 512 G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~v~~I 589 (641)
|++||+||||+|+++++..+| |||++||++. +|+++|+|+||||||||.+ ||...|.+||||+|+|+|++++.+|
T Consensus 1 ~~~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~-~g~~~~~v~WfyrPeEt~~--~~~~~~~~~EvF~S~~~d~~~~~~I 77 (121)
T cd04714 1 KEIIRVGDCVLFKSPGRPSLPYVARIESLWEDP-EGNMVVRVKWYYRPEETKG--GRKPNHGEKELFASDHQDENSVQTI 77 (121)
T ss_pred CCEEEcCCEEEEeCCCCCCCCEEEEEEEEEEcC-CCCEEEEEEEEEcHHHccC--cccccCCCCceEecCCcccccHHHh
Confidence 789999999999999887888 9999999985 4889999999999999975 6677899999999999999999999
Q ss_pred ecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccc
Q 006527 590 RGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFR 637 (641)
Q Consensus 590 egkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~ 637 (641)
.|||.|+++.+|.++..+.. ......++|+|+..||+.+..++
T Consensus 78 ~gkc~V~~~~ey~~~~~~~~-----~~~~~~d~~~Ce~~yn~~~~~~~ 120 (121)
T cd04714 78 EHKCYVLTFAEYERLARVKK-----KPQDGVDFYYCAGTYNPDTGMLK 120 (121)
T ss_pred CcccEEEehhHheecccccC-----CCCcCCCEEEEeccCCCCcCccc
Confidence 99999999999977766542 23456679999999999998775
No 2
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.94 E-value=1.5e-27 Score=216.68 Aligned_cols=118 Identities=20% Similarity=0.399 Sum_probs=101.9
Q ss_pred CEEEEeccEEEEecCCCCCCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCCCCCCCCcccccccCcccccccce
Q 006527 512 GVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLI 589 (641)
Q Consensus 512 G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~v~~I 589 (641)
|.+||+||||||++++++.+| |+|++||++. +|.+|+.++||||||||.+..+| .+++||||+|.|.|++++++|
T Consensus 1 g~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~-~g~~~~~~~Wf~rP~et~~~~~~--~~~~~Evfls~~~d~~~~~~I 77 (121)
T cd04717 1 GLQYRVGDCVYVANPEDPSKPIIFRIERLWKDE-DGEKFFFGCWFYRPEETFHEPTR--KFYKNEVFKSPLYETVPVEEI 77 (121)
T ss_pred CCEEECCCEEEEeCCCCCCCCEEEEEeEEEECC-CCCEEEEEEEEeChHHccCCCcc--ccccCceEEcCccccccHHHh
Confidence 679999999999999887778 9999999986 58899999999999999875544 789999999999999999999
Q ss_pred ecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccccCC
Q 006527 590 RGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPVS 640 (641)
Q Consensus 590 egkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~p~~ 640 (641)
.|||.|++++.|.+.. +.....-++||||..||+.++.|.||=
T Consensus 78 ~~kc~Vl~~~~y~~~~--------p~~~~~~dvy~ce~~y~~~~~~~~~~k 120 (121)
T cd04717 78 VGKCAVMDVKDYIKGR--------PTEISEEDVYVCESRYNESAKSFKKIK 120 (121)
T ss_pred cCeeEEEehHHHhcCC--------CCCCCCCCEEEEeEEECcccccEeccc
Confidence 9999999999994331 111112269999999999999999974
No 3
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=6e-27 Score=220.82 Aligned_cols=128 Identities=24% Similarity=0.351 Sum_probs=109.4
Q ss_pred CCeeEEEEEEECCEEEEeccEEEEecCCCCCCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCCC-CCCCCcccc
Q 006527 500 DGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCP-CAPESNELY 576 (641)
Q Consensus 500 ~~k~~y~s~~~~G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr~-~~~~~nEvf 576 (641)
..|++|++++++|++|+|||||||++++. .+| |+|..||++.+ |.++|+|+|||||||+....++. ..+.+||||
T Consensus 6 ~~~~~y~s~~~dg~~y~vgD~Vlv~~~~~-~~pyI~~I~~i~~~~~-~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF 83 (146)
T cd04713 6 KKKCHYTSFEKDGNKYRLEDCVLLVPEDD-QKPYIAIIKDIYKQEE-GSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELF 83 (146)
T ss_pred cceeeeeeEEECCEEEECCCEEEEeCCCC-CCCEEEEEEEEEEcCC-CCEEEEEEeeECHHHhccccccccccCCCCeEE
Confidence 46899999999999999999999998876 777 99999999864 89999999999999997644332 345689999
Q ss_pred cccCcccccccceecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccccC
Q 006527 577 ESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 577 ~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~p~ 639 (641)
.|.|.|++++.+|.|||+|+.+.+|.++..+. ...+||||+.||..++.|-.|
T Consensus 84 ~S~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~----------~~~~F~cr~~yD~~~~~~~~~ 136 (146)
T cd04713 84 YSFHRDEVPAESVLHPCKVAFVPKGKQIPLRK----------GHSGFIVRRVYDNVNKKLWKL 136 (146)
T ss_pred EeCCCCcCCHHHCcceeEEEECCccccCCccC----------CCCeEEEEEEEcCCCCcEeec
Confidence 99999999999999999999888886544332 234899999999999988765
No 4
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=9.6e-27 Score=222.79 Aligned_cols=110 Identities=25% Similarity=0.337 Sum_probs=95.0
Q ss_pred eecCceeEEeCCeeEEEEEEECCEEEEeccEEEEecCCCCCCc--hhhhhhhccCC-CCceEEEeEeeccCCCCCCcCCC
Q 006527 490 QWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTG-TGSKWVMVNRCFFPGDLPEAVGC 566 (641)
Q Consensus 490 ~w~G~~~~~~~~k~~y~s~~~~G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~-~g~~~v~v~WyYrPE~t~~~~gr 566 (641)
.|.|.|.|.-+.+ +|+++.++|+.|++||||||++++ .+| |||.+||++.+ .|.++++|+|||||+||+....+
T Consensus 6 ~~~g~~~~~~~~~-~Y~s~~~~g~~y~lGD~Vlv~s~~--~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~~ 82 (159)
T cd04715 6 VKRGEGGKKKDGQ-FYRSFTYDGVEYRLYDDVYVHNGD--SEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELKG 82 (159)
T ss_pred eecccccccCCce-EEEEEEECCEEEeCCCEEEEeCCC--CCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhcccccc
Confidence 4999999985554 999999999999999999999865 677 99999999752 38999999999999999854333
Q ss_pred CCCCCCcccccccCcc-----cccccceecceEEeCCcchh
Q 006527 567 PCAPESNELYESNNES-----SVMAGLIRGPCEVLPPGKFK 602 (641)
Q Consensus 567 ~~~~~~nEvf~S~h~d-----~~~v~~IegkC~Vl~f~~y~ 602 (641)
.+.+++||||.|.|+| +|++++|.|||+|+++++|.
T Consensus 83 ~~~~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey~ 123 (159)
T cd04715 83 EPKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISEDF 123 (159)
T ss_pred CcccCCCcEEEecCcCccccccCcHHHccceeEEEEehHhh
Confidence 3578999999999974 57788999999999999994
No 5
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.92 E-value=3.6e-26 Score=215.98 Aligned_cols=92 Identities=24% Similarity=0.499 Sum_probs=84.9
Q ss_pred hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCCCCCCCCcccccccCcccccccceecceEEeCCcchhhhhhhhhccC
Q 006527 533 SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLG 612 (641)
Q Consensus 533 akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~ 612 (641)
|||++||++. |++||.++||||||||.+ ||..+|+++|||+|+|+|++++++|+|||.|++|++|.++.....+
T Consensus 56 ArIekiW~~~--G~~~~~grWy~rPEET~~--gr~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~e~~g~D-- 129 (148)
T cd04718 56 ARIEKLWEEN--GTYWYAARWYTLPEETHM--GRQPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRDASNDGDD-- 129 (148)
T ss_pred HHHHHHHhcc--CceEEEEEEEeCchhccC--ccccccccceeeeccccccccHHHHhcccEEcCHHHcccccCCCCc--
Confidence 9999999984 899999999999999874 7888999999999999999999999999999999999876655555
Q ss_pred CCCCCCCCCeEEEEEEeeccCCccccC
Q 006527 613 NEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 613 ~~~~~~~~p~F~Cr~~Yd~~~~~F~p~ 639 (641)
+||||++||+++|.|.+|
T Consensus 130 ---------vy~Ce~~Yd~~~~~Fkr~ 147 (148)
T cd04718 130 ---------VFLCEYEYDVHWQSFKRL 147 (148)
T ss_pred ---------eEEEEEEEhhhcCceeec
Confidence 999999999999999876
No 6
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.91 E-value=3.1e-25 Score=205.89 Aligned_cols=115 Identities=22% Similarity=0.264 Sum_probs=99.0
Q ss_pred EEECCEEEEeccEEEEecCCCCCCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCCCCC-CCCcccccccCcccc
Q 006527 508 CRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCA-PESNELYESNNESSV 584 (641)
Q Consensus 508 ~~~~G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr~~~-~~~nEvf~S~h~d~~ 584 (641)
++|||++|+|||||||++.+ ..| |+|++||++. +|.+||.|+|||||+|+.+. ++.. +.+||||.|.|.|++
T Consensus 1 ~~r~~~~i~vGD~V~v~~~~--~~~~va~Ie~i~ed~-~g~~~v~v~WF~~p~E~~~~--~~~~~~~~~EvFlS~~~d~i 75 (130)
T cd04721 1 FCRNGVTISVHDFVYVLSEE--EDRYVAYIEDLYEDK-KGSKMVKVRWFHTTDEVGAA--LSPDSVNPREIFLSPNLQVI 75 (130)
T ss_pred CccCCEEEECCCEEEEeCCC--CCcEEEEEEEEEEcC-CCCEEEEEEEecCHHHhccc--cCCCCCCCCeEEEcCCcccc
Confidence 47899999999999999876 555 9999999994 68899999999999998874 3444 999999999999999
Q ss_pred cccceecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccC
Q 006527 585 MAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELK 633 (641)
Q Consensus 585 ~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~ 633 (641)
++.+|.|||.||+++.|.++.....+ .....+||||+.||...
T Consensus 76 ~~~~I~gk~~Vls~~~y~k~~~~~~~------~~~~~~f~C~~~~d~~~ 118 (130)
T cd04721 76 SVECIDGLATVLTREHYEKFQSVPKN------SSELQAYFCYRQIDNNK 118 (130)
T ss_pred chHHeeeeeEECCHHHHhhhhccccC------ccccccEEEEEEecCCC
Confidence 99999999999999999877765432 24455999999999863
No 7
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.91 E-value=4e-25 Score=203.45 Aligned_cols=117 Identities=11% Similarity=0.179 Sum_probs=98.7
Q ss_pred CEEEEeccEEEEecCCCCCCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCC-CCCCCCcccccccCcccccccc
Q 006527 512 GVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGC-PCAPESNELYESNNESSVMAGL 588 (641)
Q Consensus 512 G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr-~~~~~~nEvf~S~h~d~~~v~~ 588 (641)
|++|++||+|++++++. .+| |||.+|||+ .+|.++++++||||||||.. || +.+++.+|||+|+|+|+|+++|
T Consensus 1 g~~~~lgD~V~v~~~~~-~~~yi~rI~~i~e~-~~g~~~~~v~WyyRpeet~~--~r~~~~~~~rEvFlS~~~D~~pl~~ 76 (122)
T cd04716 1 GITYNLGDDAYVQGGEG-EEPFICKITEFFEG-TDGKTYFTAQWFYRAEDTVI--ERQATNHDKKRVFYSEIKNDNPLDC 76 (122)
T ss_pred CcEEEcCCEEEEECCCC-CCCEEEEEEEEEEc-CCCceEEEEEEEEcHHHhcc--ccccccCCCceEEEecccCccchhh
Confidence 78999999999999975 667 999999997 56889999999999999874 66 5699999999999999999999
Q ss_pred eecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccccC
Q 006527 589 IRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 589 IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~p~ 639 (641)
|.+||.|+++..+..+.... .....-+||||+.|+..=.-|.-+
T Consensus 77 I~~Kc~V~~~~~~~~~~~~~-------~~~~~~df~c~~~Y~~~~~tF~~~ 120 (122)
T cd04716 77 LISKVKILQVPPNVGTKRKK-------PNSEKCDYYYDMEYCVPYSTFQTL 120 (122)
T ss_pred eeeeeEEEEeCCCCCccccc-------ccCCCceEEEeeEeccchhheEeC
Confidence 99999999999885552211 122334999999999988777543
No 8
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.91 E-value=7.6e-25 Score=193.32 Aligned_cols=118 Identities=29% Similarity=0.504 Sum_probs=101.2
Q ss_pred CEEEEeccEEEEecCCC--CCCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCCCCCCCCcccccccCccccccc
Q 006527 512 GVTYKVKDHVLLHSSNN--KLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAG 587 (641)
Q Consensus 512 G~~~rvgD~VLl~s~~~--~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~v~ 587 (641)
|.+|++||||||++++. ..+| |+|..||++. .|.+||+|+|||||+||++. ....+.+||||.|+|.|++.+.
T Consensus 1 g~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~-~~~~~~~v~wf~rp~e~~~~--~~~~~~~~Elf~s~~~~~i~v~ 77 (123)
T cd04370 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDT-NGSKQVKVRWFYRPEETPKG--LSPFALRRELFLSDHLDEIPVE 77 (123)
T ss_pred CCEEecCCEEEEecCCcCCCCCCEEEEEeeeeECC-CCCEEEEEEEEEchhHhccc--cccccccceeEEecCccccCHH
Confidence 78999999999999886 3555 9999999985 47899999999999999864 3347899999999999999999
Q ss_pred ceecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccccC
Q 006527 588 LIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 588 ~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~p~ 639 (641)
+|.|||.|+++..|.+... ......+.+||||+.||..++.|.++
T Consensus 78 ~I~gkc~V~~~~~~~~~~~-------~~~~~~~~~f~~r~~yd~~~~~fk~~ 122 (123)
T cd04370 78 SIIGKCKVLFVSEFEGLKQ-------RPNKIDTDDFFCRLAYDPTTKEFKAL 122 (123)
T ss_pred HhccccEEEechHhhcccc-------ccccCCCCeEEEEEEECcCcceEEeC
Confidence 9999999999999954432 22234567999999999999999876
No 9
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.90 E-value=9.2e-25 Score=193.66 Aligned_cols=115 Identities=28% Similarity=0.515 Sum_probs=97.4
Q ss_pred EEEEeccEEEEecCCCCCCc--hhhhhhhccCCCC-ceEEEeEeeccCCCCCCcCCCCCCCCCcccccccCcccccccce
Q 006527 513 VTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTG-SKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLI 589 (641)
Q Consensus 513 ~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g-~~~v~v~WyYrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~v~~I 589 (641)
++|++||||++++.++..+| |+|.+||++.+.+ .+||.|+|||||++|. .++ ...+||||+|+|.|++++++|
T Consensus 1 ~~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~~--~~~--~~~~~Elf~s~~~~~~~~~~I 76 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDTS--LGK--TFSPRELFLSDHCDDIPVESI 76 (119)
T ss_dssp EEEETTSEEEEECTSTTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGST--TGG--HSCTTEEEEEEEEEEEEGGGE
T ss_pred CEEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECccccc--ccc--cCCCCEEEEECcEeEEehhhE
Confidence 58999999999999987888 9999999997765 6999999999999982 122 445599999999999999999
Q ss_pred ecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccccC
Q 006527 590 RGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 590 egkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~p~ 639 (641)
.|||.|++++.|.+...... . .+..||||+.||..++.|.++
T Consensus 77 ~gkc~V~~~~~~~~~~~~~~-------~-~~~~F~cr~~yd~~~~~f~~~ 118 (119)
T PF01426_consen 77 RGKCNVLHLEDYEQARPYGK-------E-EPDTFFCRYAYDPQKKRFKKL 118 (119)
T ss_dssp EEEEEEEEHHHHTTGCCHCH-------H-TTTEEEEEEEEETTTTEEEE-
T ss_pred EeeeEEEECCcccccccccc-------C-CCCEEEEEEEEeCCcCEEeCC
Confidence 99999999999955543331 2 445999999999999999886
No 10
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.90 E-value=3.9e-24 Score=189.57 Aligned_cols=116 Identities=25% Similarity=0.408 Sum_probs=98.5
Q ss_pred EEEeccEEEEecCCCCCCc--hhhhhhhccCCCCc-eEEEeEeeccCCCCCCcCCCCCCCCCcccccccCccccccccee
Q 006527 514 TYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGS-KWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIR 590 (641)
Q Consensus 514 ~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~-~~v~v~WyYrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~v~~Ie 590 (641)
+|++|||||+++.+...++ |+|.+||++.+ |. +|++|+|||||+||++. +...+..||||+|+|+|++.+.+|.
T Consensus 1 ~~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~-~~~~~~~v~Wf~rp~e~~~~--~~~~~~~~Elf~s~~~~~i~~~~I~ 77 (120)
T smart00439 1 TIRVGDFVLVEPDDADEPYYIGRIEEIFETKK-NSEKMVRVRWFYRPEETVLE--KAALFDKNEVFLSDEYDTVPLSDII 77 (120)
T ss_pred CcccCCEEEEeCCCCCCCCEEEEEEEEEECCC-CCEEEEEEEEEEChhhcccc--ccccCCCcceEEEccCccCChHHee
Confidence 4899999999999966677 99999999865 55 89999999999999874 4447789999999999999999999
Q ss_pred cceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccccC
Q 006527 591 GPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 591 gkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~p~ 639 (641)
|||.|++++.|.+.... ......+.||||+.||..++.|.++
T Consensus 78 ~kc~V~~~~~~~~~~~~-------~~~~~~~~f~cr~~yd~~~~~f~~~ 119 (120)
T smart00439 78 GKCNVLSKSDYPGLRPE-------GKIGEPDVFFCESLYDPEKGAFKKL 119 (120)
T ss_pred eEEEEEEcchhcccccc-------cCCCCCCeEEEEEEEccccCcccCC
Confidence 99999999999443221 1123567999999999999999886
No 11
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.87 E-value=8.6e-23 Score=196.57 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=97.2
Q ss_pred CEEEEeccEEEEecCCCCCCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCc------CCCCCC--------------
Q 006527 512 GVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEA------VGCPCA-------------- 569 (641)
Q Consensus 512 G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~------~gr~~~-------------- 569 (641)
+.+|||||||+|.+++ ..++ +||+.||++. +|.++|+|+|||||+|++.. .+|..+
T Consensus 1 ~~~yrvGD~Vy~~~~~-~~Py~I~rI~e~~~~~-~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~ 78 (164)
T cd04709 1 ANMYRVGDYVYFESSP-NNPYLIRRIEELNKTA-RGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQ 78 (164)
T ss_pred CcEEecCCEEEEECCC-CCCCEEEEEEEEEeCC-CCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhc
Confidence 3689999999999994 3445 9999999975 67899999999999998653 343322
Q ss_pred CCCcccccccCcccccccceecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccccC
Q 006527 570 PESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 570 ~~~nEvf~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~p~ 639 (641)
...+|||+|+|.|.++|++|+|||.|++++.|..+..-. .....|||+..||+.++.|...
T Consensus 79 ~~~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~~~~---------~~~d~Ff~~~~YDP~~k~l~~~ 139 (164)
T cd04709 79 LRHRELFLSRQVETLPATHIRGKCSVTLLNDTESARSYL---------AREDTFFYSLVYDPEQKTLLAD 139 (164)
T ss_pred cCcceeEEecccccccHHHeeeeEEEEEehhhhhhhhcc---------CCCCEEEEEEEECCCCCeeccc
Confidence 368999999999999999999999999999997774432 2345999999999999998764
No 12
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.87 E-value=1.7e-22 Score=196.71 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=104.4
Q ss_pred EEEE-CCEEEEeccEEEEecCCCCCCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCCCCCCC-------Ccccc
Q 006527 507 SCRI-GGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPE-------SNELY 576 (641)
Q Consensus 507 s~~~-~G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr~~~~~-------~nEvf 576 (641)
.... +|..|||||||||++++. .+| |.|..||++..++.+.+.|.|||||+|.......+++++ +||||
T Consensus 44 l~R~~d~~~~~vGD~Vlik~~~~-~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElf 122 (179)
T cd04720 44 LARDSDGLELSVGDTILVKDDVA-NSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELY 122 (179)
T ss_pred EEEccCCeEEeCCCEEEEeCCCC-CCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEE
Confidence 4444 899999999999999876 666 999999998665778999999999999865443345776 79999
Q ss_pred cccCcccccccceecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccccC
Q 006527 577 ESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 577 ~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~p~ 639 (641)
.|.|+|++++.+|.|||.||++++|.++..... ...-+||||+.||..++.|.++
T Consensus 123 lT~~~d~i~l~~Ii~k~~Vls~~ef~~~~~~~~--------~~~~~F~cR~~~d~~~~~F~~~ 177 (179)
T cd04720 123 LTAELSEIKLKDIIDKANVLSESEFNDLSTDDK--------NGERTFFCRYACEPDGEEFVWI 177 (179)
T ss_pred EecccceEEhhheeeeEEEecHHHhhhhccccc--------CCCceEEEEEEEeCCCCeEccc
Confidence 999999999999999999999999976654411 1233999999999999999986
No 13
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.82 E-value=1.5e-20 Score=174.70 Aligned_cols=112 Identities=24% Similarity=0.281 Sum_probs=95.5
Q ss_pred ECCEEEEeccEEEEecCCCC----------CCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCCCCCCCCccccc
Q 006527 510 IGGVTYKVKDHVLLHSSNNK----------LMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYE 577 (641)
Q Consensus 510 ~~G~~~rvgD~VLl~s~~~~----------~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr~~~~~~nEvf~ 577 (641)
+.|..|+|||+|+++..+.+ .+| ++|+.||++. +|++|+.++|||||+||.. |+ .+.+||||+
T Consensus 1 ~~~~~i~vGD~V~v~~d~~~~~~~~~~~~~~~~~i~~V~~~~e~~-~g~~~~h~~W~yrp~eTv~--g~--~~~~~ElFL 75 (130)
T cd04712 1 IHGLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKKGS-DGSKMFHGRWLYRGCDTVL--GN--YANERELFL 75 (130)
T ss_pred CCCCEEeCCCEEEEcCCCCCccccccccccccceEEEEEEeeecC-CCceEEEEEEEEcchhccc--cc--cCCCceEEE
Confidence 36889999999999998866 366 9999999985 6889999999999999874 66 999999999
Q ss_pred ccCccccccc----ceecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccccC
Q 006527 578 SNNESSVMAG----LIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 578 S~h~d~~~v~----~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~p~ 639 (641)
|+|.++++++ +|.+||.|+-|..+.. ...+..|+|+..|++.+++|..+
T Consensus 76 Sd~c~~~~~~~~~~~I~~k~~V~~~~~~~~-------------~~~~~~F~r~syy~~e~~~F~~l 128 (130)
T cd04712 76 TNECTCLELDLLSTEIKGVHKVDWSGTPWG-------------KGLPEFFVRQSYYWPERGAFTSL 128 (130)
T ss_pred eccccccccccccceeEEEEEEEEecCcCC-------------cCCCCEEEEEEEECccCCceEcC
Confidence 9999999999 9999999998877732 23344677777777799999865
No 14
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=1.7e-20 Score=209.12 Aligned_cols=121 Identities=23% Similarity=0.450 Sum_probs=115.9
Q ss_pred EEECCEEEEeccEEEEecCCCCCCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCCCCCCCCcccccccCccccc
Q 006527 508 CRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVM 585 (641)
Q Consensus 508 ~~~~G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~ 585 (641)
|.|+|..|.||||||+++.++...| ++|+++|++ .+|++|+..+||||||+|.|+++| .++++|||++..++.++
T Consensus 184 ~~i~~~~~~~gd~vlv~~~~d~~~p~v~~Ier~w~~-~dg~k~~~~~w~~rP~~T~H~a~r--~F~k~Evfkt~~~~~~~ 260 (629)
T KOG1827|consen 184 VEIDGTKYIVGDYVLVQNPADNLKPIVAQIERLWKL-PDGEKWPQGCWIYRPEETVHRADR--KFYKQEVFKTSLYRDDL 260 (629)
T ss_pred ccccCcccccCceeeecCcccccCCceeeecccccC-cccccccceeEeeCCccCcccccc--chhcccceecccccccH
Confidence 8999999999999999999987777 999999998 579999999999999999999999 89999999999999999
Q ss_pred ccceecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccccC
Q 006527 586 AGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 586 v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~p~ 639 (641)
++-|.|+|||.++++| ..+++.+....++|+|+++||+.++.|+++
T Consensus 261 ~q~l~g~c~v~~~~~y--------i~~~p~~ls~~dv~lcesRyn~~~K~f~ki 306 (629)
T KOG1827|consen 261 VQRLLGKCYVMKPTEY--------ISGDPENLSEEDVFLCESRYNEQLKKFNKI 306 (629)
T ss_pred HHHhhcceEEeehhHh--------hhcCcccccccceeeEEeeeccchhhhccc
Confidence 9999999999999999 777888889999999999999999999987
No 15
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.78 E-value=2e-19 Score=168.30 Aligned_cols=116 Identities=20% Similarity=0.239 Sum_probs=96.1
Q ss_pred EEECCEEEEeccEEEEecCCCCCCc--hhhhhhhccCC-----------CCceEEEeEeeccCCCCCCcCCCCCCCCCcc
Q 006527 508 CRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTG-----------TGSKWVMVNRCFFPGDLPEAVGCPCAPESNE 574 (641)
Q Consensus 508 ~~~~G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~-----------~g~~~v~v~WyYrPE~t~~~~gr~~~~~~nE 574 (641)
+..+|++|++||||+|.+.+...|. |||..||...+ .+...|+|+|||||||+. +++ .+..+|
T Consensus 5 ~~~~g~~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~---~~~-~~d~re 80 (135)
T cd04710 5 VLKNGELLKVNDHIYMSSEPPGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDIS---RRV-VADSRL 80 (135)
T ss_pred EccCCeEEeCCCEEEEecCCCCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcC---Ccc-cCCceE
Confidence 3568999999999999999886666 99999999542 234689999999999974 343 678999
Q ss_pred cccccCcccccccceecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCcc
Q 006527 575 LYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVF 636 (641)
Q Consensus 575 vf~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F 636 (641)
||+|.|.|..++++|+|||.|++.+.+..+..-. ..+..|||...||.-++.|
T Consensus 81 lf~S~h~d~~p~~si~gKC~V~~~~di~~l~~~~---------~~~~~Fyf~~lyD~~~~r~ 133 (135)
T cd04710 81 LYASMHSDICPIGSVRGKCTVRHRDQIPDLEEYK---------KRPNHFYFDQLFDRYILRY 133 (135)
T ss_pred EEEEeeEeeechHHEEeEEEEEEecccchhhhhc---------cCCCEEEEEeeeCcchhhc
Confidence 9999999999999999999999999874433322 2244899999999998877
No 16
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.77 E-value=5.6e-19 Score=163.39 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=96.8
Q ss_pred CEEEEeccEEEEecCCCCCCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCCCCCCCCcccccccCcccccccce
Q 006527 512 GVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLI 589 (641)
Q Consensus 512 G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~v~~I 589 (641)
|++|++||||++++.+...+| |+|..|||+. +|++|+.++|||||+||. .|+ .+.++|||+|+|++++++++|
T Consensus 1 g~~i~vGD~V~v~~~~~~~p~~I~rV~~mfe~~-~g~k~~h~rWf~Rg~dTV--lG~--~~~~kEvFlsd~c~d~~l~~I 75 (124)
T cd04760 1 GEELEAGDCVSVKPDDPTKPLYIARVTYMWKDS-IGGKMFHAHWFCRGSDTV--LGE--TSDPLELFLVDECEDMALSSI 75 (124)
T ss_pred CCEEecCCEEEEecCCCCCCcEEEEEhhheecC-CCCcEEEEEEEEECCccc--ccc--cCCCcEEEeecccCCcchHHh
Confidence 789999999999999887888 9999999985 477999999999999976 577 699999999999999999999
Q ss_pred ecceEEeCCc---chhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCcc
Q 006527 590 RGPCEVLPPG---KFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVF 636 (641)
Q Consensus 590 egkC~Vl~f~---~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F 636 (641)
.+||.|+.-. ..- -..+.+........++..|||+.-||+...-|
T Consensus 76 ~~Kv~V~~~~p~~~w~--~~~g~~~~~~~~~ddg~tffyq~~yd~~~arf 123 (124)
T cd04760 76 HGKVNVIYKAPSENWS--MEGGMDEEDEIFEDDGKTFFYQKWYDPECARF 123 (124)
T ss_pred eeeeEEEEeCCCcchh--hhcCCCCccccccCCCCeEEEEEeeChhhhcc
Confidence 9999999743 111 11111334444557778999999999976555
No 17
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.77 E-value=3.3e-19 Score=176.54 Aligned_cols=120 Identities=25% Similarity=0.414 Sum_probs=94.8
Q ss_pred EECCEEEEeccEEEEecC----------------CCCCCc---hhhhhhhccCCC-----CceEEEeEeeccCCCCCCcC
Q 006527 509 RIGGVTYKVKDHVLLHSS----------------NNKLMP---SKLQTMWEDTGT-----GSKWVMVNRCFFPGDLPEAV 564 (641)
Q Consensus 509 ~~~G~~~rvgD~VLl~s~----------------~~~~~P---akI~~lWe~~~~-----g~~~v~v~WyYrPE~t~~~~ 564 (641)
.++|++|+|||.|-+++. +-..+| +||-.|-+..++ .+..|+|+||||||+|..
T Consensus 2 ~~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~-- 79 (202)
T cd04708 2 VYDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSP-- 79 (202)
T ss_pred cCCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCc--
Confidence 579999999999999998 112346 777777653333 378999999999999732
Q ss_pred CCCCCCCCcccccccCcccccccceecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccccC
Q 006527 565 GCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 565 gr~~~~~~nEvf~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~p~ 639 (641)
.+.-....+|||.|+|.+++++.+|+|||+|+.+..+.++.. ....+.+|||++.||+.||.|..+
T Consensus 80 ~~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~~---------~~~~~~~Ffc~~~Yd~~tg~f~~l 145 (202)
T cd04708 80 EKAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSDA---------PVIFEHVFFCELLYDPAKGSLKQL 145 (202)
T ss_pred ccceecCceeEEEeccceeechhHcceEEEEEecCcchhhhc---------cccCCCceEEEEEEcCCCCccCCC
Confidence 233344899999999999999999999999999999855532 123366999999999999999753
No 18
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.75 E-value=1.8e-18 Score=160.77 Aligned_cols=108 Identities=23% Similarity=0.383 Sum_probs=86.6
Q ss_pred EEEEeccEEEEecCCCCCCc--hhhhhhhccCCC--CceEEEeEeeccCCCCCC----cCCCCCCCCCcccccccCc---
Q 006527 513 VTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGT--GSKWVMVNRCFFPGDLPE----AVGCPCAPESNELYESNNE--- 581 (641)
Q Consensus 513 ~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~--g~~~v~v~WyYrPE~t~~----~~gr~~~~~~nEvf~S~h~--- 581 (641)
.+|+|||||||++.+. ..| |||++||++.+. ....+.|+|||||++.+. ..|| .+..+|||.++|+
T Consensus 2 ~~i~vGd~VlI~~~d~-~~~yVAkI~~i~e~~~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~--~~~~~EvF~~~~~~~~ 78 (128)
T cd04719 2 LTIEVGDFVLIEGEDA-DGPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEVPKNKRKLLGR--EPHSQEVFFYSRSSCD 78 (128)
T ss_pred eEEecCCEEEEECCCC-CCCcEeeehhhhccccCCcccceEEEEcccChHHccccchhhccC--CCCCcEEEEecCcccc
Confidence 4899999999999997 667 999999998542 256999999999999853 3445 4589999999997
Q ss_pred ccccccceecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEee
Q 006527 582 SSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYD 630 (641)
Q Consensus 582 d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd 630 (641)
++.+|.+|.|||.||+++.|..+.. .+.+...+.|++|+...
T Consensus 79 ~~i~~etI~gkc~V~~~~~y~~l~~-------~~~~~~~~~F~r~~~~~ 120 (128)
T cd04719 79 NDIDAETIIGKVRVEPVEPKTDLPE-------TKKKTGGPLFVKRYWDT 120 (128)
T ss_pred CcEeHHHcccEEEEEEcCCccchhh-------hccccCceEEEEEEecc
Confidence 4999999999999999999976653 11133455888887654
No 19
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=99.70 E-value=5.1e-18 Score=183.83 Aligned_cols=139 Identities=22% Similarity=0.309 Sum_probs=117.5
Q ss_pred eeecCceeEEeCC----e-eEEEEEEECCEEEEeccEEEEecCCCCCCc--hhhhhhhccCCCCceEEEeEeeccCCCCC
Q 006527 489 VQWIGDVLQIVDG----K-KFYQSCRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLP 561 (641)
Q Consensus 489 ~~w~G~~~~~~~~----k-~~y~s~~~~G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~ 561 (641)
|.|.|+..+.-|+ | .+++....+|..+..+|.|||.+.+.+.+| |.|..||.+.+.+.++|.|.||||||+.+
T Consensus 20 a~~~g~a~~~qGv~~~k~~h~~t~~~~~g~~~~~~d~vllvped~~~pPyvaii~~i~a~~~g~~~k~ev~W~YrPee~~ 99 (464)
T KOG1886|consen 20 ASSMGDANKEQGVGGVKSLHFETFIYRGGRYINYGDSVLLVPEDPGKPPYVAIIEDIYAQERGGNVKVEVQWFYRPEESE 99 (464)
T ss_pred hhhhhhhhhhccccccccccccceeeccCcccccCcceeecCCCCCCCCeeEEEeeeeccccCCCcceecccccCCCccC
Confidence 7888877766652 3 355555566666666999999999988888 99999999998889999999999999976
Q ss_pred CcCCCCCCCCCc---ccccccCcccccccceecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCcccc
Q 006527 562 EAVGCPCAPESN---ELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRP 638 (641)
Q Consensus 562 ~~~gr~~~~~~n---Evf~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~p 638 (641)
+ ++..+++.. |||.|.|.|++.|++|.+||.|+.|..|+++-.|+.. +.|+||++||.-++.|.+
T Consensus 100 ~--~~~~~~~a~~~relF~SfH~De~~A~ti~~rC~V~fvp~~kqlp~~~~~----------~~f~~r~vYd~~~~~~~~ 167 (464)
T KOG1886|consen 100 G--GGSGKWGAKQPRELFLSFHEDEAFAETILHRCKVHFVPAYKQLPNRVGH----------ESFICRRVYDAVTSKLRK 167 (464)
T ss_pred C--CCCCCcccCCCccccccccccchhhhhhcccceeeeccccccccccCCC----------CCcccccccccccccccC
Confidence 4 455577766 9999999999999999999999999999888776533 589999999999999876
Q ss_pred C
Q 006527 639 V 639 (641)
Q Consensus 639 ~ 639 (641)
.
T Consensus 168 ~ 168 (464)
T KOG1886|consen 168 L 168 (464)
T ss_pred c
Confidence 4
No 20
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.65 E-value=4.1e-17 Score=152.71 Aligned_cols=89 Identities=17% Similarity=0.284 Sum_probs=73.6
Q ss_pred hhhhhhhccCCCC------ceEEEeEeeccCCCCCCcCCCCC-CCCC-cccccccCcccccccceecceEEe-------C
Q 006527 533 SKLQTMWEDTGTG------SKWVMVNRCFFPGDLPEAVGCPC-APES-NELYESNNESSVMAGLIRGPCEVL-------P 597 (641)
Q Consensus 533 akI~~lWe~~~~g------~~~v~v~WyYrPE~t~~~~gr~~-~~~~-nEvf~S~h~d~~~v~~IegkC~Vl-------~ 597 (641)
|||..|--..+++ +.+|+|+||||||++.. ||.. +|.. +|||.|.|.|..++.+|+|||+|+ .
T Consensus 30 grI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~--g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~~~~di~~s 107 (137)
T cd04711 30 GRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHK--GFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGEDLPES 107 (137)
T ss_pred EEEEEEecCCCCCCCCCccceEEEEEEEeccccccc--ccccccccceeeEEeecceeecChhhccceEEEEeccccchh
Confidence 8888887765555 67999999999999753 4444 6776 999999999999999999999999 5
Q ss_pred CcchhhhhhhhhccCCCCCCCCCCeEEEEEEeeccCCccc
Q 006527 598 PGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFR 637 (641)
Q Consensus 598 f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~Yd~~~~~F~ 637 (641)
|..| ..++.+ .|+||+.||..||.|.
T Consensus 108 ~~~y---~~~gpd-----------~Fyf~~~Y~a~t~~F~ 133 (137)
T cd04711 108 VQEY---SGGGPD-----------RFYFLEAYNAKTKSFE 133 (137)
T ss_pred HHHH---hcCCCc-----------ceEEhhhhccccCccc
Confidence 6666 223333 9999999999999996
No 21
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=99.02 E-value=3.4e-10 Score=133.45 Aligned_cols=121 Identities=21% Similarity=0.396 Sum_probs=95.7
Q ss_pred cccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccccCCCCCCCCccccccc-ccc-----
Q 006527 219 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPLPPKYGRVMRS-INT----- 292 (641)
Q Consensus 219 ~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~~~gk~l~p~yGfv~r~-~~s----- 292 (641)
....|..|.++..+ ..+ +||+|++.||.+|+.| ++..++++ +|.|+.|+..... .....|||.++. .|+
T Consensus 154 ~~~~~~~~~k~~~~-~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~-~~~~~~gf~~~~~~yt~~~f~ 228 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEE-KLL-LCDSCDDSYHTYCLRP-PLTRVPDG-DWRCPKCIPTPES-KPNYKFGFEQGSREYTLPKFE 228 (904)
T ss_pred cchhhhccccCCCc-cce-ecccccCcccccccCC-CCCcCCcC-cccCCcccccccC-CcccccCcCCCCCccccchhh
Confidence 45779999998776 455 9999999999999999 89999999 9999999987332 224588999877 555
Q ss_pred ----------cCCCCCCCCCCcchhhhhccccccccCcceEEEcCCCCCCCCCCCccCCCCcc
Q 006527 293 ----------TKMPSNTSVIQSPSDKKFISVDQKVNNQQKITVNGSSGGSGALGSNSNDCDLK 345 (641)
Q Consensus 293 ----------fK~p~~~~~~~~~vEkEFWrLV~~~~~ee~vVeYGADIhs~~~GSGFPt~d~~ 345 (641)
|............+|++||+++.... .++.|+||||+++..+|+|||.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~vE~e~w~~v~~~~-~~~~~~~g~d~~~~~~~s~~~~~~~~ 290 (904)
T KOG1246|consen 229 EYADNFKKDYFPKSKNSPDSTEDVEKEFWRLVASNL-ESVEVLYGADLSTKEFGSGFPKSASG 290 (904)
T ss_pred hHhhhhhccccccccCCCCchHHHHHHHHHhhcccc-cceeeeeccchhhccccccccccCCC
Confidence 11122222224579999999998874 67779999999999999999987755
No 22
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.99 E-value=1.5e-10 Score=118.88 Aligned_cols=53 Identities=32% Similarity=0.906 Sum_probs=49.1
Q ss_pred ccccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 218 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 218 ~~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
.+...|.+|+..+++ ++||+||.||+|||||||.| +|.+.|+| .|-|..|+..
T Consensus 279 ieck~csicgtsend-dqllfcddcdrgyhmyclsp-pm~eppeg-swsc~KOG~~ 331 (336)
T KOG1244|consen 279 IECKYCSICGTSEND-DQLLFCDDCDRGYHMYCLSP-PMVEPPEG-SWSCHLCLEE 331 (336)
T ss_pred eecceeccccCcCCC-ceeEeecccCCceeeEecCC-CcCCCCCC-chhHHHHHHH
Confidence 367889999999887 99999999999999999999 89999999 9999999864
No 23
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.88 E-value=5.2e-10 Score=126.75 Aligned_cols=52 Identities=35% Similarity=0.902 Sum_probs=47.8
Q ss_pred cccccccccCCCCCCCceEEecCCCCc-ccccccCCccCCCCCCCCCccccccccc
Q 006527 219 KAFTCQICKLTANEVETVVLCDACEKG-FHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 219 ~d~~C~VC~~~~de~~~LLlCD~Cd~g-yHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
+...|.+|...+.+ +.|||||+|+.+ ||+|||+| +|.++|.+ +|||+.|.-.
T Consensus 214 E~~~C~IC~~~DpE-dVLLLCDsCN~~~YH~YCLDP-dl~eiP~~-eWYC~NC~dL 266 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPE-DVLLLCDSCNKVYYHVYCLDP-DLSESPVN-EWYCTNCSLL 266 (1134)
T ss_pred ccccceeeccCChH-HhheeecccccceeeccccCc-cccccccc-ceecCcchhh
Confidence 44779999999888 999999999999 99999999 89999999 9999999654
No 24
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.73 E-value=3.3e-09 Score=82.67 Aligned_cols=48 Identities=29% Similarity=0.925 Sum_probs=40.2
Q ss_pred ccccccCCCCCCCceEEecCCCCcccccccCCccCC--CCCCCCCcccccccc
Q 006527 222 TCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQK--GIPRGGEWHCMSCLK 272 (641)
Q Consensus 222 ~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~--~VP~G~dW~Cp~C~~ 272 (641)
+|.+|+..+++ +.||.||.|+++||+.|+.| ++. .++.+ .|+|+.|..
T Consensus 1 ~C~vC~~~~~~-~~~i~C~~C~~~~H~~C~~~-~~~~~~~~~~-~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDD-GDMIQCDSCNRWYHQECVGP-PEKAEEIPSG-DWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTT-SSEEEBSTTSCEEETTTSTS-SHSHHSHHSS-SBSSHHHHH
T ss_pred eCcCCCCcCCC-CCeEEcCCCChhhCcccCCC-ChhhccCCCC-cEECcCCcC
Confidence 58999985554 99999999999999999999 454 55566 899999974
No 25
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.50 E-value=3.9e-08 Score=102.03 Aligned_cols=56 Identities=32% Similarity=0.824 Sum_probs=49.1
Q ss_pred CCCCCChhccccccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCcccc-cccccc
Q 006527 208 TWTPPSREYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCM-SCLKLS 274 (641)
Q Consensus 208 ~W~~ps~e~~~~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp-~C~~~~ 274 (641)
.|.+. ++..|.+|++...+ +++++||.||+|||++|+ +|..+|.| .|.|. .|....
T Consensus 308 ~W~C~------~C~lC~IC~~P~~E-~E~~FCD~CDRG~HT~CV---GL~~lP~G-~WICD~~C~~~~ 364 (381)
T KOG1512|consen 308 FWKCS------SCELCRICLGPVIE-SEHLFCDVCDRGPHTLCV---GLQDLPRG-EWICDMRCREAT 364 (381)
T ss_pred chhhc------ccHhhhccCCcccc-hheeccccccCCCCcccc---ccccccCc-cchhhhHHHHhc
Confidence 37774 57889999999998 999999999999999999 89999999 99998 566543
No 26
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.44 E-value=6.5e-08 Score=108.65 Aligned_cols=51 Identities=31% Similarity=0.776 Sum_probs=45.5
Q ss_pred cccccccCCCCCCCceEEecCCCCcccccccCCcc--CCCCCCCCCcccccccccc
Q 006527 221 FTCQICKLTANEVETVVLCDACEKGFHLKCLQMNN--QKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 221 ~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~Ppp--L~~VP~G~dW~Cp~C~~~~ 274 (641)
++|..|++.+.- ..+|+||+|+++||++||+| | .+.+|.| .|||+.|....
T Consensus 254 ~fCsaCn~~~~F-~~~i~CD~Cp~sFH~~CLeP-Pl~~eniP~g-~W~C~ec~~k~ 306 (613)
T KOG4299|consen 254 DFCSACNGSGLF-NDIICCDGCPRSFHQTCLEP-PLEPENIPPG-SWFCPECKIKS 306 (613)
T ss_pred HHHHHhCCcccc-ccceeecCCchHHHHhhcCC-CCCcccCCCC-ccccCCCeeee
Confidence 599999998665 67899999999999999999 6 5789999 99999998754
No 28
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.21 E-value=2e-07 Score=114.06 Aligned_cols=65 Identities=34% Similarity=0.842 Sum_probs=56.9
Q ss_pred CCCCCCCCCCChhccccccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccccC
Q 006527 203 LPQHPTWTPPSREYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSN 275 (641)
Q Consensus 203 l~~~~~W~~ps~e~~~~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~~~ 275 (641)
++..+.|.... ....|.+|++...+ +.|++||.|+.+||++|+.| .+..+|.| +|+|+.|+....
T Consensus 1096 l~~~i~w~~s~-----~~~~c~~cr~k~~~-~~m~lc~~c~~~~h~~C~rp-~~~~~~~~-dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1096 LEAEIKWDRSA-----VNALCKVCRRKKQD-EKMLLCDECLSGFHLFCLRP-ALSSVPPG-DWMCPSCRKEHR 1160 (1404)
T ss_pred HHHHHhhcccc-----chhhhhhhhhcccc-hhhhhhHhhhhhHHHHhhhh-hhccCCcC-CccCCccchhhh
Confidence 34567798875 55789999998775 89999999999999999999 89999999 999999998653
No 29
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.18 E-value=8.2e-07 Score=85.15 Aligned_cols=33 Identities=39% Similarity=0.873 Sum_probs=29.3
Q ss_pred cccccccCCccCCCCCCCCCccccccccccCCCCC
Q 006527 245 GFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPL 279 (641)
Q Consensus 245 gyHl~CL~PppL~~VP~G~dW~Cp~C~~~~~gk~l 279 (641)
|||++||+| ||+.+|+| +|+||.|.....++.+
T Consensus 1 g~H~~CL~P-pl~~~P~g-~W~Cp~C~~~~~~~~~ 33 (148)
T cd04718 1 GFHLCCLRP-PLKEVPEG-DWICPFCEVEKSGQSA 33 (148)
T ss_pred CcccccCCC-CCCCCCCC-CcCCCCCcCCCCCCcc
Confidence 799999999 89999999 9999999987765553
No 30
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=98.08 E-value=1.3e-06 Score=90.91 Aligned_cols=49 Identities=31% Similarity=0.819 Sum_probs=39.1
Q ss_pred cccccccccCCCCCCCceEEecC--CC-CcccccccCCccCCCCCCCCCcccccccccc
Q 006527 219 KAFTCQICKLTANEVETVVLCDA--CE-KGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 219 ~d~~C~VC~~~~de~~~LLlCD~--Cd-~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~~ 274 (641)
+..+| +|... . .+.|+-||. |+ .|||+.|. +|+.-|+| .|||+.|....
T Consensus 218 e~~yC-~Cnqv-s-yg~Mi~CDn~~C~~eWFH~~CV---GL~~~Pkg-kWyC~~C~~~~ 269 (274)
T KOG1973|consen 218 EPTYC-ICNQV-S-YGKMIGCDNPGCPIEWFHFTCV---GLKTKPKG-KWYCPRCKAEN 269 (274)
T ss_pred CCEEE-Eeccc-c-cccccccCCCCCCcceEEEecc---ccccCCCC-cccchhhhhhh
Confidence 33445 44432 2 389999998 99 99999999 88999999 89999998754
No 31
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.01 E-value=2.3e-06 Score=96.84 Aligned_cols=58 Identities=26% Similarity=0.788 Sum_probs=51.8
Q ss_pred CCCCCCChhccccccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 207 PTWTPPSREYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 207 ~~W~~ps~e~~~~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
-.|.++ .+..|..|+...++ .++++|++||-.||.||+.| +++.||.| .|+|+.|...
T Consensus 61 ~gWrC~------~crvCe~c~~~gD~-~kf~~Ck~cDvsyh~yc~~P-~~~~v~sg-~~~ckk~~~c 118 (694)
T KOG4443|consen 61 GGWRCP------SCRVCEACGTTGDP-KKFLLCKRCDVSYHCYCQKP-PNDKVPSG-PWLCKKCTRC 118 (694)
T ss_pred CCcccC------CceeeeeccccCCc-ccccccccccccccccccCC-ccccccCc-ccccHHHHhh
Confidence 349997 47899999988886 89999999999999999999 89999999 9999999653
No 32
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.81 E-value=9.9e-06 Score=83.38 Aligned_cols=45 Identities=38% Similarity=1.007 Sum_probs=38.5
Q ss_pred cccccccCCCCCCCceEEecC--CCC-cccccccCCccCCCCCCCCCcccccccc
Q 006527 221 FTCQICKLTANEVETVVLCDA--CEK-GFHLKCLQMNNQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 221 ~~C~VC~~~~de~~~LLlCD~--Cd~-gyHl~CL~PppL~~VP~G~dW~Cp~C~~ 272 (641)
.+| -|++..- +.||-||+ |.+ |||+-|+ +|++.|+| .|||+.|..
T Consensus 222 lYC-fCqqvSy--GqMVaCDn~nCkrEWFH~~CV---GLk~pPKG-~WYC~eCk~ 269 (271)
T COG5034 222 LYC-FCQQVSY--GQMVACDNANCKREWFHLECV---GLKEPPKG-KWYCPECKK 269 (271)
T ss_pred eEE-Eeccccc--ccceecCCCCCchhheecccc---ccCCCCCC-cEeCHHhHh
Confidence 444 7887643 89999997 886 9999999 89999999 999999975
No 33
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.76 E-value=1.6e-05 Score=95.08 Aligned_cols=54 Identities=30% Similarity=0.738 Sum_probs=45.8
Q ss_pred cccccccccccCCCCCC-CceEEecCCCCcccccccCCccCCCCCCCCCcccccccccc
Q 006527 217 MSKAFTCQICKLTANEV-ETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 217 ~~~d~~C~VC~~~~de~-~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~~ 274 (641)
.+.+.+|.||..++-.. +.+|+||+|+..+|+.|+. +.-+|+| .|+|.+|+...
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg---i~~ipeg-~WlCr~Cl~s~ 270 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG---IPFIPEG-QWLCRRCLQSP 270 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccC---CCCCCCC-cEeehhhccCc
Confidence 35678999999886532 7899999999999999996 4479999 99999998754
No 34
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.67 E-value=1.8e-05 Score=87.57 Aligned_cols=62 Identities=26% Similarity=0.584 Sum_probs=46.6
Q ss_pred CCCCCCCChhccccccccccccCCCC-CCCceEEecCCCCcccccccCCccCC----CCCCCCCccccccccc
Q 006527 206 HPTWTPPSREYMSKAFTCQICKLTAN-EVETVVLCDACEKGFHLKCLQMNNQK----GIPRGGEWHCMSCLKL 273 (641)
Q Consensus 206 ~~~W~~ps~e~~~~d~~C~VC~~~~d-e~~~LLlCD~Cd~gyHl~CL~PppL~----~VP~G~dW~Cp~C~~~ 273 (641)
..+|+... .-+..|.+|..+.. ++++||.|++|..|||+-|++|+ ++ .-|.. +|||..|..+
T Consensus 158 ~l~wD~~~----~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~-i~~~l~~D~~~-~w~C~~C~~~ 224 (464)
T KOG4323|consen 158 SLDWDSGH----KVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPL-IKDELAGDPFY-EWFCDVCNRG 224 (464)
T ss_pred ccccCccc----cccceeeeeecCCcCccceeeeecccccHHHHHhccCC-CCHhhccCccc-eEeehhhccc
Confidence 34576643 23345999997765 34899999999999999999994 43 34556 7999999874
No 35
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.64 E-value=1.5e-05 Score=88.17 Aligned_cols=50 Identities=30% Similarity=0.883 Sum_probs=44.3
Q ss_pred ccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCC---Cccccccc
Q 006527 220 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGG---EWHCMSCL 271 (641)
Q Consensus 220 d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~---dW~Cp~C~ 271 (641)
...|.||++..+. ..++.||.|...||+.||+| ||+.+|+.. -|.|..|-
T Consensus 544 ~ysCgiCkks~dQ-Hll~~CDtC~lhYHlGCL~P-PLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 544 NYSCGICKKSTDQ-HLLTQCDTCHLHYHLGCLSP-PLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ceeeeeeccchhh-HHHhhcchhhceeeccccCC-ccccCcccccCcceeecccc
Confidence 4679999998775 88999999999999999999 899999863 29999994
No 36
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.51 E-value=4.8e-05 Score=87.28 Aligned_cols=67 Identities=28% Similarity=0.680 Sum_probs=53.9
Q ss_pred cccccccccCCCCC-CCceEEecCCCCcccccccCCccCCCCCCCCCccccccccccCCCC-CCCCccccccc
Q 006527 219 KAFTCQICKLTANE-VETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKP-LPPKYGRVMRS 289 (641)
Q Consensus 219 ~d~~C~VC~~~~de-~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~~~gk~-l~p~yGfv~r~ 289 (641)
++..|.+|+.++.+ .++|++||.|+-..|+.|+ +|.++|+| .|.|..|.-+....- |-|..|-.+..
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy---GIle~p~g-pWlCr~Calg~~ppCvLCPkkGGamK~ 338 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACY---GILEVPEG-PWLCRTCALGIEPPCVLCPKKGGAMKP 338 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhh---ceeecCCC-CeeehhccccCCCCeeeccccCCcccc
Confidence 67899999998764 4899999999999999999 78899999 999999987632222 24567766643
No 37
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.49 E-value=3.4e-05 Score=89.20 Aligned_cols=49 Identities=31% Similarity=0.717 Sum_probs=43.8
Q ss_pred cccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 219 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 219 ~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
+...|.+|..+ +.+|+||.|..+||.+|+++ ++..+|.+ +|.|++|..-
T Consensus 46 ~~e~c~ic~~~----g~~l~c~tC~~s~h~~cl~~-pl~~~p~~-~~~c~Rc~~p 94 (696)
T KOG0383|consen 46 EQEACRICADG----GELLWCDTCPASFHASCLGP-PLTPQPNG-EFICPRCFCP 94 (696)
T ss_pred hhhhhhhhcCC----CcEEEeccccHHHHHHccCC-CCCcCCcc-ceeeeeeccC
Confidence 45789999975 88999999999999999999 89999999 6999999543
No 38
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.40 E-value=6.1e-05 Score=83.29 Aligned_cols=52 Identities=33% Similarity=0.701 Sum_probs=45.4
Q ss_pred cccccccccCCCCCC-CceEEecCCCCcccccccCCccCCCCCCCCCcccccccccc
Q 006527 219 KAFTCQICKLTANEV-ETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 219 ~d~~C~VC~~~~de~-~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~~ 274 (641)
-++.|.+|...+++. +.+++||+|+-..|..|. ++.-+|+| .|+|.+|+-+.
T Consensus 192 ~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CY---GI~f~peG-~WlCrkCi~~~ 244 (669)
T COG5141 192 FDDICTKCTSTHNENSNAIVFCDGCEICVHQSCY---GIQFLPEG-FWLCRKCIYGE 244 (669)
T ss_pred hhhhhHhccccccCCcceEEEecCcchhhhhhcc---cceecCcc-hhhhhhhcccc
Confidence 467899999887764 789999999999999999 66789999 99999998753
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.34 E-value=4.5e-05 Score=82.14 Aligned_cols=95 Identities=12% Similarity=-0.042 Sum_probs=85.0
Q ss_pred EEEEEECCEEEEeccEEEEecCCCCCCc--hhhhhhhccCCCCceEEEeEeeccCCCCCCcCCCCCCCCCcccccccCcc
Q 006527 505 YQSCRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNES 582 (641)
Q Consensus 505 y~s~~~~G~~~rvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WyYrPE~t~~~~gr~~~~~~nEvf~S~h~d 582 (641)
-.++.+.+....+|+|++++..++...| +++...|.+.. ...|..++|||||+++..+..+ .+..|+++.-...+
T Consensus 267 ~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 343 (371)
T COG5076 267 RESVLITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLS-TKELKLRNNYYRPEETFVRDAK--LFFDNCVMYNGEVT 343 (371)
T ss_pred chhhcccccccccccccccccCCcccccchhhhhhcccccc-cchhhhhcccCCCccccccccc--hhhhcccccchhhh
Confidence 5667788889999999999999999998 99999999865 4467899999999987766554 99999999999999
Q ss_pred cccccceecceEEeCCcchh
Q 006527 583 SVMAGLIRGPCEVLPPGKFK 602 (641)
Q Consensus 583 ~~~v~~IegkC~Vl~f~~y~ 602 (641)
.+.+..+.+.|+|-.+.+|.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 344 DYYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred hhhhhccchhhhHhhhhhhh
Confidence 99999999999999998883
No 40
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.94 E-value=0.00021 Score=53.53 Aligned_cols=35 Identities=29% Similarity=0.924 Sum_probs=20.6
Q ss_pred CceEEecCCCCcccccccCCccCCCCCCCCCccccccc
Q 006527 234 ETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCL 271 (641)
Q Consensus 234 ~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~ 271 (641)
+.||.|++|+-..|..|. ++..+|.+.+|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CY---Gv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCY---GVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHH---T-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhC---CcccCCCCCcEECCcCC
Confidence 579999999999999999 66788887679999884
No 41
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.93 E-value=0.00041 Score=79.42 Aligned_cols=50 Identities=26% Similarity=0.668 Sum_probs=40.2
Q ss_pred cccccccCCC-CCCCceEEecC--CCCcccccccCCccCCCCCCCCCcccccccccc
Q 006527 221 FTCQICKLTA-NEVETVVLCDA--CEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 221 ~~C~VC~~~~-de~~~LLlCD~--Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~~ 274 (641)
.-|+||...- ...+-||.||+ |.-+.|+-|+ .+.+||.| .|||.+|....
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCY---GIvqVPtG-pWfCrKCesqe 58 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACY---GIVQVPTG-PWFCRKCESQE 58 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcc---eeEecCCC-chhhhhhhhhh
Confidence 3499997421 12278999997 9999999999 77899999 99999996644
No 42
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=95.24 E-value=0.03 Score=62.37 Aligned_cols=109 Identities=23% Similarity=0.334 Sum_probs=76.1
Q ss_pred EEEeccEEEEecCCCCCCc---hhhhhhhccCCCCceEEEeEeeccCCCC------------------------------
Q 006527 514 TYKVKDHVLLHSSNNKLMP---SKLQTMWEDTGTGSKWVMVNRCFFPGDL------------------------------ 560 (641)
Q Consensus 514 ~~rvgD~VLl~s~~~~~~P---akI~~lWe~~~~g~~~v~v~WyYrPE~t------------------------------ 560 (641)
+|+|||-|-|.++... | -||+.|=.+ ..|.+..+|--|||--|.
T Consensus 5 ~y~vgd~vYf~~sss~--PYliRrIEELnKT-a~GnVeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e~ 81 (693)
T KOG3554|consen 5 MYRVGDYVYFENSSSN--PYLIRRIEELNKT-ANGNVEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATEA 81 (693)
T ss_pred cceecceEEEecCCCC--hHHHHHHHHHhcc-ccCCcceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccchh
Confidence 8999999999987754 8 777777666 457788888888885542
Q ss_pred --------CCcCCCCC----CCCCcccccccCcccccccceecceEEeCCcchhhhhhhhhccCCCCCCCCCCeEEEEEE
Q 006527 561 --------PEAVGCPC----APESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWF 628 (641)
Q Consensus 561 --------~~~~gr~~----~~~~nEvf~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~Cr~~ 628 (641)
+..+|-+. ..-..|||.|+++..-++.-|.|||-|.-..+=..+..-- ...+-||--.+
T Consensus 82 e~EEe~e~p~~vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~~~YL---------~~eDtFfySLV 152 (693)
T KOG3554|consen 82 EIEEESECPAPVDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETESLQSYL---------EKEDTFFYSLV 152 (693)
T ss_pred hhhhhccCCCcCCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHHHHhhc---------cccceeEEEee
Confidence 11222111 1225799999999999999999999998775532221111 11227999999
Q ss_pred eeccCC
Q 006527 629 YDELKG 634 (641)
Q Consensus 629 Yd~~~~ 634 (641)
||+.-+
T Consensus 153 yDP~~k 158 (693)
T KOG3554|consen 153 YDPNQK 158 (693)
T ss_pred eccchh
Confidence 999765
No 43
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=93.33 E-value=0.046 Score=66.15 Aligned_cols=47 Identities=23% Similarity=0.690 Sum_probs=42.4
Q ss_pred ccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCcccccccc
Q 006527 220 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 220 d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~ 272 (641)
++.|.+|++. +.++||..|++.||+.|..| |+-.+|+. +|-|--|..
T Consensus 344 ddhcrf~~d~----~~~lc~Et~prvvhlEcv~h-P~~~~~s~-~~e~evc~~ 390 (1414)
T KOG1473|consen 344 DDHCRFCHDL----GDLLCCETCPRVVHLECVFH-PRFAVPSA-FWECEVCNI 390 (1414)
T ss_pred cccccccCcc----cceeecccCCceEEeeecCC-ccccCCCc-cchhhhhhh
Confidence 4789999975 77899999999999999999 79999999 999999973
No 44
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=90.39 E-value=0.17 Score=57.06 Aligned_cols=54 Identities=26% Similarity=0.647 Sum_probs=40.4
Q ss_pred cccccccCCCCC-CCceEEecCCCCcccccccCCccCCCCCCC------CCcccccccccc
Q 006527 221 FTCQICKLTANE-VETVVLCDACEKGFHLKCLQMNNQKGIPRG------GEWHCMSCLKLS 274 (641)
Q Consensus 221 ~~C~VC~~~~de-~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G------~dW~Cp~C~~~~ 274 (641)
.+|.||...-.+ .+++|-||.|+-..|-.|+.-..-..||.+ +-|||--|+.+-
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gv 180 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGV 180 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCC
Confidence 489999854322 389999999999999999965322356654 249999998864
No 45
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=87.93 E-value=0.34 Score=39.90 Aligned_cols=35 Identities=20% Similarity=0.693 Sum_probs=30.4
Q ss_pred cccccccccCCCCCCCceEEecCCCCcccccccCC
Q 006527 219 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQM 253 (641)
Q Consensus 219 ~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~P 253 (641)
....|.+|++.-.+.+.+|.|..|...||..|+..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45789999998765589999999999999999965
No 46
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=86.43 E-value=0.35 Score=48.08 Aligned_cols=65 Identities=22% Similarity=0.568 Sum_probs=41.3
Q ss_pred ccccccCC--CCCCCceEEecCCCCcccccccCCc-----cCCCCCCCCC--ccccccccccCCCC-CCCCccccc
Q 006527 222 TCQICKLT--ANEVETVVLCDACEKGFHLKCLQMN-----NQKGIPRGGE--WHCMSCLKLSNGKP-LPPKYGRVM 287 (641)
Q Consensus 222 ~C~VC~~~--~de~~~LLlCD~Cd~gyHl~CL~Pp-----pL~~VP~G~d--W~Cp~C~~~~~gk~-l~p~yGfv~ 287 (641)
.|.+|+.. +..-+.||.|-||-..||..||.+. ..+.|-.+ + .-|.+|+-...-|. ..|..|.=+
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d-~FVLQCr~Cig~~~kKD~~aP~~~~C~ 75 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDD-DFVLQCRRCIGIAHKKDPRAPHHGMCQ 75 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCC-ceEEechhhcChhhcccCCCCCCCccc
Confidence 48888642 2223899999999999999999885 12344443 3 44999986443222 244454433
No 47
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.13 E-value=0.52 Score=51.51 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=36.4
Q ss_pred cccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 221 FTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 221 ~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
+.|.||...+.+++.+.. =-|.-.||..|.+|+ |..- .=+||-|...
T Consensus 230 ~~CaIClEdY~~GdklRi-LPC~H~FH~~CIDpW-L~~~----r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRI-LPCSHKFHVNCIDPW-LTQT----RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeE-ecCCCchhhccchhh-Hhhc----CccCCCCCCc
Confidence 589999999888666655 678999999999996 4311 2379999874
No 48
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=85.42 E-value=0.26 Score=60.01 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=52.1
Q ss_pred CCCCCCCChhccccccccccccCCCCCCCceEEecC-CCCcccc-cccCCc-cCCCCCCCCCccccccccccC
Q 006527 206 HPTWTPPSREYMSKAFTCQICKLTANEVETVVLCDA-CEKGFHL-KCLQMN-NQKGIPRGGEWHCMSCLKLSN 275 (641)
Q Consensus 206 ~~~W~~ps~e~~~~d~~C~VC~~~~de~~~LLlCD~-Cd~gyHl-~CL~Pp-pL~~VP~G~dW~Cp~C~~~~~ 275 (641)
.++.+..+++|-.....|.+|+.. +.+|+|++ |...||+ .||+-. --..++++ -|+|+.|.....
T Consensus 414 ~iG~dr~gr~ywfi~rrl~Ie~~d----et~l~yysT~pqly~ll~cLd~~~~e~~L~d~-i~~~~ee~~rqM 481 (1414)
T KOG1473|consen 414 PIGRDRYGRKYWFISRRLRIEGMD----ETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDG-IWERREEIIRQM 481 (1414)
T ss_pred CCCcCccccchhceeeeeEEecCC----CcEEEEecCcHHHHHHHHHhchHHHHHhhccc-hhhhHHHHHHhc
Confidence 355666777777777899999963 78999999 9999999 999831 23578998 999999987653
No 49
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=75.29 E-value=1.5 Score=49.29 Aligned_cols=68 Identities=26% Similarity=0.486 Sum_probs=47.0
Q ss_pred hccccccccccccCCCCC--CCceEEecCCCCcccccccCCccC-------CC---CCCCCCccccccccccCCCCCCCC
Q 006527 215 EYMSKAFTCQICKLTANE--VETVVLCDACEKGFHLKCLQMNNQ-------KG---IPRGGEWHCMSCLKLSNGKPLPPK 282 (641)
Q Consensus 215 e~~~~d~~C~VC~~~~de--~~~LLlCD~Cd~gyHl~CL~PppL-------~~---VP~G~dW~Cp~C~~~~~gk~l~p~ 282 (641)
+.......|.+|.+.++. +-.+|-||.|.-|-|+-|---..+ .. ..++ .++|..|-..+. .
T Consensus 123 ~gFC~~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~-~f~C~~C~~~se------L 195 (446)
T PF07227_consen 123 PGFCRRCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDM-QFHCRACGKTSE------L 195 (446)
T ss_pred CCccccCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCce-EEEccCCCChhh------H
Confidence 344566889999998653 367899999999999999532111 10 1244 699999987544 6
Q ss_pred ccccccc
Q 006527 283 YGRVMRS 289 (641)
Q Consensus 283 yGfv~r~ 289 (641)
||++.+-
T Consensus 196 lG~vk~v 202 (446)
T PF07227_consen 196 LGFVKKV 202 (446)
T ss_pred HHHHHHH
Confidence 7887653
No 50
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.28 E-value=1.7 Score=50.48 Aligned_cols=49 Identities=35% Similarity=0.689 Sum_probs=38.8
Q ss_pred ccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 220 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 220 d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
...|.+|..+ +.+++|+.|+..||+.|.++ ++...-.+..|.|..|-.+
T Consensus 47 ~ts~~~~~~~----gn~~~~~~~~~s~h~~~~~~-~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 47 ATSCGICKSG----GNLLCCDHCPASFHLECDKP-PLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhhcchhhhc----CCccccccCccccchhccCc-ccCcccccccccccCCCcc
Confidence 3679999986 67799999999999999999 5653223337999999764
No 51
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=74.56 E-value=4.7 Score=49.52 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=47.3
Q ss_pred eeEEEEEEECCEEEEeccEEEEecCCCC-----------CC------------c-hhhhhhhccCCCCceEEEeEeeccC
Q 006527 502 KKFYQSCRIGGVTYKVKDHVLLHSSNNK-----------LM------------P-SKLQTMWEDTGTGSKWVMVNRCFFP 557 (641)
Q Consensus 502 k~~y~s~~~~G~~~rvgD~VLl~s~~~~-----------~~------------P-akI~~lWe~~~~g~~~v~v~WyYrP 557 (641)
-.-|.+++|+++.|.+||-|||-=.... .. - |||..++...++..+.+.||-||--
T Consensus 440 g~iye~~~in~~~ys~g~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~kg~is~fy~~~~~~~~~~e~c~y~d~ 519 (1164)
T PTZ00112 440 GVIYESIQINDVEYSIGDDVLIFCTGNGNTYNGKSGTKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVCIYYDQ 519 (1164)
T ss_pred ceEEEEEEEcceeeccCCcEEEEEcCCCCccccccCccccccccchhhhhheecccccchhhhcCCCceeeEEEEEEEcc
Confidence 4569999999999999999998532211 00 1 9999999999999999999999987
Q ss_pred CC
Q 006527 558 GD 559 (641)
Q Consensus 558 E~ 559 (641)
-|
T Consensus 520 ~d 521 (1164)
T PTZ00112 520 HD 521 (1164)
T ss_pred cc
Confidence 65
No 52
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=73.04 E-value=1.7 Score=47.38 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=37.8
Q ss_pred cccCCCCCCCceEEecCCCCcccccc--cCCccCCCCCCCCCcccccccccc
Q 006527 225 ICKLTANEVETVVLCDACEKGFHLKC--LQMNNQKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 225 VC~~~~de~~~LLlCD~Cd~gyHl~C--L~PppL~~VP~G~dW~Cp~C~~~~ 274 (641)
.|....+..+.|+-||.|..|||..| ++. +..++|.-..|+|..|....
T Consensus 64 ~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~-~~~e~p~~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 64 KCYKPCDPDDLMEQCDLCEDWYHGECWEVGT-AEKEAPKEDPKVCDECKEAQ 114 (345)
T ss_pred hcccccCchhhhhccccccccccccccccCc-hhhcCCccccccccccchhh
Confidence 34444444348899999999999999 888 56677766589999998754
No 53
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=72.71 E-value=1.1 Score=47.85 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=37.3
Q ss_pred ccccccccCCCCC-----CCceEEecCCCCcccccccCCc-cCCCCCCCCCcccccccc
Q 006527 220 AFTCQICKLTANE-----VETVVLCDACEKGFHLKCLQMN-NQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 220 d~~C~VC~~~~de-----~~~LLlCD~Cd~gyHl~CL~Pp-pL~~VP~G~dW~Cp~C~~ 272 (641)
.-.|.+|.++... .+.||+|..|...||.+|+..+ -|..+-+...|-|..|..
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l 316 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL 316 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh
Confidence 3568888765321 1689999999999999999864 122222333899999964
No 54
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=72.48 E-value=1.3 Score=51.68 Aligned_cols=54 Identities=20% Similarity=0.597 Sum_probs=39.2
Q ss_pred cccccccccCCCCCC-CceEEecCCCCcccccccCCccCCCC-CCCCCcccccccccc
Q 006527 219 KAFTCQICKLTANEV-ETVVLCDACEKGFHLKCLQMNNQKGI-PRGGEWHCMSCLKLS 274 (641)
Q Consensus 219 ~d~~C~VC~~~~de~-~~LLlCD~Cd~gyHl~CL~PppL~~V-P~G~dW~Cp~C~~~~ 274 (641)
....|.+|+..+... +.|+.|..|..-||.+|+.- -+... =.+ -|.|+.|+.-.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~-~~~~~~l~~-gWrC~~crvCe 72 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTS-WAQHAVLSG-GWRCPSCRVCE 72 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhH-HHhHHHhcC-CcccCCceeee
Confidence 346688888765532 77999999999999999975 23322 122 49999998654
No 55
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=64.45 E-value=3.3 Score=35.16 Aligned_cols=51 Identities=27% Similarity=0.479 Sum_probs=19.8
Q ss_pred cccccccCCCCCC--CceEEec--CCCCcccccccCCccCCCCCCC------CCcccccccc
Q 006527 221 FTCQICKLTANEV--ETVVLCD--ACEKGFHLKCLQMNNQKGIPRG------GEWHCMSCLK 272 (641)
Q Consensus 221 ~~C~VC~~~~de~--~~LLlCD--~Cd~gyHl~CL~PppL~~VP~G------~dW~Cp~C~~ 272 (641)
..|.||.....+. .-.+.|+ .|...||+.||.-. +...+.+ ..+-||.|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~w-f~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEW-FLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHH-HHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHH-HHHcccCCeeecccccCCcCCCC
Confidence 4699998754322 2358898 89999999999653 2111111 0366888875
No 56
>PF10383 Clr2: Transcription-silencing protein Clr2 ; InterPro: IPR018839 Clr2 (cryptic loci regulator) is a chromatin silencing protein, one of a quartet of proteins forming the core of SHREC, a multienzyme effector complex that mediates hetero-chromatic transcriptional gene silencing in fission yeast []. Clr2 does not have any obvious well-conserved domains but, along with the other core proteins, binds to the histone deacetylase Clr3, and on its own might also have a role in chromatin organisation at the cnt domain, the site of kinetochore assembly.
Probab=61.81 E-value=8 Score=37.04 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.0
Q ss_pred eEEEEEEECCEEEEeccEEEEecCCC
Q 006527 503 KFYQSCRIGGVTYKVKDHVLLHSSNN 528 (641)
Q Consensus 503 ~~y~s~~~~G~~~rvgD~VLl~s~~~ 528 (641)
.+|++|.++-|.|.|||.|.|++.+.
T Consensus 1 i~y~GiflGAE~I~vGD~VRl~~~~~ 26 (139)
T PF10383_consen 1 IYYRGIFLGAEMIWVGDAVRLKPLNA 26 (139)
T ss_pred CeECeEEEeeEEEEeCCEEEECccCC
Confidence 48999999999999999999976553
No 57
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=58.45 E-value=2.1 Score=50.76 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=45.1
Q ss_pred ccccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 218 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 218 ~~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
..+..|..|.+. ...++|+.|-+.||..||+|.|++..+.+ -|-|+.|..+
T Consensus 504 ~~d~~~~~~~~~----l~~l~~p~~lrr~k~d~l~~~P~Kte~i~-~~~~~~~Q~~ 554 (696)
T KOG0383|consen 504 FHDISCEEQIKK----LHLLLCPHMLRRLKLDVLKPMPLKTELIG-RVELSPCQKK 554 (696)
T ss_pred cchhhHHHHHHh----hccccCchhhhhhhhhhccCCCccceeEE-EEecCHHHHH
Confidence 456889999986 66789999999999999999778999999 9999999864
No 58
>COG5475 Uncharacterized small protein [Function unknown]
Probab=56.55 E-value=22 Score=29.90 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=26.5
Q ss_pred CEEEEeccEEEEecCCCCCCchhhhhhhc--cCCCCceEEEeEeeccCC
Q 006527 512 GVTYKVKDHVLLHSSNNKLMPSKLQTMWE--DTGTGSKWVMVNRCFFPG 558 (641)
Q Consensus 512 G~~~rvgD~VLl~s~~~~~~PakI~~lWe--~~~~g~~~v~v~WyYrPE 558 (641)
+.++.+||-|-|+++.+ +|-= ...+| |+.++||=+-.
T Consensus 2 ~~~FstgdvV~lKsGGP--------~Mtvs~~ss~G--my~C~Wf~g~g 40 (60)
T COG5475 2 EMSFSTGDVVTLKSGGP--------RMTVSGYSSDG--MYECRWFDGYG 40 (60)
T ss_pred CceeecCcEEEeecCCc--------eEEEeccccCC--eEEEEEecCCC
Confidence 35789999999999886 3322 22335 89999996644
No 59
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=52.84 E-value=8.2 Score=34.58 Aligned_cols=31 Identities=26% Similarity=0.746 Sum_probs=26.3
Q ss_pred ccccccccCCCCCCCceEEecC--CCCcccccccCC
Q 006527 220 AFTCQICKLTANEVETVVLCDA--CEKGFHLKCLQM 253 (641)
Q Consensus 220 d~~C~VC~~~~de~~~LLlCD~--Cd~gyHl~CL~P 253 (641)
...|.+|++. .+..+-|.. |...||..|..-
T Consensus 55 ~~~C~iC~~~---~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS---GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC---CceeEEcCCCCCCcCCCHHHHHH
Confidence 4679999986 378899987 999999999854
No 60
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=52.29 E-value=12 Score=37.73 Aligned_cols=44 Identities=32% Similarity=0.824 Sum_probs=33.2
Q ss_pred cccccccccCCCC----CCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 219 KAFTCQICKLTAN----EVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 219 ~d~~C~VC~~~~d----e~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
...+|++|...+- +.+....|+.|...||..|+.. . .||+|.-.
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--------~---~CpkC~R~ 198 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--------K---SCPKCARR 198 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--------C---CCCCcHhH
Confidence 4578999987532 1157889999999999999932 1 39999753
No 61
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=51.92 E-value=8.7 Score=43.08 Aligned_cols=47 Identities=23% Similarity=0.498 Sum_probs=37.8
Q ss_pred cccCCCC-CCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccccC
Q 006527 225 ICKLTAN-EVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSN 275 (641)
Q Consensus 225 VC~~~~d-e~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~~~ 275 (641)
+|+..++ + +.|+-|+.|.+|=|.+|+....+.. |+ ...|..|.....
T Consensus 90 ~c~~~~~~~-g~~i~c~~c~~Wqh~~C~g~~~~~~-p~--~y~c~~c~~~~~ 137 (508)
T KOG1844|consen 90 DCGLEDDME-GLMIQCDWCGRWQHKICCGSFKSTK-PD--KYVCEICTPRNK 137 (508)
T ss_pred ccccccCCC-ceeeCCcccCcccCceeeeecCCCC-ch--hceeeeeccccc
Confidence 7887776 5 8999999999999999998754443 44 588999988654
No 62
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=51.55 E-value=6.8 Score=35.13 Aligned_cols=45 Identities=22% Similarity=0.581 Sum_probs=27.8
Q ss_pred cccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCcccccccc
Q 006527 223 CQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 223 C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~ 272 (641)
|..|+.++++ --++++ .|.-.||+.|+.-. |..- .. .=.||.|+.
T Consensus 35 Cp~Ck~Pgd~-Cplv~g-~C~H~FH~hCI~kW-l~~~-~~-~~~CPmCR~ 79 (85)
T PF12861_consen 35 CPDCKFPGDD-CPLVWG-KCSHNFHMHCILKW-LSTQ-SS-KGQCPMCRQ 79 (85)
T ss_pred CCCccCCCCC-Cceeec-cCccHHHHHHHHHH-Hccc-cC-CCCCCCcCC
Confidence 3334444332 234444 49999999999763 4432 33 458999986
No 63
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=46.38 E-value=9.2 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.641 Sum_probs=12.2
Q ss_pred ccccccCCCCCCCceEEecCCCCcccccc
Q 006527 222 TCQICKLTANEVETVVLCDACEKGFHLKC 250 (641)
Q Consensus 222 ~C~VC~~~~de~~~LLlCD~Cd~gyHl~C 250 (641)
.|.+|++.... +..-.|..|+-..|+.|
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhc
Confidence 58999987654 57888999999999987
No 64
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=45.64 E-value=16 Score=29.97 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=24.2
Q ss_pred EEeccEEEEecCCCCCCchhhhhhhccCCCCceEEEeEeec
Q 006527 515 YKVKDHVLLHSSNNKLMPSKLQTMWEDTGTGSKWVMVNRCF 555 (641)
Q Consensus 515 ~rvgD~VLl~s~~~~~~PakI~~lWe~~~~g~~~v~v~WyY 555 (641)
+++||-|.|+|+.+.-.=..|..- . ....-|+.+.||=
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~~~--~-~~~~~~v~C~WFd 38 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVGPN--A-GASGGWVECQWFD 38 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEcccc--c-cCCCCeEEEEeCC
Confidence 579999999999863222322221 1 1233599999984
No 65
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=44.31 E-value=2.7 Score=45.87 Aligned_cols=67 Identities=22% Similarity=0.409 Sum_probs=44.2
Q ss_pred CCCCCChhccccccccccccCCCCCCCceEEecCCCCcccccccCCcc--CCCCCC-CCCcccccccccc
Q 006527 208 TWTPPSREYMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNN--QKGIPR-GGEWHCMSCLKLS 274 (641)
Q Consensus 208 ~W~~ps~e~~~~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~Ppp--L~~VP~-G~dW~Cp~C~~~~ 274 (641)
.|.+.+.........|..|+..+.....+++||.|..|||..|+.+.+ ...+.. +...+|+.|....
T Consensus 227 ~~~~~~~~~~~~~~~~~~cg~~~~~~~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~~~ 296 (345)
T KOG1632|consen 227 EPVDESEAPDYSKLICDPCGLSDANKKFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTVLK 296 (345)
T ss_pred cCCCcccccccccccccccCcchHHHHHHHHHHHHHHHhcccccccccchhhhhhhhccceecCceeecc
Confidence 345555444456688999997554226788999999999999997641 011111 1137899998753
No 66
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=43.92 E-value=16 Score=31.88 Aligned_cols=33 Identities=18% Similarity=0.582 Sum_probs=23.1
Q ss_pred ccccccccccCCCCCCCceEEecCCCCcccccccC
Q 006527 218 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQ 252 (641)
Q Consensus 218 ~~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~ 252 (641)
+....|.+|++.-.. ....---|+..||..|.+
T Consensus 76 ~~~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 356789999997553 333334556999999984
No 67
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=42.25 E-value=10 Score=34.91 Aligned_cols=51 Identities=22% Similarity=0.603 Sum_probs=33.2
Q ss_pred cccccccccCCCCCCCceEEe------cCC---CCcccccccCCc----cCCCCCCCCCcccccccc
Q 006527 219 KAFTCQICKLTANEVETVVLC------DAC---EKGFHLKCLQMN----NQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 219 ~d~~C~VC~~~~de~~~LLlC------D~C---d~gyHl~CL~Pp----pL~~VP~G~dW~Cp~C~~ 272 (641)
....|..|++... +....| ..| ...|=..||.-. +.+.+... +|.||.|+.
T Consensus 6 ~g~~CHqCrqKt~--~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~-~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQKTL--DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDP-NWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCCCC--CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCC-ceECCCCCC
Confidence 4578999998755 344567 667 767767776432 11223345 899999975
No 68
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=40.63 E-value=6.7 Score=47.34 Aligned_cols=55 Identities=25% Similarity=0.717 Sum_probs=40.1
Q ss_pred cccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCC-CCccccccccc
Q 006527 219 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRG-GEWHCMSCLKL 273 (641)
Q Consensus 219 ~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G-~dW~Cp~C~~~ 273 (641)
....|.||-..-+....+--|-.|...||+.|..-+.....-.+ .-|.||.|...
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 34679999987665577888999999999999876533222221 14999999853
No 69
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=38.10 E-value=21 Score=40.83 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=38.0
Q ss_pred ccccccccCCCCC-CCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 220 AFTCQICKLTANE-VETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 220 d~~C~VC~~~~de-~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
...|.+|...... .+.++.|+.|..+||..|..| .++.-+.|.|..|+..
T Consensus 83 e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~----~~~~~~~~~~~~c~~~ 133 (464)
T KOG4323|consen 83 ELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIP----RFPSLDIGESTECVFP 133 (464)
T ss_pred ccCCcccccccccCchhhhhhhhhccCcccccCcc----CcCcCCcccccccccc
Confidence 4568888866543 267899999999999999987 3444337999999764
No 70
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=36.46 E-value=9.9 Score=28.79 Aligned_cols=43 Identities=30% Similarity=0.544 Sum_probs=29.3
Q ss_pred ccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCccccccc
Q 006527 222 TCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCL 271 (641)
Q Consensus 222 ~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~ 271 (641)
.|.||.....+.+.++... |+-.||..|+... ++. .-.||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~-~~~-----~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEW-LKR-----NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHH-HHH-----SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHH-HHh-----CCcCCccC
Confidence 5889998765435555555 9999999999763 332 23788774
No 71
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=34.42 E-value=29 Score=40.34 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=38.4
Q ss_pred ccccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCC-Cccccccccc
Q 006527 218 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGG-EWHCMSCLKL 273 (641)
Q Consensus 218 ~~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~-dW~Cp~C~~~ 273 (641)
..+.+|.-|+.. +..|.|+-|-+.||..|+.|. ..++... -|-|+.|..-
T Consensus 58 N~d~~cfechlp----g~vl~c~vc~Rs~h~~c~sp~--~q~r~~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 58 NIDPFCFECHLP----GAVLKCIVCHRSFHENCQSPD--PQKRNYSVPSDKPQPYSF 108 (588)
T ss_pred CCCcccccccCC----cceeeeehhhccccccccCcc--hhhccccccccCCccccc
Confidence 356789999985 788999999999999999883 2344331 3899998763
No 72
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.26 E-value=52 Score=34.52 Aligned_cols=74 Identities=26% Similarity=0.422 Sum_probs=47.5
Q ss_pred ccccccccccCCCCCCCceEEecCCCCcccccccC---CccCCCCCCCCCccccccccccCCCCCCCCcccccccccc--
Q 006527 218 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQ---MNNQKGIPRGGEWHCMSCLKLSNGKPLPPKYGRVMRSINT-- 292 (641)
Q Consensus 218 ~~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~---PppL~~VP~G~dW~Cp~C~~~~~gk~l~p~yGfv~r~~~s-- 292 (641)
.....|-||.....+ -.+-+| =|+||+. -+ |. +-.. .=.||-|+..-..+.+-|-||+-....-+
T Consensus 45 ~~~FdCNICLd~akd-PVvTlC------GHLFCWpClyqW-l~-~~~~-~~~cPVCK~~Vs~~~vvPlYGrG~~~~~~~~ 114 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKD-PVVTLC------GHLFCWPCLYQW-LQ-TRPN-SKECPVCKAEVSIDTVVPLYGRGSKKPSDPR 114 (230)
T ss_pred CCceeeeeeccccCC-CEEeec------ccceehHHHHHH-Hh-hcCC-CeeCCccccccccceEEeeeccCCCCCCCcc
Confidence 355779999987654 344444 2777761 11 22 2222 46799999988888888899998744333
Q ss_pred cC-CCCCCCC
Q 006527 293 TK-MPSNTSV 301 (641)
Q Consensus 293 fK-~p~~~~~ 301 (641)
.| .|+++.+
T Consensus 115 ~~~vP~RP~~ 124 (230)
T KOG0823|consen 115 KKDVPPRPAG 124 (230)
T ss_pred cccCCCCCCC
Confidence 33 6766655
No 73
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=32.37 E-value=36 Score=28.14 Aligned_cols=45 Identities=24% Similarity=0.643 Sum_probs=32.8
Q ss_pred cccccccCCCC----CCCceEEecCCCCcccccccCCccCCCCCCC-CCc
Q 006527 221 FTCQICKLTAN----EVETVVLCDACEKGFHLKCLQMNNQKGIPRG-GEW 265 (641)
Q Consensus 221 ~~C~VC~~~~d----e~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G-~dW 265 (641)
..|..|+..-. ..+.++-|..|..-|-...++|..|...|.- +||
T Consensus 3 ~~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p~~L~~ap~~~eDw 52 (54)
T TIGR01206 3 FECPDCGAEIELENPELGELVICDECGAELEVVSLDPLRLEAAPEEAEDW 52 (54)
T ss_pred cCCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCCCEEEeCccccccc
Confidence 36888987421 1268999999999999999998656666642 346
No 74
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=31.06 E-value=40 Score=33.96 Aligned_cols=20 Identities=20% Similarity=0.687 Sum_probs=16.8
Q ss_pred CceEEecCCCCcccccccCC
Q 006527 234 ETVVLCDACEKGFHLKCLQM 253 (641)
Q Consensus 234 ~~LLlCD~Cd~gyHl~CL~P 253 (641)
+.|.-|..|.++||+.-|.+
T Consensus 122 nVLFRC~~C~RawH~~HLP~ 141 (175)
T PF15446_consen 122 NVLFRCTSCHRAWHFEHLPP 141 (175)
T ss_pred heEEecCCccceeehhhCCC
Confidence 45555999999999999966
No 75
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=30.83 E-value=47 Score=41.59 Aligned_cols=50 Identities=26% Similarity=0.513 Sum_probs=38.1
Q ss_pred cccccccccCCCC---CCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 219 KAFTCQICKLTAN---EVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 219 ~d~~C~VC~~~~d---e~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
+..+|++|+.... +++..+-|..|.-.----|+.- +.-+| .=.||.|...
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEY----Er~eG-~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEY----ERKDG-NQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhh----hhhcC-CccCCccCCc
Confidence 4579999997521 2467889999987777788855 56677 8899999874
No 76
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=30.67 E-value=40 Score=40.07 Aligned_cols=47 Identities=26% Similarity=0.670 Sum_probs=33.4
Q ss_pred cccccccCCCCCCCceEEecCCCCcc-cccccCCccCCCCCCCCCcccccccc
Q 006527 221 FTCQICKLTANEVETVVLCDACEKGF-HLKCLQMNNQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 221 ~~C~VC~~~~de~~~LLlCD~Cd~gy-Hl~CL~PppL~~VP~G~dW~Cp~C~~ 272 (641)
..|..|+.... +...+|..|+... |..|-.- + ..+|.+ .=||+.|=.
T Consensus 2 ~~Cp~Cg~~n~--~~akFC~~CG~~l~~~~Cp~C-G-~~~~~~-~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFENP--NNNRFCQKCGTSLTHKPCPQC-G-TEVPVD-EAHCPNCGA 49 (645)
T ss_pred CcCCCCCCcCC--CCCccccccCCCCCCCcCCCC-C-CCCCcc-cccccccCC
Confidence 36888886533 5667899998764 3567765 2 458888 789999943
No 77
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=30.43 E-value=33 Score=29.49 Aligned_cols=30 Identities=30% Similarity=0.847 Sum_probs=24.7
Q ss_pred cccccccCCCCCCCceEEecC--CCCcccccccCC
Q 006527 221 FTCQICKLTANEVETVVLCDA--CEKGFHLKCLQM 253 (641)
Q Consensus 221 ~~C~VC~~~~de~~~LLlCD~--Cd~gyHl~CL~P 253 (641)
..|.+|++. .+..+-|.. |...||..|..-
T Consensus 37 ~~C~~C~~~---~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKK---GGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCC---CCeEEEEeCCCCCcEEChHHHcc
Confidence 579999985 267888864 999999999854
No 78
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=30.05 E-value=39 Score=26.35 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=25.5
Q ss_pred cccccccccCCCC-CCCceEEecCCCCcccccccCC
Q 006527 219 KAFTCQICKLTAN-EVETVVLCDACEKGFHLKCLQM 253 (641)
Q Consensus 219 ~d~~C~VC~~~~d-e~~~LLlCD~Cd~gyHl~CL~P 253 (641)
....|.+|++.-. ....-+.|..|....|..|+.-
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 3467999998651 1267889999999999999953
No 79
>PLN02436 cellulose synthase A
Probab=29.81 E-value=57 Score=40.90 Aligned_cols=50 Identities=26% Similarity=0.491 Sum_probs=38.4
Q ss_pred cccccccccCCC---CCCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 219 KAFTCQICKLTA---NEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 219 ~d~~C~VC~~~~---de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
+..+|++|+..- .+++..+-|..|.-.---.|+.- +.-+| .=.||.|...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey----er~eg-~~~Cpqckt~ 87 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY----ERREG-NQACPQCKTR 87 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhh----hhhcC-CccCcccCCc
Confidence 457999999762 23467889999988777788854 45677 8899999874
No 80
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=29.30 E-value=28 Score=31.84 Aligned_cols=15 Identities=33% Similarity=0.333 Sum_probs=12.8
Q ss_pred CCceEEEeEeeccCCC
Q 006527 544 TGSKWVMVNRCFFPGD 559 (641)
Q Consensus 544 ~g~~~v~v~WyYrPE~ 559 (641)
.| ..|.|.|||.+++
T Consensus 75 ~g-~~V~v~Wyyd~dD 89 (99)
T PF09345_consen 75 KG-GKVTVNWYYDEDD 89 (99)
T ss_pred cC-CcEEEEEEECCCC
Confidence 34 6899999999887
No 81
>PLN02400 cellulose synthase
Probab=28.75 E-value=68 Score=40.28 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=37.8
Q ss_pred cccccccccCCCC---CCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 219 KAFTCQICKLTAN---EVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 219 ~d~~C~VC~~~~d---e~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
+..+|++|+..-. +++..+.|..|.------|+.- +.-+| .=.||.|...
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY----ERkeG-nq~CPQCkTr 87 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY----ERKDG-TQCCPQCKTR 87 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhhe----ecccC-CccCcccCCc
Confidence 4579999997521 2467889999987777778754 56677 8899999874
No 82
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=28.65 E-value=22 Score=30.30 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=28.6
Q ss_pred ccccccccCCCCCC---------CceEEecCCCCcccccccCCccCCCCCCCCCccccccc
Q 006527 220 AFTCQICKLTANEV---------ETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCL 271 (641)
Q Consensus 220 d~~C~VC~~~~de~---------~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~ 271 (641)
++.|.||...-.+. +..+.=..|+-.||..|+... |+ . ...||.|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~W-l~----~-~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQW-LK----Q-NNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHH-HT----T-SSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHH-Hh----c-CCcCCCCC
Confidence 34599998765211 234444569999999999753 32 1 35788885
No 83
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=28.61 E-value=38 Score=25.64 Aligned_cols=28 Identities=25% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEecCCCCcccccccCCccCCCCCCCCCcccccccc
Q 006527 237 VLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 237 LlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~ 272 (641)
.+|-.|.+.||+.=.. |+- +..|..|-.
T Consensus 2 r~C~~Cg~~Yh~~~~p-------P~~-~~~Cd~cg~ 29 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNP-------PKV-EGVCDNCGG 29 (36)
T ss_dssp EEETTTTEEEETTTB---------SS-TTBCTTTTE
T ss_pred cCcCCCCCccccccCC-------CCC-CCccCCCCC
Confidence 4799999999976553 333 688988854
No 84
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=28.44 E-value=15 Score=39.43 Aligned_cols=56 Identities=27% Similarity=0.598 Sum_probs=40.2
Q ss_pred ccccccccccCCCCC------CCceEEecCCCCcccccccCCcc--CCCCCCCCCcccccccccc
Q 006527 218 SKAFTCQICKLTANE------VETVVLCDACEKGFHLKCLQMNN--QKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 218 ~~d~~C~VC~~~~de------~~~LLlCD~Cd~gyHl~CL~Ppp--L~~VP~G~dW~Cp~C~~~~ 274 (641)
...-+|..|..+.++ +++|+-|..|++.=|..||+-.+ +..|-.. .|-|-.|..-+
T Consensus 222 ~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~y-rwqcieck~cs 285 (336)
T KOG1244|consen 222 QPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTY-RWQCIECKYCS 285 (336)
T ss_pred cCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhh-eeeeeecceec
Confidence 455778888754422 27899999999999999997531 2344455 79999997543
No 85
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=27.51 E-value=12 Score=38.93 Aligned_cols=51 Identities=20% Similarity=0.441 Sum_probs=36.8
Q ss_pred ccccccccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCcccccccc
Q 006527 216 YMSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 216 ~~~~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~ 272 (641)
|.++-..|..|+.-. =.-+-|..|+--||..|.+- -+.+.|.- |+|..|-.
T Consensus 177 y~dnlk~Cn~Ch~Lv---Iqg~rCg~c~i~~h~~c~qt-y~q~~~~c--phc~d~w~ 227 (235)
T KOG4718|consen 177 YADNLKNCNLCHCLV---IQGIRCGSCNIQYHRGCIQT-YLQRRDIC--PHCGDLWT 227 (235)
T ss_pred hHHHHHHHhHhHHHh---heeeccCcccchhhhHHHHH-HhcccCcC--CchhcccC
Confidence 445667899999742 23456999999999999987 46665543 77777754
No 86
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=27.35 E-value=19 Score=42.14 Aligned_cols=46 Identities=33% Similarity=0.704 Sum_probs=32.0
Q ss_pred cccccccccCCCC----CCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 219 KAFTCQICKLTAN----EVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 219 ~d~~C~VC~~~~d----e~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
...+|.+|...+- +.+...-|+.|...||..|+.- + .--||+|.-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~------s~~CPrC~R~ 559 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---K------SPCCPRCERR 559 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---c------CCCCCchHHH
Confidence 4467888965432 1256677999999999999954 1 1229999754
No 87
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=26.82 E-value=19 Score=25.73 Aligned_cols=42 Identities=26% Similarity=0.494 Sum_probs=28.5
Q ss_pred cccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCcccccccc
Q 006527 223 CQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 223 C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~ 272 (641)
|.+|.... ...+.-..|+-.||..|+.. -++. + ...||.|..
T Consensus 2 C~iC~~~~---~~~~~~~~C~H~~c~~C~~~-~~~~---~-~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF---REPVVLLPCGHVFCRSCIDK-WLKS---G-KNTCPLCRT 43 (45)
T ss_pred CCcCchhh---hCceEecCCCChhcHHHHHH-HHHh---C-cCCCCCCCC
Confidence 77887653 23344556888999999976 3332 3 577998874
No 88
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=24.36 E-value=57 Score=26.22 Aligned_cols=16 Identities=25% Similarity=0.754 Sum_probs=9.4
Q ss_pred CCCCCCCCCccccccccc
Q 006527 256 QKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 256 L~~VP~G~dW~Cp~C~~~ 273 (641)
...+|+ +|.||.|-..
T Consensus 28 F~~Lp~--~w~CP~C~a~ 43 (47)
T PF00301_consen 28 FEDLPD--DWVCPVCGAP 43 (47)
T ss_dssp GGGS-T--T-B-TTTSSB
T ss_pred HHHCCC--CCcCcCCCCc
Confidence 456665 5999999875
No 89
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.75 E-value=24 Score=37.90 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=33.2
Q ss_pred ccccccccccCCCCCC--Cc----eEEecCCCCcccccccCCccCCCCCCCCCcccccccccc
Q 006527 218 SKAFTCQICKLTANEV--ET----VVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 218 ~~d~~C~VC~~~~de~--~~----LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~~ 274 (641)
.++..|.+|++.-+.. ++ -+-==.|+-.||-+|..-.- -.|..=.||.|..+-
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWc----ivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWC----IVGKKQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhe----eecCCCCCchHHHHh
Confidence 3668999999864421 11 11122589999999986531 112256899998753
No 90
>COG1773 Rubredoxin [Energy production and conversion]
Probab=22.52 E-value=51 Score=27.54 Aligned_cols=42 Identities=17% Similarity=0.490 Sum_probs=24.5
Q ss_pred cccccccCCCCCCCceEEecCCCCcccccccCCccCCCCCCCCCccccccccc
Q 006527 221 FTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 221 ~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~~ 273 (641)
..|.+|+--+++..----|+.|.. - +.+.+|. +|.||.|-..
T Consensus 4 ~~C~~CG~vYd~e~Gdp~~gi~pg--------T-~fedlPd--~w~CP~Cg~~ 45 (55)
T COG1773 4 WRCSVCGYVYDPEKGDPRCGIAPG--------T-PFEDLPD--DWVCPECGVG 45 (55)
T ss_pred eEecCCceEeccccCCccCCCCCC--------C-chhhCCC--ccCCCCCCCC
Confidence 468888876664211112333321 1 3467886 5999999863
No 91
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=22.27 E-value=81 Score=22.59 Aligned_cols=28 Identities=21% Similarity=0.697 Sum_probs=22.0
Q ss_pred ccccccCCCCCCCc-eEEecCCCCccccccc
Q 006527 222 TCQICKLTANEVET-VVLCDACEKGFHLKCL 251 (641)
Q Consensus 222 ~C~VC~~~~de~~~-LLlCD~Cd~gyHl~CL 251 (641)
.|.+|++..+ +. .--|+.|+-..|..|.
T Consensus 2 ~C~~C~~~~~--~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKID--GFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcC--CCEeEEeCCCCCeEcCccC
Confidence 4899988765 34 7789999988898873
No 92
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=21.38 E-value=84 Score=27.61 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=20.3
Q ss_pred EEEeccEEEEecCC--CCCCc---hhhhhhhcc
Q 006527 514 TYKVKDHVLLHSSN--NKLMP---SKLQTMWED 541 (641)
Q Consensus 514 ~~rvgD~VLl~s~~--~~~~P---akI~~lWe~ 541 (641)
-.+||||||+..+- .+..+ .++.++|+.
T Consensus 35 ~~~vGD~VLVH~G~Ai~~ide~eA~e~l~~l~e 67 (76)
T TIGR00074 35 EVKVGDYVLVHVGFAISVLDEEEARETLDALQE 67 (76)
T ss_pred CCCCCCEEEEecChhhhhCCHHHHHHHHHHHHH
Confidence 47899999999976 44445 666666663
No 93
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=21.32 E-value=29 Score=27.04 Aligned_cols=41 Identities=22% Similarity=0.597 Sum_probs=19.8
Q ss_pred cccccCCCCCCCceEEec--CCCCcccccccCCccCCCCCCCCCcccccc
Q 006527 223 CQICKLTANEVETVVLCD--ACEKGFHLKCLQMNNQKGIPRGGEWHCMSC 270 (641)
Q Consensus 223 C~VC~~~~de~~~LLlCD--~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C 270 (641)
|.+|+.-. -.-+.|. .|...+|.+|+.- -+..... + .||.|
T Consensus 1 C~~C~~iv---~~G~~C~~~~C~~r~H~~C~~~-y~r~~~~--~-~CP~C 43 (43)
T PF08746_consen 1 CEACKEIV---TQGQRCSNRDCNVRLHDDCFKK-YFRHRSN--P-KCPNC 43 (43)
T ss_dssp -TTT-SB----SSSEE-SS--S--EE-HHHHHH-HTTT-SS----B-TTT
T ss_pred CcccchhH---eeeccCCCCccCchHHHHHHHH-HHhcCCC--C-CCcCC
Confidence 66777542 2346788 6999999999976 3443332 2 68876
No 94
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=21.09 E-value=50 Score=33.82 Aligned_cols=77 Identities=26% Similarity=0.473 Sum_probs=47.0
Q ss_pred cccccccccCCCCCCCceEEecCCCCcccccccCCccCCC-------C-----CCCCCccccccccccCCCCCCCCcccc
Q 006527 219 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKG-------I-----PRGGEWHCMSCLKLSNGKPLPPKYGRV 286 (641)
Q Consensus 219 ~d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~PppL~~-------V-----P~G~dW~Cp~C~~~~~gk~l~p~yGfv 286 (641)
++..|.||.....+ -.+ -.|.-.|+..|+... +.. + ..+ ..-||.|...-....+-|-||+-
T Consensus 17 ~~~~CpICld~~~d--PVv--T~CGH~FC~~CI~~w-l~~s~~s~~~~~~~~~~k~-~~~CPvCR~~Is~~~LvPiygrg 90 (193)
T PLN03208 17 GDFDCNICLDQVRD--PVV--TLCGHLFCWPCIHKW-TYASNNSRQRVDQYDHKRE-PPKCPVCKSDVSEATLVPIYGRG 90 (193)
T ss_pred CccCCccCCCcCCC--cEE--cCCCchhHHHHHHHH-HHhccccccccccccccCC-CCcCCCCCCcCChhcEEEeeccC
Confidence 45779999976443 222 468888888888542 110 0 122 57899999876656666788887
Q ss_pred cccccc-cCCCCCCCC
Q 006527 287 MRSINT-TKMPSNTSV 301 (641)
Q Consensus 287 ~r~~~s-fK~p~~~~~ 301 (641)
+..... .+.|..+.+
T Consensus 91 ~~~~~~~~~iP~rp~~ 106 (193)
T PLN03208 91 QKAPQSGSNVPSRPSG 106 (193)
T ss_pred CCCCCCCCCCCcCCCC
Confidence 754322 445554433
No 95
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=21.01 E-value=36 Score=25.42 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=26.0
Q ss_pred ccccccccCCCCCCCceEEecCCCCcccccccCC
Q 006527 220 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQM 253 (641)
Q Consensus 220 d~~C~VC~~~~de~~~LLlCD~Cd~gyHl~CL~P 253 (641)
...|.+|++.-......+.|..|....|..|..-
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 4679999986542114688999999999999853
No 96
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=20.64 E-value=81 Score=39.46 Aligned_cols=49 Identities=27% Similarity=0.701 Sum_probs=38.7
Q ss_pred cccccccCCCC-CCCceEEecCCCCcccccccCCccCCCCCCCCCcccccccc
Q 006527 221 FTCQICKLTAN-EVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 221 ~~C~VC~~~~d-e~~~LLlCD~Cd~gyHl~CL~PppL~~VP~G~dW~Cp~C~~ 272 (641)
..|.+|+.... +.+.++.||.|.+.-|..|+.. ...+.+..|.|..|..
T Consensus 574 ~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~---~~~~~~~~~~~~~~~~ 623 (1005)
T KOG1080|consen 574 ERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGN---LKSYDGTSWVCDSCET 623 (1005)
T ss_pred ccccccccccccccceeeeeccccccCCCccccc---CCCCCCCcchhhcccc
Confidence 67999997654 2378999999999999999954 3445554799999985
Done!