Query 006527
Match_columns 641
No_of_seqs 295 out of 1249
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 18:35:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006527.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2154-2158//hhsearch_pdb/006527hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 1.0 1 1 242.7 3.1 139 491-640 3-143 (174)
2 3av4_A DNA (cytosine-5)-methyl 1.0 1 1 228.3 5.5 148 486-639 441-593 (1330)
3 3swr_A DNA (cytosine-5)-methyl 1.0 1 1 225.8 8.4 137 496-639 316-501 (1002)
4 3av4_A DNA (cytosine-5)-methyl 1.0 1 1 168.7 9.5 134 498-638 630-811 (1330)
5 3swr_A DNA (cytosine-5)-methyl 1.0 1 1 168.2 9.5 147 487-640 131-282 (1002)
6 4dov_A ORC1, origin recognitio 1.0 1 1 142.8 10.6 139 487-640 5-161 (163)
7 4ft4_B DNA (cytosine-5)-methyl 1.0 1 1 139.4 5.4 131 500-639 43-180 (784)
8 2e6r_A Jumonji/ARID domain-con 1.0 1 1 116.4 5.0 73 218-294 14-87 (92)
9 3ask_A E3 ubiquitin-protein li 1.0 1 1 108.6 5.2 52 220-273 174-225 (226)
10 3u5n_A E3 ubiquitin-protein li 1.0 1 1 104.3 4.3 53 217-275 4-56 (207)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=1.00 E-value=1 Score=242.74 Aligned_cols=139 Identities=20% Similarity=0.346 Sum_probs=121.5
Q ss_pred ECCCEEEEECCEEEEEEEEECCEEEEECCEEEEECCCCCCCC--HHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 637614896791678879987989974467997059999981--335441023799842899674106999788679999
Q 006527 491 WIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAVGCPC 568 (641)
Q Consensus 491 w~G~~~~~~~~k~~y~s~~i~G~~irvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WYYrPE~t~~~~gr~~ 568 (641)
|.|.|.+...+|.||+++.++|++|+|||||||+++++..+| |||++||++. +|++|++|+||||||||.+..+|
T Consensus 3 ~~g~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~-~g~~~v~v~WfyRPeet~~~~~~-- 79 (174)
T 1w4s_A 3 SSGSAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDS-AGEKWLYGCWFYRPNETFHLATR-- 79 (174)
T ss_dssp -----------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECT-TCCEEEEEEEEECGGGSCCCTTC--
T ss_pred CCCCCCCCCCCCEEEEEEEECCEEEECCCEEEEECCCCCCCCEEEEEEEEEECC-CCCEEEEEEEECCHHHCCCCCCC--
T ss_conf 668861048975896889999999979999999689989999999997999768-99889999982498990566577--
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
Q ss_conf 888763102567652122330014199197521556664210388777798990897877625678334578
Q 006527 569 APESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPVS 640 (641)
Q Consensus 569 ~~~~nEvf~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~CR~~Yd~~~~~F~pi~ 640 (641)
.++.||||.|+|+|++++++|.|||+|+.+.+|.+.. +......++||||+.||..++.|.++.
T Consensus 80 ~~~~~EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~--------p~~~~~~dvF~c~~~Yd~~~~~f~~i~ 143 (174)
T 1w4s_A 80 KFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLC--------PENFRDEDVYVCESRYSAKTKSFKKIK 143 (174)
T ss_dssp EEETTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEE--------ETTCCGGGEEEEEEEEETTTTEEEECS
T ss_pred CCCCCEEEEECCCCEECHHHEEEEEEEEECCHHHHCC--------CCCCCCCCEEEEEEEECCCCCEECCCC
T ss_conf 6789863970876406489910167999874452138--------677788998999689953028381675
No 2
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=1.00 E-value=1 Score=228.27 Aligned_cols=148 Identities=16% Similarity=0.282 Sum_probs=120.8
Q ss_pred CCCEEECCCEEEEECCEEEEEEEEECCEEEEECCEEEEECCCCCCCC--HHHHHHHCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 65336637614896791678879987989974467997059999981--3354410237998428996741069997886
Q 006527 486 LHNVQWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEA 563 (641)
Q Consensus 486 ~~~~~w~G~~~~~~~~k~~y~s~~i~G~~irvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WYYrPE~t~~~ 563 (641)
.--|.|.|++++..+++.+|+++.++|++|+|||||++.+++...+| |+|+.||++. +|++||+++|||||+||..
T Consensus 441 ~~~i~W~G~p~k~~~~~~~Y~~~~v~g~~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~-dg~~~~~~~WfyRp~ETvl- 518 (1330)
T 3av4_A 441 KDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK-NGQMMFHAHWFCAGTDTVL- 518 (1330)
T ss_dssp CSCEEEESSCSCCC--CEEECSEEEESSEEETTCEEEECBCCSSCCCEEEEEEEEEEET-TCCEEEEEEEEEEGGGSTT-
T ss_pred CCCCEECCCCEECCCCCEEEEEEEECCEEEECCCEEEEECCCCCCCCEEEEEEEEEECC-CCCEEEEEEEEECHHHCCC-
T ss_conf 67735706866346872564589999999965998999579999887888883621159-9977999999876677025-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCCC---HHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
Q ss_conf 7999988876310256765212233001419919752---155666421038877779899089787762567833457
Q 006527 564 VGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGK---FKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 564 ~gr~~~~~~nEvf~S~h~d~~~v~~IegkC~Vl~f~~---y~~~~~r~~e~~~~~~~~~~p~F~CR~~Yd~~~~~F~pi 639 (641)
|+ .+.++|||+|+|.|++++++|.|||.|+++.. |.++..-..+.- .+....+.+||||+.||..++.|..+
T Consensus 519 -g~--~~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~F~C~~~Yd~~~~~F~~l 593 (1330)
T 3av4_A 519 -GA--TSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETT-LPGAEDGKTYFFQLWYNQEYARFESP 593 (1330)
T ss_dssp -GG--GSCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC--------------CCEEEEEEEETTTTEEECC
T ss_pred -CC--CCCCCEEEEECCCCCCCHHHHCCEEEEEEECCCHHHHHHCCCCCCCC-CCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf -53--45887478755505674888243559998156122344146673101-12225688369986987755735786
No 3
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=1.00 E-value=1 Score=225.85 Aligned_cols=137 Identities=20% Similarity=0.274 Sum_probs=97.7
Q ss_pred EEEECCEEEEEEEEECCEEEEECCEEEEECCCC----------------------------------------CCCC---
Q ss_conf 489679167887998798997446799705999----------------------------------------9981---
Q 006527 496 LQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNN----------------------------------------KLMP--- 532 (641)
Q Consensus 496 ~~~~~~k~~y~s~~i~G~~irvgD~VLl~s~~~----------------------------------------~~~P--- 532 (641)
+...+++++|.+|..+|+.|+|||+|+|++..- ...|
T Consensus 316 l~~~~~~~~~~~~~~~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~I 395 (1002)
T 3swr_A 316 LEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRI 395 (1002)
T ss_dssp EEECSSCEEESEEEETTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEE
T ss_pred CCCCCCCEEEEEEEECCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCEE
T ss_conf 33567837888999999899518889977743433445443212223333332113134202100014545678887555
Q ss_pred HHHHHHHCCCCC------CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCCCHHHHHH
Q ss_conf 335441023799------84289967410699978867999988876310256765212233001419919752155666
Q 006527 533 SKLQTMWEDTGT------GSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENE 606 (641)
Q Consensus 533 akI~~lWe~~~~------g~~~v~v~WYYrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~ 606 (641)
|+|..||.+.++ ...+|+|+||||||+|.+........-.||||.|+|++..++.+|+|||+|+++..|.....
T Consensus 396 grI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~ 475 (1002)
T 3swr_A 396 GRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQ 475 (1002)
T ss_dssp EEEEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHH
T ss_pred EEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCEECCCHHHCCEEEEEEEECCCCCCCH
T ss_conf 67868970577666677761799999877800115654323257752589754520138799035789987044555650
Q ss_pred HHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
Q ss_conf 421038877779899089787762567833457
Q 006527 607 RLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 607 r~~e~~~~~~~~~~p~F~CR~~Yd~~~~~F~pi 639 (641)
- - ....+..|||+..||+.+|.|.++
T Consensus 476 ~--~-----~~~~p~~fyf~~~Yd~~~~~f~~~ 501 (1002)
T 3swr_A 476 V--Y-----SMGGPNRFYFLEAYNAKSKSFEDP 501 (1002)
T ss_dssp H--H-----HHTSSSEEEEEEEEETTTTEEECC
T ss_pred H--H-----CCCCCCEEEEEEEEECCCCEEECC
T ss_conf 2--2-----057998599977870788856217
No 4
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=1.00 E-value=1 Score=168.74 Aligned_cols=134 Identities=19% Similarity=0.276 Sum_probs=105.6
Q ss_pred EECCEEEEEEEEECCEEEEECCEEEEECCC----------------------------------------CCCCC---HH
Q ss_conf 967916788799879899744679970599----------------------------------------99981---33
Q 006527 498 IVDGKKFYQSCRIGGVTYKVKDHVLLHSSN----------------------------------------NKLMP---SK 534 (641)
Q Consensus 498 ~~~~k~~y~s~~i~G~~irvgD~VLl~s~~----------------------------------------~~~~P---ak 534 (641)
-.+++.+|.+++.+|+.|+|||||+|.+.. +...| |+
T Consensus 630 ~~~~~~~Y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~Igq 709 (1330)
T 3av4_A 630 EVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGR 709 (1330)
T ss_dssp ESSSSEEEEEEEETTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEE
T ss_pred CCCCCEEEEEEEECCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEE
T ss_conf 55672566679989989952888997761134332334432333323344322302220110002565567888725789
Q ss_pred HHHHHCCCCC-----CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCCCHHHHHHHHH
Q ss_conf 5441023799-----84289967410699978867999988876310256765212233001419919752155666421
Q 006527 535 LQTMWEDTGT-----GSKWVMVNRCFFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLN 609 (641)
Q Consensus 535 I~~lWe~~~~-----g~~~v~v~WYYrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~ 609 (641)
|..||.+..+ +..+|+|+||||||+|.+.....-.+..||||.|+|++.+++.+|+|||+|+++..|.....
T Consensus 710 I~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~--- 786 (1330)
T 3av4_A 710 IKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ--- 786 (1330)
T ss_dssp EEECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHH---
T ss_pred EEEEEECCCCCCCCCCCEEEEEEEEECHHHCCCCCCCCCCCCCCEEEEECCCEECCHHHCCCEEEEEECCCCCCCCC---
T ss_conf 99997057766567884389999864744424543224456754688434413237778485589985366665554---
Q ss_pred CCCCCCCCCCCCEEEEEEEEECCCCCCCC
Q ss_conf 03887777989908978776256783345
Q 006527 610 HLGNEANKGRHPVFLCQWFYDELKGVFRP 638 (641)
Q Consensus 610 e~~~~~~~~~~p~F~CR~~Yd~~~~~F~p 638 (641)
+ -....+++|||++.||..++.|..
T Consensus 787 ~----y~~~g~d~Fy~~~~Yd~~~k~~~~ 811 (1330)
T 3av4_A 787 D----YSQGGPDRFYFLEAYNSKTKNFED 811 (1330)
T ss_dssp H----HHHTSTTEEEESCEEETTTTEEEC
T ss_pred C----CCCCCCCEEEEEEEECCCCCEECC
T ss_conf 3----223789717998886266781136
No 5
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=1.00 E-value=1 Score=168.21 Aligned_cols=147 Identities=16% Similarity=0.282 Sum_probs=124.0
Q ss_pred CCEEECCCEEEEECCEEEEEEEEECCEEEEECCEEEEECCCCCCCC--HHHHHHHCCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 5336637614896791678879987989974467997059999981--33544102379984289967410699978867
Q 006527 487 HNVQWIGDVLQIVDGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAV 564 (641)
Q Consensus 487 ~~~~w~G~~~~~~~~k~~y~s~~i~G~~irvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WYYrPE~t~~~~ 564 (641)
-.+.|+|.|++...++.+|+++.++|++|+||||||+.+.++..+| |+|+.|||+. +|++||.++|||||+||.+
T Consensus 131 ~~~~W~G~p~k~~~~~~~Y~s~~v~g~~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~-~g~k~~~v~Wf~rp~ET~l-- 207 (1002)
T 3swr_A 131 NRISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDS-SNGQMFHAHWFCAGTDTVL-- 207 (1002)
T ss_dssp SCEEEESCCCCCBTTEEECSEEEETTEEEETTCEEEECBSSTTSCCEEEEEEEEEEET-TTEEEEEEEEEEEGGGSTT--
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCEEEEECCCCCCCCEEEEEEEEEECC-CCCEEEEEEEEECCHHCCC--
T ss_conf 5654367633466674310389999989964998999668888886689998776448-9976999999866101014--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCCC---HHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
Q ss_conf 999988876310256765212233001419919752---1556664210388777798990897877625678334578
Q 006527 565 GCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGK---FKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPVS 640 (641)
Q Consensus 565 gr~~~~~~nEvf~S~h~d~~~v~~IegkC~Vl~f~~---y~~~~~r~~e~~~~~~~~~~p~F~CR~~Yd~~~~~F~pi~ 640 (641)
|+ .+.+.|||.|+|+|++++++|.|||.|+.... |..+-... .........+.+|||++.||..++.|.++-
T Consensus 208 g~--~~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~--~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp 282 (1002)
T 3swr_A 208 GA--TSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD--PESLLEGDDGKTYFYQLWYDQDYARFESPP 282 (1002)
T ss_dssp GG--GSCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCC--CCCSCCCCCCTSEEEEEEEETTTTEEECCC
T ss_pred CC--CCCCCCEEEECCCCCCCHHHHCEEEEEEECCCCCCHHHHCCCC--CCCCCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 66--7899846864654577588935065999756775434422666--444455678986999989888877224887
No 6
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=1.00 E-value=1 Score=142.82 Aligned_cols=139 Identities=17% Similarity=0.272 Sum_probs=108.4
Q ss_pred CCEEECCCEEEEECCE---EEEEEEEE--CC---EEEEECCEEEEECCCCCCCC-HHHHHHHCCC--CCCCEEEEEEEEC
Q ss_conf 5336637614896791---67887998--79---89974467997059999981-3354410237--9984289967410
Q 006527 487 HNVQWIGDVLQIVDGK---KFYQSCRI--GG---VTYKVKDHVLLHSSNNKLMP-SKLQTMWEDT--GTGSKWVMVNRCF 555 (641)
Q Consensus 487 ~~~~w~G~~~~~~~~k---~~y~s~~i--~G---~~irvgD~VLl~s~~~~~~P-akI~~lWe~~--~~g~~~v~v~WYY 555 (641)
-...|+|.|+ .|.| .+|+++.+ .| .+++|||+||+++.+...+= |||.+|.|+. ....+...|.|||
T Consensus 5 ~~ysW~g~~l--~drkl~~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~~~PyVAki~~lye~~~e~~~~k~A~VQWy~ 82 (163)
T 4dov_A 5 QTFSWVGRPL--PNRKQFQQMYREICMKINDGSEIHIKVGQFVLIQGEDNKKPYVAKLIELFQNGAEVPPKKCARVQWFV 82 (163)
T ss_dssp CEEEEESCCC--CCCCTTEEEESEEEEECTTSCEEEEETTCEEEECCSSSSCCEEEEEEEEEEETTSSSCEEEEEEEEEE
T ss_pred EEEEEECCCC--CCCCCCCEEEEEEEEECCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEE
T ss_conf 7888706676--77765516354799863898776996189999748865697268899987523457884389998122
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCCCCCCC---CCCCCCEECCEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEE
Q ss_conf 699978867999988876----310256765---2122330014199197521556664210388777798990897877
Q 006527 556 FPGDLPEAVGCPCAPESN----ELYESNNES---SVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWF 628 (641)
Q Consensus 556 rPE~t~~~~gr~~~~~~n----Evf~S~h~d---~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~CR~~ 628 (641)
||+++|. +++.+++.. |||.++|.+ ..+|.||.|||.|++++-|..+ + ........||-|..
T Consensus 83 R~~EiP~--~k~~l~g~~~~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~-------p--~~~~~e~t~Fvkls 151 (163)
T 4dov_A 83 RFLEIPV--SKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVI-------P--VDQKSEETLFVKLS 151 (163)
T ss_dssp EGGGSCT--TTGGGGCSCCCTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCC-------C--SSCCCCSEEEEEEE
T ss_pred CHHHCCC--CCHHHCCCCCCCCEEEEECCCCCCCCCCHHHEEECEEEEECCCCCCC-------C--CCCCCCEEEEEEEE
T ss_conf 4245365--42232068888775998448887665257783502399992776613-------7--77665407999978
Q ss_pred EECCCCCCCCCC
Q ss_conf 625678334578
Q 006527 629 YDELKGVFRPVS 640 (641)
Q Consensus 629 Yd~~~~~F~pi~ 640 (641)
.| ++.|.|+.
T Consensus 152 Wd--~k~f~pl~ 161 (163)
T 4dov_A 152 WN--KKDFAPLP 161 (163)
T ss_dssp EC--SSCEEECC
T ss_pred EC--CCCCEECC
T ss_conf 56--87414189
No 7
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=1.00 E-value=1 Score=139.45 Aligned_cols=131 Identities=11% Similarity=0.171 Sum_probs=98.5
Q ss_pred CCEEEEEEEEECCEEEEECCEEEEECCCCCCCC--HHHHHHHCCCCCCCEEEEEEEECCCCCCCCCC--CC---CCCCCC
Q ss_conf 791678879987989974467997059999981--33544102379984289967410699978867--99---998887
Q 006527 500 DGKKFYQSCRIGGVTYKVKDHVLLHSSNNKLMP--SKLQTMWEDTGTGSKWVMVNRCFFPGDLPEAV--GC---PCAPES 572 (641)
Q Consensus 500 ~~k~~y~s~~i~G~~irvgD~VLl~s~~~~~~P--akI~~lWe~~~~g~~~v~v~WYYrPE~t~~~~--gr---~~~~~~ 572 (641)
..|.+|.++.++|++|+|+|+|++++++. .+. +||-.|||+ .+|+.++.|+||||||||.-.. +. --.+-.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~d~~~v~~~~~-~~~~i~~i~~~~~~-~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~ 120 (784)
T 4ft4_B 43 KARCHYRSAKVDNVVYCLGDDVYVKAGEN-EADYIGRITEFFEG-TDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDP 120 (784)
T ss_dssp CEEEECSEEEETTEEEETTCEEEECCSTT-SCCEEEEEEEEEEE-TTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCT
T ss_pred CCCEEEEEEEECCEEEECCCEEEEECCCC-CCCEEEEEEEEEEC-CCCCEEEEEEEEECHHHHCCCCCCCCCCCCCCCCC
T ss_conf 42133312368898996798689968899-99877899898876-99888999998507355036312566520103666
Q ss_pred CCCCCCCCCCCCCCCCEECCEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
Q ss_conf 6310256765212233001419919752155666421038877779899089787762567833457
Q 006527 573 NELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKGVFRPV 639 (641)
Q Consensus 573 nEvf~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~CR~~Yd~~~~~F~pi 639 (641)
+|||.|++.+++++.||+|||+|++..........-.. +...+|||+..|......|..+
T Consensus 121 ~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~y~~~~~~~~~~ 180 (784)
T 4ft4_B 121 RRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQL-------IESCDLYYDMSYSVAYSTFANI 180 (784)
T ss_dssp TBEEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHH-------HHHCSEEESEEEETGGGEEEEC
T ss_pred CEEEEECCEEEECHHHEEEEEEEEEECCCCCCHHHHHC-------CCCCCEEECCCCCCCCCCCCCC
T ss_conf 36897474798565894666899864843351025540-------6876268620007612375677
No 8
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=116.43 Aligned_cols=73 Identities=26% Similarity=0.736 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 56633420248988899648806899844224567766889999997435224223589889998643224-433468
Q 006527 218 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNGKPLPPKYGRVMR-SINTTK 294 (641)
Q Consensus 218 ~~d~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~~~gk~l~p~yGfv~r-~~~sfK 294 (641)
.++..|.+|+.++++ +.||+||+|+++||++||.| +|..+|+| +|||+.|+.....++ ...|||++. .+|+.+
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~P-pl~~~P~g-~W~C~~C~~~~~~~~-~~~~Gf~~~~~~y~l~ 87 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLP-PLPEIPRG-IWRCPKCILAECKQP-PEAFGFEQATQEYSLS 87 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSS-CCSSCCSS-CCCCHHHHHHHHSCC-SSCCSCCCCCCCCCCS
T ss_pred CCCCCCCCCCCCCCC-CCEEECCCCCCHHCCCCCCC-CCCCCCCC-CCCCCCCCCCCCCCC-CCCCCHHHCCCCEEEC
T ss_conf 688988368996998-77888179984334534798-84658898-749804728304598-5543854527725413
No 9
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=108.64 Aligned_cols=52 Identities=27% Similarity=0.798 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 633420248988899648806899844224567766889999997435224223
Q 006527 220 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 220 d~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~ 273 (641)
+..|.+|+..+++ +.||+||+|+++||++||+| ||..+|+|.+|||+.|...
T Consensus 174 ~c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~P-PL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDP-DKQLMCDECDMAFHIYCLDP-PLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC---CCEECSSSCCEECSCC--C-CCCSCCSSSCCCCGGGC--
T ss_pred CCCCCCCCCCCCC-CCEEECCCCCCCEECCCCCC-CCCCCCCCCCCCCCCCCCC
T ss_conf 8888688997999-87688389994100756788-7456989988789387494
No 10
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=104.28 Aligned_cols=53 Identities=26% Similarity=0.699 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35663342024898889964880689984422456776688999999743522422358
Q 006527 217 MSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSN 275 (641)
Q Consensus 217 ~~~d~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~~~ 275 (641)
..+++.|.+|+.+ +.||+||+|+++||++||.| +|..+|+| +|+|+.|.....
T Consensus 4 d~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p-~l~~~p~~-~W~C~~C~~~~~ 56 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVP-TLLSFPSG-DWICTFCRDIGK 56 (207)
T ss_dssp CSSCSSBTTTCCC----EEEEECSSSSCEECTTTSSS-CCSSCCSS-CCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCC----CCEEECCCCCCCCCCCCCCC-CCCCCCCC-CEEECCEECCCC
T ss_conf 8888989888999----93677699998438715899-98888998-878684268664
Done!