Query 006527
Match_columns 641
No_of_seqs 295 out of 1249
Neff 4.3
Searched_HMMs 13730
Date Tue Mar 26 18:38:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006527.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2154-2158//hhsearch_scop/006527hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m4za_ b.34.12.1 (A:) Origin- 99.6 1.1E-17 7.8E-22 129.6 -4.2 130 500-639 36-190 (217)
2 d1fp0a1 g.50.1.2 (A:19-88) Nuc 99.1 1E-10 7.6E-15 84.6 5.7 53 217-275 4-56 (70)
3 d1f62a_ g.50.1.2 (A:) Williams 99.0 1.1E-10 7.8E-15 84.5 3.1 49 222-273 2-50 (51)
4 d1mm2a_ g.50.1.2 (A:) Mi2-beta 98.9 7.9E-10 5.8E-14 78.9 4.1 51 218-274 7-57 (61)
5 d1weva_ g.50.1.2 (A:) PHD fing 98.8 8.5E-10 6.2E-14 78.7 2.6 55 218-274 14-73 (88)
6 d1wesa_ g.50.1.2 (A:) PHD Inhi 98.5 2.9E-08 2.1E-12 68.8 4.2 50 219-275 15-67 (71)
7 d1weea_ g.50.1.2 (A:) PHD fing 98.5 3.1E-08 2.3E-12 68.6 3.7 52 221-275 17-68 (72)
8 d1we9a_ g.50.1.2 (A:) PHD fing 98.5 2.9E-08 2.1E-12 68.8 3.2 56 219-275 5-60 (64)
9 d1wepa_ g.50.1.2 (A:) PHD fing 98.4 3.5E-08 2.6E-12 68.3 2.4 54 221-275 12-65 (79)
10 d2pnxa1 g.50.1.2 (A:195-245) I 98.2 1.5E-07 1.1E-11 64.3 1.9 45 221-272 3-50 (51)
11 d1wema_ g.50.1.2 (A:) Death as 98.1 2.9E-07 2.1E-11 62.4 0.6 54 219-275 15-72 (76)
12 d1wewa_ g.50.1.2 (A:) Sumoylat 97.9 2.6E-06 1.9E-10 56.3 3.1 55 219-275 15-74 (78)
13 d1iyma_ g.44.1.1 (A:) EL5 RING 84.7 0.32 2.3E-05 23.5 2.9 49 218-272 3-51 (55)
14 d1wila_ g.50.1.3 (A:) Hypothet 82.1 0.26 1.9E-05 24.0 1.6 56 217-274 12-77 (89)
15 d1weqa_ g.50.1.2 (A:) PHD fing 72.5 2.2 0.00016 18.1 4.4 37 235-276 45-82 (85)
16 d1v87a_ g.44.1.1 (A:) Deltex p 52.2 1.4 9.9E-05 19.4 -0.1 52 220-273 25-91 (114)
17 d1vyxa_ g.44.1.3 (A:) IE1B pro 51.7 0.5 3.6E-05 22.2 -2.4 50 219-273 5-56 (60)
18 d1v5na_ g.49.1.3 (A:) Pdi-like 44.8 4.6 0.00033 16.0 1.7 41 219-261 46-87 (89)
19 d1dx8a_ g.41.5.1 (A:) Rubredox 42.6 7.2 0.00052 14.8 2.8 44 219-274 6-50 (70)
20 d1g25a_ g.44.1.1 (A:) TFIIH Ma 36.4 3.3 0.00024 17.0 -0.2 51 219-274 2-53 (65)
21 d1iroa_ g.41.5.1 (A:) Rubredox 32.8 10 0.00074 13.8 2.1 43 220-274 3-46 (53)
22 d1zbdb_ g.50.1.1 (B:) Effector 31.1 11 0.00079 13.6 2.7 52 220-273 48-100 (124)
23 d2ak3a2 g.41.2.1 (A:125-161) M 25.2 14 0.001 13.0 1.9 28 237-272 3-30 (37)
24 d1s3ga2 g.41.2.1 (A:126-160) M 22.9 15 0.0011 12.7 2.1 28 237-272 3-30 (35)
25 d2dsxa1 g.41.5.1 (A:1-52) Rubr 22.5 15 0.0011 12.6 2.3 18 255-274 29-46 (52)
26 d1ur6b_ g.44.1.1 (B:) Not-4 N- 20.8 5.8 0.00042 15.4 -1.2 47 222-273 2-48 (52)
No 1
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.58 E-value=1.1e-17 Score=129.61 Aligned_cols=130 Identities=15% Similarity=0.084 Sum_probs=92.5
Q ss_pred CCEEEEEEEEE--CCEEEEECCEEEEECCCCCCCC-HHHHHHHCCCCC----------------------CCEEEEEEEE
Q ss_conf 79167887998--7989974467997059999981-335441023799----------------------8428996741
Q 006527 500 DGKKFYQSCRI--GGVTYKVKDHVLLHSSNNKLMP-SKLQTMWEDTGT----------------------GSKWVMVNRC 554 (641)
Q Consensus 500 ~~k~~y~s~~i--~G~~irvgD~VLl~s~~~~~~P-akI~~lWe~~~~----------------------g~~~v~v~WY 554 (641)
++++...+..+ ||..+++||+|||+++.....= +.|..+=.+... +++|.++.||
T Consensus 36 ~~~~~~~~~~r~~D~~e~~~GD~Vlvk~~~~~~~~v~iI~ei~~~~~~~~~e~~~~~~lr~~e~~~~~~~~~~~~~~~w~ 115 (217)
T d1m4za_ 36 RGAKTEHYLKRSSDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANIL 115 (217)
T ss_dssp ----CEEEEEETTTCCEECTTCEEEEEETTTTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHS
T ss_pred CCCCCCEEEEEECCCEEEECCCEEEEECCCCCCCEEEEEEEECCCCCCCHHEEEEECCCCHHHHCCCHHHHHCCCCEEEE
T ss_conf 77777689887208838844889999479999735899966314764210003442002044434310111015422461
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 06999788679999888763102567652122330014199197521556664210388777798990897877625678
Q 006527 555 FFPGDLPEAVGCPCAPESNELYESNNESSVMAGLIRGPCEVLPPGKFKEENERLNHLGNEANKGRHPVFLCQWFYDELKG 634 (641)
Q Consensus 555 YrPE~t~~~~gr~~~~~~nEvf~S~h~d~~~v~~IegkC~Vl~f~~y~~~~~r~~e~~~~~~~~~~p~F~CR~~Yd~~~~ 634 (641)
++|+++-+. +++....+||||+|+|+|++.+.+|.|||.|+.+.+|..+.. ......+||||+.||..++
T Consensus 116 ~~p~e~~~~-k~r~~~~~~ElflT~~~d~i~~~~I~~k~~V~s~~ef~~~~~---------~~~~~~~F~cr~~~D~~~~ 185 (217)
T d1m4za_ 116 NRPLNYYNK-LFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKG---------NVDPERDFTVRYICEPTGE 185 (217)
T ss_dssp CCCHHHHHH-HHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGG---------GCCTTTEEEEEEECCTTSC
T ss_pred CCCHHHHHH-CCCCCCCCCEEEECCCCCEEEHHHEEEEEEEECHHHHCCHHH---------CCCCCCEEEEEEEECCCCC
T ss_conf 581454311-100116755057638535005454033579952899300021---------1577975999989758878
Q ss_pred CCCCC
Q ss_conf 33457
Q 006527 635 VFRPV 639 (641)
Q Consensus 635 ~F~pi 639 (641)
.|.+|
T Consensus 186 ~f~~i 190 (217)
T d1m4za_ 186 KFVDI 190 (217)
T ss_dssp CCEEC
T ss_pred CEEEC
T ss_conf 04664
No 2
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.05 E-value=1e-10 Score=84.59 Aligned_cols=53 Identities=32% Similarity=0.796 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35663342024898889964880689984422456776688999999743522422358
Q 006527 217 MSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSN 275 (641)
Q Consensus 217 ~~~d~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~~~ 275 (641)
.+...+|.+|+++ +.||+||+|+++||++|+.| ++..+|++ +|+|+.|.....
T Consensus 4 Dd~c~~C~~C~~~----~~ll~Cd~C~~~~H~~C~~p-~l~~~p~~-~W~C~~C~~~~~ 56 (70)
T d1fp0a1 4 DDSATICRVCQKP----GDLVMCNQCEFCFHLDCHLP-ALQDVPGE-EWSCSLCHVLPD 56 (70)
T ss_dssp SSSSSCCSSSCSS----SCCEECTTSSCEECTTSSST-TCCCCCSS-SCCCCSCCCCCS
T ss_pred CCCCCCCCCCCCC----CEEEECCCCCHHHCCCCCCC-CCCCCCCC-CEECCCCCCCCC
T ss_conf 8897998777996----97888999991563514899-86848898-989967948376
No 3
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.97 E-value=1.1e-10 Score=84.50 Aligned_cols=49 Identities=37% Similarity=1.046 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3420248988899648806899844224567766889999997435224223
Q 006527 222 TCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 222 ~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~ 273 (641)
.|.+|+..+++ +.||+||+|+++||++|++| ++..+|++ +|||+.|...
T Consensus 2 ~C~vC~~~~~~-~~~i~Cd~C~~~~H~~C~~p-~~~~~p~~-~W~C~~C~~~ 50 (51)
T d1f62a_ 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRP-ALYEVPDG-EWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCT-TCCSCCSS-CCSCTTTSCC
T ss_pred CCCCCCCCCCC-CCEEECCCCCCCCCCCCCCC-CCCCCCCC-CEECCCCCCC
T ss_conf 99576897999-88788589997897998899-87858997-9899289090
No 4
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.86 E-value=7.9e-10 Score=78.91 Aligned_cols=51 Identities=31% Similarity=0.802 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 566334202489888996488068998442245677668899999974352242235
Q 006527 218 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 218 ~~d~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~~ 274 (641)
.++++|.+|+.+ +.||+||.|+++||+.|+.+ ++..+|++ +|+|+.|....
T Consensus 7 ~~~~~C~~C~~~----g~lv~Cd~C~~~~H~~C~~~-~~~~~~~~-~W~C~~C~~~~ 57 (61)
T d1mm2a_ 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNP-PLPEIPNG-EWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSS-CCSSCCSS-CCCCTTTTTTC
T ss_pred CCCCCCCCCCCC----CEEEEECCCCCCCCHHHCCC-CCCCCCCC-CEECCCCCCCC
T ss_conf 886898678997----95888699996076114588-85758997-68997883845
No 5
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.80 E-value=8.5e-10 Score=78.72 Aligned_cols=55 Identities=22% Similarity=0.602 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 566334202489888-9964880689984422456776688----99999974352242235
Q 006527 218 SKAFTCQICKLTANE-VETVVLCDACEKGFHLKCLQMNNQK----GIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 218 ~~d~~C~VC~~~~~e-~~~LLlCD~CdrgyHl~CL~PppL~----~VP~G~dW~Cp~Ci~~~ 274 (641)
+....|.+|+....+ .+.||+||+|+++||+.|+.| ++. .+|.+ +|||+.|+...
T Consensus 14 ~~~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p-~~~~~~~~~~~~-~W~C~~C~~~~ 73 (88)
T d1weva_ 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKP-QVTDKEVNDPRL-VWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSS-CCCHHHHHCTTC-CCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCC-EEECCCCCCHH
T ss_conf 5859925789906789996888489997456112798-555433455898-38994457337
No 6
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.54 E-value=2.9e-08 Score=68.83 Aligned_cols=50 Identities=26% Similarity=0.743 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCCCCCCCEEEE--CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 663342024898889964880--6899-84422456776688999999743522422358
Q 006527 219 KAFTCQICKLTANEVETVVLC--DACE-KGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSN 275 (641)
Q Consensus 219 ~d~~C~VC~~~~~e~~~LLlC--D~Cd-rgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~~~ 275 (641)
+..+| +|++.++ +.||+| |.|. .|||+.|+ +|+.+|.+ +|||+.|+...+
T Consensus 15 e~~~C-iC~~~~~--~~~i~c~~~~C~~~wfH~~Cv---gl~~~p~~-~w~C~~C~~~~g 67 (71)
T d1wesa_ 15 EPTYC-LCNQVSY--GEMIGCDNEQCPIEWFHFSCV---SLTYKPKG-KWYCPKCRGDSG 67 (71)
T ss_dssp SCCCS-TTCCCCC--SSEECCSCTTCSCCCEETTTT---TCSSCCSS-CCCCTTTSSCCS
T ss_pred CCCEE-EECCCCC--CCEEEEECCCCCCCCCCCCCC---CCCCCCCC-CEECCCCCCCCC
T ss_conf 98877-8289778--987788788999968548547---89847998-589968866348
No 7
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.51 E-value=3.1e-08 Score=68.62 Aligned_cols=52 Identities=25% Similarity=0.698 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3342024898889964880689984422456776688999999743522422358
Q 006527 221 FTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSN 275 (641)
Q Consensus 221 ~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~~~ 275 (641)
..| +|+..+++.+.||.||.|++|||+.|+.+ +...++.+ +|+|+.|+...+
T Consensus 17 ~~C-~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~-~~~~~~~~-~~~C~~C~~~~~ 68 (72)
T d1weea_ 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGI-NNADALPS-KFLCFRCIELSG 68 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTC-CTTSCCCS-CCCCHHHHHHCS
T ss_pred EEE-ECCCCCCCCCEEEEECCCCCCCCHHHCCC-CCCCCCCC-CEECCCCCCCCC
T ss_conf 770-68998489986989599998395512697-62458997-699928858188
No 8
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.49 E-value=2.9e-08 Score=68.81 Aligned_cols=56 Identities=27% Similarity=0.504 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 663342024898889964880689984422456776688999999743522422358
Q 006527 219 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSN 275 (641)
Q Consensus 219 ~d~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~~~ 275 (641)
....|.+|++.+++++.||.||.|+.|||..|+.+ +...++.-.+|+|+.|....+
T Consensus 5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~-~~~~~~~~~~w~C~~C~~~~~ 60 (64)
T d1we9a_ 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKI-TPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTC-CTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CHHHCCCCCEEECCCCCCCCC
T ss_conf 97818486997799987877489995698045785-867888898089968938098
No 9
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.43 E-value=3.5e-08 Score=68.30 Aligned_cols=54 Identities=19% Similarity=0.443 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3342024898889964880689984422456776688999999743522422358
Q 006527 221 FTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLSN 275 (641)
Q Consensus 221 ~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~~~ 275 (641)
.+|.+|++.+++.+.||.||.|+.|||..|+.. ....++..++|+|+.|....+
T Consensus 12 pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~-~~~~~~~~~~~~C~~C~~~~g 65 (79)
T d1wepa_ 12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGI-EEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTC-CHHHHTTCSBBCCTTTTTTSC
T ss_pred CEEEECCCCCCCCCCEEECCCCCCCEECCCCCC-CHHCCCCCCEEECCCCCCCCC
T ss_conf 868489896599986888998997396034174-510278787789956738768
No 10
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}
Probab=98.24 E-value=1.5e-07 Score=64.29 Aligned_cols=45 Identities=29% Similarity=0.799 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCCCCCEEEECC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 334202489888996488068---9984422456776688999999743522422
Q 006527 221 FTCQICKLTANEVETVVLCDA---CEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 221 ~~C~VC~~~~~e~~~LLlCD~---CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~ 272 (641)
.+| +|++.++ +.||.||. |..|||+.|+ +|..+|.+ +|||+.|..
T Consensus 3 ~yC-~C~~~~~--~~mi~Cd~~~C~~~WfH~~Cv---gl~~~p~~-~w~C~~C~~ 50 (51)
T d2pnxa1 3 TYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACV---GLTTKPRG-KWFCPRCSQ 50 (51)
T ss_dssp EET-TTTEECC--SEEEECSCTTCSSCEEEGGGG---TCSSCCSS-CCCCHHHHC
T ss_pred CEE-ECCCCCC--CCEEEEECCCCCCCCEECCCC---CCCCCCCC-CEECCCCCC
T ss_conf 378-8179788--989888567999877928764---88847998-699937779
No 11
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.07 E-value=2.9e-07 Score=62.35 Aligned_cols=54 Identities=30% Similarity=0.676 Sum_probs=39.9
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 663342024898889964880689984422456776----688999999743522422358
Q 006527 219 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMN----NQKGIPRGGEWHCMSCLKLSN 275 (641)
Q Consensus 219 ~d~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~Pp----pL~~VP~G~dW~Cp~Ci~~~~ 275 (641)
+..+| +|++.+++ +.||.||.|+.|||+.|+..+ .+...+.. +|+|+.|....+
T Consensus 15 ~~~~C-iC~~~~~~-~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~-~w~C~~C~~~~~ 72 (76)
T d1wema_ 15 NALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGE-DYICPNCTILSG 72 (76)
T ss_dssp TCCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTC-CCCCHHHHHHSC
T ss_pred CCCEE-ECCCCCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CEECCCCCCCCC
T ss_conf 95887-89992599-818887999976995106887010111478998-189979818487
No 12
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.92 E-value=2.6e-06 Score=56.28 Aligned_cols=55 Identities=20% Similarity=0.535 Sum_probs=37.6
Q ss_pred CCCCCCCCCCCCCCCCCEEEEC--CCCCCCCCCCCCCC--CCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 6633420248988899648806--89984422456776--688999-999743522422358
Q 006527 219 KAFTCQICKLTANEVETVVLCD--ACEKGFHLKCLQMN--NQKGIP-RGGEWHCMSCLKLSN 275 (641)
Q Consensus 219 ~d~~C~VC~~~~~e~~~LLlCD--~CdrgyHl~CL~Pp--pL~~VP-~G~dW~Cp~Ci~~~~ 275 (641)
+...| +|+..++. +.||+|+ .|+.|||+.|+... ++...+ ....|+|+.|....+
T Consensus 15 ~~~~C-~C~~~~~~-~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T d1wewa_ 15 IKVRC-VCGNSLET-DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCC-SSCCCCCC-SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCCEE-ECCCCCCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 85483-89994178-86788868989867980011766324224568999898978848588
No 13
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=84.74 E-value=0.32 Score=23.50 Aligned_cols=49 Identities=22% Similarity=0.534 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5663342024898889964880689984422456776688999999743522422
Q 006527 218 SKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 218 ~~d~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~ 272 (641)
+++..|.||.....+++.++.+..|...||..|+... ++. .=.||-|+.
T Consensus 3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~W-l~~-----~~~CP~CR~ 51 (55)
T d1iyma_ 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMW-LGS-----HSTCPLCRL 51 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHT-TTT-----CCSCSSSCC
T ss_pred CCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHH-HHH-----CCCCCCCCC
T ss_conf 8999984979001079889990898981059999999-984-----993878897
No 14
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.09 E-value=0.26 Score=24.01 Aligned_cols=56 Identities=21% Similarity=0.577 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC-C---------CCCCCCCCCCCCCCCCCC
Q ss_conf 356633420248988899648806899844224567766-8---------899999974352242235
Q 006527 217 MSKAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMNN-Q---------KGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 217 ~~~d~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~Ppp-L---------~~VP~G~dW~Cp~Ci~~~ 274 (641)
...|..|.||..... +.++-|--|.|.||..||.--+ + ..--.+.-|-|..|-..+
T Consensus 12 v~~D~mC~vC~v~t~--~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~nl~ 77 (89)
T d1wila_ 12 VVNDEMCDVCEVWTA--ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN 77 (89)
T ss_dssp CCCSCCCTTTCCCCS--SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred CCCCCCCCCCCCCCC--CCEECCEEECCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCHH
T ss_conf 886762365674334--540232133411247889885102448999999860478883102212254
No 15
>d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=72.48 E-value=2.2 Score=18.10 Aligned_cols=37 Identities=30% Similarity=0.811 Sum_probs=28.3
Q ss_pred CEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6488068998-44224567766889999997435224223589
Q 006527 235 TVVLCDACEK-GFHLKCLQMNNQKGIPRGGEWHCMSCLKLSNG 276 (641)
Q Consensus 235 ~LLlCD~Cdr-gyHl~CL~PppL~~VP~G~dW~Cp~Ci~~~~g 276 (641)
.||+|..|.. +-|..|- .|+..+. +|.|..|..-..+
T Consensus 45 ~ii~C~~CGS~gtH~~C~---~l~~~~~--~y~C~~C~~v~~~ 82 (85)
T d1weqa_ 45 RLILCATCGSHGTHRDCS---SLRPNSK--KWECNECLPASGP 82 (85)
T ss_dssp BCEECSSSCCCEECSGGG---TCCTTCS--CCCCTTTSCCSSC
T ss_pred EEEEECCCCCCCCHHHHC---CCCCCCC--CEECCCCCCHHCC
T ss_conf 898600018851046561---7868999--8799757201076
No 16
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=52.20 E-value=1.4 Score=19.41 Aligned_cols=52 Identities=27% Similarity=0.429 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCC--------------CCCCEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 633420248988--------------89964880689984422456776688999-9997435224223
Q 006527 220 AFTCQICKLTAN--------------EVETVVLCDACEKGFHLKCLQMNNQKGIP-RGGEWHCMSCLKL 273 (641)
Q Consensus 220 d~~C~VC~~~~~--------------e~~~LLlCD~CdrgyHl~CL~PppL~~VP-~G~dW~Cp~Ci~~ 273 (641)
+..|.||...-. ..+..+..-.|...||..||... +..-. .+ .--||.|+..
T Consensus 25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~W-l~~~~~~~-~~~CP~CR~~ 91 (114)
T d1v87a_ 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAM-YCNGNKDG-SLQCPSCKTI 91 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHH-HHHTCCSS-CCBCTTTCCB
T ss_pred CCCCCCHHHEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHH-HHHCCCCC-CCCCCCCCCH
T ss_conf 6534530100013444335433345455434687999990569999999-99667578-9766550122
No 17
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=51.70 E-value=0.5 Score=22.23 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=34.7
Q ss_pred CCCCCCCCCCCCCCCCCEE--EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6633420248988899648--806899844224567766889999997435224223
Q 006527 219 KAFTCQICKLTANEVETVV--LCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 219 ~d~~C~VC~~~~~e~~~LL--lCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~ 273 (641)
+..+|.+|.....+ ..+. .|.+|...||..||... +.. .+ .+.||-|...
T Consensus 5 d~~~C~IC~~~~~~-~~~~~c~c~~c~h~~H~~Cl~~W-~~~--~~-~~~CP~Cr~~ 56 (60)
T d1vyxa_ 5 DVPVCWICNEELGN-ERFRACGCTGELENVHRSCLSTW-LTI--SR-NTACQICGVV 56 (60)
T ss_dssp SCCEETTTTEECSC-CCCCSCCCSSGGGSCCHHHHHHH-HHH--HT-CSBCTTTCCB
T ss_pred CCCCCCCCCCCCCC-CEEEECCCCCCCCEECHHHHHHH-HHH--CC-CCCCCCCCCE
T ss_conf 89999238862777-51673145897788738999999-710--78-9889166971
No 18
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=44.75 E-value=4.6 Score=16.03 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 663342024898889964880689984422456776-6889999
Q 006527 219 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMN-NQKGIPR 261 (641)
Q Consensus 219 ~d~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~Pp-pL~~VP~ 261 (641)
....|..|++... +..--|+.|+--.|+.|...| .++..|.
T Consensus 46 ~~~~C~~C~~~~~--g~~Y~C~~C~f~LH~~CA~~P~~~~~~p~ 87 (89)
T d1v5na_ 46 QVYTCDKCEEEGT--IWSYHCDECDFDLHAKCALNEDTKESGPS 87 (89)
T ss_dssp SSCCCTTTSCCCC--SCEEECTTTCCCCCHHHHHCSSCSSCCCC
T ss_pred CCCEECCCCCCCC--CCEEEECCCCCEECHHHCCCCCCCCCCCC
T ss_conf 9997378898767--80767164798856878589866678978
No 19
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=42.58 E-value=7.2 Score=14.77 Aligned_cols=44 Identities=14% Similarity=0.348 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 663342024898889964880689984422456776-68899999974352242235
Q 006527 219 KAFTCQICKLTANEVETVVLCDACEKGFHLKCLQMN-NQKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 219 ~d~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~Pp-pL~~VP~G~dW~Cp~Ci~~~ 274 (641)
....|.+|+--+++. .|--..=..|- +...+|+ +|.||.|-...
T Consensus 6 ~ky~C~~CgyiYDp~----------~GD~~~gI~pGT~F~dLP~--dW~CP~Cga~K 50 (70)
T d1dx8a_ 6 GKYECEACGYIYEPE----------KGDKFAGIPPGTPFVDLSD--SFMCPACRSPK 50 (70)
T ss_dssp SCEEETTTCCEECTT----------TCCTTTTCCSSCCGGGSCT--TCBCTTTCCBG
T ss_pred CEEECCCCCEEECCC----------CCCCCCCCCCCCCHHHCCC--CCCCCCCCCCH
T ss_conf 707829999087834----------4784568798999678889--87893999968
No 20
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.39 E-value=3.3 Score=16.97 Aligned_cols=51 Identities=18% Similarity=0.375 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 663342024898-88996488068998442245677668899999974352242235
Q 006527 219 KAFTCQICKLTA-NEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 219 ~d~~C~VC~~~~-~e~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~~ 274 (641)
++..|.||.... ...+..++-..|...||..|+.. -+.. + .=-||.|+..-
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~-~~~~---~-~~~CP~CR~~i 53 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDL-LFVR---G-AGNCPECGTPL 53 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHH-HHHT---T-SSSCTTTCCCC
T ss_pred CCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHH-HHCC---C-CCCCCCCCCCC
T ss_conf 989987088260039956798476372764889999-8570---8-19799998681
No 21
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=32.75 E-value=10 Score=13.79 Aligned_cols=43 Identities=26% Similarity=0.503 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 63342024898889964880689984422456776-68899999974352242235
Q 006527 220 AFTCQICKLTANEVETVVLCDACEKGFHLKCLQMN-NQKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 220 d~~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~Pp-pL~~VP~G~dW~Cp~Ci~~~ 274 (641)
...|.+|+--+++. .|--..=..|- +...+|+ +|.||.|-...
T Consensus 3 ky~C~~CgyiYd~~----------~Gd~~~gi~pGT~F~~LP~--dw~CP~C~a~K 46 (53)
T d1iroa_ 3 KYTCTVCGYIYNPE----------DGDPDNGVNPGTDFKDIPD--DWVCPLCGVGK 46 (53)
T ss_dssp CEEETTTCCEECTT----------TCBGGGTBCTTCCGGGSCT--TCBCTTTCCBG
T ss_pred CEECCCCCCEECCC----------CCCCCCCCCCCCCHHHCCC--CCCCCCCCCCH
T ss_conf 75909999288855----------4884568798999788899--88993998948
No 22
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=31.06 E-value=11 Score=13.61 Aligned_cols=52 Identities=25% Similarity=0.578 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6334202489888-99648806899844224567766889999997435224223
Q 006527 220 AFTCQICKLTANE-VETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 220 d~~C~VC~~~~~e-~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~ 273 (641)
...|.+|+..-.- ...-..|-.|.+.++-.|-.- .....+.. .|+|..|...
T Consensus 48 ~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~-~~~~~~~~-~w~C~~C~k~ 100 (124)
T d1zbdb_ 48 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE-TSNNRPHP-VWLCKICLEQ 100 (124)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE-CCCSSSSC-CEEEHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC-CEECCCCCCH
T ss_conf 98583459733478999886724786011588777-56899997-9898067526
No 23
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=25.23 E-value=14 Score=12.95 Aligned_cols=28 Identities=4% Similarity=-0.113 Sum_probs=20.8
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 880689984422456776688999999743522422
Q 006527 237 VLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 237 LlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~ 272 (641)
..|-.|.+.||+.-- .|+- ++.|..|-.
T Consensus 3 ~vc~~cG~~Yh~~~~-------pPk~-~g~CD~cg~ 30 (37)
T d2ak3a2 3 WIHPGSGRVYNIEFN-------PPKT-MGIDDLTGE 30 (37)
T ss_dssp EEETTTTEEEETTTB-------CCSS-TTBCTTTCC
T ss_pred EEECCCCCHHHHCCC-------CCCC-CCCCCCCCC
T ss_conf 051775870210457-------7446-688647798
No 24
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=22.85 E-value=15 Score=12.66 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 880689984422456776688999999743522422
Q 006527 237 VLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLK 272 (641)
Q Consensus 237 LlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~ 272 (641)
..|..|.+.||.+-. | |+- ++.|..|-.
T Consensus 3 ~~C~~CG~~Yh~~~~-p------Pk~-~g~CD~cg~ 30 (35)
T d1s3ga2 3 RICKVCGTSYHLLFN-P------PQV-EGKCDKDGG 30 (35)
T ss_dssp EEETTTCCEEETTTB-C------CSB-TTBCTTTCC
T ss_pred CCCCCCCCHHCCCCC-C------CCC-CCCCCCCCC
T ss_conf 688574751145667-9------888-883679899
No 25
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=22.46 E-value=15 Score=12.61 Aligned_cols=18 Identities=22% Similarity=0.713 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q ss_conf 68899999974352242235
Q 006527 255 NQKGIPRGGEWHCMSCLKLS 274 (641)
Q Consensus 255 pL~~VP~G~dW~Cp~Ci~~~ 274 (641)
+...+|+ +|.||.|-...
T Consensus 29 ~F~~LP~--~w~CP~C~a~K 46 (52)
T d2dsxa1 29 KFEDLPD--DWACPVCGASK 46 (52)
T ss_dssp CGGGSCT--TCBCTTTCCBG
T ss_pred CHHHCCC--CCCCCCCCCCH
T ss_conf 9788899--78992998918
No 26
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.81 E-value=5.8 Score=15.37 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3420248988899648806899844224567766889999997435224223
Q 006527 222 TCQICKLTANEVETVVLCDACEKGFHLKCLQMNNQKGIPRGGEWHCMSCLKL 273 (641)
Q Consensus 222 ~C~VC~~~~~e~~~LLlCD~CdrgyHl~CL~PppL~~VP~G~dW~Cp~Ci~~ 273 (641)
-|.||....++++..+.-..|...||..|+.. -+. .+ ..-||.|+..
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~-w~~---~~-~~~CP~CR~~ 48 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHR-IRT---DE-NGLCPACRKP 48 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHH-HTT---TS-CCBCTTTCCB
T ss_pred CCCCCCHHHHCCCCEEEECCCCCCCCHHHHHH-HHH---HC-CCCCCCCCCC
T ss_conf 99587823518982598669977045589999-996---64-8989865794
Done!